Query 002493
Match_columns 915
No_of_seqs 1090 out of 4673
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 2E-147 5E-152 1119.0 73.7 793 3-796 1-794 (794)
2 KOG0292 Vesicle coat complex C 100.0 2.4E-83 5.2E-88 675.5 70.7 720 8-766 2-770 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 3.4E-68 7.4E-73 566.9 41.8 433 320-764 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 5.3E-49 1.1E-53 379.0 29.4 329 8-379 108-478 (480)
5 KOG0318 WD40 repeat stress pro 100.0 9.7E-43 2.1E-47 349.6 51.9 459 7-489 51-599 (603)
6 KOG1538 Uncharacterized conser 100.0 8.5E-44 1.8E-48 365.1 38.8 670 9-800 8-714 (1081)
7 KOG0271 Notchless-like WD40 re 100.0 8.6E-44 1.9E-48 343.1 28.9 325 49-416 107-479 (480)
8 KOG0291 WD40-repeat-containing 100.0 1.8E-40 4E-45 346.7 54.2 458 15-490 96-707 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-43 5.9E-48 344.8 23.4 283 13-299 173-458 (459)
10 KOG0286 G-protein beta subunit 100.0 1.7E-41 3.7E-46 316.6 32.8 291 4-298 44-342 (343)
11 KOG1524 WD40 repeat-containing 100.0 6E-40 1.3E-44 329.4 44.7 686 1-808 1-732 (737)
12 KOG0318 WD40 repeat stress pro 100.0 4.1E-38 8.8E-43 316.5 49.5 426 10-454 142-602 (603)
13 KOG0306 WD40-repeat-containing 100.0 1.1E-38 2.4E-43 333.3 43.6 434 16-490 66-661 (888)
14 KOG2041 WD40 repeat protein [G 100.0 7.4E-39 1.6E-43 331.3 38.5 711 14-825 13-832 (1189)
15 KOG0319 WD40-repeat-containing 100.0 1E-37 2.2E-42 326.4 46.5 463 13-490 60-574 (775)
16 KOG0291 WD40-repeat-containing 100.0 3.1E-35 6.8E-40 307.7 61.8 429 13-490 53-547 (893)
17 KOG0279 G protein beta subunit 100.0 1.2E-38 2.6E-43 295.9 31.7 294 1-298 1-310 (315)
18 KOG0276 Vesicle coat complex C 100.0 1.7E-36 3.7E-41 310.3 50.5 625 51-753 7-709 (794)
19 KOG0319 WD40-repeat-containing 100.0 3.7E-37 7.9E-42 322.2 41.8 473 6-490 95-616 (775)
20 KOG0272 U4/U6 small nuclear ri 100.0 3.5E-39 7.5E-44 316.0 23.9 282 55-380 173-458 (459)
21 KOG0273 Beta-transducin family 100.0 2.4E-37 5.1E-42 307.1 33.2 322 13-381 176-522 (524)
22 KOG0292 Vesicle coat complex C 100.0 5.4E-35 1.2E-39 310.3 51.4 664 6-750 42-780 (1202)
23 KOG0286 G-protein beta subunit 100.0 8E-37 1.7E-41 285.4 33.0 286 50-379 48-342 (343)
24 KOG0273 Beta-transducin family 100.0 8E-37 1.7E-41 303.3 30.9 277 16-297 236-519 (524)
25 KOG0295 WD40 repeat-containing 100.0 2E-37 4.2E-42 298.1 25.7 294 4-299 97-404 (406)
26 KOG0284 Polyadenylation factor 100.0 8E-38 1.7E-42 304.9 16.7 281 16-301 97-380 (464)
27 KOG0279 G protein beta subunit 100.0 3.8E-35 8.3E-40 272.7 32.4 297 49-382 7-313 (315)
28 KOG0285 Pleiotropic regulator 100.0 5.9E-36 1.3E-40 286.5 25.8 290 4-299 140-437 (460)
29 KOG0296 Angio-associated migra 100.0 2.8E-34 6E-39 276.7 30.0 287 8-298 57-395 (399)
30 KOG0265 U5 snRNP-specific prot 100.0 2.7E-34 5.9E-39 269.7 29.0 286 7-297 39-334 (338)
31 KOG0315 G-protein beta subunit 100.0 5.4E-34 1.2E-38 260.2 30.0 268 28-301 11-288 (311)
32 KOG0263 Transcription initiati 100.0 5.7E-35 1.2E-39 309.8 26.9 242 15-260 378-650 (707)
33 cd00200 WD40 WD40 domain, foun 100.0 3.8E-33 8.2E-38 294.9 39.3 287 8-298 2-288 (289)
34 KOG0645 WD40 repeat protein [G 100.0 1.5E-33 3.3E-38 260.8 31.0 287 4-299 3-309 (312)
35 KOG1538 Uncharacterized conser 100.0 2E-33 4.2E-38 289.2 34.1 687 5-781 43-817 (1081)
36 KOG0306 WD40-repeat-containing 100.0 1.4E-32 3E-37 287.8 40.9 396 6-454 98-664 (888)
37 KOG0284 Polyadenylation factor 100.0 3.4E-35 7.4E-40 286.6 16.9 282 56-381 95-379 (464)
38 KOG0315 G-protein beta subunit 100.0 7.3E-33 1.6E-37 252.8 28.3 266 9-279 34-308 (311)
39 KOG0266 WD40 repeat-containing 100.0 7.4E-33 1.6E-37 305.8 33.2 286 10-299 153-452 (456)
40 KOG0263 Transcription initiati 100.0 2E-33 4.3E-38 298.1 26.1 244 52-299 373-647 (707)
41 KOG0316 Conserved WD40 repeat- 100.0 1.1E-32 2.5E-37 249.4 25.3 283 8-297 10-296 (307)
42 KOG0293 WD40 repeat-containing 100.0 3.6E-33 7.8E-38 272.4 23.6 291 5-300 214-512 (519)
43 KOG0285 Pleiotropic regulator 100.0 1.9E-32 4.1E-37 262.6 26.1 250 48-303 142-391 (460)
44 KOG2106 Uncharacterized conser 100.0 1.8E-30 4E-35 259.9 41.1 433 7-490 96-623 (626)
45 KOG0645 WD40 repeat protein [G 100.0 6.2E-31 1.3E-35 243.6 32.7 291 49-381 6-310 (312)
46 KOG0282 mRNA splicing factor [ 100.0 2.3E-33 5.1E-38 280.2 17.7 288 6-298 205-502 (503)
47 KOG0265 U5 snRNP-specific prot 100.0 1.9E-31 4E-36 250.7 28.3 285 50-378 40-334 (338)
48 KOG0275 Conserved WD40 repeat- 100.0 3.6E-33 7.9E-38 263.6 16.7 283 13-299 211-507 (508)
49 KOG0278 Serine/threonine kinas 100.0 5.7E-33 1.2E-37 253.4 16.9 290 7-303 6-299 (334)
50 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3.1E-35 310.6 42.9 282 11-298 479-790 (793)
51 KOG0281 Beta-TrCP (transducin 100.0 1.6E-33 3.5E-38 268.5 13.3 272 14-302 196-478 (499)
52 KOG0295 WD40 repeat-containing 100.0 3.4E-32 7.5E-37 262.1 22.2 288 49-379 100-403 (406)
53 KOG2048 WD40 repeat protein [G 100.0 2.6E-28 5.6E-33 254.0 51.1 475 13-498 23-554 (691)
54 KOG0313 Microtubule binding pr 100.0 6.4E-31 1.4E-35 254.7 27.7 277 13-298 103-415 (423)
55 KOG0296 Angio-associated migra 100.0 1.1E-29 2.5E-34 245.0 32.4 325 48-417 55-397 (399)
56 KOG0310 Conserved WD40 repeat- 100.0 1.6E-30 3.5E-35 260.6 26.0 276 15-297 26-305 (487)
57 KOG1539 WD repeat protein [Gen 100.0 8.3E-28 1.8E-32 255.4 47.2 464 12-496 73-651 (910)
58 cd00200 WD40 WD40 domain, foun 100.0 2.9E-29 6.3E-34 265.1 36.1 285 51-379 3-288 (289)
59 KOG0316 Conserved WD40 repeat- 100.0 9E-30 1.9E-34 230.7 25.8 246 49-302 9-258 (307)
60 KOG1408 WD40 repeat protein [F 100.0 6.1E-29 1.3E-33 258.3 34.3 439 10-494 73-715 (1080)
61 KOG1407 WD40 repeat protein [F 100.0 1.9E-29 4.2E-34 232.4 26.6 279 8-293 13-294 (313)
62 KOG0266 WD40 repeat-containing 100.0 2.6E-29 5.5E-34 277.7 33.1 281 57-380 159-452 (456)
63 KOG2041 WD40 repeat protein [G 100.0 3E-29 6.5E-34 260.5 31.1 715 3-782 59-924 (1189)
64 KOG0643 Translation initiation 100.0 1.2E-29 2.7E-34 234.3 23.8 284 10-298 5-314 (327)
65 PLN00181 protein SPA1-RELATED; 100.0 2.7E-28 5.9E-33 291.2 41.8 259 36-300 457-737 (793)
66 KOG1446 Histone H3 (Lys4) meth 100.0 7.5E-28 1.6E-32 229.4 34.5 290 4-301 3-303 (311)
67 KOG0288 WD40 repeat protein Ti 100.0 2E-30 4.3E-35 253.9 17.4 285 6-298 166-458 (459)
68 KOG1063 RNA polymerase II elon 100.0 1.8E-27 4E-32 247.8 39.6 477 5-490 44-696 (764)
69 KOG0305 Anaphase promoting com 100.0 1.1E-28 2.4E-33 258.6 28.2 273 20-299 182-459 (484)
70 KOG0277 Peroxisomal targeting 100.0 6.1E-29 1.3E-33 228.1 22.9 279 19-299 12-307 (311)
71 KOG0643 Translation initiation 100.0 6.4E-28 1.4E-32 223.0 28.2 296 52-379 5-314 (327)
72 KOG3617 WD40 and TPR repeat-co 100.0 1.2E-27 2.5E-32 253.0 34.1 776 1-828 1-944 (1416)
73 KOG0268 Sof1-like rRNA process 100.0 1.3E-29 2.7E-34 244.0 16.9 285 7-301 58-345 (433)
74 KOG0772 Uncharacterized conser 100.0 9.2E-29 2E-33 248.4 23.6 288 8-298 160-484 (641)
75 KOG0282 mRNA splicing factor [ 100.0 2.3E-29 5E-34 251.7 18.6 251 47-301 204-462 (503)
76 KOG0299 U3 snoRNP-associated p 100.0 4E-28 8.6E-33 241.5 25.2 276 8-290 135-444 (479)
77 KOG0293 WD40 repeat-containing 100.0 7.8E-29 1.7E-33 242.2 19.2 253 4-260 258-514 (519)
78 KOG1539 WD repeat protein [Gen 100.0 7E-26 1.5E-30 240.9 40.8 388 18-453 162-647 (910)
79 KOG0281 Beta-TrCP (transducin 100.0 4.9E-29 1.1E-33 238.0 15.3 228 56-299 196-426 (499)
80 KOG1407 WD40 repeat protein [F 100.0 2.3E-27 5E-32 218.7 25.5 276 51-373 14-292 (313)
81 KOG2106 Uncharacterized conser 100.0 2.2E-24 4.8E-29 216.6 48.8 413 20-490 70-518 (626)
82 KOG0973 Histone transcription 100.0 1.5E-27 3.3E-32 262.5 28.3 282 13-298 11-352 (942)
83 KOG0289 mRNA splicing factor [ 100.0 3.6E-27 7.8E-32 232.4 26.1 279 16-297 220-502 (506)
84 KOG0275 Conserved WD40 repeat- 100.0 2.1E-28 4.4E-33 231.5 16.1 279 56-379 212-506 (508)
85 KOG0278 Serine/threonine kinas 100.0 6.3E-28 1.4E-32 220.6 18.5 287 50-383 7-298 (334)
86 PTZ00421 coronin; Provisional 100.0 3.6E-26 7.8E-31 250.7 35.2 265 14-282 19-314 (493)
87 KOG0294 WD40 repeat-containing 100.0 7.6E-27 1.6E-31 221.2 25.6 247 5-261 33-283 (362)
88 KOG0301 Phospholipase A2-activ 100.0 4.3E-27 9.3E-32 245.3 25.7 282 4-301 3-288 (745)
89 KOG0308 Conserved WD40 repeat- 100.0 8.3E-28 1.8E-32 248.5 20.1 276 20-298 29-324 (735)
90 KOG0640 mRNA cleavage stimulat 100.0 5E-27 1.1E-31 221.2 22.1 287 10-300 107-425 (430)
91 KOG0647 mRNA export protein (c 100.0 2.1E-26 4.5E-31 217.0 26.2 270 13-290 25-312 (347)
92 KOG0277 Peroxisomal targeting 100.0 1.5E-27 3.3E-32 218.9 18.1 242 15-258 60-308 (311)
93 KOG0274 Cdc4 and related F-box 100.0 1.5E-26 3.3E-31 253.4 29.4 271 14-299 207-480 (537)
94 KOG1408 WD40 repeat protein [F 100.0 3.8E-25 8.3E-30 230.3 38.0 540 16-593 38-717 (1080)
95 KOG0305 Anaphase promoting com 100.0 4.5E-27 9.7E-32 246.6 23.9 244 14-261 216-463 (484)
96 KOG0283 WD40 repeat-containing 100.0 2.7E-27 5.8E-32 254.1 22.0 289 9-304 260-579 (712)
97 KOG1036 Mitotic spindle checkp 100.0 5E-26 1.1E-30 215.7 27.7 268 14-291 12-294 (323)
98 KOG2048 WD40 repeat protein [G 100.0 1.7E-23 3.8E-28 218.3 48.9 480 54-590 22-549 (691)
99 KOG0310 Conserved WD40 repeat- 100.0 1.1E-26 2.4E-31 233.1 23.9 239 56-298 25-265 (487)
100 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-25 1.4E-29 209.4 34.7 247 48-300 5-261 (311)
101 KOG0641 WD40 repeat protein [G 100.0 5.7E-25 1.2E-29 198.0 31.1 280 14-299 31-347 (350)
102 KOG0300 WD40 repeat-containing 99.9 1.6E-26 3.4E-31 218.3 21.4 289 4-298 137-473 (481)
103 KOG0308 Conserved WD40 repeat- 99.9 5.4E-27 1.2E-31 242.5 19.9 229 67-297 35-281 (735)
104 PTZ00420 coronin; Provisional 99.9 7.3E-25 1.6E-29 240.8 36.4 245 33-283 50-318 (568)
105 KOG1274 WD40 repeat protein [G 99.9 3.7E-22 8E-27 215.5 55.8 277 12-298 10-297 (933)
106 PTZ00421 coronin; Provisional 99.9 3.9E-25 8.4E-30 242.5 32.3 227 10-240 70-314 (493)
107 KOG0274 Cdc4 and related F-box 99.9 1.5E-25 3.3E-30 245.4 28.3 247 8-267 242-490 (537)
108 KOG0973 Histone transcription 99.9 1.8E-25 4E-30 246.2 28.5 284 56-382 12-355 (942)
109 KOG0313 Microtubule binding pr 99.9 8.4E-26 1.8E-30 219.4 22.6 249 5-259 134-418 (423)
110 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.5E-28 219.7 38.5 425 21-490 20-599 (764)
111 KOG0288 WD40 repeat protein Ti 99.9 1.6E-26 3.5E-31 226.6 15.8 285 49-379 167-458 (459)
112 KOG0268 Sof1-like rRNA process 99.9 1.5E-26 3.3E-31 222.9 15.2 287 49-384 58-347 (433)
113 KOG0299 U3 snoRNP-associated p 99.9 4.8E-25 1E-29 219.6 25.6 244 50-299 135-408 (479)
114 KOG0289 mRNA splicing factor [ 99.9 1.1E-24 2.3E-29 215.1 25.6 235 59-297 221-458 (506)
115 PTZ00420 coronin; Provisional 99.9 1.2E-23 2.7E-28 231.2 36.8 223 75-300 50-292 (568)
116 KOG0772 Uncharacterized conser 99.9 9.7E-25 2.1E-29 219.7 25.3 238 51-291 161-429 (641)
117 KOG0647 mRNA export protein (c 99.9 2.5E-24 5.5E-29 203.0 26.3 270 55-372 25-312 (347)
118 KOG0640 mRNA cleavage stimulat 99.9 5.2E-25 1.1E-29 207.7 21.0 289 50-381 105-425 (430)
119 KOG2055 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 215.9 25.2 279 15-299 213-510 (514)
120 KOG0264 Nucleosome remodeling 99.9 9.2E-25 2E-29 218.1 22.4 246 13-259 122-404 (422)
121 KOG1332 Vesicle coat complex C 99.9 4.8E-25 1E-29 201.5 17.7 250 95-381 7-285 (299)
122 KOG0639 Transducin-like enhanc 99.9 9E-25 2E-29 218.8 20.3 277 13-297 417-700 (705)
123 KOG1332 Vesicle coat complex C 99.9 1.1E-24 2.4E-29 199.1 17.8 252 8-259 4-286 (299)
124 KOG0641 WD40 repeat protein [G 99.9 5.1E-23 1.1E-27 185.5 27.7 245 10-259 84-349 (350)
125 KOG0300 WD40 repeat-containing 99.9 6.8E-24 1.5E-28 200.6 21.6 246 48-298 139-425 (481)
126 KOG2096 WD40 repeat protein [G 99.9 3.3E-23 7.2E-28 196.4 26.2 288 94-415 81-399 (420)
127 KOG2096 WD40 repeat protein [G 99.9 4.1E-23 8.8E-28 195.9 26.8 282 8-295 79-397 (420)
128 KOG0283 WD40 repeat-containing 99.9 5.8E-24 1.3E-28 228.7 23.6 251 92-385 259-579 (712)
129 KOG0294 WD40 repeat-containing 99.9 8.6E-23 1.9E-27 193.9 27.9 263 30-302 4-282 (362)
130 KOG0264 Nucleosome remodeling 99.9 1E-23 2.3E-28 210.6 22.6 244 55-299 122-402 (422)
131 KOG0646 WD40 repeat protein [G 99.9 6.2E-24 1.4E-28 212.2 20.8 253 29-284 52-332 (476)
132 KOG0301 Phospholipase A2-activ 99.9 6.6E-23 1.4E-27 214.2 27.1 282 47-383 4-289 (745)
133 KOG0650 WD40 repeat nucleolar 99.9 1.8E-23 3.9E-28 214.4 22.1 286 6-298 391-732 (733)
134 KOG4283 Transcription-coupled 99.9 9.1E-23 2E-27 191.4 24.6 283 12-300 40-364 (397)
135 KOG1036 Mitotic spindle checkp 99.9 2.4E-22 5.2E-27 190.8 27.5 268 56-373 12-294 (323)
136 KOG4328 WD40 protein [Function 99.9 3.5E-23 7.7E-28 206.1 22.7 288 9-299 180-493 (498)
137 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 192.5 23.5 280 18-304 26-325 (405)
138 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 202.5 24.2 260 36-299 17-305 (476)
139 KOG2055 WD40 repeat protein [G 99.9 2.8E-22 6.1E-27 199.8 25.2 286 56-381 212-511 (514)
140 KOG0267 Microtubule severing p 99.9 1.5E-24 3.3E-29 227.1 9.4 259 27-295 4-262 (825)
141 KOG1445 Tumor-specific antigen 99.9 8.3E-22 1.8E-26 202.9 26.9 133 9-141 73-212 (1012)
142 KOG0639 Transducin-like enhanc 99.9 9.5E-23 2.1E-27 204.4 19.1 274 97-416 417-702 (705)
143 KOG0267 Microtubule severing p 99.9 4.7E-24 1E-28 223.5 9.4 238 9-250 22-259 (825)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 199.5 36.6 266 28-302 2-280 (300)
145 KOG0269 WD40 repeat-containing 99.9 4.5E-23 9.8E-28 218.0 15.3 243 18-262 90-343 (839)
146 KOG0269 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 214.1 19.1 277 16-297 40-336 (839)
147 KOG1273 WD40 repeat protein [G 99.9 4.5E-21 9.7E-26 181.9 24.4 235 60-298 26-277 (405)
148 KOG2445 Nuclear pore complex c 99.9 8.7E-21 1.9E-25 179.7 25.9 253 6-259 4-318 (361)
149 KOG1524 WD40 repeat-containing 99.9 3.8E-19 8.2E-24 180.3 39.2 226 56-291 13-246 (737)
150 KOG0270 WD40 repeat-containing 99.9 8.1E-22 1.8E-26 195.9 18.8 245 18-264 176-454 (463)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.4E-20 1.2E-24 196.0 34.6 264 9-281 25-300 (300)
152 KOG4328 WD40 protein [Function 99.9 7.5E-21 1.6E-25 189.6 24.5 253 42-297 171-446 (498)
153 KOG1274 WD40 repeat protein [G 99.9 1.4E-20 3.1E-25 203.3 28.6 241 55-301 11-262 (933)
154 KOG2445 Nuclear pore complex c 99.9 4.2E-20 9.1E-25 175.1 27.5 246 54-300 10-317 (361)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-21 7.6E-26 193.1 20.5 262 17-283 36-305 (673)
156 KOG0302 Ribosome Assembly prot 99.9 6.8E-21 1.5E-25 185.2 21.5 246 8-256 144-435 (440)
157 KOG0270 WD40 repeat-containing 99.9 6.9E-21 1.5E-25 189.4 22.0 275 20-299 130-447 (463)
158 KOG0302 Ribosome Assembly prot 99.9 5.3E-21 1.1E-25 185.9 20.4 241 55-297 149-435 (440)
159 KOG2919 Guanine nucleotide-bin 99.9 1.6E-20 3.5E-25 178.9 22.8 272 18-292 52-361 (406)
160 KOG0650 WD40 repeat nucleolar 99.9 2.4E-20 5.2E-25 191.6 23.8 243 50-298 393-677 (733)
161 KOG1963 WD40 repeat protein [G 99.9 3.9E-18 8.6E-23 184.6 41.7 407 11-456 12-540 (792)
162 KOG1034 Transcriptional repres 99.9 2.8E-20 6E-25 177.8 22.2 282 10-298 33-380 (385)
163 KOG0307 Vesicle coat complex C 99.9 5.9E-22 1.3E-26 219.6 12.6 281 17-298 8-324 (1049)
164 KOG0321 WD40 repeat-containing 99.9 3.4E-20 7.3E-25 192.2 22.8 277 20-300 54-390 (720)
165 KOG4378 Nuclear protein COP1 [ 99.9 3.6E-20 7.9E-25 185.9 20.3 264 32-300 7-279 (673)
166 KOG1009 Chromatin assembly com 99.9 5.1E-19 1.1E-23 174.2 27.4 317 142-488 13-367 (434)
167 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-20 2.5E-25 193.5 14.9 264 5-270 284-572 (577)
168 COG2319 FOG: WD40 repeat [Gene 99.8 7.3E-17 1.6E-21 181.7 47.4 285 10-299 60-357 (466)
169 KOG4497 Uncharacterized conser 99.8 2.4E-19 5.2E-24 171.2 22.2 383 20-489 13-428 (447)
170 KOG1963 WD40 repeat protein [G 99.8 2.4E-17 5.3E-22 178.5 40.0 416 6-460 48-589 (792)
171 KOG1188 WD40 repeat protein [G 99.8 1.7E-19 3.6E-24 173.7 20.4 271 28-300 41-345 (376)
172 KOG0307 Vesicle coat complex C 99.8 1.3E-20 2.8E-25 209.0 13.4 246 15-262 64-330 (1049)
173 KOG3617 WD40 and TPR repeat-co 99.8 1.6E-18 3.4E-23 184.6 28.2 110 665-782 909-1021(1416)
174 KOG1009 Chromatin assembly com 99.8 6.5E-19 1.4E-23 173.5 23.0 279 14-297 12-368 (434)
175 KOG4283 Transcription-coupled 99.8 8.7E-19 1.9E-23 164.9 22.1 243 12-258 98-364 (397)
176 KOG1034 Transcriptional repres 99.8 2.9E-19 6.3E-24 171.0 18.6 243 13-258 87-382 (385)
177 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.4E-23 163.8 20.8 268 27-297 26-357 (370)
178 KOG1007 WD repeat protein TSSC 99.8 9.1E-19 2E-23 164.4 20.1 250 7-259 55-361 (370)
179 KOG0644 Uncharacterized conser 99.8 3.5E-20 7.6E-25 197.2 10.1 282 4-299 179-466 (1113)
180 KOG1517 Guanine nucleotide bin 99.8 5.2E-18 1.1E-22 185.4 25.9 287 11-300 1060-1380(1387)
181 KOG4227 WD40 repeat protein [G 99.8 9.5E-18 2.1E-22 163.6 23.5 294 7-304 48-390 (609)
182 KOG0321 WD40 repeat-containing 99.8 2.7E-18 5.9E-23 178.2 20.6 251 9-262 94-394 (720)
183 KOG1445 Tumor-specific antigen 99.8 3.5E-18 7.5E-23 176.5 20.1 148 144-292 629-785 (1012)
184 KOG1587 Cytoplasmic dynein int 99.8 1.7E-17 3.7E-22 180.4 26.5 260 37-298 222-513 (555)
185 KOG0322 G-protein beta subunit 99.8 1.1E-18 2.4E-23 161.9 14.4 286 6-299 5-321 (323)
186 KOG0649 WD40 repeat protein [G 99.8 7E-17 1.5E-21 148.1 24.6 268 16-297 11-312 (325)
187 KOG2919 Guanine nucleotide-bin 99.8 2.3E-17 5E-22 157.5 21.6 233 15-250 104-361 (406)
188 KOG0290 Conserved WD40 repeat- 99.8 6.5E-17 1.4E-21 152.3 23.7 273 17-293 46-358 (364)
189 KOG0642 Cell-cycle nuclear pro 99.8 3.8E-18 8.3E-23 175.2 16.0 245 52-299 289-559 (577)
190 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 3.1E-20 171.2 37.1 290 6-301 146-442 (466)
191 KOG1920 IkappaB kinase complex 99.8 1.2E-14 2.5E-19 162.9 42.8 276 14-297 17-361 (1265)
192 PF04762 IKI3: IKI3 family; I 99.8 4.4E-12 9.6E-17 149.7 66.0 545 16-607 22-713 (928)
193 KOG1912 WD40 repeat protein [G 99.8 2.2E-14 4.7E-19 152.5 40.5 367 3-398 43-572 (1062)
194 KOG0649 WD40 repeat protein [G 99.8 6.4E-16 1.4E-20 141.9 24.8 227 59-297 12-270 (325)
195 KOG4497 Uncharacterized conser 99.8 2E-16 4.4E-21 151.4 22.1 308 15-378 48-427 (447)
196 KOG1523 Actin-related protein 99.7 1.5E-16 3.3E-21 152.2 20.8 243 52-297 5-275 (361)
197 KOG1587 Cytoplasmic dynein int 99.7 1.3E-16 2.8E-21 173.6 22.5 243 15-259 242-516 (555)
198 KOG1334 WD40 repeat protein [G 99.7 1.9E-17 4.1E-22 166.7 14.6 296 4-301 131-466 (559)
199 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 153.7 18.5 197 70-268 41-251 (376)
200 KOG0303 Actin-binding protein 99.7 3.9E-16 8.5E-21 153.2 20.5 226 10-240 76-320 (472)
201 KOG1272 WD40-repeat-containing 99.7 2E-17 4.3E-22 165.5 11.0 270 17-297 131-405 (545)
202 KOG0290 Conserved WD40 repeat- 99.7 7.1E-16 1.5E-20 145.4 19.5 239 12-255 93-361 (364)
203 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 148.7 21.9 245 51-299 50-320 (609)
204 KOG1523 Actin-related protein 99.7 7.5E-16 1.6E-20 147.5 19.5 234 13-250 8-269 (361)
205 KOG2110 Uncharacterized conser 99.7 2.8E-14 6.1E-19 139.6 29.7 233 58-299 6-246 (391)
206 KOG3616 Selective LIM binding 99.7 2.9E-15 6.2E-20 158.0 24.4 272 451-794 323-617 (1636)
207 KOG0303 Actin-binding protein 99.7 2.8E-15 6.2E-20 147.2 22.4 202 93-298 75-291 (472)
208 PRK11028 6-phosphogluconolacto 99.7 2.1E-14 4.5E-19 154.2 31.4 259 33-298 8-301 (330)
209 KOG1310 WD40 repeat protein [G 99.7 3.4E-16 7.3E-21 159.7 16.1 244 4-266 39-310 (758)
210 PRK01742 tolB translocation pr 99.7 2.5E-15 5.4E-20 166.2 24.2 235 36-282 183-426 (429)
211 KOG2110 Uncharacterized conser 99.7 1.4E-13 2.9E-18 134.9 31.4 236 14-260 4-249 (391)
212 KOG2111 Uncharacterized conser 99.7 1.1E-13 2.4E-18 132.8 29.8 235 59-302 7-257 (346)
213 KOG1517 Guanine nucleotide bin 99.7 8E-15 1.7E-19 161.0 24.1 288 58-382 1065-1381(1387)
214 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.2E-19 138.8 25.2 254 15-294 98-368 (445)
215 KOG2111 Uncharacterized conser 99.7 2.7E-13 5.9E-18 130.2 30.4 236 17-260 7-257 (346)
216 PRK11028 6-phosphogluconolacto 99.7 2E-13 4.2E-18 146.7 33.0 267 73-382 6-304 (330)
217 PRK01742 tolB translocation pr 99.6 9.2E-15 2E-19 161.7 20.4 222 8-240 196-426 (429)
218 KOG0644 Uncharacterized conser 99.6 3.2E-16 6.8E-21 167.5 8.2 238 48-299 181-424 (1113)
219 PF02239 Cytochrom_D1: Cytochr 99.6 3.7E-13 8.1E-18 143.4 31.4 287 9-298 30-344 (369)
220 KOG0322 G-protein beta subunit 99.6 6.7E-15 1.4E-19 137.1 15.2 286 50-381 7-322 (323)
221 KOG2139 WD40 repeat protein [G 99.6 1.1E-13 2.4E-18 134.8 22.6 191 100-295 99-304 (445)
222 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-12 3.1E-17 139.0 33.4 256 28-289 6-286 (369)
223 KOG0771 Prolactin regulatory e 99.6 1E-14 2.2E-19 145.6 15.1 194 61-259 148-354 (398)
224 KOG1240 Protein kinase contain 99.6 1.6E-13 3.5E-18 153.5 25.9 256 4-260 1037-1335(1431)
225 KOG1272 WD40-repeat-containing 99.6 1.8E-15 4E-20 151.7 9.7 230 58-298 130-359 (545)
226 KOG1240 Protein kinase contain 99.6 2.6E-13 5.6E-18 151.9 27.0 262 42-306 1034-1339(1431)
227 KOG1310 WD40 repeat protein [G 99.6 1E-14 2.2E-19 149.1 14.0 168 49-217 42-231 (758)
228 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.9E-19 144.8 14.0 195 19-217 148-354 (398)
229 KOG2321 WD40 repeat protein [G 99.6 3.4E-13 7.4E-18 139.1 24.6 276 13-297 49-339 (703)
230 KOG3881 Uncharacterized conser 99.6 1.9E-13 4E-18 134.9 21.6 260 13-282 53-342 (412)
231 KOG1354 Serine/threonine prote 99.6 2E-13 4.2E-18 132.1 21.2 245 14-262 24-362 (433)
232 PRK03629 tolB translocation pr 99.6 1.3E-12 2.8E-17 144.1 29.8 235 37-282 179-428 (429)
233 KOG1334 WD40 repeat protein [G 99.6 3E-14 6.5E-19 144.0 13.1 254 49-303 134-426 (559)
234 COG5354 Uncharacterized protei 99.5 4.7E-12 1E-16 129.3 28.0 270 12-292 29-336 (561)
235 PRK04922 tolB translocation pr 99.5 1.7E-12 3.7E-17 144.0 27.5 234 37-281 184-432 (433)
236 PRK02889 tolB translocation pr 99.5 7.8E-13 1.7E-17 146.1 24.7 235 37-282 176-425 (427)
237 PF04762 IKI3: IKI3 family; I 99.5 1.8E-08 4E-13 119.4 62.4 234 58-299 22-331 (928)
238 KOG2315 Predicted translation 99.5 5.4E-12 1.2E-16 130.6 28.1 271 15-297 34-380 (566)
239 PRK03629 tolB translocation pr 99.5 1.1E-12 2.4E-17 144.6 24.8 222 9-240 192-428 (429)
240 PRK05137 tolB translocation pr 99.5 4.5E-12 9.7E-17 140.9 29.6 234 37-282 182-433 (435)
241 KOG2315 Predicted translation 99.5 3.4E-11 7.5E-16 124.8 32.9 321 36-408 10-373 (566)
242 KOG2314 Translation initiation 99.5 8.2E-12 1.8E-16 128.5 27.2 335 18-402 213-595 (698)
243 KOG1912 WD40 repeat protein [G 99.5 8.9E-12 1.9E-16 133.0 27.8 442 16-472 16-572 (1062)
244 PRK02889 tolB translocation pr 99.5 1.5E-12 3.2E-17 143.9 22.0 222 9-240 189-425 (427)
245 COG5354 Uncharacterized protei 99.5 5.9E-11 1.3E-15 121.4 31.0 243 40-290 15-293 (561)
246 PRK04922 tolB translocation pr 99.5 2.5E-12 5.4E-17 142.7 22.4 222 8-239 196-432 (433)
247 KOG1409 Uncharacterized conser 99.5 1.9E-12 4.1E-17 125.6 18.3 212 4-218 13-271 (404)
248 KOG2394 WD40 protein DMR-N9 [G 99.5 6.1E-13 1.3E-17 136.2 15.4 137 15-152 219-384 (636)
249 KOG2394 WD40 protein DMR-N9 [G 99.5 1.6E-12 3.5E-17 133.2 18.2 245 17-281 125-384 (636)
250 PRK05137 tolB translocation pr 99.5 7.2E-12 1.6E-16 139.3 25.2 222 8-240 194-433 (435)
251 KOG3881 Uncharacterized conser 99.5 3.1E-12 6.7E-17 126.4 19.4 221 13-240 103-342 (412)
252 COG4946 Uncharacterized protei 99.5 3E-09 6.5E-14 107.9 39.5 181 108-296 275-468 (668)
253 KOG0974 WD-repeat protein WDR6 99.4 2E-10 4.4E-15 127.7 31.8 197 16-218 88-289 (967)
254 PF08662 eIF2A: Eukaryotic tra 99.4 2E-11 4.4E-16 117.9 20.9 152 19-178 9-183 (194)
255 KOG2314 Translation initiation 99.4 1.4E-10 3.1E-15 119.6 27.2 306 60-408 213-556 (698)
256 PF08662 eIF2A: Eukaryotic tra 99.4 3.3E-11 7.1E-16 116.5 20.9 156 103-267 9-186 (194)
257 KOG1354 Serine/threonine prote 99.4 6.8E-11 1.5E-15 114.8 22.3 239 57-299 25-357 (433)
258 TIGR02800 propeller_TolB tol-p 99.4 1.3E-10 2.9E-15 129.6 28.7 232 37-279 170-416 (417)
259 PRK00178 tolB translocation pr 99.4 1.8E-10 4E-15 128.4 29.1 234 38-282 180-428 (430)
260 PRK04792 tolB translocation pr 99.4 2.6E-10 5.6E-15 126.4 27.6 234 38-282 199-447 (448)
261 KOG1920 IkappaB kinase complex 99.3 7.2E-08 1.6E-12 109.6 45.2 194 99-299 68-320 (1265)
262 PRK00178 tolB translocation pr 99.3 2.7E-10 5.8E-15 127.1 24.9 222 9-240 192-428 (430)
263 PF10282 Lactonase: Lactonase, 99.3 1.6E-08 3.5E-13 108.5 37.5 266 30-297 2-318 (345)
264 PRK01029 tolB translocation pr 99.3 8.3E-10 1.8E-14 121.3 27.9 240 37-283 165-426 (428)
265 TIGR02800 propeller_TolB tol-p 99.3 2.8E-10 6E-15 127.0 24.7 219 9-237 183-416 (417)
266 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.3E-13 109.9 35.7 263 15-279 36-345 (345)
267 KOG4547 WD40 repeat-containing 99.3 5.3E-10 1.1E-14 117.2 24.2 190 24-218 2-221 (541)
268 PRK01029 tolB translocation pr 99.3 6.7E-10 1.5E-14 122.0 26.1 227 9-241 178-426 (428)
269 KOG2321 WD40 repeat protein [G 99.3 7.3E-11 1.6E-15 122.2 16.7 195 20-217 138-343 (703)
270 PRK04792 tolB translocation pr 99.3 4.9E-10 1.1E-14 124.2 23.7 222 10-240 212-447 (448)
271 KOG0280 Uncharacterized conser 99.3 5.9E-10 1.3E-14 106.3 20.4 258 28-288 25-318 (339)
272 KOG0974 WD-repeat protein WDR6 99.3 1.7E-10 3.7E-15 128.4 19.2 268 16-300 8-287 (967)
273 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.9E-08 8.5E-13 102.3 35.6 261 26-297 11-326 (352)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.1E-08 4.6E-13 104.2 32.2 240 23-267 53-338 (352)
275 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.3E-14 113.8 23.7 187 67-259 3-220 (541)
276 KOG2114 Vacuolar assembly/sort 99.2 2.5E-08 5.3E-13 109.1 33.0 465 193-782 31-536 (933)
277 KOG1064 RAVE (regulator of V-A 99.2 3.1E-11 6.8E-16 140.0 11.7 200 11-226 2204-2407(2439)
278 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.3E-14 104.6 19.8 240 16-257 70-331 (339)
279 TIGR03300 assembly_YfgL outer 99.2 1.3E-08 2.7E-13 111.7 31.0 255 27-298 65-335 (377)
280 TIGR03300 assembly_YfgL outer 99.2 1.4E-08 3.1E-13 111.3 29.4 256 26-297 104-375 (377)
281 KOG1409 Uncharacterized conser 99.2 3.5E-09 7.6E-14 103.3 20.0 246 49-300 16-269 (404)
282 KOG3616 Selective LIM binding 99.1 3E-09 6.6E-14 113.4 19.9 138 645-782 563-720 (1636)
283 PLN02919 haloacid dehalogenase 99.1 1.1E-07 2.4E-12 115.3 33.7 238 19-263 571-892 (1057)
284 KOG1064 RAVE (regulator of V-A 99.1 6E-10 1.3E-14 129.8 11.9 196 56-268 2207-2407(2439)
285 KOG4532 WD40-like repeat conta 99.1 3.5E-08 7.5E-13 93.1 21.2 238 20-259 72-331 (344)
286 COG2706 3-carboxymuconate cycl 99.0 1.7E-06 3.8E-11 86.2 33.3 210 36-248 15-262 (346)
287 COG5170 CDC55 Serine/threonine 99.0 2E-08 4.4E-13 96.4 19.0 238 57-298 26-364 (460)
288 COG5170 CDC55 Serine/threonine 99.0 7.1E-09 1.5E-13 99.5 15.8 240 14-257 25-365 (460)
289 KOG0309 Conserved WD40 repeat- 99.0 2.5E-09 5.4E-14 114.1 13.2 282 15-299 24-337 (1081)
290 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.1E-06 4.6E-11 81.1 30.4 189 27-226 23-215 (354)
291 PF15492 Nbas_N: Neuroblastoma 99.0 6.2E-07 1.3E-11 86.7 27.6 236 20-269 2-269 (282)
292 PRK04043 tolB translocation pr 99.0 9.2E-08 2E-12 104.4 25.0 190 17-217 189-400 (419)
293 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.5E-14 112.5 9.1 241 50-297 728-984 (1034)
294 COG4946 Uncharacterized protei 99.0 3.5E-07 7.6E-12 93.2 26.4 146 13-162 357-507 (668)
295 PRK04043 tolB translocation pr 99.0 4.6E-07 9.9E-12 99.0 29.6 210 37-259 169-400 (419)
296 COG2706 3-carboxymuconate cycl 99.0 2.5E-06 5.5E-11 85.1 31.6 251 11-265 35-329 (346)
297 KOG3914 WD repeat protein WDR4 99.0 1.2E-08 2.7E-13 102.1 14.7 161 17-181 64-231 (390)
298 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.4E-14 110.1 9.9 279 9-297 729-1032(1034)
299 PLN02919 haloacid dehalogenase 98.9 9.3E-07 2E-11 107.4 32.9 234 61-299 571-886 (1057)
300 KOG0309 Conserved WD40 repeat- 98.9 7.7E-09 1.7E-13 110.4 12.7 243 18-260 70-340 (1081)
301 KOG1832 HIV-1 Vpr-binding prot 98.9 7.4E-10 1.6E-14 120.2 5.0 266 4-290 1090-1378(1516)
302 PF08450 SGL: SMP-30/Gluconola 98.9 3.2E-06 6.9E-11 86.4 31.6 218 62-290 4-244 (246)
303 PF13360 PQQ_2: PQQ-like domai 98.9 6E-07 1.3E-11 91.6 25.7 221 36-266 2-237 (238)
304 KOG4532 WD40-like repeat conta 98.9 3E-07 6.4E-12 87.0 20.6 226 34-270 49-293 (344)
305 PRK11138 outer membrane biogen 98.9 1.8E-06 3.9E-11 94.9 30.3 259 26-297 68-349 (394)
306 KOG4714 Nucleoporin [Nuclear s 98.9 1.2E-08 2.5E-13 95.9 10.7 152 23-174 97-255 (319)
307 PF08450 SGL: SMP-30/Gluconola 98.9 4.8E-06 1E-10 85.1 31.1 217 20-248 4-244 (246)
308 PRK11138 outer membrane biogen 98.8 1.8E-06 3.9E-11 94.9 27.8 258 27-297 120-390 (394)
309 PF04053 Coatomer_WDAD: Coatom 98.8 2.5E-05 5.4E-10 84.9 35.0 185 228-488 31-219 (443)
310 PF07433 DUF1513: Protein of u 98.8 6.7E-06 1.4E-10 82.4 27.9 230 16-254 5-280 (305)
311 KOG3914 WD repeat protein WDR4 98.8 9.5E-08 2.1E-12 95.9 14.1 160 60-226 65-232 (390)
312 KOG4649 PQQ (pyrrolo-quinoline 98.8 3.7E-05 7.9E-10 73.0 29.9 187 111-317 23-213 (354)
313 KOG4714 Nucleoporin [Nuclear s 98.8 1.2E-07 2.7E-12 89.2 13.4 197 18-218 39-255 (319)
314 KOG1832 HIV-1 Vpr-binding prot 98.8 5E-09 1.1E-13 113.9 4.0 220 48-287 1092-1317(1516)
315 KOG0882 Cyclophilin-related pe 98.7 1.5E-07 3.3E-12 95.3 13.8 249 14-268 8-314 (558)
316 PF07433 DUF1513: Protein of u 98.7 2.6E-05 5.7E-10 78.2 29.0 227 59-295 6-279 (305)
317 KOG1275 PAB-dependent poly(A) 98.7 7.4E-07 1.6E-11 98.3 19.1 181 69-257 147-340 (1118)
318 KOG3621 WD40 repeat-containing 98.7 5.9E-06 1.3E-10 89.3 23.4 205 14-224 32-252 (726)
319 KOG1275 PAB-dependent poly(A) 98.6 6.5E-07 1.4E-11 98.7 16.1 182 27-216 147-341 (1118)
320 KOG2066 Vacuolar assembly/sort 98.6 1.1E-06 2.3E-11 96.1 17.1 182 15-217 39-233 (846)
321 PF13360 PQQ_2: PQQ-like domai 98.6 3E-05 6.5E-10 79.0 27.1 211 77-298 1-227 (238)
322 KOG2695 WD40 repeat protein [G 98.6 1.9E-07 4.1E-12 91.5 9.3 161 64-228 218-387 (425)
323 KOG2114 Vacuolar assembly/sort 98.6 6.4E-06 1.4E-10 90.8 21.9 203 22-229 30-256 (933)
324 PF15492 Nbas_N: Neuroblastoma 98.6 1.7E-05 3.7E-10 76.9 22.2 196 18-227 46-269 (282)
325 PF00930 DPPIV_N: Dipeptidyl p 98.6 4.8E-05 1E-09 82.1 28.1 263 24-291 1-347 (353)
326 KOG2695 WD40 repeat protein [G 98.5 2.7E-07 5.8E-12 90.5 8.5 151 115-271 228-388 (425)
327 cd00216 PQQ_DH Dehydrogenases 98.5 0.00011 2.3E-09 82.9 29.4 262 27-297 61-420 (488)
328 PF14583 Pectate_lyase22: Olig 98.5 0.00077 1.7E-08 70.1 32.3 245 43-292 16-303 (386)
329 KOG1645 RING-finger-containing 98.4 8E-06 1.7E-10 82.1 16.4 251 4-259 182-461 (463)
330 KOG1645 RING-finger-containing 98.4 2.3E-05 4.9E-10 79.0 18.5 253 39-297 175-457 (463)
331 cd00216 PQQ_DH Dehydrogenases 98.4 0.00019 4.2E-09 80.9 28.3 234 28-270 111-435 (488)
332 KOG0882 Cyclophilin-related pe 98.4 7.8E-06 1.7E-10 83.3 14.0 209 56-268 8-240 (558)
333 PF00400 WD40: WD domain, G-be 98.4 1.6E-06 3.5E-11 59.1 6.6 39 47-85 1-39 (39)
334 PRK02888 nitrous-oxide reducta 98.4 0.0049 1.1E-07 68.3 36.4 257 30-299 69-402 (635)
335 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4E-11 58.7 6.3 39 89-127 1-39 (39)
336 PF06433 Me-amine-dh_H: Methyl 98.3 0.00082 1.8E-08 68.5 27.7 247 19-270 39-331 (342)
337 KOG2066 Vacuolar assembly/sort 98.3 5E-05 1.1E-09 83.5 19.1 155 11-173 54-233 (846)
338 PF14583 Pectate_lyase22: Olig 98.3 0.0015 3.2E-08 68.0 28.8 272 22-297 42-377 (386)
339 COG5290 IkappaB kinase complex 98.3 0.001 2.3E-08 73.0 28.5 135 642-776 824-988 (1243)
340 PF06977 SdiA-regulated: SdiA- 98.2 0.00058 1.3E-08 68.0 23.9 201 9-214 15-247 (248)
341 KOG1008 Uncharacterized conser 98.2 3.5E-07 7.5E-12 97.0 1.0 199 15-217 56-275 (783)
342 PF08596 Lgl_C: Lethal giant l 98.2 0.00077 1.7E-08 72.5 25.4 265 17-290 3-325 (395)
343 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0027 5.9E-08 69.4 29.5 211 20-242 33-272 (410)
344 PRK02888 nitrous-oxide reducta 98.1 0.00077 1.7E-08 74.4 24.2 216 26-260 140-405 (635)
345 COG0823 TolB Periplasmic compo 98.1 0.00017 3.8E-09 78.2 18.6 183 10-198 187-382 (425)
346 PF02897 Peptidase_S9_N: Proly 98.1 0.0085 1.8E-07 66.6 32.7 243 17-264 125-409 (414)
347 PF08596 Lgl_C: Lethal giant l 98.1 0.0028 6.1E-08 68.2 26.7 229 59-298 3-287 (395)
348 PF11768 DUF3312: Protein of u 98.0 0.00094 2E-08 71.9 22.2 114 58-175 206-331 (545)
349 PF11768 DUF3312: Protein of u 98.0 0.00013 2.9E-09 78.2 15.5 118 18-137 208-337 (545)
350 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0011 2.3E-08 71.7 22.7 231 15-248 42-346 (353)
351 COG0823 TolB Periplasmic compo 98.0 0.00045 9.8E-09 75.1 19.7 204 37-249 173-389 (425)
352 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0094 2E-07 65.3 29.9 192 80-284 62-272 (410)
353 KOG3621 WD40 repeat-containing 98.0 0.00065 1.4E-08 74.1 19.9 139 98-239 32-180 (726)
354 PF06433 Me-amine-dh_H: Methyl 98.0 0.032 6.9E-07 57.3 31.8 253 37-299 17-318 (342)
355 PF06977 SdiA-regulated: SdiA- 98.0 0.0059 1.3E-07 60.9 24.9 200 52-256 16-247 (248)
356 KOG1008 Uncharacterized conser 97.9 4.2E-06 9.2E-11 89.1 1.5 196 99-298 56-272 (783)
357 PF00780 CNH: CNH domain; Int 97.9 0.013 2.9E-07 60.9 27.9 227 25-270 5-266 (275)
358 PF03178 CPSF_A: CPSF A subuni 97.9 0.0056 1.2E-07 65.2 25.1 213 79-297 2-261 (321)
359 COG3391 Uncharacterized conser 97.8 0.031 6.7E-07 60.9 29.8 261 17-282 32-309 (381)
360 COG3391 Uncharacterized conser 97.8 0.052 1.1E-06 59.1 31.3 252 39-297 13-279 (381)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.018 4E-07 65.2 28.0 237 28-270 121-501 (527)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.1 2.2E-06 59.2 33.5 190 69-265 69-339 (527)
363 PF00780 CNH: CNH domain; Int 97.7 0.055 1.2E-06 56.3 29.0 138 154-300 6-165 (275)
364 KOG4640 Anaphase-promoting com 97.7 0.00019 4E-09 77.1 9.6 93 15-108 20-114 (665)
365 PF03178 CPSF_A: CPSF A subuni 97.7 0.032 6.9E-07 59.5 27.0 211 37-256 2-262 (321)
366 KOG4640 Anaphase-promoting com 97.6 0.00029 6.2E-09 75.7 9.8 94 57-151 20-114 (665)
367 PF08553 VID27: VID27 cytoplas 97.6 0.0082 1.8E-07 69.2 21.8 142 154-298 492-645 (794)
368 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.035 7.6E-07 59.6 25.0 89 20-109 6-118 (415)
369 KOG1897 Damage-specific DNA bi 97.5 0.29 6.4E-06 56.4 50.7 455 16-492 354-898 (1096)
370 KOG2280 Vacuolar assembly/sort 97.5 0.16 3.4E-06 56.8 29.0 120 649-779 447-577 (829)
371 PF14870 PSII_BNR: Photosynthe 97.5 0.18 3.9E-06 52.0 32.3 270 99-415 16-301 (302)
372 PF02897 Peptidase_S9_N: Proly 97.4 0.18 3.9E-06 56.0 30.0 222 60-286 126-385 (414)
373 COG3386 Gluconolactonase [Carb 97.4 0.072 1.6E-06 55.3 24.3 218 21-248 30-274 (307)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.012 2.5E-07 67.2 19.5 184 16-213 350-564 (591)
375 COG3204 Uncharacterized protei 97.3 0.046 9.9E-07 54.1 19.8 165 11-175 81-265 (316)
376 PF14870 PSII_BNR: Photosynthe 97.3 0.3 6.5E-06 50.4 30.5 230 56-297 15-257 (302)
377 KOG1897 Damage-specific DNA bi 97.2 0.7 1.5E-05 53.5 42.9 402 58-493 488-943 (1096)
378 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.053 1.2E-06 45.6 15.9 102 188-297 2-110 (111)
379 PRK10115 protease 2; Provision 97.1 0.92 2E-05 53.5 34.5 237 17-262 128-397 (686)
380 PHA02713 hypothetical protein; 97.1 0.034 7.4E-07 63.7 20.2 216 38-263 273-537 (557)
381 KOG4499 Ca2+-binding protein R 97.1 0.15 3.3E-06 48.4 20.3 214 27-246 27-271 (310)
382 COG3490 Uncharacterized protei 97.1 0.2 4.3E-06 49.2 21.4 241 146-416 71-346 (366)
383 PRK13616 lipoprotein LpqB; Pro 97.1 0.046 9.9E-07 62.4 20.4 184 58-255 350-564 (591)
384 KOG2079 Vacuolar assembly/sort 97.1 0.011 2.3E-07 68.1 14.8 110 59-172 89-202 (1206)
385 KOG2444 WD40 repeat protein [G 97.1 0.00072 1.6E-08 63.7 4.8 141 114-259 33-177 (238)
386 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.046 1E-06 46.0 14.8 101 60-168 2-109 (111)
387 COG3386 Gluconolactonase [Carb 97.1 0.17 3.7E-06 52.5 22.7 220 63-290 30-274 (307)
388 PF05694 SBP56: 56kDa selenium 97.1 0.53 1.1E-05 50.0 25.9 192 68-261 86-344 (461)
389 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.65 1.4E-05 50.3 33.7 271 27-307 37-367 (418)
390 COG3204 Uncharacterized protei 97.0 0.15 3.3E-06 50.6 20.3 170 53-225 81-270 (316)
391 PF05096 Glu_cyclase_2: Glutam 97.0 0.29 6.3E-06 48.7 22.6 182 18-206 47-250 (264)
392 KOG2079 Vacuolar assembly/sort 97.0 0.0041 8.9E-08 71.3 10.9 100 26-128 98-202 (1206)
393 PF15390 DUF4613: Domain of un 97.0 0.46 1E-05 51.8 24.8 153 13-173 17-186 (671)
394 smart00320 WD40 WD40 repeats. 96.9 0.003 6.6E-08 41.9 5.8 39 89-127 2-40 (40)
395 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.7E-08 41.9 5.8 39 47-85 2-40 (40)
396 KOG2395 Protein involved in va 96.9 0.043 9.3E-07 58.3 16.0 141 154-297 344-497 (644)
397 PRK13684 Ycf48-like protein; P 96.8 0.88 1.9E-05 48.5 29.0 225 57-297 45-284 (334)
398 PF08553 VID27: VID27 cytoplas 96.8 0.026 5.6E-07 65.3 15.4 136 118-258 501-646 (794)
399 KOG0985 Vesicle coat protein c 96.8 0.021 4.6E-07 65.1 13.9 114 651-764 1087-1248(1666)
400 PF15390 DUF4613: Domain of un 96.8 1.2 2.5E-05 48.9 27.2 150 58-217 20-186 (671)
401 KOG4441 Proteins containing BT 96.8 0.082 1.8E-06 60.4 19.2 229 24-261 282-548 (571)
402 COG3490 Uncharacterized protei 96.7 0.72 1.6E-05 45.5 24.2 242 46-298 57-345 (366)
403 PF13429 TPR_15: Tetratricopep 96.7 0.0028 6.1E-08 66.1 6.3 102 647-748 118-239 (280)
404 TIGR03074 PQQ_membr_DH membran 96.7 0.61 1.3E-05 55.0 25.5 230 27-268 194-486 (764)
405 COG3292 Predicted periplasmic 96.7 0.19 4.2E-06 54.3 19.1 272 15-297 164-443 (671)
406 KOG2247 WD40 repeat-containing 96.5 0.00053 1.1E-08 71.5 -0.4 279 14-301 33-368 (615)
407 KOG4441 Proteins containing BT 96.5 0.14 2.9E-06 58.7 18.9 221 67-297 283-537 (571)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 96.5 0.65 1.4E-05 50.2 22.6 82 142-226 307-407 (415)
409 KOG2444 WD40 repeat protein [G 96.5 0.0033 7.1E-08 59.5 4.5 75 111-185 70-144 (238)
410 PHA02713 hypothetical protein; 96.5 0.25 5.4E-06 56.7 20.7 203 80-293 273-523 (557)
411 KOG4499 Ca2+-binding protein R 96.4 0.9 2E-05 43.5 20.9 205 70-281 28-263 (310)
412 PRK10115 protease 2; Provision 96.4 3 6.6E-05 49.3 29.7 194 59-257 128-342 (686)
413 PLN03081 pentatricopeptide (PP 96.4 0.024 5.2E-07 67.7 12.4 104 647-750 267-387 (697)
414 PF14727 PHTB1_N: PTHB1 N-term 96.4 2 4.3E-05 46.6 29.3 146 111-258 37-203 (418)
415 PF05694 SBP56: 56kDa selenium 96.3 1.4 2.9E-05 47.1 22.8 211 154-384 86-344 (461)
416 KOG2247 WD40 repeat-containing 96.3 0.0011 2.4E-08 69.1 0.3 126 669-823 4-129 (615)
417 PF12894 Apc4_WD40: Anaphase-p 96.3 0.014 3.1E-07 40.7 5.6 35 14-49 10-44 (47)
418 KOG2395 Protein involved in va 96.3 0.075 1.6E-06 56.6 13.2 144 68-217 344-500 (644)
419 PRK13684 Ycf48-like protein; P 96.2 2.2 4.8E-05 45.5 27.1 268 15-298 45-328 (334)
420 TIGR00990 3a0801s09 mitochondr 96.2 0.021 4.5E-07 67.1 10.3 129 620-748 335-492 (615)
421 PF10647 Gmad1: Lipoprotein Lp 96.2 1.1 2.3E-05 45.7 21.2 145 17-165 25-187 (253)
422 KOG3630 Nuclear pore complex, 96.0 0.28 6E-06 57.4 17.1 144 101-247 102-261 (1405)
423 PF12894 Apc4_WD40: Anaphase-p 95.9 0.024 5.2E-07 39.6 5.4 34 57-91 11-44 (47)
424 TIGR03118 PEPCTERM_chp_1 conse 95.9 2.2 4.7E-05 43.0 25.0 221 60-281 25-307 (336)
425 PF05096 Glu_cyclase_2: Glutam 95.9 2.1 4.6E-05 42.7 25.8 193 91-291 35-250 (264)
426 KOG2280 Vacuolar assembly/sort 95.9 0.7 1.5E-05 51.9 18.9 200 78-283 63-271 (829)
427 PF07995 GSDH: Glucose / Sorbo 95.9 3.1 6.8E-05 44.3 27.8 234 17-254 3-330 (331)
428 KOG0550 Molecular chaperone (D 95.8 0.017 3.6E-07 59.6 5.9 153 668-827 249-432 (486)
429 TIGR03074 PQQ_membr_DH membran 95.8 1.5 3.3E-05 51.8 22.7 114 155-269 194-354 (764)
430 PLN03218 maturation of RBCL 1; 95.8 0.062 1.3E-06 65.8 11.7 130 619-748 475-639 (1060)
431 PLN03218 maturation of RBCL 1; 95.7 0.13 2.8E-06 63.1 13.9 148 601-748 419-604 (1060)
432 PLN03077 Protein ECB2; Provisi 95.7 0.087 1.9E-06 64.8 12.8 106 647-752 331-453 (857)
433 PHA03098 kelch-like protein; P 95.3 0.47 1E-05 54.8 16.7 184 67-261 293-513 (534)
434 PLN03081 pentatricopeptide (PP 95.3 0.16 3.4E-06 60.8 13.1 154 601-762 373-554 (697)
435 PHA03098 kelch-like protein; P 95.3 0.76 1.6E-05 53.1 18.3 146 27-176 295-467 (534)
436 PRK11788 tetratricopeptide rep 95.1 0.22 4.9E-06 54.8 12.6 75 621-695 112-207 (389)
437 PF10168 Nup88: Nuclear pore c 95.1 6.1 0.00013 46.5 24.2 94 143-262 85-182 (717)
438 KOG1898 Splicing factor 3b, su 95.0 10 0.00022 44.9 32.6 99 28-126 550-668 (1205)
439 TIGR00990 3a0801s09 mitochondr 94.9 0.19 4.2E-06 59.1 12.0 44 651-694 445-493 (615)
440 KOG2076 RNA polymerase III tra 94.9 0.18 3.8E-06 57.7 10.7 102 653-762 153-267 (895)
441 COG1520 FOG: WD40-like repeat 94.9 7.2 0.00016 42.5 30.1 193 29-228 70-279 (370)
442 PRK11788 tetratricopeptide rep 94.8 0.15 3.2E-06 56.3 10.3 130 620-749 73-240 (389)
443 KOG1155 Anaphase-promoting com 94.8 0.2 4.4E-06 52.7 10.1 87 665-762 429-533 (559)
444 PF10647 Gmad1: Lipoprotein Lp 94.8 5.5 0.00012 40.5 22.1 142 59-206 25-184 (253)
445 TIGR02604 Piru_Ver_Nterm putat 94.6 8.3 0.00018 41.9 22.6 140 59-204 15-200 (367)
446 KOG4626 O-linked N-acetylgluco 94.6 0.41 8.9E-06 52.3 11.9 49 647-695 294-347 (966)
447 PRK15174 Vi polysaccharide exp 94.5 0.31 6.7E-06 57.4 12.2 149 600-748 54-237 (656)
448 PF10602 RPN7: 26S proteasome 94.4 0.19 4.1E-06 47.7 8.4 83 668-750 36-140 (177)
449 PHA02790 Kelch-like protein; P 94.4 1.6 3.4E-05 49.4 17.2 180 68-260 271-471 (480)
450 KOG3630 Nuclear pore complex, 94.4 0.45 9.7E-06 55.7 12.3 140 145-288 103-260 (1405)
451 PF14938 SNAP: Soluble NSF att 94.3 0.19 4.1E-06 52.3 8.9 104 654-779 30-143 (282)
452 TIGR03118 PEPCTERM_chp_1 conse 94.2 7.1 0.00015 39.6 24.2 218 18-239 25-307 (336)
453 PRK15363 pathogenicity island 94.2 0.61 1.3E-05 42.4 10.6 106 621-747 12-127 (157)
454 PHA02790 Kelch-like protein; P 94.2 1.8 3.9E-05 48.9 17.0 143 27-176 272-426 (480)
455 PLN03077 Protein ECB2; Provisi 94.2 0.28 6.1E-06 60.3 11.5 156 600-763 536-718 (857)
456 PF10168 Nup88: Nuclear pore c 94.2 15 0.00033 43.2 24.7 80 59-138 86-188 (717)
457 KOG1983 Tomosyn and related SN 94.1 2 4.4E-05 52.5 18.1 231 15-263 35-268 (993)
458 PRK11447 cellulose synthase su 94.1 0.59 1.3E-05 59.4 14.5 102 649-750 583-698 (1157)
459 PRK15174 Vi polysaccharide exp 93.9 0.73 1.6E-05 54.3 13.7 99 650-748 223-343 (656)
460 KOG2003 TPR repeat-containing 93.8 0.41 8.9E-06 50.0 9.7 164 595-758 426-648 (840)
461 PF07995 GSDH: Glucose / Sorbo 93.8 11 0.00024 40.1 29.1 231 59-296 3-330 (331)
462 KOG2076 RNA polymerase III tra 93.5 0.44 9.6E-06 54.6 10.2 107 598-735 149-266 (895)
463 TIGR02604 Piru_Ver_Nterm putat 93.4 4.1 9E-05 44.2 17.6 140 16-160 14-200 (367)
464 KOG1898 Splicing factor 3b, su 93.4 21 0.00046 42.4 31.1 70 15-84 582-668 (1205)
465 TIGR02521 type_IV_pilW type IV 93.4 0.88 1.9E-05 45.4 11.8 47 649-695 75-126 (234)
466 KOG2377 Uncharacterized conser 93.2 1.5 3.3E-05 46.2 12.7 139 20-162 27-172 (657)
467 TIGR02917 PEP_TPR_lipo putativ 93.2 0.89 1.9E-05 56.5 13.9 127 622-748 709-862 (899)
468 PRK10370 formate-dependent nit 93.2 0.66 1.4E-05 45.1 10.0 85 665-749 70-170 (198)
469 PF12234 Rav1p_C: RAVE protein 93.1 3 6.6E-05 47.5 15.9 111 145-258 32-155 (631)
470 TIGR02917 PEP_TPR_lipo putativ 93.1 0.76 1.7E-05 57.1 13.0 75 620-694 537-627 (899)
471 KOG1916 Nuclear protein, conta 93.0 0.073 1.6E-06 60.2 3.2 117 9-128 126-264 (1283)
472 KOG2377 Uncharacterized conser 92.8 3.2 6.9E-05 43.9 14.1 126 71-199 35-167 (657)
473 PF10313 DUF2415: Uncharacteri 92.7 0.49 1.1E-05 32.0 5.5 32 16-47 1-35 (43)
474 PF14761 HPS3_N: Hermansky-Pud 92.6 10 0.00023 36.5 16.6 102 28-131 29-165 (215)
475 COG3292 Predicted periplasmic 92.5 16 0.00035 40.3 19.3 148 57-215 164-316 (671)
476 PRK09782 bacteriophage N4 rece 92.4 2 4.3E-05 52.6 14.5 94 651-744 521-630 (987)
477 PF13424 TPR_12: Tetratricopep 92.4 1.4 3.1E-05 35.0 9.4 73 669-761 6-78 (78)
478 smart00036 CNH Domain found in 92.3 16 0.00035 38.2 30.2 230 27-269 13-280 (302)
479 COG3063 PilF Tfp pilus assembl 92.2 1.6 3.4E-05 42.1 10.4 109 654-764 57-185 (250)
480 PRK11447 cellulose synthase su 92.1 1.3 2.9E-05 56.3 13.3 74 623-696 580-665 (1157)
481 COG3823 Glutamine cyclotransfe 92.0 8.8 0.00019 36.4 14.6 173 27-205 56-247 (262)
482 PF12895 Apc3: Anaphase-promot 92.0 0.45 9.8E-06 38.7 6.0 75 652-748 2-83 (84)
483 KOG4626 O-linked N-acetylgluco 91.7 0.56 1.2E-05 51.4 7.7 45 651-695 196-245 (966)
484 PF10433 MMS1_N: Mono-function 91.7 29 0.00062 39.7 37.8 283 15-300 43-388 (504)
485 PF14938 SNAP: Soluble NSF att 91.7 2.1 4.5E-05 44.5 12.0 21 740-760 159-179 (282)
486 PF12234 Rav1p_C: RAVE protein 91.5 3.3 7.2E-05 47.1 13.9 110 17-128 31-155 (631)
487 PRK09782 bacteriophage N4 rece 91.5 1.6 3.4E-05 53.5 12.1 43 653-695 590-636 (987)
488 PF13432 TPR_16: Tetratricopep 91.3 0.27 5.9E-06 37.5 3.8 46 649-694 7-57 (65)
489 KOG1840 Kinesin light chain [C 91.3 0.35 7.6E-06 53.6 5.9 19 621-639 204-222 (508)
490 PRK15359 type III secretion sy 91.3 2.1 4.5E-05 39.1 10.2 80 648-748 33-117 (144)
491 COG5290 IkappaB kinase complex 91.2 0.76 1.7E-05 51.6 8.1 97 667-764 934-1036(1243)
492 PF14761 HPS3_N: Hermansky-Pud 91.1 15 0.00033 35.4 19.3 55 234-290 22-78 (215)
493 PF10313 DUF2415: Uncharacteri 91.1 1.1 2.4E-05 30.4 5.8 32 100-131 1-35 (43)
494 PF13429 TPR_15: Tetratricopep 91.0 1 2.3E-05 46.8 9.0 12 600-611 20-31 (280)
495 PF10433 MMS1_N: Mono-function 90.9 34 0.00073 39.1 37.0 250 29-281 2-309 (504)
496 PF08728 CRT10: CRT10; InterP 90.9 8.6 0.00019 44.4 16.3 144 27-172 49-245 (717)
497 TIGR02521 type_IV_pilW type IV 90.8 1.7 3.7E-05 43.3 10.3 98 651-748 43-160 (234)
498 KOG4460 Nuclear pore complex, 90.7 5.2 0.00011 43.2 13.3 97 144-265 105-204 (741)
499 KOG0686 COP9 signalosome, subu 90.7 0.8 1.7E-05 47.7 7.2 83 668-750 150-256 (466)
500 PF13176 TPR_7: Tetratricopept 90.6 0.34 7.3E-06 31.8 3.1 23 671-693 2-24 (36)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-147 Score=1118.99 Aligned_cols=793 Identities=67% Similarity=1.169 Sum_probs=781.4
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002493 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~ 82 (915)
+++++++++..|+++|+++.|||..+|++++.++|.|.|||++++.+++++...+-||++..|.+..+|+++|++|+.|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
||+++|+++++.|.+|++.|+|++.+|+.++++++|+|.+|++||++.++.+.+++.+|.+.|++++|+|+|.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC
Q 002493 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 242 (915)
.|++|++|.+.++.+.+++.+|..+|+|++|.+.|++|||++|++|.+|++||+++..|++++.+|..+|+.++|+|.-+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCce
Q 002493 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i 322 (915)
++++||+||+|+||+..|+++..+++...+++|+++-.+.++.+++|+++|.+.+.++++.|.++|+.+|+++|+.++++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEecC-C
Q 002493 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD-G 401 (915)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~-~ 401 (915)
+..++++......+.||+++++..+++++++.+|+.+++||+|+++++|+||+++||+...||++.+|....++|++| +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSN 400 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCC
Confidence 999999988877899999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEecCCeEEEeccCccceeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEEccccEEEEcCCCCEEEEE
Q 002493 402 EYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 481 (915)
Q Consensus 402 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~ 481 (915)
.|++..+++.|+++ ++|++.+++++.++.+.|+||.+|++.+++.++||||++++++++++...+.+.|+.+|.+++++
T Consensus 401 e~avRes~~~vki~-knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 401 EFAVRESNGNVKIF-KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIA 479 (794)
T ss_pred eEEEEecCCceEEE-ecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEecCCCEEEEE
Confidence 88888889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEecccc
Q 002493 482 SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRP 561 (915)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (915)
+++.+|++.||++.+....+++..++++|.+++|+.+.+..+.++++.|.+|||+|++.+++++|+++++..++.+++.+
T Consensus 480 ~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~ 559 (794)
T KOG0276|consen 480 GDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI 559 (794)
T ss_pred ecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccC
Q 002493 562 MYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATD 641 (915)
Q Consensus 562 ~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~al~~~~~ 641 (915)
+|+++|+++++|+|+.|++.++++|.+.+.+++||++++|+|++.|.++|++|+.++++++++|++++|++++||+++.|
T Consensus 560 mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D 639 (794)
T KOG0276|consen 560 MYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD 639 (794)
T ss_pred hhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002493 642 PDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (915)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~ 721 (915)
|+++|+++|++|+++.|+++|.+.+++.+|++||++|++.+++.+|.+||.+++|+.+|+++|...|+.+++.+++..+.
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCC
Q 002493 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYS 796 (915)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~ 796 (915)
++|++|.||.|+++.|++++|++++++++|++||+.|||+|+|+++++++.+|++.|.+.++|+|++|++|++|+
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k~~~sladp~~~~ 794 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEKAAESLADPEEYS 794 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhhhhhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-83 Score=675.47 Aligned_cols=720 Identities=27% Similarity=0.524 Sum_probs=630.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
..++...+.+|..++|||..+|++++..+|.|++||++-+.++..|..|++||+.+.|+|++..+++|++|-.|+||+++
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.+++.++.+|-+.|+.+.|++.-++|+++|+|.+|+||++.++ .+..++.+|.++|+|..|+| ....++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence 99999999999999999999999999999999999999999998 89999999999999999999 88999999999999
Q ss_pred EEEECCCCC-----------------------------CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002493 168 KIWNLGSPD-----------------------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 168 ~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++||+..-+ ..+.+.+|..+|+.++|+|.-. +|++|++|+.|++|.+..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEecc
Confidence 999985310 1245678999999999998665 899999999999999875
Q ss_pred Cc--EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002493 219 KS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 219 ~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~ 296 (915)
.+ .+.+..+|.++|+++-|+|...+|++.|+|++|++||+.....++++....++.|.++.+|..+.+++|.+.|.+.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 44 3567789999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---C
Q 002493 297 VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---D 373 (915)
Q Consensus 297 i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---~ 373 (915)
+.+.+++|.++++.+ .+++.+...++.+++.+.. ......++..+..-.++.++.++|....+.+|+ +
T Consensus 318 FkleRErpa~~v~~n-~LfYvkd~~i~~~d~~t~~--------d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 318 FKLERERPAYAVNGN-GLFYVKDRFIRSYDLRTQK--------DTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred EEEcccCceEEEcCC-EEEEEccceEEeeeccccc--------cceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 999999999999865 4566668888887764421 112233444455567889999999988888884 6
Q ss_pred CcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceee--cCcEEEEe
Q 002493 374 GEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY--GGTLLAMC 443 (915)
Q Consensus 374 ~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~--~g~~La~~ 443 (915)
+.+.+|.+.... ....++.....|-..+++++... +..+.+-++..+..+.+...-+.+.|+ |...|...
T Consensus 389 ~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 389 GEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR 468 (1202)
T ss_pred CeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE
Confidence 777777654331 11223445666777777777766 567777766665555555444555555 44567777
Q ss_pred eCCeEEEEeccCCcEEEEEEc-cccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeee
Q 002493 444 SNDFICFYDWAECRLIRRIDV-TVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETN 522 (915)
Q Consensus 444 ~~~~v~~~d~~~~~~i~~~~~-~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 522 (915)
+.+.|.+||++..+.+..+.. .++.+.||.|+.++|..++..+.+...+.+. ...++| .
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l-------------------~~sihE-t 528 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLEL-------------------LCSIHE-T 528 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhh-------------------eecchh-e
Confidence 778999999999998888884 8999999999999999999999987533222 344455 6
Q ss_pred eeEEeeEEecC-EEEEEccCCeEEEEE-CCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHH
Q 002493 523 ERVRTGLWVGD-CFIYNNSSWRLNYCV-GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM 600 (915)
Q Consensus 523 ~~i~~~~w~~d-~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 600 (915)
.+|++++|+++ +|||+|. ++|.|.+ +|+.+.+..++.+.|+.. .+++.+||+++++.+....++.....|..+++
T Consensus 529 iriksgawde~gVfiYtT~-nHikYal~~GD~GIikTLd~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy~FKlALi 605 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYTTL-NHIKYALENGDSGIIKTLDKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEYRFKLALL 605 (1202)
T ss_pred eEeeeceeccCceEEEEeh-hhhhhhhccCCcceEEecccceEEEE--eeCCEEEEEecCCCeEEEeechHHHHHHHHHH
Confidence 79999999996 9999998 8999988 899999999999999988 58999999999999999999999999999999
Q ss_pred ccCHHHHhhhcCCCCcchH--HHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHH
Q 002493 601 RGDLERANEILPSIPKEHH--NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELA 678 (915)
Q Consensus 601 ~~~~~~a~~~~~~i~~~~~--~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~a 678 (915)
++++++...+ |....+ +.+..||+++|+++.||++.+|+..+|+++|+.|+++.|++.|++++++..|+.||+.|
T Consensus 606 ~k~ydeVl~l---I~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~A 682 (1202)
T KOG0292|consen 606 NKKYDEVLHL---IKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEA 682 (1202)
T ss_pred hhhhHHHHHH---HHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999987666 444444 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHH
Q 002493 679 MSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALM 758 (915)
Q Consensus 679 l~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~l 758 (915)
+.+||.++||.||++.+++++|.+||..+|+.+++.+++++|+..++..--++.++|+||.++-++++..+++.+.|..-
T Consensus 683 l~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 683 LRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred HHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCch
Q 002493 759 ARSYLPSK 766 (915)
Q Consensus 759 ar~~~~~~ 766 (915)
|.+++.+.
T Consensus 763 a~~~G~~~ 770 (1202)
T KOG0292|consen 763 AAAHGLED 770 (1202)
T ss_pred HhhcCcHH
Confidence 99999754
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=3.4e-68 Score=566.91 Aligned_cols=433 Identities=59% Similarity=1.051 Sum_probs=358.4
Q ss_pred CceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEec
Q 002493 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSS 399 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 399 (915)
+++++++++.... ..||+.+++..++++.+..+|+.+.++|+|++++++++|.+.+|+...++++.+|....++|++
T Consensus 2 ~~i~~~~~~~~~~---~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 2 NEIRTANLKNISE---IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS 78 (443)
T ss_dssp TEEEEEE--S--------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T
T ss_pred CceEEEECcCCCc---cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec
Confidence 5677788777654 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCeEEEeccCcccee--eeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEEcc-ccEEEEcCCCC
Q 002493 400 DGEYAVRESSSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVT-VKNLYWADSGD 476 (915)
Q Consensus 400 ~~~~l~~~~~~~v~v~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~~~-i~~v~~s~dg~ 476 (915)
+++|++..++++|.|+ .+++... .+...++.+.|++|.+|++.+++.|++|||++++.+++++.. |+.|.||++|+
T Consensus 79 ~n~yAv~~~~~~I~I~-kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIY-KNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGE 157 (443)
T ss_dssp SSEEEEE-TTS-EEEE-ETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSS
T ss_pred CccEEEEECCCeEEEE-EcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCC
Confidence 9999999989999997 5565555 677788999999999999999999999999999999999975 79999999999
Q ss_pred EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEE
Q 002493 477 LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMF 556 (915)
Q Consensus 477 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~~~~~~~~~ 556 (915)
++|+.+++.++++.++.+.+.. .+++|.+++|+.++|+..+|++++|++|+|+|+|.+ +|+|+++|+.+++.
T Consensus 158 ~val~t~~~i~il~~~~~~~~~-------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~ 229 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAA-------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIA 229 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHH-------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEE
T ss_pred EEEEEeCCeEEEEEecchhccc-------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEE
Confidence 9999999999999999988776 667899999999999999999999999999999995 99999999999999
Q ss_pred ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHH------HhhhcCCCCcchHHHHHHHHHhCC
Q 002493 557 HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLER------ANEILPSIPKEHHNSVARFLESRG 630 (915)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~~~~i~~~~~~~~~~~~~~~~ 630 (915)
+++.++|++++.++.+++|++|+++++..+.+++.+++|+++++++|++. +..++++||.++++++++||+++|
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred ChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH
Q 002493 631 MIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA 710 (915)
Q Consensus 631 ~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~ 710 (915)
+++.|+++++||+++|+|+|++|+++.|+++|++++++.+|++||+.|+.+|++++|++||.+++|+++|.+||...||.
T Consensus 310 ~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 310 YPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp -HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred CHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002493 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (915)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~ 764 (915)
++++++++++...|+.+.||++++++||+++|++++++++|+++|+.+||+|+|
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-49 Score=379.03 Aligned_cols=329 Identities=24% Similarity=0.368 Sum_probs=295.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||++||+|+.||.|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcee-EEEecCCCCEEEEEEcC-----CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 88 TMDKV-KVFEAHTDYIRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 88 ~~~~~-~~~~~~~~~i~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
+|+.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+ .+...+.+|+.+|+|+.|- +..++++|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEec
Confidence 98876 56889999999999976 5678999999999999999987 8888999999999999997 47899999
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC-----------CC-----------------------cCEEEEEeC
Q 002493 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----------GD-----------------------KPYLITGSD 207 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~-----------------------~~~l~~~~~ 207 (915)
+.|++|++|+...|.....+++|...|+.++.+.+ +. ...+++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 99999999999999999999999999999988721 21 124999999
Q ss_pred CCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEE
Q 002493 208 DHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 208 dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 286 (915)
|.++.+|+... .+++..+.+|..-|..+.||||+++|++++.|.+|++|+..+|+.+.++.+|...|+.++|+.|.++|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 99999999754 55888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002493 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (915)
Q Consensus 287 ~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (915)
++|+.|.++.+|.-+... -..++..|...+..+.|+|||+
T Consensus 425 VS~SkDsTLKvw~V~tkK----------------------------------------l~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKK----------------------------------------LKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred EEcCCCceEEEEEeeeee----------------------------------------ecccCCCCCceEEEEEecCCCc
Confidence 999999999997311110 0234677888899999999999
Q ss_pred EEEEEc-CCcEEEE
Q 002493 367 FVVVCG-DGEYIIY 379 (915)
Q Consensus 367 ~lav~~-~~~~~i~ 379 (915)
.++.++ |..+.+|
T Consensus 465 rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 465 RVASGGKDKVLRLW 478 (480)
T ss_pred eeecCCCceEEEee
Confidence 999888 5556665
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.7e-43 Score=349.62 Aligned_cols=459 Identities=21% Similarity=0.335 Sum_probs=365.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEE
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIR 82 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~ 82 (915)
....+..|+..++-..|||.|.|+|+|...|+|+|||....+ +..+++...++|..++|++++++|++.++ +...+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 345678999999999999999999999999999999976533 23457788999999999999999988765 33444
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
++-.++|..+..+.+|+..|.+++|-|..+ ++++|++|++|.+|.-.-. +....+..|...|.|+.|+| |++.|++.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysP-DG~~Fat~ 208 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSP-DGSRFATA 208 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECC-CCCeEEEe
Confidence 444457889999999999999999999887 4889999999999986654 66677888999999999999 89999999
Q ss_pred ECCCcEEEEECCCCCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE---------------
Q 002493 162 SLDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--------------- 223 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------- 223 (915)
+.||+|.+||-.+++.+..+. +|++.|..++|+|++. .+++++.|.+++|||..+.++++
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 999999999999999998887 8999999999999998 59999999999999987765443
Q ss_pred ----------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeee-ecCCccE
Q 002493 224 ----------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERV 274 (915)
Q Consensus 224 ----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v 274 (915)
.+.+|...|+++..+|++++|++|+.||.|.-|+..++..-... ..|...|
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 24578999999999999999999999999999999887755433 5677888
Q ss_pred EEEEEecCCCEEEEEecCCeEEE-------------ecCCCcceeEecCCC-cEEEEeeCceEEEEeeecccceeccCCc
Q 002493 275 WAIGYMKSSRRIVIGYDEGTIMV-------------KIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 275 ~~i~~~~~~~~l~~g~~dg~v~i-------------~~~~~~~~~~~~~~g-~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
.+++.+..+.++.+|.+|..-++ .++.++...+...++ .++.....++.+++- ..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~-----------~~ 435 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD-----------QT 435 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec-----------CC
Confidence 89888876666655555544333 344555555555554 555556666655441 11
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCe
Q 002493 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSK 411 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~-~~~ 411 (915)
.+.. ......+.+++++|+++.+|+++ |+++++|.+.... ..+.+.++++++|||+.|++++. .++
T Consensus 436 ~~~~-----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 436 KVSS-----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred ccee-----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 1110 12345678999999999999999 9999999887643 34568899999999999999988 799
Q ss_pred EEEeccCccceeeeec----------CcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE----ccccEEEEcCCCC
Q 002493 412 IKIFSKNFQEKRSVRP----------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID----VTVKNLYWADSGD 476 (915)
Q Consensus 412 v~v~~~~~~~~~~~~~----------~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~----~~i~~v~~s~dg~ 476 (915)
+.+||+..++.....+ +++|+ ..+||+++-| .|.+|+++.......++ ..|+.+.|-.+.+
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST 586 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCce
Confidence 9999987665544333 55666 8899999999 99999998765443333 3699999998876
Q ss_pred EEEEEeCCeEEEE
Q 002493 477 LVAIASDTSFYIL 489 (915)
Q Consensus 477 ~la~~~~~~~~~~ 489 (915)
.+.++.+..+-+|
T Consensus 587 vvSsG~Da~iK~W 599 (603)
T KOG0318|consen 587 VVSSGQDANIKVW 599 (603)
T ss_pred EEeccCcceeEEe
Confidence 6555544444454
No 6
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=8.5e-44 Score=365.08 Aligned_cols=670 Identities=15% Similarity=0.196 Sum_probs=468.7
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+....| .|..++|-|||..|+.+. +..+.|||.+.|...+++++|...|.|++|+.||+.+++|+.|..|.+|+.+-
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred hccccc--chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 334445 799999999999888876 55799999999999999999999999999999999999999999999998542
Q ss_pred CceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 89 MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 89 ~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
...++ .|.+.|.||.|+|-...|++|+-. ..-+|+.+...... ......+.+++|+. |+.+|+.|-.+|+|
T Consensus 85 ---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtn-DGqylalG~~nGTI 156 (1081)
T KOG1538|consen 85 ---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTN-DGQYLALGMFNGTI 156 (1081)
T ss_pred ---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecC-CCcEEEEeccCceE
Confidence 22332 699999999999999999999875 46789876542211 12346788999998 99999999999999
Q ss_pred EEEECCCCCCceEEe---cCCCCeeEEEEEeCC---CcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002493 168 KIWNLGSPDPNFTLD---AHQKGVNCVDYFTGG---DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
.+-+- ++++...+. +...+|.+++|+|+. ....+++.....++.++.+. |+.+..-+...-...|+.+.|+|
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC
Confidence 99864 444444443 367889999999963 33478888999999999886 66655444445556789999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCc
Q 002493 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
.+++.|+.|+.+++|. +.|-.+.++......||+++..|+++.+++|+.||++..+..-...+.+++.+......+..+
T Consensus 235 Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtD 313 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTD 313 (1081)
T ss_pred cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHH
Confidence 9999999999999998 668888888878889999999999999999999999988654445555554443333333333
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcc-----ce-eEE
Q 002493 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFG-----SA-LEF 395 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~-----~~-~~~ 395 (915)
+.+.+ +..++.+.+..+++ +..++.-. ..|||--..++.+|...+.+..... .+ ..+
T Consensus 314 VivQh---------Li~~qkvrIkC~DL------VkKiaiYr--nrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf 376 (1081)
T KOG1538|consen 314 VIVQH---------LITEQKVRIKCKDL------VKKIAIYR--NRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKF 376 (1081)
T ss_pred HHHHH---------HhhcceeeeeHHHH------HHHHHhhh--hhheecccceEEEEeccccccccchhHHHHHHHhhc
Confidence 32222 33445454444442 33344333 3478877888999977665433221 11 111
Q ss_pred EEe---cCCcEEEEecCCeEEEeccCccceeeeecCccc----ceee----cCcEEEEeeCC--eEEEE-eccCCcEEEE
Q 002493 396 VWS---SDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSA----ERIY----GGTLLAMCSND--FICFY-DWAECRLIRR 461 (915)
Q Consensus 396 ~~s---~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~----~~i~----~g~~La~~~~~--~v~~~-d~~~~~~i~~ 461 (915)
.+| -.+..++...+.++.-+| |.+.....+.+.. -.+. |..-|.+|..+ ..++| |-.-.-++.+
T Consensus 377 ~cSLlVVc~~HiVlCqekrLqClD--F~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~ 454 (1081)
T KOG1538|consen 377 ECSLLVVCANHIVLCQEKRLQCLD--FSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK 454 (1081)
T ss_pred cceEEEEEcCeEEEEcccceeeec--ccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec
Confidence 111 133444555555565554 3332221110000 0001 23456666655 44444 3222233344
Q ss_pred EEccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEec---CEEEEE
Q 002493 462 IDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG---DCFIYN 538 (915)
Q Consensus 462 ~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~---d~~i~~ 538 (915)
-...|+++.+|.+.+.||+.++...+.|. .+.++ +.+.+ +..+.+..|.. ++|.|+
T Consensus 455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~--------DI~t~------------elL~Q-Epg~nSV~wNT~~E~MlcfT 513 (1081)
T KOG1538|consen 455 QATAVRCLDINASRKKLAVVDDNDTCLVY--------DIDTK------------ELLFQ-EPGANSVAWNTQCEDMLCFT 513 (1081)
T ss_pred ccceeEEeeccCCcceEEEEccCCeEEEE--------EccCC------------ceEee-cCCCceEEeeccccceEEEe
Confidence 34589999999999999999999998875 11111 22323 45667788884 899998
Q ss_pred ccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcch
Q 002493 539 NSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEH 618 (915)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~ 618 (915)
+. |.++.-.+..+. ...+...+++|| ++++++|+- ..++....+......
T Consensus 514 ~~-g~L~VR~~~~P~--h~qk~~G~VvG~--~gsk~FCL~-~~~i~~~evp~~~~m------------------------ 563 (1081)
T KOG1538|consen 514 GG-GYLNVRASTFPV--HRQKLQGFVVGY--NGSKIFCLH-VFSISAVEVPQSAPM------------------------ 563 (1081)
T ss_pred cC-CceEEEeccCCc--chhcceEEEEEe--cCceEEEEE-eeeeecccccccccc------------------------
Confidence 87 777665543332 123334567776 588888862 211211111111100
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc
Q 002493 619 HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS 698 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~ 698 (915)
..+++.|.+++|+++++.......|+.||..|+...++++|.++|.+.+|..
T Consensus 564 ----------------------------~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~ 615 (1081)
T KOG1538|consen 564 ----------------------------YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR 615 (1081)
T ss_pred ----------------------------hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH
Confidence 2235778899999999999999999999999999999999999999999998
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcC--CchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-chHHHHH----
Q 002493 699 GLLLLYSSLGDAEGISKLASLAKEQG--KNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIV---- 771 (915)
Q Consensus 699 ~l~~l~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~-~~~~~~~---- 771 (915)
.|.+ +.+|.+...... +..+-+..+.+.|+|.||.++|.++|+-+.|++|..++.+ ..+++.+
T Consensus 616 ~L~l----------i~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 616 YLEL----------ISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHH----------HHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 8777 556655554433 2223344455889999999999999999999999999876 5566665
Q ss_pred HHHHHhhhhcChhhhhhcCCCccCCCccc
Q 002493 772 AIWRKDLQKVNPKAAESLADPEEYSNLFD 800 (915)
Q Consensus 772 ~~~~~~L~~~~~~~a~~l~~~~~~~~~~~ 800 (915)
.+-|+.|..++..+|....+|....+|+.
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLi 714 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLI 714 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhh
Confidence 56778888888888888888887777765
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-44 Score=343.09 Aligned_cols=325 Identities=21% Similarity=0.352 Sum_probs=285.4
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+..++.+|..+|.|+.|+|+|..|++|+.|.++++||+.|..+..+.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEcc----CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+++......+.+|...|++++|.| .....|++++.||+|+|||+..++.+..+.+|..+|+|++|- |.+ +|++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~g-liyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEG-LIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCc-eEEe
Confidence 999889999999999999999987 256789999999999999999999999999999999999994 333 8999
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe-----------CCCC-------------------------EEEEEE
Q 002493 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----------PELP-------------------------IIITGS 248 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~~~~ 248 (915)
|+.|++|++|+...|.+...+++|...|+.++.+ |.+. .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999877 2232 499999
Q ss_pred cCCcEEEEeCCC-cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEe
Q 002493 249 EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNI 327 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 327 (915)
.|+++.+|+... .+++....+|..-|..+.||||++++|+++-|..|++|.++.. +.+..
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~las---------- 404 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLAS---------- 404 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhh----------
Confidence 999999999654 3477788889899999999999999999999999999865433 22211
Q ss_pred eecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc-----cCccceeEEEEecCC
Q 002493 328 KSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN-----RSFGSALEFVWSSDG 401 (915)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~s~~~ 401 (915)
+..|-..+..++||.|.++|+.|+ |.++.+|++...+. .+...+.++.|+|||
T Consensus 405 ---------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 405 ---------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred ---------------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 233444667899999999999999 89999998877652 245688999999999
Q ss_pred cEEEEec-CCeEEEec
Q 002493 402 EYAVRES-SSKIKIFS 416 (915)
Q Consensus 402 ~~l~~~~-~~~v~v~~ 416 (915)
+.++++. |.-+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9998887 67788883
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=346.68 Aligned_cols=458 Identities=18% Similarity=0.324 Sum_probs=378.7
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC--------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~ 86 (915)
..+|.|+.|||+|+++|+|. .+.+.||..... ...+++.+|...|.++.|+.|.++|++|+.|..+++|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 57899999999999999987 568999986542 234567788899999999999999999999999999999
Q ss_pred CCCce--eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC-----------------------Cee--------
Q 002493 87 NTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK-----------------------GWM-------- 133 (915)
Q Consensus 87 ~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~-----------------------~~~-------- 133 (915)
+..+. ...+.+|.++|....|..+...+++.+.||.+.+|.... +..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87666 566789999999999999999999999999999998761 000
Q ss_pred E--EEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC-Ce
Q 002493 134 C--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-HT 210 (915)
Q Consensus 134 ~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~ 210 (915)
. ...+......|++.+|++ ..+.|++|-..|...+|.+.....+..+.-...+|..+.|+..|+ +|+.|+.. |.
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA~g~~klgQ 331 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIAFGCSKLGQ 331 (893)
T ss_pred EEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEEEcCCccce
Confidence 0 111222347799999999 889999999999999999999999999988889999999998888 89988765 89
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
+-+|+.++...+...++|...+++++++|||+++++|+.||.|++||...+-+..++..|...|+.+.|+..|+.+++.+
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCCC----------c----ceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002493 291 DEGTIMVKIGRE----------E----PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 291 ~dg~v~i~~~~~----------~----~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
-||+|+.|.... . ...+.+++|.++.+...+..-+-+ |++++|+.+-+ +..|+.+|
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv------WS~qTGqllDi----LsGHEgPV 481 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV------WSVQTGQLLDI----LSGHEGPV 481 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE------EEeecCeeeeh----hcCCCCcc
Confidence 999999985321 1 234667889888887766655543 56788886654 68899999
Q ss_pred ceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccce-------
Q 002493 357 QSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK------- 422 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~------- 422 (915)
.+++|+|.|..|++++ |.++.+|++.... ......++.++|+|||+-+++.+ +|.|.+||.+....
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR 561 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence 9999999999999999 9999999886542 23446789999999998877777 99999999431000
Q ss_pred ---------------------eeee-cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE----------------
Q 002493 423 ---------------------RSVR-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---------------- 463 (915)
Q Consensus 423 ---------------------~~~~-~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~---------------- 463 (915)
+.+. ..+++| |..+.+++.. .||+||+.++-++++++
T Consensus 562 kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~ 637 (893)
T KOG0291|consen 562 KDLSGGRKETDRITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR 637 (893)
T ss_pred hhccccccccceeehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence 0111 156666 6666665555 99999998876555332
Q ss_pred -------------------------------------------ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 464 -------------------------------------------VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 -------------------------------------------~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|.+|.+||+|+.+|+++..++.++.
T Consensus 638 rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYs 707 (893)
T KOG0291|consen 638 RKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYS 707 (893)
T ss_pred ccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEe
Confidence 135678999999999999999988864
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-43 Score=344.76 Aligned_cols=283 Identities=25% Similarity=0.365 Sum_probs=272.1
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCc
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
|-+.+|..+.||+++..|+||+-+|.++||+..+...+.+|.+|...|.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999997 5689999999999999999989
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.+..+.+|...|..++|+|+|++|++++.|.+-++||++++ .......+|...|.+++|+| ||.++++|+.|..-+||
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW 330 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999998 55566789999999999999 99999999999999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEEEEEc
Q 002493 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~ 249 (915)
|++++.++..+.+|.++|..+.|+|+|- .+++|+.|++++|||++..+.+.++.+|..-|+.++|+| .|.+|++++.
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCce--EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999998 699999999999999999999999999999999999999 7889999999
Q ss_pred CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
|++++||...++.+++++.+|.+.|.++..+++++.+++++.|.++++|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999983
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-41 Score=316.58 Aligned_cols=291 Identities=23% Similarity=0.422 Sum_probs=273.3
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
++...+.|+||.+.|.++.|++|+++|++++.||.+.|||.-+...++.++.....|..++|+|.|+++|+|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 45567899999999999999999999999999999999999998888889989999999999999999999999999999
Q ss_pred EECCCC------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCE
Q 002493 84 YNYNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 84 wd~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (915)
|++.+. ...+.+.+|.+++.|+.|.+|+ .|+++|.|.+..+||++++ +..+.|.+|.+.|+++.++|.+++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCe
Confidence 999865 3456788999999999999855 6999999999999999999 8888999999999999999989999
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--CccCeEEE
Q 002493 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAV 235 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i 235 (915)
|++|+.|++.++||++.+...+.|.+|...|++++|.|+|. -+++|++|++.++||++..+.+..+.. ...+|+++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999998 599999999999999999988877763 34579999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+||..|++|++|..|..+.+||.-.++.+..+.+|..+|.++..+|||.-+++|+.|..+++|
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 11
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=6e-40 Score=329.40 Aligned_cols=686 Identities=15% Similarity=0.194 Sum_probs=455.4
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEE-EeC-------CCCEE
Q 002493 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAK-FVA-------RKQWV 72 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~-------~~~~l 72 (915)
|.++..+.++- .|+..|.|+.|+.+...+.++ .|..+.+|.--+..........+.-|.... .-+ ....|
T Consensus 1 mklk~~~~~k~-r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 1 MKLKTRICKKN-RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred Cccchhhhhcc-ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceE
Confidence 66666666655 588999999999988755555 566777765444333322222221111111 111 23578
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEcc
Q 002493 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (915)
+.++.||.+.+.+ +.++....+.+|.+.|.+-.|+|+|.-|+++++||.|++|.-. | .+..++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-MLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-MLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-hHHHHHhhcCceeEEEEECC
Confidence 9999999999998 4577788889999999999999999999999999999999854 4 45566666678899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCe
Q 002493 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 232 (915)
+.++.+.+.+ +.+.+=.+.....+...+.|.+-|.++.|++.++ ++++|+.|-..++||.. |..+..-..|..+|
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc--ceeecCCceeEEeeccc-CcccccCChhccce
Confidence 6566666544 6677777777777888899999999999999887 89999999999999965 88888888899999
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCC
Q 002493 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g 312 (915)
++++|.|+ ..++.+|.+ ++|+= ....+.|..++||+||..+++|+..|.+.+--.-+... ...++
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l--~~~n~ 295 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQL--VSGNL 295 (737)
T ss_pred eeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhh--hhccc
Confidence 99999999 677777754 55522 12347789999999999999999999998721110000 01122
Q ss_pred cEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccce
Q 002493 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA 392 (915)
Q Consensus 313 ~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~ 392 (915)
+........+.+.++.+.. . ...+.+-+.+.++-.-.+|++++..++++|....|+....-..
T Consensus 296 ~~t~~~r~~I~vrdV~~~v---------~--------d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidg 358 (737)
T KOG1524|consen 296 KATSKSRKSITVRDVATGV---------Q--------DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDG 358 (737)
T ss_pred eeEeeccceEEeehhhhhH---------H--------HHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEec
Confidence 3333333333333322111 0 0111222345566666889999999999999888864421110
Q ss_pred e--EEEEecCC-cEEEEecCCeEEEeccCccceeeeec------Ccccceee-cCcEEEEeeCC---eEEEEec-cCCcE
Q 002493 393 L--EFVWSSDG-EYAVRESSSKIKIFSKNFQEKRSVRP------TFSAERIY-GGTLLAMCSND---FICFYDW-AECRL 458 (915)
Q Consensus 393 ~--~~~~s~~~-~~l~~~~~~~v~v~~~~~~~~~~~~~------~~s~~~i~-~g~~La~~~~~---~v~~~d~-~~~~~ 458 (915)
. ....--.+ ++.......+|.+|..+.+.+...+. ..+...+. +...|+...+. .+.+||. .+|+.
T Consensus 359 re~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~ 438 (737)
T KOG1524|consen 359 REDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKR 438 (737)
T ss_pred cccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcc
Confidence 0 00000112 33444444567776544333222221 01111111 35577776644 8899998 77765
Q ss_pred EEE-----EEccccEEEEc----CCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeE
Q 002493 459 IRR-----IDVTVKNLYWA----DSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529 (915)
Q Consensus 459 i~~-----~~~~i~~v~~s----~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~ 529 (915)
... ++..|..++.+ ++.+.+++.+..+-+.+-.- ..+ |.+ +.+..++..+.+.+
T Consensus 439 qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~Itsv-----Krf---------gke---e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 439 QGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSV-----KRF---------GKE---EEIYKIGTMVHTLA 501 (737)
T ss_pred cCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEee-----hhc---------Cch---hhhhhhhhhhhhhh
Confidence 432 22345555555 35567888777665544210 000 011 11223466677777
Q ss_pred Eec--CEEEEEccCC-eEEEEECCEEe-------EEE-----ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHH
Q 002493 530 WVG--DCFIYNNSSW-RLNYCVGGEVT-------TMF-----HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIE 594 (915)
Q Consensus 530 w~~--d~~i~~~~~~-~l~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 594 (915)
|.+ ++++-..++. .+.||.+.-.. ++. .+.+.+.+..| -++.+.+...+|.+.-..+ ..
T Consensus 502 wndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqvtirrsdG~LlpisV----~p 575 (737)
T KOG1524|consen 502 WNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQVTIRRSDGALLPISV----NP 575 (737)
T ss_pred hccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEEEEEeccCceEeeec----cc
Confidence 876 4555444422 23344321110 111 11122223332 2445555445554332222 12
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHH
Q 002493 595 YKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQL 674 (915)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~l 674 (915)
|..-+ .+ ++.-++|++|.++|+...+..+|..|
T Consensus 576 y~~iL-----------------------~e------------------------~~sssKWeqavRLCrfv~eqTMWAtl 608 (737)
T KOG1524|consen 576 YPEIL-----------------------HE------------------------YLSSSKWEQAVRLCRFVQEQTMWATL 608 (737)
T ss_pred cHHHH-----------------------HH------------------------HhccchHHHHHHHHHhccchHHHHHH
Confidence 21111 00 13557899999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchH
Q 002493 675 GELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPE 754 (915)
Q Consensus 675 a~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~ 754 (915)
|.+|..+.++.++|.+|..+++.+++.++.......++-.++|+.....|+...|..++++.|.+.+|+.+.+++..|..
T Consensus 609 Aa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~R 688 (737)
T KOG1524|consen 609 AAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRR 688 (737)
T ss_pred HHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999999999988887788899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHH
Q 002493 755 AALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAV 808 (915)
Q Consensus 755 A~~lar~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 808 (915)
|+|++.+|. +.++.+++..+++|+..+++ +...+|..|...+|+
T Consensus 689 ALEl~~K~K-~~v~~Vl~yR~KyLk~~g~~---------EtdplyL~~~~~~ei 732 (737)
T KOG1524|consen 689 ALELSQKHK-ELVPRVLQYRRKYLKALGRE---------ETDPLYLPLVAKEEI 732 (737)
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHhccc---------ccCchhhhhhhhccc
Confidence 999999997 68899999999999876654 444556665554444
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-38 Score=316.47 Aligned_cols=426 Identities=17% Similarity=0.262 Sum_probs=341.5
Q ss_pred hcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002493 10 KLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
.+.||+.+|.+++|-|..+ ++++|+.|+.|.+|+-..-+...++..|..-|+|+.|+|||.++++.+.||.|.+||=.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4679999999999999988 588999999999999777788888888999999999999999999999999999999999
Q ss_pred CceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-cCC--ccEEEEEEccCCCCEEEEEE
Q 002493 89 MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS--HYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 89 ~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~~v~~~~~~p~~~~~l~~~~ 162 (915)
|+++..+. +|.+.|.+++|+||+..+++++.|.+++|||+.++ .+.+.+. +.. .....+.|. +..|++.+
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq---kd~lItVS 297 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS 297 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence 99999998 89999999999999999999999999999999998 5555443 222 344556674 56899999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCC
Q 002493 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPEL 241 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~ 241 (915)
.+|+|.+++...+.+...+.+|...|+++..+++++ +|++|+.||.|.-|+..++..-... ++|...|.+++.+..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 999999999999999999999999999999999986 8999999999999999988765443 6788999999988765
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeee--eecCCccEEEEEEecCCCEEEEEecCCeEEEe---------cCCCcceeEecC
Q 002493 242 PIIITGSEDGTVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK---------IGREEPVASMDN 310 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~---------~~~~~~~~~~~~ 310 (915)
.+++.+.|.++++.++.....-.. +....++ .+++..+++..+++.+.++.+.+. ++-..+..++.+
T Consensus 376 -~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 376 -ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred -cEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 467777888999998754332221 2333333 388888888888888888887775 233455667777
Q ss_pred CCcEEEEe--eCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc
Q 002493 311 SGKIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR 387 (915)
Q Consensus 311 ~g~~~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~ 387 (915)
++..+... +..++++.+... .... .-.+..+...++.+++||||.+||++. .+++.+|+......+
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~---------~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGD---------ELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred CCCEEEEecccceEEEEEecCC---------cccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 77777664 344555554332 2111 111245677899999999999999998 899999988765432
Q ss_pred ------CccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceee-----cCcEEEEeeCC-eEEEEecc
Q 002493 388 ------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY-----GGTLLAMCSND-FICFYDWA 454 (915)
Q Consensus 388 ------~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~-----~g~~La~~~~~-~v~~~d~~ 454 (915)
+...+.+++|+|+++.+|+++ |..|.||+++.+....+....++..+. +...|++.+.| .|++|.+.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 346789999999999999999 999999998876655333244444333 57788888888 99999864
No 13
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=333.28 Aligned_cols=434 Identities=19% Similarity=0.290 Sum_probs=356.5
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|+|+.-+|+...||+|-.||.|+||+..++....++.+|...|+++.|...|..|++|+.|+.|.+||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999877778889
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 002493 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
.+|.+.|+.+-|..+.+++++++.|+.|++||+++. .+..+...|...++.+++.+ +.+++++.|+.+++|++...
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecc
Confidence 999999999999998899999999999999999998 88888889999999999975 78999999999999997100
Q ss_pred ------------------------CC------------------------------------------------------
Q 002493 176 ------------------------DP------------------------------------------------------ 177 (915)
Q Consensus 176 ------------------------~~------------------------------------------------------ 177 (915)
+.
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ----------------------------------------------------------------ceEEecCCCCeeEEEE
Q 002493 178 ----------------------------------------------------------------NFTLDAHQKGVNCVDY 193 (915)
Q Consensus 178 ----------------------------------------------------------------~~~~~~~~~~v~~~~~ 193 (915)
...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0122345566777777
Q ss_pred EeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc
Q 002493 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (915)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (915)
+.+.. ++..+..+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+..++.+...|.+.
T Consensus 382 S~d~~---~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga 456 (888)
T KOG0306|consen 382 SSDSI---LLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA 456 (888)
T ss_pred ecCce---eeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence 76553 44445578999999999999999974 37889999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002493 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 274 v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
+|+++.+||+..+++|+.|.+|.+|...-.. +.....+ +++.+ ...+. -..+
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~--~~~gt~~---------k~lsl---------~~~rt--------Lel~ 508 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVV--SVPGTQK---------KVLSL---------KHTRT--------LELE 508 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEe--ccCcccc---------eeeee---------ccceE--------Eecc
Confidence 9999999999999999999999998322110 0000000 00111 00010 1123
Q ss_pred cCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccc-eeee
Q 002493 354 LYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-KRSV 425 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~-~~~~ 425 (915)
..+.++.+||||++||++- |+++.+|.....+ ..+.-++.|+..|||++.+++++ |..|+||-++|.. ++++
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 3567999999999999998 9999999766554 22345889999999999999999 8999999988753 2222
Q ss_pred e-------c-CcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 426 R-------P-TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 426 ~-------~-~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
. . .|-|+ ..++-+++.+ .|+.||-+.-+.++.+.+ .|++++.+|+|.++++++.|..+++|
T Consensus 589 fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 1 1 56666 6777777777 999999988888888874 89999999999999999998888877
No 14
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.4e-39 Score=331.33 Aligned_cols=711 Identities=11% Similarity=0.110 Sum_probs=455.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---------------TMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 78 (915)
......|++|+....++|+|+.||.++|..+.+. ...+++.+|+..|.-+.|+.+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456899999999999999999999999987653 2346778999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEE--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCC
Q 002493 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (915)
|.|.||-+-.|.....+ ....+.|.+|+|+.+|..|++...||.|.+-.+++++...+.+++.. ...+.|++ |..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~-D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSE-DLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecc-cHH
Confidence 99999998877655433 24567899999999999999999999999999988755555554432 45788999 788
Q ss_pred EEEEEECCCcEEEEECCCCC-------C----ceEEecCCCCeeEEEEEeC------CCcCEEEEEeCCCeEEEEECCCC
Q 002493 157 TFASASLDRTIKIWNLGSPD-------P----NFTLDAHQKGVNCVDYFTG------GDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~-------~----~~~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.++.+-.+|.+.+||....- + ...+......+..+.|... .+.|.++++..+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888889999999975431 0 0111223334667777643 25668999999999999876654
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcC---------CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
.....+. ....+..+.|+++|..|++++.+ +.|.+|. .-|..+.+++.+...|++++|-..|-.++.+-
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 4433443 23568899999999999998864 3577776 44888899999999999999999988888765
Q ss_pred cCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002493 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
|+.+.+-.-++.-.+.......++.....+..
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p----------------------------------------------- 359 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELP----------------------------------------------- 359 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCc-----------------------------------------------
Confidence 45555522222222222111111111000000
Q ss_pred EcCCcEEEEEeeccc--ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceeecCcEEEEeeCCe
Q 002493 371 CGDGEYIIYTALAWR--NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDF 447 (915)
Q Consensus 371 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~ 447 (915)
.-.+.+|+..... .+......+++++.+-..++... ++.+.-++. .. .++.. ..|..+.
T Consensus 360 --~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~-le-------~~~~~-----~~l~LCN--- 421 (1189)
T KOG2041|consen 360 --QYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYST-LE-------NRSRV-----YFLQLCN--- 421 (1189)
T ss_pred --ceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhh-hh-------cccce-----EEEeeec---
Confidence 0113334433221 11122233444443333333333 233332210 00 01100 0000000
Q ss_pred EEEEeccCCcEEEEEEccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhC------CC----CCCcc---ccccc
Q 002493 448 ICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDS------GK----PVDEQ---GVEDA 514 (915)
Q Consensus 448 v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~---~~~~~ 514 (915)
+-|..+..--..|.-....-++..+++++.+.+++|.|..+.....+.. +. ..++. +....
T Consensus 422 ------SIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 422 ------SIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred ------ccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 0000000000012222223345567777777777777654333322111 11 11111 11111
Q ss_pred -eeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEec--ccceEEEEEEeeCCEEEEEecCCceEEEEecc-
Q 002493 515 -FELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHL--DRPMYLLGYLASQSRVYLIDKEFNVMGYTLLL- 590 (915)
Q Consensus 515 -f~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~- 590 (915)
...+....+.|+..+..+.+|+....+|.|+-+..........+ ....|.+.+.++.+|+.++|..|.+..+.|+.
T Consensus 496 s~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d 575 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYD 575 (1189)
T ss_pred cceeeccCCCcceeeeecceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccc
Confidence 12222346778888899999999999999987765555544444 45678889999999999999999888777753
Q ss_pred ---hHHHHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHh------------------------------CCChhhhhh
Q 002493 591 ---SLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLES------------------------------RGMIEEAIE 637 (915)
Q Consensus 591 ---~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~~al~ 637 (915)
..+..-...+|+|.|+-.-.-.+ ..+..+.+| .-..++.+.
T Consensus 576 ~~g~ql~~~~~~errDVWd~~Wa~dN------p~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~ 649 (1189)
T KOG2041|consen 576 FDGDQLKLIYTSERRDVWDYEWAQDN------PNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILL 649 (1189)
T ss_pred cCcceeeeeehhhhhhhhhhhhccCC------chHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhHhc
Confidence 11121244568899982111000 000011111 011112221
Q ss_pred cccCcccee------------eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHH
Q 002493 638 VATDPDYRF------------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYS 705 (915)
Q Consensus 638 ~~~~~~~~f------------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~ 705 (915)
..+.|.... .-.+....+++|.+++...++|.+|+.||++|+.+.+++.|+++|.|++||.|+-+
T Consensus 650 ~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~--- 726 (1189)
T KOG2041|consen 650 TPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL--- 726 (1189)
T ss_pred CcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH---
Confidence 222222111 11245667899999999999999999999999999999999999999999999888
Q ss_pred hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC-hh
Q 002493 706 SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN-PK 784 (915)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~-~~ 784 (915)
+++|..+..+ -.....+..+.|+|++|+++|++++|.+.|++|+++++.+. +++++.+.--.... +-
T Consensus 727 -------vkrl~~i~s~---~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwf--rV~qL~r~g~~d~dD~~ 794 (1189)
T KOG2041|consen 727 -------VKRLRTIHSK---EQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWF--RVYQLIRNGGSDDDDEG 794 (1189)
T ss_pred -------HHHhhhhhhH---HHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHH--HHHHHHHccCCCcchHH
Confidence 6666555543 23334455578999999999999999999999999999865 77777776322221 22
Q ss_pred hhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCccc
Q 002493 785 AAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (915)
Q Consensus 785 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (915)
+..+..+.+++ |.+..+|.++.++|........++++|
T Consensus 795 ~e~A~r~ig~~---fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 795 KEDAFRNIGET---FAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 33444444566 899999999999999988887778777
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=326.38 Aligned_cols=463 Identities=15% Similarity=0.266 Sum_probs=373.1
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
...+.+++++.+||+.+|+++...+.+++|++++++.++.++. |++||..++|+|.+..+++|+.|+.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456799999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCCCE--EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPY--VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
.+.|++|++.|.++.|+|+-.+ |++|..|+++++||+.....+...+..|.+.|+++.|++ ++..+++++.|..+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEE
Confidence 9999999999999999997654 789999999999999977677788889999999999999 8999999999999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeC---CCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEE
Q 002493 170 WNLGSPDPNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIII 245 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~ 245 (915)
||+.+-+...+++ -...+-++.+-++ +++.++++.+.+|.+++||..+++++...... ...+..+...+....++
T Consensus 219 wd~~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 219 WDLVQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred eehhhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 9997766665554 3445666666665 22348999999999999999998876554433 23366666666555566
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE-ecCCCEEEEEecCCeEEEec----------CCCcceeEec--CCC
Q 002493 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY-MKSSRRIVIGYDEGTIMVKI----------GREEPVASMD--NSG 312 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-~~~~~~l~~g~~dg~v~i~~----------~~~~~~~~~~--~~g 312 (915)
..+.|..+.+||..+.++...+.+..+.|.+++| .|..++|++++..+.++++. ++...+.+++ .+|
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 6677889999999999999999888899999986 46779999999999999873 4445556665 455
Q ss_pred cEEEEee--CceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEEc-CCcEEEEEeeccc---
Q 002493 313 KIIWAKH--NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVCG-DGEYIIYTALAWR--- 385 (915)
Q Consensus 313 ~~~~~~~--~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~~-~~~~~i~~~~~~~--- 385 (915)
.++.+.. +.+.. |.+.++............+...+..++++..|- ++++++ |..+.+|.....+
T Consensus 378 ~llat~sKD~svil---------Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVIL---------WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred cEEEEecCCceEEE---------EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 4444422 22332 323333333344444566777888999987764 666555 9999999776521
Q ss_pred -----------ccCccceeEEEEecCCcEEEEec-CCeEEEeccCc-------cceee-e-ecCcccceeecCcEEEEee
Q 002493 386 -----------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-------QEKRS-V-RPTFSAERIYGGTLLAMCS 444 (915)
Q Consensus 386 -----------~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~~~~~-~-~~~~s~~~i~~g~~La~~~ 444 (915)
..+-..+.+++.+|+.+++++++ |.+.+||+++. .+++. + ...|++. .++|++++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~----dq~laT~S 524 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN----DQLLATCS 524 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc----cceeEecc
Confidence 11235678999999999999999 89999999762 22222 1 1178887 89999999
Q ss_pred CC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 445 ND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 445 ~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
.| +|++|.+++..++.++++ .|..+.|-.+|+.|++++.++++.+|
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99 999999999999999996 68888999999999999999999887
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=307.68 Aligned_cols=429 Identities=15% Similarity=0.233 Sum_probs=348.7
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--- 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~--- 89 (915)
.+...|++++.||+|.+|++....|...+-++.....++.+. .+.+|.|+.|||+|+++|+|.. +.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN 130 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc
Confidence 466789999999999999999999999999988887777776 5678999999999999998864 67999986432
Q ss_pred -----ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 90 -----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 -----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
...+++.+|.+.|.++.|+.|.++|++|+.|.++++|+++..+. ....+.+|..+|..+.|.. +...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEEEEec
Confidence 23456678999999999999999999999999999999986532 3567889999999999988 8888999999
Q ss_pred CCcEEEEECCC-----------------------CCC-----ce------EEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 164 DRTIKIWNLGS-----------------------PDP-----NF------TLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 164 dg~i~i~d~~~-----------------------~~~-----~~------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
||.+.+|.... ++. .. -+......|++.+|++..+ +|++|...|
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~--~lvvgFssG 287 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN--LLVVGFSSG 287 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce--EEEEEecCC
Confidence 99999998751 010 00 0112236788999998777 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEE
Q 002493 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
...+|.+....+++.+.-...+|..++|+..|.+|+.|+.. |.+-+|+..+...+...++|..++.+++++|||+++|+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999999999999999888999999999999999998765 89999999988888888999999999999999999999
Q ss_pred EecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002493 289 GYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 289 g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
|++||.|++|..... -++ -.+..|...++.+.|+..|+.+
T Consensus 368 G~eDgKVKvWn~~Sg------------------------------------fC~----vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSG------------------------------------FCF----VTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ccCCCcEEEEeccCc------------------------------------eEE----EEeccCCCceEEEEEEecCCEE
Confidence 999999999732221 111 1134566678899999999999
Q ss_pred EEEc-CCcEEEEEeecccc------cCccceeEEEEecCCcEEEEec-C-CeEEEeccCccceee---------eecCcc
Q 002493 369 VVCG-DGEYIIYTALAWRN------RSFGSALEFVWSSDGEYAVRES-S-SKIKIFSKNFQEKRS---------VRPTFS 430 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~-~-~~v~v~~~~~~~~~~---------~~~~~s 430 (915)
.+.+ ||++..|+....++ ....+..|++..|.|..++.++ + =.|+||+++...... ....|+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 9888 99999999887653 2334567888888899988887 4 469999966432221 122688
Q ss_pred cceeecCcEEEEeeCC-eEEEEeccCC-cEEEEEE--ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 431 AERIYGGTLLAMCSND-FICFYDWAEC-RLIRRID--VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 431 ~~~i~~g~~La~~~~~-~v~~~d~~~~-~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
|+ +.+|++++.| +|++||+-.. ..+.+++ ..+..+.|.|||+.||+++-++-+-+|
T Consensus 488 ~~----~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 488 PD----GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred cc----cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 98 9999999999 9999998433 3444444 589999999999999999988666444
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-38 Score=295.94 Aligned_cols=294 Identities=21% Similarity=0.347 Sum_probs=259.4
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCC-----CceeEEEEecCCCEEEEEEeCCCCEEEE
Q 002493 1 MPLRLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVA 74 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 74 (915)
|+-.+.+.-+|.+|++.|+.++..+.++ .+++++.|..+.+|++.. |..++.+.+|+..|..+..+++|++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 4556677888999999999999999854 677888899999998754 6778999999999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCC
Q 002493 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (915)
++.|+.+++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|+..+.......-..+...|.|++|+|..
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999988733333323347899999999943
Q ss_pred -CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeE
Q 002493 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 155 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+|++++.|++|++||+++.+....+.+|.+.++.+.++|+|. +.++|+.||.+.+||++.++.+.++. +...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence 67999999999999999999998899999999999999999998 79999999999999999999988887 778999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC---------CccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG---------LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+++|+|+...|+.+. +..|+|||+.++..+..++.. .....+++|+++|+.|..|..|+.|++|
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 999999976666655 557999999998877665432 2345678999999999999999999997
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-36 Score=310.28 Aligned_cols=625 Identities=20% Similarity=0.262 Sum_probs=400.3
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002493 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+..+...|.++.|+|...+++++-.+|.|.|||++|...++.+.-..-+|++..|-+..+.+++|++|+.|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34555888999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
. .....|..|...|.+++.+| ...+++++|.|-+|++||-... .+.+++.+|...|.+++|+|...+ .+++++-|+
T Consensus 87 ~-ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFaS~sLDr 163 (794)
T KOG0276|consen 87 G-EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFASASLDR 163 (794)
T ss_pred c-eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ceeeeeccc
Confidence 8 77888999999999999999 7789999999999999998764 466788999999999999998665 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCC--CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002493 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
+|++|.+....+..++.+|...|.++.+-+.| ++|++|+.|..|++||.++..+++++.+|...|..++|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998855 7999999999999999999999999999999999999999999999
Q ss_pred EEecCCeEEEecCCCcc-----------eeEe---cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002493 288 IGYDEGTIMVKIGREEP-----------VASM---DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~-----------~~~~---~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
+|+.||++++|....-. ++++ ..++++..-.+....++++ |+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l-----------gr------------- 299 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL-----------GR------------- 299 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc-----------cC-------------
Confidence 99999999999544321 1111 1222222222222222221 11
Q ss_pred cCCceEEECCCCCEEEEEcCC--cEEEEEeecc-----------cccCccce----eEEEEecCCcEEEEecCCeEEEec
Q 002493 354 LYPQSLKHNPNGRFVVVCGDG--EYIIYTALAW-----------RNRSFGSA----LEFVWSSDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~~~--~~~i~~~~~~-----------~~~~~~~~----~~~~~s~~~~~l~~~~~~~v~v~~ 416 (915)
....+..+++|+.+-...+. .+.+..+... ..+..|.+ ..++-||+|++++++.+|.-.||.
T Consensus 300 -eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 300 -EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred -CCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 11244555555444322211 1111111111 11222322 467779999999999999988885
Q ss_pred -cC-----ccceeeeecCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEEccccEEEEcCCCCEEEEEeCCeEEEE
Q 002493 417 -KN-----FQEKRSVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 417 -~~-----~~~~~~~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
+. +..-..+ .|+++ ..-.|+..++ .|.++ .+.+....++.... ...--.|.+|.+.+.+.++++
T Consensus 379 ala~RnK~fG~~~eF--vw~~d----sne~avRes~~~vki~--knfke~ksi~~~~~-~e~i~gg~Llg~~ss~~~~fy 449 (794)
T KOG0276|consen 379 ALALRNKAFGSGLEF--VWAAD----SNEFAVRESNGNVKIF--KNFKEHKSIRPDMS-AEGIFGGPLLGVRSSDFLCFY 449 (794)
T ss_pred eeehhhcccccceeE--EEcCC----CCeEEEEecCCceEEE--ecceeccccccccc-eeeecCCceEEEEeCCeEEEE
Confidence 11 1111122 34555 5566776555 77777 56666665543222 222346778888999988887
Q ss_pred EecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecC--EEEEEccCC-eEEEEE---------CCEEeE---
Q 002493 490 KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGD--CFIYNNSSW-RLNYCV---------GGEVTT--- 554 (915)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d--~~i~~~~~~-~l~~~~---------~~~~~~--- 554 (915)
+... -..+..++...+...|.++ +....++.. -+.-+. ++....
T Consensus 450 dW~~---------------------~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeG 508 (794)
T KOG0276|consen 450 DWES---------------------GELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEG 508 (794)
T ss_pred Eccc---------------------ceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchh
Confidence 5321 1334455666677788874 222222222 011010 000000
Q ss_pred -------EEecccceE-------EEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccC-HHHHhhhcCCCCcchH
Q 002493 555 -------MFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGD-LERANEILPSIPKEHH 619 (915)
Q Consensus 555 -------~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~-~~~a~~~~~~i~~~~~ 619 (915)
+......+. ..=|....+|+...-.......++++.......... +++ +-.+++-+..+.-.-.
T Consensus 509 iedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~-~~~rvYL~Dke~nVi~y~l~ 587 (794)
T KOG0276|consen 509 IEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVA-NDNRVYLHDKELNVISYKIL 587 (794)
T ss_pred HHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeee-cCCEEEEeecccceEeEeee
Confidence 000000000 000111223332221222333344332111110000 000 0000000000000000
Q ss_pred HHHHHH--HHhCCChhhhhhcc----cCccce-eeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHH
Q 002493 620 NSVARF--LESRGMIEEAIEVA----TDPDYR-FELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMK 692 (915)
Q Consensus 620 ~~~~~~--~~~~~~~~~al~~~----~~~~~~-f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~ 692 (915)
-.+.+| +.-.+.++.|..+. ++...+ -.+.-.+|..++|++++..-+ +-=+.|++.|++++|
T Consensus 588 l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d------~rFelal~lgrl~iA----- 656 (794)
T KOG0276|consen 588 LEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPD------QRFELALKLGRLDIA----- 656 (794)
T ss_pred hHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChh------hhhhhhhhcCcHHHH-----
Confidence 011111 11123333333321 111111 122335666777777763221 222456777788877
Q ss_pred HcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002493 693 QAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (915)
Q Consensus 693 ~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (915)
..+.....+..++++|++.+...++..+|.+|+.+..|+..-.=++..+|.-+
T Consensus 657 --------~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 657 --------FDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred --------HHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 66666777777799999999999999999999988888887777777777654
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-37 Score=322.17 Aligned_cols=473 Identities=15% Similarity=0.173 Sum_probs=368.0
Q ss_pred hhhhhccc-CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002493 6 EIKRKLAQ-RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (915)
Q Consensus 6 ~~~~~l~~-h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~ 82 (915)
++.+.++. |++||.-|+|+|.+..|++|+.||.|+|||+..+.+...|.+|++.|.++.|+|+-. .|++|..|+.++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 56677777 999999999999999999999999999999999999999999999999999999754 488999999999
Q ss_pred EEECCCCce-eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCC-----CC
Q 002493 83 VYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD-----TN 156 (915)
Q Consensus 83 vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~ 156 (915)
+||+++... +..+..|.+.|+++.|++++..+++++.|..+.+||+.+. +...++.- ...+-++.+-+ + +.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~-~~l~~lp~-ye~~E~vv~l~-~~~~~~~~ 251 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY-KKLKTLPL-YESLESVVRLR-EELGGKGE 251 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh-hhhheech-hhheeeEEEec-hhcCCcce
Confidence 999996555 7778899999999999999999999999999999999654 33333332 23466666665 3 56
Q ss_pred EEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEE
Q 002493 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 235 (915)
++.+.+.+|.+++||..+++...+.... ...+..+...+... .++....|..+.++|.++.+....+-|....|..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~--~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS--QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC--ceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 9999999999999999988776544322 22355555555554 37777788999999999999999999999999999
Q ss_pred EEe-CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC--------------
Q 002493 236 CFH-PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG-------------- 300 (915)
Q Consensus 236 ~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~-------------- 300 (915)
+|- |+.+++++++..+.+|+|+..+..+. .+.+|...|.++....+|-+|++|+.|.++++|-.
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 875 57789999999999999998876665 78899999999997777889999999999999932
Q ss_pred -CCcc--eeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeee-eecCCcccCCceEEECCCCCEEEEEc-CCc
Q 002493 301 -REEP--VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCG-DGE 375 (915)
Q Consensus 301 -~~~~--~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~-~~~ 375 (915)
+... .+++...+--++.+...-.++.++..... -.+...+.+.. .....|+..|.+++++|+.+++|+|+ |..
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s--~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS--KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCc--ccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 1111 12223333334444444444444433220 01111111110 11245677899999999999999999 899
Q ss_pred EEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCc-------cceee--eecCcccceeecCcEE
Q 002493 376 YIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-------QEKRS--VRPTFSAERIYGGTLL 440 (915)
Q Consensus 376 ~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~-------~~~~~--~~~~~s~~~i~~g~~L 440 (915)
..||+....+ ..+...+.++.|++..+.+++.+ |.+|+||.++. .++.. ++..|-.+ |..|
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~ql 562 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQL 562 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEE
Confidence 9999877443 23445789999999999999988 89999998652 22221 22345444 7788
Q ss_pred EEeeCC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 441 AMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 441 a~~~~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
++++.+ -+++|++.+++++..++. .|+.+.-++.+.++++++.|+.+++|
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 877777 999999999999998874 89999999999999999999998877
No 20
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.5e-39 Score=316.02 Aligned_cols=282 Identities=23% Similarity=0.376 Sum_probs=258.5
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCe
Q 002493 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
+.+.||..+.|+++++.|+||+.+|.++||+..+...+..+.+|.+.+.++.|+|. +..+++|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 45679999999999999999999999999999999999999999999999999997 568999999999999999987
Q ss_pred eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002493 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.....+.+|...|..++|+| +|.+|++++.|.+-++||+.++.......+|..+|.+++|.++|. ++++|+.|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc--eeeccCccchhh
Confidence 77888999999999999999 999999999999999999999998888899999999999999998 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec-CCCEEEEEec
Q 002493 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~g~~ 291 (915)
|||+++|+++..+.+|..+|.+++|+|+|..|++||.|++++|||++..+.+.++..|..-|..+.|+| .|.+|++++.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 6899999999
Q ss_pred CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002493 292 EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 292 dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
|+++.+|....- + .++.+..|+..|-++.+++||++++++
T Consensus 409 D~t~kiWs~~~~------------------------------------~----~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 409 DNTVKIWSTRTW------------------------------------S----PLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred CcceeeecCCCc------------------------------------c----cchhhcCCccceEEEEeccCCceEEEe
Confidence 999999843321 1 123356677777888888888888888
Q ss_pred c-CCcEEEEE
Q 002493 372 G-DGEYIIYT 380 (915)
Q Consensus 372 ~-~~~~~i~~ 380 (915)
+ |..+.+|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 7 77777773
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-37 Score=307.07 Aligned_cols=322 Identities=22% Similarity=0.325 Sum_probs=278.7
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCC----ceeEEEE----------ecCCCEEEEEEeCCCCEEEEEeC
Q 002493 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQ----TMAKSFE----------VTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~----~~~~~~~----------~~~~~v~~~~~~~~~~~l~~g~~ 77 (915)
.|..+|.+++|+|-.. .+++|+.+-..++|++... .....++ ..+..|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999766 8999999999999998741 1101111 12357999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCE
Q 002493 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (915)
||.+++|+. +|..+.++..|.++|.++.|+..|.||++++.||++.+||..++ ...+.+.-|..+-..+.|- +...
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~--~~~~ 331 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ--SNDE 331 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe--cCce
Confidence 999999996 57888999999999999999999999999999999999999998 7888888898887889997 5789
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002493 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
|++++.|+.|+++.+....|+.++.+|.++|+++.|.|.+. +|+++++|++++||+.....+...+..|...|..+.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 99999999999999999999999999999999999999888 8999999999999999888899999999999999999
Q ss_pred eCCCC---------EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEe
Q 002493 238 HPELP---------IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 238 ~~~~~---------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~ 308 (915)
+|.|+ .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.||.|.+|..+...++.-
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 99764 789999999999999999999999999999999999999999999999999999985544433221
Q ss_pred cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002493 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.. ....+..++|+.+|..|.++. ++.+.+.+.
T Consensus 490 ~~-----------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 YQ-----------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ec-----------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 11 112345788998888887765 777666543
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-35 Score=310.29 Aligned_cols=664 Identities=19% Similarity=0.310 Sum_probs=404.1
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
.+...|..|.++|+.++|||+++++++|+.|-.|+||++.+.+++.++.+|-.-|+.+.|++.-.||+++|+|.+|+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------------------------eeEEEE
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------WMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~ 137 (915)
+.+++++..+.+|...|.|..|+|....++++|-|.+|++||+..- ..+..+
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999997531 234567
Q ss_pred eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
+.+|...|.-++|+| .-.++++|+.|+.|++|.++..+. +-+..+|...|.++-|+|..+ ++++.+.|++|++||
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEe
Confidence 889999999999999 788999999999999999866442 345678999999999999776 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC------CccEEEEEEecCCCEEEEE
Q 002493 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG------LERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~g 289 (915)
+...+.+++++......+.++-+|..+++++|. |+-+.+|.+..-++...+... ...+....+..... .++.
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d-~~v~ 356 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD-TAVA 356 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc-ceeE
Confidence 999999999988888999999999998887765 555667766533332222111 12222222222111 0110
Q ss_pred ecCCeEEEecCCCcceeEecCC-CcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002493 290 YDEGTIMVKIGREEPVASMDNS-GKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 290 ~~dg~v~i~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
.-.+.-..| .....+++++. +.++..+......+.+-..... .+|..-. ++.. .......+-...+ ++.
T Consensus 357 ~lr~~g~~~--~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~---~~~~~~~---~~~~-k~tG~~a~fvarN-rfa 426 (1202)
T KOG0292|consen 357 SLRRPGTLW--QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD---SDGVSDG---KDVK-KGTGEGALFVARN-RFA 426 (1202)
T ss_pred eccCCCccc--CCcceeeeccccCeEEEEeccCCCeEEEEEecCc---ccccCCc---hhhh-cCCCCceEEEEec-ceE
Confidence 000000000 01111222222 1222221111112221111100 0110000 0000 0000011111111 122
Q ss_pred EEEc-CCcEEEEEeeccccc---CccceeEEEEecCCcEEEEecCCeEEEeccCcccee-eeec------CcccceeecC
Q 002493 369 VVCG-DGEYIIYTALAWRNR---SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKR-SVRP------TFSAERIYGG 437 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~~---~~~~~~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~-~~~~------~~s~~~i~~g 437 (915)
+.-. +.++.+-+......+ ....+..+-+...|.+++. +...|.+||++.+... ++.. .+|.+ .
T Consensus 427 vl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~~s~vkyvvws~d----m 501 (1202)
T KOG0292|consen 427 VLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSND----M 501 (1202)
T ss_pred EEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEecCceeEEEEcCc----c
Confidence 2221 222222222111111 1123445555555555544 4456888886644322 2221 45666 7
Q ss_pred cEEEEeeCCeEEEEeccCCcEEEEEE--ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccce
Q 002493 438 TLLAMCSNDFICFYDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 438 ~~La~~~~~~v~~~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 515 (915)
.++|.-+..+|.+++. .-+++..+. .+|++-+|..+|-++-+..+.--|- +.+ ++.|..+..
T Consensus 502 ~~vAll~Kh~i~i~~k-kL~l~~sihEtiriksgawde~gVfiYtT~nHikYa-----------l~~----GD~GIikTL 565 (1202)
T KOG0292|consen 502 SRVALLSKHTITIADK-KLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYA-----------LEN----GDSGIIKTL 565 (1202)
T ss_pred chhhhcccceEEEEec-chhheecchheeEeeeceeccCceEEEEehhhhhhh-----------hcc----CCcceEEec
Confidence 7888877888888884 344555544 4788899998887765554432221 111 122222221
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEe-EEEecccceEEEEE-------------EeeC-----CEEEE
Q 002493 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVT-TMFHLDRPMYLLGY-------------LASQ-----SRVYL 576 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~-----~~l~~ 576 (915)
+. .+.+..-. +...||.+.+.. .+.+++...|.... +.+. .-+..
T Consensus 566 d~---------------~iyitkv~-gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaY 629 (1202)
T KOG0292|consen 566 DK---------------PIYITKVK-GNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAY 629 (1202)
T ss_pred cc---------------ceEEEEee-CCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHH
Confidence 11 11222222 333344322111 11222221111000 0000 00000
Q ss_pred EecCCce-EEEE-ecchHHHHHHHHHccCHHHHhhhcCCCCcchH-HHHHHHHHhCCChhhhhhcccCccceeeeecccC
Q 002493 577 IDKEFNV-MGYT-LLLSLIEYKTLVMRGDLERANEILPSIPKEHH-NSVARFLESRGMIEEAIEVATDPDYRFELAIQLG 653 (915)
Q Consensus 577 ~d~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~ 653 (915)
+.++|-. +... +...-.+|..+++.|+++.|.+....+..+.+ .++. +-+|..|
T Consensus 630 LqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLg-----------------------e~Al~qg 686 (1202)
T KOG0292|consen 630 LQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLG-----------------------EEALRQG 686 (1202)
T ss_pred HHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHH-----------------------HHHHHhc
Confidence 0111111 0000 11233455666666666666555444333322 1111 2234555
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHH
Q 002493 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAF 730 (915)
Q Consensus 654 ~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 730 (915)
+-+-|.-+.++. .-|..|.-.++-.|+.+.-.++...+ +|..+......-+|| +++..++....|..-+|.
T Consensus 687 n~~IaEm~yQ~~---knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~d---v~ervkIl~n~g~~~lay 760 (1202)
T KOG0292|consen 687 NHQIAEMCYQRT---KNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGD---VKERVKILENGGQLPLAY 760 (1202)
T ss_pred chHHHHHHHHHh---hhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhcc---HHHHHHHHHhcCcccHHH
Confidence 655555554433 45777888888888888877777666 466666666666888 888899999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHCC
Q 002493 731 LCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~ 750 (915)
..+.-.|.-++|.++..+.+
T Consensus 761 lta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 761 LTAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHhhcCcHHHHHHHHHhhc
Confidence 99999999899998887765
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8e-37 Score=285.38 Aligned_cols=286 Identities=22% Similarity=0.345 Sum_probs=256.3
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~ 129 (915)
.+++++|.+.|.++.|++|+++|++++.||.+.|||.-|..+++.++.....|..++|+|.|++++.|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--e---eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEe-CCCcCEEE
Q 002493 130 KG--W---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLI 203 (915)
Q Consensus 130 ~~--~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~ 203 (915)
+. . ...+.+.+|.+++.|+.|.+ .+.|++++.|.+..+||+.+++.+..+.+|.+.|.+++++| +++ .++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n--tFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN--TFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC--eEE
Confidence 43 1 45667899999999999985 67899999999999999999999999999999999999999 444 899
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC--CccEEEEEEec
Q 002493 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMK 281 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~ 281 (915)
+|+.|+..++||++.+.++++|.+|...|.+++|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999998888777643 46799999999
Q ss_pred CCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEE
Q 002493 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 361 (915)
.|++|.+|+.|..+.+|..- .++++ -.+..|+..|+++..
T Consensus 284 SGRlLfagy~d~~c~vWDtl------------------------------------k~e~v----g~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTL------------------------------------KGERV----GVLAGHENRVSCLGV 323 (343)
T ss_pred cccEEEeeecCCceeEeecc------------------------------------ccceE----EEeeccCCeeEEEEE
Confidence 99999999999999997311 11111 113567778899999
Q ss_pred CCCCCEEEEEc-CCcEEEE
Q 002493 362 NPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 362 s~~g~~lav~~-~~~~~i~ 379 (915)
+|||.-|++++ |..+.||
T Consensus 324 s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCCCcEEEecchhHheeec
Confidence 99998888888 8888877
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8e-37 Score=303.32 Aligned_cols=277 Identities=24% Similarity=0.361 Sum_probs=259.2
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|++++|+.+|..||+|..+|.++||+ .+|.++.++..|.+||.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 678889999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 002493 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
.-|..+-..+.|-.+. .+++++.||.|+++.+... .+..++.+|.+.|.++.|+| .+.+|++++.|+++++|+....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCC
Confidence 9999887888997654 6899999999999999876 67788888999999999999 8999999999999999999888
Q ss_pred CCceEEecCCCCeeEEEEEeCCC-------cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002493 176 DPNFTLDAHQKGVNCVDYFTGGD-------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
.....+..|...|..+.|+|.+. +..+++++.|++|++||...+.++.++..|..+|.+++|+|+|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88889999999999999999763 33789999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
.||.|.+|+.+++++.+++... +.|..++|+.+|..|.++..||.+.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999998876 66999999999999999999998876
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-37 Score=298.09 Aligned_cols=294 Identities=27% Similarity=0.451 Sum_probs=277.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
++.+...+.+|..+|+.+-|+|+...+++++.|++|++||+.++++...+++|...|..++|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 84 YNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ -+..++.+|...|..+..+. |+.++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 99986 5677888899999999999999999999999999999999999 78899999999999999998 999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-------------CcCEEEEEeCCCeEEEEECCCCcEEEEecCCc
Q 002493 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-------------DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (915)
.|.+|++|-+.++++...++.|+.+|-|++|.|.. ..+++.+++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999998888999999999999998742 12489999999999999999999999999999
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
..|..++|+|.|++|+++..|+++++||+++++++.++..|..-++++.|..+..++++|+-|..+.+|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-38 Score=304.89 Aligned_cols=281 Identities=27% Similarity=0.475 Sum_probs=252.1
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
.+|..+.|.|+|+.|++|++.|.+.+|+..+-.....+..|+.+|+++.|++++.++++|+.+|.|++|+.+ ...++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 478999999999999999999999999975544444566899999999999999999999999999999976 4556666
Q ss_pred ecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 96 EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
.+|. ..|++++|+|+...++++|+||+|+|||.... .....+.+|.-.|.++.|+| ...++++|+.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence 6555 89999999999999999999999999999877 55567799999999999999 888999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC-CCEEEEEEcCCcE
Q 002493 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-LPIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~v 253 (915)
+.++.++..|+..|..+.|+++++ +|++++.|..++++|+++.+.++++++|...++++.|+|- ..+|.+|+.||.|
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999985 9999999999999999999999999999999999999994 4588899999999
Q ss_pred EEEeCCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 254 RIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 254 ~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
..|.+...+++..+ ..|...||+++|+|-|..|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998855544443 4577899999999999999999999999999643
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-35 Score=272.69 Aligned_cols=297 Identities=22% Similarity=0.317 Sum_probs=245.0
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC-----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002493 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN-----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vwd~~-----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
...++++|++.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.+|+..|..+..+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 44568899999999999887 5678889999999999875 46678899999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC--CCCeeEEEEEeCCCcC
Q 002493 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKP 200 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~ 200 (915)
+++||+.++ +..+.|.+|...|++++|+| ++..+++|+.|++|++|+..+. +..++..+ ..-|.|++|+|+...+
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999 88899999999999999999 8999999999999999998664 34444333 6789999999998888
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEe
Q 002493 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~ 280 (915)
+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+.++... ..|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-CeEeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998877644 889999999
Q ss_pred cCCCEEEEEecCCeEEEecCCCcc-eeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceE
Q 002493 281 KSSRRIVIGYDEGTIMVKIGREEP-VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL 359 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 359 (915)
|+...|+.+...+ |+||...... +..+..++.-. .. ......-..+
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~-------------------s~-------------~~~~~~clsl 289 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGP-------------------SS-------------KAGDPICLSL 289 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhhhhhcccccccc-------------------cc-------------ccCCcEEEEE
Confidence 9988888887766 6665322221 11111110000 00 0111122467
Q ss_pred EECCCCCEEEEEc-CCcEEEEEee
Q 002493 360 KHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 360 ~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
+||+||+.|..+- ++.+.+|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 8999998887775 8888888653
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-36 Score=286.54 Aligned_cols=290 Identities=19% Similarity=0.409 Sum_probs=265.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
..++.+.+.+|.+.|+|+++.|...|+++|+.|++|+|||+.+|++..++.+|-..|+.+++|+...++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
||+...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++. .....+.+|..+|.++.+.| -+..+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQP-TDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeec-CCCceEEecC
Confidence 999999999999999999999999999999999999999999999997 77889999999999999999 5668999999
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002493 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
|++|++||++.++...++..|...|.+++.+|... .+++++.| .|+-|++..|..+..+.+|...|.+++...|+ +
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~--~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN--LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchh--hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 99999999999999999999999999999999876 56666655 79999999999999999999999999999886 7
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeeec--------CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 244 IITGSEDGTVRIWHATTYRLENTLNY--------GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
+++|+.+|.+.+||.++|-..+.... ....|.+.+|...|.+|++|..|.+|.+|.
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 88999999999999988765443321 124689999999999999999999999974
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.8e-34 Score=276.73 Aligned_cols=287 Identities=19% Similarity=0.271 Sum_probs=253.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
...|..|++.|.+++.+|+.+++++|+.|..-.||+..+|.....+.+|+..|+++.|+.+|.+||+|+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
++.....+...-+.|.-+.|+|.+..|+.|+.||.+.+|.+.++ ...+.+.+|+.++++-.|.| ++..++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 99988888766778999999999999999999999999999987 67888999999999999999 89999999999999
Q ss_pred EEEECCCCCCceEEecC---------------------------------------------------CCCeeEEEEEeC
Q 002493 168 KIWNLGSPDPNFTLDAH---------------------------------------------------QKGVNCVDYFTG 196 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~---------------------------------------------------~~~v~~~~~~~~ 196 (915)
++|++.++.+...+... ...+.|+.+.|.
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999988776655410 011112222221
Q ss_pred -CCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEE
Q 002493 197 -GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275 (915)
Q Consensus 197 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 275 (915)
..-++.++|+-||+|.|||+...+...... |...|+.+.|-+ ..+|++++.+|.|+.||.++|++..++.+|...|.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 123467889999999999998766555554 888999999999 68999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEe
Q 002493 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+++++|+.++++++++|++.+++
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999998874
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=269.69 Aligned_cols=286 Identities=22% Similarity=0.377 Sum_probs=255.0
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECC-CCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
+...+.+|.+.|..+.|+|+|++||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345678999999999999999999999999999999943 3455567889999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECC
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (915)
.++|+.++.++.|.+.+..+.-+.-|. ++.+++.||++++||+++. ...+++. ..-.++++.|.. .+..+.+|+-|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggId 195 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGID 195 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeecccc
Confidence 999999999999999999998665565 4568899999999999976 4555543 345689999997 88899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----CcEEEEecCCcc----CeEEEE
Q 002493 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTH----NVSAVC 236 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~i~~i~ 236 (915)
+.|++||++.+....++.+|..+|+.+..++.|. ++.+-+.|.++++||++. .+++..+.+|.. .....+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCC--ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999999999999999999999999998 799999999999999975 345777777544 356789
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
|+|++..+.+|+.|..+++||....+.+..+.+|.+.|.++.|+|...+|.+++.|.++.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999998888899999999999999999999999999999999876
No 31
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=260.19 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=239.5
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--eEEEecCCCCEEEE
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l 105 (915)
-+|+++++|.+|++|...+|.+..++...++.|+.+...|+++.||+++. ..|++||+++++. +.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999999999999999988999999999999999999875 5799999998764 78899999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE-ecC
Q 002493 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAH 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 184 (915)
.|..+|+.+++|++||+++|||++.. .+.+.+. |..+|.++..+| +...|++|..+|.|++||+........+ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999985 5555554 779999999999 8889999999999999999887655444 345
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002493 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
...|.++...|+|. +++.+...|..++|++-++ .++..++.|.+.+....+||++++|+++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 57889999999998 7999999999999998653 356778889999999999999999999999999999999
Q ss_pred CCc-ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 259 TTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 259 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
.+. +....+..|...+|..+||.||.+|++|+.|+..++|...
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 887 6777888888899999999999999999999999998544
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.7e-35 Score=309.77 Aligned_cols=242 Identities=23% Similarity=0.481 Sum_probs=228.8
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-------------------------------ceeEEEEecCCCEEEE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------------------------------TMAKSFEVTELPVRSA 63 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~ 63 (915)
...++|..|++|+..||.|..|..|++|.+... ...+++-+|.+||..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 456999999999999999999999999987631 1335577899999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc
Q 002493 64 KFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143 (915)
Q Consensus 64 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 143 (915)
.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+.+.|+|.|-|++++|.|++-++|..+.. .+.+++.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 78899999999
Q ss_pred cEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE
Q 002493 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
.|.|+.|+| +.+++++||.|.+|++||+.+|..++.+.+|.++|.+++|+|.|. +|++|+.||.|.+||+.+++.+.
T Consensus 537 DV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 537 DVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcchh
Confidence 999999999 999999999999999999999999999999999999999999888 99999999999999999999999
Q ss_pred EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 224 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+.+|.+.|.++.|+.+|..|++|+.|++|++||+..
T Consensus 614 ~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999764
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-33 Score=294.93 Aligned_cols=287 Identities=32% Similarity=0.558 Sum_probs=264.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.+++.+|.++|.+++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45778999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+++.+..+..|...|.++.|+++++++++++.+|.|.+||+.++ .....+..|...+.++.|+| ++.++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888889999999999999999888888888999999999976 56666778888999999999 67888888889999
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002493 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 247 (915)
++||+++++....+..+...+.++.|+|++. .+++++.++.|++||+++++.+..+..|...+.+++|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999998888888888888999999999886 68888889999999999999988887888899999999998888888
Q ss_pred EcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+.+|.|++|++.+++....+..+...+.+++|+|+++.+++++.||.+.+|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999999888888888899999999999999999999999987
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=260.83 Aligned_cols=287 Identities=23% Similarity=0.368 Sum_probs=243.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCC-CCeEEEEEcCCcEEEEECCCC---ceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQ---TMAKSF-EVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~-~~~la~~~~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~d 78 (915)
++...+++.+|.++|..++|||- |..||+++.|..|+||+...+ .+...+ .+|...|++++|+|.|++|+++|.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 35566789999999999999998 889999999999999998743 233333 2589999999999999999999999
Q ss_pred CeEEEEECCCC--ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEccCC
Q 002493 79 MFIRVYNYNTM--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 79 g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (915)
.++.||.-..+ +++..+.+|...|.|++|+++|.+|++|+.|..|-||.+. ....+..++..|...|..+.|+| .
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-T 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-C
Confidence 99999976543 6688899999999999999999999999999999999988 44577889999999999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC
Q 002493 155 TNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 231 (915)
..+|++++.|.+|++|+-.. -....++.+|...|.+++|.+.|. .|+++++|++++||...+.-. ..|...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~~~~~----~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLYTDLS----GMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeeccCcc----hhcccc
Confidence 89999999999999998762 246788899999999999999987 599999999999998663211 236678
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEeCCCc------cee-eeeecCCccEEEEEEecC-CCEEEEEecCCeEEEec
Q 002493 232 VSAVCFHPELPIIITGSEDGTVRIWHATTY------RLE-NTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 232 i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~-~~~~~~~~~v~~i~~~~~-~~~l~~g~~dg~v~i~~ 299 (915)
+..+.|. + ..|++++.|+.|++|.-... +++ ..-..|...|.++.|.|. .++|++|++||.+.+|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999999 4 48999999999999975532 111 233456678999999995 78999999999999984
No 35
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=2e-33 Score=289.18 Aligned_cols=687 Identities=14% Similarity=0.200 Sum_probs=414.0
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vw 84 (915)
..+..+|++|.+.|.|++|+.||+.+|+|+.|..|.||+-+-...+ .+ .|...|.|+.|+|-...|++++-+ ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 3466789999999999999999999999999999999995433222 23 389999999999999999998753 35688
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE--EeecCCccEEEEEEccCC----CCEE
Q 002493 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKD----TNTF 158 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~----~~~l 158 (915)
+....... .. .....+.+.+|..||++++.|-.+|+|.+-+-... .... .-.+.+.+|.+++|+|.. ...+
T Consensus 120 S~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 120 SPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred ChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 76542221 11 23557889999999999999999999999875443 2222 233567899999999943 3578
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002493 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
++.....++.++.+.+ +.+..-+.-.-...|+.+.++|. |++.|+.|+.+.+|. +.|-.+-++......|++++..
T Consensus 197 aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEeccceeEEEEecc-eeecccccCCCCchhheeccCCc--EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 9999999999999854 33333233344557999999988 999999999999997 5588888887788999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecC---CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEE
Q 002493 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~ 315 (915)
|+++.++.|+.||+|..|++............ ....+.+-. +.|.++ ..++|....-...+++. ..++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDViv----QhLi~~---qkvrIkC~DLVkKiaiY-rnrLA 344 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIV----QHLITE---QKVRIKCKDLVKKIAIY-RNRLA 344 (1081)
T ss_pred cCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHH----HHHhhc---ceeeeeHHHHHHHHHhh-hhhhe
Confidence 99999999999999999986532211100000 000000000 001111 01111111100001111 11222
Q ss_pred EEeeCceEEEEeeecccceeccCCceeeee--eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec-----ccccC
Q 002493 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLA--VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA-----WRNRS 388 (915)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~-----~~~~~ 388 (915)
......+.++.+. +++..++. +++--.....-+-+. -.++++++|.+.++..|+... |....
T Consensus 345 VQLpeki~iYel~---------se~~~~mhY~v~ekI~kkf~cSLlV--Vc~~HiVlCqekrLqClDF~Gvk~ReW~M~S 413 (1081)
T KOG1538|consen 345 VQLPEKILIYELY---------SEDLSDMHYRVKEKIIKKFECSLLV--VCANHIVLCQEKRLQCLDFSGVKEREWQMES 413 (1081)
T ss_pred ecccceEEEEecc---------ccccccchhHHHHHHHhhccceEEE--EEcCeEEEEcccceeeecccchhhhhhhHHH
Confidence 2233334444432 22211111 111000000111111 235678888888888887654 33333
Q ss_pred ccceeEEEEecCCc--EEEEecCC-eEEEeccCcc-------ceeeeec-CcccceeecCcEEEEeeCC-eEEEEeccCC
Q 002493 389 FGSALEFVWSSDGE--YAVRESSS-KIKIFSKNFQ-------EKRSVRP-TFSAERIYGGTLLAMCSND-FICFYDWAEC 456 (915)
Q Consensus 389 ~~~~~~~~~s~~~~--~l~~~~~~-~v~v~~~~~~-------~~~~~~~-~~s~~~i~~g~~La~~~~~-~v~~~d~~~~ 456 (915)
+.....+.-.|-|+ +++...+| ..+|| ++.. ....++. .++.. .+.||+..++ +..+||+.|+
T Consensus 414 ~iRYikV~GGP~gREgL~vGlknGqV~kiF-~dN~~PiLl~~~~tAvrClDINA~----R~kLAvVDD~~~c~v~DI~t~ 488 (1081)
T KOG1538|consen 414 LIRYIKVIGGPPGREGLLVGLKNGQVLKIF-VDNLFPILLLKQATAVRCLDINAS----RKKLAVVDDNDTCLVYDIDTK 488 (1081)
T ss_pred HHHhhhhhcCCCCcceeEEEecCCcEEEEE-ecCCchhheecccceeEEeeccCC----cceEEEEccCCeEEEEEccCC
Confidence 33333444445553 34444454 45666 3321 1111222 45555 7789988877 9999999999
Q ss_pred cEEEEEEccccEEEEcC-CCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEE
Q 002493 457 RLIRRIDVTVKNLYWAD-SGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCF 535 (915)
Q Consensus 457 ~~i~~~~~~i~~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~~ 535 (915)
+.+.+ +..+.+|.||. ...++++.+..++.+ +.. .|+.-.+ +.. + |
T Consensus 489 elL~Q-Epg~nSV~wNT~~E~MlcfT~~g~L~V-R~~---------------------~~P~h~q---k~~-G------~ 535 (1081)
T KOG1538|consen 489 ELLFQ-EPGANSVAWNTQCEDMLCFTGGGYLNV-RAS---------------------TFPVHRQ---KLQ-G------F 535 (1081)
T ss_pred ceEee-cCCCceEEeeccccceEEEecCCceEE-Eec---------------------cCCcchh---cce-E------E
Confidence 98775 45789999995 445667666654444 211 1222100 000 0 2
Q ss_pred EEEccCCeEEEEECCEEeEEEecccce--EEEEEE-----eeCCEEEEEecCCceEEEEecchHHH--HHHHHHccCHHH
Q 002493 536 IYNNSSWRLNYCVGGEVTTMFHLDRPM--YLLGYL-----ASQSRVYLIDKEFNVMGYTLLLSLIE--YKTLVMRGDLER 606 (915)
Q Consensus 536 i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~l~~~d~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 606 (915)
+.+-..+++ ||.-+. .+..++-|. .+..|+ +..-++.|. -+..+..+ .+.+++-.+++.
T Consensus 536 VvG~~gsk~-FCL~~~--~i~~~evp~~~~m~q~Ieag~f~ea~~iacl---------gVv~~DW~~LA~~ALeAL~f~~ 603 (1081)
T KOG1538|consen 536 VVGYNGSKI-FCLHVF--SISAVEVPQSAPMYQYIERGLFKEAYQIACL---------GVTDTDWRELAMEALEALDFET 603 (1081)
T ss_pred EEEecCceE-EEEEee--eeecccccccccchhhhhccchhhhhccccc---------ceecchHHHHHHHHHhhhhhHH
Confidence 222221222 221000 011111110 011111 111111111 00000010 012222222222
Q ss_pred HhhhcCCC---------------------C-----------cchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCC
Q 002493 607 ANEILPSI---------------------P-----------KEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGR 654 (915)
Q Consensus 607 a~~~~~~i---------------------~-----------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~ 654 (915)
|...+..+ | .+-+..+++.+.+.|+-.+|+ ||+-++.+
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAl----------EmyTDlRM 673 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRAL----------EMYTDLRM 673 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHH----------HHHHHHHH
Confidence 21111111 0 111245566677777777777 55567777
Q ss_pred HHHHHHHHHHcCChh---HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH---------------HHHHH
Q 002493 655 LEVAQEIATEVQSES---KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE---------------GISKL 716 (915)
Q Consensus 655 ~~~A~~~a~~~~~~~---~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~---------------~~~~l 716 (915)
|+.|.++......+. +-+.-|+.|-...+...|.+++..+|+..+++.+....|-.+ .++.+
T Consensus 674 FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 674 FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 999999998776644 556778888889999999999999999888887765554433 34556
Q ss_pred HHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhc
Q 002493 717 ASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (915)
Q Consensus 717 ~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~ 781 (915)
+.........-+|..++..+||...-+++.++.++|++|+.+|..| |+.+..+.-.+.++|.+.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhh
Confidence 6666777788899999999999999999999999999999999987 666666655555555433
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=287.82 Aligned_cols=396 Identities=16% Similarity=0.256 Sum_probs=321.1
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
.+.-++.||..+|+++.|+..|..||+|+.|+.|.+||+-...-...+.+|+..|+.+-|....+++++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 34557889999999999999999999999999999999988888889999999999999999899999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------------------------------
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------------------- 131 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------------------- 131 (915)
+.+..+..+.-.|.+.|+.+++++ +.+++++.|+.+++|++...
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred cccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 999999999999999999999998 68999999999999998110
Q ss_pred ------------------------------------------------------------------------------ee
Q 002493 132 ------------------------------------------------------------------------------WM 133 (915)
Q Consensus 132 ------------------------------------------------------------------------------~~ 133 (915)
..
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence 00
Q ss_pred -----------------------------EEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC
Q 002493 134 -----------------------------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 134 -----------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 184 (915)
-.-.+.+|...|.+++++. .+.++..+..++|++|+..+.++++++...
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~ 413 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG 413 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc
Confidence 0011346777888999985 444444555789999999999999998754
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----
Q 002493 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT---- 260 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~---- 260 (915)
.+.+..|.|.+. ++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||.|.+|++||..-
T Consensus 414 --y~l~~~Fvpgd~--~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 414 --YILASKFVPGDR--YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred --cEEEEEecCCCc--eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 788999999877 899999999999999999999999999999999999999999999999999999999531
Q ss_pred -ccee--------eeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecc
Q 002493 261 -YRLE--------NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (915)
Q Consensus 261 -~~~~--------~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 331 (915)
+... .++.. ...|.|+++||||++||++--|.++.++.... -+.+
T Consensus 490 ~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---------lKFf---------------- 543 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---------LKFF---------------- 543 (888)
T ss_pred CcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecc---------eeee----------------
Confidence 1111 12222 36789999999999999999999998841110 0000
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc-----cCccceeEEEEecCCcEEE
Q 002493 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN-----RSFGSALEFVWSSDGEYAV 405 (915)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~s~~~~~l~ 405 (915)
-.+-.|..+|.++..|||++.+++|+ |.++.+|-..-+.- .+..++.++.|-|....+.
T Consensus 544 ---------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 544 ---------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred ---------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence 01346677899999999999999999 99999996655431 2336789999999887666
Q ss_pred Eec-CCeEEEeccC-cc------cee-eeec-CcccceeecCcEEEEeeCC-eEEEEecc
Q 002493 406 RES-SSKIKIFSKN-FQ------EKR-SVRP-TFSAERIYGGTLLAMCSND-FICFYDWA 454 (915)
Q Consensus 406 ~~~-~~~v~v~~~~-~~------~~~-~~~~-~~s~~~i~~g~~La~~~~~-~v~~~d~~ 454 (915)
+.+ |+.|+-||-. |. ++. .++. +.+|+ |.++++++.| .|++|.-.
T Consensus 609 t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~----G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN----GSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EecCcceEEeechhhhhhheeeccchheeeeeEEcCC----CCeEEeccCCceeEeeecc
Confidence 655 8999999832 22 222 2222 67777 9999999998 99999843
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=286.57 Aligned_cols=282 Identities=23% Similarity=0.380 Sum_probs=246.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|.++|+++.|++++.++++|+.+|.|++|+..-+ .+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3458999999999999999999999999998665555667799999999999999999999999999999998765 334
Q ss_pred EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.....|...|.+++|+| ..+.|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++|+.|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEccCCceeEeec
Confidence 44444558999999999 888999999999999999999999999999999999999999876 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC-CCEEEEEecCCe
Q 002493 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGT 294 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~g~~dg~ 294 (915)
.+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.+++.|...|+++.|+|- ..++++|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 467778999999
Q ss_pred EEEecCC-CcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-
Q 002493 295 IMVKIGR-EEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG- 372 (915)
Q Consensus 295 v~i~~~~-~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~- 372 (915)
+..|... +.|+..+ ...++..|.+++|+|=|.+|+.++
T Consensus 331 vvh~~v~~~~p~~~i----------------------------------------~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEI----------------------------------------PPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred eEEEeccccccccCC----------------------------------------CcccccceeeeeccccceeEeecCC
Confidence 9997432 2221111 134566778999999999999988
Q ss_pred CCcEEEEEe
Q 002493 373 DGEYIIYTA 381 (915)
Q Consensus 373 ~~~~~i~~~ 381 (915)
|..+.+|..
T Consensus 371 d~t~rfw~r 379 (464)
T KOG0284|consen 371 DRTVRFWTR 379 (464)
T ss_pred Ccceeeecc
Confidence 677777743
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.3e-33 Score=252.85 Aligned_cols=266 Identities=19% Similarity=0.345 Sum_probs=233.8
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~ 86 (915)
++++...+.|..+...|+++.||+++ .-.|++||++++. .+.++.+|...|+++.|..+|+++++|++||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 44555566899999999999999998 4679999999875 57889999999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc
Q 002493 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....-...........|.++...| ++.+++.+...|.
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGN 190 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCcc
Confidence 9866666665 6799999999999999999999999999999987223333344456799999999 9999999999999
Q ss_pred EEEEECCCC------CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC
Q 002493 167 IKIWNLGSP------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 167 i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~ 239 (915)
.++|++-+. .++.+++.|.+.+..+.+||+++ +|++++.|.+++||+..+. +....+.+|...++..+||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCc--EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence 999998654 35567789999999999999988 9999999999999999887 66677889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
||.+|++|+.|+.+++|++..++.+....+|.....|++.
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999999999988777666654
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.4e-33 Score=305.80 Aligned_cols=286 Identities=26% Similarity=0.464 Sum_probs=260.5
Q ss_pred hcccC-CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002493 10 KLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 10 ~l~~h-~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~ 86 (915)
.+.+| ...|.++.|||+|.++++++.++.+++|+..+.+ ..+.+.+|...|++++|+|+++++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34344 7889999999999999999999999999997777 77778889999999999999999999999999999999
Q ss_pred -CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCC
Q 002493 87 -NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 87 -~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
..+..++++.+|...|++++|+|+++++++|+.|++|++||++++ .+...+.+|...|.+++|++ +++.|++++.|+
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDG 310 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCCCc
Confidence 556889999999999999999999999999999999999999997 89999999999999999999 999999999999
Q ss_pred cEEEEECCCCC--CceEEecCCCC--eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC---eEEEEEe
Q 002493 166 TIKIWNLGSPD--PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN---VSAVCFH 238 (915)
Q Consensus 166 ~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~i~~~ 238 (915)
.|++||+.++. +...+..+... +++++|+|++. ++++++.|+.+++||++.+.++..+.+|... +.+...+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 99999999988 45566555554 99999999988 8999999999999999999999999888774 4445567
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-CccEEEEEEecCCCEEEEEe--cCCeEEEec
Q 002493 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGY--DEGTIMVKI 299 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~g~--~dg~v~i~~ 299 (915)
+.+.++++|+.|+.|++||+.++..+..+..| ...+..+.++|..+++++++ .|+.+.+|.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 89999999999999999999999999999999 88999999999999999988 788888874
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-33 Score=298.06 Aligned_cols=244 Identities=25% Similarity=0.486 Sum_probs=228.8
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeEEEecCCC
Q 002493 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-------------------------------DKVKVFEAHTD 100 (915)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-------------------------------~~~~~~~~~~~ 100 (915)
++......++|..|+++++.||.|..|..|++|.+... ....++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34445567999999999999999999999999988631 12345678999
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002493 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (915)
+|....|+|+.++|++||.|+++++|.+.+. .+...+.+|..+|+.+.|+| .+-+|++++.|++-++|......+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999997 78888899999999999999 899999999999999999999999999
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+.+|...|.|+.|+|+.. |+++|+.|.+|++||..+|..++.|.+|.++|++++|||+|++|++|+.||.|++||+.+
T Consensus 531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 261 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
++++..+..|.+.|.++.|+.+|..||+|+.|..|++|.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999999984
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=249.38 Aligned_cols=283 Identities=18% Similarity=0.261 Sum_probs=253.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.+.+..|.++|.++.|+-||+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
||+..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. ..+.+++......|+++..+ +..++.|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999864 36677888788889999985 578999999999
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeE--EEEEeCCCCEE
Q 002493 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS--AVCFHPELPII 244 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~--~i~~~~~~~~l 244 (915)
++.||++.++...-. ...+|+|++|+++++ ..++++-|+++++.|-.+|+.+...++|...-. ..+++.....+
T Consensus 167 vRtydiR~G~l~sDy--~g~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDY--FGHPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhh--cCCcceeEEecCCCC--EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999999988654433 457899999999998 799999999999999999999999999877544 34566666799
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002493 245 ITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
++|++||.|.+||+.....+..+..+... +.+++++|.-..+.+++..+.+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99999999999999999999999888776 899999999888888776655443
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=272.39 Aligned_cols=291 Identities=17% Similarity=0.250 Sum_probs=249.0
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 81 (915)
.+-.+.+..|++.|.-+.||++|++||+++.|.+..||.+... ++.+++.+|..+|..+.||||.++|++++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 4556788999999999999999999999999999999987554 4577888999999999999999999999999999
Q ss_pred EEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 82 RVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
.+||..+|.....+. +|...+.+++|.|||..+++|+.|++|..||++.. ....--......|.+++.++ |+..+++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~-Dgk~vl~ 371 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY-DGKYVLL 371 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC-CCcEEEE
Confidence 999999999988775 45678999999999999999999999999999875 22222122335699999999 8999999
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC--eEEEEEe
Q 002493 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVCFH 238 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~i~~~ 238 (915)
.+.|..|++++..+...... .....+|++.+++.++. ++++.-.+..+.+||+.....++.+.||... +-.-||-
T Consensus 372 v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k--~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGK--LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred Eecccceeeechhhhhhhcc-ccccCceeEEEEcCCCc--EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 99999999999876544333 34567899999998877 8899999999999999988888888888765 3344555
Q ss_pred C-CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC-CEEEEEecCCeEEEecC
Q 002493 239 P-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 239 ~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~g~~dg~v~i~~~ 300 (915)
. +..++++||+|+.|+||+..+++++.++.+|...|.+++|+|.. .++|++++||+|+||-.
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 4 34799999999999999999999999999999999999999975 57889999999999943
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-32 Score=262.59 Aligned_cols=250 Identities=24% Similarity=0.403 Sum_probs=232.2
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++.+.+.+|.+.|+|+++.|-+.+|++|+.|++|.|||+.+|+...++.+|...|+.+++|+-.+|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.+ +.++.+.+|-+.|.|++.+| .-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|... .+++|+.
T Consensus 222 Le~n-kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--qvit~S~ 297 (460)
T KOG0285|consen 222 LEYN-KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--QVITGSH 297 (460)
T ss_pred chhh-hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--ceEEecC
Confidence 9988 77788889999999999999 788999999999999999999999999999999999999987655 5999999
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
|++|++||++.|+...++..|...+.+++.+|....+++++.| .|+.|++..|..+..+..|..-+.+++...|+ .++
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLV 375 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEE
Confidence 9999999999999999999999999999999999999999988 69999999999999999999999999998875 678
Q ss_pred EEecCCeEEEecCCCc
Q 002493 288 IGYDEGTIMVKIGREE 303 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~ 303 (915)
+|+++|.+.+|..+..
T Consensus 376 ~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSG 391 (460)
T ss_pred EcCCceEEEEEecCcC
Confidence 9999999999854433
No 44
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.8e-30 Score=259.87 Aligned_cols=433 Identities=19% Similarity=0.304 Sum_probs=315.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCC--------cEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEEe
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSG--------TVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGA 76 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~ 76 (915)
.++.+.+|++.|.||+.||+.-.+++|...| .|+|||..+-..+..+......|.|++|++ .|..+..-.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 5677889999999999999998899876655 499999888888888887888999999998 355555543
Q ss_pred --CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE--EEeecC-CccEEEEEEc
Q 002493 77 --DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGH-SHYVMQVTFN 151 (915)
Q Consensus 77 --~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~v~~~~~~ 151 (915)
.+..+.|||...+......+..+..+....|+|.++.+++....|.+.+|+++++.... -+++++ ...|.|++|.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 35689999999888888888778889999999998888877788999999999873222 233333 4679999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE--------
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-------- 223 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------- 223 (915)
+ + .-+++|..+|.|.||+..+.+..+....|.++|.+++...+|. |++|+.|+.|..||-. -+.++
T Consensus 256 e-n-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~-y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 E-N-GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDN-YRKLRETELPEQF 329 (626)
T ss_pred C-C-CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc---EeecCccceEEecccc-ccccccccCchhc
Confidence 8 4 4588999999999999988777777779999999999998886 8889999999999832 11111
Q ss_pred ---------------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002493 224 ---------------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 224 ---------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
...+|....+.++.+|+...+++++.|+.+++|+ ..+++.+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 1235666777888888888888888888888888 34555544433
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecC
Q 002493 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
.++.++.|+|.| .+|+|+..|...+- +.....+ +.+ .
T Consensus 408 -d~~~~~~fhpsg-~va~Gt~~G~w~V~----------d~e~~~l--------------------------v~~-----~ 444 (626)
T KOG2106|consen 408 -DPAECADFHPSG-VVAVGTATGRWFVL----------DTETQDL--------------------------VTI-----H 444 (626)
T ss_pred -CceeEeeccCcc-eEEEeeccceEEEE----------eccccee--------------------------EEE-----E
Confidence 567788888888 78888888776662 1111111 000 1
Q ss_pred CcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-------CccceeEEEEecCCcEEEEec-CCeEEEeccCc--
Q 002493 351 TCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-- 419 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~-- 419 (915)
.+..+++.++++|+|.+||+++ |+.+++|.+.....+ ....++.+.||+|++|+.+.+ |-.|-.|....
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 1133567999999999999999 999999987654321 225789999999999999998 67788885221
Q ss_pred --cceeeeec-------Ccccceee------------cCcEEEEeeCC-eEEEEeccCCcEEE---EE---EccccEEEE
Q 002493 420 --QEKRSVRP-------TFSAERIY------------GGTLLAMCSND-FICFYDWAECRLIR---RI---DVTVKNLYW 471 (915)
Q Consensus 420 --~~~~~~~~-------~~s~~~i~------------~g~~La~~~~~-~v~~~d~~~~~~i~---~~---~~~i~~v~~ 471 (915)
...+.+++ .|..-+.. ..++||+++.. +|++|...-.++.. .+ ...|++|+|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 11122222 11110000 36688888887 99999876443322 22 247999999
Q ss_pred cCCCCEEEEEeCCeEEEEE
Q 002493 472 ADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 472 s~dg~~la~~~~~~~~~~~ 490 (915)
..+...+.+.+.|..++-|
T Consensus 605 l~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred eeCCceEEecCCCceEEEE
Confidence 9776666666666554433
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=243.62 Aligned_cols=291 Identities=24% Similarity=0.356 Sum_probs=236.8
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC---ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002493 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTM---DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~---~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
.++.+++|.+.+..++|+|- |..|++|+.|+.|++|+...+ .+...+ .+|+..|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678889999999999998 889999999999999998853 233333 3799999999999999999999999999
Q ss_pred EEEECCC-CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCc
Q 002493 124 KLWDWEK-GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 124 ~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
.||.-.. ...+...+++|...|.|++|++ ++++|++++.|++|-||.+..+. ....++.|...|..+.|+|..+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED- 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-
Confidence 9997653 3578889999999999999999 99999999999999999987543 4567789999999999999877
Q ss_pred CEEEEEeCCCeEEEEECC---CCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEE
Q 002493 200 PYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|++++.|.+|++|+-. ...+++++.+|...|.+++|+|.|..|++++.|++|+||...+.- -..|...++.
T Consensus 164 -lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 -LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred -eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 89999999999999866 346899999999999999999999999999999999999855221 1235577899
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002493 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
+.|. ...|++++.|+.++++.... .+++....+..+.-..|+..+
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~---------------------------------~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD---------------------------------SPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC---------------------------------CCCCchHHHHHhhhccccccc
Confidence 9998 45799999999999852221 112222222222335667788
Q ss_pred ceEEECCC-CCEEEEEc-CCcEEEEEe
Q 002493 357 QSLKHNPN-GRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 357 ~~l~~s~~-g~~lav~~-~~~~~i~~~ 381 (915)
.+++|+|. ..+|+.++ ||.+.+|..
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99999994 45666666 788888864
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=280.16 Aligned_cols=288 Identities=21% Similarity=0.391 Sum_probs=254.9
Q ss_pred hhhhhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
.+...+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45667899999999999999 888999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
||++||+++..+.. ...+.|+.|+|++ +.+++|+.|+.|+.||++++ .+.+.+..|-+.|..+.|-+ ++..+++.+
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999999874 4578999999998 78899999999999999999 67788888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC---cEEEEecCCcc--CeEEEE
Q 002493 163 LDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTH--NVSAVC 236 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--~i~~i~ 236 (915)
.|++++||+.+.+-++... ........|+..+|++. ++++-+.|+.|.++.+... .....+.+|.. .-..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887766443 33445567888888887 8999999999999986542 22344566643 356789
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC-CCEEEEEecCCeEEEe
Q 002493 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVK 298 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~g~~dg~v~i~ 298 (915)
|||||.+|++|+.||.+.+||.++-+++..++.|.+.+..+.|+|. ...+|+++.+|.|.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999999999999999999999999999999999999997 4578889999999997
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=250.73 Aligned_cols=285 Identities=19% Similarity=0.327 Sum_probs=242.4
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+..+.+|++.|..+.|+|+|.+|++|+.|..|.+|+. ...+....+++|++.|..+.|.++++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3456789999999999999999999999999999995 444556778899999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
+++ +....+.+|...|.++.-+..+..++.+++.||++++||+++...++++. .+.+++++.|...++ -+.+|+-|
T Consensus 120 ~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~--qv~sggId 195 (338)
T KOG0265|consen 120 ETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD--QVISGGID 195 (338)
T ss_pred ccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc--ceeecccc
Confidence 999 77888899999999988655566788899999999999999988887765 467789999998888 49999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCC----ccEEEEEEe
Q 002493 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL----ERVWAIGYM 280 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~----~~v~~i~~~ 280 (915)
+.|++||++.+.....+.+|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.++. .....++|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999999999999999999999999999999999999999999999998754 3455565543 235678999
Q ss_pred cCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002493 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|+++.+.+|+.|..+++|..... .++ ..++.+.+.|..+.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r---------~~l-------------------------------yklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSR---------RIL-------------------------------YKLPGHYGSVNEVD 315 (338)
T ss_pred CCCCccccccccceEEEeecccc---------cEE-------------------------------EEcCCcceeEEEee
Confidence 99999999999999999732221 111 12466677788999
Q ss_pred ECCCCCEEEEEc-CCcEEE
Q 002493 361 HNPNGRFVVVCG-DGEYII 378 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i 378 (915)
|+|...++..|+ |.++++
T Consensus 316 Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ecCCCcEEEEeccCceeEe
Confidence 999999988887 555543
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=263.58 Aligned_cols=283 Identities=21% Similarity=0.336 Sum_probs=257.3
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEE--------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF--------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vw 84 (915)
+..+-+-|..|||||++|++|+.||-|.+||+.+|+..+.+ -.++.+|.|+.|+.|...+++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44566889999999999999999999999999999776544 3478899999999999999999999999999
Q ss_pred ECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 85 d~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
.+.+|.+++.|. +|+..|+|+.||.|+..+++++.|.++++--+.++ ++.+.+.+|.+.|....|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999997 89999999999999999999999999999999999 88889999999999999999 9999999999
Q ss_pred CCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC---CccCeEEEEEe
Q 002493 164 DRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVSAVCFH 238 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~i~~~ 238 (915)
||+|++|+..+.++..+++ +...+|+++...|.... .++++...++|+|.+++ |+.++++.. ..+...+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999998887775 34567888888887654 78888889999999987 888888864 34457778899
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
|.|.++.+.++|+.++.|.+.+|++..++..|...+..++-+|..+.+|+-+.||.+.+|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999883
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-33 Score=253.43 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=265.2
Q ss_pred hhhhcccCCCCEEEEEEcC---CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 7 IKRKLAQRSERVKSVDLHP---SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp---~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
+.....||+.+|..++||| +|-+|++++.||.-.+-+-++|.-+-+|.+|.+.|.+...+.+...-++++.|-+-+|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3445679999999999997 7889999999999999999999999999999999999999999989999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
||.-+|..+..|. |...|..++|+.|.++|++|+.+..++|+|++........+.+|.+.|..+.|.. ..+.|++++.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc
Confidence 9999999999886 7888999999999999999999999999999988777788899999999999998 7788888899
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002493 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
|++|++||.++++.+.++. ...+|+++.++++|+ +++....+.|.+||..+...++.++ ....|.+.+++|+...
T Consensus 164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeecc-CccccccccccCCCce
Confidence 9999999999999998887 567899999999997 7777778899999999988888877 4567999999999999
Q ss_pred EEEEEcCCcEEEEeCCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCc
Q 002493 244 IITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
+++|++|+.++.||..++..+..+ +.|.++|.|+.|+|+|...++|+.||+|++|.....
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999999988885 788999999999999999999999999999965443
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=310.64 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=240.5
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC----c----eeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----T----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFI 81 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i 81 (915)
+..|.+.|.+++|+|+|.+||+|+.||.|+|||..+. . ....+. +...|.+++|++ ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997542 1 122233 456899999987 47899999999999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
++||+.+++.+..+..|.+.|++++|+| ++.+|++|+.||+|++||++++ .....+..+ ..+.++.|++.++..|++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999999999999999999999997 7889999999999999999987 455555544 578999997657999999
Q ss_pred EECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCeE
Q 002493 161 ASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVS 233 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~ 233 (915)
|+.||.|++||+++.+ +...+.+|...|.++.|. ++. ++++++.|+.|++||++. ..++..+.+|...+.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 566778899999999997 444 799999999999999974 357888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeee-------------ecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-------------NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+++|+|++++|++|+.||.|++|+......+..+ ..+...|.+++|+|++..|++|+.+|.|.+|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 9999999999999999999999997665433222 1233569999999999999999999999997
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=268.51 Aligned_cols=272 Identities=25% Similarity=0.438 Sum_probs=240.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
.+..|.|+.+. ...+++|..|++|+|||..+..+.+.+.+|.+.|.|+.|.. +.|++|+.|.+|+|||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 45678888886 44589999999999999999999999999999999999854 599999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
++-.|...|..+.|+ +.++++++.|.+|.+||+.+.. .+...+.+|...|..+.|+ ..++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 999999999999998 4589999999999999998652 3345678999999999996 46999999999999999
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002493 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
+.+.+.+.++.+|..+|.|+.+. +. ++++|++|.+|++||+..|.+++.+++|..-|.++.|.. +.+++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~r--lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--DR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhcc--Ce--EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 99999999999999999999983 33 899999999999999999999999999999999999964 6899999999
Q ss_pred cEEEEeCCCcc---------eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCC
Q 002493 252 TVRIWHATTYR---------LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 252 ~v~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~ 302 (915)
+|++||+.++. ++.++..|.++|..+.|. ...+++++.|.+|.+|....
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 99999988654 344566778899999994 56788899999999985433
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=262.07 Aligned_cols=288 Identities=25% Similarity=0.377 Sum_probs=256.5
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+...+.+|..+|+.+.|+|+-..+++++.|++|++||+.+++....+++|.+.+..+.|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.+...+.+.+.+|...|.+++|-| .++++++++.|.+|+.|++.++-++.++.+|..-|..++.+.+|. ++++++.|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~As~s~d 256 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIASCSND 256 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEEecCCC
Confidence 986678888899999999999999 789999999999999999999999999999999999999887776 89999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCC---------------CCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc
Q 002493 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE---------------LPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (915)
.++++|-+.++++...++.|..+|-+++|.|. ++++.+++.|++|++||+.++.++.++.+|...
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999999999999999999999999774 258999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002493 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 274 v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
|..++|+|.|++|+++.+|+++++|. +.+++.. +.+..++
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwd------------------------------------l~~~~cm----k~~~ah~ 376 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWD------------------------------------LKNLQCM----KTLEAHE 376 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEE------------------------------------eccceee----eccCCCc
Confidence 99999999999999999999999973 2222221 1234566
Q ss_pred cCCceEEECCCCCEEEEEc-CCcEEEE
Q 002493 354 LYPQSLKHNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~-~~~~~i~ 379 (915)
..++++.|..+..++++|+ +..+.+|
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeee
Confidence 6777888887777777776 6666665
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.6e-28 Score=253.96 Aligned_cols=475 Identities=15% Similarity=0.196 Sum_probs=336.7
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee-EEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
-....|++||||.+.+.||++-.+|.|.||++...-.. ..+.++ +..|.+++|+ ++..|++.+-+|.|.-||+.+++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 34678999999999999999999999999999886443 445554 5689999999 45568888899999999999999
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE-EEeecCCccEEEEEEccCCCCEEEEEECCCcEEE
Q 002493 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
....+....+.|++++.+|.+..+++|++||.+...+...+.... ..+....++|.++.|+| ++..++.|+.||.|++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRI 180 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEE
Confidence 999999999999999999999999999999988888887763322 34555678999999999 8888999999999999
Q ss_pred EECCCCCCceEEe--------cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002493 170 WNLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 170 ~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
||..++....... ....-|.++.+-.++ .|++|.+.|+|.+||...+..++.+..|...|.+++..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 9999887665221 122346677777665 59999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcce----eeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCccee-----EecCCC
Q 002493 242 PIIITGSEDGTVRIWHATTYRL----ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA-----SMDNSG 312 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~-----~~~~~g 312 (915)
.++++++.|+.|..|...+... ......|...+.+++..++ .+++|+.|+.+.+-..++.+.. ...+.+
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccccc
Confidence 9999999999999998766543 2233456678999999877 8999999999998543331110 000111
Q ss_pred c-EEEEeeCceEEEEeeecccceec----cCCceeeeee-eecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc-
Q 002493 313 K-IIWAKHNEIQTVNIKSVGADYEV----TDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR- 385 (915)
Q Consensus 313 ~-~~~~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~- 385 (915)
. +..+..+.+...........|.+ ..|+.-...+ +-.-...-.+++-+.||+|+++++++-.++.+|.+....
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~ 415 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN 415 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcc
Confidence 1 11111111111111111111211 1111111000 001122335788999999999999998889999776522
Q ss_pred ---------ccCccceeEEEEecCCcEEEEec--CCeEEEeccC---ccceeeeec----------CcccceeecCcEEE
Q 002493 386 ---------NRSFGSALEFVWSSDGEYAVRES--SSKIKIFSKN---FQEKRSVRP----------TFSAERIYGGTLLA 441 (915)
Q Consensus 386 ---------~~~~~~~~~~~~s~~~~~l~~~~--~~~v~v~~~~---~~~~~~~~~----------~~s~~~i~~g~~La 441 (915)
......+..+.|+-|+..++..+ ...+.+++.. +++...+.. ..+++ |+++|
T Consensus 416 vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd----G~yia 491 (691)
T KOG2048|consen 416 VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD----GNYIA 491 (691)
T ss_pred eeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----CCEEE
Confidence 11223567788887876555444 4666666543 222222211 34555 99999
Q ss_pred EeeCC-eEEEEeccCCcEE---EEEEccccEEEEcC-CCC-EEEEEeCCeEEEEEecHHHHHH
Q 002493 442 MCSND-FICFYDWAECRLI---RRIDVTVKNLYWAD-SGD-LVAIASDTSFYILKYNRDVVSA 498 (915)
Q Consensus 442 ~~~~~-~v~~~d~~~~~~i---~~~~~~i~~v~~s~-dg~-~la~~~~~~~~~~~~~~~~~~~ 498 (915)
+.+.. .|.+|++++++.- .++...++.+.++| +.. .++..+++.++-++.+...+.+
T Consensus 492 a~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 492 AISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred EEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 88877 9999999988632 24456889999994 434 4445556677777765444443
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.4e-31 Score=254.68 Aligned_cols=277 Identities=27% Similarity=0.440 Sum_probs=242.1
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCC
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~g~~dg~i~vwd~~~~ 89 (915)
.|.+-|.++... +.++++|++||.++||| ..|+.++.+.+|.++|.+++|.-... .|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477888888777 78999999999999999 68889999999999999999965443 5999999999999998876
Q ss_pred cee----EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC------------------------eeEEEEeecC
Q 002493 90 DKV----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------WMCTQIFEGH 141 (915)
Q Consensus 90 ~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------------------------~~~~~~~~~~ 141 (915)
+.. +.-.+|...|.++...++|.++++|+.|.+|++|+..+. +.+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 542 333599999999999999999999999999999993221 2445668899
Q ss_pred CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-
Q 002493 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (915)
Q Consensus 142 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 220 (915)
..+|.++.|++ ...+++++.|.+|+.||+.++....++. ....++|+.++|..+ +|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc--eeeecCCCCceeecCCCCCCC
Confidence 99999999996 7899999999999999999998887776 467789999999766 89999999999999999854
Q ss_pred --EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002493 221 --CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 221 --~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~ 296 (915)
..+++.+|.+.|.++.|+|... .|++|+.||++++||+++.+ ++..+..|...|.++.|.. +..|++|+.|..++
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 4678899999999999999665 78899999999999999887 8999999999999999974 56899999999999
Q ss_pred Ee
Q 002493 297 VK 298 (915)
Q Consensus 297 i~ 298 (915)
+.
T Consensus 414 i~ 415 (423)
T KOG0313|consen 414 IF 415 (423)
T ss_pred Ee
Confidence 85
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=1.1e-29 Score=244.98 Aligned_cols=325 Identities=15% Similarity=0.200 Sum_probs=272.6
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
..+.+|..|..+|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|++.|+++.||.+|.+|++|.-+|.|.||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
..++... ..+...-..+.-+.|+| ....|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+ .++++..
T Consensus 135 ~stg~~~-~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--r~~tgy~ 210 (399)
T KOG0296|consen 135 VSTGGEQ-WKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--RILTGYD 210 (399)
T ss_pred cccCceE-EEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--eEEEEec
Confidence 9998443 34434456688899999 899999999999999999999888889999999999999999988 6999999
Q ss_pred CCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec--------C---CccEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY--------G---LERVW 275 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~---~~~v~ 275 (915)
||+|++||..+++++..+... .....++.++..+..++.|+.++.+++-+..+|+.+...+. + ...|-
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999999999998888643 34577889999999999999999999999988988776663 1 23456
Q ss_pred EEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccC
Q 002493 276 AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (915)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 355 (915)
++.|+..-++.|+|+-||+|.||......+ +..-.++..
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-----------------------------------------R~~c~he~~ 329 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTL-----------------------------------------RHICEHEDG 329 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchh-----------------------------------------heeccCCCc
Confidence 667777788899999999999973221111 011223445
Q ss_pred CceEEECCCCCEEEEEcCCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec-CCeEEEecc
Q 002493 356 PQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSKIKIFSK 417 (915)
Q Consensus 356 ~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~ 417 (915)
|..+.|-++.-+++.|.+|.++.|+.+.++.+ +...|.+++.+|+++++++.+ |++.+||..
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 77888888555666667999999999988644 456789999999999999998 688888753
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.6e-30 Score=260.57 Aligned_cols=276 Identities=21% Similarity=0.409 Sum_probs=242.7
Q ss_pred CCCEEEEEEcCCCCe-EEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 15 SERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
.+.|.+++|||..++ +|+++ +-.|.||+..+....+.+.-....|.++.|-.||++|++|+..|.|+|||+++...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 467999999998875 44444 5679999999888888888888999999999999999999999999999988877788
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEEC
Q 002493 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.+.+|..++..+.|+|+++ .+++|++|+.+++||+.+.. ....+.+|+.+|.|.+|+|..+.++++|+.||+|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8999999999999999654 57788899999999999984 466788999999999999977889999999999999999
Q ss_pred CCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002493 173 GSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
+... .+..+ .|..+|..+.+-|+|. .+++++ ...|++||+-+|.. +..+..|...|+|+++..++..|++|+-|
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs--~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS--LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC--EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 9874 44444 5899999999999987 466655 56899999986554 44455599999999999999999999999
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+.|++||+.+++.+..+..+ ++|.+++.+|+++.+++|..+|.+.+
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeee
Confidence 99999999999999999887 89999999999999999999999887
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8.3e-28 Score=255.45 Aligned_cols=464 Identities=15% Similarity=0.248 Sum_probs=343.1
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Q 002493 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-D 90 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~ 90 (915)
..+.+.|+|++-+.+ ++.++. ...|.+|. ........+..|...|.-+. +=|.+++++..++.+.||+..+. +
T Consensus 73 ~~lp~~I~alas~~~--~vy~A~-g~~i~~~~-rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 73 KPLPDKITALASDKD--YVYVAS-GNKIYAYA-RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCCceEEEEecCc--eEEEec-CcEEEEEE-ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 457788999887654 444444 45688886 33355566777877776554 56889999999999999998874 1
Q ss_pred e----eEEEecCCCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECC
Q 002493 91 K----VKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 91 ~----~~~~~~~~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (915)
. +..++...+.|+++ ++|.. +.++.|+..|.+.+|+++++ +....+.++...|+++.-+| --..+++|..+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCC-cceEEEEeccC
Confidence 1 12223333347776 45543 46899999999999999999 77888899999999999999 78899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCE
Q 002493 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPI 243 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~ 243 (915)
|+|.+++++.++.+.+++...+.|++++|..+|.. ++++|+..|.+.+||++..+.+..+. .|.+.|....|.|..+.
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 99999999999999999866799999999998874 88999999999999999877766665 68899999999999999
Q ss_pred EEEEEcCCcEEEEeCC--Cc--ceeeeeecCCccEEEEEEe-cCCCEEEEEecCCeEEEec----------C--------
Q 002493 244 IITGSEDGTVRIWHAT--TY--RLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI----------G-------- 300 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~--~~--~~~~~~~~~~~~v~~i~~~-~~~~~l~~g~~dg~v~i~~----------~-------- 300 (915)
+++.+.|+.+++|=.. .| +.++.-.+|..+..++.|. .+|..+.+++.|++++.+. +
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 9999999998888544 33 4677778899999999998 7788999999999777632 1
Q ss_pred -----------CCcceeEecCCC--cEEE-----EeeCceEEEEeeecccceeccCCce--eeeeeeecCCcccCCceEE
Q 002493 301 -----------REEPVASMDNSG--KIIW-----AKHNEIQTVNIKSVGADYEVTDGER--LPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 301 -----------~~~~~~~~~~~g--~~~~-----~~~~~i~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~l~ 360 (915)
+.+++..+...+ ...| ...+.... ..|+..+... -.+..+.+......+.+++
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~-------~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA-------YTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE-------EEEeccCcccccEEecCccccccCcceEEEE
Confidence 112233332211 1111 11111111 1122222111 1122233344567788999
Q ss_pred ECCCCCEEEEEc-CCcEEEEEeeccc--------ccCccceeEEEEecCCcEEEEec-CCeEEEeccC------------
Q 002493 361 HNPNGRFVVVCG-DGEYIIYTALAWR--------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN------------ 418 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~------------ 418 (915)
.++.|++..+|. .|.+-+|+.+++. ..+.+.++.++...-++.+++++ +|.+++||..
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 999999999987 8999999988763 23446788888776677777776 8999999832
Q ss_pred ------------------------------------ccceee--eecCcccceeecCcEEEEeeCC-eEEEEeccCCcEE
Q 002493 419 ------------------------------------FQEKRS--VRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (915)
Q Consensus 419 ------------------------------------~~~~~~--~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i 459 (915)
|.++.. ....|||| |++|++++.| +|++||+.++.++
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D----grWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD----GRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC----CcEEEEeecCCcEEEEeccCccee
Confidence 111111 11278888 9999999998 9999999999999
Q ss_pred EEEE--ccccEEEEcCCCCEEEEEeCC-eEEEEEecHHHH
Q 002493 460 RRID--VTVKNLYWADSGDLVAIASDT-SFYILKYNRDVV 496 (915)
Q Consensus 460 ~~~~--~~i~~v~~s~dg~~la~~~~~-~~~~~~~~~~~~ 496 (915)
-.+. .++.++.|||+|++||++..+ .-+.+|.|+..+
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence 8776 589999999999999999766 444556666444
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-29 Score=265.12 Aligned_cols=285 Identities=30% Similarity=0.506 Sum_probs=244.4
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002493 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+.+|..+|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002493 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
+ .....+..|...+.++.|+| ++.++++++.++.|.+||+.+++....+..|...+.++.|+|++. ++++++.++.
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~ 158 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGT 158 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCc
Confidence 6 55666778888999999999 677888888899999999998888888888889999999999855 7777777999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
|++||+++++.+..+..|...+.++.|+|+++.+++++.+|.|++||+.+++....+..+...+.++.|+|++.++++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999998998888888888999999999999999999999999999999888888877878999999999988888888
Q ss_pred cCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002493 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
.+|.+.+|..... ... ..+..+...+..+.|+|++++|++
T Consensus 239 ~~~~i~i~~~~~~---------~~~-------------------------------~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 239 EDGTIRVWDLRTG---------ECV-------------------------------QTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCCcEEEEEcCCc---------eeE-------------------------------EEccccCCcEEEEEECCCCCEEEE
Confidence 8999998632210 000 001123335678888888888887
Q ss_pred Ec-CCcEEEE
Q 002493 371 CG-DGEYIIY 379 (915)
Q Consensus 371 ~~-~~~~~i~ 379 (915)
++ ++.+.+|
T Consensus 279 ~~~d~~i~iw 288 (289)
T cd00200 279 GSADGTIRIW 288 (289)
T ss_pred ecCCCeEEec
Confidence 76 6777776
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9e-30 Score=230.66 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=220.5
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
..+.+..+.++|+.+.|+-+|++.++++.|.+|++||...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC--CCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.++ +..+.+.+|...|..+.|+. +...+++|+.|.++++||.++ .+|++.+......|.++..+. . .|++|+
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--h--eIvaGS 162 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--H--EIVAGS 162 (307)
T ss_pred ccC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--c--EEEeec
Confidence 999 78889999999999999998 889999999999999999876 467888888888999998753 3 599999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccE--EEEEEecCCC
Q 002493 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSR 284 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~ 284 (915)
.||+++.||++.|+..... ...+|++++|+++++..++++.|+++++.|-.+|+++..+.+|...- ...+++....
T Consensus 163 ~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 9999999999998875544 35689999999999999999999999999999999999999886543 3456677778
Q ss_pred EEEEEecCCeEEEecCCC
Q 002493 285 RIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 285 ~l~~g~~dg~v~i~~~~~ 302 (915)
.+++|++||.+.+|..-+
T Consensus 241 hV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred eEEeccCCceEEEEEecc
Confidence 999999999999985433
No 60
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=6.1e-29 Score=258.32 Aligned_cols=439 Identities=15% Similarity=0.241 Sum_probs=305.4
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEEEEE
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRVYN 85 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i~vwd 85 (915)
.+..|..+++|++|||+|+|+|+|- ....++||++.....+..|..|+-.|+|++|+|.++++++.+. |..|.+||
T Consensus 73 lvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d 152 (1080)
T KOG1408|consen 73 LVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND 152 (1080)
T ss_pred eecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence 3445677999999999999999985 4667999999998889999999999999999999999997655 77888998
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe---------------------------------
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--------------------------------- 132 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------------------- 132 (915)
++-.-... -..-...|..++|+.+|.|+++.+. ..|++|.++.+.
T Consensus 153 Wr~N~~~a-snkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gic 230 (1080)
T KOG1408|consen 153 WRVNSSGA-SNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGIC 230 (1080)
T ss_pred hhhccccc-ccccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccc
Confidence 75322111 1122345666666666666665543 356666544220
Q ss_pred ------------------------------------------------------------eEEEEe-ecC----------
Q 002493 133 ------------------------------------------------------------MCTQIF-EGH---------- 141 (915)
Q Consensus 133 ------------------------------------------------------------~~~~~~-~~~---------- 141 (915)
....++ ..|
T Consensus 231 Aestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~ 310 (1080)
T KOG1408|consen 231 AESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS 310 (1080)
T ss_pred ccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcc
Confidence 000000 000
Q ss_pred -------------CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCC--------
Q 002493 142 -------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGG-------- 197 (915)
Q Consensus 142 -------------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~-------- 197 (915)
-.....+.|+| ....+.+...|..+++||++..+.+ ..+-.|...|+.+.-.|-.
T Consensus 311 q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac 389 (1080)
T KOG1408|consen 311 QPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAAC 389 (1080)
T ss_pred cccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccccc
Confidence 01134667777 6778888899999999999875433 3344577777766655511
Q ss_pred -CcCEEEEEeCCCeEEEEECCCCc---EEE----------------------------------EecCCccCeEEEEEeC
Q 002493 198 -DKPYLITGSDDHTAKVWDYQTKS---CVQ----------------------------------TLEGHTHNVSAVCFHP 239 (915)
Q Consensus 198 -~~~~l~~~~~dg~i~iwd~~~~~---~~~----------------------------------~~~~~~~~i~~i~~~~ 239 (915)
....+++++.|++|++||+..+. ..+ ..-.....+.+++.+|
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 01158999999999999987521 100 0001234589999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC---CCEEEEEecCCeEEEecCCCcceeEecCCCcEEE
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS---SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIW 316 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~ 316 (915)
+|++|++|...|.+++|++...+....+..|...|.|+.|+.- .++||+++.|..|.++.....
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn------------- 536 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN------------- 536 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-------------
Confidence 9999999999999999999999999999999999999999864 568889999988887421110
Q ss_pred EeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC--CEEEEEcCCcEEEEEeec----cc-----
Q 002493 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG--RFVVVCGDGEYIIYTALA----WR----- 385 (915)
Q Consensus 317 ~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g--~~lav~~~~~~~i~~~~~----~~----- 385 (915)
......+..+...++++.|--+| .....|+..+.+.|+... .+
T Consensus 537 --------------------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~ 590 (1080)
T KOG1408|consen 537 --------------------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRH 590 (1080)
T ss_pred --------------------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccc
Confidence 00112234556677888887777 555666644444443322 11
Q ss_pred --ccCccceeEEEEecCCcEEEEec-CCeEEEeccCcc-ceeeeec-----------CcccceeecCcEEEEeeCC-eEE
Q 002493 386 --NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQ-EKRSVRP-----------TFSAERIYGGTLLAMCSND-FIC 449 (915)
Q Consensus 386 --~~~~~~~~~~~~s~~~~~l~~~~-~~~v~v~~~~~~-~~~~~~~-----------~~s~~~i~~g~~La~~~~~-~v~ 449 (915)
....+...+++..|..+++++.+ |..|+||+++.. ..+.++. ...|. |-+||+...| +++
T Consensus 591 t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl~ 666 (1080)
T KOG1408|consen 591 TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTLC 666 (1080)
T ss_pred ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC----ccEEEEeecCCceE
Confidence 11234567888889999999888 899999996532 2222332 33344 7788888777 999
Q ss_pred EEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEE-EEEecHH
Q 002493 450 FYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFY-ILKYNRD 494 (915)
Q Consensus 450 ~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~-~~~~~~~ 494 (915)
|||..+|+++.+..+ -|+.+.|.+|.+.|+.++.|+.+ +|....+
T Consensus 667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 999999999988765 68999999999998887766655 5554433
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=232.35 Aligned_cols=279 Identities=17% Similarity=0.263 Sum_probs=247.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE--EEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVAR-KQWVVAGADDMFIRVY 84 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vw 84 (915)
.+.+.+|...|.+++|+.+|..|++|+.|+++.+|++......+. ..+|.+.|-.++|+|. ...+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 377889999999999999999999999999999999988765554 4578889999999884 5789999999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECC
Q 002493 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (915)
|..++++...+....+.| -+.|+|+|.++++++.|..|.+.|.++. +..... .....+.-++|+. ++++|+.....
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeehh-cccceeeeeeecC-CCCEEEEecCC
Confidence 999999998887555444 5899999999999999999999999876 333322 2345577888985 78888888888
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002493 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
|+|.|.....-+++..++.|.....|+.|+|+|+ |+++|+.|..+.+||++..-|++.+..+.-+|..++|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCC
Q 002493 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg 293 (915)
+++|+|..|-|=++.+|..+..++.. ++...++|+|...+||.+++|.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccCccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999988755 7889999999999999988764
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=277.67 Aligned_cols=281 Identities=25% Similarity=0.446 Sum_probs=242.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (915)
...|.++.|+++|+.+++++.++.+++|+..+++ ....+.+|...|.+++|+|++.++++++.|++|++||+......
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 6789999999999999999999999999997777 67777899999999999999999999999999999999555578
Q ss_pred EEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002493 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.+++.+|...|++++|+| .++++++|+.|++|++||++++++...+.+|..+|.+++|++++. +|++++.|+.|++|
T Consensus 239 ~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~--~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN--LLVSASYDGTIRVW 315 (456)
T ss_pred EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC--EEEEcCCCccEEEE
Confidence 889999999999999999 669999999999999999999999999999999999999999988 89999999999999
Q ss_pred ECCCCc--EEEEecCCccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc---EEEEEEecCCCEEE
Q 002493 215 DYQTKS--CVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAIGYMKSSRRIV 287 (915)
Q Consensus 215 d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~ 287 (915)
|+.++. ++..+..+... +++++|+|++.++++++.|+.+++||+..+.....+..+... +.+...++.+.+++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 999998 56777766555 999999999999999999999999999999998888887653 44556688999999
Q ss_pred EEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCc-ccCCceEEECCCCC
Q 002493 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC-DLYPQSLKHNPNGR 366 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~s~~g~ 366 (915)
+|+.|+.|.+|....... +. .+..+ ...+..+.++|...
T Consensus 396 sg~~d~~v~~~~~~s~~~------------------------------------~~----~l~~h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGGI------------------------------------LQ----RLEGHSKAAVSDLSSHPTEN 435 (456)
T ss_pred EEeCCceEEEEeCCccch------------------------------------hh----hhcCCCCCceeccccCCCcC
Confidence 999999999974322111 00 01222 34556778888888
Q ss_pred EEEEEc---CCcEEEEE
Q 002493 367 FVVVCG---DGEYIIYT 380 (915)
Q Consensus 367 ~lav~~---~~~~~i~~ 380 (915)
+++..+ |+.+.+|.
T Consensus 436 ~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWK 452 (456)
T ss_pred eeeecCcCCCceEEEec
Confidence 888776 67777774
No 63
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3e-29 Score=260.47 Aligned_cols=715 Identities=16% Similarity=0.154 Sum_probs=438.2
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002493 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~ 80 (915)
..+.+.++|.||++.|.-+.|+...+.|-+...+|.|.||-+-.|.-..... -..+.|.+++|+.+|..|++.-.||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 4567888999999999999999999999999999999999987775443322 24567999999999999999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee------E----EEEeecCCccEEEEEE
Q 002493 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------C----TQIFEGHSHYVMQVTF 150 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~----~~~~~~~~~~v~~~~~ 150 (915)
|.|=.++.. .+.--.-.......+.|++|...++.+-.+|.+.++|...+.. + ...+......|-.+.|
T Consensus 139 vIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeeccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 998877643 3222111122345789999999999898999999999765411 1 1112223344667777
Q ss_pred cc-------CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC---------CeEEEE
Q 002493 151 NP-------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---------HTAKVW 214 (915)
Q Consensus 151 ~p-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iw 214 (915)
.. .+...|+++..+|.+.+..-.+......+. ..-.+....|+++|. +|++++.+ +.|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCc--EEEEccCcccccCccccceEEEe
Confidence 52 266789999999998887554433333333 336678899999988 78887754 356676
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--------eeeeeecCCccEEEE---------
Q 002493 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--------LENTLNYGLERVWAI--------- 277 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~i--------- 277 (915)
.. -|+.+.+++.....|++++|-..|-.++.+- |+.|.+=+++..- .+...+....+-.++
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 64 4888889998889999999998887776654 6677766654211 111111111112222
Q ss_pred ------------EEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeee
Q 002493 278 ------------GYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLA 345 (915)
Q Consensus 278 ------------~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~ 345 (915)
+++.+.-.|+.-.++|.+.-. ..+..-+ .+.+..+- .+-|..+
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~-------s~le~~~--------~~~~l~LC-------NSIGT~l--- 427 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEY-------STLENRS--------RVYFLQLC-------NSIGTSL--- 427 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcch-------hhhhccc--------ceEEEeee-------cccCCcC---
Confidence 222221122222222221110 0000000 01111110 0011111
Q ss_pred eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccccc------------C-------------------------
Q 002493 346 VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR------------S------------------------- 388 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~------------~------------------------- 388 (915)
......+......-+|.++++++...+.+|.....+.. .
T Consensus 428 ----D~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~ 503 (1189)
T KOG2041|consen 428 ----DYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS 503 (1189)
T ss_pred ----CCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC
Confidence 11222334445556778899999999999954432100 0
Q ss_pred ccceeEEEEecCCcEEEEecCCeEEEeccCccceeeeecCcccc--eee---cCcEEEEeeCC-eEEEEecc---CCcEE
Q 002493 389 FGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAE--RIY---GGTLLAMCSND-FICFYDWA---ECRLI 459 (915)
Q Consensus 389 ~~~~~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~--~i~---~g~~La~~~~~-~v~~~d~~---~~~~i 459 (915)
..++..++. .|.-+++...+|.|+-|++.......-. ..+|. .+. +...||+..-- .+.|.|+. +|..+
T Consensus 504 ~DpICAl~~-sdk~l~vareSG~I~rySl~nv~l~n~y-~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql 581 (1189)
T KOG2041|consen 504 KDPICALCI-SDKFLMVARESGGIYRYSLNNVVLTNSY-PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQL 581 (1189)
T ss_pred CCcceeeee-cceEEEEEeccCceEEEEecceeeeecc-ccCchheeEeeccCcchhhhhhhhceeeeeecccccCccee
Confidence 011222222 2223344444778887776543322211 11111 111 24566665544 66677765 45544
Q ss_pred EEEE----ccccEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCE
Q 002493 460 RRID----VTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDC 534 (915)
Q Consensus 460 ~~~~----~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~ 534 (915)
.-+. -.|+.+.|..|. .++|...+.++++++-| +..+++...|+++.|+.+. |++...+ ++
T Consensus 582 ~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn--------dpeEp~s~sGyIc~FedLe-----itsVlld-~I 647 (1189)
T KOG2041|consen 582 KLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN--------DPEEPSSVSGYICLFEDLE-----ITSVLLD-KI 647 (1189)
T ss_pred eeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc--------CccccccccceEEEeeceE-----EEEEEHh-hH
Confidence 4232 379999999665 45678888888888733 4456777888888888762 3333222 22
Q ss_pred EEEEccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCC
Q 002493 535 FIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSI 614 (915)
Q Consensus 535 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i 614 (915)
+. +++.....+.+... +..++..+.++....-....-++.++.+...| -+....++.+.+++.|+..+ +
T Consensus 648 l~-~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLW-----rllAe~Al~Kl~l~tAE~AF--V 716 (1189)
T KOG2041|consen 648 LL-TPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLW-----RLLAEYALFKLALDTAEHAF--V 716 (1189)
T ss_pred hc-CcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHH-----HHHHHHHHHHHhhhhHhhhh--h
Confidence 22 23333333433222 23333222221111111112222222211111 11235667677888876554 2
Q ss_pred CcchH-------------------HHHHHHHHhCCChhhhhhcccC---ccceeeeecccCCHHHHHHHHHHcCC-----
Q 002493 615 PKEHH-------------------NSVARFLESRGMIEEAIEVATD---PDYRFELAIQLGRLEVAQEIATEVQS----- 667 (915)
Q Consensus 615 ~~~~~-------------------~~~~~~~~~~~~~~~al~~~~~---~~~~f~~~l~l~~~~~A~~~a~~~~~----- 667 (915)
....+ ..+..| .|.+++|-...-| .+.+.+|++++|+|-..+++.+...+
T Consensus 717 rc~dY~Gik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~ 793 (1189)
T KOG2041|consen 717 RCGDYAGIKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDE 793 (1189)
T ss_pred hhccccchhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchH
Confidence 22222 222223 3555566554433 45567999999999999999997432
Q ss_pred --hhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCC--------------HHHHHHHHHHHHHcCCchHHHH
Q 002493 668 --ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGD--------------AEGISKLASLAKEQGKNNVAFL 731 (915)
Q Consensus 668 --~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~ 731 (915)
+..|+.+|+......+++.|.++|.+++|..+.+.++....+ .+.+..++++....|++..|.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 457888888888888888888888888877777666655444 4445567888899999999999
Q ss_pred HHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002493 732 CLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 732 ~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~ 782 (915)
+|+..++.+.|+..+...+||.+|+++|+.+...++..++...+..|...+
T Consensus 874 a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~ 924 (1189)
T KOG2041|consen 874 AYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA 924 (1189)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999988888886543
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-29 Score=234.29 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=245.0
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
.++||..+++.+.++.+|.+|.+++.|..+.||-..+|+.+-++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCC------eeEEEEeecCCccEEEEEEccCCCCEE
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
+.+..++. ..+|..+.|+++|++++.++++ +.|.++|++.. ..+...+..+.+.++.+-|.| -+..|
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 99999884 6689999999999988877653 67999998832 244555566778899999999 88999
Q ss_pred EEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002493 159 ASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
++|..||.|.+||++++.. +.....|...|+.++++++.. ++++++.|.+-++||.++-+.++++. ...+|.+.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--eEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 9999999999999999754 344467889999999999887 89999999999999999999999887 5678999999
Q ss_pred eCCCCEEEEEEcCCc--E------------EEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 238 HPELPIIITGSEDGT--V------------RIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~--v------------~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+|....++.|+.... | ++|++-..+.+..+++|.++|.+++|+|+|+..++|+.||.|++.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 998777776653222 1 222222223456778899999999999999999999999999983
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.7e-28 Score=291.17 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=219.2
Q ss_pred CCcEEEEECCCCceeEEE-----EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----c----eeEEEecCCCCE
Q 002493 36 SGTVCIWNYQSQTMAKSF-----EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----D----KVKVFEAHTDYI 102 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~----~----~~~~~~~~~~~i 102 (915)
+|.+++|+..+......+ ..|...|.+++|+|+|++|++|+.|+.|+||+..+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677889988765554333 348889999999999999999999999999997542 1 122233 35679
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE
Q 002493 103 RCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 103 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (915)
.+++|+|. +.+|++++.||+|++||+.++ .....+.+|...|.+++|+|.++++|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 789999999999999999987 6677788999999999999867889999999999999999998887777
Q ss_pred ecCCCCeeEEEEEeC-CCcCEEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 182 DAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.. ...+.++.|++. +. ++++|+.||.|++||+++++ ++..+.+|...|+++.|. ++.+|++++.|+.|++||+.
T Consensus 615 ~~-~~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KT-KANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ec-CCCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 64 467889999654 44 89999999999999998765 567788899999999997 67899999999999999987
Q ss_pred C------cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002493 260 T------YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 260 ~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
. +..+..+..|...+.+++|+|++++|++|+.||.+.+|..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 4 3567788888889999999999999999999999999853
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-28 Score=229.39 Aligned_cols=290 Identities=18% Similarity=0.285 Sum_probs=248.5
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~--dg~i 81 (915)
++++.+.+..-.+.|.++.|+++|.+|++++.|..++|||..+++.++++..++-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 46677788888999999999999999999999999999999999999999988888999999988888888777 8899
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++.. .+...+..... ..++|.| .+-++|++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp-~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDP-EGLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECC-CCcEEEEe
Confidence 99999999999999999999999999999999999999999999999965 44444433333 3578999 88899999
Q ss_pred ECCCcEEEEECCCC--CCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCe---E
Q 002493 162 SLDRTIKIWNLGSP--DPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV---S 233 (915)
Q Consensus 162 ~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i---~ 233 (915)
.....|++||+++- .|..++. ......+.+.|+|+|+ +|+.+...+.+.+.|.-+|..+.++..+...- .
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88889999999864 3444443 3467789999999998 89999999999999999999988887765432 5
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
..+|+||++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-..++++ +..+.+|+..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 678999999999999999999999999999999888 47889999999986665554 4567777544
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2e-30 Score=253.94 Aligned_cols=285 Identities=21% Similarity=0.346 Sum_probs=250.8
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
.....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.+++..+++.+.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3456678899999999999998899999999999999987766 67788888899999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
|+++..+...++.+|.+.|+++.|......+++|+.|.+|++||+... .+...... ...+..+..+ ...+++|..
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec---ceeeeeccc
Confidence 999999999999999999999999988877999999999999999987 44444332 2345566654 467899999
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCeEEEEEeC
Q 002493 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHP 239 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~i~~~~ 239 (915)
|++|++||+++..+......+. .|+++..++++. -+++++.|.++.+.|+++......+... ....+.+.|||
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCe--EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999999988887654 899999999988 4888899999999999998887777542 23488999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc--EEEEEEecCCCEEEEEecCCeEEEe
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLER--VWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
++.|+++||.||.|+||++.++++...+...... |++++|+|.|..+++++.++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999888876555 9999999999999999999999887
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.8e-27 Score=247.80 Aligned_cols=477 Identities=18% Similarity=0.278 Sum_probs=324.2
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCCC
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 79 (915)
..+...+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++..... ..+.+|...+ ++++.......+.+.|+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~--~cv~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC--VCVVARSSVMTCKAADG 121 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE--EEEEeeeeEEEeeccCc
Confidence 345567899999999999999887 8999999999999999854433 3444444443 34433333333335566
Q ss_pred eEEEEECCC------------------------------------------------C--ceeEEEecCCCCEEEEEEcC
Q 002493 80 FIRVYNYNT------------------------------------------------M--DKVKVFEAHTDYIRCVAVHP 109 (915)
Q Consensus 80 ~i~vwd~~~------------------------------------------------~--~~~~~~~~~~~~i~~l~~s~ 109 (915)
.+.+||.+. . +.+..+.+|.+.|++++|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 666666521 1 23455678999999999987
Q ss_pred CCC---EEEEEEcCCeEEEEECCCCe--------------------eEE----------EEeecCCccEEEEEEccCCCC
Q 002493 110 TLP---YVLSSSDDMLIKLWDWEKGW--------------------MCT----------QIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 110 ~~~---~l~~~~~dg~i~iwd~~~~~--------------------~~~----------~~~~~~~~~v~~~~~~p~~~~ 156 (915)
.+. +|+++|.|..|+||.+.-+. ... ..+.+|...|+++.|+| .+.
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~ 280 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGL 280 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chh
Confidence 654 78899999999999764221 111 12348999999999999 778
Q ss_pred EEEEEECCCcEEEEECCCCCCceE-------EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC---cEEEEec
Q 002493 157 TFASASLDRTIKIWNLGSPDPNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLE 226 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 226 (915)
.|++++.|.++.+|......-+.. +.+...+.....|+|+++ .+++-+..|..++|..... .....+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccceeeccccc
Confidence 899999999999998765532221 123345678889999987 7888899999999984332 2345567
Q ss_pred CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCC
Q 002493 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT----YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 227 ~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~ 302 (915)
+|...|..+.|+|.|.+|++.|.|.+-|+|-.-. +..+..-+.|...++|+++-+....+++|.++..++++....
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 8999999999999999999999999999987441 123334456667899999998767788899999998852111
Q ss_pred cc-----------------------eeEecCCCcEEEE--eeCceE---EEEee--ecccc-eeccCCcee-----eeee
Q 002493 303 EP-----------------------VASMDNSGKIIWA--KHNEIQ---TVNIK--SVGAD-YEVTDGERL-----PLAV 346 (915)
Q Consensus 303 ~~-----------------------~~~~~~~g~~~~~--~~~~i~---~~~~~--~~~~~-~~~~~g~~~-----~~~~ 346 (915)
.- +..+--+.+.++. ....-. .+... ..... ..-+..+.+ -...
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 00 0011111122221 000000 00000 00000 000000000 0112
Q ss_pred eecCCcccCCceEEECCCCCEEEEEc------CCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec-CCeEEE
Q 002493 347 KELGTCDLYPQSLKHNPNGRFVVVCG------DGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSKIKI 414 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~s~~g~~lav~~------~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~-~~~v~v 414 (915)
..+-.|...+.+++.||+|+++|++. ...|++|....|... +.-.++.++|||||+||++.+ |.++.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 33456777889999999999999986 246889999888643 345789999999999999988 899999
Q ss_pred eccC-----------ccceeeeec--CcccceeecCcEEEEeeCC-eEEEEeccCC--cEEEEE-----EccccEEEEcC
Q 002493 415 FSKN-----------FQEKRSVRP--TFSAERIYGGTLLAMCSND-FICFYDWAEC--RLIRRI-----DVTVKNLYWAD 473 (915)
Q Consensus 415 ~~~~-----------~~~~~~~~~--~~s~~~i~~g~~La~~~~~-~v~~~d~~~~--~~i~~~-----~~~i~~v~~s~ 473 (915)
|... .+.+..+.+ .++|+ +.++++++.| +|.+|..... +.+.++ ...|+.++|.+
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 9743 223333433 88998 8889999999 9999998877 444332 24788888775
Q ss_pred -----CCCEEEEEeCCeEEEEE
Q 002493 474 -----SGDLVAIASDTSFYILK 490 (915)
Q Consensus 474 -----dg~~la~~~~~~~~~~~ 490 (915)
.+..|+.+-..+-+++|
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred cccccccceEEEEecccEEEEE
Confidence 23366777777766555
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=258.61 Aligned_cols=273 Identities=20% Similarity=0.331 Sum_probs=245.5
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec-C
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-H 98 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~ 98 (915)
-++|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 36788 455788887 45799999999987776666688999999999999999999999999999999999999988 9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc
Q 002493 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (915)
...|-+++|+ +..+.+|+.+|.|..+|++........+.+|...|..+.|++ +++++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 567999999999999999987555556888999999999999 9999999999999999999999999
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEe--CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE--EcCCcEE
Q 002493 179 FTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVR 254 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~v~ 254 (915)
..+..|...|..++|+|-..+ +|++|+ .|+.|++||..++..+..+. ....|.++.|++..+-|+++ ..++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999998766 788875 58999999999999998887 45679999999998766654 4567899
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999999999999999999999999999999999999999984
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.1e-29 Score=228.06 Aligned_cols=279 Identities=25% Similarity=0.367 Sum_probs=234.0
Q ss_pred EEEEEcCC-CCeEEEEE-------cCCcEEEEECCCCceeEEEEe--cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002493 19 KSVDLHPS-EPWILASL-------YSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 19 ~~~~~sp~-~~~la~~~-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~ 87 (915)
.++.|||- .++||++. .+|++.|.++...+-+..+.. -...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 47889993 33455543 378999999865544444432 45679999999965 567888999999999964
Q ss_pred C-CceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCC
Q 002493 88 T-MDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 ~-~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
. ..++..++.|...|.++.|++.. ..++++|.||+|++|+...+ ...+++.+|...|....|+|..+++|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 2 35678889999999999999954 46778899999999999877 667789999999999999999999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCC-CE
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PI 243 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~ 243 (915)
++++||++.......+..|...+.|+.|+..... ++++|+.|+.|+.||+++ ..++..+.+|.-.|..+.|||.. .+
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999887666678999999999999987654 899999999999999997 45788899999999999999965 58
Q ss_pred EEEEEcCCcEEEEeCCCc-ceeeeeecCCccEEEEEEecC-CCEEEEEecCCeEEEec
Q 002493 244 IITGSEDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~-~~~l~~g~~dg~v~i~~ 299 (915)
|++++.|-+++|||...+ ..+.+...|..-+..+.|++- +.++|..+-|+.+.+|.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 899999999999998744 466677788888999999885 67899999999999984
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.4e-28 Score=223.01 Aligned_cols=296 Identities=18% Similarity=0.262 Sum_probs=238.9
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.+.+|+.|++.+.++.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecCCccEEEEEEccCCCCEEEEEEC-----CCcEEEEECC-------CCCCceEEecCCCCeeEEEEEeCCCc
Q 002493 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----DRTIKIWNLG-------SPDPNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
++...+. ...+|..+.|++ ++++++.++. .+.|.++|++ +.+|...+..+...++.+-|.|-++
T Consensus 85 -k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 85 -KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE- 160 (327)
T ss_pred -cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-
Confidence 4444443 457799999999 7777776654 3679999997 4567888888899999999999888
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEE
Q 002493 200 PYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
+|++|..+|.|.+||.++|. .+...+.|...|+.++++|+..++++++.|.+-++||+.+...+.++... .+|.+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 89999999999999999975 55666789999999999999999999999999999999999999988765 7899999
Q ss_pred EecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCce
Q 002493 279 YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQS 358 (915)
Q Consensus 279 ~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 358 (915)
++|....++.|+.....-+-..... .|+. +-+.+. +-- .-++-....|-+++.+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r-------~GKF------EArFyh---------~i~----eEEigrvkGHFGPINs 292 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTR-------AGKF------EARFYH---------LIF----EEEIGRVKGHFGPINS 292 (327)
T ss_pred cccccceEEecCCceeeeeeeeccc-------ccch------hhhHHH---------HHH----HHHhccccccccCcce
Confidence 9999888888776544433110000 0000 000000 000 0011223567778889
Q ss_pred EEECCCCCEEEEEc-CCcEEEE
Q 002493 359 LKHNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 359 l~~s~~g~~lav~~-~~~~~i~ 379 (915)
++|+|+|+..++++ ||.+.+.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 99999998888888 7777765
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=253.01 Aligned_cols=776 Identities=15% Similarity=0.146 Sum_probs=440.6
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCeEEEEEc----CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002493 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 76 (915)
|.+.++.+..+....+.-+-.+|||..+++|+++- .|+|.||- ++|++.+... .+-.+++++|+|..-.|+.|.
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhcc
Confidence 44555555555444444455789999999999864 68999997 6776544332 223367799999999999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE-EEEeecCC--ccE--EEE---
Q 002493 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHS--HYV--MQV--- 148 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~v--~~~--- 148 (915)
.-|.+.+|..++.+.......|+.+|..+.||++|..++++..-|.+.+|........ ...+..|. ..+ .|.
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 9999999999887776667789999999999999999999999999999987621000 00000010 000 001
Q ss_pred -------------------------EE-------------ccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002493 149 -------------------------TF-------------NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 149 -------------------------~~-------------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 190 (915)
-| .| ++..|+.++.+|+|+..|-+ ++.....+.. ..| .
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d-S~v-Q 234 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD-SEV-Q 234 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCC-CcEEEEEEcc-chH-H
Confidence 11 12 46677788888888777642 3322222211 111 1
Q ss_pred EEEEeCCCcCEEEEEeCCCeEEEEEC----------------CC-------------C----cEEEEecCCccCeEEEEE
Q 002493 191 VDYFTGGDKPYLITGSDDHTAKVWDY----------------QT-------------K----SCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~----------------~~-------------~----~~~~~~~~~~~~i~~i~~ 237 (915)
+-|.+... .+++.-.+-++.++-. +. | .....+ .....+.|+++
T Consensus 235 mLf~~~~e--ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY 311 (1416)
T KOG3617|consen 235 MLFMGYCE--AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCY 311 (1416)
T ss_pred HHHhcccc--eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEE
Confidence 11111111 1111111111111110 00 0 000011 13456999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCc-------ceeeeeecC---CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeE
Q 002493 238 HPELPIIITGSEDGTVRIWHATTY-------RLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~---~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~ 307 (915)
+..+..++.|...|.+.+|--.+. .-..+++.. .+.|..+.|.|-.+.+++.+....+.+. +.+..+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~ 388 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTV 388 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHH
Confidence 999999999999999999963321 223334332 4679999999988888887777666652 222211
Q ss_pred ecCCCcE--EEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc
Q 002493 308 MDNSGKI--IWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR 385 (915)
Q Consensus 308 ~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~ 385 (915)
... ++. +....+.+....- ..|..- .-..++.+..++.+. .-|++++...+.+|+.....
T Consensus 389 ~h~-~~~~A~q~ss~S~~L~hc---------~sGv~~------~l~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG 450 (1416)
T KOG3617|consen 389 KHR-GKMAAIQTSSNSFTLLHC---------TSGVSQ------DLKLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSG 450 (1416)
T ss_pred HHh-hhhHHhhhcCCceEEEee---------ccchhh------hhhhccchhhheecc--ceEEEEcCceEEEEEecccc
Confidence 111 010 0111111111111 011100 011233445566555 45888989999999886221
Q ss_pred ccCccc-----eeEEEEecCCcEEEEecCCeEEEeccCccceeeeec-Ccccceee---cCcEEEEeeCC-eEEEEeccC
Q 002493 386 NRSFGS-----ALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWAE 455 (915)
Q Consensus 386 ~~~~~~-----~~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~-~~s~~~i~---~g~~La~~~~~-~v~~~d~~~ 455 (915)
...... +.+.+..--++-+.+.....|.++.........+.. ......+. .|.+|++.+.. .+.-||+..
T Consensus 451 ~la~~~~~tF~cet~~la~~nqN~ycies~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr 530 (1416)
T KOG3617|consen 451 SLATIQCTTFSCETTSLAIVNQNLYCIESDKVFVRTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSR 530 (1416)
T ss_pred hhHHHhhhhhccccchHhHhhcceEEeccCcEEEEecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhh
Confidence 110001 111111112233334444566666544332222221 11111111 46788877766 555556543
Q ss_pred CcE--EEEE---------EccccEEEEcCCCCEEEE--Ee-----CCeEEEEEecHHHHHH--hhhCCCCCCccccccce
Q 002493 456 CRL--IRRI---------DVTVKNLYWADSGDLVAI--AS-----DTSFYILKYNRDVVSA--YLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 456 ~~~--i~~~---------~~~i~~v~~s~dg~~la~--~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f 515 (915)
.++ +... .+.+..+..+.+|.-+.+ +. -+.++.|+|.+..+.. .++++.....++..
T Consensus 531 ~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~t--- 607 (1416)
T KOG3617|consen 531 AELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESST--- 607 (1416)
T ss_pred hcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccccccccC---
Confidence 322 1111 135666777766554322 22 2457788887766543 22221111111110
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEE--CCEEe---EEEecc------cceEEEEEEeeCC-EEEEEe--cCC
Q 002493 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCV--GGEVT---TMFHLD------RPMYLLGYLASQS-RVYLID--KEF 581 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~--~~~~~---~~~~~~------~~~~~~~~~~~~~-~l~~~d--~~~ 581 (915)
.......|+. +..++..+- ..+.. .-..+. ..+.++.++.... .+.+.. ...
T Consensus 608 -------s~pvr~fWD~-------~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~ 673 (1416)
T KOG3617|consen 608 -------SPPVRFFWDE-------NEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKN 673 (1416)
T ss_pred -------CCCceeeecC-------CCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccCC
Confidence 0111233543 222221110 00000 000000 0111111111110 111100 000
Q ss_pred ceEEEEecchHHHHHHHHHccCHHHHhhhc--CCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHH
Q 002493 582 NVMGYTLLLSLIEYKTLVMRGDLERANEIL--PSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQ 659 (915)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~--~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~ 659 (915)
..-.--+...++.|- +.|+.-|+-+.-. +.|+. .-.++.|..+-..+..-+.++++.+.|.+++..|++|.|+
T Consensus 674 ~~~~~Ll~~~VPn~y--fvRk~~~d~ed~~ee~~i~~---~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~Af 748 (1416)
T KOG3617|consen 674 LHCGKLLSVSVPNFY--FVRKSGWDEEDNREERTIGK---TLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAF 748 (1416)
T ss_pred CCccceeeeecCceE--EEecccccccccccccccch---hhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHH
Confidence 000001122223321 1122222111000 11222 2334556666666777778889999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH-HHHHHHHHHHHHcCCchHHHHHHHHcCC
Q 002493 660 EIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA-EGISKLASLAKEQGKNNVAFLCLFMLGK 738 (915)
Q Consensus 660 ~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~g~ 738 (915)
+.++.++++..|..+|.++.+..++++|..|+.++++..++.-+.+...+. +.-.+.|-+|.+.|+...|..+|.++.+
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888876665 5567889999999999999999999999
Q ss_pred HHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhh--------------------------cChhhhhhcCCC
Q 002493 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQK--------------------------VNPKAAESLADP 792 (915)
Q Consensus 739 ~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~--------------------------~~~~~a~~l~~~ 792 (915)
|+---++|...|+|.+|+++|.++-.-++..-.=.+.++|.. -+++.-+++...
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 999999999999999999999887553333333333333321 123344445545
Q ss_pred ccCCCccccHHHHHHHHHHHhhccCCCCCCcccccc
Q 002493 793 EEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNH 828 (915)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 828 (915)
...+.|+..|++.+|..|+++.|..-|..|+||-+.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 567889999999999999999999999999999663
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=244.01 Aligned_cols=285 Identities=18% Similarity=0.300 Sum_probs=242.6
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
+.-.|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++..|.+.|+.+++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999987 6899999999999999999999999999999999999987 6788999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCC
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
++. ...+++.+ .+.+..+.-+..+..+++|+. .|.|||.... .+.+.+.-....|.++.|+|...+.|++|..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 875 46666654 445677777777788898887 5999998766 566666666678999999998889999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEE
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
+|.+||++.+.++..... ...-+.++|+|.+. .+++|+.|..++.||++.. .++....+|.+.|.++.|||.|+-+
T Consensus 211 sIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVIL-TMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceeee-eccccceecCcccc--ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 999999999998877653 34458899999665 5899999999999999874 5678888999999999999999999
Q ss_pred EEEEcCCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 245 ITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
++||.|.+|+||..+.+..-..+. .....|.++.||.|.+++++|++|+.|++|-..
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999988765433322 234679999999999999999999999999543
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.2e-29 Score=248.41 Aligned_cols=288 Identities=21% Similarity=0.363 Sum_probs=236.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~ 82 (915)
..++.+|+..|.++++.|.|-.|++|+.|..|++||+.... ..+.+.. ....|+++.|++.|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678999999999999999999999999999999987542 1222322 345799999999999999999999999
Q ss_pred EEECCCCceeEEE------------ecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEee-----cCCcc
Q 002493 83 VYNYNTMDKVKVF------------EAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHY 144 (915)
Q Consensus 83 vwd~~~~~~~~~~------------~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~ 144 (915)
|+|-...+..... ++|...++|.+|+|.. ..+++++.||++++||+.......+++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997654443322 4788899999999975 4689999999999999987655555544 23456
Q ss_pred EEEEEEccCCCCEEEEEECCCcEEEEECCCCC--Cc-eEEecCCC--CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002493 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PN-FTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+++++|+| ++..|+.|+.||+|.+|+..+.. +. ..-..|.. .|+|+.|+++|+ +|++-+.|+++++||++..
T Consensus 320 ~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence 89999999 89999999999999999985543 22 22346666 899999999998 8999999999999999874
Q ss_pred -cEEEEecCC--ccCeEEEEEeCCCCEEEEEEc------CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 220 -SCVQTLEGH--THNVSAVCFHPELPIIITGSE------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 -~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
+++....+. ..+-+.++|||+.++|++|+. .|.+.+||..+...+..+......|..+.|+|.-+.|.+|+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 455555443 334678899999999999864 46799999999999999998889999999999999999999
Q ss_pred cCCeEEEe
Q 002493 291 DEGTIMVK 298 (915)
Q Consensus 291 ~dg~v~i~ 298 (915)
.||.+.++
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999985
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.3e-29 Score=251.74 Aligned_cols=251 Identities=18% Similarity=0.325 Sum_probs=216.6
Q ss_pred CceeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEE
Q 002493 47 QTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 124 (915)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356778899999999999999 889999999999999999876 889999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002493 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+||.++| .+...+. ....+.|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|.+++. .+++
T Consensus 284 lwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~--rFis 359 (503)
T KOG0282|consen 284 LWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR--RFIS 359 (503)
T ss_pred eeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc--eEee
Confidence 9999999 5555554 3456899999996679999999999999999999999999999999999999999988 6999
Q ss_pred EeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc---eeeeeecCC--ccEEEEE
Q 002493 205 GSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---LENTLNYGL--ERVWAIG 278 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~--~~v~~i~ 278 (915)
.++|+.++||+.+..-++..+. .......++..+|+++++++-+.|+.|.++.+...- ....+.+|. +.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999998877655433 344567789999999999999999999999865321 223344442 4456789
Q ss_pred EecCCCEEEEEecCCeEEEecCC
Q 002493 279 YMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 279 ~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
|||||.+|++|..+|.+.+|..+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred EcCCCCeEEeecCCccEEEeech
Confidence 99999999999999999998433
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4e-28 Score=241.47 Aligned_cols=276 Identities=19% Similarity=0.384 Sum_probs=237.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee----EE-------------E-EecCCCEEEEEEeCCC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA----KS-------------F-EVTELPVRSAKFVARK 69 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~ 69 (915)
.+.+..|.-+|.||+++|+.+++++++.+|+|.-|++.+++.. .. - +.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3456689999999999999999999999999999999887632 11 0 2567789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEE
Q 002493 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 149 (915)
++|++|+.|..|.||+..+++.++.+.+|.+.|.+++|-.....+++++.|..|++|+++.. ....++.+|...|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999988889999999999999999876 66778889999999998
Q ss_pred EccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--
Q 002493 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-- 227 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 227 (915)
... ....+.+|+.|+++++|++. ......+.++.+.+.|++|-.+. .+++|+++|.|.+|++...+++.+...
T Consensus 294 aL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccc
Confidence 876 66777778899999999994 34556778899999999998665 499999999999999998888776532
Q ss_pred ----------CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 228 ----------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 228 ----------~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
+...|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++|+++++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 1237999999999999999999999999998876 3445555 347899999999999888774
No 77
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.8e-29 Score=242.24 Aligned_cols=253 Identities=20% Similarity=0.398 Sum_probs=216.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~ 82 (915)
.+++++++.+|..+|..+.||||.++|++++.+..+.+||..+|.....+.. +...+.+++|.|||..+++|+.|+.|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3677899999999999999999999999999999999999999998877763 467899999999999999999999999
Q ss_pred EEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 83 VYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
.||++. +.....++- ...|.+++.++||+++++.+.|..|++++.++. ...... ....+|++++.+. ++.++++.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~li-se~~~its~~iS~-d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRGLI-SEEQPITSFSISK-DGKLALVN 413 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhccc-cccCceeEEEEcC-CCcEEEEE
Confidence 999874 444444432 346999999999999999999999999998875 333222 3446799999998 88999999
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-CcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC
Q 002493 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 240 (915)
-.+..+++||+...+.+..+.+|..+-..+.-+-.| +..++++|+.|+.|+||+..+|+++..+.||...|.+++|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 999999999999888888888888765555433333 3369999999999999999999999999999999999999996
Q ss_pred CC-EEEEEEcCCcEEEEeCCC
Q 002493 241 LP-IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 241 ~~-~l~~~~~dg~v~iwd~~~ 260 (915)
.+ ++|++|.||+||||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 54 889999999999998653
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=7e-26 Score=240.90 Aligned_cols=388 Identities=16% Similarity=0.244 Sum_probs=296.3
Q ss_pred EEEEEEcCCC--CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002493 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 18 v~~~~~sp~~--~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
|+++ +||.- +.++.|+..|.+.|||+++++.+.+++.+...|+++.-+|-=..+++|..+|+|.++|++.++.+..|
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6665 46643 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 96 EAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
+...+.|+.++|..||+. +++|+..|.+.+||++..+........|.+.|....|.| +...+++++.|..+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 865699999999999975 556666799999999988666666668989999999999 888999999999998885553
Q ss_pred CC----CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE-----------------------------------
Q 002493 175 PD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD----------------------------------- 215 (915)
Q Consensus 175 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd----------------------------------- 215 (915)
+. ..+.-.+|..+..|+.|..... ..+.+++.|++++.++
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 32 2333457888888888873322 1566666666555554
Q ss_pred ------------------------------CCCCcE-EEEec-----CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 216 ------------------------------YQTKSC-VQTLE-----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 216 ------------------------------~~~~~~-~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+++... ...+. .....+++++.++.|++.+.|...|.|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 322211 11111 123568999999999999999999999999999
Q ss_pred Ccceeeee---ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceec
Q 002493 260 TYRLENTL---NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (915)
Q Consensus 260 ~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 336 (915)
+|....++ ..|.++|++++....++.+++++.+|.+.+|.-.... +.. . +
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------l~~--------~---------l 531 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------LKK--------S---------L 531 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----------eee--------e---------e
Confidence 99988888 4788999999999999999999999999997433221 100 0 0
Q ss_pred cCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-C
Q 002493 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-S 409 (915)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~ 409 (915)
++ ...+..+..+.....+|++ .+-.+.+|+....+ ..+...++++.|||||+++++.+ |
T Consensus 532 -----------~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 532 -----------RL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred -----------cc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 00 1123344444444445544 47788999887553 22557899999999999999999 8
Q ss_pred CeEEEeccCccceee--------eecCcccceeecCcEEEEeeCC--eEEEEec
Q 002493 410 SKIKIFSKNFQEKRS--------VRPTFSAERIYGGTLLAMCSND--FICFYDW 453 (915)
Q Consensus 410 ~~v~v~~~~~~~~~~--------~~~~~s~~~i~~g~~La~~~~~--~v~~~d~ 453 (915)
++|++||+....... ....|+|. |.+||+...+ .|++|.-
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPN----GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCC----CCEEEEEEecCceEEEEEc
Confidence 999999965332211 11278898 9999999888 7777754
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.9e-29 Score=238.04 Aligned_cols=228 Identities=27% Similarity=0.495 Sum_probs=205.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|.|+.+ |...+++|..|++|+|||.++..+...+.+|++.|.|+.|. .+.|++|+.|.+|++||++++ .+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-chh
Confidence 3457999988 45679999999999999999999999999999999999996 458999999999999999999 778
Q ss_pred EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002493 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.++.+|...|..+.|+ ++++++++.|.+|.+||+.+...+ ..+.+|...|+.+.|+. + |+++++.|.+|+
T Consensus 271 ~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVsASgDRTik 343 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVSASGDRTIK 343 (499)
T ss_pred hHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEEecCCceEE
Confidence 8888999999999996 579999999999999999876532 35678999999999852 2 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002493 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~d 292 (915)
+|++.++++++++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|..-|.++.| +.+.+++|..|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 9999999999999999999988776 5689999999999999999999999999999999999999 46789999999
Q ss_pred CeEEEec
Q 002493 293 GTIMVKI 299 (915)
Q Consensus 293 g~v~i~~ 299 (915)
|+|++|.
T Consensus 420 GkikvWd 426 (499)
T KOG0281|consen 420 GKIKVWD 426 (499)
T ss_pred ceEEEEe
Confidence 9999984
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=218.69 Aligned_cols=276 Identities=18% Similarity=0.293 Sum_probs=228.6
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE--EecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 002493 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--FEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWD 127 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd 127 (915)
+.+.+|..+|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44567889999999999999999999999999999987755543 45899999999999854 5789999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.+ ++......... =.-+.|+| +++++++++.|..|.+.|.++.+.....+ ....++-++|+.+++ +++....
T Consensus 94 ~r~~-k~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd--~Fflt~G 167 (313)
T KOG1407|consen 94 IRSG-KCTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND--LFFLTNG 167 (313)
T ss_pred eccC-cEEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC--EEEEecC
Confidence 9998 44444333323 34678999 89999999999999999998877655543 455678888985555 6777777
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
.|+|.|..+..-+++.+++.|.....||.|+|+|+++++|+.|..+.+||+...-+++.+....-+|..++|+.+|++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 89999999999999999999999999999999999999999999999999998888999998889999999999999999
Q ss_pred EEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002493 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (915)
+|++|-.|-| +....|..+|. -.++.+-..++|+|...+
T Consensus 248 SaSEDh~IDI---------A~vetGd~~~e--------------------------------I~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 248 SASEDHFIDI---------AEVETGDRVWE--------------------------------IPCEGPTFTVAWHPKRPL 286 (313)
T ss_pred ccCccceEEe---------EecccCCeEEE--------------------------------eeccCCceeEEecCCCce
Confidence 9999998877 22233333332 234445568999999999
Q ss_pred EEEEcC
Q 002493 368 VVVCGD 373 (915)
Q Consensus 368 lav~~~ 373 (915)
||.+.+
T Consensus 287 LAyA~d 292 (313)
T KOG1407|consen 287 LAYACD 292 (313)
T ss_pred eeEEec
Confidence 997763
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.2e-24 Score=216.58 Aligned_cols=413 Identities=17% Similarity=0.337 Sum_probs=298.7
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCce
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--------FIRVYNYNTMDK 91 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--------~i~vwd~~~~~~ 91 (915)
.+-+-|.|..+.... +.+.+|+++.. ..+.+.+|...|.|++.+|+.-.+++|..-| .+++||..+...
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 345667776554432 45667776443 3355778999999999999998898875544 599999888888
Q ss_pred eEEEecCCCCEEEEEEcCC--CCEEEEE--EcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 92 VKVFEAHTDYIRCVAVHPT--LPYVLSS--SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+..+..-...|.|++||+. |.+++.. +.+..+.+||+..+.. .......+..|....|+|.+.+++++++ .|.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKTSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-cCcceeccceEEEEEeccCCCcEEEEeC-CceE
Confidence 8888777778999999984 4455544 3456789999987633 3333445566889999998888888776 5789
Q ss_pred EEEECCCCCCceEE---e-cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002493 168 KIWNLGSPDPNFTL---D-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 168 ~i~d~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
.+|+.+++....+. . ..++.|.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++.-.+|.+
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 99999887655433 1 2236799999999998 999999999999999888877777799999999999999965
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeee--cCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCc
Q 002493 244 IITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
| +|+.|..|..|| .+.+.++... ...+++..++-...+ |.+|+..+.|..- .
T Consensus 302 l-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~G------------------t---- 355 (626)
T KOG2106|consen 302 L-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQG------------------T---- 355 (626)
T ss_pred e-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEe------------------e----
Confidence 5 599999999999 6666554443 345677776644333 7777766655431 0
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee--cccccCccceeEEEEe
Q 002493 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL--AWRNRSFGSALEFVWS 398 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~--~~~~~~~~~~~~~~~s 398 (915)
+.++-.+.. .++ ....-.++.+|+...+++|+ ++.+.+|+-. .|......++.++.|.
T Consensus 356 --------------~~~~f~~~v----~gh-~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 356 --------------LENGFTLTV----QGH-GDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred --------------ecCCceEEE----Eec-ccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 011111100 011 11345788889888888887 9999999722 2445555788999999
Q ss_pred cCCcEEEEec-CCeEEEeccCccceeeee-------c-CcccceeecCcEEEEeeCC-eEEEEecc-CCcEEEEEE----
Q 002493 399 SDGEYAVRES-SSKIKIFSKNFQEKRSVR-------P-TFSAERIYGGTLLAMCSND-FICFYDWA-ECRLIRRID---- 463 (915)
Q Consensus 399 ~~~~~l~~~~-~~~v~v~~~~~~~~~~~~-------~-~~s~~~i~~g~~La~~~~~-~v~~~d~~-~~~~i~~~~---- 463 (915)
|.| .++.+. .|...|.|.+.+...++. . .|+|+ |.+||+++.| .|++|.++ +|....+..
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 999 666555 788888876543332222 1 78898 9999999999 99999986 444444333
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 464 VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|+.+.||+|+++|.+.+-|--+.+|
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEE
Confidence 389999999999999999888766666
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.5e-27 Score=262.54 Aligned_cols=282 Identities=19% Similarity=0.307 Sum_probs=239.9
Q ss_pred cCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCC------------CceeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002493 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQS------------QTMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 78 (915)
++...|.+++.||+|..+|+|+ .||.+.||+.+. .+.+.....|.+.|.|+.|+|||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4456799999999999999999 799999998643 23445566799999999999999999999999
Q ss_pred CeEEEEECCC------------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec
Q 002493 79 MFIRVYNYNT------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 79 g~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+|+..+. ....++.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeec
Confidence 9999998772 1356778899999999999999999999999999999999998 88999999
Q ss_pred CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC------CCCeeEEEEEeCCCcCEEEEEe----CCCe
Q 002493 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGS----DDHT 210 (915)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~----~dg~ 210 (915)
|.+.|..+.|.| -+++|++-+.|++|++|++.+......+..+ ..-+..+.|+|+|+ +|++.. .-.+
T Consensus 170 H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 170 HQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKST 246 (942)
T ss_pred ccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcce
Confidence 999999999999 8999999999999999997765555544332 23467899999998 787753 2357
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCC-----CC------------EEEEEEcCCcEEEEeCCCcceeeee-ecCCc
Q 002493 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LP------------IIITGSEDGTVRIWHATTYRLENTL-NYGLE 272 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~ 272 (915)
+.|.+-.+.+.-..+-+|..++.++.|+|. .+ .+++|+.|++|.||.....+++... +....
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 889998888888889999999999999982 11 6789999999999998777765443 33457
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 273 RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.|..++|+|||..|.+++.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999884
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=232.39 Aligned_cols=279 Identities=19% Similarity=0.281 Sum_probs=248.1
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|+++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46889999998888999999999999999999999999999999999999999999999999999999999887777888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
..|..+|+.+..+|+|.||++++.||+..+.|++++........ ...-.+++.+|+| |+.+|.+|+.||.|++||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 89999999999999999999999999999999999855554433 2334589999999 999999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcE
Q 002493 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v 253 (915)
+.....|.+|.++|..++|+.+|- ||+++++|+.|++||++..+...++... ...+.+++|.+.|.+|+.++.+=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999999999999999998887 8999999999999999987766666533 2369999999999999999887666
Q ss_pred EEEeC--CCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 254 RIWHA--TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 254 ~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
++++- .++..+..+..+.+..+++.|....+++++++.|..+++
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 66663 256778888888888999999999999999999888776
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=231.54 Aligned_cols=279 Identities=25% Similarity=0.350 Sum_probs=231.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
..+.+.|..|+|||++|++|+.||.|.|||+.+|+..+.+ .-+.++|.|+.||.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4567889999999999999999999999999998765443 35788999999999999999999999999999
Q ss_pred CCCCeeEEEEee-cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 128 WEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
+.++ .+.+.+. .|...|+|+.|+. |+..+++++.|.++++.-+.+|+....+.+|...|+...|.++|. .+++++
T Consensus 292 i~tG-~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~--~iisaS 367 (508)
T KOG0275|consen 292 IETG-QCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH--HIISAS 367 (508)
T ss_pred Eecc-hHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC--eEEEec
Confidence 9999 5655554 8999999999999 899999999999999999999999999999999999999999998 799999
Q ss_pred CCCeEEEEECCCCcEEEEecC--CccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecC---CccEEEEEEe
Q 002493 207 DDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYM 280 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~ 280 (915)
.||+|++|+..+.+|+.+++. ...+|.++-.-|.. ..++++...++|.|.++. |+.+.++... .+...+.+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 999999999999999988875 34568888887754 478888888899999976 7888777654 3567788899
Q ss_pred cCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002493 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|.|.++.+.+.|+.++.+.. .+|++- . .+.-++..+-.++
T Consensus 447 pkGewiYcigED~vlYCF~~---------~sG~LE---------------------------~----tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSV---------LSGKLE---------------------------R----TLPVHEKDVIGLT 486 (508)
T ss_pred CCCcEEEEEccCcEEEEEEe---------ecCcee---------------------------e----eeecccccccccc
Confidence 99999999999999887311 111111 0 0122334456788
Q ss_pred ECCCCCEEEEEc-CCcEEEE
Q 002493 361 HNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~ 379 (915)
++|..+.||+.+ ||.+.+|
T Consensus 487 HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cCcccchhhhhcccchhhhc
Confidence 888888888777 6766666
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.3e-28 Score=220.58 Aligned_cols=287 Identities=19% Similarity=0.315 Sum_probs=240.6
Q ss_pred eEEEEecCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002493 50 AKSFEVTELPVRSAKFVA---RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
..+..+|..||..++||| +|-+|++++.||.-.+-+-+||..+.+|.+|.+.|++...+.+-.+-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345678999999999986 78899999999999999999999999999999999999999988888999999999999
Q ss_pred ECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002493 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
|.-++.. ...+ .|.+-|.+++|+. |.+.|++|+.+..+++||++..+ +...+.+|.+.|..+-|+...+ .|++.
T Consensus 87 ~a~tgde-lhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~--~iLSS 161 (334)
T KOG0278|consen 87 DAVTGDE-LHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK--CILSS 161 (334)
T ss_pred hhhhhhh-hhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc--eEEee
Confidence 9988843 3343 3788899999998 89999999999999999998765 5677889999999999998776 68888
Q ss_pred eCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCE
Q 002493 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285 (915)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 285 (915)
..|++|++||.+++..++++. ...+|+++.++++|.+|.++ ..+.|.+||..+..++..+..+ ..|.+.+.+|+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEF 238 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCce
Confidence 999999999999999999998 66789999999999876654 5678999999999999988876 67899999999999
Q ss_pred EEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC
Q 002493 286 IVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG 365 (915)
Q Consensus 286 l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g 365 (915)
+++|+.|+.++.+ +..+|+.+... ...+..+|.++.|+|+|
T Consensus 239 fVaGged~~~~kf------------------------------------Dy~TgeEi~~~---nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 239 FVAGGEDFKVYKF------------------------------------DYNTGEEIGSY---NKGHFGPVHCVRFSPDG 279 (334)
T ss_pred EEecCcceEEEEE------------------------------------eccCCceeeec---ccCCCCceEEEEECCCC
Confidence 9999999887752 12233322210 13455677788888888
Q ss_pred CEEEEEc-CCcEEEEEeec
Q 002493 366 RFVVVCG-DGEYIIYTALA 383 (915)
Q Consensus 366 ~~lav~~-~~~~~i~~~~~ 383 (915)
...|+++ ||.+++|....
T Consensus 280 E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ceeeccCCCceEEEEEecC
Confidence 8877777 77888876543
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.6e-26 Score=250.67 Aligned_cols=265 Identities=18% Similarity=0.252 Sum_probs=208.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee-------------EEEEecCCCEEEEEEeC-CCCEEEEEeCCC
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-------------KSFEVTELPVRSAKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg 79 (915)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3455666777778666677666666667765443221 24678999999999999 889999999999
Q ss_pred eEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEc
Q 002493 80 FIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 80 ~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (915)
+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++|++||+.++ .....+.+|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEE
Confidence 9999999765 3466788999999999999985 68999999999999999988 6667788899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEe----CCCeEEEEECCCCc-EEEEe
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGS----DDHTAKVWDYQTKS-CVQTL 225 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~ 225 (915)
| ++++|++++.|++|++||+++++.+..+..|... +..+.|.+++. .+++++ .|+.|++||+++.. ++...
T Consensus 178 p-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 L-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred C-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 9 8999999999999999999999988888888765 34677887765 455543 47999999998754 44433
Q ss_pred cCC-ccCeEEEEEeCCCCEEEEEE-cCCcEEEEeCCCcceeeeeecC-CccEEEEEEecC
Q 002493 226 EGH-THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKS 282 (915)
Q Consensus 226 ~~~-~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~ 282 (915)
..+ ...+....|++++.+|++++ .||.|++||+.+++........ ..++..++|.|.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 323 33456677899999998887 4999999999988876655442 345667777764
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.6e-27 Score=221.20 Aligned_cols=247 Identities=17% Similarity=0.367 Sum_probs=209.8
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~g~~dg~i~ 82 (915)
+.....+..|.++|++++.+ ++++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.++-. +|++|+.||.|.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 34456678899999999997 89999999999999999999999999999999999999999775 899999999999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
+|+......+..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.++.-...-..+. -..+.|+| .+.+|+.++
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~-~Gd~F~v~~ 187 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSP-QGDHFVVSG 187 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcC-CCCEEEEEe
Confidence 999999999999999999999999999999999999999999999988743333222333 34599999 788888877
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE--eCC
Q 002493 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF--HPE 240 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~--~~~ 240 (915)
.+ .|-+|.+.+......+. ....+.|+.|...+ ++++|++++.|.+||..++.+...+.+|...|.++.+ .|+
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~---~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIE-NPKRILCATFLDGS---ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred cc-EEEEEecccHhHhhhhh-ccccceeeeecCCc---eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCC
Confidence 65 58899987765544443 23456666664333 7999999999999999999999999999999999884 467
Q ss_pred CCEEEEEEcCCcEEEEeCCCc
Q 002493 241 LPIIITGSEDGTVRIWHATTY 261 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~ 261 (915)
+.+|+++|.||.|++||+...
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 789999999999999998765
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-27 Score=245.27 Aligned_cols=282 Identities=21% Similarity=0.373 Sum_probs=246.5
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeE--EEEecCCCEEE-EEEeC-CCCEEEEEeCCC
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK--SFEVTELPVRS-AKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-~~~~~-~~~~l~~g~~dg 79 (915)
..++.+.+.+|..-|+.++..+.. ++++++.||++++|+-..++.+. .+.+|.+-|.+ +++.+ ++-.+++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999987655 78999999999999965554443 45667777766 77775 455699999999
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
+|.+|...+..+..++.+|...|.|+....++. +++||.|.++++|... .+...+.+|+..|+++..-| . +.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~-e-~~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLP-E-NTYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCCcchheeeeeecC-C-CcEE
Confidence 999999999999999999999999999888876 9999999999999865 34566899999999999998 3 3999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002493 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
+|+.|.+|++|.- ++...++.+|...|+.+++-+++. +++++.||.|++|++ +|.++..+.+|..-|.+++..+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999974 778899999999999999998875 999999999999998 6999999999999999999888
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
++..++++++|++++||+.. .+.+.+..+...+|++.+-++|. |++|++||.|++|...
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 88899999999999999965 88888888888999999998876 7789999999997543
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.3e-28 Score=248.50 Aligned_cols=276 Identities=17% Similarity=0.296 Sum_probs=236.4
Q ss_pred EEEEcC-CCCeEEEEEcCCcEEEEECCCCc------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--c
Q 002493 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--D 90 (915)
Q Consensus 20 ~~~~sp-~~~~la~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~--~ 90 (915)
.+..++ .+++|.+|+.||.|++|+..... .+.+++.|...|..+....+|+.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 444444 56679999999999999976432 35677889999999999999999999999999999999876 4
Q ss_pred eeEEEecCCCCEEEEEE-cCCCCEEEEEEcCCeEEEEECCCCee---------EEEEee-cCCccEEEEEEccCCCCEEE
Q 002493 91 KVKVFEAHTDYIRCVAV-HPTLPYVLSSSDDMLIKLWDWEKGWM---------CTQIFE-GHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~-s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~v~~~~~~p~~~~~l~ 159 (915)
+..++..|.++|.|+++ -++...+++|+-|+.|.+||++++.. ....+. ++...|.+++.++ .+..|+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEE
Confidence 67788899999999999 77888999999999999999996621 122233 7888999999999 788999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002493 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
+|+..+.+++||.++.+.+..+.+|...|.++..+++|. .++++++||+|++||+...+|+.++..|...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+-..+.+|+.||.|..=|+++......+-....+|..+..+...+-+-+++.|+.|.-|
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999865444343444667777776555555777888888776
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=5e-27 Score=221.20 Aligned_cols=287 Identities=17% Similarity=0.283 Sum_probs=236.1
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC-----------------C-ceeEEEEecCCCEEEEEEeCCCCE
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-----------------Q-TMAKSFEVTELPVRSAKFVARKQW 71 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~-----------------~-~~~~~~~~~~~~v~~~~~~~~~~~ 71 (915)
.++.|.+++++-+|||||.++|+|+.|..|+|.|++. + ..++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4678999999999999999999999999999999862 1 356677779999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE---eecCCccEE
Q 002493 72 VVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI---FEGHSHYVM 146 (915)
Q Consensus 72 l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~ 146 (915)
|++|+.|++|++||+......+.++ ....+|+++.|+|.|.+|++|..-.++++||+.+- ++... -..|...|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 9999999999999987543322222 23567999999999999999999999999999986 33332 246889999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEE
Q 002493 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 224 (915)
++.+++ .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++ |+++.+.|..+++|.+.+++++..
T Consensus 266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEeecCCcceeeeeeecCCceEEE
Confidence 999999 89999999999999999998888887774 343 4688888988887 999999999999999999999988
Q ss_pred ecCCc-----cCeEEEEEeCCCCEEEEEE-cCCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 225 LEGHT-----HNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 225 ~~~~~-----~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
..+.. .--+...|+....+++.-. ..+.+.-||.++......+. +|.+.+..+.-||.+.-+.++++|-..++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 87531 1123445666666666543 24679999999887655443 57789999999999999999999999999
Q ss_pred ecC
Q 002493 298 KIG 300 (915)
Q Consensus 298 ~~~ 300 (915)
|-.
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 843
No 91
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=216.99 Aligned_cols=270 Identities=18% Similarity=0.290 Sum_probs=217.5
Q ss_pred cCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCC-Ccee-EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002493 13 QRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
...+.|.+++||| ...++++++-||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 555666788899999999987 3332 445568999999999999999999999999999999998
Q ss_pred ceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+..+..|.++|.++.|-+... .|++||.|.+|+.||.+....+ ..+. -...+.++.. -..+++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv-~t~~-LPeRvYa~Dv---~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV-ATLQ-LPERVYAADV---LYPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee-eeee-ccceeeehhc---cCceeEEEecCCcE
Confidence 5667788999999999988665 7999999999999999987333 3332 3355666655 34688999999999
Q ss_pred EEEECCCCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC--cEEEEecCCc---------cCeEE
Q 002493 168 KIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHT---------HNVSA 234 (915)
Q Consensus 168 ~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~i~~ 234 (915)
.+|+++++...+.. ...+-.+.|++...+.++ .+.|+-+|.+.+..+..+ +.-.+|+-|. -.|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999776443221 233456789999998885 699999999999988775 3334444443 24788
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 235 i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
|+|+|....|++.|.||++.+||-.....+.+...+..+|++.+|+.+|.++|-+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999999999999877777888888889999999999999887643
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.5e-27 Score=218.93 Aligned_cols=242 Identities=19% Similarity=0.337 Sum_probs=209.8
Q ss_pred CCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCce
Q 002493 15 SERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 15 ~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.+.+..++|++.. ..+++++.||+++|||... ..++..++.|...|.++.|++ ++..++++|.|++|++|+.+-.+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 5678999999954 5677888899999999543 357778889999999999998 456677889999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+.++.+|...|...+|||. .+.++++|.||++++||++...+ ...+..|...+.++.|+..+.+.+++|+.|+.|+.|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999995 56889999999999999987633 344788999999999999889999999999999999
Q ss_pred ECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEEE
Q 002493 171 NLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIITG 247 (915)
Q Consensus 171 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~ 247 (915)
|+++- .++..+.+|.-.|..+.|+|.... +|++++.|-+++|||...+ ..+.+...|..-+..+.|++ +..+++++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhh-HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 99874 477888999999999999998765 8999999999999998743 45666667787888999998 45689999
Q ss_pred EcCCcEEEEeC
Q 002493 248 SEDGTVRIWHA 258 (915)
Q Consensus 248 ~~dg~v~iwd~ 258 (915)
+.|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 93
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=253.37 Aligned_cols=271 Identities=26% Similarity=0.426 Sum_probs=245.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
|...+.+..|+ ..++++++.+++|++||..++..+.. +.+|.+.|.++++..-+.++++|+.|.+++|||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888998 55799999999999999999998888 9999999999999988899999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEEC
Q 002493 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
..+.+|.+.|.++...+ .++++|+.|.+|++|++.++ .+...+.+|..+|.++..+ ++.+++|+.|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999998764 46888899999999999988 7888888899999999995 789999999999999999
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002493 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
.+++++..+.+|...|.++.+.+. ..+++|+.|+.|++||++++ +++.++.+|..-+..+.+ .+++|++++.||
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999977543 37999999999999999999 999999999888866555 457899999999
Q ss_pred cEEEEeCCCcceeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
.|++||..+++++.++.. +...|..+++. ...+++++.+|.+.+|.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999999999998 56788888876 46789999999999973
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.8e-25 Score=230.27 Aligned_cols=540 Identities=16% Similarity=0.225 Sum_probs=339.7
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceeE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~ 93 (915)
..-..++-+|-..++|.- ....|.+||.+..+.-..+..+..+++|++|+++|+++++|- ....++||++.+...+.
T Consensus 38 ~~~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVA 116 (1080)
T KOG1408|consen 38 KNANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVA 116 (1080)
T ss_pred ecCCcccccccccceeec-cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchh
Confidence 334456667766655442 246799999988888777888889999999999999999985 56789999999988889
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEc--CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
.|..|.-.++|++|+|.++|+++.+. |..|.+||++.+. ...-..-...|..++|+. ++.++++.+ +..|++|.
T Consensus 117 EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~--~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wy 192 (1080)
T KOG1408|consen 117 EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS--SGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWY 192 (1080)
T ss_pred hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc--cccccccceeEEEEEEcc-CCceeeeee-eeeEEEEE
Confidence 99999999999999999999997664 7889999998652 222223456789999998 899999876 57899999
Q ss_pred CCCCCCc-----------------------------------eEEe--cC-----------------CCCeeEEEEEeCC
Q 002493 172 LGSPDPN-----------------------------------FTLD--AH-----------------QKGVNCVDYFTGG 197 (915)
Q Consensus 172 ~~~~~~~-----------------------------------~~~~--~~-----------------~~~v~~~~~~~~~ 197 (915)
+..++.. +.+. +| ...-+|++.+ .
T Consensus 193 l~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~ 270 (1080)
T KOG1408|consen 193 LQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S 270 (1080)
T ss_pred eeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c
Confidence 8654310 0000 00 0112344432 2
Q ss_pred CcCEEEEEeCCCeEEEEECCCCcEEEEec------------------------CCccCeEEEEEeCCCCEEEEEEcCCcE
Q 002493 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLE------------------------GHTHNVSAVCFHPELPIIITGSEDGTV 253 (915)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------~~~~~i~~i~~~~~~~~l~~~~~dg~v 253 (915)
+ +|++|+.+|.|++|+..+-....++. +..-...++.|+|....|.+.-.|..+
T Consensus 271 r--~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 271 R--LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred c--eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 3 89999999999999976643332221 001123467789888899999999999
Q ss_pred EEEeCCCcce---eeeeecCCccEEEEEEecC-----------CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEee
Q 002493 254 RIWHATTYRL---ENTLNYGLERVWAIGYMKS-----------SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (915)
Q Consensus 254 ~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~-----------~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~ 319 (915)
++||++.-+. ...+-+|...||++.--|. ...+++++.||+|++|..... .++.++.
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c------tnn~vyr--- 419 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC------TNNQVYR--- 419 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc------cccceee---
Confidence 9999987553 3345567788888765551 134789999999999953321 0111100
Q ss_pred CceEEEEeeecccceeccCCceee-------eeeee---cCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-
Q 002493 320 NEIQTVNIKSVGADYEVTDGERLP-------LAVKE---LGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR- 387 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~-------~~~~~---~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~- 387 (915)
..+...++..+. ..|++.-. +.-+. .-.....++++++||+|++||.|. .|++.+|++...+..
T Consensus 420 RNils~~l~ki~----y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~ 495 (1080)
T KOG1408|consen 420 RNILSANLSKIP----YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC 495 (1080)
T ss_pred cccchhhhhcCc----cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence 000000000000 01111000 00000 112334678999999999999998 899999998876533
Q ss_pred ----CccceeEEEEecC---CcEEEEec-CCeEEEeccCc--cceee-------eec-CcccceeecCcEEEEeeCCeEE
Q 002493 388 ----SFGSALEFVWSSD---GEYAVRES-SSKIKIFSKNF--QEKRS-------VRP-TFSAERIYGGTLLAMCSNDFIC 449 (915)
Q Consensus 388 ----~~~~~~~~~~s~~---~~~l~~~~-~~~v~v~~~~~--~~~~~-------~~~-~~s~~~i~~g~~La~~~~~~v~ 449 (915)
+-..+.|+-||.. .++|++++ |.-|.|||..- ....+ +.. .|...+ +...+++++.|...
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--ln~~MiscGADksi 573 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--LNRKMISCGADKSI 573 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--CceEEEeccCchhh
Confidence 3467889999832 36788888 77899998431 11111 111 222220 12567777777555
Q ss_pred EEeccC----CcEEEEEE-----ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEe
Q 002493 450 FYDWAE----CRLIRRID-----VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHE 520 (915)
Q Consensus 450 ~~d~~~----~~~i~~~~-----~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 520 (915)
+|+... |.+..+.. ..+..|...|+.+++++++.|+-+++.- +++ ....+.|..-..
T Consensus 574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~--------i~s------gKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD--------IES------GKQVKSFKGSRD 639 (1080)
T ss_pred heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe--------ccc------cceeeeeccccc
Confidence 555543 44333222 3688899999999999999887665531 111 112233333222
Q ss_pred eeeeEEeeEEecC--EEEEEccCCeEEEEE--CCEE-eEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHH
Q 002493 521 TNERVRTGLWVGD--CFIYNNSSWRLNYCV--GGEV-TTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLI 593 (915)
Q Consensus 521 ~~~~i~~~~w~~d--~~i~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~ 593 (915)
-++.......++. ++...-.+..|.++- .++. ..+..+...+-=+.|.++...++-+.-+|-|+.|.+.+..+
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 2223333444442 222222223444332 3333 23333333444456667788888888999999999876443
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-27 Score=246.59 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=221.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|+...+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378899999999999999999999999999999999999998 99999999998 678999999999999999987765
Q ss_pred EE-EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE--CCCcEEE
Q 002493 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKI 169 (915)
Q Consensus 93 ~~-~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i 169 (915)
.. +.+|...|..+.|++++.++++|+.|+.+.|||.... .+...+..|...|..++|+|-..++||+|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 55 7899999999999999999999999999999999665 677788899999999999998889999975 4999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002493 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
||..++..+..+. ....|..+.|++..++.+...|..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999998877765 567899999999987633334567889999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCc
Q 002493 250 DGTVRIWHATTY 261 (915)
Q Consensus 250 dg~v~iwd~~~~ 261 (915)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998764
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=254.14 Aligned_cols=289 Identities=16% Similarity=0.285 Sum_probs=217.0
Q ss_pred hhcc-cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec----------CCCEEEEEEeC-----CCCEE
Q 002493 9 RKLA-QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT----------ELPVRSAKFVA-----RKQWV 72 (915)
Q Consensus 9 ~~l~-~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~-----~~~~l 72 (915)
..+. .|.+.|.+|.||+||+|||+|+.||.|+||.+...+....-.+. .+.+..+.-++ .....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 89999999999999999999999999999998653221100000 00011111111 01111
Q ss_pred EEEeCCCeEEEEECC----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEE
Q 002493 73 VAGADDMFIRVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (915)
-.+.....+ +.+.. ..+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++... .+...|. |...|+|+
T Consensus 340 ~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 340 RKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccCCccc-cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-ceeeEEe-cCCeeEEE
Confidence 122222222 22211 236678889999999999999765 8999999999999999976 7888776 99999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-
Q 002493 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG- 227 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 227 (915)
+|+|.|.++|++|+.||.|++|++...+... ...-..-|++++|.|+|+ +.++|+.+|.+++|+....+....+.-
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc--eEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999999999999999999997755443 344558899999999988 799999999999999987665544321
Q ss_pred -------CccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcceeeeeecCC--ccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 228 -------HTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 228 -------~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
....|+++.|.|... .+++.+.|..|||||.++..++..+++.. ..-...+|+.||++|+++++|..|++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 123799999998554 57778899999999998888888877542 34567889999999999999999999
Q ss_pred ecCCCcc
Q 002493 298 KIGREEP 304 (915)
Q Consensus 298 ~~~~~~~ 304 (915)
|.....+
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9654443
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=5e-26 Score=215.66 Aligned_cols=268 Identities=22% Similarity=0.365 Sum_probs=222.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
..+.|.+|.|+|.+..|++++-||.+++||.....+...+. |..|+.+++|.+ ...+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-e
Confidence 46789999999999999999999999999998887666666 899999999987 45699999999999999998654 4
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (915)
.+..|..+|+||.+++....+++|+.|++|++||.+.. .....+. ....|.++..+ ++.|++|+.+..+.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 55679999999999998889999999999999999864 3333333 33478888874 7899999999999999999
Q ss_pred CCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCCc---------cCeEEEEEe
Q 002493 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHT---------HNVSAVCFH 238 (915)
Q Consensus 174 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~i~~i~~~ 238 (915)
+.....+. ...+..+.|++..|++.+ +++++-||.|.+=.+... +....|+.|. .+|.+++|+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 87654422 234567899999997765 888999999988666544 2334444443 369999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002493 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~ 291 (915)
|-...++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||++++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99899999999999999999999999888888788999999999999999875
No 98
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-23 Score=218.25 Aligned_cols=480 Identities=13% Similarity=0.154 Sum_probs=308.5
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-eEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.-.+.+|++++|+.+.+.||++-.+|.|-+|++..+=. ...+.++ ...|.+++|++ +.+|++.+.+|.|.-||+.+.
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 34567899999999999999999999999999987533 3344444 45799999995 557999999999999999998
Q ss_pred eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
..........+.|++++.+| .+..+++|+.||.+..++...++... .+....+.+.++.|.|++. .+++|+.||
T Consensus 101 -k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg 176 (691)
T KOG2048|consen 101 -KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDG 176 (691)
T ss_pred -ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCc
Confidence 56666777788999999999 88999999999988888876665443 2334568899999999887 599999999
Q ss_pred eEEEEECCCCcEEEEecC--------CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002493 210 TAKVWDYQTKSCVQTLEG--------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
.|++||...+..+..... ...-|+++.|-.++ .|++|..-|+|.+||...+.+++.+..|...|.+++..+
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence 999999998887662211 22347888888665 799999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEE
Q 002493 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 361 (915)
++.++++++.|+.+.-+... .+++- |.. ... ...+.-.++++++
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~--------~~~~~-wv~-------------------------~~~--r~~h~hdvrs~av 299 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLT--------TNKSE-WVI-------------------------NSR--RDLHAHDVRSMAV 299 (691)
T ss_pred CCCeEEEccCCCceEEEEec--------CCccc-eee-------------------------ecc--ccCCcccceeeee
Confidence 99999999999888753111 11110 110 001 1233345677777
Q ss_pred CCCCCEEEEEc-CCcEEEEEeeccccc-----Cccce-eEEEEecCCcEEEEecCCeEEEecc-----------------
Q 002493 362 NPNGRFVVVCG-DGEYIIYTALAWRNR-----SFGSA-LEFVWSSDGEYAVRESSSKIKIFSK----------------- 417 (915)
Q Consensus 362 s~~g~~lav~~-~~~~~i~~~~~~~~~-----~~~~~-~~~~~s~~~~~l~~~~~~~v~v~~~----------------- 417 (915)
.++ .+..++ |..+.+-.....++. ..... .-+..++..++++.-....+.+|.+
T Consensus 300 ~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 300 IEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred ecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheee
Confidence 776 444444 444444332221111 00111 1122233334444444444555542
Q ss_pred Cccceeeeec-CcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE--------ccccEEEEcCCCCEEEEEeCCe--E
Q 002493 418 NFQEKRSVRP-TFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID--------VTVKNLYWADSGDLVAIASDTS--F 486 (915)
Q Consensus 418 ~~~~~~~~~~-~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~--------~~i~~v~~s~dg~~la~~~~~~--~ 486 (915)
..++...+.+ +.+|+ |+++++++-..+++|.++---.+.... ..+..+.|+-|+..+..++.+. +
T Consensus 378 ~~k~~~nIs~~aiSPd----g~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 378 FTKEKENISCAAISPD----GNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred ecCCccceeeeccCCC----CCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 2233333333 78898 999999998889999887532333222 2577788998998888877333 2
Q ss_pred EEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEecccceEEEE
Q 002493 487 YILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLG 566 (915)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 566 (915)
..+....+......+-.....+++....+.. ..+.-+..+.-.+++++|...+..... .+..++..+-...
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~S--sdG~yiaa~~t~g~I~v~nl~~~~~~~-------l~~rln~~vTa~~ 524 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVS--SDGNYIAAISTRGQIFVYNLETLESHL-------LKVRLNIDVTAAA 524 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEc--CCCCEEEEEeccceEEEEEcccceeec-------chhccCcceeeee
Confidence 2333222211111111000011111111100 111222222222344444444222111 1123444455555
Q ss_pred EE-eeCCEEEEEecCCceEEEEecc
Q 002493 567 YL-ASQSRVYLIDKEFNVMGYTLLL 590 (915)
Q Consensus 567 ~~-~~~~~l~~~d~~~~~~~~~l~~ 590 (915)
+. .+-++++..+.++.++.|.+..
T Consensus 525 ~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 525 FSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ccccccCcEEEEecCCeEEEEecch
Confidence 55 4578999999999999999843
No 99
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=233.13 Aligned_cols=239 Identities=22% Similarity=0.322 Sum_probs=208.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+|.+++|+|...+=++....-.+.+|+..+....+.+....+.+.+++|-.||++++.|...|.|+++|..+. ...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HHH
Confidence 3468999999997654333333457999999998888888888889999999999999999999999999996653 677
Q ss_pred EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|+.++..+.|+|.++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..+. ++++|+.||.|++||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEE
Confidence 7888999999999999988999999999999999999998876688999999999999998765 899999999999999
Q ss_pred CCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCC
Q 002493 216 YQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 216 ~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg 293 (915)
++.. ..+.++. |..+|..+.+-|.|..|++++. +.|++||+.+|. .+.....|...|+|+++..++..|.+|+-||
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 9987 6666776 8999999999999999999884 489999998655 4555555889999999999999999999999
Q ss_pred eEEEe
Q 002493 294 TIMVK 298 (915)
Q Consensus 294 ~v~i~ 298 (915)
.+.++
T Consensus 261 ~VKVf 265 (487)
T KOG0310|consen 261 HVKVF 265 (487)
T ss_pred ceEEE
Confidence 99985
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.6e-25 Score=209.37 Aligned_cols=247 Identities=19% Similarity=0.253 Sum_probs=211.3
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc--CCeEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~i 125 (915)
+..+.+....+.|.++.|+++|..+++++.|..+++||..+++.++++..+.-.+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344556666789999999999999999999999999999999999999988888999999887777777776 889999
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002493 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.++.++ +..+.+.+|...|.+++.+| .++.|++++.|++|++||++..++...+..... ..++|.|.|- +++++
T Consensus 85 Lsl~dN-kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL--ifA~~ 158 (311)
T KOG1446|consen 85 LSLHDN-KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL--IFALA 158 (311)
T ss_pred EEeecC-ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc--EEEEe
Confidence 999998 88999999999999999999 669999999999999999998887776654433 4678888886 77777
Q ss_pred eCCCeEEEEECCCC--cEEEEec---CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccE---EEE
Q 002493 206 SDDHTAKVWDYQTK--SCVQTLE---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV---WAI 277 (915)
Q Consensus 206 ~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v---~~i 277 (915)
.....|++||++.- .+..++. +.....+.+.|+|||++++.++..+.+++.|.-+|....++..+...- -+.
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 77779999999863 3444443 335678999999999999999999999999999999988887664332 578
Q ss_pred EEecCCCEEEEEecCCeEEEecC
Q 002493 278 GYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 278 ~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
+|+||++++.+|++||++.+|..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999999999843
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.7e-25 Score=197.96 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=228.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC------Cc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QT---------MAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d 78 (915)
.+..|.+++|+|.|.+.|+|+.+.+.+|--+.. +. ..+.-+.|.+.|.|.+|+|+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 466899999999999999999999888875432 11 112334588999999999999999999999
Q ss_pred CeEEEEECCCCce-----eEEEecCCCCEEEEEEcCC----CCEEEEEE-cCCeEEEEECCCCeeEEEEeecCCccEEEE
Q 002493 79 MFIRVYNYNTMDK-----VKVFEAHTDYIRCVAVHPT----LPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 79 g~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (915)
.+|++.-++...+ -..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...+ ...+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence 9999986653322 2456789999999999643 34555554 4667777787777 6778889999988876
Q ss_pred -EEccCCCCEEEEEECCCcEEEEECCCCCCceEEec--C-----CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc
Q 002493 149 -TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--H-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (915)
Q Consensus 149 -~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 220 (915)
.| ++-+|++|+.|.+|++||++-...+.++.. | ...|.+++..|.|. +|++|-.|....+||++.++
T Consensus 190 ysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 190 YSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence 35 578999999999999999988777766532 2 24688899988887 89999999999999999999
Q ss_pred EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002493 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 221 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~ 296 (915)
.++.+..|...|.++.|+|.-.++++++.|..|++-|+... -.+..+..|...+..+.|+|..-.+++.+.|.++.
T Consensus 265 ~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 99999999999999999999999999999999999998632 12345567788899999999999999999999999
Q ss_pred Eec
Q 002493 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
+|.
T Consensus 345 lwa 347 (350)
T KOG0641|consen 345 LWA 347 (350)
T ss_pred Eec
Confidence 984
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=218.34 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=246.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
.+.+.+.|.||.+.|..++.....+.+.+++.|.+-+||.++++.++..+.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002493 84 YNY------NT------------------------------M----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 84 wd~------~~------------------------------~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
|.. .. + -++..+.+|.+.|.+..|...|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 00 0 1345677899999999999999999999999999
Q ss_pred EEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEE
Q 002493 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.+||++++ .+...+.+|....+.++-+| ...++++++.|.+.++||.+.. ..+..|++|...|+++.|..+.+ +
T Consensus 297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---v 371 (481)
T KOG0300|consen 297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---V 371 (481)
T ss_pred eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc---e
Confidence 99999999 88999999999999999999 8899999999999999999743 34567899999999999988765 9
Q ss_pred EEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceee----eeecCCccEEEE
Q 002493 203 ITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAI 277 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i 277 (915)
++|++|.+|++||+++.+ ++.++. ...++..++.+..+++|+.--.+..|++||++..++.. .-++|..-|.|+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 999999999999999865 566776 56789999999999999998888999999987554322 334666678999
Q ss_pred EEecCC--CEEEEEecCCeEEEe
Q 002493 278 GYMKSS--RRIVIGYDEGTIMVK 298 (915)
Q Consensus 278 ~~~~~~--~~l~~g~~dg~v~i~ 298 (915)
+|..+. .-|.+++-|..+.-|
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eccccCcccccccccccceeeee
Confidence 998653 234455555555544
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.4e-27 Score=242.53 Aligned_cols=229 Identities=23% Similarity=0.439 Sum_probs=204.5
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-eEEEEee
Q 002493 67 ARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFE 139 (915)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 139 (915)
|++++|++|+.||.|++|+..... .+..++.|.+.|..+....+++.|+++|.|-+|++|+...+. .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999976432 256778999999999999999999999999999999988663 5777889
Q ss_pred cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC--c--------eEEe-cCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002493 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--N--------FTLD-AHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.|..+|.|+++...+..++++|+.|+.|.+||++++.. + ..+. ++..+|.+++.++.+. .+++|+..
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EEEecCcc
Confidence 99999999999444889999999999999999987632 1 1122 6778899999988886 79999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEE
Q 002493 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
+.+++||.++++.+..+++|...|..+..++||..++++|+||+|++||+...+++.++..|...||++..+|+-..+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEE
Q 002493 289 GYDEGTIMV 297 (915)
Q Consensus 289 g~~dg~v~i 297 (915)
|+.||.|+.
T Consensus 273 G~rd~~i~~ 281 (735)
T KOG0308|consen 273 GGRDGNIYR 281 (735)
T ss_pred cCCCCcEEe
Confidence 999999887
No 104
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=7.3e-25 Score=240.77 Aligned_cols=245 Identities=16% Similarity=0.267 Sum_probs=192.3
Q ss_pred EEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEEecCCCCEE
Q 002493 33 SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD--------KVKVFEAHTDYIR 103 (915)
Q Consensus 33 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~ 103 (915)
|+..|.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 344678999998887788889999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEEcCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe
Q 002493 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (915)
Q Consensus 104 ~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 182 (915)
+++|+|++..+ ++++.|++|++||++++. ....+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999998764 688999999999999884 333443 567899999999 89999999999999999999999888899
Q ss_pred cCCCCeeEEEEE-----eCCCcCEEEEEeCCC----eEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcC
Q 002493 183 AHQKGVNCVDYF-----TGGDKPYLITGSDDH----TAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 183 ~~~~~v~~~~~~-----~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
+|.+.+.+..+. +++. +|++++.++ .|+|||+++ ++++..+.. +.+.+......++|.++++|+.|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 998876544432 4444 788877664 799999995 556655432 23333334445568899999999
Q ss_pred CcEEEEeCCCcceeeeeec--CCccEEEEEEecCC
Q 002493 251 GTVRIWHATTYRLENTLNY--GLERVWAIGYMKSS 283 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~ 283 (915)
+.|++|++..+.. ..+.. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987642 22221 34667888998864
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-22 Score=215.46 Aligned_cols=277 Identities=19% Similarity=0.275 Sum_probs=234.6
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002493 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
-.|...-+.++|.|+|.+|.+++.||.|++|+..+. +...++..+...|.+++- .+.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 469999999999999999999999999999997766 444555546677777765 45589999999999999999988
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.-..+....-++++++|+.+|++++.||+|-.|++.+.... .....+.+|..+|.++.|+| .+++|++.+.||.|++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEE
Confidence 77777777789999999999999999999999999999887 66788899999999999999 89999999999999999
Q ss_pred ECCCCCCceEEecC--------CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--CccCeEEEEEeCC
Q 002493 171 NLGSPDPNFTLDAH--------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPE 240 (915)
Q Consensus 171 d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~ 240 (915)
|+.++....++.+- ...+..++|+|++. .+++.+.|+.|++|+..++.....+.. +...++.+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCC--eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 99988766655321 34567889999976 588888999999999998888777754 3445899999999
Q ss_pred CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
|+|||+++.||.|.|||+.+... ......|.+++|.|+.+.+-.-...|..-++
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999987222 3334689999999999988877777766654
No 106
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.9e-25 Score=242.53 Aligned_cols=227 Identities=14% Similarity=0.225 Sum_probs=184.9
Q ss_pred hcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002493 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~ 80 (915)
.+.+|++.|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8889999999999999999765 3466788999999999999985 68999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCcc-EEEEEEccCCCCEEE
Q 002493 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~ 159 (915)
|+|||+.+++.+..+..|.+.|.+++|+|++.+|++++.||.|++||++++ .....+.+|.+. +..+.|.+ +++.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~-~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAK-RKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcC-CCCeEE
Confidence 999999999999999999999999999999999999999999999999988 456667778654 45678888 555666
Q ss_pred EEE----CCCcEEEEECCCCCCc-eEEecC-CCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCCCcEEEEecC-CccC
Q 002493 160 SAS----LDRTIKIWNLGSPDPN-FTLDAH-QKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG-HTHN 231 (915)
Q Consensus 160 ~~~----~dg~i~i~d~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~ 231 (915)
+++ .|++|++||+++.... .....+ ...+....|+++++ ++++++ .|+.|++||+.+++.+..... +..+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 543 4789999999876533 333322 23455566777776 677766 599999999999887665543 3446
Q ss_pred eEEEEEeCC
Q 002493 232 VSAVCFHPE 240 (915)
Q Consensus 232 i~~i~~~~~ 240 (915)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 778888885
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=245.44 Aligned_cols=247 Identities=27% Similarity=0.460 Sum_probs=224.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
...+.||.+.|.++++..-+..|++|+.|.+++|||..+|.+..++.+|...|.++... +..+++|+.|.+|++|++.
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 34589999999999999888899999999999999999999999999999999998764 4568888999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
++..+..+.+|.++|+++..+ ++++++|+.||+|++||+.++ ++...+.+|...|.++.+.+ . +.+++|+.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecC-c-ceEEeeeeccce
Confidence 999999999999999999998 789999999999999999988 89999999999999998865 2 899999999999
Q ss_pred EEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-CccCeEEEEEeCCCCEEE
Q 002493 168 KIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIII 245 (915)
Q Consensus 168 ~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~ 245 (915)
++||+.+. +++.++..|...+..+.+. ++ +|++++.|++|++||..+++++.++.+ |...|+.+++. ...++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLLR--DN--FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEIL 468 (537)
T ss_pred EeecCCchhhhhhhhcCCcccccccccc--cc--eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEE
Confidence 99999999 8999999999888766653 33 799999999999999999999999998 67888888876 35788
Q ss_pred EEEcCCcEEEEeCCCcceeeee
Q 002493 246 TGSEDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~ 267 (915)
+++.||.+++||+.++.+...+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 9999999999999999987766
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-25 Score=246.20 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=236.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC
Q 002493 56 TELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNT------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~--~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 121 (915)
+...|.++..+|+|..+++|+ .||.++||+.+. .+.+..+..|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345789999999999999999 799999998642 233556678999999999999999999999999
Q ss_pred eEEEEECCC-----------------CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC
Q 002493 122 LIKLWDWEK-----------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 122 ~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 184 (915)
.|.||.... .+++..++.+|...|..++|+| ++.+|++++.|++|.+|+..+.+.+.++.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999998772 1567788999999999999999 9999999999999999999999999999999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc------cCeEEEEEeCCCCEEEEEE----cCCcEE
Q 002493 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------HNVSAVCFHPELPIIITGS----EDGTVR 254 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~i~~~~~~~~l~~~~----~dg~v~ 254 (915)
...|..+.|.|-|+ ||++-++|++|++|++.+....+.+..+. .-+..+.|||||.+|++.. .-.++.
T Consensus 171 ~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999998 99999999999999988777777665443 3477899999999999853 234689
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecC-----CC------------EEEEEecCCeEEEecCCC-cceeEecCCCcEEE
Q 002493 255 IWHATTYRLENTLNYGLERVWAIGYMKS-----SR------------RIVIGYDEGTIMVKIGRE-EPVASMDNSGKIIW 316 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~------------~l~~g~~dg~v~i~~~~~-~~~~~~~~~g~~~~ 316 (915)
|.+-.+++.-..+-+|..++.++.|+|. .+ .+|+|+.|+++.||.... +|++...
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------- 321 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------- 321 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------
Confidence 9998888988999999999999999983 11 678899999999995432 2222111
Q ss_pred EeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002493 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 317 ~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
.-....|..++|+|||..|.+|+ ||.+.++...
T Consensus 322 ---------------------------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 322 ---------------------------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ---------------------------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 01122456899999999999888 9999988543
No 109
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=8.4e-26 Score=219.36 Aligned_cols=249 Identities=22% Similarity=0.367 Sum_probs=212.8
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCce----eEEEEecCCCEEEEEEeCCCCEEEEEeC
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTM----AKSFEVTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~g~~ 77 (915)
.+..+++.||+++|.+++|....+ .+++++.|.++++|.++.+.. ++.-.+|..+|.++...++|..+++|+.
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence 456678899999999999876444 499999999999999887743 2334589999999999999999999999
Q ss_pred CCeEEEEECC-------------------------CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe
Q 002493 78 DMFIRVYNYN-------------------------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 78 dg~i~vwd~~-------------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
|.+|.+|+.. ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 9999999931 1234567789999999999998 5679999999999999999984
Q ss_pred eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
....+. .+..+.++..+| ..++|++|+.|..|++||.+++. ..+++.+|..-|.++.|+|.... .|++|+.|+
T Consensus 293 -~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D~ 368 (423)
T KOG0313|consen 293 -LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYDN 368 (423)
T ss_pred -ceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecCC
Confidence 444433 346689999999 89999999999999999998764 34678899999999999998764 899999999
Q ss_pred eEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 210 TAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 210 ~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
++++||+++.+ ++..+.+|...|.++.|... ..|++||.|.+|+|+...
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 99999999877 99999999999999999864 589999999999998743
No 110
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.1e-23 Score=219.74 Aligned_cols=425 Identities=14% Similarity=0.228 Sum_probs=282.9
Q ss_pred EEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCc--eeEEE
Q 002493 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTMD--KVKVF 95 (915)
Q Consensus 21 ~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~g~~dg~i~vwd~~~~~--~~~~~ 95 (915)
.+|.|.+ .+|.|. ...|.+||..+......+.+|..+|+|+.|-|..+ .+++|+.|+.|.+|.+.... ++..+
T Consensus 20 ~sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~ 97 (764)
T KOG1063|consen 20 SSWGPGG-LVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI 97 (764)
T ss_pred ccccccc-eEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee
Confidence 4555544 455554 67899999877777888999999999999999887 89999999999999987433 34455
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-eEEEEeecCC--ccEEEEEEccC-CCCEEEEEECCCcEEEEE
Q 002493 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHS--HYVMQVTFNPK-DTNTFASASLDRTIKIWN 171 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~--~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d 171 (915)
.+|... +++++.......+.+.|+.+.+||..... .+...+.-.. ....|+++.|. +.-.+++|+.+..|.++.
T Consensus 98 ~g~~~~--~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHCKE--CVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCccee--EEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 565544 45555433333333789999999985442 1222222222 22345555552 333456677777777776
Q ss_pred CCCC--CCceEEecCCCCeeEEEEEeCCC-cCEEEEEeCCCeEEEEECCCCc---------------------EEEE---
Q 002493 172 LGSP--DPNFTLDAHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKS---------------------CVQT--- 224 (915)
Q Consensus 172 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~---------------------~~~~--- 224 (915)
-... +....+.+|...|.+++|...+. ..++++++.|..|+||.+.-+. ....
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5433 34567789999999999988765 6688899999999999864322 1111
Q ss_pred -------ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc--ceee-----eeecCCccEEEEEEecCCCEEEEEe
Q 002493 225 -------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLEN-----TLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 225 -------~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~-----~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
+.+|.+.|.++.|+|.+..|++++.|.++.+|..... --+. ...+.....+...|+|+++.+++-+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence 2489999999999999999999999999999976543 2222 2223345689999999999999999
Q ss_pred cCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002493 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
..|..++|-..+....... .-+..+...++.+.|+|.|.||.+
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~-------------------------------------~~iSGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQE-------------------------------------PVISGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred ccCcEEEEeccCccceeec-------------------------------------cccccccccceeeeecCCCCEEEE
Confidence 9999999852221111110 012445556778888888887776
Q ss_pred Ec-CCcEEEEEee----cc----c-ccCccceeEEEEec-CCcEEEEecCCeEEEeccC---------------------
Q 002493 371 CG-DGEYIIYTAL----AW----R-NRSFGSALEFVWSS-DGEYAVRESSSKIKIFSKN--------------------- 418 (915)
Q Consensus 371 ~~-~~~~~i~~~~----~~----~-~~~~~~~~~~~~s~-~~~~l~~~~~~~v~v~~~~--------------------- 418 (915)
.+ |.+.++|..- .| | ..+....+|+++-+ +-+++-.+....+++|+..
T Consensus 379 vs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 379 VSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred eccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 66 6666666332 11 1 11223446666665 3333333334556666510
Q ss_pred ----------------c----------------------------------------cce--------eeeecCccccee
Q 002493 419 ----------------F----------------------------------------QEK--------RSVRPTFSAERI 434 (915)
Q Consensus 419 ----------------~----------------------------------------~~~--------~~~~~~~s~~~i 434 (915)
+ ++. .....+.+|+
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~-- 536 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT-- 536 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC--
Confidence 0 000 0000022222
Q ss_pred ecCcEEEEeeCC------eEEEEeccCCcEEEEEE---ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002493 435 YGGTLLAMCSND------FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 435 ~~g~~La~~~~~------~v~~~d~~~~~~i~~~~---~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
|+++|++... .|++|+..+...+..+. -.|+.++|||||++|++++.|+..-+|
T Consensus 537 --gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 537 --GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred --CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 7788876543 79999998887776665 389999999999999999999999776
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=226.64 Aligned_cols=285 Identities=17% Similarity=0.251 Sum_probs=231.8
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
....+..|.+.|..+.|-++...|++|+.|..|.+|+....+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 334566799999999999999999999999999999987666 567777888899999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
++... ....++.+|...|+++.|.. ....+++|+.|.+|+.||+....+..++. ....++.|+.+ .. .+++|.
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~--~~~SgH 319 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS--DVISGH 319 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce--eeeecc
Confidence 99988 77888999999999999987 55559999999999999998877666554 23444555554 22 588999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC----ccEEEEEEecC
Q 002493 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIGYMKS 282 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~ 282 (915)
.|++|++||.++..+......+. .|+++..+++|..|++++.|.++.+.|+++......+.... ...+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999999988665 89999999999999999999999999999988877776432 34788999999
Q ss_pred CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002493 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
+.++++|+.||.|+||......+... .+ ..++...+.+++|+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~-------------------------------------l~-~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKV-------------------------------------LS-LSTSNAAITSLSWN 440 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEE-------------------------------------ec-cCCCCcceEEEEEc
Confidence 99999999999999984322211110 00 12222256788888
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002493 363 PNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (915)
|.|+.|+.++ ++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 8888888777 5555555
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=222.91 Aligned_cols=287 Identities=15% Similarity=0.253 Sum_probs=232.4
Q ss_pred eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 49 MAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+...+.+|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678899999999999987 7899999999999999999999999999999999999987 5689999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.. ...++.+. +.+..+.-+. .++.|++++. .|.|||..-..|+..+......|.++.|+|.... +|+++++
T Consensus 136 ~~~~--p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas~~s 208 (433)
T KOG0268|consen 136 IDGP--PLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILASCAS 208 (433)
T ss_pred ccCC--cceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch-heeeecc
Confidence 8874 44444432 3456666555 6778888874 5899999999999999988999999999998775 7888889
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l 286 (915)
|+.|.+||++++.+++.+. ....-..|+|+|.+-.+++|++|..++.||++... ++.....|.+.|.++.|||.|+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999887765 33456789999988889999999999999998654 677788888999999999999999
Q ss_pred EEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002493 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (915)
Q Consensus 287 ~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (915)
++|+-|.+|+|+-.+......+... + .-..+.++.||.|.+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYht----------------------------k-----------RMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHT----------------------------K-----------RMQHVFCVKYSMDSK 328 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhH----------------------------h-----------hhheeeEEEEecccc
Confidence 9999999999953322211111000 0 001345788888888
Q ss_pred EEEEEc-CCcEEEEEeecc
Q 002493 367 FVVVCG-DGEYIIYTALAW 384 (915)
Q Consensus 367 ~lav~~-~~~~~i~~~~~~ 384 (915)
++.+|+ ++++.+|....+
T Consensus 329 yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEecCCCcceeeeecchh
Confidence 888887 678888866554
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.8e-25 Score=219.62 Aligned_cols=244 Identities=21% Similarity=0.329 Sum_probs=211.2
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee----EE-------------E-ecCCCCEEEEEEcCCC
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV----KV-------------F-EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----~~-------------~-~~~~~~i~~l~~s~~~ 111 (915)
...+..|..+|.+++++|+.++.++++.+|+|.-|+..+++.. .. - +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556679999999999999999999999999999999887643 11 0 2677889999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002493 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
+||++|+.|..|.||+.++. ...+.+.+|.+.|.+++|-. ..+.+++++.|++|++|++.....+.++.+|+..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999998 67778999999999999987 78899999999999999999988888999999999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-
Q 002493 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
....... .+.+|+.|+++++|++. -.....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+++.+....
T Consensus 293 daL~reR--~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRER--CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcccc--eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 8876555 67778899999999995 4444567788889999999876 57999999999999999888877654421
Q ss_pred -----------CccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 271 -----------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 271 -----------~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
...|++++..|...++|+|+.+|.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12688999999999999999999999984
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=215.10 Aligned_cols=235 Identities=19% Similarity=0.321 Sum_probs=211.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (915)
.+.++..+|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|++|..... ......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccc
Confidence 5788888888889999999999999999999999999999999999999999999999999999999998876 566777
Q ss_pred ecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 139 EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 139 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
..|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|+|+|. ++.+|..||.|+|||+
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEc
Confidence 88999999999999 999999999999999999999987766553 334589999999997 8999999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeE
Q 002493 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~g~~dg~v 295 (915)
.++..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.... ..+.+++|.+.|++|++++.+=.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999999999999999999999999999999999999999888777766543 369999999999999999766555
Q ss_pred EE
Q 002493 296 MV 297 (915)
Q Consensus 296 ~i 297 (915)
++
T Consensus 457 y~ 458 (506)
T KOG0289|consen 457 YI 458 (506)
T ss_pred EE
Confidence 54
No 115
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.2e-23 Score=231.16 Aligned_cols=223 Identities=16% Similarity=0.226 Sum_probs=181.4
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCee-------EEEEeecCCccEE
Q 002493 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVM 146 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~ 146 (915)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998877788889999999999999997 78999999999999999986421 2345778999999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002493 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+++|+|.....+++++.|++|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|++||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999444566899999999999999988776665 567899999999988 78989999999999999999999999
Q ss_pred CCccCeEEE-----EEeCCCCEEEEEEcCC----cEEEEeCCC-cceeeeeec--CCccEEEEEEecCCCEEEEEecCCe
Q 002493 227 GHTHNVSAV-----CFHPELPIIITGSEDG----TVRIWHATT-YRLENTLNY--GLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 227 ~~~~~i~~i-----~~~~~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~i~~~~~~~~l~~g~~dg~ 294 (915)
+|.+.+.+. .|++++.+|++++.++ .|+|||+++ .+++..+.. +.+.+......+++.++++|..|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 998765432 3458889999988774 799999985 455554433 2333444444556889999999999
Q ss_pred EEEecC
Q 002493 295 IMVKIG 300 (915)
Q Consensus 295 v~i~~~ 300 (915)
|++|..
T Consensus 287 Ir~~e~ 292 (568)
T PTZ00420 287 CRYYQH 292 (568)
T ss_pred EEEEEc
Confidence 999753
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=9.7e-25 Score=219.66 Aligned_cols=238 Identities=16% Similarity=0.287 Sum_probs=188.6
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002493 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
..+++|...|.++++.|.|..|++|+.|..|++||+..+.. .+.+ ......|+++.|+++|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 34667888999999999999999999999999999975432 2222 234557999999999999999999999999
Q ss_pred EECCCCeeEEEE------------eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCce-EEe-----cCCCC
Q 002493 126 WDWEKGWMCTQI------------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-TLD-----AHQKG 187 (915)
Q Consensus 126 wd~~~~~~~~~~------------~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~-----~~~~~ 187 (915)
+|-+.. .+... ..+|...++|.+|+|...+.|++++.||++++||+...+... .+. +..-+
T Consensus 241 ~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 997654 33332 357889999999999888999999999999999998765432 222 33456
Q ss_pred eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc---EEEEecCCcc--CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc
Q 002493 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++|++++. +|++|+.||.|.+|+..... ....-..|.. .|++|.||++|++|++-+.|+++++||+++.+
T Consensus 320 ~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 88999999998 79999999999999986432 1233345655 89999999999999999999999999998765
Q ss_pred -eeeeeec--CCccEEEEEEecCCCEEEEEec
Q 002493 263 -LENTLNY--GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 263 -~~~~~~~--~~~~v~~i~~~~~~~~l~~g~~ 291 (915)
++.+... ..-+-+.++|||+.++|++|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 3333221 1234568999999999999875
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.5e-24 Score=202.99 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=210.9
Q ss_pred ecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-Ccee-EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 55 VTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 55 ~~~~~v~~~~~~~-~~~~l~~g~~dg~i~vwd~~~-~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..+..|.+++||| ....+++||.||+||+|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 455666889999999999986 3333 344579999999999999999999999999999999998
Q ss_pred eeEEEEeecCCccEEEEEEccCCCC--EEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 132 WMCTQIFEGHSHYVMQVTFNPKDTN--TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 132 ~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
....+..|..+|.++.|-+ ..+ .|++||.|++|++||.++..++.++.- ...+.++.. ..++++++..++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv----~~pm~vVata~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV----LYPMAVVATAER 176 (347)
T ss_pred --CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc----cCceeEEEecCC
Confidence 4455677999999999987 444 899999999999999999998888763 445555543 445899999999
Q ss_pred eEEEEECCCCcEEEEe--cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc--ceeeeeecCC---------ccEEE
Q 002493 210 TAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGL---------ERVWA 276 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~---------~~v~~ 276 (915)
.|.+|+++++...... ....-.+.+++..++....+.|+-+|.+.|..+..+ +.-.+++.|. -.|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 9999999876432211 113345889999999888899999999999988776 2223333332 25788
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002493 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|+|....|++.+.||++.+|..... ..++....+..++
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar----------------------------------------~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDAR----------------------------------------TKLKTSETHPQPI 296 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhh----------------------------------------hhhhccCcCCCcc
Confidence 999999999999999999999742221 1122235566788
Q ss_pred ceEEECCCCCEEEEEc
Q 002493 357 QSLKHNPNGRFVVVCG 372 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~ 372 (915)
++..|+.+|.++|.+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 8999999999887653
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=5.2e-25 Score=207.67 Aligned_cols=289 Identities=19% Similarity=0.335 Sum_probs=219.6
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------------C------ceeEEEecCCCCEEEEEEcCCC
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT------------M------DKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~------------~------~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
...+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++..|.+.|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999851 1 1356777899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEe--ecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE---ecCCC
Q 002493 112 PYVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQK 186 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~ 186 (915)
..|++|+.|++|+++|.... ...+.+ .....+|.++.|+| .+.++++|....++++||+++-++...- ..|.+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred heEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999998754 222111 12346799999999 9999999999999999999886654332 46888
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-Cc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002493 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
.|+++.+++.++ +.++++.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.+.|..+++|.+.+++++
T Consensus 263 ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 263 AITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ceeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 999999999988 899999999999999988999888853 43 46899999999999999999999999999999998
Q ss_pred eeeecCC--cc---EEEEEEecCCCEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccC
Q 002493 265 NTLNYGL--ER---VWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTD 338 (915)
Q Consensus 265 ~~~~~~~--~~---v~~i~~~~~~~~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 338 (915)
..+.+.. ++ -+...|+....++..-.+ .+.+.- |+..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs------------------------------------WdaRt 384 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS------------------------------------WDART 384 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceee------------------------------------ccccc
Confidence 8776541 11 112233333333322111 111111 22333
Q ss_pred CceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002493 339 GERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 339 g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
+.++.+- .-.+...++.+.+||.+.-+.+|+ |-...+|..
T Consensus 385 adr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 385 ADRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhc---ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3333211 135667889999999999888888 667888854
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=215.89 Aligned_cols=279 Identities=17% Similarity=0.305 Sum_probs=229.8
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC--CceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.++|++|.|||..+.|++++.||.++||.+.. ...++++.....||.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998754 345667777788999999999999 899999999999999998765
Q ss_pred eEE--EecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 92 VKV--FEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 92 ~~~--~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+. ..++. ..+....+||++++|++.+..|.|.+....++ .....+. ..+.|..++|+. ++..|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 443 23333 35778899999999999999999999998887 4444443 457799999997 888999999999999
Q ss_pred EEECCCCCCceEEecCCCCee--EEEEEeCCCcCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCeEEEEEeCC
Q 002493 169 IWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~~i~~~~~ 240 (915)
+||++...++.++.. .+.|. +++.++++. |+++|+..|.|.|||..+ .+++..+..-...|+++.|+|+
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc--eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999988877763 44444 455556665 999999999999999653 4577777777888999999999
Q ss_pred CCEEEEEEc--CCcEEEEeCCCcceeeeee---cCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 241 LPIIITGSE--DGTVRIWHATTYRLENTLN---YGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 241 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
.++|+.+|. +..+++-++.+......+. ...+.|+|++|+|.|.++|+|...|.+.+|-
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 999888774 5679999887665554443 3456799999999999999999999999973
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=9.2e-25 Score=218.09 Aligned_cols=246 Identities=24% Similarity=0.405 Sum_probs=206.5
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCc----------eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002493 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT----------MAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~ 80 (915)
.|.+.|..+.+-|..+ .+|+++..+.|.|||+.+.. .-..+.+|...-.+++|++.. -.|++|+.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4888999999999776 45566778999999986532 112677898878889999854 46889999999
Q ss_pred EEEEECCCCc-------eeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCC-CeeEEEEeecCCccEEEEEEc
Q 002493 81 IRVYNYNTMD-------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK-GWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~~~~-------~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~ 151 (915)
|++||++... ....+.+|.+.|..++|++.. ..++++++|+.+.|||.++ ..++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999987533 345678999999999999954 5678999999999999995 235667778999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-----------
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------- 219 (915)
|.++..||+|+.|++|.+||+++. ++..++.+|...|.++.|+|.... +|++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccccccccChhhhcc
Confidence 999999999999999999999875 467788999999999999998765 8999999999999998641
Q ss_pred ---cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCC
Q 002493 220 ---SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ---~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
+.+..-.||...|..+.|+|+.+ .|++.+.|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466678999999999999887 56678899999999976
No 121
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-25 Score=201.46 Aligned_cols=250 Identities=22% Similarity=0.282 Sum_probs=202.2
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEEE-ccCCCCEEEEEECCCcEEEEE
Q 002493 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~i~i~d 171 (915)
...|.+.|..+...--|++|++|+.|++|+|+..+++. .....+.+|.++|..+.| +|+-+++|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34788999988888889999999999999999998764 567788999999999999 677899999999999999999
Q ss_pred CCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-c--EEEEecCCccCeEEEEEeCC---C--
Q 002493 172 LGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-S--CVQTLEGHTHNVSAVCFHPE---L-- 241 (915)
Q Consensus 172 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~--~~~~~~~~~~~i~~i~~~~~---~-- 241 (915)
-.+++- ......|...|++++|.|.+-+..|+++++||.|.+.++++. . .......|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887743 334567999999999999998889999999999999998754 2 23445668889999999996 4
Q ss_pred ---------CEEEEEEcCCcEEEEeCCCc--ceeeeeecCCccEEEEEEecCC----CEEEEEecCCeEEEecCCCccee
Q 002493 242 ---------PIIITGSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMVKIGREEPVA 306 (915)
Q Consensus 242 ---------~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~----~~l~~g~~dg~v~i~~~~~~~~~ 306 (915)
+.|++|+.|+.|+||+..++ .+..++..|.+-|..++|.|.- ..||+++.||.+.||.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--- 243 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--- 243 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc---
Confidence 46999999999999998765 4566789999999999999974 57999999999999743211
Q ss_pred EecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002493 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.-+-..+-+......+-.+.||+.|.+|++++ ++++.+|..
T Consensus 244 ----------------------------------~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 ----------------------------------YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ----------------------------------cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 00000111222334567899999999999887 888888843
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=9e-25 Score=218.82 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=234.4
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.|.+-|.++.+|...+++.+|+ .|.|+|||+... ..+..+.. ....|+++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4999999999999999999998 578999998653 22333332 45679999999999999999999999999997
Q ss_pred CCceeE--EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCC
Q 002493 88 TMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 ~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
+..... .+....-....++.+||.+..++|..||.|.|||+.+. .+++.+.+|...+.|+..++ ++..|.+|+.|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCceeecCCCcc
Confidence 654322 23332345677899999999999999999999999987 88889999999999999999 999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEE
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 245 (915)
+|+.||++.+....... ....|.++.++|.++ ++++|-.++.+.+.... +.....+..|...|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d--WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD--WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCcc--ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence 99999999987665543 457789999999988 89999999999998865 555566777899999999999999999
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+.+.|+.+..|...-|..+...+.. ..|.++..|.|.++|++|+.|..-.+
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred ecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEE
Confidence 9999999999998877777666544 78999999999999999999876655
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.1e-24 Score=199.08 Aligned_cols=252 Identities=19% Similarity=0.251 Sum_probs=210.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~ 82 (915)
.+.-++|.+.|..+...--|++||+++.|++|+|+..++. +++.++.+|.+||..++|.. -|..||+++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3456789999999999999999999999999999998764 46778999999999999976 799999999999999
Q ss_pred EEECCCCcee--EEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCC--CeeEEEEeecCCccEEEEEEccCC--
Q 002493 83 VYNYNTMDKV--KVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEK--GWMCTQIFEGHSHYVMQVTFNPKD-- 154 (915)
Q Consensus 83 vwd~~~~~~~--~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~p~~-- 154 (915)
||...+++.. .....|...|++++|-|. |-.|++++.||.|.|.+.++ ++....+...|.-.|.+++|.|..
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9998887543 345689999999999985 56789999999999998874 455666778899999999999831
Q ss_pred C-----------CEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCC--CcCEEEEEeCCCeEEEEECCCC
Q 002493 155 T-----------NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGG--DKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 155 ~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+ ..|++|+.|..|+||+..++. ...++.+|..-|+.++|.|.- ...+|++++.||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 469999999999999998763 234578999999999999974 2347999999999999987631
Q ss_pred c---EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 220 S---CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
. ....+......+..+.||+.|++|++++.|+.|.+|.-.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122334456789999999999999999999999999743
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.1e-23 Score=185.46 Aligned_cols=245 Identities=19% Similarity=0.303 Sum_probs=206.8
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce-----eEEEEecCCCEEEEEEeCC----CCEEEEEeC-CC
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM-----AKSFEVTELPVRSAKFVAR----KQWVVAGAD-DM 79 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~g~~-dg 79 (915)
.-+.|.+.|.|.+|||+|.+||+|+.|..|++.-++.... -..+..|++.|+.++|-.+ +..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 4467999999999999999999999999999986654322 2457789999999999653 456776654 77
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec-------CCccEEEEEEcc
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p 152 (915)
.|++-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-. .+..++.. ..+.|.+++..|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECC
Confidence 888889999999999999999998763 335778999999999999999876 45554432 136789999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCC
Q 002493 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGH 228 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 228 (915)
.+.+|++|..|.+..+||++.+.+++.+..|...|.|+.|+|... |+++++.|..|++-|++.. -++.....|
T Consensus 242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce--EEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999999999999999999999999999999887 9999999999999998742 134455668
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 229 THNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8889999999998889999999999999754
No 125
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.8e-24 Score=200.60 Aligned_cols=246 Identities=19% Similarity=0.327 Sum_probs=216.0
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+++.+.+|...|..++-......+.+++.|.+-+||.++++.++..+.+|.+.|.+++|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667889999999999888888888999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCCC---------------------------------eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 128 ------WEKG---------------------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 128 ------~~~~---------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+... +.+...+.+|...|.++.|.. ++..+++++.|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 1110 234456778999999999998 899999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002493 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 247 (915)
+||+.++.++..+.+|....+.++-+|... ++++.+.|.+.++||++.. ..+..|++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcce--EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999998888765 8999999999999999853 3577899999999999999875 68899
Q ss_pred EcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 248 SEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+.|.+|++||+++.+ ++.++... .++..++.+..++.|++-.++..|+++
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred CCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEE
Confidence 999999999999876 45555544 678889999888899998888888884
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=196.43 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=212.2
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE-----EEEeecCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-----TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+++|.+.|++++|+.||++|++++.|++|++|+++..... ...+. -+..+.+.|.|+-...++..-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999998853111 11111 123578999995555666666667899
Q ss_pred EEECCCCC---CceE--------E-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002493 169 IWNLGSPD---PNFT--------L-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 169 i~d~~~~~---~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
+|.+...+ .... + ..|...+..+-. .++..+|++++.|..|.+|+++ |+.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99874321 1111 1 123334444443 4444599999999999999998 999999988888888899
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCC---Cc-----ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEe
Q 002493 237 FHPELPIIITGSEDGTVRIWHAT---TY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~---~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~ 308 (915)
.||+|+++++++.--.|++|.+- .| ..+..+.+|...|..++|+++..++++.+.||.+++|...-+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr----- 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR----- 310 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----
Confidence 99999999999999999999853 22 245678899999999999999999999999999999843221
Q ss_pred cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc---
Q 002493 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--- 385 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~--- 385 (915)
+....+-.+ +..|. ..+......+-.+.++|+|+.||+.....+.+|.....+
T Consensus 311 -------Y~~~qDpk~-----------Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 311 -------YEAGQDPKI-----------LKEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred -------EecCCCchH-----------hhcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 111111110 11121 111223334568999999999999999999999766543
Q ss_pred ---ccCccceeEEEEecCCcEEEEecCCeEEEe
Q 002493 386 ---NRSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (915)
Q Consensus 386 ---~~~~~~~~~~~~s~~~~~l~~~~~~~v~v~ 415 (915)
..+.+.+.+++|+++|+|+++..+..++|+
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 335578899999999999999999999987
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=195.86 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=213.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee--EE--EEecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KS--FEVTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~--~~--~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~ 82 (915)
...|++|++.|++++||.||++||+++.|+.|+||+++.-... +. ....-+..+.+.|+||-+-+++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568899999999999999999999999999999998763211 11 1112235678999999887766654 45899
Q ss_pred EEECCC---Ccee---------EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEE
Q 002493 83 VYNYNT---MDKV---------KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (915)
Q Consensus 83 vwd~~~---~~~~---------~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 150 (915)
+|-+.. |... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++ | +..+.+......-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceee
Confidence 997642 1111 1112466667777788888999999999999999999 4 455555555555677889
Q ss_pred ccCCCCEEEEEECCCcEEEEECC---CC-----CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----
Q 002493 151 NPKDTNTFASASLDRTIKIWNLG---SP-----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT---- 218 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 218 (915)
+| +++++++++..--|++|.+- .| ...+.+.+|...|...+|++++. .+++.+.||++++||+.-
T Consensus 237 SP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 237 SP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred CC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeeccceEec
Confidence 99 99999999999999999862 22 34677899999999999999988 599999999999999752
Q ss_pred Cc---EEEEe----cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEe
Q 002493 219 KS---CVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 219 ~~---~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
++ .+++. ....+....+.++|+|+.|+.+. ...+++|..++|+...++. .|...|.+++|+++|+++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 22 12221 12233445899999999888765 5589999999888766554 5678899999999999999887
Q ss_pred cCCeE
Q 002493 291 DEGTI 295 (915)
Q Consensus 291 ~dg~v 295 (915)
+.-..
T Consensus 393 dr~vr 397 (420)
T KOG2096|consen 393 DRYVR 397 (420)
T ss_pred ceeee
Confidence 64433
No 128
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.8e-24 Score=228.66 Aligned_cols=251 Identities=20% Similarity=0.392 Sum_probs=195.4
Q ss_pred eEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--------------------------------C-------
Q 002493 92 VKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--------------------------------G------- 131 (915)
Q Consensus 92 ~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------- 131 (915)
.+.+. .|.+.|++|.||+||+|||+|+.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998755 0
Q ss_pred --------------------eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002493 132 --------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 132 --------------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
..+...+.+|...|..+.|+. +++|++++.|.+|++|++...+++..|. |...|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 122333568999999999994 8899999999999999999888888876 99999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-
Q 002493 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
+|+|..++ |+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....++......+
T Consensus 416 aFnPvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99998776 99999999999999998666554443 4478999999999999999999999999998877765544321
Q ss_pred -------CccEEEEEEecCCC-EEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCcee
Q 002493 271 -------LERVWAIGYMKSSR-RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 271 -------~~~v~~i~~~~~~~-~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
..+|+.+.|.|... .|.+.+.|..|+|..+++..+..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~----------------------------------- 538 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH----------------------------------- 538 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-----------------------------------
Confidence 24799999998644 58888899999985443322111
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc
Q 002493 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR 385 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~ 385 (915)
.++...... .-..-.|+.||++|++++ |..+++|......
T Consensus 539 --KfKG~~n~~-SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 539 --KFKGFRNTS-SQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred --hhcccccCC-cceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 111111111 113557888999999888 7788888765443
No 129
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.6e-23 Score=193.88 Aligned_cols=263 Identities=17% Similarity=0.277 Sum_probs=216.9
Q ss_pred EEEEEcCCcEEEEECCCC------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002493 30 ILASLYSGTVCIWNYQSQ------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 30 la~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
+++|++...|.=+++.-. ..+..+..|.+++++++. ++.++++|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 667777766666654321 124456679999999998 588999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 002493 98 HTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
|.+.|+++.|.+.-. .|++|++||.|.+|+... |.+...+.+|.+.|+.++.+| .+.+-++.+.|+.++.|++-.+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence 999999999998765 899999999999999876 589999999999999999999 8888899999999999999998
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEE
Q 002493 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~i 255 (915)
+.-+.+.-. ..-..+.|+|.|+ +++.++.+ .|-+|.+.+......+.. ...+.++.|.. +..|++|+.|+.|++
T Consensus 160 r~a~v~~L~-~~at~v~w~~~Gd--~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLK-NKATLVSWSPQGD--HFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccC-CcceeeEEcCCCC--EEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCceEEE
Confidence 876666532 3335699999988 56666654 688999887666555542 34566666654 468999999999999
Q ss_pred EeCCCcceeeeeecCCccEEEEEE--ecCCCEEEEEecCCeEEEecCCC
Q 002493 256 WHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~g~~dg~v~i~~~~~ 302 (915)
||.....+...+..|..+|.++.+ .|++.+|+++++||.|.+|....
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999989999999999999999984 45688999999999999996443
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=210.60 Aligned_cols=244 Identities=22% Similarity=0.347 Sum_probs=204.4
Q ss_pred ecCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCc----------eeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCe
Q 002493 55 VTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMD----------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDML 122 (915)
Q Consensus 55 ~~~~~v~~~~~~~~~~~-l~~g~~dg~i~vwd~~~~~----------~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~ 122 (915)
.|.+.|+.+..-|.... +++++..+.|.|||+.+-. +-..+.+|.+.-.+++|++.. -+|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 38889999999997654 5566788999999986421 122677888877889999864 37899999999
Q ss_pred EEEEECCCCe------eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC--CCCCceEEecCCCCeeEEEEE
Q 002493 123 IKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 123 i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~ 194 (915)
|++||+.... .....+.+|...|..++|+|...++|++++.|+.+.|||++ +.++......|.++|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997542 34567889999999999999999999999999999999999 566677778999999999999
Q ss_pred eCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCc-----------
Q 002493 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTY----------- 261 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~----------- 261 (915)
|-+.. +|++|+.|++|++||+|+ .+++.++.+|...|.++.|+|.. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 98754 899999999999999998 45789999999999999999965 58889999999999998632
Q ss_pred ---ceeeeeecCCccEEEEEEecCCCE-EEEEecCCeEEEec
Q 002493 262 ---RLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKI 299 (915)
Q Consensus 262 ---~~~~~~~~~~~~v~~i~~~~~~~~-l~~g~~dg~v~i~~ 299 (915)
+++....+|...|..++|+|...+ |++.++|+.+.||.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234566678889999999999765 55688999999984
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.2e-24 Score=212.25 Aligned_cols=253 Identities=17% Similarity=0.271 Sum_probs=216.4
Q ss_pred eEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE
Q 002493 29 WILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (915)
Q Consensus 29 ~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 107 (915)
+++++.. ...|.+|.+.........-.-+++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 5555543 456899998776555544456789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECCC--------CeeEEEEeecCCccEEEEEEccC-CCCEEEEEECCCcEEEEECCCCCCc
Q 002493 108 HPTLPYVLSSSDDMLIKLWDWEK--------GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (915)
+.||.+|++|+.||.|.+|++.. .......+..|.-+|+++...+. ....++++|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999997632 23567788899999999998773 3568999999999999999999877
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----------------cEEEEecCCcc--CeEEEEEeCC
Q 002493 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------------SCVQTLEGHTH--NVSAVCFHPE 240 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~i~~i~~~~~ 240 (915)
.++. ....+.+++..|... .+.+|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-|
T Consensus 212 lti~-fp~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEe-cCCcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 7765 567889999999887 7999999999999887432 23556778887 9999999999
Q ss_pred CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCC
Q 002493 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR 284 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 284 (915)
|.+|++|+.||.|++||+.+.++++++....++|+.+.+.|-.+
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999999999887778999999877543
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.6e-23 Score=214.23 Aligned_cols=282 Identities=21% Similarity=0.299 Sum_probs=233.3
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCEEE-EEEcC-CCCEEEEEEcCCe
Q 002493 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV--KVFEAHTDYIRC-VAVHP-TLPYVLSSSDDML 122 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~-l~~s~-~~~~l~~~~~dg~ 122 (915)
-++-+.+.+|+..|+.++..+.. ++++++.||++++|+-...+.+ ..+.+|.+.|.+ +++-+ ++-++++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 34567889999999998876554 8999999999999997665544 346678887777 88875 4456999999999
Q ss_pred EEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002493 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
|.+|...+. .+..++.+|...|+++.... ++ .+++||.|.++++|-+ ++....+.+|...|..+...|.. .+
T Consensus 83 i~v~~~~~~-~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~---~~ 154 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN---TY 154 (745)
T ss_pred EEEEecCCC-CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC---cE
Confidence 999999887 88889999999999998765 44 4999999999999976 45566689999999999999887 49
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002493 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
++|+.|.+|++|.- ++.++++.+|.+.|..+++-+++ .+++++.||.|++|++ +|..+....+|..-+++++...+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALS 230 (745)
T ss_pred EeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCC
Confidence 99999999999984 88899999999999999999985 5889999999999998 79999999999999999998889
Q ss_pred CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002493 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
+..++++++|++++||...+ -.+.+ ......+.+..+-
T Consensus 231 ~~~Ivs~gEDrtlriW~~~e------------------~~q~I------------------------~lPttsiWsa~~L 268 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKDE------------------CVQVI------------------------TLPTTSIWSAKVL 268 (745)
T ss_pred CCeEEEecCCceEEEeecCc------------------eEEEE------------------------ecCccceEEEEEe
Confidence 99999999999999984331 00111 1111233466777
Q ss_pred CCCCEEEEEcCCcEEEEEeec
Q 002493 363 PNGRFVVVCGDGEYIIYTALA 383 (915)
Q Consensus 363 ~~g~~lav~~~~~~~i~~~~~ 383 (915)
++|..++.|+||.++||+...
T Consensus 269 ~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 269 LNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eCCCEEEeccCceEEEEEecc
Confidence 889999999999999997664
No 133
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.8e-23 Score=214.38 Aligned_cols=286 Identities=21% Similarity=0.330 Sum_probs=228.6
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE--EEEEeCCCeEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW--VVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~g~~dg~i~v 83 (915)
.+...+.||++.|+|++.+|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+.. ||++-... +.|
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 3445678999999999999999999999999999999999999999887 5568999999997653 44432222 333
Q ss_pred ---------------------------------EECCCC---c-eeEEEecCCCCEEEEEEcCCCCEEEEEEcC---CeE
Q 002493 84 ---------------------------------YNYNTM---D-KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---MLI 123 (915)
Q Consensus 84 ---------------------------------wd~~~~---~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i 123 (915)
|.-... + -++..-.|...|+.+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 322110 0 123334688899999999999999987653 578
Q ss_pred EEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEE
Q 002493 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
.|.++... ....-|....+.|.++.|+| ...+|++++ ...|++||+.....+..+......|..++++|.|++ |+
T Consensus 549 liHQLSK~-~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn--li 623 (733)
T KOG0650|consen 549 LIHQLSKR-KSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN--LI 623 (733)
T ss_pred EEEecccc-cccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe--EE
Confidence 89998876 34455656677899999999 666777666 468999999888777777777888999999999995 99
Q ss_pred EEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc---------eeeeeecCCc-
Q 002493 204 TGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---------LENTLNYGLE- 272 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~- 272 (915)
.|+.|+.+..+|+.-. ++.+++.-|...+++++|++.-+++++|+.||++.++.-.-+. ++..+.+|..
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 9999999999999854 5677888899999999999999999999999999999733211 3455666643
Q ss_pred ---cEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 273 ---RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 273 ---~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.|..+.|+|...+|.+++.||++++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 38889999999999999999999986
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=9.1e-23 Score=191.38 Aligned_cols=283 Identities=18% Similarity=0.292 Sum_probs=226.5
Q ss_pred ccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCc-------e---eE-----EEEecCCCEEEEEEeC-CCCEEEE
Q 002493 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQT-------M---AK-----SFEVTELPVRSAKFVA-RKQWVVA 74 (915)
Q Consensus 12 ~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~-------~---~~-----~~~~~~~~v~~~~~~~-~~~~l~~ 74 (915)
..|.+.|.++...+ .|+++++|+.||.|.+||++.-. . +. .-.+|.-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999998 57899999999999999997642 1 11 1124667899999999 5567788
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC---CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEc
Q 002493 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (915)
++-|.+++|||.+|.+....|+ ..+.|.+-+|||- ..++++|..+-.|++.|+.+| ....++.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence 8889999999999998888886 4677888899884 347889999999999999999 8899999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCc--------------eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSP-DPN--------------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~-~~~--------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
|...-.|++|+.||.|++||++.. .+. ..-..|.+.|+.++|..++. ++++.+.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeec
Confidence 987888999999999999999753 111 11245778899999999888 7999999999999999
Q ss_pred CCCcEEE-Eec--CCcc----CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE
Q 002493 217 QTKSCVQ-TLE--GHTH----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 217 ~~~~~~~-~~~--~~~~----~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g 289 (915)
.+|+... .+- .|.. .+. +. +.+...++---.++.+.++++-.|..+..+..|...+.+..+.|+-+...+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875321 110 0111 111 22 3333444444556889999999999999999998899999999999999999
Q ss_pred ecCCeEEEecC
Q 002493 290 YDEGTIMVKIG 300 (915)
Q Consensus 290 ~~dg~v~i~~~ 300 (915)
..|+.+..|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999854
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-22 Score=190.80 Aligned_cols=268 Identities=18% Similarity=0.207 Sum_probs=209.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|.++.|+|.++.|++++.||.+++|+..+......++ |..++.+++|.++ ..+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 45679999999999999999999999999998875555554 8899999999974 46999999999999999987 34
Q ss_pred EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|...|.|+.+++ ..+.+++|+.|++|++||.+.......+.. ...|.++... ++ .|++|+.+..|.+||
T Consensus 88 ~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~--~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN--RLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC--EEEEeecCceEEEEE
Confidence 55677999999999998 788999999999999999987655555543 3477777653 44 699999999999999
Q ss_pred CCCCcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCC---------ccEEEEEEe
Q 002493 216 YQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL---------ERVWAIGYM 280 (915)
Q Consensus 216 ~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~---------~~v~~i~~~ 280 (915)
+++........ ...-.+.++++.|++.-.++++-||.|.+=.+... +....++.|. -+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99866543222 23456889999998888899999999887555443 2223343332 368999999
Q ss_pred cCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002493 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|-.+.+++|+.||.|.+|.....+- ++++...+..|..++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKr----------------------------------------l~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKR----------------------------------------LKQLAKYETSISSLS 281 (323)
T ss_pred cccceEEecCCCceEEEccCcchhh----------------------------------------hhhccCCCCceEEEE
Confidence 9999999999999999984333211 112233344577999
Q ss_pred ECCCCCEEEEEcC
Q 002493 361 HNPNGRFVVVCGD 373 (915)
Q Consensus 361 ~s~~g~~lav~~~ 373 (915)
|+.+|..||++++
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999874
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.5e-23 Score=206.07 Aligned_cols=288 Identities=19% Similarity=0.265 Sum_probs=227.4
Q ss_pred hhcccCCCCEEEEEEcCCCC--eEEEEEcCCcEEEEECCCC----ceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeE
Q 002493 9 RKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~--~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i 81 (915)
....-|.++|++++|||..+ .+|+|...|+|-+||+.++ .-+..+..|..+|.++.|+|. -..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34566899999999999765 7888889999999999533 345567889999999999995 4678899999999
Q ss_pred EEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
++-|++++..-..+. .....+..+.|+.+.+.++.+..=|.+.+||.+++......+.-|...|.+++++|-...+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998764433333 244567888999998889999888899999999876656667778889999999998889999
Q ss_pred EEECCCcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC----CCcEEEEecCCc--
Q 002493 160 SASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ----TKSCVQTLEGHT-- 229 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~-- 229 (915)
+++.|++.+|||++.-. +......|...|++..|+|.+. .|++.+.|..|+|||.. ...+..++. |.
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 99999999999997632 2344457999999999999987 49999999999999973 223333332 22
Q ss_pred --cC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCc-cEEE-EEEecCCC-EEEEEecCCeEEEec
Q 002493 230 --HN--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWA-IGYMKSSR-RIVIGYDEGTIMVKI 299 (915)
Q Consensus 230 --~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~-i~~~~~~~-~l~~g~~dg~v~i~~ 299 (915)
.. .....|.|+..+|++|-.-..|-|+|-..++.+..+..+.. .|.+ ..|+|-+. +++.|+..|.+.+|.
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 12 33568999999999999999999999888887887665543 4444 57999988 444556677787764
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=192.45 Aligned_cols=280 Identities=10% Similarity=0.173 Sum_probs=218.4
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
-.|+.||+-|.+||+|+.||.|.|||+.+...-+.+.+|-.||++++||++|+.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6899999999999999999999999999999889999999999999999999999999999999999999999988887
Q ss_pred CCCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeeEEEEeecC-----CccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 98 HTDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
..++|+...|+|.....+ ++-.+..-.+-++..+ ....+... +..-.+..|.+ .++++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEe
Confidence 467999999999654333 3323333444454432 11122111 11122335777 899999999999999999
Q ss_pred CCCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-------CcE--EEEecC--CccCeEEEEEeC
Q 002493 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KSC--VQTLEG--HTHNVSAVCFHP 239 (915)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~--~~~~~~--~~~~i~~i~~~~ 239 (915)
..+.+.+..++-.. ..|..+.++..|. .|++.+.|+.|+.|+++. +++ .+.++. ....-.+++|+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988887776555 7788899988887 799999999999999863 111 111111 122345789999
Q ss_pred CCCEEEEEEc-CCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeEEEecCCCcc
Q 002493 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP 304 (915)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~ 304 (915)
+|.+++.|+. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|.....+
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 9999988774 3469999999999999999887 567889999998877776 88999998544443
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=202.54 Aligned_cols=260 Identities=17% Similarity=0.286 Sum_probs=216.7
Q ss_pred CCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 36 SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..++.+||+++|....++++. ...-.++..- .+.+++++. ....|.+|.+..........--+++|.+++-+|.|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 456999999999988888765 2222222222 235666654 4568999998765544433345788999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC---------CCCCceEEecC
Q 002493 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------SPDPNFTLDAH 184 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~ 184 (915)
|+.|+..|.|++|.+.+| .+..++..|-..|+|+.|+. |+.+|++|+.||.|.+|++- +.++...+..|
T Consensus 96 l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 999989999999999999 77778899999999999998 99999999999999999872 34677888999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--
Q 002493 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-- 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 262 (915)
.-+|+.+...+.+....+++++.|.++++||+..|..+.++. ....+.+++.+|-+..+.+|+.+|.|.+.++.+..
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 999999999998888899999999999999999999888887 56789999999999999999999999988765322
Q ss_pred --------------eeeeeecCCc--cEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 263 --------------LENTLNYGLE--RVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 263 --------------~~~~~~~~~~--~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
....+.+|.+ .|+|++.+-||..|++|+.||.+.+|.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 3445667766 899999999999999999999999983
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=199.79 Aligned_cols=286 Identities=13% Similarity=0.210 Sum_probs=218.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCe
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 132 (915)
..++|+++.|+|....+++++.||++++|.+.. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a- 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA- 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-
Confidence 356899999999999999999999999998753 345666666678999999999998 8999999999999999876
Q ss_pred eEEEE--eecC-CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 133 MCTQI--FEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 133 ~~~~~--~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
+..+. ..++ ...+.....+| +++++++.+..|.|.+....+++.+..++ ..+.|..++|+.++. .|++.+.+|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~G 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTG 366 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCc
Confidence 33222 2233 23466778889 88999999999999999999998888776 577899999998886 688888899
Q ss_pred eEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCcEEEEeCCC------cceeeeeecCCccEEEEEEecC
Q 002493 210 TAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRIWHATT------YRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
.|.+||++...++..+....+ .-+++|.++++.+|++|+..|.|.|||..+ .+++..+..-...|+++.|+++
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999999999888863322 245678889999999999999999999543 3455555555578999999999
Q ss_pred CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002493 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
++.||+++.-..=.+.+-+-+....+.. |.. ....-..+++++||
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsN-----------------------fP~------------~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSN-----------------------FPT------------SNTKVGHVTCMAFS 491 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeecc-----------------------CCC------------CCCcccceEEEEec
Confidence 9999998764322221111111100000 000 12223467899999
Q ss_pred CCCCEEEEEc-CCcEEEEEe
Q 002493 363 PNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~~~ 381 (915)
|.|.++|+++ .|++.+|.+
T Consensus 492 P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCceEEeecCCCceeeEee
Confidence 9999999998 788888865
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.5e-24 Score=227.13 Aligned_cols=259 Identities=20% Similarity=0.407 Sum_probs=232.0
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+.+++.+-..-.+++|+.+. +..|...|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 33444454556677887533 445778888888877889999999999999999887777778999999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC
Q 002493 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 186 (915)
|++...+|+.|+.+|+|++||++.. ...+.+.+|...+.++.|+| -+.+++.|+.|+.+++||++...+...+.+|..
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999999999999999988 66778899999999999999 888999999999999999998889999999999
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002493 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.+.++.|+|+|. +++.|++|..++|||...|+.+..|..|...+..+.|+|..-++++|+.|++|++||+.+.+.+..
T Consensus 156 vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 156 VVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeEEEeecCCCc--eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 999999999998 899999999999999999999999999999999999999988999999999999999999999988
Q ss_pred eecCCccEEEEEEecCCCEEEEEecCCeE
Q 002493 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~~~~l~~g~~dg~v 295 (915)
.......|.+..|+|++..+.+|......
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhhh
Confidence 88888899999999999999888765443
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=8.3e-22 Score=202.87 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=110.0
Q ss_pred hhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCceeE------EEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002493 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK------SFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 81 (915)
-.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|...+ .+.+.+-.|.|+.|+|...-|...+..|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34678999999999999 45589999999999999998553221 122334578999999988778777888999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC
Q 002493 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
.|||+.+++.+..+.+|.+.|.++.|+.||..|++++.|..|+|||.+......+...+|
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 999999999999999999999999999999999999999999999987653444444444
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=9.5e-23 Score=204.43 Aligned_cols=274 Identities=20% Similarity=0.361 Sum_probs=219.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC--eeEEEEee--cCCccEEEEEEccCCCCEEEEEECCCcEEEEEC
Q 002493 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--WMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.|..-|..+.+|...+++++|+. |.|+|||+... +.....+. ....+|.++...| +++.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 47788889999999999999886 78999999743 12222222 2457899999999 9999999999999999999
Q ss_pred CCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002493 173 GSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
....+...... .......++.+|+.+ +.++++.||.|.|||+++...++.+++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 88766544332 234456678888877 88999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeec
Q 002493 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
++||.||+++++.+...... ..|.++.++|++.+|++|-.++.+.+-....+
T Consensus 573 ntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~skp--------------------------- 624 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--------------------------- 624 (705)
T ss_pred cceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEecCCc---------------------------
Confidence 99999999999877766554 67999999999999999999998877211110
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeec----ccccCccceeEEEEecCCcEEE
Q 002493 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALA----WRNRSFGSALEFVWSSDGEYAV 405 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~----~~~~~~~~~~~~~~s~~~~~l~ 405 (915)
++ ..+..++.-|-++.|++.|++++..+ |+-+-.|.... +..+...+|+++..|.|.+|++
T Consensus 625 ---------~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 625 ---------EK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred ---------cc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 00 01234455567899999999999887 88888886543 3456677899999999999999
Q ss_pred Eec-CCeEEEec
Q 002493 406 RES-SSKIKIFS 416 (915)
Q Consensus 406 ~~~-~~~v~v~~ 416 (915)
+++ +.+-.||.
T Consensus 691 TGSGdkkATVYe 702 (705)
T KOG0639|consen 691 TGSGDKKATVYE 702 (705)
T ss_pred ecCCCcceEEEE
Confidence 999 55777774
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.7e-24 Score=223.48 Aligned_cols=238 Identities=24% Similarity=0.420 Sum_probs=221.2
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+.+..|+..|.|+..-..++.+++|+.+..+-+|.+..-..+..+.+|.++|.++.|++...+|++|+.+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 56677999999999878889999999999999999888777888999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
++.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++.. -+...+.+|...+.++.|+| ++.+++.++.|.+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCcceee
Confidence 9999999999999999999999999999999999999999955 58888899999999999999 999999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002493 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
+||+..++....|..|.+.+..+.|+|..- +++.|+.|+++++||+++.+.+.........|.+..|+|++..+++|.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eecccccccccccccccccccccccCchhh--hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999999999988765 789999999999999999888888888888999999999999888887
Q ss_pred cC
Q 002493 249 ED 250 (915)
Q Consensus 249 ~d 250 (915)
..
T Consensus 258 q~ 259 (825)
T KOG0267|consen 258 QI 259 (825)
T ss_pred hh
Confidence 65
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.9e-20 Score=199.52 Aligned_cols=266 Identities=14% Similarity=0.141 Sum_probs=202.9
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++++.||.|++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888899999999999998888876544 6789999999977 5667789999999999888877765544 56789
Q ss_pred EcCCCCEEEEE-EcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCC-cEEEEECCCCCCceEEecC
Q 002493 107 VHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 107 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 184 (915)
|+|+++.++++ +.++.|++||+.+. .....+. +...+.+++|+| ++..+++++.++ .+.+||..+++...... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 99999987655 56899999999986 4444443 223467899999 888888888765 46778988776554443 2
Q ss_pred CCCeeEEEEEeCCCcCEEE-EEeCCCeEEEEECCCCcEEEEecCCc-------cCeEEEEEeCCCCEEEE-EEcCCcEEE
Q 002493 185 QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLEGHT-------HNVSAVCFHPELPIIIT-GSEDGTVRI 255 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~-~~~dg~v~i 255 (915)
...+.+++|+|++. +++ ++..++.|++||+.+++.+..+..+. .....++|+|+++++++ .+.++.+.+
T Consensus 156 ~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 34457889999887 454 44568999999999988776654221 12346889999997654 345678999
Q ss_pred EeCCCcceeeeeecCCccEEEEEEecCCCEEEEE-ecCCeEEEecCCC
Q 002493 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIGRE 302 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g-~~dg~v~i~~~~~ 302 (915)
||+.+++....+.. ...+++++|+|+|++|+++ ..+|.|.+|....
T Consensus 234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 99998887765543 3578999999999999886 4689999975444
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.5e-23 Score=218.04 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=204.1
Q ss_pred EEEEEEcC-CCCeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcee
Q 002493 18 VKSVDLHP-SEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 18 v~~~~~sp-~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
+..+.|+. +.++||+++.+|.|.+||+.. .+++..|..|...++++.|++. ..+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 45577775 567999999999999999987 5666778899999999999985 467889999999999999998888
Q ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 93 KVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
.++.+....|+.+.|+| .+.+++++.+.|.+.+||++....+...+..|.++|.|+.|+| +..+||+|+.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 88988899999999999 4668899999999999999988788888999999999999999 999999999999999999
Q ss_pred CCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEe--CCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEE
Q 002493 172 LGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIIT 246 (915)
Q Consensus 172 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~ 246 (915)
..+++...... ....+|.++.|-|.... .|++++ .|-.|+|||++.. -+..++..|...++.++|.. |...+.+
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 98665433222 24578999999998763 566665 4789999999753 35677888999999999976 4457889
Q ss_pred EEcCCcEEEEeCCCcc
Q 002493 247 GSEDGTVRIWHATTYR 262 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~~ 262 (915)
++.||.|.....++..
T Consensus 328 ~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNAT 343 (839)
T ss_pred ecCccHHHHhhhhccc
Confidence 9999988766555443
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=214.12 Aligned_cols=277 Identities=21% Similarity=0.356 Sum_probs=219.2
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEec---CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVT---ELPVRSAKFVA-RKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~---~~~v~~~~~~~-~~~~l~~g~~dg~i~vwd~~ 87 (915)
....+|+..++-..|++++. ..+.||.+.... +...+... ...+..+.|.. +.++||+++..|.|.+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45667888898888888874 568888765432 11121111 12456678874 46789999999999999998
Q ss_pred C---CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 88 T---MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 88 ~---~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
. .+.+..|..|...+++++|++..+ +|++||.||+|++||++.. ....++.+....|..+.|+|..++.|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecC
Confidence 6 455667889999999999999765 6789999999999999987 5566677788889999999999999999999
Q ss_pred CCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc--EEEEecCCccCeEEEEEeCC
Q 002493 164 DRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 164 dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~ 240 (915)
.|.+.+||++... +...+..|.++|.|+.|+|++. +|++|+.|+.|+|||..+++ .+.++. ...+|.++.|-|.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 9999999998764 4567889999999999999665 99999999999999998654 344444 4568999999998
Q ss_pred CCE-EEEEE--cCCcEEEEeCCC-cceeeeeecCCccEEEEEEec-CCCEEEEEecCCeEEE
Q 002493 241 LPI-IITGS--EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMV 297 (915)
Q Consensus 241 ~~~-l~~~~--~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~g~~dg~v~i 297 (915)
.++ |++++ .|-.|++||++. +-+..++..|...++.++|.. |...+.+++.||++.-
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 764 45444 467899999874 446678888999999999976 3456677888888765
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-21 Score=181.91 Aligned_cols=235 Identities=16% Similarity=0.285 Sum_probs=182.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee
Q 002493 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 60 v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+. +.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999984 555444
Q ss_pred cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC----eeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG----VNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 140 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..++|+.+.|+|.+.+.+++.-.+..-.+-++..++....-....+. -.+..|.+.|+ |+++|...|.+.++|
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEe
Confidence 56889999999988888887777766666666543221111111111 12234666665 999999999999999
Q ss_pred CCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc-------cee--eeeec--CCccEEEEEEecCC
Q 002493 216 YQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTY-------RLE--NTLNY--GLERVWAIGYMKSS 283 (915)
Q Consensus 216 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~--~~~~~--~~~~v~~i~~~~~~ 283 (915)
..+.+++..++... ..|..+.++..|+.|+..+.|..||.|+++.- ++. +.++. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999998887665 78999999999999999999999999997621 111 11111 11234578999999
Q ss_pred CEEEEEecC-CeEEEe
Q 002493 284 RRIVIGYDE-GTIMVK 298 (915)
Q Consensus 284 ~~l~~g~~d-g~v~i~ 298 (915)
.+++.|+.. -.+++|
T Consensus 262 eYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIW 277 (405)
T ss_pred cEEEeccccceeEEEE
Confidence 999887743 335555
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.7e-21 Score=179.69 Aligned_cols=253 Identities=15% Similarity=0.244 Sum_probs=197.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC----ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCC
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDM 79 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg 79 (915)
.+...-.+|.+-|.++.|.+.|+.+|+++.|++|+|||..+. .+....+.|.+.|..+.|.+ =|+.+|+++.|+
T Consensus 4 s~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 4 SMAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 344455789999999999999999999999999999996543 45556778999999999976 489999999999
Q ss_pred eEEEEECCC---------CceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCC-----eeEEEEee----
Q 002493 80 FIRVYNYNT---------MDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG-----WMCTQIFE---- 139 (915)
Q Consensus 80 ~i~vwd~~~---------~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~---- 139 (915)
++.||.-.. .....++....+.|+.+.|.|. |-.+++++.||.++||+.... +.+...+.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 999997521 1223455666788999999995 567999999999999986542 22222222
Q ss_pred ---cCCccEEEEEEccC--CCCEEEEEECC-----CcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcC--EEE
Q 002493 140 ---GHSHYVMQVTFNPK--DTNTFASASLD-----RTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKP--YLI 203 (915)
Q Consensus 140 ---~~~~~v~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~--~l~ 203 (915)
.+..+..|+.|+|. ...+|++|+.+ +.+.||....+. .+.++.+|..+|+.++|.|+-... +|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 45667889999982 24678888765 478888765543 334567899999999999975433 588
Q ss_pred EEeCCCeEEEEECCCC--------------------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 204 TGSDDHTAKVWDYQTK--------------------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|..|.+.|.||+||+|...
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 899999 999998731 1345577899999999999999999999999999999853
No 149
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.89 E-value=3.8e-19 Score=180.35 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=168.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE-cC-------CCCEEEEEEcCCeEEEEE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-HP-------TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-s~-------~~~~l~~~~~dg~i~iwd 127 (915)
|...|.|+.|+.+...+.++ +|..+.+|+--+...........+.+....+ -+ ....++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 55567799999887766555 4555666654443433333322222222111 11 223688999999999987
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
-.. ........|.+.+.+-.|+| ++.-|++++.||.|++|.- +|-...++.....+|.|++|.|+++. .+.+.
T Consensus 92 k~~--rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~-- 164 (737)
T KOG1524|consen 92 KSA--RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS-IVFCQ-- 164 (737)
T ss_pred ccc--hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc-eEEec--
Confidence 443 46667788999999999999 9999999999999999985 44444455556788999999999875 44433
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
.+.+.|=.+.....+...+.|.+-|.++.|+|...++++|++|-..++||. -|+.+..-..|..+|++++|.|+ ..++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-ccee
Confidence 356777677767777888999999999999999999999999999999994 47888777888899999999999 6666
Q ss_pred EEec
Q 002493 288 IGYD 291 (915)
Q Consensus 288 ~g~~ 291 (915)
+++.
T Consensus 243 v~S~ 246 (737)
T KOG1524|consen 243 LWSY 246 (737)
T ss_pred eeee
Confidence 6553
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.1e-22 Score=195.94 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=193.9
Q ss_pred EEEEEEcC-------CCCeEEEEEcCCcEEEEECCCCce---------------------eEEEEecCCCEEEEEEeCC-
Q 002493 18 VKSVDLHP-------SEPWILASLYSGTVCIWNYQSQTM---------------------AKSFEVTELPVRSAKFVAR- 68 (915)
Q Consensus 18 v~~~~~sp-------~~~~la~~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~~~~- 68 (915)
..|++|.. .|+++|+|+.+..|.|||+.-... -..-.+|+..|.+++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666653 367999999999999999752110 0112357788889999875
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEE
Q 002493 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (915)
.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|.+........+ ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 4678999999999999999999999999999999999999964 578999999999999998431222222 23467999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE--EEE
Q 002493 148 VTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQT 224 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~ 224 (915)
++|+|...+.+++++.||+|+-+|+++. ++++++..|..+|.++++++...+ ++++++.|+.|++|++....+ +..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCCccccc
Confidence 9999988899999999999999999886 899999999999999999887655 899999999999999875333 222
Q ss_pred ecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCccee
Q 002493 225 LEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
-.-.-+...|.++.|+-. .++.|+..+.+++||+.+...+
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222233466777888765 6677888889999999877644
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=5.4e-20 Score=195.98 Aligned_cols=264 Identities=12% Similarity=0.150 Sum_probs=198.1
Q ss_pred hhcccCCCCEEEEEEcCCCCeE-EEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Q 002493 9 RKLAQRSERVKSVDLHPSEPWI-LASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~l-a~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~vwd~ 86 (915)
..+.+| ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.|+|+++.++++ +.++.|++||+
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 344444 347789999999977 4566789999999999888777765443 5678999999987665 45899999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE-EEECC
Q 002493 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLD 164 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~d 164 (915)
.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..++....... ....+.++.|+| ++..++ ++..+
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~-dg~~l~~~~~~~ 178 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTA-DGKELWVSSEIG 178 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECC-CCCEEEEEcCCC
Confidence 98877777753 33468899999999999988765 56778988773332222 223457789999 677665 44568
Q ss_pred CcEEEEECCCCCCceEEecCC-----C--CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002493 165 RTIKIWNLGSPDPNFTLDAHQ-----K--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
+.|.+||+.+++....+..+. . ....++|+|+++. .+++.+.++.+.+||.++++.+..+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 999999999887666554221 1 2346788888873 23444567789999999888776554 4457899999
Q ss_pred eCCCCEEEEE-EcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002493 238 HPELPIIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 238 ~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
+|+|++|+++ +.+|.|++||+.+++.+..+..+ ...+.++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999886 46899999999999999888876 5558888765
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=7.5e-21 Score=189.63 Aligned_cols=253 Identities=19% Similarity=0.278 Sum_probs=192.7
Q ss_pred EECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcCCC-CEE
Q 002493 42 WNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTL-PYV 114 (915)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~-~~l 114 (915)
+|+.+.........+.++|++++|+|.. +.+++|+..|+|-+||+.+. ..+..+..|+.+|.+|.|+|.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444445556677889999999999965 57889999999999999532 2356678899999999999954 578
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeec--CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEE
Q 002493 115 LSSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCV 191 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~ 191 (915)
++.|.||+|++-|++++ .....+.. ....+.++.|+. +...++.+..=|...+||++++.. ...+..|...|+++
T Consensus 251 ~ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeccCceeeeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 99999999999999876 32222222 445577788887 555566666667999999998765 55667788899999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCc----EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC----Ccce
Q 002493 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRL 263 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~----~~~~ 263 (915)
+++|-... +|++++.|++.+|||++.-. ++...-.|...|.+..|||.+..|++.+.|..|+|||.. ...+
T Consensus 329 ~~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 329 ALNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred ecCCCCch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 99998765 89999999999999998622 233344589999999999998889999999999999973 2233
Q ss_pred eeeeecCCc-----cEEEEEEecCCCEEEEEecCCeEEE
Q 002493 264 ENTLNYGLE-----RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 264 ~~~~~~~~~-----~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
..++..... ......|.|+..++++|-.-..|-+
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 333332211 2345689999999998877666665
No 153
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=203.30 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=207.1
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee
Q 002493 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133 (915)
Q Consensus 55 ~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 133 (915)
.|...-+.++|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++ .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~-~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG-E 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC-C
Confidence 57778899999999999999999999999998766 5555555577888888765 448999999999999999987 4
Q ss_pred EEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002493 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
...++....-++.+++++. ++++++.|+.|-.|++-++........+.+|..+|.++.|+|.+. +|++.+.||.|++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEEecCceEEE
Confidence 4445556678899999998 899999999999999999999999999999999999999999887 8999999999999
Q ss_pred EECCCCcEEEEecCC--------ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC--CccEEEEEEecCC
Q 002493 214 WDYQTKSCVQTLEGH--------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKSS 283 (915)
Q Consensus 214 wd~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~ 283 (915)
||++++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..++.....+... ...+..++|+|.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999998876665431 334677899999888888888999999999999887776543 3448999999999
Q ss_pred CEEEEEecCCeEEEecCC
Q 002493 284 RRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 284 ~~l~~g~~dg~v~i~~~~ 301 (915)
++||+++-+|.|.+|...
T Consensus 245 ~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVD 262 (933)
T ss_pred cEEeeeccCCcEEEEecc
Confidence 999999999999998533
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.2e-20 Score=175.12 Aligned_cols=246 Identities=18% Similarity=0.327 Sum_probs=195.1
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEE
Q 002493 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 54 ~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd 127 (915)
.+|..-|+++.|.+-|+.+|+|+.|++|.|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357788999999999999999999999999996533 34556779999999999976 589999999999999996
Q ss_pred CC--------CCeeEEEEeecCCccEEEEEEccC-CCCEEEEEECCCcEEEEECCCCCCce------EE-------ecCC
Q 002493 128 WE--------KGWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPNF------TL-------DAHQ 185 (915)
Q Consensus 128 ~~--------~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~------~~-------~~~~ 185 (915)
-. ..+....++......|+.+.|.|. -+-.+++++.||.++||+.-..-... .+ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 124555667777889999999993 35678999999999999875432211 11 1355
Q ss_pred CCeeEEEEEeCC-CcCEEEEEeCC-----CeEEEEECCCCc----EEEEecCCccCeEEEEEeCCC----CEEEEEEcCC
Q 002493 186 KGVNCVDYFTGG-DKPYLITGSDD-----HTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDG 251 (915)
Q Consensus 186 ~~v~~~~~~~~~-~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg 251 (915)
.+..|+.|+|.. ..++|++|+.+ +.++||....+. .+.++.+|..+|+.++|.|+- .+|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899999764 34477777766 578899775432 456677899999999999963 3899999999
Q ss_pred cEEEEeCCCc--------------------ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002493 252 TVRIWHATTY--------------------RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 252 ~v~iwd~~~~--------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
|+||++..- +.+..+..|.+.||.+.|+-.|..|++.++||.|++|..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999997631 134557788899999999999999999999999999843
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-21 Score=193.13 Aligned_cols=262 Identities=13% Similarity=0.189 Sum_probs=211.0
Q ss_pred CEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 17 RVKSVDLHPSEPWILASL--YSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.+.++.|+.... |++++ .|..|++|. +.|+ ....-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 389999998765 55443 477899997 4443 2221111222344555555568999999999999999997666
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC-CccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.+.++.|.+.|+++.++....||++++..|.|.|..+.++ .....+... ...|.-+.|+|....+|.+++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7788999999999999999999999999999999999987 333444433 45566899999777788899999999999
Q ss_pred ECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002493 171 NLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
|+.+..++..+ ..|..+...++|+|.... +|++.+.|..|.+||.+.......+. ...+.++++|+++|.+|++|..
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 99988887655 578899999999998765 89999999999999998766655554 5678999999999999999999
Q ss_pred CCcEEEEeCCCc-ceeeeeecCCccEEEEEEecCC
Q 002493 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
.|.|..||++.. .++.++..|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999854 4788888898999999998875
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=6.8e-21 Score=185.16 Aligned_cols=246 Identities=20% Similarity=0.290 Sum_probs=190.8
Q ss_pred hhhcccCCCCEEEEEEcCCC--CeEEEEEcCCcEEEEECCC----------------CceeEEEEecCCCEEEEEEeCCC
Q 002493 8 KRKLAQRSERVKSVDLHPSE--PWILASLYSGTVCIWNYQS----------------QTMAKSFEVTELPVRSAKFVARK 69 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~--~~la~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~ 69 (915)
.....+|.+.+..+.-++-+ .+.|+-+..|.|+|||+.. .+.+.++.+|...=..++|||-.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 33455688888888877755 4555666799999999743 24667788899888999999943
Q ss_pred -CEEEEEeCCCeEEEEECCCCcee---EEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCe-eEEEEeecCCc
Q 002493 70 -QWVVAGADDMFIRVYNYNTMDKV---KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSH 143 (915)
Q Consensus 70 -~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 143 (915)
..|++|..-+.|++|...++... ..+.+|+..|..++|||.. ..|++||.||+|+|||++.+. ........|.+
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 34888888899999999887654 3356799999999999964 578899999999999999872 23334478999
Q ss_pred cEEEEEEccCCCCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc
Q 002493 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (915)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 220 (915)
.|..+.|+. ...+|++|+.||+++|||+++ ++++..++.|..+|+++.|+|.... .|++++.|..|.+||+..-.
T Consensus 304 DVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 304 DVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred ceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEeeccC
Confidence 999999998 555999999999999999975 4677889999999999999998765 78899999999999985311
Q ss_pred E----------------EEEecCC--ccCeEEEEEeCCCC-EEEEEEcCCcEEEE
Q 002493 221 C----------------VQTLEGH--THNVSAVCFHPELP-IIITGSEDGTVRIW 256 (915)
Q Consensus 221 ~----------------~~~~~~~--~~~i~~i~~~~~~~-~l~~~~~dg~v~iw 256 (915)
- .+-+-.| ...+..+.|+++-+ ++++.+.|| +.||
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 0 1111112 34577889998765 777777787 4444
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.9e-21 Score=189.38 Aligned_cols=275 Identities=19% Similarity=0.271 Sum_probs=207.9
Q ss_pred EEEEcCCCCeEEEEEcC---Cc--EEEEECCCCceeEEEEec----CCCEEEEEEeC-------CCCEEEEEeCCCeEEE
Q 002493 20 SVDLHPSEPWILASLYS---GT--VCIWNYQSQTMAKSFEVT----ELPVRSAKFVA-------RKQWVVAGADDMFIRV 83 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~d---g~--v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~g~~dg~i~v 83 (915)
.+..-|+.++++++-.. .. |+||+- ... ..+-.| .....|++|.. .|+++|+|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcC--CCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45566777777777542 22 555553 221 112222 23446777753 3689999999999999
Q ss_pred EECCCCce---------------------eEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecC
Q 002493 84 YNYNTMDK---------------------VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 84 wd~~~~~~---------------------~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
||+.-... -....+|++.|.++.|+.. .+.|++||.|.+|++||+.++ ++..++..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhhc
Confidence 99852110 1112368888999999875 357889999999999999999 888899999
Q ss_pred CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-Cc
Q 002493 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KS 220 (915)
Q Consensus 142 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 220 (915)
...|.++.|+|..+..|++|+.|++|.+.|.+........-...+.|-.+.|.|.... .++++..||+|+-+|+|. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCC
Confidence 9999999999989999999999999999999853332222224678899999998765 788889999999999997 48
Q ss_pred EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc--eeeeeecCCccEEEEEEecCC-CEEEEEecCCeEE
Q 002493 221 CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIM 296 (915)
Q Consensus 221 ~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~g~~dg~v~ 296 (915)
++.+++.|.++|+++++++.-+ ++++++.|+.|++|++..-+ .+.......++..|.++.|+- -.+++|+..+.++
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 9999999999999999998654 78889999999999976433 333333344667888888875 4577788888888
Q ss_pred Eec
Q 002493 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
+|.
T Consensus 445 vwd 447 (463)
T KOG0270|consen 445 VWD 447 (463)
T ss_pred Eee
Confidence 873
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=185.93 Aligned_cols=241 Identities=21% Similarity=0.327 Sum_probs=183.5
Q ss_pred ecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC----------------CceeEEEecCCCCEEEEEEcCC-CCEEE
Q 002493 55 VTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT----------------MDKVKVFEAHTDYIRCVAVHPT-LPYVL 115 (915)
Q Consensus 55 ~~~~~v~~~~~~~~~--~~l~~g~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~-~~~l~ 115 (915)
.|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+.+.++.+|.+.=..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 355666666666654 4455557799999999742 3457778899988899999993 23588
Q ss_pred EEEcCCeEEEEECCCCeeE--EEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEE
Q 002493 116 SSSDDMLIKLWDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCV 191 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~ 191 (915)
+|.--+.|++|...++.-. ...+.+|...|-.++|+|...+.|++|+.||+|+|||++++. +....+.|...|+.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 8888889999998876221 234667999999999999889999999999999999999873 233447899999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCC---CcEEEEecCCccCeEEEEEeCC-CCEEEEEEcCCcEEEEeCCCcce----
Q 002493 192 DYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRIWHATTYRL---- 263 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~v~iwd~~~~~~---- 263 (915)
.|+.... +|++|++||+++|||+++ ++++..++-|..+|++|.|+|. ...|++++.|.+|.|||+..-.-
T Consensus 309 SWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 309 SWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9976654 899999999999999986 6688999999999999999995 45788889999999999863211
Q ss_pred ------------eeeeec--CCccEEEEEEecCCC-EEEEEecCCeEEE
Q 002493 264 ------------ENTLNY--GLERVWAIGYMKSSR-RIVIGYDEGTIMV 297 (915)
Q Consensus 264 ------------~~~~~~--~~~~v~~i~~~~~~~-~l~~g~~dg~v~i 297 (915)
.+-+-. ....+..+.|+++-. +|++.+.+|.-.+
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 011111 224566788888743 4555556665544
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=178.88 Aligned_cols=272 Identities=19% Similarity=0.291 Sum_probs=214.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCC------------ceeEEEEe-cCCCEEEEEEe-------CCCCEEEEEeC
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQ------------TMAKSFEV-TELPVRSAKFV-------ARKQWVVAGAD 77 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~------------~~~~~~~~-~~~~v~~~~~~-------~~~~~l~~g~~ 77 (915)
.+.+.|||||..|++-+.|..+.+|++... +...++.. ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999997531 11112222 23467777775 57788999999
Q ss_pred CCeEEEEECCCCceeEEEec--CCC---CEEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCeeEEE--E----eecCCccE
Q 002493 78 DMFIRVYNYNTMDKVKVFEA--HTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDW-EKGWMCTQ--I----FEGHSHYV 145 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~--~~~---~i~~l~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~--~----~~~~~~~v 145 (915)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|+.|. ...|+++|+ +.++.+.. + ..+..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999988777653 333 346899999999988775 468999999 44432221 1 12346778
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCC-CcEEE
Q 002493 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-KSCVQ 223 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~ 223 (915)
.+++|+|.+...+++|+...++-+|.-....+...+-+|.++|+.++|.++|++ |++|. .+..|..||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~--lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNK--LFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCe--ecccccCCCeEEEEeehhccchhh
Confidence 999999988889999999999999998889999999999999999999999984 66665 478999999986 44566
Q ss_pred EecCCcc-CeE--EEEEeCCCCEEEEEEcCCcEEEEeCCC-cceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002493 224 TLEGHTH-NVS--AVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 224 ~~~~~~~-~i~--~i~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~d 292 (915)
.+..|.. .-. -....|.+++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++|+++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 6666544 222 345578999999999999999999988 66677888888899999999998877776643
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.4e-20 Score=191.64 Aligned_cols=243 Identities=20% Similarity=0.266 Sum_probs=197.5
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEE
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWD 127 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd 127 (915)
-..+.+|.+.|+|+...|.|.+|++|+.||+|+||.+.||.++..+.- .+.|.|++|+|.+. .|+++... .+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 345778999999999999999999999999999999999999998874 55899999999765 34443332 233333
Q ss_pred ---------------------------------CCC---CeeEEEEeecCCccEEEEEEccCCCCEEEEEECC---CcEE
Q 002493 128 ---------------------------------WEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD---RTIK 168 (915)
Q Consensus 128 ---------------------------------~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~ 168 (915)
-.. ...-..+...|...|.++.|+. .|.+|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence 220 1111234456888999999998 89999987654 5689
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002493 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
|.++........|....+.|.++.|+|... +|++++ ...|+|||+.....+..+......|++++.+|.|.-|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999987776666666778899999999876 676665 46899999988777777777778899999999999999999
Q ss_pred cCCcEEEEeCCCc-ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 249 EDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 249 ~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.|+.+..||+.-. ++.+++..|...+++++|++.-.++++|++||++++.
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999998754 4678888999999999999999999999999999984
No 161
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.9e-18 Score=184.55 Aligned_cols=407 Identities=16% Similarity=0.226 Sum_probs=271.0
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECC
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYN 87 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~g~~dg~i~vwd~~ 87 (915)
+.|....-..-.||+|+++++... +..|.||...++.++..+..|..++..+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444444557899999887765 56899999999999999999999999999988654 67789999999999998
Q ss_pred CCceeEEEecCCCC----------------------------------------------------------EEEEEEcC
Q 002493 88 TMDKVKVFEAHTDY----------------------------------------------------------IRCVAVHP 109 (915)
Q Consensus 88 ~~~~~~~~~~~~~~----------------------------------------------------------i~~l~~s~ 109 (915)
.+..++++..+... -.++.+++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 87776666432110 11223333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeeEE---EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC----CCCceEEe
Q 002493 110 TLPYVLSSSDDMLIKLWDWEKGWMCT---QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----PDPNFTLD 182 (915)
Q Consensus 110 ~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~ 182 (915)
.|.+...... ..+.+|......... ..-..|...+++.+++| .++++++|..||.|.+|.--. ......+.
T Consensus 171 ~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 171 SGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 3333333322 346666666532111 11224666689999999 999999999999999996433 12456677
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc
Q 002493 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
.|...|++++|+++|. +|++|+..|.+.+|.+.+++ .+-+....++|..+.++||+.+.+....|+.|.+....+..
T Consensus 249 WH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ecccccceeEEecCCc--eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 8999999999999998 89999999999999999988 44555578899999999999999999999999999876655
Q ss_pred eeeeeecC-----------CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecc
Q 002493 263 LENTLNYG-----------LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (915)
Q Consensus 263 ~~~~~~~~-----------~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 331 (915)
...++.+. .+-.+.++++|..+.++..+..|.|.++..-.. ..+..+.+.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td----------------~~i~~~~v~--- 386 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD----------------STIYKLQVC--- 386 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc----------------ceeeeEEEE---
Confidence 44433322 233567889998888888899999988521111 111111110
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---------CC--cEEEEEee----ccc------ccCcc
Q 002493 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---------DG--EYIIYTAL----AWR------NRSFG 390 (915)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---------~~--~~~i~~~~----~~~------~~~~~ 390 (915)
..+..+|.. .....++.++.+..|.++++.. +| .+.+|... .|. ..+..
T Consensus 387 -~~n~~~~~~---------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 387 -DENYSDGDV---------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred -eecccCCcc---------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 011223331 2223456677777788887663 22 23445322 111 11222
Q ss_pred ceeEEEEe-c-CCcEEEEec-CCeEEEeccCcc-------------------ceeeeecCcccceeecCcEEEEeeCCeE
Q 002493 391 SALEFVWS-S-DGEYAVRES-SSKIKIFSKNFQ-------------------EKRSVRPTFSAERIYGGTLLAMCSNDFI 448 (915)
Q Consensus 391 ~~~~~~~s-~-~~~~l~~~~-~~~v~v~~~~~~-------------------~~~~~~~~~s~~~i~~g~~La~~~~~~v 448 (915)
.....++. + ....+++.+ ++.++||-.+.. ......+.|+.| |.+|+++.+++|
T Consensus 457 ~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~s~~~~I 532 (792)
T KOG1963|consen 457 AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAVSFDDTI 532 (792)
T ss_pred eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC----CcEEEEecCCEE
Confidence 22333333 2 222555554 899999975211 001111267777 899999999999
Q ss_pred EEEeccCC
Q 002493 449 CFYDWAEC 456 (915)
Q Consensus 449 ~~~d~~~~ 456 (915)
.+||..+.
T Consensus 533 tiwd~~~~ 540 (792)
T KOG1963|consen 533 TIWDYDTK 540 (792)
T ss_pred EEecCCCh
Confidence 99999884
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.8e-20 Score=177.84 Aligned_cols=282 Identities=21% Similarity=0.399 Sum_probs=218.0
Q ss_pred hcccCCCCEEEEEEcC----CCC-eEEEEEcCCcEEEEECCCCceeEEEE-----ecCCCEEEEEEeCC----CCEEEEE
Q 002493 10 KLAQRSERVKSVDLHP----SEP-WILASLYSGTVCIWNYQSQTMAKSFE-----VTELPVRSAKFVAR----KQWVVAG 75 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp----~~~-~la~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~----~~~l~~g 75 (915)
....|..+|..++|++ +.+ .+|+.+ ...+.||.....--++.++ .|+.....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999996 333 455554 5689999987654333332 25667888899764 4579999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEee---cCCccEEEEEEc
Q 002493 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFN 151 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~ 151 (915)
+.-|.|+|.|+.+++....+.+|...|..+.++|+. ++++++|.|..|++|++++. .+..++. +|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEc
Confidence 999999999999999999999999999999999976 57889999999999999998 7777764 699999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC---------------------------ce-EEecCCCCeeEEEEEeCCCcCEEE
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDP---------------------------NF-TLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------~~-~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
+ ++..+++++.|.+|++|++...+. .+ +-..|...|.|+.|.- + +++
T Consensus 191 ~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d--~il 265 (385)
T KOG1034|consen 191 L-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D--FIL 265 (385)
T ss_pred C-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h--hee
Confidence 9 888999999999999999973210 00 1234666777888753 3 799
Q ss_pred EEeCCCeEEEEEC-CCCc-------------EEEEecCCccCeEEEE--EeCCCCEEEEEEcCCcEEEEeCCCccee--e
Q 002493 204 TGSDDHTAKVWDY-QTKS-------------CVQTLEGHTHNVSAVC--FHPELPIIITGSEDGTVRIWHATTYRLE--N 265 (915)
Q Consensus 204 ~~~~dg~i~iwd~-~~~~-------------~~~~~~~~~~~i~~i~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~ 265 (915)
+-+.++.|..|.. +-++ .+..+.-....|+-+. |.|-++.|+.|...|.|.+||+.+.... .
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9999999999987 2111 1233333444566554 5667789999999999999999876652 2
Q ss_pred ee--ecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 266 TL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 266 ~~--~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
++ ......|...+|+.||..|+..++|++|.-|
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 22 2234679999999999999999999999776
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=5.9e-22 Score=219.61 Aligned_cols=281 Identities=17% Similarity=0.293 Sum_probs=221.0
Q ss_pred CEEEEEEcCCCC-eEEEEE----------cCCcEEEEECC--CCc----eeEEEEecCCCEEEEEEeCCCCE----EEEE
Q 002493 17 RVKSVDLHPSEP-WILASL----------YSGTVCIWNYQ--SQT----MAKSFEVTELPVRSAKFVARKQW----VVAG 75 (915)
Q Consensus 17 ~v~~~~~sp~~~-~la~~~----------~dg~v~iwd~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~g 75 (915)
+--.++|||+++ ++|+|. .+.++-||.+. +.. .+-.+. ...+-+.++|.+.|.. |+.|
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc
Confidence 345689999997 666653 24455666543 222 222222 3456789999998776 8888
Q ss_pred eCCCeEEEEECCCC------ceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEE-eecCCccEEE
Q 002493 76 ADDMFIRVYNYNTM------DKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQ 147 (915)
Q Consensus 76 ~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~ 147 (915)
..||.|.+||...- ..+.....|.+.|..+.|++.+. .|++|+.||.|.|||+.+....... -......|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 89999999997652 23456678999999999999766 9999999999999999875322222 1224567999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC--CeeEEEEEeCCCcCEEEEEeCC--CeEEEEECCC-CcEE
Q 002493 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD--HTAKVWDYQT-KSCV 222 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~-~~~~ 222 (915)
++|+.+....|++++.+|.+.|||++..+++..+..+.. .+..+.|+|+....++++..+| -.|.+||+|. ..++
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 999997888999999999999999999988887765544 4678999999876444444433 4699999986 4577
Q ss_pred EEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEEecCCeEEEe
Q 002493 223 QTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVK 298 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~g~~dg~v~i~ 298 (915)
+++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+|.|.|+
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 8889999999999999977 7999999999999999999999999998888999999999876 78889999999884
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=3.4e-20 Score=192.22 Aligned_cols=277 Identities=20% Similarity=0.260 Sum_probs=204.3
Q ss_pred EEEEcC---CCCeEEEEEcCCcEEEEECCCCce------eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002493 20 SVDLHP---SEPWILASLYSGTVCIWNYQSQTM------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 20 ~~~~sp---~~~~la~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
+..|++ ....||++..+|.|.++|...... ++.+..|...|..+.|.|....|++++.|.++++||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 334788999999999999766433 24556799999999999977789999999999999999998
Q ss_pred eeEE--EecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCee------EEEE--------------------eecC
Q 002493 91 KVKV--FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM------CTQI--------------------FEGH 141 (915)
Q Consensus 91 ~~~~--~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~~--------------------~~~~ 141 (915)
.... +.+|...+.+++|.|+++ .+++|+.||.|.|||++-... +... ...+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999775 577999999999999864310 0000 1112
Q ss_pred Ccc----EEEEEEccCCCCEEEEEEC-CCcEEEEECCCCCCceEE--------ecC---CCCeeEEEEEeCCCcCEEEEE
Q 002493 142 SHY----VMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL--------DAH---QKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 142 ~~~----v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~ 205 (915)
... |+.+.|- |...|++++. |+.|+|||++........ ..+ ..++.++.. +..+.+|++.
T Consensus 214 s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssGt~L~As 289 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFAS 289 (720)
T ss_pred cCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCCCeEEEE
Confidence 223 4445444 7889999888 999999999876543222 122 223445544 4444488888
Q ss_pred eCCCeEEEEECCCC--cEEEEecCCccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEe
Q 002493 206 SDDHTAKVWDYQTK--SCVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (915)
Q Consensus 206 ~~dg~i~iwd~~~~--~~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 280 (915)
+.|+.|++|++.+- .++..+.++... -..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 88999999999763 244444443221 1233578999999999999999999998766 345667788889999998
Q ss_pred cCC-CEEEEEecCCeEEEecC
Q 002493 281 KSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 281 ~~~-~~l~~g~~dg~v~i~~~ 300 (915)
|.. .-++++++|..+.+|..
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cccCCCceeeccCcceEEEec
Confidence 862 34666699999999853
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-20 Score=185.90 Aligned_cols=264 Identities=17% Similarity=0.266 Sum_probs=207.3
Q ss_pred EEEcCCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEE--eCCCeEEEEECCC--CceeEEEecCCCCEEEE
Q 002493 32 ASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAG--ADDMFIRVYNYNT--MDKVKVFEAHTDYIRCV 105 (915)
Q Consensus 32 ~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g--~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l 105 (915)
+++....++|||....+....+..|. ..+.++.|+.+.. |+++ +.|..+++|.-.. ++....-+...+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33445579999998776665555443 3488999987765 4444 4578899997432 12222222223345666
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC-
Q 002493 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH- 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 184 (915)
+......|+++|+..+.|+|||++.. .+.+.+.+|...|+++.++- ...+|++++..|.|.+..+.++.....+...
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 66666789999999999999999965 78889999999999999998 7789999999999999999988777777644
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc
Q 002493 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
...|.-+.|++.... +|.+++++|.|.+||+....++..+ ..|..+...|||+|... +|++.+.|..|.+||....+
T Consensus 164 gqsvRll~ys~skr~-lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRF-LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCeEEEeecccccce-eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 345668999988765 7889999999999999877776554 46889999999999654 77889999999999999877
Q ss_pred eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002493 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
....+.+. .+..+++|+++|.+|++|+..|.++.+..
T Consensus 243 s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 243 STDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ccceeeec-CCcceeeecCCceEEEeecCCceEEEEec
Confidence 77777655 68899999999999999999999988643
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=5.1e-19 Score=174.24 Aligned_cols=317 Identities=18% Similarity=0.314 Sum_probs=208.4
Q ss_pred CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC---------ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002493 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 142 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
..++.++.|.+.+.+.+++|+.|..|++|-+..+.+ ...+..|...|+++.|+|+|+ ++++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 356899999986667999999999999998865432 234567999999999999998 899999999999
Q ss_pred EEECC--------C--------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEE
Q 002493 213 VWDYQ--------T--------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 213 iwd~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|-.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..|...+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 1234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002493 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|.|-++++++-+.|...+.......++... ... .+..... ...++-....+..-++...+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~--------~~~-~~m~~~~--------~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR--------HGL-DIMPAKA--------FNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeee--------eee-eEeeecc--------cCCCCcceeeeeecCchhhhh
Confidence 99999999999987776443321111111100 000 0000000 011111111122223445567
Q ss_pred ceEEECCCCCEEEEEc-----CCcEEEEEeecccccCc-cceeEEEEecC-CcE-EEEecCCeEEEeccCccceeeeecC
Q 002493 357 QSLKHNPNGRFVVVCG-----DGEYIIYTALAWRNRSF-GSALEFVWSSD-GEY-AVRESSSKIKIFSKNFQEKRSVRPT 428 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-----~~~~~i~~~~~~~~~~~-~~~~~~~~s~~-~~~-l~~~~~~~v~v~~~~~~~~~~~~~~ 428 (915)
+.++|+|||.+|++.. .+.+..........+.. .++.. .|. ++. +++... -| .|.+ +.......-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~---lp~~~k~~lavr~~-pV-y~el--rp~~~~~~~ 306 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR---LPSPKKPALAVRFS-PV-YYEL--RPLSSEKFL 306 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee---cCCCCcceEEEEee-ee-EEEe--ccccccccc
Confidence 8899999999988653 33332222111111110 11111 111 111 111110 01 0100 000000000
Q ss_pred c-ccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE----ccccEEEEcCCCCEEEEEeCCeEEE
Q 002493 429 F-SAERIYGGTLLAMCSNDFICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDTSFYI 488 (915)
Q Consensus 429 ~-s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~~~~~~ 488 (915)
| -| .+-.+|+++.+.|++||.++..++.... ..++.++||+||..|++.+-|+++-
T Consensus 307 ~~lp----yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 307 FVLP----YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccc----cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 0 11 2567888999999999999988877665 4899999999999999999999884
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.2e-20 Score=193.46 Aligned_cols=264 Identities=21% Similarity=0.301 Sum_probs=201.7
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC--------CceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002493 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------QTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~ 76 (915)
+.++.++..|.+.|+.++|+|..+.|++++.+|.+.+|+++. .+.+.+|.+|.+||.|++..+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345567888999999999999999999999999999999932 256788999999999999999999999999
Q ss_pred CCCeEEEEECCC----------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEE
Q 002493 77 DDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM 146 (915)
Q Consensus 77 ~dg~i~vwd~~~----------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 146 (915)
.||+|+.|++.. ......+.+|.+.++.+++|+...+|++++.||+++.|+......+........+...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 999999996542 1234567899999999999999999999999999999998765332221122233445
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec-------CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002493 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
++.+-.......++...-+.-.++++........+.. ....++.+.++|..+ +.+++..|+.|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC--eeEecccCCceeccccccc
Confidence 6665431222333332233333333333333333221 124567788888775 8999999999999999999
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002493 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 220 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.++.....|...++++++.|+|.+|++|+.||.+++|.+....++.....|
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999999999999999999999998766655544433
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=7.3e-17 Score=181.74 Aligned_cols=285 Identities=28% Similarity=0.486 Sum_probs=231.5
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-eeEEEEecCC-CEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVTEL-PVRSAKF-VARKQ-WVVAGAD-DMFIRVY 84 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~g~~-dg~i~vw 84 (915)
.+..|...+.++.+++.+..++.++.++.+.+|+...+. .+..+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999988886 6666766443 7777877 78887 4555444 9999999
Q ss_pred ECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCC-EEEEE
Q 002493 85 NYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASA 161 (915)
Q Consensus 85 d~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~ 161 (915)
+..+ ......+..|...|..++|+|++..+++++. |+.+++|+...+ .....+.+|...+.++.|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9988 7888889999999999999999998888885 999999999985 56677777999999999998 665 55555
Q ss_pred ECCCcEEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeC
Q 002493 162 SLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~ 239 (915)
+.|+.|++||...+.... .+..|.... ...|++++. ++++++.++.+++|+.+.... +..+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 899999999988766666 577777765 447888884 788999999999999987664 455567888999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeee--cCCccEEEEEEecCCCEEEEE-ecCCeEEEec
Q 002493 240 ELPIIITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIG-YDEGTIMVKI 299 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~g-~~dg~v~i~~ 299 (915)
++..+++++.|+.+++|+..+........ .+...+..+.|.+++..++.+ ..++.+.+|.
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 88888889999999999988887666665 565568899983332556655 5667776653
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=171.16 Aligned_cols=383 Identities=14% Similarity=0.191 Sum_probs=238.1
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeEEEecC
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
-++|||+|+++|+.+.. .+.|-|..+-+..+.+.. -..|.-+.|..+.-+++++ ..++.|.+|++...+....+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999999855 788999888766655543 3457789999998887766 56889999999988888888888
Q ss_pred CCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC---C
Q 002493 99 TDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~ 174 (915)
..++.+++|||+|+.|+ +...+-.|.+|.+.+..... +.-....+..++|+| ++++.+.++.-...-.+.+. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 89999999999996555 66678999999998862222 222234468899999 88888887753221111111 1
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002493 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
-.....+....-..+.+.|+|+|+ .++ +||.--.-.+.... -.-.+..++|+|.+++|++|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~la---------Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--WLA---------VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--EEE---------Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhh
Confidence 112233344445567889999887 343 45532111111121 224578899999999999999999998
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe-cCCeEE-EecCCCcceeEecCCCcEEEEeeCceEEEEeeeccc
Q 002493 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTIM-VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~-~dg~v~-i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 332 (915)
+.+--+.+.. +.++-.++ .|.+.. +...... +.
T Consensus 236 vlnh~tWk~f------------------~eflhl~s~~dp~~~~~~ke~~~------------------~~--------- 270 (447)
T KOG4497|consen 236 VLNHFTWKPF------------------GEFLHLCSYHDPTLHLLEKETFS------------------IV--------- 270 (447)
T ss_pred hhceeeeeeh------------------hhhccchhccCchhhhhhhhhcc------------------hh---------
Confidence 8764444433 33222111 111111 1000000 00
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEE----------Eee--cccccCccceeEEEEecC
Q 002493 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIY----------TAL--AWRNRSFGSALEFVWSSD 400 (915)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~----------~~~--~~~~~~~~~~~~~~~s~~ 400 (915)
.....++.|.|..--.-.+ ...-.+| ..+ ..++...-.+--++||+|
T Consensus 271 --------------------ql~~~cLsf~p~~~~a~~~-~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 271 --------------------QLLHHCLSFTPTDLEAHIW-EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred --------------------hhcccccccCCCccccCcc-ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 0000112222211000000 0000011 001 112233445677899999
Q ss_pred CcEEEEecC---CeEEEeccCccceee-------eec-CcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE-c-cc
Q 002493 401 GEYAVRESS---SKIKIFSKNFQEKRS-------VRP-TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID-V-TV 466 (915)
Q Consensus 401 ~~~l~~~~~---~~v~v~~~~~~~~~~-------~~~-~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~-~-~i 466 (915)
..|+++..| +.+.+||+....... ++. .+.|. ...|+++... .+++|.......+..-. | .|
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~----~prL~vctg~srLY~W~psg~~~V~vP~~GF~i 405 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNI 405 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC----CceEEEEcCCceEEEEcCCCceEEecCCCCcee
Confidence 999998885 578999976433222 111 45665 6677777777 99999877655555433 2 79
Q ss_pred cEEEEcCCCCEEEEEeCCeEEEE
Q 002493 467 KNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 467 ~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
..+.|..+|..++..++|.+++-
T Consensus 406 ~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred eeEEecCCCcEEEEEcCCceEEE
Confidence 99999999999999999988764
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-17 Score=178.50 Aligned_cols=416 Identities=16% Similarity=0.216 Sum_probs=274.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEE-----------------
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF----------------- 65 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~----------------- 65 (915)
+..+.|.+|..+++.+.+.|... ++.+++.+|.|++||...+.+++++..+- ++..+.+
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~ 126 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED 126 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc
Confidence 45568899999999999998665 66788899999999999998888776322 2222211
Q ss_pred ------------------------------------------eCCCCEEEEEeCCCeEEEEECCCCceeEE----EecCC
Q 002493 66 ------------------------------------------VARKQWVVAGADDMFIRVYNYNTMDKVKV----FEAHT 99 (915)
Q Consensus 66 ------------------------------------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~----~~~~~ 99 (915)
++.|.+... ..+..+.+|+..+...... -..|.
T Consensus 127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred ceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhc
Confidence 111111111 1223455666555331111 12466
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC
Q 002493 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
-.++|.++||+++++++|..||.|.+|.--. .....+.+.=|...|+++.|++ ++.+|++|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC
Confidence 6689999999999999999999999996433 2233456667888999999999 99999999999999999999988
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-----------ccCeEEEEEeCCCCEEE
Q 002493 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-----------THNVSAVCFHPELPIII 245 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~ 245 (915)
.+-++.-..+|..+.++|+++ +.+....|+.|.+....+.....++.+. .+-.+.++++|.-+.++
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -cccccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 444566788999999999988 6778888999999987655443333321 23367789999777788
Q ss_pred EEEcCCcEEEEeCCCcceeeeeec-----CC------ccEEEEEEecCCCEEEEEec--------CCeEEEecCCCccee
Q 002493 246 TGSEDGTVRIWHATTYRLENTLNY-----GL------ERVWAIGYMKSSRRIVIGYD--------EGTIMVKIGREEPVA 306 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~-----~~------~~v~~i~~~~~~~~l~~g~~--------dg~v~i~~~~~~~~~ 306 (915)
-.+..|.|.+||+.+.+.+..+.. +. -.+++++.+..|++++++-. +|.+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~---------- 431 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS---------- 431 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE----------
Confidence 888999999999987776544431 11 23556666666777776432 12222
Q ss_pred EecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEE-cCCcEEEEEeecc
Q 002493 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVC-GDGEYIIYTALAW 384 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~-~~~~~~i~~~~~~ 384 (915)
..+|......+.+.+.+... . ++....+..+..+|..+ ..+++ .+|.+.+|-....
T Consensus 432 ------LKFW~~n~~~kt~~L~T~I~---~-------------PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 432 ------LKFWQYNPNSKTFILNTKIN---N-------------PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ------EEEEEEcCCcceeEEEEEEe---c-------------CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 23455554444444433211 2 22233333444444443 45555 5999999976432
Q ss_pred cc----------c-----CccceeEEEEecCCcEEEEecCCeEEEeccCcc-ceeeeec---------CcccceeecCcE
Q 002493 385 RN----------R-----SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVRP---------TFSAERIYGGTL 439 (915)
Q Consensus 385 ~~----------~-----~~~~~~~~~~s~~~~~l~~~~~~~v~v~~~~~~-~~~~~~~---------~~s~~~i~~g~~ 439 (915)
.+ + +..++..++||.||..++.+.+++|.+||...+ +...... .|..... ....
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 568 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQ-NDGA 568 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccc-cccc
Confidence 21 1 234678899999999999999999999996542 1111110 1111100 1223
Q ss_pred EEEeeCCeEEEEeccCCcEEE
Q 002493 440 LAMCSNDFICFYDWAECRLIR 460 (915)
Q Consensus 440 La~~~~~~v~~~d~~~~~~i~ 460 (915)
+..++...+.+|++-++.+..
T Consensus 569 ~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 569 LVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred eeeccCceEehHhhhhhheec
Confidence 444555599999999888776
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=173.70 Aligned_cols=271 Identities=15% Similarity=0.222 Sum_probs=205.4
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceeEEE--ecCC-CCE
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVYNYNTMDKVKVF--EAHT-DYI 102 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~-~~i 102 (915)
..+|++..+|.|++||..+++.+..+++++..+..++|.. ....+.+++.||.|++||+++......+ ..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 4677899999999999999987665444 3444 467
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEECCCCee-EEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC-
Q 002493 103 RCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD- 176 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~- 176 (915)
.|++.+-.++.+++|+. +-.|.+||++...+ +......|...|++++|+|.+.++|++||.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78888777888888754 67899999998756 5566778999999999999999999999999999999997643
Q ss_pred --CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc------------cCeEEEEEeC-CC
Q 002493 177 --PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------HNVSAVCFHP-EL 241 (915)
Q Consensus 177 --~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~i~~~~-~~ 241 (915)
.+...-.+...|.++.|..++-. -|.+-+...+..+|++..+.+...+.... ..+... .+| +.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc
Confidence 22222346778999999988743 37778888999999999887655443211 111111 223 33
Q ss_pred CEEEEEEc-CCcEEEEeCC---Ccc---eeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002493 242 PIIITGSE-DGTVRIWHAT---TYR---LENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 242 ~~l~~~~~-dg~v~iwd~~---~~~---~~~~~~~-~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
..++.++. -|...++-+. ++. .+..+.+ |..-|.++.|...+..+.+|+.||.+.+|-.
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44554444 4555555433 333 3344554 4566888999999999999999999999964
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-20 Score=209.05 Aligned_cols=246 Identities=19% Similarity=0.303 Sum_probs=202.9
Q ss_pred CCCEEEEEEcCCCCe----EEEEEcCCcEEEEECCCC------ceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002493 15 SERVKSVDLHPSEPW----ILASLYSGTVCIWNYQSQ------TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~----la~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~v 83 (915)
..+-..++|.+.|.. ||.|+.||.|.+||...- ..+.+...|.++|+.+.|++.+. +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456788999998775 888889999999997652 34566778999999999999765 9999999999999
Q ss_pred EECCCCceeEEEe--cCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCC--ccEEEEEEccCCCCEE
Q 002493 84 YNYNTMDKVKVFE--AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l 158 (915)
||++..+...... ...+.|.+++|+..- ..|++++.+|.+.|||++..+.++. +..+. ..+..+.|+|+....+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-LSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc-cccCCCccceeeeeeCCCCceee
Confidence 9998755544442 245789999999854 4677889999999999998743333 33332 3477899999888888
Q ss_pred EEEECCC---cEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEE
Q 002493 159 ASASLDR---TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 234 (915)
++++.|. .|.+||++.. .+.+.+.+|..+|.++.|++.+.. ++++++.|+.|.+|+.++++.+..+......+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999764 466777899999999999998754 8999999999999999999999999988889999
Q ss_pred EEEeCCCC-EEEEEEcCCcEEEEeCCCcc
Q 002493 235 VCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 235 i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
+.|+|..+ .+++.+-||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999877 78888999999999987543
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=184.56 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=93.9
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH---cCCHHH
Q 002493 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM---LGKLED 741 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~g~~~~ 741 (915)
..++.+|+++|++.+..|+++.|...|..++||-.+.++.+..|+ +.+.+++|.+.|+-....+++.. .|++-+
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk---~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK---TDKAARIAEESGDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC---chHHHHHHHhcccHHHHHHHHHHhhhhHHHHH
Confidence 345779999999999999999999999999999999999999999 88888999999998888877554 489999
Q ss_pred HHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002493 742 CLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 742 a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~ 782 (915)
|+.+|.++.-+.-|+.+++.+.... ++|.-.|....
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d-----~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKD-----RLANLALMSGG 1021 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHhhcCc
Confidence 9999999999999999999986522 23544555443
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=6.5e-19 Score=173.49 Aligned_cols=279 Identities=20% Similarity=0.269 Sum_probs=209.3
Q ss_pred CCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 14 RSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 14 h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
...+|.++.|+++.. .||+|+.|..|+||-+..+. ....+..|...|+++.|+|+|..|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999877 99999999999999876432 23346679999999999999999999999999999
Q ss_pred EECC--------C--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEE
Q 002493 84 YNYN--------T--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 84 wd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 147 (915)
|-.. + ....+.+.+|...|..++|+|++.++++++.|..+++||+..+ .....+..|.+.+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccce
Confidence 9765 2 1234556789999999999999999999999999999999998 888899999999999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe-------------------cCC----CCeeEEEEEeCCCcCEEEE
Q 002493 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-------------------AHQ----KGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~~----~~v~~~~~~~~~~~~~l~~ 204 (915)
++|.| -++++++-+.|...+.+++.....+.... .|. .-...++|+|+|. ++++
T Consensus 171 vawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~--llvt 247 (434)
T KOG1009|consen 171 VAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS--LLVT 247 (434)
T ss_pred eecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc--EEEc
Confidence 99999 78889988888877777664432221110 011 1234677888886 5665
Q ss_pred EeC----C-----CeEEEEECCC-CcEEEEecCCccCeEEEEEeC------------------CCCEEEEEEcCCcEEEE
Q 002493 205 GSD----D-----HTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP------------------ELPIIITGSEDGTVRIW 256 (915)
Q Consensus 205 ~~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~------------------~~~~l~~~~~dg~v~iw 256 (915)
... . +..++++-.. .++...+.....+...+.|+| -+-.+++++. ..|.+|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvy 326 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVY 326 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEe
Confidence 431 1 2234554332 334555555555555555554 1224555554 489999
Q ss_pred eCCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 257 HATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
|..+..++..+ +.|-..++.++|+++|..+++.+.||...+
T Consensus 327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 98887765443 456788999999999999999999998876
No 175
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=8.7e-19 Score=164.86 Aligned_cols=243 Identities=20% Similarity=0.340 Sum_probs=194.9
Q ss_pred ccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECC
Q 002493 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 12 ~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~g~~dg~i~vwd~~ 87 (915)
.+|.-.|.++-|-| |...+.+++-|.+++|||..+-+....|+ .++.|.+-+|+|- ..++|+|..+-.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 45567778889999999999988888887 5678999999984 4578888899999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeeEEEEe--------------ecCCccEEEEEEcc
Q 002493 88 TMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIF--------------EGHSHYVMQVTFNP 152 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~v~~~~~~p 152 (915)
+|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++...-+...+ ..|.+.+..++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999998876 5799999999999998542233322 35677899999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCCCe-eEEEE-EeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 002493 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGV-NCVDY-FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v-~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (915)
++.++++++.|..+++|+..+|.....-. .|...+ ..+.. +-+.+ .++---.++.+.++++-.+..+..+..
T Consensus 257 -d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~--vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 257 -DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSD--VFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred -cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccc--eEEEEecCCeEEEEEccCceEEEeeec
Confidence 89999999999999999998876432211 111110 01111 11222 344445568999999999999999999
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002493 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 228 ~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
|...|.+..+-|+-+...+|..|+.+..|..
T Consensus 334 h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 HLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999999999986
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.9e-19 Score=170.96 Aligned_cols=243 Identities=21% Similarity=0.276 Sum_probs=196.6
Q ss_pred cCCCCEEEEEEcCC----CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002493 13 QRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~v~~~~~sp~----~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~ 87 (915)
.|.+.-..++|+-+ .++||+|+.-|.|+|.|+.+++..+.+.+|...|+.+.+.|+. ++++++|.|..|++||+.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888888764 4689999999999999999999999999999999999999976 678899999999999999
Q ss_pred CCceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee------------------------EE---EE
Q 002493 88 TMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------------------------CT---QI 137 (915)
Q Consensus 88 ~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~---~~ 137 (915)
++.++..|. +|.+.|.++.|+++|.+|++|+.|.+|++|++..... .. .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999998874 7999999999999999999999999999999873210 00 01
Q ss_pred eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC-CC-------------CceEEecCCCCeeEEEEEeCCCcCEEE
Q 002493 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PD-------------PNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
..-|..+|-|+.|- ++++++-+.++.|..|.... .+ ....+.-....+.-+.|.-+.-+..|+
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 23477778888885 58899989999999998721 11 122334455667778877776666899
Q ss_pred EEeCCCeEEEEECCCCcEE--EEe--cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002493 204 TGSDDHTAKVWDYQTKSCV--QTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
.|...|.|.+||++...+. .++ ......|...+|+.||.+|+..+.|++|.-||.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999876552 111 123456889999999999999999999999984
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=163.80 Aligned_cols=268 Identities=23% Similarity=0.325 Sum_probs=201.8
Q ss_pred CCeEEEEEc----CCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEE-EEeCC-------CeEEEEECCCC--
Q 002493 27 EPWILASLY----SGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVV-AGADD-------MFIRVYNYNTM-- 89 (915)
Q Consensus 27 ~~~la~~~~----dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d-------g~i~vwd~~~~-- 89 (915)
.-.+++|.. ++.|++.++..+. ..+.|..|.+.|..++-+|..+.|+ ++..+ -.+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 345666654 6788888776542 2245667889999999999665544 44331 25779987532
Q ss_pred -------ceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEcc-CCC
Q 002493 90 -------DKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNP-KDT 155 (915)
Q Consensus 90 -------~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p-~~~ 155 (915)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......+ ..+....++-+|+| .++
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 2333443 4556899999999999888776 7789999999775533322 23566788999999 567
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeE
Q 002493 156 NTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVS 233 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~ 233 (915)
+.+++. .|+++..||+++.+....+ ..|...|..+.|+|+... +|+++++||.|+|||.+. ..+++++.+|...|+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 777765 5899999999988776665 468888999999998765 899999999999999986 558999999999999
Q ss_pred EEEEeCC-CCEEEEEEcCCcEEEEeCCCc-----------------------------ceeeeeecCCccEEEEEEecCC
Q 002493 234 AVCFHPE-LPIIITGSEDGTVRIWHATTY-----------------------------RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 234 ~i~~~~~-~~~l~~~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
++.|+|. .++|++||.|..|.+|....- ..+.++..|...|++++||.-.
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 9999994 468899999999999954311 1233566778899999999876
Q ss_pred CE-EEEEecCCeEEE
Q 002493 284 RR-IVIGYDEGTIMV 297 (915)
Q Consensus 284 ~~-l~~g~~dg~v~i 297 (915)
.+ +|+-+.||.+.|
T Consensus 343 PWiFASLSYDGRviI 357 (370)
T KOG1007|consen 343 PWIFASLSYDGRVII 357 (370)
T ss_pred CeeEEEeccCceEEe
Confidence 65 455788888887
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=9.1e-19 Score=164.40 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=197.2
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcC--------CcEEEEECCCC---------ceeEEEE-ecCCCEEEEEEeCC
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYS--------GTVCIWNYQSQ---------TMAKSFE-VTELPVRSAKFVAR 68 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~d--------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~ 68 (915)
+.+.|..|.+.|..++-+|..+.|++..++ -.+.||.+... +++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 456778899999999999977665554443 24789987643 2233333 34568999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-eEEEe-----cCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeec
Q 002493 69 KQWVVAGADDMFIRVYNYNTMDK-VKVFE-----AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+..+++-. |..|.+|++..+.. +..+. .|....++-+|+| +++.+++. .|+++..||+++......+-..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99999876 78899999987766 33332 3556788899999 66666665 4689999999988667777788
Q ss_pred CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002493 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
|...|..+.|+|+...+|++|+.||.|++||.+.. .+++.+.+|..-|.++.|+|..++ ++++|+.|..|.+|....-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecccc
Confidence 99999999999977888999999999999999865 477888999999999999998876 8999999999999965321
Q ss_pred -----------------------------cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCC
Q 002493 220 -----------------------------SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 -----------------------------~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
..+.++..|...|.+++|+.-.+ ++++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345667889999999998777 55677899999886654
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=3.5e-20 Score=197.19 Aligned_cols=282 Identities=19% Similarity=0.261 Sum_probs=231.4
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
+++..+.|.+|-..|.|..|...|.++++|+.|..|+||..+++.++.+..+|.+.|+.++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEccCCCCEE
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l 158 (915)
|.+.++..+..+.+|.+.|++++|+|-. +.+.||++++||.+-. ..... ......+.++.|.. .+..+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~-~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFEN-NGDRF 331 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccc-ccccc
Confidence 9999999999999999999999999954 7789999999998821 11111 11224456666665 67789
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002493 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
++++.|+.-..|.+..- ..+...+.-+..+.+.+ .+.+++-.+..+++|++.+|.....+.+|...+..+.++
T Consensus 332 ~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccccCCcccccchhhHh------hhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 99999988877765321 11222222222222222 267777888899999999999999999999999999999
Q ss_pred CCCC-EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 239 PELP-IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 239 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
|-.+ +..+++.||...|||+..|..++....+...+....||++|+.++...+-|.+.|.-
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 9665 455789999999999999988877666667888999999999999999999998853
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.2e-18 Score=185.43 Aligned_cols=287 Identities=18% Similarity=0.298 Sum_probs=219.1
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec---CCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFVA--RKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~g~~dg~i~vwd 85 (915)
..+.....+.+.|+|-.+.++++...-.|+|||.+.++....|..+ ...|+.+.+.. |...+++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3445556788999999999999988889999999999988877754 45788998876 456899999999999996
Q ss_pred C-CCC----ceeEEEec-------CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccC
Q 002493 86 Y-NTM----DKVKVFEA-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 86 ~-~~~----~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 153 (915)
- .++ +.+..+.+ ..+.=.-+.|.....+|+++++-..|+|||......+..+..+....|+++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 3 332 22222221 11111446788877788888888999999999875555555566677888876655
Q ss_pred CCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCC--eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE--EEec
Q 002493 154 DTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLE 226 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~ 226 (915)
.++.++.|..||.|++||.+...+ +...+.|... |..+.+.+.|-+ -|++|+.+|.|++||++..... .++.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceee
Confidence 689999999999999999976543 4556677766 999999887765 6999999999999999974222 1222
Q ss_pred CC---ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-------CccEEEEEEecCCCEEEEEecCCeEE
Q 002493 227 GH---THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-------LERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 227 ~~---~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~g~~dg~v~ 296 (915)
.| .+.++++..|++.+++++|+. +.|+||++. |+.+..+..+ .+.+.|++|+|-.-.+|+|+.|.+|.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 235899999999999999998 899999976 5554444332 35679999999999999999999999
Q ss_pred EecC
Q 002493 297 VKIG 300 (915)
Q Consensus 297 i~~~ 300 (915)
++..
T Consensus 1377 iYs~ 1380 (1387)
T KOG1517|consen 1377 IYSC 1380 (1387)
T ss_pred Eeec
Confidence 8643
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.5e-18 Score=163.62 Aligned_cols=294 Identities=11% Similarity=0.150 Sum_probs=224.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC------CceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCC
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QTMAKSFE-VTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg 79 (915)
.++.+.+|.+.|.++.||.++++|++|+.|..+++|++.. .+.+.... .|.+.|.|++|.....++.+|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3556789999999999999999999999999999999753 23444333 3568999999999999999999999
Q ss_pred eEEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE--EeecCCccEEEEEEccCCC
Q 002493 80 FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~ 155 (915)
+|..-|+++.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+....... ..........++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999888777652 335899999999999999999999999999986532222 2223455678899999888
Q ss_pred CEEEEEECCCcEEEEECCCCCC-ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecC
Q 002493 156 NTFASASLDRTIKIWNLGSPDP-NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG 227 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~-~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~ 227 (915)
.+|++.+..+-+-+||++.... +... ......-..+.|+|+|++ +++--....-.+||+.+.++ +..+.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe--ehhhhccCCCEEeeeecccceeEecc-
Confidence 9999999999999999976542 2211 111222356789999984 66555555566788876444 33333
Q ss_pred Cc-------cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----------c-------------ceeeeeecCCccEEEE
Q 002493 228 HT-------HNVSAVCFHPELPIIITGSEDGTVRIWHATT----------Y-------------RLENTLNYGLERVWAI 277 (915)
Q Consensus 228 ~~-------~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~----------~-------------~~~~~~~~~~~~v~~i 277 (915)
|. ..+.+++|..+. .+++|+.+-.|++|.+.. | +.+..+.+|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 22 236677887775 499999999999998641 1 1234677888888999
Q ss_pred EEecCCCEEEEEecCCeEEEecCCCcc
Q 002493 278 GYMKSSRRIVIGYDEGTIMVKIGREEP 304 (915)
Q Consensus 278 ~~~~~~~~l~~g~~dg~v~i~~~~~~~ 304 (915)
.|+|...+|++.+-...+.+|.....|
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred eecCCcceEeccchhhheeccccccCC
Confidence 999999999999999999999765554
No 182
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.7e-18 Score=178.23 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=184.6
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE--EEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVARK-QWVVAGADDMFIRVYN 85 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd 85 (915)
+....|-..|..+.|-|....|++++.|.++++||+++.+++.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34567999999999999667888999999999999999888766 88999999999999965 5688999999999999
Q ss_pred CCCCc---------------------------eeEEEecCCCCEEE---EEEcCCCCEEEEEEc-CCeEEEEECCCCeeE
Q 002493 86 YNTMD---------------------------KVKVFEAHTDYIRC---VAVHPTLPYVLSSSD-DMLIKLWDWEKGWMC 134 (915)
Q Consensus 86 ~~~~~---------------------------~~~~~~~~~~~i~~---l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 134 (915)
+.-.. .+..-.++...|.+ +.+..|...|++++. |+.|+|||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 74211 01112234455555 566678888998888 999999999875221
Q ss_pred EE-------EeecC---CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCee--EEEEEeCCCcC
Q 002493 135 TQ-------IFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVN--CVDYFTGGDKP 200 (915)
Q Consensus 135 ~~-------~~~~~---~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~--~~~~~~~~~~~ 200 (915)
.. .+..| ...+.++.... .|.+|++.+.|++|++|++.+-. +...+.++...-. .-..+|++.
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-- 330 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-- 330 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--
Confidence 11 11122 33466777766 56777777779999999997643 3333333322211 123455555
Q ss_pred EEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcc
Q 002493 201 YLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-+++++.|..+++|++.++-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999999999999998754 456677899999999999843 356777999999999986543
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.5e-18 Score=176.51 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=122.2
Q ss_pred cEEEEEEccCCCCEEEEEECCCcEEEEECCCC-------CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.|+.+.|+|-|...|++++.||.|++|.+..+ .+...+..|...|+++.|+|-... +|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence 47889999999999999999999999998643 456678889999999999997654 8999999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCC-ccEEEEEEecCCCEEEEEecC
Q 002493 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL-ERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~i~~~~~~~~l~~g~~d 292 (915)
++++....+.+|.+.|.+++|||+|+.+++.+.||+|++|..+.+. .+..-++.. .+--.+.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 9999999999999999999999999999999999999999987655 233322221 233456777777777665543
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.7e-17 Score=180.42 Aligned_cols=260 Identities=16% Similarity=0.195 Sum_probs=197.9
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCce--eEE----EecCCCCEEEEEEcC
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK--VKV----FEAHTDYIRCVAVHP 109 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~--~~~----~~~~~~~i~~l~~s~ 109 (915)
+.+.||++.........-....+|+|+.|+|. ...++.|+.+|+|.+||+..+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999877333333336778999999995 56677778899999999987655 222 237899999999976
Q ss_pred CCC--EEEEEEcCCeEEEEECCCCeeEEEEe-----e------cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC
Q 002493 110 TLP--YVLSSSDDMLIKLWDWEKGWMCTQIF-----E------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 110 ~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-----~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
+-. -+++++.||.|..|+++.-..+.... . .....++++.|.|.+.+.|++|+.+|.|..-+-.+.+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 49999999999999887432211111 1 1234588999999899999999999998874433322
Q ss_pred --------CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-CCcEEEEecCCccCeEEEEEeCCCC-EEEE
Q 002493 177 --------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELP-IIIT 246 (915)
Q Consensus 177 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~ 246 (915)
....+..|.++|+++.++|-+.. .+++++ |-+++||... ...++..+..+...+++++|||-.+ .+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 23355678899999999998876 444444 9999999987 6677777877888899999999876 6677
Q ss_pred EEcCCcEEEEeCCCc--ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 247 GSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+..||.|.+||+... .++.+..........+.|++.|+.|++|...|.+.++
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 778999999998643 3455555555677889999999999999999999985
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=161.86 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=206.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~vw 84 (915)
++...|++|.+.|+++.|..++. |.+|...|.|++|++++......+. .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 44556779999999999999886 8899999999999999998888888 57788999998888 568888899999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcC-----CCC----EEEEEEcCC-eEEEEECCCCeeEEEEe----ecCCccEEEEEE
Q 002493 85 NYNTMDKVKVFEAHTDYIRCVAVHP-----TLP----YVLSSSDDM-LIKLWDWEKGWMCTQIF----EGHSHYVMQVTF 150 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~-----~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~ 150 (915)
++.-+..+.. |+-.+.++-|.+ .++ .++.-+... .+.+-|.... ...++. .+..+.+++..|
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCceeeeec
Confidence 9876544332 222333444432 211 111111100 0111121111 111111 123456777776
Q ss_pred ccCCCC--EEEEEECCCcEEEEECCCCCCc----------eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002493 151 NPKDTN--TFASASLDRTIKIWNLGSPDPN----------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 151 ~p~~~~--~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
.-..+. +++.|..+|.+.+||+.++..+ .....|..+|.++.|.+..+ .=++|+.+..+..|++..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeecc
Confidence 543333 4667889999999999987433 33356889999999986554 256777778888888763
Q ss_pred --CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCe
Q 002493 219 --KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 219 --~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~ 294 (915)
+.+ ........-.|..+.+-||++++++++.|+.||+|+.++.+++..+..|...|.+++|+|+...+|.++.|++
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 222 1222223446889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 002493 295 IMVKI 299 (915)
Q Consensus 295 v~i~~ 299 (915)
|.+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99983
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7e-17 Score=148.09 Aligned_cols=268 Identities=16% Similarity=0.289 Sum_probs=195.0
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCC----------CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
..|.+-+|+|.+++|++|..+|.|.+..+++ ...+-....|+++|..++|. ..+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 4577789999999999999999999998754 22344457899999999998 345666654 9999998
Q ss_pred CCCCce------eEE--EecCC-----CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEcc
Q 002493 86 YNTMDK------VKV--FEAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 86 ~~~~~~------~~~--~~~~~-----~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (915)
.+.... +.. ...|. ..|++|-..|..+-++.++.|+.++-||++++ .....+++|+.+|.++.-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 764322 111 11122 35889999998888888889999999999999 88999999999999998854
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCC----------CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE
Q 002493 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
....+++|+.||++++||.++++.+..+...+. -|.+++ .+.+ ++++|+ ...+.+|.++..++.
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~ed--WlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNED--WLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCc--eEEecC-CCceeEEeccCCCce
Confidence 567899999999999999999998877643221 233333 2333 666655 568999999998887
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC-CEEEEEecCCeEEE
Q 002493 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~g~~dg~v~i 297 (915)
..+. ...++..+.|..+ .+++++..+.|.-|.+. |.+...........++.+|+..- ++|.+++....+.+
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 7776 4456777888765 67888888899999865 55544444444445555554432 33444454444444
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=157.54 Aligned_cols=233 Identities=21% Similarity=0.325 Sum_probs=187.9
Q ss_pred CCCEEEEEEc-------CCCCeEEEEEcCCcEEEEECCCCceeEEEEec--C---CCEEEEEEeCCCCEEEEEeCCCeEE
Q 002493 15 SERVKSVDLH-------PSEPWILASLYSGTVCIWNYQSQTMAKSFEVT--E---LPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 15 ~~~v~~~~~s-------p~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~g~~dg~i~ 82 (915)
.+.|...+|- |+..++|+.+.+.-|++||.-+|+...++..- - ....+++|+|||..|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 4567777775 67788999999999999999999988887752 2 245789999999999987 457899
Q ss_pred EEEC-CCCceeEEE-------ecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccC
Q 002493 83 VYNY-NTMDKVKVF-------EAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 83 vwd~-~~~~~~~~~-------~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 153 (915)
+||+ +.|..-..+ .+..+.|.|++|||... .+++|+....+-||..... .+...+.+|.+.|+.++|.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e- 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE- 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-
Confidence 9998 555432221 13467899999999665 8899999999999988877 77788889999999999999
Q ss_pred CCCEEEEEEC-CCcEEEEECCCC-CCceEEecCCC-CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCc
Q 002493 154 DTNTFASASL-DRTIKIWNLGSP-DPNFTLDAHQK-GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT 229 (915)
Q Consensus 154 ~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 229 (915)
+++.|++|.. |-.|..||++.. .++..+..|.. .-..|-|.-+..+.+|++|+.+|.|++||+++ +..+..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 8888888876 678999999864 45666666655 44566676666666999999999999999998 77788888889
Q ss_pred cCeEEEEEeCCCCEEEEEEcC
Q 002493 230 HNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~d 250 (915)
..+..++++|--+++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888887754
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=6.5e-17 Score=152.26 Aligned_cols=273 Identities=15% Similarity=0.227 Sum_probs=201.3
Q ss_pred CEEEEEEcC---CCCeEEEEEc----CCcEEEEECC--CCceeEEE-EecCCCEEEEEEeCCCC-----EEEEEeCCCeE
Q 002493 17 RVKSVDLHP---SEPWILASLY----SGTVCIWNYQ--SQTMAKSF-EVTELPVRSAKFVARKQ-----WVVAGADDMFI 81 (915)
Q Consensus 17 ~v~~~~~sp---~~~~la~~~~----dg~v~iwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~g~~dg~i 81 (915)
.+.++.||. .+.+||.|+. ++.|.|-.+. +++.+..- -.|.-|++.+.|.|+.. +||+++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 578899984 2347888874 5667776543 44444322 13788999999999863 455544 479
Q ss_pred EEEECCCCce----eEEE-----ecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEE
Q 002493 82 RVYNYNTMDK----VKVF-----EAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 82 ~vwd~~~~~~----~~~~-----~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~ 149 (915)
++|.+...+. ...+ ..+..++++..|+.- -++|.++|-|-+..|||++++. .+...+..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999874221 1111 245678999999984 4578899999999999999862 35667788999999999
Q ss_pred EccCCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEEEECCC-CcEEEE
Q 002493 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~ 224 (915)
|.....+.|++.+.||++++||++.......+. ....+...++|++...+ |+++-.. ...|.|.|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCCCcceeh
Confidence 998677899999999999999998866544432 22456778888876544 6766544 46799999986 457889
Q ss_pred ecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcce------eeeeecCCccEEEEEEecC-CCEEEEEecCC
Q 002493 225 LEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL------ENTLNYGLERVWAIGYMKS-SRRIVIGYDEG 293 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~i~~~~~-~~~l~~g~~dg 293 (915)
+++|.+.|..++|.|.. ..|++++.|..+.+||+...-. +..+. ..+.|..+.|++. +..+++++...
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 99999999999999965 5899999999999999875322 22222 3467999999964 66777776543
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.8e-18 Score=175.18 Aligned_cols=245 Identities=17% Similarity=0.261 Sum_probs=193.1
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002493 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
++..|...|+.+.|.|....|++++.||.|.+|++.. -+++.+|.+|.++|.|+++++++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4556888999999999999999999999999999932 24577889999999999999999999999999999
Q ss_pred EEEECCCC---------eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEE
Q 002493 124 KLWDWEKG---------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVD 192 (915)
Q Consensus 124 ~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~ 192 (915)
+.|++..+ ......+.+|...|+.+++++ ..+.|++++.||+++.|......+ .++.. ..+...++.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99965421 245567889999999999999 778899999999999999876665 33322 223334555
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceee
Q 002493 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
+-..... ..++...-+.-.++++.....+..+... ...+..+.++|.+.+.+++..|+.|+++|..++.++.
T Consensus 447 ~~ss~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 5332211 2333333344445555555444444321 2347788999999999999999999999999999999
Q ss_pred eeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
....|...++++++.|+|.+|++|+.||.+.+|.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhh
Confidence 9999999999999999999999999999999974
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.4e-15 Score=171.21 Aligned_cols=290 Identities=28% Similarity=0.474 Sum_probs=232.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~v 83 (915)
.....+..|...|.+++|+|++.++++++. ++.+++|+...+..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 344567789999999999999998888875 99999999998888899999999999999999998 4555589999999
Q ss_pred EECCCCceeE-EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 84 YNYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
||..++.... .+..|.... ...|+|++.++++++.|+.+++|+..........+..|...+.++.|+| ++..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEee
Confidence 9988888877 688888875 4489999988999999999999999876442334467889999999999 777888899
Q ss_pred CCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEE-eCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002493 163 LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
.|+.+.+|+..+........ .|...+..+.+ +.. ...++.+ ..|+.+.+|+............ ...+..+.+++
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 380 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP 380 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC
Confidence 99999999998877666655 67777889988 532 1245555 6789999999987773333332 22288899988
Q ss_pred CCCEEEE-EEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002493 240 ELPIIIT-GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
...+.. +..++.+.+|+................+....+++++..++.++.++.+.+|...
T Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 544444 6889999999998877666555443688899999999999999999999987433
No 191
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.77 E-value=1.2e-14 Score=162.94 Aligned_cols=276 Identities=14% Similarity=0.209 Sum_probs=171.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCc--EEEEECCC-Cc---eeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGT--VCIWNYQS-QT---MAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~--v~iwd~~~-~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
|++.-.+...+|.-..+++++..+. +.++.++. ++ ....+. ..+..|.++.|..++..++.+...|.|.+-|
T Consensus 17 ~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd 96 (1265)
T KOG1920|consen 17 GPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVD 96 (1265)
T ss_pred CCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEc
Confidence 4443455666666666666543222 23333222 22 111121 1335799999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC----C-----------------Ce-eEEEEeecC--
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE----K-----------------GW-MCTQIFEGH-- 141 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~----~-----------------~~-~~~~~~~~~-- 141 (915)
..+... .....-.+.|.+++||||+..++..+..+++.+-+-. . || .....+.+.
T Consensus 97 ~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 97 PETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred ccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchh
Confidence 887543 3334456789999999999999999988888776421 0 00 000011110
Q ss_pred -------------------CccEEEEEEccCCCCEEEEEE-----CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC
Q 002493 142 -------------------SHYVMQVTFNPKDTNTFASAS-----LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (915)
Q Consensus 142 -------------------~~~v~~~~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (915)
...=+++.|-- |+.+|++.. ..+.|++||-. +.....-....+.-.+++|-|.|
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG 253 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC
Confidence 11124588987 888888832 23789999976 44333333334444689999987
Q ss_pred CcCEEEEE---eCCCeEEEEECCCCcE----EEEecCCccCeEEEEEeCCCCEEEE---EEcCCcEEEEeCCCcc--eee
Q 002493 198 DKPYLITG---SDDHTAKVWDYQTKSC----VQTLEGHTHNVSAVCFHPELPIIIT---GSEDGTVRIWHATTYR--LEN 265 (915)
Q Consensus 198 ~~~~l~~~---~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~---~~~dg~v~iwd~~~~~--~~~ 265 (915)
. ++++- .+++.|.+|.-+ |-. ...+......+..++|+.++..|++ ......|++|.+.++. +.+
T Consensus 254 s--~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 254 S--LIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred C--eEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 6 56654 346678888743 332 2223333445899999999998887 4455559999988876 334
Q ss_pred eeecCCccEEEEEEecCC-CEEEEEecCCeEEE
Q 002493 266 TLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~-~~l~~g~~dg~v~i 297 (915)
.+..+.... +.|+|.. ..+.+-..+|...+
T Consensus 331 ~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 331 ELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred EEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 444443333 7888853 34444446666555
No 192
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.76 E-value=4.4e-12 Score=149.70 Aligned_cols=545 Identities=13% Similarity=0.162 Sum_probs=303.4
Q ss_pred CCEEEEEEcCCCCeEEEEEcCC----cEEEEECCCCc---eeEEEE-----ecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSG----TVCIWNYQSQT---MAKSFE-----VTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg----~v~iwd~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~g~~dg~i~v 83 (915)
..+...+|.+....+.++.... .|.+....... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 4678888888776555444322 34444433322 222332 23467999999999999999999999999
Q ss_pred E----ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------------------ee-EEEE
Q 002493 84 Y----NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------WM-CTQI 137 (915)
Q Consensus 84 w----d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------~~-~~~~ 137 (915)
. +..+. .+.....-...|.+++||||+..|+..+.+|++.+.+-.=. |- ....
T Consensus 102 ~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 54442 33333444678999999999999999999999888752100 00 0000
Q ss_pred eec------------------------CCccEEEEEEccCCCCEEEEEEC---C---CcEEEEECCCCCCceEEecCCCC
Q 002493 138 FEG------------------------HSHYVMQVTFNPKDTNTFASASL---D---RTIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 138 ~~~------------------------~~~~v~~~~~~p~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|.| +...-..++|-. |+.+|++.+. . +.++||+-. |....+...-.+-
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 000 222456788988 9999998875 2 578999964 5433333333333
Q ss_pred eeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEec----CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 188 VNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLE----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
-.+++|-|.|+ +|++... ...|.+|. ++|-.-..|. .....|..+.|++++..|+....| .|.+|...+
T Consensus 259 e~~l~WrPsG~--lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~N 334 (928)
T PF04762_consen 259 EGALSWRPSGN--LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSN 334 (928)
T ss_pred cCCccCCCCCC--EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeC
Confidence 45789999998 6666543 35677777 4454433332 345679999999999999998766 499999988
Q ss_pred cc--eeeeeecCC-ccEEEEEEecC-CCEEEEEecCCeEEEec----CCCcceeEecCCCcEEEEeeCceEEEEeeeccc
Q 002493 261 YR--LENTLNYGL-ERVWAIGYMKS-SRRIVIGYDEGTIMVKI----GREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (915)
Q Consensus 261 ~~--~~~~~~~~~-~~v~~i~~~~~-~~~l~~g~~dg~v~i~~----~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 332 (915)
+. +.+.+.... ..+..+.|+|. ...|.+.+.+|.+.... ....+...-...|.+...-...+.+..++...
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~- 413 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV- 413 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC-
Confidence 76 344444332 34455999996 45577777767665521 10000000011112222222222222211100
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeecccc-----------------------cC
Q 002493 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWRN-----------------------RS 388 (915)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~~-----------------------~~ 388 (915)
-+.++...++. ....+..++|++++..+++. ++|.+.+|....... ..
T Consensus 414 -------VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 414 -------VPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred -------CCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 00111122222 23468899999998755555 488899997432110 01
Q ss_pred ccceeEEEEecCCcEEEEecC----CeEEEeccCccc-eeeeecCcccceeecCcEEEEeeCC--eEEEEeccCCcEEE-
Q 002493 389 FGSALEFVWSSDGEYAVRESS----SKIKIFSKNFQE-KRSVRPTFSAERIYGGTLLAMCSND--FICFYDWAECRLIR- 460 (915)
Q Consensus 389 ~~~~~~~~~s~~~~~l~~~~~----~~v~v~~~~~~~-~~~~~~~~s~~~i~~g~~La~~~~~--~v~~~d~~~~~~i~- 460 (915)
......++|..++.+++.... ..+.+++..... ...+......+ +..+.....+ ...++...+|+.+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 234578888877766555543 456666542211 11111111111 1111111111 21223333343331
Q ss_pred ----------EEEccccEEEE--cCCCC---EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeE
Q 002493 461 ----------RIDVTVKNLYW--ADSGD---LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (915)
Q Consensus 461 ----------~~~~~i~~v~~--s~dg~---~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (915)
++...+..+.. ..+.. .++..++.+.++.. -..+...+
T Consensus 562 ~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n---------------------------~~~la~~~ 614 (928)
T PF04762_consen 562 SSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYAN---------------------------SRLLASNC 614 (928)
T ss_pred ecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEEC---------------------------CEEEecCC
Confidence 11111222211 12211 23333333333321 11234667
Q ss_pred EeeEEecCEEEEEccCCeEEEEECC-----------E-----EeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEec
Q 002493 526 RTGLWVGDCFIYNNSSWRLNYCVGG-----------E-----VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (915)
Q Consensus 526 ~~~~w~~d~~i~~~~~~~l~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~ 589 (915)
+|....+++++|+|.+..+.+.... . -..+....+--.++...|...++++.-+.||+-...+.
T Consensus 615 tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR 694 (928)
T PF04762_consen 615 TSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPR 694 (928)
T ss_pred ceEEEEcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccH
Confidence 7888889999999997767666533 0 01233444455678888889999999999998876663
Q ss_pred chHH-HHHHHHHccCHHHH
Q 002493 590 LSLI-EYKTLVMRGDLERA 607 (915)
Q Consensus 590 ~~~~-~~~~~~~~~~~~~a 607 (915)
.-++ .....+.++++-+|
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~A 713 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEA 713 (928)
T ss_pred hHHHHHHHHHHhhccHHHH
Confidence 3222 22334445555554
No 193
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-14 Score=152.48 Aligned_cols=367 Identities=15% Similarity=0.200 Sum_probs=253.7
Q ss_pred CchhhhhhcccCCCCEEEEEEcCC------------CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC--
Q 002493 3 LRLEIKRKLAQRSERVKSVDLHPS------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-- 68 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-- 68 (915)
+.++....+..|...|+.+.|.|- ...||++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 346677888899999999999873 125777888999999999999988899999999999999873
Q ss_pred -C-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC------eeEEEEee
Q 002493 69 -K-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFE 139 (915)
Q Consensus 69 -~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 139 (915)
. ..|++-.....|.+||..||++............|+.+.| |.+.+..-+..|.+.+.+.-.. .+..++..
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4666667778999999999999998887777888899999 4456666666777777764321 12223322
Q ss_pred cCCc-------------------------cEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEE
Q 002493 140 GHSH-------------------------YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 140 ~~~~-------------------------~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 194 (915)
.|.. +...++|+|.-.+.++. ...+.+.++|+.-..++....-..+.+.-+.|.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 3222 12245678844454444 456789999998888888777777888899999
Q ss_pred eCCCcCEEEEEeCCCeEEEEECCC----------------CcEEE---E-------------------------------
Q 002493 195 TGGDKPYLITGSDDHTAKVWDYQT----------------KSCVQ---T------------------------------- 224 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~---~------------------------------- 224 (915)
|++++..|++...||.+.+|-.+. +.... .
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 999988999999999999996442 11110 0
Q ss_pred -e----------------------------------------cCCccCeEEEEEeC-----------CC-------CEEE
Q 002493 225 -L----------------------------------------EGHTHNVSAVCFHP-----------EL-------PIII 245 (915)
Q Consensus 225 -~----------------------------------------~~~~~~i~~i~~~~-----------~~-------~~l~ 245 (915)
+ .+|....++....| .+ ++++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0 01222222222221 11 3688
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEE
Q 002493 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTV 325 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 325 (915)
.|...|+|.++|+.++.....+..|...|.++.|.....++-.++..-.-. .| ...+++.+.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~--------------sg----~vrN~l~vt 503 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSA--------------SG----GVRNDLVVT 503 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecccccc--------------cc----ceeeeEEEE
Confidence 999999999999999999999999999999999988776665555321100 00 012233333
Q ss_pred EeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEe
Q 002493 326 NIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWS 398 (915)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s 398 (915)
. +.+|........ .+..+.+|+.+..|..|++|++.- +.-+.+|+.+..+ .+..-.++.+.|+
T Consensus 504 d---------LrtGlsk~fR~l-~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 504 D---------LRTGLSKRFRGL-QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred E---------cccccccccccC-CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 3 333332222111 144566889999999999999987 6778888775542 3334457888888
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=6.4e-16 Score=141.88 Aligned_cols=227 Identities=20% Similarity=0.287 Sum_probs=167.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.|.+-+|+|.+++|++|+.+|.|.+..+++. .++..+++|.++|..++|+ ..+|++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3556689999999999999999999988642 2344557999999999998 345666664 99999988
Q ss_pred CCCee---EEEE----eecC-----CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC
Q 002493 129 EKGWM---CTQI----FEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG 196 (915)
Q Consensus 129 ~~~~~---~~~~----~~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (915)
+...+ +... ..-| -..|.++...| ..+.+++++.|+.++.||+.+++....+++|...+.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 64311 1111 1111 23578899999 5555566668999999999999999999999999999987332
Q ss_pred CCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc----------cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002493 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT----------HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.. .+++|+.||++++||.++++++..+.... ..|-+++. +..++++|+ ...+.+|+++..+....
T Consensus 168 ~~--qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 168 NG--QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred Cc--ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEE
Confidence 22 49999999999999999999988775422 12444444 445777776 45799999999998888
Q ss_pred eecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+..+ .++..+.|..+ .+++++....+.-
T Consensus 243 fpip-a~v~~v~F~~d--~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 243 FPIP-ARVHLVDFVDD--CVLIGGEGNHVQS 270 (325)
T ss_pred Eecc-cceeEeeeecc--eEEEeccccceee
Confidence 8766 67888888654 4555555444443
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2e-16 Score=151.41 Aligned_cols=308 Identities=16% Similarity=0.257 Sum_probs=200.7
Q ss_pred CCCEEEEEEcCCCCeEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002493 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~ 92 (915)
-+.|..+.|..|..+++++.+ ++.|.+|++...+-...+.....++.++.|||+|+.|... .-+-.|.||.+.|.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999999988887655 8899999998888777788788899999999999766654 55889999999985544
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
. ++-....+..++|+|+|++.+.++.-...-.+++. ..+.+...+...+-..+.+.|+| |++.+++ |
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laV---------w 196 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAV---------W 196 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEE---------e
Confidence 3 33334456889999999998887653211111111 11222233333344456667777 5555443 3
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-----------------------------
Q 002493 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC----------------------------- 221 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------- 221 (915)
|.--.-.+..+. ..-++..+.|+|.++ ++++|+.|+.+++.+--+.++
T Consensus 197 d~~Leykv~aYe-~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 197 DNVLEYKVYAYE-RGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred cchhhheeeeee-eccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 321111111111 224456667777665 677777777666654211110
Q ss_pred -------------------------------EEEe------cCCccCeEEEEEeCCCCEEEEEEc--CCcEEEEeCCCcc
Q 002493 222 -------------------------------VQTL------EGHTHNVSAVCFHPELPIIITGSE--DGTVRIWHATTYR 262 (915)
Q Consensus 222 -------------------------------~~~~------~~~~~~i~~i~~~~~~~~l~~~~~--dg~v~iwd~~~~~ 262 (915)
+..+ ....-.+.-++|++|..++++-.. -+.+-+||+++.+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 0011 112234678999999988887653 2569999998776
Q ss_pred eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCcee
Q 002493 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
+...+. ...+|....|.|....|++.+....+++|......++...
T Consensus 354 l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP--------------------------------- 399 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP--------------------------------- 399 (447)
T ss_pred hhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---------------------------------
Confidence 554443 4478999999999999999988888888744433222221
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEE
Q 002493 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYII 378 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i 378 (915)
.....++.+.|..+|.+++.++...+.+
T Consensus 400 --------~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 400 --------KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred --------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 1124567899999999999998666554
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.5e-16 Score=152.17 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=194.3
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.+.....+|+|.+|++|+..+|++.....|.||.....+ ..++++.|...|++++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 344456799999999999999999999999999877554 56788899999999999999999999999999999998
Q ss_pred CCC--eeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc----eEEecCCCCeeEEEEEeCCCcCEE
Q 002493 129 EKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 129 ~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
..+ ++....+..++...+++.|+| .++.|++|+..+.|.||-+.....- ..-..+...|.+++|+|++- ++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--Ll 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--ee
Confidence 433 445556677889999999999 8999999999999999988654321 12235677899999999887 89
Q ss_pred EEEeCCCeEEEEECC-----C-------------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-e
Q 002493 203 ITGSDDHTAKVWDYQ-----T-------------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-L 263 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~ 263 (915)
++|+.|+..+++..- . |+.+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999998642 1 22334444566789999999999999999999999999976654 4
Q ss_pred eeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 264 ~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+..+.....+..++.|-.+...+++|.+-+-+.+
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 5555555577888888887776666666455444
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=1.3e-16 Score=173.58 Aligned_cols=243 Identities=17% Similarity=0.248 Sum_probs=186.2
Q ss_pred CCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCce--eEE----EEecCCCEEEEEEeCCCCE--EEEEeCCCeEEEEE
Q 002493 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTM--AKS----FEVTELPVRSAKFVARKQW--VVAGADDMFIRVYN 85 (915)
Q Consensus 15 ~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~~~~~--l~~g~~dg~i~vwd 85 (915)
...|+|+.|+|..+ ++|.|+++|.|.+||+..+.. ... ...|..+|..+.|..+..- +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999655 667778899999999987755 222 2358889999999875544 99999999999998
Q ss_pred CCCCcee-E-----EEe------cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCC---e----eEEEEeecCCccE
Q 002493 86 YNTMDKV-K-----VFE------AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG---W----MCTQIFEGHSHYV 145 (915)
Q Consensus 86 ~~~~~~~-~-----~~~------~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~---~----~~~~~~~~~~~~v 145 (915)
++..... . ... .....+++++|.+..+ .+++|++.|.|.--+..+. . +....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7643221 0 011 1233688999998654 6889999999887443322 1 1233556788999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC--cEE
Q 002493 146 MQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCV 222 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~ 222 (915)
.++.++|-....|.+++ |.++++|... ...++..+..+...+++++|||.... +++++..+|.+.+||+... .++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhccccCCc
Confidence 99999996666666666 9999999988 66778788878888999999998664 8888999999999999753 355
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.+........+.+.|+++|+.|++|...|.+++|++.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5555456667788899999999999999999999985
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=166.74 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=234.3
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeCC--CCEEEEEeCCCe
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR--KQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~g~~dg~ 80 (915)
++.+..+|.+|.+.|..+.|+..|..|++|+.|..|.+||+.++.....+. +|...|....|.|. ...+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 567888999999999999999999999999999999999999998877765 68888988899884 467899999999
Q ss_pred EEEEECCC-Cce--eEEEecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeeEEE--EeecCCc---cEEEEEEc
Q 002493 81 IRVYNYNT-MDK--VKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSH---YVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~---~v~~~~~~ 151 (915)
+++=.+.. +.. .+.+..|.++|.-++.-|+.++ |.+++.|+.+.-.|++.+..... .-..+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99876543 322 3456689999999999998764 78999999999999987622111 1122333 57889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC------ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDP------NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT- 218 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 218 (915)
|...+.+++++.|..+++||.+.-.. +..+ ......|+|++|+.++.. +++...|-.|+++.-..
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccc
Confidence 98888999999999999999865321 1222 133457899999987774 77778888899995432
Q ss_pred -C----------cEEE-EecCCcc--CeEEEEE-eCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC
Q 002493 219 -K----------SCVQ-TLEGHTH--NVSAVCF-HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 219 -~----------~~~~-~~~~~~~--~i~~i~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
| ..+. .+++|.. .|..+-| -|...++++|+.-|.|.||+-.+++.+..+.+...-|.|+.-+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 1122 2566654 3666665 5677899999999999999999999999888887889999999999
Q ss_pred CEEEEEecCCeEEEecCC
Q 002493 284 RRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 284 ~~l~~g~~dg~v~i~~~~ 301 (915)
..||+.+-|.-|+||...
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 999999999999999653
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=153.70 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=155.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEE-EeecCC-ccE
Q 002493 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQ-IFEGHS-HYV 145 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-~~v 145 (915)
..++++...|.|++||..+++.+..+++++..+..+.|.. ....+.+|+.||+|++||++...+..+ .+..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 355788999999999999997644433 334444 456
Q ss_pred EEEEEccCCCCEEEEEEC----CCcEEEEECCCCCC-ceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002493 146 MQVTFNPKDTNTFASASL----DRTIKIWNLGSPDP-NFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.+++.+- ..+.+++|+. +-.|.+||.+..+. +..+ ..|...|++++|+|...+ +|++|+.||.|.+||+...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 6777664 5678888764 56799999998765 4333 579999999999998765 9999999999999998753
Q ss_pred c---EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeee
Q 002493 220 S---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 220 ~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
. .+...-.+...|.++.|+.++ +.|.+-+..++..+|++..+.....+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 222333477789999999887 457888889999999999887554443
No 200
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3.9e-16 Score=153.22 Aligned_cols=226 Identities=14% Similarity=0.229 Sum_probs=168.4
Q ss_pred hcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002493 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~ 80 (915)
...||+++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+|.- +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4579999999999999 4567899999999999998764 4567788999999999999964 67889999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc-cEEEEEEccCCCCEEE
Q 002493 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~ 159 (915)
|.+||+.||+.+..+. |.+.|.++.|+.+|.+|++.+.|..|+|||.+++ .+...-.+|.+ .-..+.|-. ++..+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~-~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA-SGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec-cCceee
Confidence 9999999999988888 9999999999999999999999999999999998 45554456643 334455655 666555
Q ss_pred EEE---CCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecC--Ccc
Q 002493 160 SAS---LDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG--HTH 230 (915)
Q Consensus 160 ~~~---~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--~~~ 230 (915)
+|- .++++-+||..+-+.. ..+. ...+|.---|.++.+ .+.++|-.|+.|+-|.+.+..+ +..+.. ...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~-ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e 310 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS-IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE 310 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC-EEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence 443 3678999997654332 2222 334454444555443 3566777899999999876553 222221 222
Q ss_pred CeEEEEEeCC
Q 002493 231 NVSAVCFHPE 240 (915)
Q Consensus 231 ~i~~i~~~~~ 240 (915)
+=..+.|-|.
T Consensus 311 pQRG~g~mPK 320 (472)
T KOG0303|consen 311 PQRGMGFMPK 320 (472)
T ss_pred cccccccccc
Confidence 3445666664
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=2e-17 Score=165.55 Aligned_cols=270 Identities=17% Similarity=0.259 Sum_probs=223.2
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 96 (915)
....+.++.+|.+|+.|+..|.|..+|+.++++...+... ..|..+.|-.+.+++|++. ...++||| +.|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 4567899999999999999999999999999998888744 4689999999999888875 46799999 4577788887
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC
Q 002493 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
.|. .|..+.|.|..-+|++++..|.++--|+.+| .++..+....+.+..++-+| -+..+-+|...|+|.+|...+.+
T Consensus 208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hcC-chhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc
Confidence 655 6889999999888899999999999999999 56666666678888999999 78899999999999999999999
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002493 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
++..+.+|.++|.++++.++|. |+++.+.|..++|||+++...+.++.. ..+...+++|..| +++.+....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999888 999999999999999998877777764 5667888999876 3444455589999
Q ss_pred eCC-Ccc--eeeee--ecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 257 HAT-TYR--LENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~-~~~--~~~~~--~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
.-. .+. ....+ ....+.|..+.|+|-...|-+|...|.-.+
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 521 111 11111 112358999999999999999988887655
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7.1e-16 Score=145.39 Aligned_cols=239 Identities=17% Similarity=0.225 Sum_probs=182.0
Q ss_pred ccCCCCEEEEEEcCCCC-----eEEEEEcCCcEEEEECCCC--ce--eEEE-----EecCCCEEEEEEeC-CCCEEEEEe
Q 002493 12 AQRSERVKSVDLHPSEP-----WILASLYSGTVCIWNYQSQ--TM--AKSF-----EVTELPVRSAKFVA-RKQWVVAGA 76 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~-----~la~~~~dg~v~iwd~~~~--~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~g~ 76 (915)
..|.-+++.+.|.|+.. +||+.+ ..+++|.+... +. ...+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999873 555543 47999998632 11 1111 23567999999987 567888889
Q ss_pred CCCeEEEEECCCCce---eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecC--CccEEEEEE
Q 002493 77 DDMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTF 150 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~ 150 (915)
-|-+..|||++++.. ...+-+|...|..++|...+ +.+++.+.||.++++|++......-+++.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998733 44566899999999999855 468899999999999999764444444432 457889999
Q ss_pred ccCCCCEEEEEECC-CcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc------EE
Q 002493 151 NPKDTNTFASASLD-RTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------CV 222 (915)
Q Consensus 151 ~p~~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~ 222 (915)
++.+.+++++-..| ..|.+.|++.. .++..++.|...|+.++|.|.... .|+++++|..+.+||++..- ++
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCch
Confidence 99999999886665 46899999875 467888999999999999998765 89999999999999997532 22
Q ss_pred EEecCCccCeEEEEEeCC-CCEEEEEEcCCcEEE
Q 002493 223 QTLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRI 255 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~v~i 255 (915)
.... ..+.|..+.|++. ...|+.+. ++.+.+
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 2233 4667999999974 44676665 445544
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=148.67 Aligned_cols=245 Identities=13% Similarity=0.161 Sum_probs=181.6
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------CCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002493 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN------TMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~------~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|++. +.+++.... .|...|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3455799999999999999999999999999999975 335555554 455899999999999999999999999
Q ss_pred EEEECCCCeeEEEEee--cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCC-Cce--EEecCCCCeeEEEEEeCCC
Q 002493 124 KLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNF--TLDAHQKGVNCVDYFTGGD 198 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~~~~~ 198 (915)
..-|+++. ....++. ...+.|..+..+| ..++|++.+.++.|.+||.+... +.. .+.........+.|+|...
T Consensus 130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETK-QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccc-eeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987 3333333 2235899999999 68899999999999999998754 222 2233445677888998766
Q ss_pred cCEEEEEeCCCeEEEEECCCCcE-EEE------ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceee-eeec-
Q 002493 199 KPYLITGSDDHTAKVWDYQTKSC-VQT------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN-TLNY- 269 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~- 269 (915)
. +|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+++--....-.+||+.+.++.- .+..
T Consensus 208 ~-Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 208 A-LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred e-eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 4 888999999999999885432 111 11112223567899999988887666666678877655322 2211
Q ss_pred -----CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 270 -----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 270 -----~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
....+.+++|..+- .+++|+++-.+.+|.
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 11346678887664 489999998888883
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=7.5e-16 Score=147.51 Aligned_cols=234 Identities=16% Similarity=0.165 Sum_probs=185.5
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CC
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NT 88 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~-~~ 88 (915)
.-..+|+|.+|++|+..+|++..+..|.||...... ..++++.|+..|+++.|+|..+.|++++.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999876654 56788889999999999999999999999999999998 43
Q ss_pred C--ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---eeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 89 M--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 89 ~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
+ ++...+..++...+++.|+|.++.+++|+.-..|.||-.+.. +....+-..+.+.|.++.|+| ++-+++.|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence 3 334456678999999999999999999999999999987654 233445566788899999999 8889999999
Q ss_pred CCcEEEEECC-----C-------------CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-EEEE
Q 002493 164 DRTIKIWNLG-----S-------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQT 224 (915)
Q Consensus 164 dg~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 224 (915)
|+..++|..- . |.....+....+.+..+.|+|+|. .|+-.+.|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeecCCCchhccc
Confidence 9999999741 1 112233345677899999999998 69989999999999977554 3444
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcC
Q 002493 225 LEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
.....-+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444446777777776644 4444444
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.8e-14 Score=139.64 Aligned_cols=233 Identities=15% Similarity=0.212 Sum_probs=177.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC--CeEEEEECCCCeeEE
Q 002493 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCT 135 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 135 (915)
..+..+.|+.+...|.+|+.|| .++|+..............-.|.-+-|+.+ +++..+.+ ..+++++.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 4567777999999999999998 678887765543333333445666777754 56655554 348999988764333
Q ss_pred EEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEe--CCCeEE
Q 002493 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGS--DDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~--~dg~i~ 212 (915)
... ....|.++.++. +.|+++-. ..|+|||+++.+.+.++... ..+-..++++++..+.|++--+ ..|.|.
T Consensus 83 e~~--fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIF--FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEe--cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 332 346699999974 45555544 44999999999888777543 2222345555555554777643 468999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc-EEEEeCCCcceeeeeecCC--ccEEEEEEecCCCEEEEE
Q 002493 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~g 289 (915)
+||..+-+++..+..|.+++.+++|+++|.+||++|..|+ ||++++.+|+.+.++..+. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999997 7999999999999887653 468899999999999999
Q ss_pred ecCCeEEEec
Q 002493 290 YDEGTIMVKI 299 (915)
Q Consensus 290 ~~dg~v~i~~ 299 (915)
++.++|.++.
T Consensus 237 S~TeTVHiFK 246 (391)
T KOG2110|consen 237 SNTETVHIFK 246 (391)
T ss_pred cCCCeEEEEE
Confidence 9999999963
No 206
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.70 E-value=2.9e-15 Score=158.04 Aligned_cols=272 Identities=22% Similarity=0.212 Sum_probs=186.8
Q ss_pred EeccCCcEEEEEE--ccccEEEEcCCCCEEEEEeCCeEEEE-EecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEe
Q 002493 451 YDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYIL-KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRT 527 (915)
Q Consensus 451 ~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~ 527 (915)
.|+-.|+....+. +.|..+..+..+..|.+.++...+.+ +..+.+-...+ .|+. .
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil-------------nfcs---------y 380 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL-------------NFCS---------Y 380 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH-------------HHhh---------h
Confidence 4565666555443 57888888888888777765543332 21111111000 1211 1
Q ss_pred eEEec--CEEEEEccCCeEEEEECC---EEeEEEecccceEEEEEEeeCCE-EEEEecCCceEEEEecchHHHHHHHHHc
Q 002493 528 GLWVG--DCFIYNNSSWRLNYCVGG---EVTTMFHLDRPMYLLGYLASQSR-VYLIDKEFNVMGYTLLLSLIEYKTLVMR 601 (915)
Q Consensus 528 ~~w~~--d~~i~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~l~~~~~~~~~~~~~ 601 (915)
..|++ |+++..+. +.++.+++. +..+...++.. +.++...+++ -+++.....-+.|.++..+++|..++..
T Consensus 381 mqwvp~sdvivaqn~-dnl~iwyn~d~peqvt~~kikgd--v~~l~r~~~kteviv~e~takvayeld~~~iefgaaid~ 457 (1636)
T KOG3616|consen 381 MQWVPGSDVIVAQNG-DNLCIWYNIDAPEQVTMFKIKGD--VEALERDADKTEVIVMEGTAKVAYELDEGLIEFGAAIDD 457 (1636)
T ss_pred heeccCcceEEecCC-CceEEEecCCcchhheeeEeccc--chhhhcCCCceeEEEeecceeEEEEecCcceeccccccc
Confidence 34876 77776555 567766643 33333333322 2222223333 2344455566789999999999999988
Q ss_pred cCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 002493 602 GDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMST 681 (915)
Q Consensus 602 ~~~~~a~~~~~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~ 681 (915)
++++.|... ++...+-. +...+|..+|++|+..
T Consensus 458 ~df~ra~af---------------les~~~~~--------------------------------da~amw~~laelale~ 490 (1636)
T KOG3616|consen 458 GDFDRATAF---------------LESLEMGP--------------------------------DAEAMWIRLAELALEA 490 (1636)
T ss_pred CchHHHHHH---------------HHhhccCc--------------------------------cHHHHHHHHHHHHHHh
Confidence 888876444 43332221 2257899999999999
Q ss_pred CChhhHHHHHHHcCCcchhHHHHHhcCCHHHH------------HHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHC
Q 002493 682 GKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGI------------SKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 682 ~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~ 749 (915)
|++-+|++||...+|..++.+++-...-++.+ +-.+.++....++..|..+++..++.++|+-+|...
T Consensus 491 ~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~l 570 (1636)
T KOG3616|consen 491 GNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQEL 570 (1636)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999988764433322 345778888889999999999999999999999999
Q ss_pred CCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC--hhhhhhcCCCcc
Q 002493 750 NRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--PKAAESLADPEE 794 (915)
Q Consensus 750 ~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~--~~~a~~l~~~~~ 794 (915)
.+|+||+.+|+..++.....+..-|-++|..++ .|+|+.-...++
T Consensus 571 hkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd 617 (1636)
T KOG3616|consen 571 HKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGD 617 (1636)
T ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCc
Confidence 999999999999999999999888989998765 466665554444
No 207
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.70 E-value=2.8e-15 Score=147.24 Aligned_cols=202 Identities=22% Similarity=0.294 Sum_probs=163.9
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCC------eeEEEEeecCCccEEEEEEccCCCCEEEEEECCC
Q 002493 93 KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
..+.+|.++|..++|+|. ...|++||+|.+|.||.+..+ ......+.+|...|-.+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 345689999999999994 567899999999999998754 2446678899999999999998889999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-eEEEEEeCCCCEE
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l 244 (915)
+|.+|++.+++...++. |...|.+++|+.+|. ++++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999888887 999999999999988 7999999999999999999999888777653 4567788888855
Q ss_pred EEEE---cCCcEEEEeCCCcce---eeeeecCCccEEEEEEecCCCEEEE-EecCCeEEEe
Q 002493 245 ITGS---EDGTVRIWHATTYRL---ENTLNYGLERVWAIGYMKSSRRIVI-GYDEGTIMVK 298 (915)
Q Consensus 245 ~~~~---~dg~v~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~-g~~dg~v~i~ 298 (915)
.+|- ++..+-+||..+.+. ..++... ..|.---|.+|.+.+.. |-.|+.|+.+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEE
Confidence 5543 467899999766543 3344433 44555567788777665 5567888775
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.1e-14 Score=154.19 Aligned_cols=259 Identities=13% Similarity=0.183 Sum_probs=173.8
Q ss_pred EEcCCcEEEEECCC-Cc--eeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC-CCce--eEEEecCCCCEEEE
Q 002493 33 SLYSGTVCIWNYQS-QT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN-TMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 33 ~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l 105 (915)
...++.|.+|++.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|+++ +++. ..... ..+....+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 35689999999964 43 444454 345677899999999987765 47889999987 3332 22222 33456789
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCee---EEEEeecCCccEEEEEEccCCCCEEE-EEECCCcEEEEECCCCCCce-
Q 002493 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNLGSPDPNF- 179 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~~~~~~~- 179 (915)
+|+|++++|++++. ++.|.+|+++.... ....+. +.....+++++| +++.++ +...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999999888764 78999999974311 222222 223456788999 666664 55557999999997633221
Q ss_pred ----EEe-cCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEEEECCC--Cc--EEEEecCCc------cCeEEEEEeCCCCE
Q 002493 180 ----TLD-AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT--KS--CVQTLEGHT------HNVSAVCFHPELPI 243 (915)
Q Consensus 180 ----~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~i~~i~~~~~~~~ 243 (915)
... ........+.|+|+++ +++++.. ++.|.+|++.. ++ .+..+.... .....+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234457899999887 6666655 89999999973 32 233332211 12346889999999
Q ss_pred EEEEEc-CCcEEEEeCCCcc----eeeeeecCCccEEEEEEecCCCEEEEEec-CCeEEEe
Q 002493 244 IITGSE-DGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~g~~-dg~v~i~ 298 (915)
++++.. ++.|.+|++.... .+...... ...+.+.++|+|++|+++.. ++.|.+|
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 988854 6889999985432 22222222 34568999999999998775 7788775
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.4e-16 Score=159.66 Aligned_cols=244 Identities=17% Similarity=0.301 Sum_probs=177.7
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~g~~dg~ 80 (915)
++.+...|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +...+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 466778899999999999999999999999999999999998888887765 6999999999999 4567889999999
Q ss_pred EEEEECCCC----------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeec---------
Q 002493 81 IRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEG--------- 140 (915)
Q Consensus 81 i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------- 140 (915)
|+++|+... +....+..|.+.|..|+..|++ ..+.++++||+|+-+|++....+......
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999742 2344566899999999999999 56789999999999999875333322211
Q ss_pred CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE-----EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 141 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.--...|+..+|.+..+|++|+.|-..++||.+...+... .........|+.+...+. + ...+|.+.
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~--- 270 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH---L--KNSQGNLD--- 270 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc---c--cCcccccc---
Confidence 1134678999999999999999999999999643322111 011122333444332222 1 11111110
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002493 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
. ....++-+.|+|+|.-|++.-..-.|+++|+..++....
T Consensus 271 -------~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 -------R----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -------c----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0 112356789999998666655555899999987765433
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.5e-15 Score=166.18 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=166.4
Q ss_pred CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002493 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
+..|.+||..... .+.+..+...+.+..|+|||+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999976554 55677788889999999999999987653 4799999988764322 22223344689999999
Q ss_pred EEEEEE-cCCeEEEE--ECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCe
Q 002493 113 YVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 113 ~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
.|+.++ .+|.+.|| |+.++ .. ..+..+...+.+..|+| +++.++.++ .+|...+|++...........+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~-~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGG-TP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCC-Ce-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 888765 57765554 66655 33 33445666788999999 777666544 578888887643222222223333
Q ss_pred eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC--CCcceeee
Q 002493 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA--TTYRLENT 266 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~ 266 (915)
.+..|+|+++ +++..+.++ +.+||+.+++........ ....+.|+|+|++|+.++.+|.+.+|.+ .+|+....
T Consensus 336 ~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 4578999988 677766654 566999888754332222 3356789999999999999998888875 35778888
Q ss_pred eecCCccEEEEEEecC
Q 002493 267 LNYGLERVWAIGYMKS 282 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~ 282 (915)
+..+.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 8877778889999985
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=134.94 Aligned_cols=236 Identities=12% Similarity=0.177 Sum_probs=179.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCce
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDK 91 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~vwd~~~~~~ 91 (915)
....+..+.|+.+...|.+|+.+| -++|+..............-.|.-+-|+ ..++|..+.+ ..+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 445678888999999999999888 6888876654422222223344455554 4456655543 4699999988777
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee---cCCccEEEEEEccCCCCEEEEE--ECCCc
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFNPKDTNTFASA--SLDRT 166 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~--~~dg~ 166 (915)
+..+. -+..|.++.++. ++|+++-.+ .|+|||+++. ++..++. .+...+.++.+++ .+.+++.- ...|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCce
Confidence 77765 356799999975 467777765 4999999988 4444433 2444566666665 45566642 33689
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe-EEEEECCCCcEEEEecCC--ccCeEEEEEeCCCCE
Q 002493 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPI 243 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~i~~i~~~~~~~~ 243 (915)
|.+||..+-++...+..|++.+.+++|+++|. +|+++++.|+ ||++.+.+|+.+..|+.. ...|.+++|+|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999999999999999999998 8999999887 789999999999998743 345889999999999
Q ss_pred EEEEEcCCcEEEEeCCC
Q 002493 244 IITGSEDGTVRIWHATT 260 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~ 260 (915)
|++.|..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998753
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.1e-13 Score=132.83 Aligned_cols=235 Identities=16% Similarity=0.269 Sum_probs=167.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEE-EEEcC------CeEEEEECC
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVL-SSSDD------MLIKLWDWE 129 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~-~~~~d------g~i~iwd~~ 129 (915)
...+++|+.|...+++|.++| .+||+.+..+....-..+.+. +.-|-| -.++|+ +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998888 899998764433222222222 222222 233454 44333 479999954
Q ss_pred CCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EeC
Q 002493 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD 207 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~ 207 (915)
.. .+...+. ...+|.++.+.+ ..+++. ..+.|.+|... +.+.+..+.....+---++..|.....+|+. |..
T Consensus 84 k~-~~i~el~-f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIELS-FNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEEE-eccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 44 4444443 457799999975 345544 46789999987 4555555543332222444555555445554 345
Q ss_pred CCeEEEEECCCCcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCc-EEEEeCCCcceeeeeecCC--ccEEEEEEecC
Q 002493 208 DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~ 282 (915)
-|.|+|-|+...+. ...+..|.+.|.+++.+-+|.++|++|..|+ |||||..+|.++.++..+. ..|++++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 69999999986554 5778899999999999999999999999998 8999999999999988654 46999999999
Q ss_pred CCEEEEEecCCeEEEecCCC
Q 002493 283 SRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~ 302 (915)
+.+||++++.|++.+.-.++
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999964443
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=8e-15 Score=160.96 Aligned_cols=288 Identities=15% Similarity=0.175 Sum_probs=200.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---CCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCC-
Q 002493 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH---TDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKG- 131 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~- 131 (915)
.+...+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35677889998899999988889999999999888777643 34688888765 3457999999999999974321
Q ss_pred ---eeEEEEeec-------CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcC
Q 002493 132 ---WMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 132 ---~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 200 (915)
.+++.-+.+ ..+.-.-+.|.. ....|++++.-..|+|||.........+. +....++++.-+-.. ++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-Cc
Confidence 122222111 111124567877 44455555557899999998766555543 234445655544333 34
Q ss_pred EEEEEeCCCeEEEEECCCCc---EEEEecCCccC--eEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcceeeee--ecC--
Q 002493 201 YLITGSDDHTAKVWDYQTKS---CVQTLEGHTHN--VSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL--NYG-- 270 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--~~~-- 270 (915)
.+++|..||.|++||.+... .+...+.|... |..+.+.++|- .|++|+.+|.|++||++.......+ ..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 89999999999999988643 46667778777 99999998765 4999999999999999874322222 222
Q ss_pred -CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeec
Q 002493 271 -LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (915)
Q Consensus 271 -~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (915)
.+.++++..++....+|+|+. +.+.||......+..+..++.. +
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F----------------------------------~ 1347 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF----------------------------------M 1347 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc----------------------------------c
Confidence 125899999999999999998 8888875444433332221111 1
Q ss_pred CCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002493 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 350 ~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
+.....+.+++|+|-.-++|+|. |+.+.||...
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 23334457999999888888887 7788888644
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=138.78 Aligned_cols=254 Identities=11% Similarity=0.108 Sum_probs=166.3
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC---
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM--- 89 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~~~--- 89 (915)
+..+..++||+.-..+|++..|..|+|||-.. +....++. ....|+|++|-|.+ +.|++|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34588999999888889999999999999555 55555553 45679999999965 5677777655 899975421
Q ss_pred -ce----------eEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCE
Q 002493 90 -DK----------VKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 90 -~~----------~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (915)
.. +....+| .+|++|.|++||..+++++. |..|.|||.+++ ..........+.+.-+.|+| |+..
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP-dgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP-DGDV 252 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC-CCCE
Confidence 11 1112234 58999999999999998875 678999999988 44444444556788999999 9999
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002493 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
|+.++-|+..++|...............+.|...+|+|.|.. +|++.+.... +|.+.....-..+.+ ...+..
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf-LLf~~sgsp~--lysl~f~~~~~~~~~-~~~~k~--- 325 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF-LLFACSGSPR--LYSLTFDGEDSVFLR-PQSIKR--- 325 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE-EEEEEcCCce--EEEEeecCCCccccC-ccccee---
Confidence 999999999999976544333333445568999999999984 4444443333 333321111001110 111111
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCe
Q 002493 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~ 294 (915)
..-+-|+..-....--..-.+.+.+++|.|.|.+||+....+.
T Consensus 326 --------------~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 326 --------------VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred --------------eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 2222222210000000011367789999999999999776554
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.7e-13 Score=130.21 Aligned_cols=236 Identities=15% Similarity=0.248 Sum_probs=168.4
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCC------CeEEEEECCCC
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADD------MFIRVYNYNTM 89 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d------g~i~vwd~~~~ 89 (915)
...+++|+.|...+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+ +|+.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 456699999999999998776 99999876433222222222222222222344554 34332 47999995555
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC--ccEEEEEEccCCCCEEEE-EECCCc
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFAS-ASLDRT 166 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~-~~~dg~ 166 (915)
+++..+. -..+|.++.+.++ +|++.- .+.|+||.....-+....+.... ..+.+++-+. +...|+. |-.-|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccce
Confidence 6666665 4678999999876 466655 46899999986544444444332 2333333222 2333443 445689
Q ss_pred EEEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe-EEEEECCCCcEEEEecC--CccCeEEEEEeCCC
Q 002493 167 IKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEG--HTHNVSAVCFHPEL 241 (915)
Q Consensus 167 i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~~ 241 (915)
|.+-|+...+. ...+..|...|.|++.+..|. ++++++..|+ |+|||..+|+.+..++. ....|.+++|||+.
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 99999987665 478899999999999999888 7999999887 79999999999999874 34569999999999
Q ss_pred CEEEEEEcCCcEEEEeCCC
Q 002493 242 PIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~ 260 (915)
.+|+++|..|+|+||.+..
T Consensus 239 s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEcCCCeEEEEEeec
Confidence 9999999999999998764
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=2e-13 Score=146.68 Aligned_cols=267 Identities=12% Similarity=0.180 Sum_probs=168.5
Q ss_pred EEEeCCCeEEEEECCC-Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCC-Cee-EEEEeecCCccEE
Q 002493 73 VAGADDMFIRVYNYNT-MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEK-GWM-CTQIFEGHSHYVM 146 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~~-~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~-~~~~~~~~~~~v~ 146 (915)
++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +.. ..... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3346689999999964 33 344444 345678899999999987765 478899999873 321 11111 2233467
Q ss_pred EEEEccCCCCEEEEEE-CCCcEEEEECCCCC-C---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002493 147 QVTFNPKDTNTFASAS-LDRTIKIWNLGSPD-P---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
.++++| +++.+++++ .++.|.+|++.... . ...+. +.....+++++|+++. ++++...++.|.+||+.+...
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCc
Confidence 899999 777776665 48899999996432 1 22222 2344677889998873 335556679999999976332
Q ss_pred EE-------EecCCccCeEEEEEeCCCCEEEEEEc-CCcEEEEeCCC--cc--eeeeeecC------CccEEEEEEecCC
Q 002493 222 VQ-------TLEGHTHNVSAVCFHPELPIIITGSE-DGTVRIWHATT--YR--LENTLNYG------LERVWAIGYMKSS 283 (915)
Q Consensus 222 ~~-------~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~v~iwd~~~--~~--~~~~~~~~------~~~v~~i~~~~~~ 283 (915)
+. ... .......+.|+|+|++++++.. ++.|.+|++.. ++ .+..+... ......+.++|++
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 111 2234568999999999988876 89999999873 33 23333221 1112358899999
Q ss_pred CEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002493 284 RRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 284 ~~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
++++++.. ++.|.+|. ++.++..+ ... .. .. ....+..+.++
T Consensus 240 ~~lyv~~~~~~~I~v~~--------i~~~~~~~-------~~~-------------------~~--~~-~~~~p~~~~~~ 282 (330)
T PRK11028 240 RHLYACDRTASLISVFS--------VSEDGSVL-------SFE-------------------GH--QP-TETQPRGFNID 282 (330)
T ss_pred CEEEEecCCCCeEEEEE--------EeCCCCeE-------EEe-------------------EE--Ee-ccccCCceEEC
Confidence 99988754 56666541 11111100 000 00 00 01245678999
Q ss_pred CCCCEEEEEc--CCcEEEEEee
Q 002493 363 PNGRFVVVCG--DGEYIIYTAL 382 (915)
Q Consensus 363 ~~g~~lav~~--~~~~~i~~~~ 382 (915)
|+|++|++++ ++.+.+|...
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEEc
Confidence 9999998876 6778887553
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.2e-15 Score=161.67 Aligned_cols=222 Identities=12% Similarity=0.065 Sum_probs=158.5
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~v 83 (915)
.+.+..|...+.+.+|||||++|+.++.+ ..|++||+.+++... +....+....++|+|||++|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34567788899999999999999987653 369999998875432 222233345789999999998765 5776555
Q ss_pred E--ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 84 Y--NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 w--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
| |+.+++ ...+..+...+....|+|+|+.|+.++ .+|...||+++........+ .+.. .+..|+| +++.++.
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVM 349 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEE
Confidence 4 666655 445556777788999999999877655 56778888765321222222 3333 4578999 8888888
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC--CCCcEEEEecCCccCeEEEEEe
Q 002493 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
.+.++ +.+||+.+++....... .....+.|+|++. +|+.++.++.+.+|.+ .+|..+..+..|.+.+...+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 77755 56699988765432222 2335678999988 7888888888887775 3578888888888888999999
Q ss_pred CC
Q 002493 239 PE 240 (915)
Q Consensus 239 ~~ 240 (915)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 218
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=3.2e-16 Score=167.50 Aligned_cols=238 Identities=21% Similarity=0.354 Sum_probs=187.1
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
+.++.+.+|...|.|+.|...|.++++|++|..++||...++.+.....+|.+.|+.++.+.++-+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE---Ee-cCCCCeeEEEEEeCCCcCEEE
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LD-AHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~l~ 203 (915)
+..+ .++.++.+|++.|++++|+| - .+.+.||++++||.+-.-.+.. +. .....+.++.+...+. -++
T Consensus 261 l~~~-~pvsvLrghtgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~--~f~ 332 (1113)
T KOG0644|consen 261 LPDG-APVSVLRGHTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD--RFL 332 (1113)
T ss_pred cCCC-chHHHHhccccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc--ccc
Confidence 9998 88889999999999999999 2 2778899999999871111110 01 1234456666766666 488
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002493 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+|+.|+.-..|.+..-. .+...+.-+..+.+. .+.+++-.+-.+++|++.+|.+++.+..+...+..+.++|-
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 99999888887654211 111111122222222 35566667778999999999999999999999999999998
Q ss_pred CCEEE-EEecCCeEEEec
Q 002493 283 SRRIV-IGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~-~g~~dg~v~i~~ 299 (915)
..+++ .++.||...||.
T Consensus 407 n~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred CcHhhhhccCCCceEeee
Confidence 77766 478888888873
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=3.7e-13 Score=143.38 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=186.5
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN 87 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg~i~vwd~~ 87 (915)
.++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++++||+++++++ ..+.+.++|.+
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 3444444444557899999999999999999999999999999998654 468899999999999876 48999999999
Q ss_pred CCceeEEEecC-------CCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 88 TMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 88 ~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
+.+.++.+... ...+..+..+|..+.++..-. .+.|.+.|......................|+| ++++++
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~ 187 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFL 187 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEE
T ss_pred cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceee
Confidence 99999887632 346788888998886665555 488888887765334333334455677899999 777765
Q ss_pred E-EECCCcEEEEECCCCCCceEEec----CCCCee-------EEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 002493 160 S-ASLDRTIKIWNLGSPDPNFTLDA----HQKGVN-------CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 160 ~-~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (915)
+ ...+..|-++|..+++....+.. |..++. ...|...+.....++.-....+.+||..+.+.++++..
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 5 45567899999988766554432 222222 22344433332333333344666789899999999997
Q ss_pred CccCeEEEEEeCCCCEEEEE----EcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecC--CeEEEe
Q 002493 228 HTHNVSAVCFHPELPIIITG----SEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDE--GTIMVK 298 (915)
Q Consensus 228 ~~~~i~~i~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~g~~d--g~v~i~ 298 (915)
...+ ..+..||+++++.+. ...++|.++|..+.+...++.... .++..+.|+++|+.+.++..+ |.|.++
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 7666 788999999999988 345789999999998777775432 358999999999977765433 346553
No 220
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=6.7e-15 Score=137.07 Aligned_cols=286 Identities=14% Similarity=0.156 Sum_probs=190.6
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
...+.+|.+.|+++.|..++. |.+|...|.|++|++.+......+. .|...|+.+.--|+ ..+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 345668999999999988776 9999999999999999998888888 67889999999987 46889999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEcc-----CCC---CEEEEEECCC-cEEEEECCCCCCceEE----ecCCCCeeEEEEEe
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNP-----KDT---NTFASASLDR-TIKIWNLGSPDPNFTL----DAHQKGVNCVDYFT 195 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p-----~~~---~~l~~~~~dg-~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~ 195 (915)
..+ .... .|.-.+.++.|.+ +.. ..++.-+... .+.+-|......+... .+..+.+.|..+..
T Consensus 85 a~s-~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 85 AYS-AFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred cCc-ceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 865 2111 2333344444433 111 1111111100 0122222111111111 12345566666433
Q ss_pred -CCCcCEEEEEeCCCeEEEEECCCCcEE----------EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC--cc
Q 002493 196 -GGDKPYLITGSDDHTAKVWDYQTKSCV----------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--YR 262 (915)
Q Consensus 196 -~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~--~~ 262 (915)
.+...++++|..+|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|++.. +.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 344557888999999999999987433 33345888999999988655667788888888998753 22
Q ss_pred --eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCc
Q 002493 263 --LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 263 --~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
...++......|..+...||++.+|+++.|+.++++.- .+..
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------------------------------rtl~ 284 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------------------------------RTLN 284 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe------------------------------------ccCC
Confidence 22334444567889999999999999999999998421 1112
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002493 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.+.+ +.-|...+++++|+|+..++|.++ |+++-+|+.
T Consensus 285 pLAV----LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAV----LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhh----hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1211 234445677888888877777777 778887753
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=134.77 Aligned_cols=191 Identities=16% Similarity=0.248 Sum_probs=141.2
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC----
Q 002493 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---- 175 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---- 175 (915)
..++.++|++.-..++++..|-.|++|+-... ............|++++|-|.....|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 35788999997667889999999999997763 33333334456799999999878888888865 4889986421
Q ss_pred CC----------ceEEecCCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002493 176 DP----------NFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 176 ~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
.+ +..-.+| .+|+++.|.++|. .+++++ .+..|.|||..++..+.......+.++-+.|||||.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1122233 6899999999987 466554 57889999999988765554456778999999999999
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeE
Q 002493 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v 295 (915)
++++-|+..++|...............++|...+|+|.|++|...+.....
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence 999999999999644332222223344699999999999998876654433
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.61 E-value=1.4e-12 Score=138.99 Aligned_cols=256 Identities=14% Similarity=0.114 Sum_probs=166.3
Q ss_pred CeEEE-EEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002493 28 PWILA-SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+++++ -..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..++... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 44444 4458999999999999999998765544567899999999999999999999999999999987544 468899
Q ss_pred EcCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeec-------CCccEEEEEEccCCCCEEEEEEC-CCcEEEEECCCCCC
Q 002493 107 VHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDP 177 (915)
Q Consensus 107 ~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~ 177 (915)
+|++|++++++. ..+.+.++|.++. +..+.+.. ....+..+..+| ....+++.-. .+.|.+.|....++
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccc
Confidence 999999998775 6899999999987 44443332 234677888888 5665555544 58888888877654
Q ss_pred ce-EEecCCCCeeEEEEEeCCCcCEEEE-EeCCCeEEEEECCCCcEEEEecC----CccCeEEE-------EEe--CCCC
Q 002493 178 NF-TLDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAV-------CFH--PELP 242 (915)
Q Consensus 178 ~~-~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i-------~~~--~~~~ 242 (915)
.. +............|.|+++ |+++ ...++.|.++|..+++.+..+.. |..++..+ .|. ..+.
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgr--y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGR--YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSS--EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred cceeeecccccccccccCcccc--eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 43 2223445667888998876 5554 45678999999998887665532 33333322 121 1222
Q ss_pred EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE
Q 002493 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g 289 (915)
..++.-....+.+||..+++.+..+....++ .-+..+|+++++.+.
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 2222222336777899999999999887666 778889999999887
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-14 Score=145.56 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=152.4
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-
Q 002493 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE- 139 (915)
Q Consensus 61 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 139 (915)
.+++|+++|..+++|+.||++|||++.+...+.....|...|.++.|+|||++|++.+.| ...||+.+++ .......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 679999999999999999999999998888888888999999999999999999999999 8999999988 3333322
Q ss_pred -cCCccEEEEEEccCCC---CE--EEEEECCCcEEEEECCCCCC-----ceEEecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002493 140 -GHSHYVMQVTFNPKDT---NT--FASASLDRTIKIWNLGSPDP-----NFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 -~~~~~v~~~~~~p~~~---~~--l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
...-....+.|+. ++ .+ ++.....+.|+.|++...+. ..+.......|.+++.+.+|+ +++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLALGTMD 302 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEEeccC
Confidence 2233456777876 44 22 23333345667666543221 222223456799999999988 89999999
Q ss_pred CeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002493 209 HTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
|.|.|++..+.++++.+ +.|..-|+.+.|+|+.+++++.+.+....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999888877665 4588899999999999999999988888877654
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-13 Score=153.50 Aligned_cols=256 Identities=15% Similarity=0.195 Sum_probs=179.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAG 75 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~g 75 (915)
+..+..+|..|+..|..++.++.. .++++|+.||+|++||...- +...++.....++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345667788899999999988866 89999999999999997642 1223344457789999999999999999
Q ss_pred eCCCeEEEEECCCC--ce-----eEEEecC-CCC-EEEEEEcC-CC-CEEEEEEcCCeEEEEECCCCeeE-EEEeecCCc
Q 002493 76 ADDMFIRVYNYNTM--DK-----VKVFEAH-TDY-IRCVAVHP-TL-PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSH 143 (915)
Q Consensus 76 ~~dg~i~vwd~~~~--~~-----~~~~~~~-~~~-i~~l~~s~-~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 143 (915)
+.||.|++.+++-. +. ......+ .+. +..-+|.. .+ ..|+.+..-+.|..||++..... ........+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999988752 11 1112222 222 33334433 22 36788888899999999865211 111222347
Q ss_pred cEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCC--cCEEEEEe-CCCeEEEEECCCC
Q 002493 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGD--KPYLITGS-DDHTAKVWDYQTK 219 (915)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~l~~~~-~dg~i~iwd~~~~ 219 (915)
.|++++.+| .++.+++|+..|.+.+||++-+.++..+. ++..++..+..+|-.. ...+.+++ ..+.|.+|++.+|
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 799999999 88999999999999999999888776653 3456777777776544 32334444 5788999999998
Q ss_pred cEEEEecCC-----------------ccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 220 SCVQTLEGH-----------------THN--VSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 220 ~~~~~~~~~-----------------~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+...+... ... ....++...+.++++|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 776655422 111 11222333446899999999999999653
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.8e-15 Score=151.69 Aligned_cols=230 Identities=11% Similarity=0.136 Sum_probs=191.4
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002493 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
.....+.++.+|..|+.|+..|.|-.+|+.+++....+.. ...|..+.|-.+.++++++-. ..++|||-..- -...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt--ElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT--ELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCCc--EEee
Confidence 3456789999999999999999999999999998888764 456899999998888887754 58999996543 3344
Q ss_pred eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002493 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
+..| ..|..+.|-| ..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-.. ++-+|...|+|.+|...
T Consensus 206 lk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPN 281 (545)
T ss_pred hhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCC
Confidence 4444 4588999999 778899999999999999999999988888888888888888765 78899999999999999
Q ss_pred CCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 218 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
..+++..+-.|.++|.+|++.++|.+++|.+.|..++|||+++...+.++.. .-+...+++|..| .||++ ....+.+
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~i 358 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALS-YGDHVQI 358 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeee-cCCeeee
Confidence 9999888888999999999999999999999999999999999887777665 3566778888665 34443 3445666
Q ss_pred e
Q 002493 298 K 298 (915)
Q Consensus 298 ~ 298 (915)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 5
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.6e-13 Score=151.86 Aligned_cols=262 Identities=14% Similarity=0.169 Sum_probs=188.2
Q ss_pred EECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCCCE
Q 002493 42 WNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
|+ ..|.++..+..|...|..++.++.. .++++||.||+|++||.... +...++....+.+.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 4677888888899988888888765 99999999999999997632 222334445678999999999999
Q ss_pred EEEEEcCCeEEEEECCCC--ee----EEEEe--ecCCccEEEEEEccCCCC-EEEEEECCCcEEEEECCCCCCceEE--e
Q 002493 114 VLSSSDDMLIKLWDWEKG--WM----CTQIF--EGHSHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTL--D 182 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~--~~----~~~~~--~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~ 182 (915)
+++++.||.|.+.+++.. .. +.... ......|..-++...... .++.+...+.|..||+++.....++ .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998762 11 11111 112222333344443445 7888888999999999887665544 3
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCC---CEEEE-EE-cCCcEEEE
Q 002493 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPEL---PIIIT-GS-EDGTVRIW 256 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~---~~l~~-~~-~dg~v~iw 256 (915)
...+.|++++.+|.+. ++++|+..|.+.+||++-+.++..+. ++..+|..++.+|-. ...++ |+ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~--WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN--WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce--EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4567899999999887 99999999999999999888887765 244678888877743 34444 44 56789999
Q ss_pred eCCCcceeeeeecCC-----------------c--cEEEEEEecCCCEEEEEecCCeEEEecCCCccee
Q 002493 257 HATTYRLENTLNYGL-----------------E--RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA 306 (915)
Q Consensus 257 d~~~~~~~~~~~~~~-----------------~--~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~ 306 (915)
++.+|....++.... . .....++...+..+.+|+.|+.|+.|....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999887665554331 0 1122334444668889999999999876555444
No 227
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1e-14 Score=149.09 Aligned_cols=168 Identities=24% Similarity=0.325 Sum_probs=138.6
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCCEEEEEEcC--CCCEEEEEEcCCeEEE
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHP--TLPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~i 125 (915)
+.+.+.+|.+.|.|+.|+.+|.+|++|++|-.+.|||.-..+++..+ .+|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999999999999999999999888888777 48999999999998 4567899999999999
Q ss_pred EECCC---------CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE----------EecCCC
Q 002493 126 WDWEK---------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----------LDAHQK 186 (915)
Q Consensus 126 wd~~~---------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~ 186 (915)
+|+.. .......+..|...|..++-.|...+.|.+++.||+|+-+|++....... +...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 22344556678889999999996679999999999999999987432111 111223
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002493 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
...|+.++|.... +|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~-~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPY-YLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCc-eEEecCCCchhhhhhhh
Confidence 4578889987665 99999999999999964
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.3e-14 Score=144.78 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=150.4
Q ss_pred EEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec-
Q 002493 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA- 97 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~- 97 (915)
.+++|+++|..|++|+.||.++||++.+...+.....|.+.|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999999888888888899999999999999999999999 899999999966655441
Q ss_pred -CCCCEEEEEEcCCC---CE-EE-EEEcCCeEEEEECCCCee----EEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 98 -HTDYIRCVAVHPTL---PY-VL-SSSDDMLIKLWDWEKGWM----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 98 -~~~~i~~l~~s~~~---~~-l~-~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
..-....+.|+.++ .+ ++ ....-+.|..|++..... ...........|++++.++ ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 22345667777766 22 22 223345566655432111 1111122234699999999 99999999999999
Q ss_pred EEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002493 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
.+++..+-+..+.. ..|...|+.+.|+|+.+ ++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 99999877665444 57889999999999887 68888888877777654
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.4e-13 Score=139.05 Aligned_cols=276 Identities=12% Similarity=0.156 Sum_probs=203.3
Q ss_pred cCCCCEEEEEEcCCCCeEE-EEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 13 QRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.|+..-+.|..+|||+|++ +|.+.-.|++||+..-.+...-......|.-.-.+.|-..++.-..|.+|-+-..- |..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 4788889999999999765 67778999999987765443322234456666666676777777778877665422 211
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
..+. -+..-+.|+++.-..-|++++....|+-++++.| .....+....+.+.++..++ -..+|++|+.+|.|.+||
T Consensus 128 -y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 128 -YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecC-ccceEEecccCceEEEec
Confidence 1111 1223355666654444666666668999999998 56666777778899999999 788999999999999999
Q ss_pred CCCCCCceEEec------CCC-----CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeC
Q 002493 172 LGSPDPNFTLDA------HQK-----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHP 239 (915)
Q Consensus 172 ~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~ 239 (915)
.+....+.++.. +.+ .|+++.|+.+|- .+++|..+|.|.|||+++.+++..-. +..-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 988776655532 222 389999987665 69999999999999999988765543 3345788899977
Q ss_pred C--CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 240 E--LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 240 ~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
. ++.+++.. ...++|||-.+|+....+... ..+..+|+-|++.++.++-+++.+..
T Consensus 282 ~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 5 44566554 458999999999988877765 45999999999999999888776654
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.9e-13 Score=134.93 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=193.9
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEE-cCCcEEEEECCCCceeEEE------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002493 13 QRSERVKSVDLHPSEP-WILASL-YSGTVCIWNYQSQTMAKSF------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~-~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vw 84 (915)
....+|++++|--+++ -++.+. .+..+..+.+....+...+ ....++|..++.. ..+|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 4556788888887665 233443 5666777776665544432 3345667666653 3468888999999999
Q ss_pred ECCCCc----eeEEEecCCCCEEEEEEcCCCCEEE-EEEcC--CeEEEEECCCCeeEEEEeecC-----------CccEE
Q 002493 85 NYNTMD----KVKVFEAHTDYIRCVAVHPTLPYVL-SSSDD--MLIKLWDWEKGWMCTQIFEGH-----------SHYVM 146 (915)
Q Consensus 85 d~~~~~----~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~-----------~~~v~ 146 (915)
..+.+. ++..+..+ ..+..+.-++..++|+ +|+.. ..+.+||+.+. .+++.+. .-.++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeec
Confidence 988443 23333333 3466677777666555 58887 78999999876 3333321 23467
Q ss_pred EEEEccCC--CCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE
Q 002493 147 QVTFNPKD--TNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 147 ~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
++.|.| + ...|++++.-+.+++||.+.+ +|+..+.....++.++...|+++ ++++|..-|.+..||++.++.+.
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCceeec
Confidence 888988 5 789999999999999999865 46778888899999999999988 79999999999999999998776
Q ss_pred E-ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002493 224 T-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 224 ~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.+++...... ..++++-+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccEEEecCC
Confidence 6 8889999999999999999999999999999999986666544322 45566665544
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=2e-13 Score=132.13 Aligned_cols=245 Identities=18% Similarity=0.313 Sum_probs=175.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-----eeEEEEecC------------CCEEEEEEeCCCC--EEEE
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTE------------LPVRSAKFVARKQ--WVVA 74 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 74 (915)
..+-|.++.|..+|.+||+|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999999743221 223344443 2588899998764 5777
Q ss_pred EeCCCeEEEEECCCCce-----------------------------------eEEE-ecCCCCEEEEEEcCCCCEEEEEE
Q 002493 75 GADDMFIRVYNYNTMDK-----------------------------------VKVF-EAHTDYIRCVAVHPTLPYVLSSS 118 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~i~~l~~s~~~~~l~~~~ 118 (915)
.+.|.+|++|.+..... .+.+ .+|.-.|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999997642111 0111 2577779999999999877775
Q ss_pred cCCeEEEEECCCCeeEEEEe--ecC-----CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc------eE-----
Q 002493 119 DDMLIKLWDWEKGWMCTQIF--EGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN------FT----- 180 (915)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~--~~~-----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------~~----- 180 (915)
+|-.|.+|+++-......+. +++ ..-|++..|+|...+.|+-++..|+|++.|++..... +.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56789999987432333322 222 2358899999988899999999999999999853211 11
Q ss_pred -----EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-CCcEEEEecCCcc------------C---eEEEEEeC
Q 002493 181 -----LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTH------------N---VSAVCFHP 239 (915)
Q Consensus 181 -----~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~------------~---i~~i~~~~ 239 (915)
+..--..|..+.|+++|+ |+++-. --+|++||+. ..+++.+++.|.. . -..++|+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGr--yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGR--YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCc--EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 111224678899999987 666543 4689999994 4566666654431 1 24578999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcc
Q 002493 240 ELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++++|+..+.+++++...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999976554
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-12 Score=144.13 Aligned_cols=235 Identities=13% Similarity=0.076 Sum_probs=162.2
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.+||...... +.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3699999765543 445556778999999999999987643 45799999988764332 223334557899999998
Q ss_pred EEEE-EcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECC-Cc--EEEEECCCCCCceEEecCCCC
Q 002493 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.+| .|++||++++ ...+.. .+...+....|+| +++.|+..+.+ +. |.++|+.++.. ..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg-~~~~lt-~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC-CEEEcc-CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 8865 4344 5899999887 444433 3345678899999 78877766653 44 55557766543 344444445
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc---EEEEeCCCc
Q 002493 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT---VRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---v~iwd~~~~ 261 (915)
.....|+|+|+ +++..+.+ ..|.+||+.++... .+... .......|+|||++|+.++.++. +.++++ +|
T Consensus 333 ~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 333 NQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred ccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 56789999987 56554432 45888999877643 33322 22346789999999999887764 677776 46
Q ss_pred ceeeeeecCCccEEEEEEecC
Q 002493 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 666667766677888888873
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3e-14 Score=144.03 Aligned_cols=254 Identities=16% Similarity=0.226 Sum_probs=191.9
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCC--CCEEEEEEcCCeEEE
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~--~~~l~~~~~dg~i~i 125 (915)
+...+..|.+.|..+.|+..|..|++|+.|..|.+||+.+++....+. +|...|..-.|-|. .+.+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 445677899999999999999999999999999999999988777664 78888887788774 457999999999999
Q ss_pred EECCCCeeE--EEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCC---CeeEEEEEeCC
Q 002493 126 WDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK---GVNCVDYFTGG 197 (915)
Q Consensus 126 wd~~~~~~~--~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~v~~~~~~~~~ 197 (915)
-.+.....+ ...+..|.++|.-++.-|.+...|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876533222 345667999999999999888999999999999999999877655442 2223 45677777766
Q ss_pred CcCEEEEEeCCCeEEEEECCCCc------EEEEec------CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC--c--
Q 002493 198 DKPYLITGSDDHTAKVWDYQTKS------CVQTLE------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--Y-- 261 (915)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~--~-- 261 (915)
.. .+++|+.|..+++||.+.-. .+..+. .....|++++++.++.-+++.-.|-.|+++.-.. |
T Consensus 294 t~-~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TN-EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred cc-ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 79999999999999986421 122222 2334699999997777666667787899995332 2
Q ss_pred --------ceee-eeecCC--ccEEEEE-EecCCCEEEEEecCCeEEEecCCCc
Q 002493 262 --------RLEN-TLNYGL--ERVWAIG-YMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 262 --------~~~~-~~~~~~--~~v~~i~-~~~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
..+. .+++|. ..|..+- |-|...++++|++-|.|.||..+..
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 1112 244553 3355555 5788899999999999999854443
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.55 E-value=4.7e-12 Score=129.32 Aligned_cols=270 Identities=12% Similarity=0.111 Sum_probs=186.1
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC------------
Q 002493 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM------------ 79 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg------------ 79 (915)
....-++..++|||.|.+|++....| |.+|....+..+..+. | ..|..+.|+|++++|.+-+..+
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 33556789999999999999877554 9999988877555554 3 4589999999999999865433
Q ss_pred ---eEEEEECCCCceeEEEecCCCC--EE-EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec-CCccEEEEEEcc
Q 002493 80 ---FIRVYNYNTMDKVKVFEAHTDY--IR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNP 152 (915)
Q Consensus 80 ---~i~vwd~~~~~~~~~~~~~~~~--i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p 152 (915)
.+.+||..+|..+..+.....+ .+ -+.|+-+.++++-.. ...++|+++ +......-+.. ....|....|+|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 4999999999999998866655 55 688999988877543 346999997 33122211111 125578888998
Q ss_pred C-CCCEEEE-----EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE-----------eCCCeEEEEE
Q 002493 153 K-DTNTFAS-----ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG-----------SDDHTAKVWD 215 (915)
Q Consensus 153 ~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-----------~~dg~i~iwd 215 (915)
. +...|+. .+..+++++|.+..++.+.+-.-....-..+.|.+.|+ ++++- .....++|++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK--YLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc--eEEEEEEEeeecccceeccceEEEEe
Confidence 4 3334443 35578899999986665544333333335677887776 44432 1235688888
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEE--EcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002493 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~d 292 (915)
++...+.... ...++|...+|.|.++.+++. -.+..+.++|++.. +...+ +...=..+.|+|.++++++++-+
T Consensus 262 ~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 262 ITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCC
Confidence 8744433332 567899999999988866654 47788999998754 43333 33444678899999998886543
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.7e-12 Score=144.01 Aligned_cols=234 Identities=13% Similarity=0.040 Sum_probs=160.4
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 469999975 4444556667788999999999999998764 3479999998876543 3334455568899999998
Q ss_pred EE-EEEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CCc--EEEEECCCCCCceEEecCCCC
Q 002493 114 VL-SSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+| .|++||+.++ ...+ +..+.......+|+| +++.++.++. +|. |.++++.+++. ..+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g-~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSR-QLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 76 445555 5999999887 3333 344545556789999 7777776653 444 66777766653 333333344
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCc
Q 002493 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~ 261 (915)
....+|+|+|+ +|+..+.+ ..|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++. +
T Consensus 338 ~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 55789999998 56554433 26999999877654 333 22234567999999988876653 357888874 4
Q ss_pred ceeeeeecCCccEEEEEEec
Q 002493 262 RLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~ 281 (915)
.....+..+.+.+...+|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 55555555556677777876
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.8e-13 Score=146.12 Aligned_cols=235 Identities=13% Similarity=0.026 Sum_probs=157.1
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46888886 454555566677889999999999999887642 469999999887643 3334456678999999998
Q ss_pred EE-EEEcCCeEEEEE--CCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CCcEEEEEC--CCCCCceEEecCCCC
Q 002493 114 VL-SSSDDMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNL--GSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|...+|. ..++ . ...+..+........|+| +++.++..+. +|...+|.+ .++.. ..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 87 456677756654 4444 2 333444555567789999 7777765553 456666654 44432 233223333
Q ss_pred eeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEEEEeCCCc
Q 002493 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
.....|+|+|+ +|+..+.++ .|.+||+.+++...... . .......|+|||+.|+.++.++ .+.+.+. ++
T Consensus 330 ~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 330 NTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred cCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 45678999988 566655443 69999998876543322 2 2346789999999888777544 3556665 46
Q ss_pred ceeeeeecCCccEEEEEEecC
Q 002493 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 666666555566777888774
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.55 E-value=1.8e-08 Score=119.44 Aligned_cols=234 Identities=11% Similarity=0.133 Sum_probs=151.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCC--C--eEEEEECCCCc---eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002493 58 LPVRSAKFVARKQWVVAGADD--M--FIRVYNYNTMD---KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~~d--g--~i~vwd~~~~~---~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
..+...+|.+..+.+.+.... . .|.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 356667777766554443332 1 23333332222 222222 24568999999999999999999999999
Q ss_pred E----ECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC---------------C--------CCCc
Q 002493 126 W----DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------------S--------PDPN 178 (915)
Q Consensus 126 w----d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------------~--------~~~~ 178 (915)
. +.... .......-...|.+++||| |..+++..+.++++.+.+.. . |+..
T Consensus 102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDED--EIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCc--eeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 55543 3444445567899999999 99999999999988776521 0 0111
Q ss_pred eEEec------------------------CCCCeeEEEEEeCCCcCEEEEEeC------CCeEEEEECCCCcEEEEecCC
Q 002493 179 FTLDA------------------------HQKGVNCVDYFTGGDKPYLITGSD------DHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 179 ~~~~~------------------------~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.+|.+ ....-..++|-.+ +.|+++.+- -+.+++|+-. |....+-..-
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGD--G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGD--GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCC--CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 11100 1122345556544 448888764 2579999954 7655444433
Q ss_pred ccCeEEEEEeCCCCEEEEEEc---CCcEEEEeCCCcceeeeeec----CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
.+--.+++|.|.|++|++... ...|.+|. ++|-....+.. ....|..+.|++++..||+...+. |.+|.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 333457899999999998764 34688888 55655554443 346799999999999999988665 77773
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.4e-12 Score=130.65 Aligned_cols=271 Identities=11% Similarity=0.097 Sum_probs=180.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-----C-----CCeEEEE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-----D-----DMFIRVY 84 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-----~-----dg~i~vw 84 (915)
+..+...++|++|+++|.+. +..|.|++..++..+.+... ..+.++.|+|.|.+|.+-- . .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578899999999888775 67899999888864443332 2789999999999887631 1 2357899
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEE------------------
Q 002493 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM------------------ 146 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~------------------ 146 (915)
+..++.....+......-++..|++|..+.+- -..+.+.+|++.+.......+ |...|.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 99885544444322222256777776653221 122456666655432222221 222333
Q ss_pred ----------------------------------EEEEccCCCCEEEEEEC--C---------CcEEEEECCCCCCceEE
Q 002493 147 ----------------------------------QVTFNPKDTNTFASASL--D---------RTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 147 ----------------------------------~~~~~p~~~~~l~~~~~--d---------g~i~i~d~~~~~~~~~~ 181 (915)
.+.|++....+|+..+. | .++++.++.+......
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~- 266 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP- 266 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-
Confidence 34455433333333322 1 2344555442222222
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeC
Q 002493 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHA 258 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~ 258 (915)
-...++|.++.|++++..-.++-|..-.++.|||++ +.++..+. .++-.++-|+|.|++|+.+|.+ |.|-+||+
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 234789999999999987556667778899999987 77776664 5667789999999999988754 78999999
Q ss_pred CCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 259 TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
.+.+++..+..... +-+.|+|||.++++++..-.+++
T Consensus 344 ~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 344 PNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred cchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 99888887776533 56889999999999998877777
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.1e-12 Score=144.64 Aligned_cols=222 Identities=9% Similarity=0.021 Sum_probs=154.8
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i~ 82 (915)
+.+..+.+.+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445566778999999999999987643 3579999998876433 22233445678999999998865 3344 699
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
+||+++++... +..+...+....|+|+|+.|+.++.+ | .|+++|+.++ ..... ..+.....+..|+| +++.++
T Consensus 271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~l-t~~~~~~~~~~~Sp-DG~~Ia 346 (429)
T PRK03629 271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQRI-TWEGSQNQDADVSS-DGKFMV 346 (429)
T ss_pred EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEEe-ecCCCCccCEEECC-CCCEEE
Confidence 99998876544 33344567889999999998877764 3 4555677766 33222 33344456789999 788777
Q ss_pred EEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe---EEEEECCCCcEEEEecCCccCeE
Q 002493 160 SASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT---AKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.+ ..|.+||+.++... .+.. ........|+|+|. +|+.++.++. +.++++. |.....+.++.+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGT--MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCC--EEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 76543 35888999877533 3332 22335678999988 5777766653 6777874 666677777888888
Q ss_pred EEEEeCC
Q 002493 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 8999873
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.5e-12 Score=140.92 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=161.6
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 379999974 4455667778889999999999999988764 468999999887653 44456667888999999998
Q ss_pred EE-EEEcCCe--EEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002493 114 VL-SSSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|. |++||+.++ ... .+..+........|+| +++.++..+. +| .|.++|+.++.. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~-~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSG-TTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCC-ceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 76 4455554 778898877 333 3444556677899999 7887776653 33 588888876554 344434555
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC------CcEEEEeC
Q 002493 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHA 258 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~v~iwd~ 258 (915)
+....|+|+++ .|+....+ ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+ ..+.++|+
T Consensus 336 ~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 336 YSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 67788999998 56554432 3688889765443 3333 22346788999999988765543 25788887
Q ss_pred CCcceeeeeecCCccEEEEEEecC
Q 002493 259 TTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
..+.. ..+.. .+.+...+|+|-
T Consensus 412 ~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCce-EEccC-CCCccCcccCCC
Confidence 65443 34432 334566777763
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.4e-11 Score=124.78 Aligned_cols=321 Identities=15% Similarity=0.255 Sum_probs=201.0
Q ss_pred CCcEEEEECCCCcee-EEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002493 36 SGTVCIWNYQSQTMA-KSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
+-.+.+|+....... ..+.. ...+++..+++++|++++.+ .+..+.|++..++..+.+.... .+.++.|||-|.
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence 334788886542222 22322 24557888999999888776 4578999999888654444432 789999999999
Q ss_pred EEEEE-----Ec-----CCeEEEEECCCCeeEEEEee-cCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE
Q 002493 113 YVLSS-----SD-----DMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 113 ~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (915)
+|.+= .. .-.+.+|+++++ .....+. ..... ++..|++ |.. +++--..+.+.+|++.+.+.+. -
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~-~ 161 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ-H 161 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-ccccccc-chh-hhhhhhcceEEEEecCCcccee-e
Confidence 88752 11 235779999985 3333332 22222 6888887 443 3333345789999998754332 2
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEE-----EeCCCeEEEEECCCCcEEEEe---cCCccCeEEEEEeCCCC-EEEEEE--cC
Q 002493 182 DAHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELP-IIITGS--ED 250 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~-~l~~~~--~d 250 (915)
.-|...|+.+.++|.+....+++ .+.-+.|+||.+.....-..+ .-....=..+.|++-|. +|+..+ -|
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 34678899999999876656665 345578999987632211111 01122234577888776 222222 22
Q ss_pred ---------CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE--ecCCeEEEecCCCcceeEecCCCcEEEEee
Q 002493 251 ---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG--YDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (915)
Q Consensus 251 ---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g--~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~ 319 (915)
.++++.++......-.+ ...++|.++.|+|+|+-+++. ..--.+.| ++..|+.++.
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti----------fnlr~~~v~d-- 308 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI----------FNLRGKPVFD-- 308 (566)
T ss_pred CCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEE----------EcCCCCEeEe--
Confidence 35888887733333333 235899999999999887764 33333443 3333333321
Q ss_pred CceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccCc---cce
Q 002493 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSF---GSA 392 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~---~~~ 392 (915)
+ .+.+-..+-|+|.|++|++++ .|.+-+|++...+.... ...
T Consensus 309 ----------------f---------------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t 357 (566)
T KOG2315|consen 309 ----------------F---------------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT 357 (566)
T ss_pred ----------------C---------------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc
Confidence 1 122345889999999999987 58899999887543222 334
Q ss_pred eEEEEecCCcEEEEec
Q 002493 393 LEFVWSSDGEYAVRES 408 (915)
Q Consensus 393 ~~~~~s~~~~~l~~~~ 408 (915)
+-+.|+|||+++++++
T Consensus 358 t~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTAT 373 (566)
T ss_pred eEEEEcCCCcEEEEEe
Confidence 6678999998887765
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=8.2e-12 Score=128.52 Aligned_cols=335 Identities=15% Similarity=0.181 Sum_probs=212.0
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEC
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----------DMFIRVYNY 86 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----------dg~i~vwd~ 86 (915)
-+-+.|||.|.||++--..| |.+|--.+-..++.|. |. .|.-+.|||+.++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999988776 8899877766666665 54 4889999999999998653 258999999
Q ss_pred CCCceeEEEecCC--CCE-EEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 87 NTMDKVKVFEAHT--DYI-RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 87 ~~~~~~~~~~~~~--~~i-~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
.||...+.|.... ..+ .-..||.|++++|.-..+ .|.||+..+- .+...-.-....|....|+| .+++|+--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~Kslki~gIr~FswsP-~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKKSLKISGIRDFSWSP-TSNLLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeecccccCCccccCcccCC-CcceEEEEcc
Confidence 9999988887522 222 346899999999977765 6999987764 22222222345688899999 6777764332
Q ss_pred -----CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC----------CCeEEEEECCCCcEEEEecCC
Q 002493 164 -----DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD----------DHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 164 -----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 228 (915)
-..+.+-.+.+++.+++-..+.-.-..+.|-.+|+ +|+.--. -..+.|+.++........-..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd--yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD--YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc--EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 12455666666555554443333334456666666 6665321 123556666654432222235
Q ss_pred ccCeEEEEEeCCCCEEEEEEc---CCcEEEEeCCC-c---ceeeeeecCCccEEEEEEecCCCEEEEEec---CCeEEEe
Q 002493 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATT-Y---RLENTLNYGLERVWAIGYMKSSRRIVIGYD---EGTIMVK 298 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~---dg~v~i~ 298 (915)
...|...+|-|.|..+++-+. ..++.+|.+.+ . +++..+. ....+.+.|+|.|++++++.- .|.+.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 567889999999987776543 34688888763 2 2333333 245678999999999998653 3333331
Q ss_pred cCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc------
Q 002493 299 IGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG------ 372 (915)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~------ 372 (915)
+.+ ..+-+.... .. ....+.+.|.|.|+++++++
T Consensus 523 ----------D~~------------------------~a~~k~~~~-----~e-h~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 523 ----------DTD------------------------YADLKDTAS-----PE-HFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred ----------ecc------------------------hhhhhhccC-----cc-ccccccceECCCCCEEEEeeehhhhc
Confidence 100 000000000 01 12346789999999999885
Q ss_pred -CCcEEEEEeeccc--ccCccceeEEEEecCCc
Q 002493 373 -DGEYIIYTALAWR--NRSFGSALEFVWSSDGE 402 (915)
Q Consensus 373 -~~~~~i~~~~~~~--~~~~~~~~~~~~s~~~~ 402 (915)
+..+.+|+..+.- ....+....+.|-|.--
T Consensus 563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPp 595 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPP 595 (698)
T ss_pred cccceEEEEeecHHHHHHHHHHHHhhccCCCCC
Confidence 5677888765431 22223344556655443
No 243
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=8.9e-12 Score=133.03 Aligned_cols=442 Identities=12% Similarity=0.129 Sum_probs=266.2
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC------------CEEEEEeCCCeEEE
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK------------QWVVAGADDMFIRV 83 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~g~~dg~i~v 83 (915)
..-.++.|+|.| ++|.|+ ...|.+-|..+-+.++++..|...|+.+.|.|-. -.||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346789999988 577776 4579999999999999999999999999998831 25677778999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCC---C-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
||...+..+..+..|.+++..++|-+. . ..|+.-....+|.+|+..+|...-+ .........|+.+.|-+.+.|+
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-cccCCcceeeeeeCCCCcceEE
Confidence 999999888889999999999999763 3 3566667778999999999843333 2333355778999998888888
Q ss_pred EEECCCcEEEEECCCCC----C--ceEEe-cCCC-------------------------CeeEEEEEeCCCcCEEEEEeC
Q 002493 160 SASLDRTIKIWNLGSPD----P--NFTLD-AHQK-------------------------GVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~----~--~~~~~-~~~~-------------------------~v~~~~~~~~~~~~~l~~~~~ 207 (915)
.-+..|.+.+.+.-..+ + ...+. .|.. ....++|+|.-++ ++....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~~ 250 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFITF 250 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEEe
Confidence 88888888777653211 1 11111 1111 0112455666554 333344
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC--EEEEEEcCCcEEEEeCCCcce----------------eeeeec
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRIWHATTYRL----------------ENTLNY 269 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~v~iwd~~~~~~----------------~~~~~~ 269 (915)
...+.++|++-..++....-..+.+.-+.+-|+++ .|++...||.+.+|-.+.... ...+..
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 66799999998888888776677777788877664 789999999999997543111 111111
Q ss_pred C-CccEEEEEEecC-CCEEEEEecCCeEEEecCCCccee------------EecCCCcEEEEeeCceEEEEeeeccccee
Q 002493 270 G-LERVWAIGYMKS-SRRIVIGYDEGTIMVKIGREEPVA------------SMDNSGKIIWAKHNEIQTVNIKSVGADYE 335 (915)
Q Consensus 270 ~-~~~v~~i~~~~~-~~~l~~g~~dg~v~i~~~~~~~~~------------~~~~~g~~~~~~~~~i~~~~~~~~~~~~~ 335 (915)
. .-++......|. ...+++-..+|.+.+|..+...+. .++.++............+...+ .
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----~ 405 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-----S 405 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC-----C
Confidence 0 112222333444 445556667777777754422211 11222221111111111111000 0
Q ss_pred ccCCceeeeeeeecCCcccCCceEEECCCC-------CEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCc
Q 002493 336 VTDGERLPLAVKELGTCDLYPQSLKHNPNG-------RFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGE 402 (915)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g-------~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~ 402 (915)
.+.|..+.. ... --.++...--|.| .++|+|+ .|.+.+++..... ..+.+.+.++-|....+
T Consensus 406 h~sGs~~~~-~~p----~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss 480 (1062)
T KOG1912|consen 406 HSSGSTCVR-MRP----MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS 480 (1062)
T ss_pred CCCCceeee-ccc----CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee
Confidence 111221110 000 0011111222222 2677887 8999999887653 23446677788876665
Q ss_pred EEEEecC----------CeEEEeccCccceeeeec----Ccccceee----cCcEEEEeeCC-eEEEEeccCCcEEEEEE
Q 002493 403 YAVRESS----------SKIKIFSKNFQEKRSVRP----TFSAERIY----GGTLLAMCSND-FICFYDWAECRLIRRID 463 (915)
Q Consensus 403 ~l~~~~~----------~~v~v~~~~~~~~~~~~~----~~s~~~i~----~g~~La~~~~~-~v~~~d~~~~~~i~~~~ 463 (915)
++-...+ +.+.|-++...-.+.++. .-+|-.+. .+++|++.-.+ -+.+||+.+..+++...
T Consensus 481 lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 481 LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHh
Confidence 5543321 123333322111111110 11111111 48899999988 99999998887766544
Q ss_pred --cc-ccEEEEc
Q 002493 464 --VT-VKNLYWA 472 (915)
Q Consensus 464 --~~-i~~v~~s 472 (915)
-+ ++.+.|+
T Consensus 561 ~a~P~it~leWs 572 (1062)
T KOG1912|consen 561 LALPLITVLEWS 572 (1062)
T ss_pred hcCCcEEEEeec
Confidence 23 7888888
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.5e-12 Score=143.91 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=149.9
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCCeEEEE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVY 84 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg~i~vw 84 (915)
+.+..+.+.+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4456678889999999999999987652 359999998886543 3434456778999999998875 5667765555
Q ss_pred --ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEE--CCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 85 --NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 85 --d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
|..++. ...+..+........|+|||+.|+..+. +|...+|. ..++ ...... .+........|+| +++.++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-AAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-ceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 454443 4555555556677899999998886664 45555554 4454 222222 2223345678999 888888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-CC--eEEEEECCCCcEEEEecCCccCeE
Q 002493 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.++ .|.+||+.+++.. .+.. ........|+|+++ .|+..+. .| .+.+.+. ++.....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCC--EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 776554 5999999887643 3332 23346789999988 4555443 33 3566666 3666666665667778
Q ss_pred EEEEeCC
Q 002493 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 8888874
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=5.9e-11 Score=121.41 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=165.3
Q ss_pred EEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc
Q 002493 40 CIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (915)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 119 (915)
..|+..+...-..+....-++..+.|||.|.+|++....| |.+|....+..+..+. | ..|..+.|||.++||.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 3455555444445555667899999999999999876655 8899988777666665 3 35899999999999998654
Q ss_pred C---------------CeEEEEECCCCeeEEEEeecCCcc--EE-EEEEccCCCCEEEEEECCCcEEEEECCCCCC-ceE
Q 002493 120 D---------------MLIKLWDWEKGWMCTQIFEGHSHY--VM-QVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFT 180 (915)
Q Consensus 120 d---------------g~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 180 (915)
. ..+.+||+.++ .+...+.....+ .+ -+.|+- +.++++-- ....++|+++ ++.. ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCc
Confidence 3 35999999998 666666655544 33 566776 45554433 3457899997 3221 111
Q ss_pred Ee-cCCCCeeEEEEEeCCCcCEEEE-----EeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE------
Q 002493 181 LD-AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS------ 248 (915)
Q Consensus 181 ~~-~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------ 248 (915)
+. ....+|....|+|.+++..|+. ++..+.+++|.+..++.+.+..-....-..+.|.+.|.++++--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1236688889999877666554 45678999999987777665543343445688999998776421
Q ss_pred -----cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 249 -----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 249 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
....++|+++.. +-+.....-.++|...+|.|.++.+++.+
T Consensus 248 nKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 248 NKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEe
Confidence 124578888763 32222224468999999999998887644
No 246
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.5e-12 Score=142.72 Aligned_cols=222 Identities=12% Similarity=0.075 Sum_probs=153.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg--~i 81 (915)
.+.+..|...+.+.+|+|||+.|+..+. ...|.+||+.+++... +....+...+.+|+|+|+.|+. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3456667788999999999999998764 3469999998876543 3334555668899999998864 45555 69
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEE
Q 002493 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+.......+|+|+|++|+.++. +| .|+++++.++. ..... .+.......+|+| +++.+
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~~g~~~~~~~~Sp-DG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-FQGNYNARASVSP-DGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-cCCCCccCEEECC-CCCEE
Confidence 9999988764 345555555678899999999887764 34 47777777663 32222 2334455789999 78888
Q ss_pred EEEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCe
Q 002493 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i 232 (915)
+..+.++ .|.+||+.+++.. .+. +........|+|+++ +++..+. .+.|.+++.. +.....+..+.+.+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEEcccCCCCC
Confidence 7765443 5999999877644 333 222445678999988 4555443 3468888875 55555565556667
Q ss_pred EEEEEeC
Q 002493 233 SAVCFHP 239 (915)
Q Consensus 233 ~~i~~~~ 239 (915)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 7788876
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=1.9e-12 Score=125.59 Aligned_cols=212 Identities=21% Similarity=0.355 Sum_probs=164.4
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEE-CCCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWN-YQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i 81 (915)
++.+.+.++||.+.|.....-|..+-+++.+.|.+++||- .++++.-..+. ..+.+++++.+.+....|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 5667889999999999999999888899999999999995 33444433332 346789999999999999999999999
Q ss_pred EEEEC----CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---------------------------
Q 002493 82 RVYNY----NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--------------------------- 130 (915)
Q Consensus 82 ~vwd~----~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------- 130 (915)
.-+.+ +....++....|...+..+-|+-....+++.+.|..+.---.+.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 98864 34455566667888888888877777777766654432111111
Q ss_pred -------------CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEeC
Q 002493 131 -------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTG 196 (915)
Q Consensus 131 -------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 196 (915)
...+...+.+|...+.+++|.| ....+.+|..|..+.+||+...+- ...+.+|...|..+++.+-
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 1134445678999999999999 888999999999999999976553 3566788899998888776
Q ss_pred CCcCEEEEEeCCCeEEEEECCC
Q 002493 197 GDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
.. .+++++.||.|.+|++..
T Consensus 252 t~--~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 TR--QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred he--eeeeccCCCeEEEEeccc
Confidence 65 699999999999999753
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=6.1e-13 Score=136.21 Aligned_cols=137 Identities=19% Similarity=0.431 Sum_probs=113.8
Q ss_pred CCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCC--------------Cc--------------eeEEEEecCCCEEEEEE
Q 002493 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQS--------------QT--------------MAKSFEVTELPVRSAKF 65 (915)
Q Consensus 15 ~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~--------------~~--------------~~~~~~~~~~~v~~~~~ 65 (915)
..+|+|+.|-|.+. .++++-.+|.+.+||..- +. .+..+....++|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999554 445555699999997521 11 11122223457888999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccE
Q 002493 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV 145 (915)
Q Consensus 66 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 145 (915)
+|||++||+.+.||.++|||+.+.+.+..++.--+...|++|||||+||++|++|-.|.||.+... +++..-.+|.+.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence 999999999999999999999998888888877888999999999999999999999999999987 6777778999999
Q ss_pred EEEEEcc
Q 002493 146 MQVTFNP 152 (915)
Q Consensus 146 ~~~~~~p 152 (915)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999987
No 249
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=1.6e-12 Score=133.23 Aligned_cols=245 Identities=16% Similarity=0.244 Sum_probs=171.5
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee----EEEEecCCCEEEEEE-----eCCCCEEEEEeCCCeEEEEECC
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA----KSFEVTELPVRSAKF-----VARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~-----~~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.++....+-.|.+|...- ...+++|+++.+... ....-......|-+| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344555555667766543 456899988753221 111111122334444 3456678899889999998865
Q ss_pred CCceeEEEe----cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEcc-CCCCEEEEE
Q 002493 88 TMDKVKVFE----AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASA 161 (915)
Q Consensus 88 ~~~~~~~~~----~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~ 161 (915)
..+..+.+. .....++|+.|-|.+. .++++..+|.+++||..-. ...+...|.+ .++..|...
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCeeEEe
Confidence 522222121 2346899999999554 5667778999999986321 1111111211 145555554
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002493 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
..-+. .+..++..+....+.|+..+|+|+|. +|++.+.||.++|||+.+.+.+-.++..-+...|++|||||
T Consensus 273 t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 273 TSKSK------KTRNPVARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eeecc------ccCCccceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence 32211 12255656655667999999999887 89999999999999999888877777778889999999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002493 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
++|++|++|--|.+|.+...+.+..-++|...|..++|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999998
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=7.2e-12 Score=139.27 Aligned_cols=222 Identities=11% Similarity=0.030 Sum_probs=154.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002493 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-g~~dg--~i 81 (915)
.+.+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+. .+.++ .|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3556778889999999999999988764 467999999888653 45556677889999999998764 44454 47
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEE
Q 002493 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+........|+|+|+.|+..+. + ..|++||+.++ ...... .+...+....|+| +++.+
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt-~~~~~~~~~~~Sp-dG~~i 348 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRIS-FGGGRYSTPVWSP-RGDLI 348 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEee-cCCCcccCeEECC-CCCEE
Confidence 7889887654 445556666778999999999887764 3 36888898776 333332 2345567788999 78888
Q ss_pred EEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-C-----CeEEEEECCCCcEEEEecCCc
Q 002493 159 ASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D-----HTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 159 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~ 229 (915)
+..+.+ ..|.+||+.++. ...+. ....+....|+|+|+ .|+..+. . ..+.++|+..+.. ..+. ..
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~ 422 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TP 422 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CC
Confidence 776543 358888886543 33333 233567889999988 4544333 2 3688888865544 4444 24
Q ss_pred cCeEEEEEeCC
Q 002493 230 HNVSAVCFHPE 240 (915)
Q Consensus 230 ~~i~~i~~~~~ 240 (915)
..+...+|+|-
T Consensus 423 ~~~~~p~Wsp~ 433 (435)
T PRK05137 423 GDASDPAWSPL 433 (435)
T ss_pred CCccCcccCCC
Confidence 45667778763
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.1e-12 Score=126.44 Aligned_cols=221 Identities=9% Similarity=0.122 Sum_probs=169.0
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEE-EEeCC--CeEEEEE
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVV-AGADD--MFIRVYN 85 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~d--g~i~vwd 85 (915)
..+.+|..++.. ..+|++|..+|.+.+|..+.+. .+..+..+ ..+..+.-++....|+ +|+.. ..+.+||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 334455555544 3468888889999999987442 22233323 4566777777665554 58888 8899999
Q ss_pred CCCCceeEEEecCC---------CCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCC
Q 002493 86 YNTMDKVKVFEAHT---------DYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 86 ~~~~~~~~~~~~~~---------~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (915)
++..+++..-+.-+ -.++.+.|-+. ...|++++.-+.+++||.+.++.+...+.-...+++++...| +
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~ 258 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-S 258 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-C
Confidence 99875554433211 13677888887 778999999999999999999888888888889999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceE-EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeE
Q 002493 155 TNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
++.+++|..-|.+..||+++++.... +.+..+.|.++..+|... ++++++-|+.|+|+|+++.+.+...- -...++
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt 335 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLT 335 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchhhhhhh-hhcccc
Confidence 99999999999999999999887765 788889999999988766 99999999999999999866654433 234456
Q ss_pred EEEEeCC
Q 002493 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
++-+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666554
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=3e-09 Score=107.85 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=127.5
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec------CC-----ccEEEEE-EccCCCCEEEEEECCCcEEEEECCCC
Q 002493 108 HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG------HS-----HYVMQVT-FNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
+.||+.|+.. ..|.|.+||..+. .+...-.+ .. .+..-+. |++.++++++..|. |...+.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3456665543 3477889988765 22222111 00 0011111 44456888888875 66667665444
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC-eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002493 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
-.++ -++.+.|.-..+..++. -++.|..|| .+-++|.++++ +..+...-+.|.++..+|+|++++++.....+.
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3322 25677788888877776 488888888 89999998665 455666778999999999999999998888899
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002493 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~ 296 (915)
+.|+.++.....-+...+-|+.+.|+|+++++|-+.-+|.+.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 999999987655555567799999999999999988877654
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=2e-10 Score=127.72 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=156.8
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
+.|....+.-+...++.++.+..+.|||...+.....+..... +..-+.++++.-++++|+.-+.|.+|.....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455556677889988899999999888766655543322 233345567778899999999999999885444
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
...+.+|.+.|.++.|+.+|.++++.|+|.++++|++++........-+|+..|..++|.| . .+++++.|.+.++|+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWG 244 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEe
Confidence 4568899999999999999999999999999999999998666667778999999999998 3 999999999999997
Q ss_pred CCCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002493 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
.+.. ....+..|. +.+..++..++.. .+++++.|+.+++|++..
T Consensus 245 ~~~~-~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNGT-QLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cccc-eehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhhhc
Confidence 6543 333555554 4678888776655 799999999999999864
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=2e-11 Score=117.93 Aligned_cols=152 Identities=18% Similarity=0.298 Sum_probs=111.2
Q ss_pred EEEEEcCCCCeEEEEEc----------CCcEEEEECC-CCceeEEEEe-cCCCEEEEEEeCCCCEEEEE--eCCCeEEEE
Q 002493 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQ-SQTMAKSFEV-TELPVRSAKFVARKQWVVAG--ADDMFIRVY 84 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g--~~dg~i~vw 84 (915)
..+.|+|+|.+|++-.. -|...||-++ .+..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56889999998876443 2345555552 2334445544 35679999999999997655 356799999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
|++ ++.+..+. ...+..+.|||+|++|++++. .|.|.+||.++. ....... | ..+..++|+| ++++|+++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsP-dGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSP-DGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcC-CCCEEEEE
Confidence 996 56666664 567889999999999999874 367999999976 4443332 3 3478999999 89999988
Q ss_pred EC------CCcEEEEECCCCCCc
Q 002493 162 SL------DRTIKIWNLGSPDPN 178 (915)
Q Consensus 162 ~~------dg~i~i~d~~~~~~~ 178 (915)
+. |..++||+.. |+.+
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred EeccceeccccEEEEEec-CeEe
Confidence 75 6778999984 4433
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-10 Score=119.58 Aligned_cols=306 Identities=16% Similarity=0.225 Sum_probs=190.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEEC
Q 002493 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDW 128 (915)
Q Consensus 60 v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~ 128 (915)
-+-+.|||.|.+|++--..| |.+|--.+...++.|. |+ .|..+.|||..+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987766 8899766656666664 55 4889999999999998653 257999999
Q ss_pred CCCeeEEEEeec--CCccE-EEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002493 129 EKGWMCTQIFEG--HSHYV-MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 129 ~~~~~~~~~~~~--~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+| .....+.. ....+ .-+.||. |+.+++.-.. .+|.||+..+..+.-.-.-.-.+|....|+|.++ +|+-=
T Consensus 290 ~tG-~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAYw 364 (698)
T KOG2314|consen 290 ATG-LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAYW 364 (698)
T ss_pred ccc-chhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc--eEEEE
Confidence 999 55555443 22222 3457888 7888887766 5789998765433322223446788889999876 45432
Q ss_pred eC-----CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE----------cCCcEEEEeCCCcceeeeeecC
Q 002493 206 SD-----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 206 ~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.. -..+.+..+.+++.+++..-+.-.=..+-|-.+|.+|+.-- .-..+-|+.++.....-..-.-
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 21 24577788888887777665544334566777888887532 1123556665544322222223
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecC
Q 002493 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
...|...+|-|.|..+++-+.+-. ...+..+.+.. .+....+ ++.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~------------------------k~tvsfY~~e~--------~~~~~~l-Vk~~d 491 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTV------------------------KNTVSFYAVET--------NIKKPSL-VKELD 491 (698)
T ss_pred chheeeeeeccCCCeEEEEEcccc------------------------ccceeEEEeec--------CCCchhh-hhhhc
Confidence 477899999999998887443221 01111222110 1111111 11111
Q ss_pred CcccCCceEEECCCCCEEEEEc----CCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec
Q 002493 351 TCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES 408 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~ 408 (915)
. ...+.+.|+|.|+++++++ .|.+.+|+......+ ..-..+.+-|.|.|+|+++.+
T Consensus 492 k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 1 2346899999999999875 577788876532211 112345666777777766654
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.3e-11 Score=116.47 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=111.7
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCCCeeEEEEe-ecCCccEEEEEEccCCCCEEEEE--ECCCcEEE
Q 002493 103 RCVAVHPTLPYVLSSSD----------DMLIKLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASA--SLDRTIKI 169 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~i 169 (915)
..+.|+|+|.+|++-.. -|...+|.++........+ ....++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45889999988775433 1345555553222223333 23445799999999 77776554 45679999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEE
Q 002493 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 246 (915)
||++ ++.+..+ +...++.+.|+|.|+ ++++++. .|.|.+||.++.+.+.... | ..++.++|+|+|+++++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 9996 5555555 356778999999998 7887764 4679999999888887765 3 34789999999999998
Q ss_pred EEc------CCcEEEEeCCCcceeeee
Q 002493 247 GSE------DGTVRIWHATTYRLENTL 267 (915)
Q Consensus 247 ~~~------dg~v~iwd~~~~~~~~~~ 267 (915)
++. |+.++||+.. |+++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 874 6789999975 6665543
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=6.8e-11 Score=114.82 Aligned_cols=239 Identities=16% Similarity=0.227 Sum_probs=168.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
..-|.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3468899999999999999999999999644322 233444443 2578899998765 57777
Q ss_pred EcCCeEEEEECCCCee----------------------------------EEEE-eecCCccEEEEEEccCCCCEEEEEE
Q 002493 118 SDDMLIKLWDWEKGWM----------------------------------CTQI-FEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~~----------------------------------~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
+.|.+|++|.+..... +.++ -..|.-.|.++.++. |...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 8899999998753211 1111 124677789999997 77777775
Q ss_pred CCCcEEEEECCCCCCceEE---ecC-----CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE------EEE----
Q 002493 163 LDRTIKIWNLGSPDPNFTL---DAH-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------VQT---- 224 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~---- 224 (915)
.|-.|.+|++.-....+.+ +++ ..-|++..|+|.... +++-.++.|+|++-|++.... +..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4788999998654433333 222 234778889987654 788888999999999984321 111
Q ss_pred ------ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC-CcceeeeeecCC------------cc---EEEEEEecC
Q 002493 225 ------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYGL------------ER---VWAIGYMKS 282 (915)
Q Consensus 225 ------~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~------------~~---v~~i~~~~~ 282 (915)
+..--..|+.+.|+++|+++++-..- +|++||+. ..+++.+++.|. .. -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11122458899999999999987644 89999984 445666655442 11 245889999
Q ss_pred CCEEEEEecCCeEEEec
Q 002493 283 SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~ 299 (915)
+..+.+|+-...+++..
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999988854
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.3e-10 Score=129.62 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=154.4
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|.... ..+.+..+...+.+.+|+|+|++|+.++.. ..|++||+.+++... +..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 35888887544 345555577789999999999999987653 489999999876543 3345566778999999998
Q ss_pred EEEE-EcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002493 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.++ .|++||+.++ .... +..+........|+| +++.|+..+. ++ .|.++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~-~~~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK-QLTR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC-CEEE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 7654 4343 5889998876 3333 333444456778999 7777766554 33 578888876653 344445566
Q ss_pred eeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEEEEeCCCc
Q 002493 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
+....|+|+++ +++.++.++ .|.+||+.++... .+... .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 324 ~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 324 NASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred ccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 67889999887 677766665 7899998876543 23222 2334568999999888877654 3555553 35
Q ss_pred ceeeeeecCCccEEEEEE
Q 002493 262 RLENTLNYGLERVWAIGY 279 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~ 279 (915)
.....+..+.+.+..++|
T Consensus 399 ~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceeeECCCCCCCcCCCCC
Confidence 444444443344444444
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.8e-10 Score=128.43 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=153.3
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002493 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|...+. .+.+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876554 45555677789999999999999877643 479999999876543 33334455678999999988
Q ss_pred EE-EEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002493 115 LS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+| .|++||+.++ .... +..+........|+| +++.++..+. +| .|.++++.+++.. .+.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~-~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR-QLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCC-CeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 74 44444 6888899887 3333 344555566788999 7776665553 33 5777788776643 232222333
Q ss_pred eEEEEEeCCCcCEEEEEeC-CC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCcc
Q 002493 189 NCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~ 262 (915)
....|+|+++ +++..+. ++ .|.+||+.+++... +.. ........|+|+|+.++..+.+ ..|.++++. +.
T Consensus 334 ~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 334 ARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred cceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4578999988 4555443 33 58889998876533 322 1222356899999988876644 246777764 44
Q ss_pred eeeeeecCCccEEEEEEecC
Q 002493 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44445444456677777764
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.6e-10 Score=126.40 Aligned_cols=234 Identities=15% Similarity=0.077 Sum_probs=150.6
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002493 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|..... .+.+..+..++.+..|+|||++|+..+.+ ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 67777865443 34555677789999999999999876542 3688999988765332 2223344578999999988
Q ss_pred EE-EEcCCe--EEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002493 115 LS-SSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+|. |+++|+.++ .... +..+........|+| +++.++..+. ++ .|.++|+.+++.. .+.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCC
Confidence 75 455664 888888876 3333 334445567889999 7776665543 34 4666787766543 332222333
Q ss_pred eEEEEEeCCCcCEEEEE-eCCC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-C--cEEEEeCCCcc
Q 002493 189 NCVDYFTGGDKPYLITG-SDDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-G--TVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~v~iwd~~~~~ 262 (915)
...+|+|+++ +++.. ..++ .|.++|+.+++... +... .......|+|+|+.|+..+.+ | .+.+++. +|+
T Consensus 353 ~~~~~SpDG~--~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGR--SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCC--EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 4578999987 45444 3344 45667887776432 3222 122345899999988765543 3 3677775 566
Q ss_pred eeeeeecCCccEEEEEEecC
Q 002493 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66666655566777888873
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.35 E-value=7.2e-08 Score=109.64 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=130.8
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC----C
Q 002493 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG----S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~ 174 (915)
.+.|.++.|..+...++.+...|.|.+-|..+. .......-...|.+++|+| |...++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 368999999999999999999999999988875 3444455567899999999 89999999988887664420 0
Q ss_pred -------------------CCCceEEecCC---------------------CCeeEEEEEeCCCcCEEEEE-----eCCC
Q 002493 175 -------------------PDPNFTLDAHQ---------------------KGVNCVDYFTGGDKPYLITG-----SDDH 209 (915)
Q Consensus 175 -------------------~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~-----~~dg 209 (915)
|+....+.+.. ..-++++|-.+|. ++++. ...+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCce
Confidence 01111122111 1123577766665 77773 2337
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE---cCCcEEEEeCCCcceeeee----ecCCccEEEEEEecC
Q 002493 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS---EDGTVRIWHATTYRLENTL----NYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~ 282 (915)
.|++||.. |..-.+-....+-=.+++|-|.|..+++-. .|+.|.+|. ++|-....+ ......+..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 99999976 443222222233345799999999888754 456799998 445433322 222334899999999
Q ss_pred CCEEEE---EecCCeEEEec
Q 002493 283 SRRIVI---GYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~---g~~dg~v~i~~ 299 (915)
+..|++ ......|++|.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCceeeeecccccceEEEEE
Confidence 999998 44555588874
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.7e-10 Score=127.12 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=147.5
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i~ 82 (915)
+.+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677889999999999999877643 369999998886543 33344556678999999988754 4444 688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
+||+.+++.. .+..+........|+|+|+.|+..+. + ..|+++++.++. ...... .........|+| +++.++
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~-~~~~~~~~~~Sp-dg~~i~ 346 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTF-VGNYNARPRLSA-DGKTLV 346 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeec-CCCCccceEECC-CCCEEE
Confidence 8899887654 44445556677899999998877664 2 368888887763 332221 123344678999 777777
Q ss_pred EEECC-C--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe-CC--CeEEEEECCCCcEEEEecCCccCeE
Q 002493 160 SASLD-R--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DD--HTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.+ + .|.++|+.+++.. .+.. ........|+|+|. .++..+ .+ ..+.+++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGT--MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 76643 3 4888999877543 3322 22233568999987 454443 33 357777775 444445554556677
Q ss_pred EEEEeCC
Q 002493 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7778773
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.6e-08 Score=108.54 Aligned_cols=266 Identities=11% Similarity=0.176 Sum_probs=175.2
Q ss_pred EEEEEcC----CcEEEEEC--CCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC--c--eeEE
Q 002493 30 ILASLYS----GTVCIWNY--QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGAD----DMFIRVYNYNTM--D--KVKV 94 (915)
Q Consensus 30 la~~~~d----g~v~iwd~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~--~--~~~~ 94 (915)
+++|++. +.|.+|++ .++++...-. ........++++|++++|.+... +|.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5667765 68999887 5554432221 24455678999999999999876 579999988764 3 2333
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeeEEEE---ee----------cCCccEEEEEEccCCCCEEEE
Q 002493 95 FEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQI---FE----------GHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~---~~----------~~~~~v~~~~~~p~~~~~l~~ 160 (915)
..........++++|++++|+++. .+|.|.++++.....+... .. .......++.++| +++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEE
Confidence 333455677899999999999887 4899999999863233222 11 1234467899999 7777766
Q ss_pred EEC-CCcEEEEECCCCCC-c---eEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC--CCc--EEEEecCC--
Q 002493 161 ASL-DRTIKIWNLGSPDP-N---FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKS--CVQTLEGH-- 228 (915)
Q Consensus 161 ~~~-dg~i~i~d~~~~~~-~---~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-- 228 (915)
... ...|.+|++..... + ..+ .........+.|+|+++. +.++.-.++.|.++++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 544 45799999976652 2 112 234566789999998874 44555668899999988 443 23333211
Q ss_pred ----ccCeEEEEEeCCCCEEEEEE-cCCcEEEEeCC--Ccc--eeeeeecCCccEEEEEEecCCCEEEEEec-CCeEEE
Q 002493 229 ----THNVSAVCFHPELPIIITGS-EDGTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 229 ----~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~g~~-dg~v~i 297 (915)
......|.++|||++|.++. ..+.|.+|++. ++. .+..+.......+.++++|+|++|+++.. ++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12578899999999888765 45679999983 343 33444444455899999999999998774 456655
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8.3e-10 Score=121.30 Aligned_cols=240 Identities=12% Similarity=0.083 Sum_probs=152.2
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE---EEeCC--CeEEEEECCCCceeEEEecCCCCEEEEEEcCCC
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV---AGADD--MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~g~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
+.|.+.|...+.. +.+......+.+-+|+|||+.++ +...+ ..|.+.++.+++..... ...+......|||||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4678888665543 44555566677889999997532 33333 46888899877654333 234455678999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC--eeEEEEeecCCccEEEEEEccCCCCEEEEEE-CCCcEEEE--ECCC-CCCceE
Q 002493 112 PYVLSSSD-DM----LIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIW--NLGS-PDPNFT 180 (915)
Q Consensus 112 ~~l~~~~~-dg----~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~ 180 (915)
+.|+..+. +| .+..|++..+ ....+....+.......+|+| |++.|+..+ .+|...+| ++.. +.....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 98887653 22 3444676642 133344433333456789999 777666655 46654455 4432 233444
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc---CCcEE
Q 002493 181 LDAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVR 254 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~v~ 254 (915)
+......+....|+|+|+ .|+..+.+ ..|.+||+.+++.... ......+....|+|||+.|+..+. .+.|.
T Consensus 322 lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 544555677899999998 45554432 4699999988876443 323345678999999998875443 34688
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCC
Q 002493 255 IWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
++|+.+++..... ...+.+...+|+|..
T Consensus 399 ~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEee-cCCCcccCceecCCC
Confidence 8898877654433 334556778888754
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.8e-10 Score=127.04 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=146.9
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i~ 82 (915)
+.+..+...+.+.+|||||++|+.+... ..|++||+.+++... +..+...+.+++|+|+|+.|+.. +.++ .|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455677779999999999999987653 479999998886543 33455667789999999988754 4343 688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
+|++.+++. ..+..+........|+|+|++|+.++.. + .|+++|+.++. .. .+..+........|+| +++.++
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~-~l~~~~~~~~~~~~sp-dg~~i~ 337 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VR-RLTFRGGYNASPSWSP-DGDLIA 337 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCCccCeEECC-CCCEEE
Confidence 999887654 3344455555678999999988876653 2 68888888763 22 3333455677889999 788888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeE
Q 002493 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
.++.++ .|.+||+.++.. ..+.. ........|+|++. +|+..+.++ .+.+.+.. +.....+..+.+.+.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGR--MILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR 412 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCC--EEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence 877765 788999877543 33322 22335568999887 465555443 35555543 555555544444444
Q ss_pred EEEE
Q 002493 234 AVCF 237 (915)
Q Consensus 234 ~i~~ 237 (915)
.++|
T Consensus 413 ~~~w 416 (417)
T TIGR02800 413 EPAW 416 (417)
T ss_pred CCCC
Confidence 4443
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.1e-08 Score=109.93 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=170.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEc----CCcEEEEECCCC--ce--eEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEE
Q 002493 15 SERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQ--TM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYN 85 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~vwd 85 (915)
......++++|++++|.+... +|.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999998876 468999987764 33 3333334455678999999999999875 89999999
Q ss_pred CCC-CceeEE---Ee----------cCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCee-EE---EEeecCCccEE
Q 002493 86 YNT-MDKVKV---FE----------AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM-CT---QIFEGHSHYVM 146 (915)
Q Consensus 86 ~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~---~~~~~~~~~v~ 146 (915)
+.. +..... +. .......++.|+|+++++++... ...|.+|+++.... +. ...........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 333222 21 12345789999999998887643 35799999976531 21 12223445578
Q ss_pred EEEEccCCCCEE-EEEECCCcEEEEECC--CCC--CceEEecC------CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 147 QVTFNPKDTNTF-ASASLDRTIKIWNLG--SPD--PNFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 147 ~~~~~p~~~~~l-~~~~~dg~i~i~d~~--~~~--~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.+.|+| +++++ ++.-.+++|.++++. ++. ....+... ......+.++|+++. ++++....+.|.+|+
T Consensus 196 h~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 196 HLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-LYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-EEEEECTTTEEEEEE
T ss_pred EEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-EEEEeccCCEEEEEE
Confidence 999999 66655 445567889999987 332 11222211 124678999999873 344455678999999
Q ss_pred CC--CCc--EEEEecCCccCeEEEEEeCCCCEEEEEE-cCCcEEEEeC--CCcceeeeee-cCCccEEEEEE
Q 002493 216 YQ--TKS--CVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHA--TTYRLENTLN-YGLERVWAIGY 279 (915)
Q Consensus 216 ~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~-~~~~~v~~i~~ 279 (915)
+. +++ .+..+.........+.++|+|++|+++. .++.|.+|++ .+|.+...-. .......|+.|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 83 343 3344443344578999999999999887 4568888865 5666554432 23344556554
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=5.3e-10 Score=117.19 Aligned_cols=190 Identities=16% Similarity=0.254 Sum_probs=157.2
Q ss_pred cCCCCeEEEEEcCCcEEEEECCCCceeEEEEe---cCCCEEEEEEe------C--------------CCCEEEEEeCCCe
Q 002493 24 HPSEPWILASLYSGTVCIWNYQSQTMAKSFEV---TELPVRSAKFV------A--------------RKQWVVAGADDMF 80 (915)
Q Consensus 24 sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~g~~dg~ 80 (915)
.|...++|....||.++|||...++....|.. ..+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999988877764 24566666663 2 2346788888999
Q ss_pred EEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEE
Q 002493 81 IRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
|.+|+...|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.... .....+...+..+.+++.+| |+..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEE
Confidence 9999999999887775 79999999999999999999999999999999987 77788888888899999999 78899
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC-----CCcCEEEEEeCCCeEEEEECCC
Q 002493 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----GDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++++ ++|++||+.+.+.+..+.+|.++|+++.|... |.. +|.+...+..+.+|-...
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY-VLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce-eeeccccccceeEEEEEc
Confidence 9887 78999999999999999999999999999876 331 333444556677776543
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.7e-10 Score=122.02 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=143.7
Q ss_pred hhcccCCCCEEEEEEcCCCCeEE---EEEcC--CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----C
Q 002493 9 RKLAQRSERVKSVDLHPSEPWIL---ASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----D 78 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-----d 78 (915)
+.++.....+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+.|+..+. +
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 34555566778889999998533 33333 358888988775443 3334555667899999999887653 2
Q ss_pred CeEEEEECCCC---ceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCe--EEEEECCCCeeEEEEeecCCccEEEEEEcc
Q 002493 79 MFIRVYNYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 79 g~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 152 (915)
..+.+|++.++ +.......+.......+|+|||+.|+..+ .+|. |.++++.........+..+...+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 23444776653 33333333334456789999999888765 3564 444455422122333334445677889999
Q ss_pred CCCCEEEEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EeC--CCeEEEEECCCCcEEEEec
Q 002493 153 KDTNTFASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD--DHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 153 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~ 226 (915)
+++.|+..+.+ ..|.+||+.+++.. .+......+....|+|+++ .|+. +.. ...|.++|+.+++......
T Consensus 337 -DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~--~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 337 -DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSL--HLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 78877766543 36899999887654 3333344567899999987 4543 332 3578889988776544333
Q ss_pred CCccCeEEEEEeCCC
Q 002493 227 GHTHNVSAVCFHPEL 241 (915)
Q Consensus 227 ~~~~~i~~i~~~~~~ 241 (915)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556778888753
No 269
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.3e-11 Score=122.17 Aligned_cols=195 Identities=11% Similarity=0.166 Sum_probs=153.7
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe---
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--- 96 (915)
.|+++.-..-|.+++....|+-+|++.|..+..+....+.++++..++-..+|++|+.+|.|..||..+...+..+.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 45555444446666667789999999999999999888999999999999999999999999999998877666654
Q ss_pred ---cCCC-----CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 97 ---AHTD-----YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 97 ---~~~~-----~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.......-.+...+|..+.|.+.++.--+.......++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 2333 39999999999999999999999999999885555444455678999999884433333334457899
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002493 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
|||-.++++...+.. ...++.+|+.|++. +++++-.++.+..|=+.
T Consensus 298 iWd~~~Gk~~asiEp-t~~lND~C~~p~sG--m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP-TSDLNDFCFVPGSG--MFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccCCceeeccc-cCCcCceeeecCCc--eEEEecCCCcceeEEcc
Confidence 999999998877764 44589999999876 78888877766655443
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4.9e-10 Score=124.20 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=143.3
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEc-C--CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEEE
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLY-S--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIRV 83 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg--~i~v 83 (915)
.+..+...+.+..|||||++|+..+. + ..|.+||+.+++... +....+.....+|+|||+.|+.. +.+| .|.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34445667889999999999987654 2 358899988876533 33233444578999999988754 5566 4888
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
+|+.+++. ..+..+........|+|+|+.|+..+. + ..|+++|+.++......+.+ .......|+| +++.++.
T Consensus 291 ~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~Sp-DG~~l~~ 366 (448)
T PRK04792 291 VDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITP-DGRSMIM 366 (448)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECC-CCCEEEE
Confidence 89887654 344445556678899999998876654 3 35777788776322222222 2334578999 7777766
Q ss_pred EEC-CC--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC--eEEEEECCCCcEEEEecCCccCeEEE
Q 002493 161 ASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 161 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i 235 (915)
.+. ++ .|.++|+.+++.. .+... .......|+|++.. ++++...++ .+.+++. +|.....+..+.+.+...
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~-I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM-VIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE-EEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 554 34 4566787776543 23222 12234579999874 333333444 3777786 466666666666667788
Q ss_pred EEeCC
Q 002493 236 CFHPE 240 (915)
Q Consensus 236 ~~~~~ 240 (915)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 88873
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=5.9e-10 Score=106.33 Aligned_cols=258 Identities=13% Similarity=0.136 Sum_probs=175.5
Q ss_pred CeEEEEEc------------CCcEEEEECCCCceeE--EE-EecCCCEEEEEEeC---CCC-EEEEEeCCCeEEEEECCC
Q 002493 28 PWILASLY------------SGTVCIWNYQSQTMAK--SF-EVTELPVRSAKFVA---RKQ-WVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 28 ~~la~~~~------------dg~v~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~g~~dg~i~vwd~~~ 88 (915)
+.||+|++ .|++.+|++...+... ++ ....+.+..+.|.. +|. .++-+..+|.|.+|....
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 36777753 3679999988765543 11 22345677788864 455 456667789999998765
Q ss_pred CceeEEEecCCC------CEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 89 MDKVKVFEAHTD------YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 89 ~~~~~~~~~~~~------~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
......+.+-+. ...++.|++.+..++++..+|.+.+-+.... -+..+..+.|.-..+...|+..+++++.+|
T Consensus 105 ~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 105 DESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG 184 (339)
T ss_pred ceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec
Confidence 444444432211 2457889999999999999999996665544 122347889999999999998888999999
Q ss_pred ECCCcEEEEECCCCC-CceE-EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeEEEEEe
Q 002493 162 SLDRTIKIWNLGSPD-PNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~-~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~ 238 (915)
+.|+.+..||++.++ .+.. .+.|..+|.++.-+|. ...++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~ 262 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHH 262 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEec
Confidence 999999999999433 3332 3467888999987765 445999999999999999995 66665544 45789999999
Q ss_pred CCCC--EEEEEEcCCcEEEEeCCCccee-----eeeecCCccEEEEEEecCCCEEEE
Q 002493 239 PELP--IIITGSEDGTVRIWHATTYRLE-----NTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 239 ~~~~--~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
|.-. +++++-.+ -.+|.+.+..... ...+.|.+-.+.-.|......|++
T Consensus 263 p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 263 PEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred chhhhHHHHHHHhc-CceEEEecccccchheeeeccccccceeeccccccccceeee
Confidence 9543 34444444 3666666544322 233344333444445333345666
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.7e-10 Score=128.36 Aligned_cols=268 Identities=18% Similarity=0.228 Sum_probs=188.1
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeC------CCCEEEEEeCCCeEEEEECCC
Q 002493 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVA------RKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~------~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+++.+..+-. ++|++|. .-.|.+||+.++..+..+.. +-.++. .+ .+.+++++..-+.+.+=....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh
Confidence 3444444443 6777765 55799999998876654432 111111 11 233455554433333222111
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEE---EEEccCCCCEEEEEECCC
Q 002493 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ---VTFNPKDTNTFASASLDR 165 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---~~~~p~~~~~l~~~~~dg 165 (915)
+. +..-.+.|....+......++.++.+..+.+||...++....+.........+ +-+++ +.-++++|+.-+
T Consensus 81 -~~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 -QI---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFG 155 (967)
T ss_pred -hh---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccc
Confidence 11 11223344445556677789999999999999998875444443222222222 22344 567889999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE-EecCCccCeEEEEEeCCCCEE
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-TLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l 244 (915)
.|.+|+....+....+.+|.+.+..+.|+.+|. ++++.++|.++++|++.+.+... ..-+|...|+.++|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999975554556889999999999999888 89999999999999999887655 55679999999999998 89
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002493 245 ITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~g~~dg~v~i~~~ 300 (915)
++++.|.+.++|+.. +..+..+..|. ..+|.++..++...+++++.||.+++|..
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 999999999999754 55555666664 56999999999999999999999999853
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=3.9e-08 Score=102.26 Aligned_cols=261 Identities=11% Similarity=0.069 Sum_probs=167.8
Q ss_pred CCCeEEEEEcC-----CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCc
Q 002493 26 SEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMD 90 (915)
Q Consensus 26 ~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~ 90 (915)
++.++.+.... |+|.+.|..+++.+..+.....+- .+ ++|||+.|+++.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 44555554443 899999999999999888655543 34 9999999887755 7899999999999
Q ss_pred eeEEEecCCC-------CEEEEEEcCCCCEEEEEE-c-CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 91 KVKVFEAHTD-------YIRCVAVHPTLPYVLSSS-D-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 91 ~~~~~~~~~~-------~i~~l~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
.+..+....+ ....++++|+|++|++.. . +..|.+.|+.+++....+-.+ ....-...++ + .+.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~e-~--~~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTAN-D--TFFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEecC-C--ccEEE
Confidence 9988874222 334789999999999776 3 689999999998444433322 1112222222 2 22233
Q ss_pred ECCCcEEEEECCCCCCceE-----EecCCCCe-eEEEEEe-CCCcCEEEEEeCCCeEEEEECCCC-----cEEEEecC--
Q 002493 162 SLDRTIKIWNLGSPDPNFT-----LDAHQKGV-NCVDYFT-GGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEG-- 227 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~-----~~~~~~~v-~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-- 227 (915)
+.||......+........ +.....++ ..-.|++ ++. ++.+... |.|.+.|+... .....+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 4556555544432111111 11100000 0013455 444 5655555 99999996432 22222211
Q ss_pred -----CccCeEEEEEeCCCCEEEEEEc----------CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEEe-
Q 002493 228 -----HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY- 290 (915)
Q Consensus 228 -----~~~~i~~i~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~g~- 290 (915)
..+.+.-++++|+++.+++... .+.|.++|..+++.+..+... ..++.++++||++ .|++..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCC
Confidence 1223445999999998887431 247999999999999988765 6899999999999 777655
Q ss_pred cCCeEEE
Q 002493 291 DEGTIMV 297 (915)
Q Consensus 291 ~dg~v~i 297 (915)
.++.|.+
T Consensus 320 ~s~~VsV 326 (352)
T TIGR02658 320 GDKTLYI 326 (352)
T ss_pred CCCcEEE
Confidence 4566665
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=2.1e-08 Score=104.22 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=158.2
Q ss_pred EcCCCCeEEEEEc----------CCcEEEEECCCCceeEEEEecCC-------CEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 002493 23 LHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGA-D-DMFIRV 83 (915)
Q Consensus 23 ~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~g~-~-dg~i~v 83 (915)
+||||+.|+++.. ++.|.+||..+.+.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998888765 68899999999999988875332 234789999999999876 3 789999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEE---EeecCCccEE-EEEEccCCCCEE
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ---IFEGHSHYVM-QVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~v~-~~~~~p~~~~~l 158 (915)
.|+.+++.+..+.- .+...-...++++.+ +-+.||......+....+ ... .+.....++. .-.|.+.++..+
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 99999999988875 223333334333322 223345444433332111 111 1111000000 003455466677
Q ss_pred EEEECCCcEEEEECCCCCC-----ceEEe-------cCCCCeeEEEEEeCCCcCEEEEE--------eCCCeEEEEECCC
Q 002493 159 ASASLDRTIKIWNLGSPDP-----NFTLD-------AHQKGVNCVDYFTGGDKPYLITG--------SDDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-----~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~--------~~dg~i~iwd~~~ 218 (915)
++... |+|.+.|+.+... ...+. ...+.+.-++++++++.-|++.- ...+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 66665 9999999754322 22211 12334455899998885222221 1225899999999
Q ss_pred CcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCcEEEEeCCCcceeeee
Q 002493 219 KSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 219 ~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (915)
++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988874 45789999999999 777665 5788999999999988887
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=113.81 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=150.6
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEec---CCCCEEEEEE--------------------cCCCCEEEEEEcCCeE
Q 002493 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAV--------------------HPTLPYVLSSSDDMLI 123 (915)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~--------------------s~~~~~l~~~~~dg~i 123 (915)
|-..++|..+.||.+++|+..+++....|.. -++..++..| +.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776642 2334445555 2233468888899999
Q ss_pred EEEECCCCeeEEEEe--ecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCE
Q 002493 124 KLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
.+|+...+ .+...+ ..|.+.|.++.++. +-..|.+++.|+.+..|+......+..+......+.+++++|++. .
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--~ 158 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--I 158 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--E
Confidence 99999988 444443 47899999999987 778999999999999999999998889988899999999999977 6
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC-----CCEEEEE-EcCCcEEEEeCC
Q 002493 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LPIIITG-SEDGTVRIWHAT 259 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~-~~dg~v~iwd~~ 259 (915)
+++++ +.|++||+.+++.+.+|.+|.++|.++.|..+ |.+++++ ..+..+.+|-+.
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 77765 68999999999999999999999999999887 6666654 334456666543
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=2.5e-08 Score=109.13 Aligned_cols=465 Identities=14% Similarity=0.141 Sum_probs=243.8
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-eEEEEEeCCCCEEEEEEcCCc-----EEEEeCCCc-----
Q 002493 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDGT-----VRIWHATTY----- 261 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~-----v~iwd~~~~----- 261 (915)
|++++. .++.|+.+|.|.+++-+ -+.++.++.+... |..+....+..+|++.++|+. |+||++..-
T Consensus 31 ~~s~~~--~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG--SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc--eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 444444 69999999999998843 5555777777776 444444444468888777654 999997532
Q ss_pred -cee---eee--ec--CCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccc
Q 002493 262 -RLE---NTL--NY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (915)
Q Consensus 262 -~~~---~~~--~~--~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~ 333 (915)
.++ ..+ .. ...++.+++.+.+-+.+|+|..+|.|...- |.++........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~------------GDi~RDrgsr~~---------- 165 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK------------GDILRDRGSRQD---------- 165 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc------------Ccchhcccccee----------
Confidence 222 111 11 246788999999999999999999998852 222222111110
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCE-EEEEcCCcEEEEEeecccccCccceeEEEEecCCcEEEEecCCeE
Q 002493 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF-VVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKI 412 (915)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~-lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~v 412 (915)
.......+|+.+++..+++. +.+++..++..|.+....+ ..
T Consensus 166 --------------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p------------------------~~ 207 (933)
T KOG2114|consen 166 --------------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP------------------------SL 207 (933)
T ss_pred --------------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc------------------------ce
Confidence 01223346788888888876 5566677777775542110 01
Q ss_pred EEeccCccceeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE-ccccEEEEcCCCCEEEEEeCCeEEEEEe
Q 002493 413 KIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKY 491 (915)
Q Consensus 413 ~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~ 491 (915)
++.| ..+..-..+.|++. ..-++++....+.|||.+...+...+. +.=.-+-|...|-.|++..+.+.-.
T Consensus 208 ~~ld--~~G~~lnCss~~~~----t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~--- 278 (933)
T KOG2114|consen 208 KVLD--NNGISLNCSSFSDG----TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN--- 278 (933)
T ss_pred eeec--cCCccceeeecCCC----CccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC---
Confidence 1100 00000011123332 223555556678888766444444443 3333333433333333332221110
Q ss_pred cHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeE-EEEECCEEeEEEecccceEEEEEEee
Q 002493 492 NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRL-NYCVGGEVTTMFHLDRPMYLLGYLAS 570 (915)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~d~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (915)
.+ ..+.. ..++. -+|.-. ++. -|.. -++..... +...
T Consensus 279 -----------------~s--~s~ss----~~~i~--------~~~d~~-n~~v~ys~--------vl~~l~d~--l~~w 316 (933)
T KOG2114|consen 279 -----------------TS--LSNSS----SNRIF--------KAYDLR-NRYVLYSS--------VLEDLSDN--LIEW 316 (933)
T ss_pred -----------------cc--cCccc----hhhee--------ehhhhc-CcccchHH--------hHHHHHHH--HHhc
Confidence 00 00000 00000 111111 111 0110 00000000 0011
Q ss_pred CCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcc--h----HHHHHHHHHhCCChhhhhhcccCccc
Q 002493 571 QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKE--H----HNSVARFLESRGMIEEAIEVATDPDY 644 (915)
Q Consensus 571 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~--~----~~~~~~~~~~~~~~~~al~~~~~~~~ 644 (915)
+..++++..+|.+....--...-.......+.-+..|..+.+.--.+ . |.....||-++|..+.|..
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~------- 389 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATD------- 389 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-------
Confidence 23455556666554433211111112222233444454443322111 1 1234556777777777762
Q ss_pred eeeeec-ccCCHHHHHHHHHHcCChhHHHHHHHHHHHc--------CChhhHHHHHHHcCCcchhHHHHHhcCC---HHH
Q 002493 645 RFELAI-QLGRLEVAQEIATEVQSESKWKQLGELAMST--------GKLEMAEGCMKQAMDLSGLLLLYSSLGD---AEG 712 (915)
Q Consensus 645 ~f~~~l-~l~~~~~A~~~a~~~~~~~~w~~la~~al~~--------~~~~~A~~~y~~~~d~~~l~~l~~~~~~---~~~ 712 (915)
.++ .+|.++-++ ++++--+++.-++|..+.+.- -+..+-..||.+.+|.++|...-....+ .-.
T Consensus 390 ---qYI~tI~~le~s~-Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd 465 (933)
T KOG2114|consen 390 ---QYIETIGFLEPSE-VIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD 465 (933)
T ss_pred ---HHHHHcccCChHH-HHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee
Confidence 223 234444444 333334456667777765433 3455567899999999987664443330 112
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH-HCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002493 713 ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV-ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 713 ~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~-~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~ 782 (915)
++..-++..+.+-...|.+++...++-+...++++ ..+.+.+|+.+-..+.++.+-+.+..|.+.|....
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~ 536 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHD 536 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhC
Confidence 56666777777878888888888888666666555 56668999988888888888888888888886443
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=3.1e-11 Score=140.03 Aligned_cols=200 Identities=16% Similarity=0.276 Sum_probs=162.7
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
++.|-..|.+|.=||..++-++|+.||.|++|....++.+..+.. .+..|+.+.|+.+|+.+.++..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 344667899999999999999999999999999999988877763 34789999999999999999999999999987 4
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+.....+.|......+.|-. ..+++++ .++.+.+||.--......+-..|.+.++++++-| ..++|++|+.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCc
Confidence 66667788998888888875 4566653 5789999996533222223378999999999999 8899999999999
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002493 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
|++||++..+....++. +. .+.++++|+..|.++||++.....+.++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh---hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999988776665543 22 23389999999999999998776666554
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-09 Score=104.61 Aligned_cols=240 Identities=14% Similarity=0.098 Sum_probs=163.6
Q ss_pred CCEEEEEEcC---CCC-eEEEEEcCCcEEEEECCCCceeEEEEecC---C---CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 16 ERVKSVDLHP---SEP-WILASLYSGTVCIWNYQSQTMAKSFEVTE---L---PVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~v~~~~~sp---~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~---~---~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
..+..|.|+- +|. .++-+-..|.|.+|..........+.+-+ . ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3456666653 344 45566668999999765443333333321 1 245789999999999999999999666
Q ss_pred CCCCcee--EEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCee-EEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 86 YNTMDKV--KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 86 ~~~~~~~--~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
...+... +..+.|.-.++...|+... +.+.+|++|+.+..||++.... .-+....|...|.++.-+|..+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 5554443 3778999999999998755 4778999999999999993322 3333556888999999999889999999
Q ss_pred ECCCcEEEEECCC-CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-----EEEEecCCccCeEEE
Q 002493 162 SLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-----CVQTLEGHTHNVSAV 235 (915)
Q Consensus 162 ~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~i 235 (915)
+.|-.|++||.++ +++++.-. ..++|..+.++|.-...++++ +.-.-.+|.+.+.+. .....+.|.+-...-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~-CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAA-CMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHH-HHhcCceEEEecccccchheeeeccccccceeecc
Confidence 9999999999985 55655433 458899999999765433443 334445666665432 233444565555555
Q ss_pred EEeCCCCEEEEEE-cCCcEE-EEe
Q 002493 236 CFHPELPIIITGS-EDGTVR-IWH 257 (915)
Q Consensus 236 ~~~~~~~~l~~~~-~dg~v~-iwd 257 (915)
.|......|++++ .|..++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 6644335677754 344433 443
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=1.3e-08 Score=111.68 Aligned_cols=255 Identities=11% Similarity=0.007 Sum_probs=164.2
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-E
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-l 105 (915)
+..+++++.+|.|.-+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 56788888899999999999998877665443222222 256788899999999999999999887765332 2221 1
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccE-----EEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002493 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (915)
.. .+..++.++.+|.|+.||.+++...- ........+ .+.... +..++.++.++.+..+|..+++....
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceee-EEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeee
Confidence 12 24577888889999999999884322 222111111 111121 24677888889999999998876654
Q ss_pred EecCCC----C---eeEEEEEe--CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002493 181 LDAHQK----G---VNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 181 ~~~~~~----~---v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
...... . +..+.-+| .++ .+++++.+|.++.||..+|+.+...... ...... ..+..+++++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECC--EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCC
Confidence 321100 0 00010011 122 6888888999999999999887766521 112222 2456788888999
Q ss_pred cEEEEeCCCcceeeeeecC-CccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 252 TVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.|..+|..+++.+...... .....+... .+..|++++.+|.+.++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 9999999999887665321 111222222 35688888888888773
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=1.4e-08 Score=111.27 Aligned_cols=256 Identities=12% Similarity=0.051 Sum_probs=167.7
Q ss_pred CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE--
Q 002493 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-- 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~-- 103 (915)
++..+++++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45678888889999999999999887665332 22221111 345778888899999999999998877654332211
Q ss_pred ---EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc------c---E-EEEEEccCCCCEEEEEECCCcEEEE
Q 002493 104 ---CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH------Y---V-MQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 104 ---~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~---v-~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+.... +..++.++.+|.+..+|..++...-..-..... . + .+..+ .+..+++++.+|.+..|
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEE
Confidence 11121 246788888899999999888433221110000 0 0 11112 24577788889999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEc
Q 002493 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~ 249 (915)
|..+++........ ....... .+. .+++++.+|.+..+|..+++.+........ ...+... .+..+++++.
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 99998876655421 1122222 233 588888999999999999988776532222 2222222 3568899999
Q ss_pred CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+|.|+++|..+|+.+..+..+...++.--...+ ..|++++.||.++.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 999999999999999888866544333222233 45888999998865
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=3.5e-09 Score=103.29 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=181.1
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002493 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd-~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
.+..+++|...|+.....|...-+++.+.|.+++||- .++++.-..+ ...+.+++++.+++....|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4456778888888888888888899999999999994 4455544443 2456789999999999999999999999988
Q ss_pred ECCCCe---eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEE
Q 002493 127 DWEKGW---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 127 d~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
.+.... ...+....|...++.+-|+- ....+++.+.|..+.---.+++...-.+.- .....++.+.-. +..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~----~~f 169 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL----YAF 169 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE----EEE
Confidence 765321 33445567899999999987 678888888887764333333332211110 000111111110 345
Q ss_pred EEeCCCeEEEEEC--CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEe
Q 002493 204 TGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (915)
Q Consensus 204 ~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 280 (915)
.|...|.|..-.+ ..-.++.++.+|.+.+.+++|.|...++.+|..|..+.+||+...+ ....+.++...|..++.-
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 5555666655544 3456788999999999999999999999999999999999987554 445677888889999998
Q ss_pred cCCCEEEEEecCCeEEEecC
Q 002493 281 KSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~ 300 (915)
+--+.+.+++.||.|.+|..
T Consensus 250 ~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhheeeeeccCCCeEEEEec
Confidence 88999999999999999853
No 282
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=3e-09 Score=113.37 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=112.5
Q ss_pred eeeeecccCCHHHHHHHHHHcCChhH----------------HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHH---
Q 002493 645 RFELAIQLGRLEVAQEIATEVQSESK----------------WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYS--- 705 (915)
Q Consensus 645 ~f~~~l~l~~~~~A~~~a~~~~~~~~----------------w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~--- 705 (915)
+.-|+-.|.+|++|..+|+-..+|.+ =...|+.-++.|+--.|...|.+++-..+++++..
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHH
Confidence 34778899999999999987766542 12345556666777778888888888777766543
Q ss_pred -hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002493 706 -SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 706 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~ 782 (915)
.+.|-+.++.++....+...+..|+.+|.++.++++|+++|.+.+.+-+|+++||--.|.++-.+.+.|..+|...+
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH
Confidence 25566677888888888888999999999999999999999999999999999999999999999999999986544
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.1e-07 Score=115.27 Aligned_cols=238 Identities=11% Similarity=0.142 Sum_probs=159.0
Q ss_pred EEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEe-c-------------CCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002493 19 KSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEV-T-------------ELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 19 ~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~g~~-dg~i~ 82 (915)
..+++++++. .+++-..++.|.+||.. +..+..+.. . -.....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688988644 44444557889999965 444443332 1 113578999999887766654 57899
Q ss_pred EEECCCCceeEEEecC-----------------CCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecC---
Q 002493 83 VYNYNTMDKVKVFEAH-----------------TDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--- 141 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 141 (915)
++|..++. +.++.+. -.....++|+|+ +..+++.+.++.|++||..++.. . .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-R-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-E-EEecCCcc
Confidence 99987754 3333210 113467999994 55556667789999999987632 2 11111
Q ss_pred ------------CccEEEEEEccCCCC-EEEEEECCCcEEEEECCCCCCceEEec-------------C--------CCC
Q 002493 142 ------------SHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTLDA-------------H--------QKG 187 (915)
Q Consensus 142 ------------~~~v~~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~--------~~~ 187 (915)
-.....++++| +++ ++++-+.++.|++||+.++.......+ . -..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 12345789999 555 666667789999999987543211100 0 112
Q ss_pred eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-------------CCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002493 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------GHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
...++++++|+ ++++-+.+++|++||..++....... +.......++++++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCc--EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 35788888876 77888889999999998766543221 1122467899999999888888999999
Q ss_pred EEeCCCcce
Q 002493 255 IWHATTYRL 263 (915)
Q Consensus 255 iwd~~~~~~ 263 (915)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=6e-10 Score=129.77 Aligned_cols=196 Identities=17% Similarity=0.310 Sum_probs=160.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (915)
+-..|.++.=+|...+-++|+.||.|++|....++.+..+. .....++.+.|+.+|+.+.++..||.+.+|.... ++
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 44568888889999999999999999999999888887775 3347899999999999999999999999999873 56
Q ss_pred EEEeecCCccEEEEEEccCCCCEEEEEE---CCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002493 135 TQIFEGHSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
......|......+.|-. ..+++++ .++.+.+||..-.. .-..-..|.++++++++.|... +|++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCCcCc
Confidence 667778888888888863 5666654 46889999964322 1222278999999999999877 8999999999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002493 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
|++||++..+.++.++. ++ ...++++|+..|.++||++....++.++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998777666653 44 45689999999999999999887776654
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=3.5e-08 Score=93.11 Aligned_cols=238 Identities=12% Similarity=0.002 Sum_probs=160.2
Q ss_pred EEEEcC-----CCCeEEEEEcCCcEEEEECCCCce-eEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcee
Q 002493 20 SVDLHP-----SEPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 20 ~~~~sp-----~~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
.|.|-| .-.+||.|+..|...+|...+.+. .+....|...|+-+.=.. ....+..++.|.++++.++..+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455666 234799999999999999886543 333334444333222111 2234667778888888877644332
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEE-EeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
....-..-.+.++.++++++++++.++...|..|.++.... ... ........-.+..|+. ....||+++.||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEE
Confidence 22221112378999999999999999999999999875422 222 2233344456788988 78899999999999999
Q ss_pred ECCCCCCc-----eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-------Cc-cCeEEEEE
Q 002493 171 NLGSPDPN-----FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HT-HNVSAVCF 237 (915)
Q Consensus 171 d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~-~~i~~i~~ 237 (915)
|++..... .+-..|.+.+..+.|++.|.-.+|+..-.-+.+.+.|++++...+.+.. |. ..|...+|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 99875432 1224588899999999987766777777778999999999876554432 22 23777778
Q ss_pred eCCCCEEEEEEcCCcEEEEeCC
Q 002493 238 HPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+.++..+.+.+++ .+.-|++.
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cCCCcccccccch-hhheeecc
Confidence 8777766666554 44555544
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.7e-06 Score=86.22 Aligned_cols=210 Identities=12% Similarity=0.129 Sum_probs=135.2
Q ss_pred CCcEEEEECCCC--cee-EEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC--CceeE--EEecCCCCEEEE
Q 002493 36 SGTVCIWNYQSQ--TMA-KSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT--MDKVK--VFEAHTDYIRCV 105 (915)
Q Consensus 36 dg~v~iwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l 105 (915)
+.-|++|++.+. ++. ..+-...+.++-++|+|+++.|.++.. +|.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998743 211 112235667889999999999998855 46787777764 44322 222223344889
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCeeEEE--EeecCCcc----------EEEEEEccCCCCEEEEEEC-CCcEEEEE
Q 002493 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQ--IFEGHSHY----------VMQVTFNPKDTNTFASASL-DRTIKIWN 171 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~~----------v~~~~~~p~~~~~l~~~~~-dg~i~i~d 171 (915)
+++++|++++++.. .|.|.++-+.....+.. ....|.+. +.+..+.| +++++++... --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998865 58899998865212211 12224333 77888999 8888887664 23689999
Q ss_pred CCCCCCceEE---ecCCCCeeEEEEEeCCCcCEEE-EEeCCCeEEEEECCCC-cE---EEEecC------CccCeEEEEE
Q 002493 172 LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTK-SC---VQTLEG------HTHNVSAVCF 237 (915)
Q Consensus 172 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~-~~---~~~~~~------~~~~i~~i~~ 237 (915)
+..++....- -....+...|.|+|+++ +.. +.--+++|.+|.+... .. ++.+.. .......|.+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k--~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGK--YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCc--EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 9876543211 13445678999999998 443 3445899999998763 22 222211 1234566777
Q ss_pred eCCCCEEEEEE
Q 002493 238 HPELPIIITGS 248 (915)
Q Consensus 238 ~~~~~~l~~~~ 248 (915)
+|||++|.++.
T Consensus 252 s~dGrFLYasN 262 (346)
T COG2706 252 SPDGRFLYASN 262 (346)
T ss_pred CCCCCEEEEec
Confidence 77777776653
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=2e-08 Score=96.42 Aligned_cols=238 Identities=17% Similarity=0.284 Sum_probs=163.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
...|+++.|...|.+|++|...|.|.+|.-+... ....|++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754322 122344553 2477788876543 57777
Q ss_pred EcCCeEEEEECCCCe-----------------------------------------eEEEEe-ecCCccEEEEEEccCCC
Q 002493 118 SDDMLIKLWDWEKGW-----------------------------------------MCTQIF-EGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~-----------------------------------------~~~~~~-~~~~~~v~~~~~~p~~~ 155 (915)
+.|.+|++|.+.... ...++. ..|.-.|.++.++. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999875320 001111 34666788999987 66
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE---ecCC-----CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE------
Q 002493 156 NTFASASLDRTIKIWNLGSPDPNFTL---DAHQ-----KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (915)
..++++ .|-.|.+|++.-....+.+ ++|. .-|++..|+|.... ++.-.++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCchh
Confidence 666654 5788999998655443333 2232 34778888887654 677777889999999984221
Q ss_pred EE----------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCC------------ccE---E
Q 002493 222 VQ----------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL------------ERV---W 275 (915)
Q Consensus 222 ~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~------------~~v---~ 275 (915)
+. -+.+-...|+.+.|+++|+++++-+.- +|+|||++..+ ++.++..|. ..| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11 112233568899999999999987754 89999987644 555554331 222 3
Q ss_pred EEEEecCCCEEEEEecCCeEEEe
Q 002493 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 276 ~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.+.|+.|.+.+.+|+......++
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 57899999999999888777764
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=7.1e-09 Score=99.50 Aligned_cols=240 Identities=19% Similarity=0.372 Sum_probs=167.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-----eeEEEEecCC------------CEEEEEEeCCC--CEEEE
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTEL------------PVRSAKFVARK--QWVVA 74 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~~~~~--~~l~~ 74 (915)
..+.|+++.|...|.||++|...|.|.+|.-+... ....|++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999854422 2233555542 57888998765 34667
Q ss_pred EeCCCeEEEEECCCC------------------c-------------------ee-----EEE-ecCCCCEEEEEEcCCC
Q 002493 75 GADDMFIRVYNYNTM------------------D-------------------KV-----KVF-EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 75 g~~dg~i~vwd~~~~------------------~-------------------~~-----~~~-~~~~~~i~~l~~s~~~ 111 (915)
.+.|.+|++|.+... + .+ +.. ..|.-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999976321 0 00 111 2566678899999988
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEE--eecCC-----ccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC------c
Q 002493 112 PYVLSSSDDMLIKLWDWEKGWMCTQI--FEGHS-----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------N 178 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~-----~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~ 178 (915)
..++++ +|-.|.+|+++-......+ ..+|. .-|++..|+|...+.|.-++..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 5678999998743222222 23332 35788999998888888899999999999984321 1
Q ss_pred eEE----------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCc------------cCe---
Q 002493 179 FTL----------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT------------HNV--- 232 (915)
Q Consensus 179 ~~~----------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~------------~~i--- 232 (915)
... ......|..+.|+++|. |+++ .+--+|++||.+. ..++.++..|. ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIls-RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILS-RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCc--EEEE-eccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 111 12234677889999887 5555 4457999999986 45677764432 122
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEe
Q 002493 233 SAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd 257 (915)
..+.|+.|.+.+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3577888889999999888777765
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=2.5e-09 Score=114.07 Aligned_cols=282 Identities=18% Similarity=0.195 Sum_probs=194.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC-CceeEEEEe-cCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC--
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT-- 88 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~g~~dg~i~vwd~~~-- 88 (915)
.+++.++..+|.|+-+|.++.-| +.+-|+.. +...+-+.. ..-.|-...|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 35678899999999999988776 55666654 333333331 12347778898753 3334444445566898753
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc
Q 002493 89 -MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
...-..+.+|...|+.+.|+|+.+ .+++++.|-.+..||+++.......+..-...-..+.|+-.+++.+++. ..+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND 181 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCc
Confidence 223345578999999999999775 6789999999999999987666666655556678899998777777764 4567
Q ss_pred EEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE-EEecCCccCeEEEEEeCCCCEE
Q 002493 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-QTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 167 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~i~~~~~~~~l 244 (915)
|.+||++.+ .+...+++|-..|+.+.|...... .+.+.+.||+|+.||....... ........+|+.-++.|-|.-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 999999865 466778888888888888764333 5889999999999998753321 1122245567777777755422
Q ss_pred EE--EEcCCcEEEEe---------CCC-cceeeeeecCCccEEEEEEecCCC----------EEEEEecCCeEEEec
Q 002493 245 IT--GSEDGTVRIWH---------ATT-YRLENTLNYGLERVWAIGYMKSSR----------RIVIGYDEGTIMVKI 299 (915)
Q Consensus 245 ~~--~~~dg~v~iwd---------~~~-~~~~~~~~~~~~~v~~i~~~~~~~----------~l~~g~~dg~v~i~~ 299 (915)
++ .-.+..+.+++ ..+ .+.+.++.+|...|....|...+. .|++-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 22 11122444443 322 346788889988887777755433 688999999999984
No 290
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=2.1e-06 Score=81.08 Aligned_cols=189 Identities=12% Similarity=0.005 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++.|+..+.+.--|..+|+++..-. ...++.+-+.- -|++++.|+..|.+++.+.+||.+...+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577888889999999999998876533 23334333333 577899999999999999999988887764333223445
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe--cC
Q 002493 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AH 184 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~ 184 (915)
..+++..+..|+.|++.+..|.++. .+....+.......+-+..| ....|..+...|.+.--..+.... ..+- ..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~ 177 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSS-TEFWAATR 177 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCc-ceehhhhc
Confidence 6778999999999999999999886 33333333333344455666 344455555566655444433311 1111 11
Q ss_pred CCCeeE--EEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002493 185 QKGVNC--VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 185 ~~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
.+++.. ++. +. .+..+.-||.+.-+| ..|+.+..+.
T Consensus 178 ~~PiF~splcv---~~--sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 178 FGPIFASPLCV---GS--SVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred CCccccCceec---cc--eEEEEEeccEEEEEc-CCCcEEEeec
Confidence 222221 111 11 355556666666666 4455555443
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=6.2e-07 Score=86.67 Aligned_cols=236 Identities=11% Similarity=0.147 Sum_probs=140.2
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCC--ceeEEEEecC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTE---LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.++.+++|+.||+.. |..|.|-..+.. ..+.....+. ..=+-++||||+..||.+...|+|++||+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 367789999888865 777888765543 2333333332 2457899999999999999999999999875 33333
Q ss_pred Eec-------CCCCEEEEEEcCCC------CEEEEEEcCCeEEEEECCC----CeeEEEEee---cCCccEEEEEEccCC
Q 002493 95 FEA-------HTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWEK----GWMCTQIFE---GHSHYVMQVTFNPKD 154 (915)
Q Consensus 95 ~~~-------~~~~i~~l~~s~~~------~~l~~~~~dg~i~iwd~~~----~~~~~~~~~---~~~~~v~~~~~~p~~ 154 (915)
+.. -...|..|.|.+.. ..|++-..+|.++-|-+.. +......+. .+...|.++.++| .
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-K 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-C
Confidence 331 12457777775532 1466667788887776532 112222222 2467899999999 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE-EEEeCCC------eEEEEECCCCcEEEEecC
Q 002493 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL-ITGSDDH------TAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg------~i~iwd~~~~~~~~~~~~ 227 (915)
.++|++|+.... +.+. -.....++++-....+... +. ++...++ +..+|.+-+.+.......
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccceeeeecccc
Confidence 677777765322 0000 0111222222222211111 11 1111111 112333222221111122
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec
Q 002493 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 228 ~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
....|..+..||||+.|++...+|.|.+|++.+-++......
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 456799999999999999999999999999988776665543
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=9.2e-08 Score=104.39 Aligned_cols=190 Identities=11% Similarity=-0.009 Sum_probs=123.7
Q ss_pred CEEEEEEcCCCCe-EEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 002493 17 RVKSVDLHPSEPW-ILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTM 89 (915)
Q Consensus 17 ~v~~~~~sp~~~~-la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~ 89 (915)
.+....|||||+. ++..+.. ..|.++|+.+++..... ...+......|+|||+.|+.... +..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999985 6654443 46999999888665443 35566777899999998875533 357888898877
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECC--
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-- 164 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-- 164 (915)
+.. .+..+........|+|||+.|+..+.. | .|.++|+.++.....+..+. . ...|+| +++.++..+..
T Consensus 268 ~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SP-DG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVST-YKNYIVYSSRETN 341 (419)
T ss_pred cEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECC-CCCEEEEEEcCCC
Confidence 643 444344434566899999988876643 2 68888988773322222222 1 248999 77777665543
Q ss_pred -------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-C--CeEEEEECC
Q 002493 165 -------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQ 217 (915)
Q Consensus 165 -------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~ 217 (915)
..|.+.|+.++.. ..+... .......|+|+|.. ++.... . ..+.++++.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~--I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGS--IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCE--EEEEEccCCcEEEEEEecC
Confidence 2678888877754 333332 23346889999984 433332 2 236666765
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.1e-09 Score=112.52 Aligned_cols=241 Identities=13% Similarity=0.167 Sum_probs=168.4
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002493 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
+..+.+|...|+.++-..+.+.+++++.|++|++|.++. ..+..++..|+.+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778988999988888888999999999999999863 33566778999999999999998887765 788
Q ss_pred EEEEECCCCeeEEEEeec-CCccEEEEEEccC-CCCEEEE-EECCCcEEEEECCCCCCceEEe-----cCCCCeeEEEEE
Q 002493 123 IKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPK-DTNTFAS-ASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~ 194 (915)
|.+||.--++...+.... ..+.+..+..-|. +...++. ++...+|+++|.+...-...++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998766333322211 1122222333231 3334444 4778999999999887665553 334557899998
Q ss_pred eCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEE-EeCCCcceeeeeecCCcc
Q 002493 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI-WHATTYRLENTLNYGLER 273 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~ 273 (915)
+.|+ .++++-++|.|.+.|.++|+.+..++...-....++ .|..+.++....|.++.+ |....+......+.+..+
T Consensus 886 ~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 886 DKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 8888 699999999999999999999888876554444444 344567777778888888 987777766555544332
Q ss_pred EEEEEEecCCCEEEEEecCCeEEE
Q 002493 274 VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 274 v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
..-+ ..-|..+++......+.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEE
Confidence 2111 112455666655555555
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.99 E-value=3.5e-07 Score=93.21 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=116.6
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCC-cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 13 QRSERVKSVDLHPSEPWILASLYSG-TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
+|.++|+-..+..+++-++.|..|| .+-|||..+++. +.+...-+.|.++..+++|++++++.....|.++|+.+++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 5777899999999888899999998 899999877754 55666778899999999999999999999999999999988
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
...-+...+-|+.+.|||++++++-+--+ ..|+++|+.++ +...... ....=.+-+|.| ++++|..-+
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 77666777889999999999999977655 46899999987 3333222 223335667888 666665443
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.6e-07 Score=98.97 Aligned_cols=210 Identities=15% Similarity=0.035 Sum_probs=131.4
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE-EEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW-VVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
..|.+-|.... ..+.+.... ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35666564433 334344333 7788999999985 654433 3579999998887655543 455567788999998
Q ss_pred EEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCC
Q 002493 113 YVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 113 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~ 186 (915)
.|+.... +..|.++|+.++ ...+. ..+........|+| |++.++..+. .+ .|.+.|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~~~L-T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TLTQI-TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cEEEc-ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 7765432 357888898877 33333 33333344568999 7776666553 33 588888887765332221 11
Q ss_pred CeeEEEEEeCCCcCEEEEEeCC---------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEE
Q 002493 187 GVNCVDYFTGGDKPYLITGSDD---------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVR 254 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~ 254 (915)
....|+|+|+. ++..... ..|.+.|+.++.. ..+... .......|+|||+.|+..+..+ .+.
T Consensus 322 --~~~~~SPDG~~--Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 322 --NNSSVSTYKNY--IVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred --cCceECCCCCE--EEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 12489999984 5444332 3688889887764 333322 2233588999999877665432 355
Q ss_pred EEeCC
Q 002493 255 IWHAT 259 (915)
Q Consensus 255 iwd~~ 259 (915)
+.++.
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 66654
No 296
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.5e-06 Score=85.12 Aligned_cols=251 Identities=12% Similarity=0.141 Sum_probs=165.5
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCC--CceeE--EEEecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQS--QTMAK--SFEVTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~ 82 (915)
+-.+.+.++-|+|+|+++.|.++.. .|.|.-|.+.. |++.. .......+-+.++++++|++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3356778899999999999998765 46787777664 54322 22223344588999999999999876 68999
Q ss_pred EEECCC-CceeE--EEecCCCC----------EEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEE---eecCCccE
Q 002493 83 VYNYNT-MDKVK--VFEAHTDY----------IRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FEGHSHYV 145 (915)
Q Consensus 83 vwd~~~-~~~~~--~~~~~~~~----------i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~~v 145 (915)
++-++. |.... .+-.|.+. +.+..+.|++++|++..- --.|.+|++..+. +... ........
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc-cccccccccCCCCCc
Confidence 998865 33322 22235444 889999999999998753 2369999998662 2211 11234456
Q ss_pred EEEEEccCCCCEEEEE-ECCCcEEEEECCCC-CCceEEe---------cCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEE
Q 002493 146 MQVTFNPKDTNTFASA-SLDRTIKIWNLGSP-DPNFTLD---------AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKV 213 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~-~~dg~i~i~d~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~i 213 (915)
..+.|+| ++++..+. -.+++|.+|..+.. .....++ ........+.++++|+ +|.++.. ...|.+
T Consensus 194 RHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--FLYasNRg~dsI~~ 270 (346)
T COG2706 194 RHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--FLYASNRGHDSIAV 270 (346)
T ss_pred ceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--EEEEecCCCCeEEE
Confidence 8899999 77766554 45899999998774 1122221 1234456788888887 5655432 346777
Q ss_pred EECCC--CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCC-cEEEEeC--CCcceee
Q 002493 214 WDYQT--KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHA--TTYRLEN 265 (915)
Q Consensus 214 wd~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~v~iwd~--~~~~~~~ 265 (915)
|.+.. ++. +.....+........|+|.|++|+++..++ .|.+|.. .+|++..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 77654 322 222233444467899999999999888664 5777754 4565543
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=1.2e-08 Score=102.11 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=120.2
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTM 89 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~ 89 (915)
.+..+..+|++++||++..+....++++.... +..... -...-+++.|..+.....++.. ...+.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556778899999999888887777765443 222222 2233455666666655555544 445666665553
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEE
Q 002493 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
.. ..+-+|-+.++.++|+||+++|+++..|..|++-.............||...|..++..+ +..|++++.|++|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 33 344579999999999999999999999999999988876566667778999999999985 667999999999999
Q ss_pred EECCCCCCceEE
Q 002493 170 WNLGSPDPNFTL 181 (915)
Q Consensus 170 ~d~~~~~~~~~~ 181 (915)
||+.+++...++
T Consensus 220 Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 220 WDITSGKLLDTC 231 (390)
T ss_pred EecccCCccccc
Confidence 999999877555
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.5e-09 Score=110.10 Aligned_cols=279 Identities=12% Similarity=0.136 Sum_probs=188.5
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i 81 (915)
..+.||+..|+.++--.+.+-+++++.|.+|++|.++.. .+..++..|+.+|.++.|-.+-++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 357899999999988888888999999999999998642 3556777899999999999998887764 7889
Q ss_pred EEEECCCCceeEEEe--cCCCCEEEEEEcC--CCCEEE-EEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEc
Q 002493 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHP--TLPYVL-SSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFN 151 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~--~~~~~i~~l~~s~--~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~ 151 (915)
.+||.--++.+..+. ...+.+..+..-+ +...++ .|+...+|+++|.+.. .....+ .+.+..+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEec
Confidence 999987777655332 1112223333333 334444 4477899999999876 222222 2334568899999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEE-EECCCCcEEEEecCCcc
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV-WDYQTKSCVQTLEGHTH 230 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~ 230 (915)
| .++.++.+-.+|.|.+.|.++|+.+..++........++- |... .++....|.++.+ |..-.|....+.+....
T Consensus 886 ~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq--~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 886 D-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQ--ALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred c-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhH--HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 8 8999999999999999999999877766554444433332 2222 5777777888888 87666655444443322
Q ss_pred CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-----eeeeee--cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYR-----LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 231 ~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~--~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
+..- .-.-|+.+++....+.+.+|--. +. .+..+. .-.+..++++.-|-..-+..|...|.|.+
T Consensus 962 pahf--lqsvgpSLV~a~~Gn~lgVYad~-a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHF--LQSVGPSLVTAQNGNILGVYADS-AELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhh--hhccCceeEEeccCcEEEEEecc-hhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2111 11235567777766677777521 11 111111 12356788888888777888888888765
No 299
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=9.3e-07 Score=107.42 Aligned_cols=234 Identities=10% Similarity=0.094 Sum_probs=157.5
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEECCCCceeEEEec--------------CCCCEEEEEEcCCCCEEEEEEc-CCeEE
Q 002493 61 RSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKVKVFEA--------------HTDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (915)
Q Consensus 61 ~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~~~~l~~~~~-dg~i~ 124 (915)
..++++++ +..+++-+.++.|.+||.. ++.+..+.. +-.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5556666678899999976 454444432 1123678999998887766654 57799
Q ss_pred EEECCCCeeEEEEeecC-----------------CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec----
Q 002493 125 LWDWEKGWMCTQIFEGH-----------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---- 183 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~-----------------~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 183 (915)
++|..++ ... ++.+. -.....++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~-~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNE-TVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCC-EEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876 322 22110 1123578999866677777788899999998765422 2211
Q ss_pred -----------CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC---------------------CccC
Q 002493 184 -----------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---------------------HTHN 231 (915)
Q Consensus 184 -----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~ 231 (915)
.-.....++++|+++. ++++-+.++.|++||+.++.......+ ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1123467899998764 455666779999999987653211100 0112
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec-------------CCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 232 VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 232 i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
..+++++++|.++++-+.++.|++||..++........ .......++++++|+.+++.+.++.|+++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46889999999888888899999999887765432211 12346789999999988888888988886
Q ss_pred c
Q 002493 299 I 299 (915)
Q Consensus 299 ~ 299 (915)
.
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 4
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=7.7e-09 Score=110.42 Aligned_cols=243 Identities=19% Similarity=0.261 Sum_probs=177.6
Q ss_pred EEEEEEcCCC--CeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce
Q 002493 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 18 v~~~~~sp~~--~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
|-.+.|||.. ++-++...+..-.||++.. ...-..+.+|...|+.+.|+|.. ..+++++.|..+..||+.+...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5667787743 4455555566778998753 33445577899999999999965 5688999999999999987543
Q ss_pred -eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 92 -VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 -~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+..+..-......++|+-..+.+++.+....|.+||.+.+..+...+++|...|..+.|+......+.+++.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 3444444456678999988877888888889999999988888899999999999999987667789999999999999
Q ss_pred ECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE---------ECCC-CcEEEEecCCccCeEEEEEeC
Q 002493 171 NLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW---------DYQT-KSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 171 d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~i~~i~~~~ 239 (915)
|....... ........+|..-++.|-|++.++.-.-.+..+-++ +..+ .+++.+|.+|...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 98654322 122234567777777787776333322222233333 3322 457899999999887776654
Q ss_pred CCC----------EEEEEEcCCcEEEEeCCC
Q 002493 240 ELP----------IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 240 ~~~----------~l~~~~~dg~v~iwd~~~ 260 (915)
.+. .|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 322 689999999999998753
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=7.4e-10 Score=120.15 Aligned_cols=266 Identities=13% Similarity=0.165 Sum_probs=186.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC--eE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--FI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg--~i 81 (915)
+|...+.+..|...-+|++||-+.+.|++|+..|.|++|++.+|........|.++|+-+.-+.+|..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5667788899999999999999999999999999999999999999999999999999999999999888765533 57
Q ss_pred EEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC---CccEEEEEEccCCCCE
Q 002493 82 RVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH---SHYVMQVTFNPKDTNT 157 (915)
Q Consensus 82 ~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~~ 157 (915)
.+|++.+ +...+.|.. -.++.|+...+.-+.|+......+||+.++..+...+.+. +..-.+..|+| +..+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccce
Confidence 7899764 444555542 3578888876655666665678999999985554434321 22236788999 5544
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002493 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
++ .|| .+||.+..+.+..+...... ..-.|+|+|.. ++..+ .|||+++.+.++.+.... -..+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~e--VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNE--VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCce--EEeec-----hhhhhHHHHHHhcCcccc--ceEEEe
Confidence 44 455 37999988777666543322 23358888874 55554 489999988777665433 356778
Q ss_pred eCCCCEEEEEE-----c------------CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 238 HPELPIIITGS-----E------------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 238 ~~~~~~l~~~~-----~------------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
+..|..+...- . -...+-++...++.+.++... ..+..++-+|...++++-.
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 88777554322 0 012444555556666666544 4566677777776666543
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=3.2e-06 Score=86.39 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=147.5
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEc-CCCCEEEEEEcCCeEEEEECCCCeeEEEEee
Q 002493 62 SAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH-PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 62 ~~~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
+..|.+ ++.++++-...+.|..|+..+++... +.... ...+++. ++ ..|+++...+ +.++|+.++ .......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC-cEEEEee
Confidence 578998 66666666678999999998865433 33222 7778888 55 5666666654 566698887 3333333
Q ss_pred c-----CCccEEEEEEccCCCCEEEEEECC--------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 140 G-----HSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 140 ~-----~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
. .......+++.| ++++.++.... |.|..++.. ++. ..+...-...+.++|+|+++. ++++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~-lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKT-LYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSE-EEEEET
T ss_pred ccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchh-eeeccc
Confidence 2 345678999999 78877766543 557777776 443 333334556789999999873 445667
Q ss_pred CCCeEEEEECCCC-c------EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE
Q 002493 207 DDHTAKVWDYQTK-S------CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 207 ~dg~i~iwd~~~~-~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
..+.|..+++... . ....+....+..-.+++..+|++.++....+.|.+++.. |+.+..+..+...+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7889999998532 2 122223222347789999999988888888999999976 9988888888678999999
Q ss_pred e-cCCCEEEEEe
Q 002493 280 M-KSSRRIVIGY 290 (915)
Q Consensus 280 ~-~~~~~l~~g~ 290 (915)
. ++.+.|.+.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6667766654
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=6e-07 Score=91.57 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=145.5
Q ss_pred CCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002493 36 SGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
+|.|..||..+|+.+....... ....+. ..+++..+++++.++.|..||..+|+.+..+.. .+.+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999998886421 222211 334667788888999999999999999888775 22222111 223556
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCC---ccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCe--
Q 002493 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-- 188 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-- 188 (915)
+++++.++.|..+|..++...-....... .......... .++.++++..++.|..+|+.+++.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 78888889999999998855444222221 1112222222 36788888889999999999999888776544221
Q ss_pred --------eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 189 --------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 189 --------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
..-... .+. .++++..++.+..+|..+++.+.... ...+.. ...+.+..|++++.++.|.+||+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVI-SDG--RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEEC-CTT--EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEE-ECC--EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 111111 222 57777777754444999998765433 222222 2456777888888999999999999
Q ss_pred cceeee
Q 002493 261 YRLENT 266 (915)
Q Consensus 261 ~~~~~~ 266 (915)
|+....
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 987653
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=3e-07 Score=86.98 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=148.1
Q ss_pred EcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcee-EEEecCCCCEEEE
Q 002493 34 LYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKV-KVFEAHTDYIRCV 105 (915)
Q Consensus 34 ~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~l 105 (915)
.....|.+|++-+.. .+... ..+.|-| .-.+|+.|+..|...+|...+.+.. .....|...|+-.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 345568888865543 33322 2344444 4468999999999999999876543 2333444433222
Q ss_pred EEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC-c-e-EE
Q 002493 106 AVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-N-F-TL 181 (915)
Q Consensus 106 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~ 181 (915)
.=.-+ .-.+..++.|.++++.+++.+.. ........-.+.++.+++ ++.++++.+....|..|.+..... + . ..
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~-~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSN-KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcc-cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 11111 22477888899999998876522 222211112378899999 999999999999999998865432 2 2 22
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE-E----EecCCccCeEEEEEeCCCC--EEEEEEcCCcEE
Q 002493 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-Q----TLEGHTHNVSAVCFHPELP--IIITGSEDGTVR 254 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~----~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~v~ 254 (915)
......-.+..|+.... .+++++.||++.|||++..... . +-..|.+.+..+.|++.|. +|+..-.-+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred cccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 23344456777876655 7999999999999999874432 2 2234788999999998665 455544567899
Q ss_pred EEeCCCcceeeeeecC
Q 002493 255 IWHATTYRLENTLNYG 270 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~ 270 (915)
+.|+++++..+.+...
T Consensus 278 v~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEcccCceeeEEecC
Confidence 9999999866655443
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=1.8e-06 Score=94.95 Aligned_cols=259 Identities=11% Similarity=-0.031 Sum_probs=158.4
Q ss_pred CCCeEEEEEcCCcEEEEECCCCceeEEEEecCC-CE-E-----EEE--EeCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 002493 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL-PV-R-----SAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 96 (915)
.+..+.+++.+|.|.-+|..+|+.+........ .. . .+. -.-.+..+++++.+|.+..+|.++|+.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356778888889999999999998877653321 00 0 000 01135678888899999999999999888776
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCcc----EEEEEEccCCCCEEEEEECCCcEEEEEC
Q 002493 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY----VMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.......+... .+..+++++.+|.|..+|..++...-..-...... ..+... .+..++.++.+|.+..+|.
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEc
Confidence 43321111122 24467788889999999999884432221111100 011111 1245777788999999999
Q ss_pred CCCCCceEEecCCC-------CeeEEEEEe--CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002493 173 GSPDPNFTLDAHQK-------GVNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 173 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
.+++.......... ....+..+| .++ .+++++.+|.+..+|..+|+.+...... ....+.. .+..
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~ 296 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGR 296 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCE
Confidence 98887665432110 000111111 122 5777888999999999999887665421 1112222 3557
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002493 244 IITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
++.++.+|.+..+|..+|+.+......... ..+... .+..|++++.+|.+.+
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 888888999999999999877654322111 112222 2456777888887765
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=1.2e-08 Score=95.92 Aligned_cols=152 Identities=14% Similarity=0.266 Sum_probs=102.8
Q ss_pred EcCCCCeEEEEEcCCcEEEEECCCCcee-EEEEecCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCceeEEEe
Q 002493 23 LHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVARKQWVVAGA-----DDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 23 ~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~g~-----~dg~i~vwd~~~~~~~~~~~ 96 (915)
.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++. .-+..+.|+++..+....-.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 3334667999999999999997652111 11111111112223333455444432 12345566655433222222
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 97 AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
...+.|++++-+|..+ .+++|+.||.+.+||++....+...+..|+..+..+.|+|+++..|++++.||.+..||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2334599999999654 56788899999999999887777888999999999999999999999999999999999754
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=4.8e-06 Score=85.10 Aligned_cols=217 Identities=13% Similarity=0.117 Sum_probs=143.8
Q ss_pred EEEEcC-CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002493 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV-ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 20 ~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
++.|.+ ++.++++-...+.|+.|+..++... .+.... ...+++. ++ ..|+++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 6666666556899999998777543 233222 6777887 56 5556665555 45569998866544442
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEEcC--------CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEE-EEEEC
Q 002493 98 -----HTDYIRCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASL 163 (915)
Q Consensus 98 -----~~~~i~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~ 163 (915)
.....+.+++.|+|++.++.... |.|..++.. + ....... .-.....++|+| +++.| ++-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECC-cchheeecccc
Confidence 34567899999999976666543 567888877 4 3333333 235568999999 67655 56677
Q ss_pred CCcEEEEECCCCCC-c---eEE-ecCC--CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002493 164 DRTIKIWNLGSPDP-N---FTL-DAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 164 dg~i~i~d~~~~~~-~---~~~-~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
.+.|..+++..... . ..+ .... +....+++..+|+ +.++....+.|.++|.+ |+.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88899999864332 1 122 2122 2367788877776 67777788999999987 888888876656899999
Q ss_pred Ee-CCCCEEEEEE
Q 002493 237 FH-PELPIIITGS 248 (915)
Q Consensus 237 ~~-~~~~~l~~~~ 248 (915)
|. ++...|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 95 5656555443
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.8e-06 Score=94.95 Aligned_cols=258 Identities=11% Similarity=0.065 Sum_probs=161.5
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC- 104 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~- 104 (915)
+..+++++.+|.+.-+|.++|+.+....... .+.+ ... .+..+++++.+|.|..+|.++|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567778889999999999999888766432 2221 111 2456777888999999999999998877642111100
Q ss_pred EEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC---c---cEEEEEEcc-CCCCEEEEEECCCcEEEEECCCC
Q 002493 105 VAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---YVMQVTFNP-KDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 105 l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~v~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
..-+| .+..++.++.+|.+..+|..++...-..-.... . ....+..+| -.++.+++++.+|.+..+|..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00111 133577788899999999888733221110000 0 000111112 02456777778999999999999
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCcEE
Q 002493 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
+........ ....+.. .++ .+++++.+|.+..+|..+|+.+........ ...+.... +..|+.++.+|.|+
T Consensus 277 ~~~W~~~~~--~~~~~~~--~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~ 348 (394)
T PRK11138 277 QIVWKREYG--SVNDFAV--DGG--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLH 348 (394)
T ss_pred CEEEeecCC--CccCcEE--ECC--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEE
Confidence 876654321 1112222 233 588888999999999999987765432111 12222222 45788899999999
Q ss_pred EEeCCCcceeeeeecCCccEEE-EEEecCCCEEEEEecCCeEEE
Q 002493 255 IWHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~g~~dg~v~i 297 (915)
+.|..+|+.+.........+.+ ..+ .+..|++++.+|.+..
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 9999999988877654333332 222 2457888899988765
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.82 E-value=2.5e-05 Score=84.94 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=94.0
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe-cCCCccee
Q 002493 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK-IGREEPVA 306 (915)
Q Consensus 228 ~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~-~~~~~~~~ 306 (915)
.......+.++|+|+++++++ +|.-.|+.....+.... +.-...+|.+.+ .+|+-..++.|.+. ........
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 344567899999999999855 77888888544443222 333467888844 45665556666662 11111000
Q ss_pred EecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc
Q 002493 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN 386 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~ 386 (915)
.+.+ +..+..+.- |.+|.+.+++.+.+|+....+.
T Consensus 104 ----------------------------------~i~~--------~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~ 138 (443)
T PF04053_consen 104 ----------------------------------SIKL--------PFSVEKIFG---GNLLGVKSSDFICFYDWETGKL 138 (443)
T ss_dssp ----------------------------------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--E
T ss_pred ----------------------------------EEcC--------CcccceEEc---CcEEEEECCCCEEEEEhhHcce
Confidence 0000 001122222 8889999888999998876642
Q ss_pred ---cCccceeEEEEecCCcEEEEecCCeEEEeccCccceeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE
Q 002493 387 ---RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID 463 (915)
Q Consensus 387 ---~~~~~~~~~~~s~~~~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~ 463 (915)
.....+..+.|+++|.+++..++..+.|++.+...... ...+ | -.+ .-..+..+.
T Consensus 139 i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~----~~~~----g------~e~--------~f~~~~E~~ 196 (443)
T PF04053_consen 139 IRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA----IPEE----G------VED--------AFELIHEIS 196 (443)
T ss_dssp EEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH----BTTT----B-------GG--------GEEEEEEE-
T ss_pred eeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc----cccc----C------chh--------ceEEEEEec
Confidence 22334789999999999999988888887654432211 0111 0 000 112334445
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEE
Q 002493 464 VTVKNLYWADSGDLVAIASDTSFYI 488 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~ 488 (915)
..|++..|..| .++..+...+..
T Consensus 197 ~~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 197 ERIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp S--SEEEEETT--EEEEE-TTEEEE
T ss_pred ceeEEEEEEcC--EEEEEcCCeEEE
Confidence 68899999887 555555554444
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=6.7e-06 Score=82.44 Aligned_cols=230 Identities=12% Similarity=0.133 Sum_probs=157.8
Q ss_pred CCEEEEEEcCC-CCeEEEEEcCCc-EEEEECCCCceeEEEEecCCCEE--EEEEeCCCCEEEEEe-----CCCeEEEEEC
Q 002493 16 ERVKSVDLHPS-EPWILASLYSGT-VCIWNYQSQTMAKSFEVTELPVR--SAKFVARKQWVVAGA-----DDMFIRVYNY 86 (915)
Q Consensus 16 ~~v~~~~~sp~-~~~la~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~g~-----~dg~i~vwd~ 86 (915)
.+...++.+|+ ...++.+-.-|. ..+||..+++....+....+.-. .-.||+||++|++.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 45667899994 455666766554 78999999998887765444322 468999999999873 3689999999
Q ss_pred C-CCceeEEEecCCCCEEEEEEcCCCCEEEEEEc------------------CCeEEEEECCCCeeEEE-Ee--ecCCcc
Q 002493 87 N-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD------------------DMLIKLWDWEKGWMCTQ-IF--EGHSHY 144 (915)
Q Consensus 87 ~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~~--~~~~~~ 144 (915)
. +.+.+..+..|.-....+.+.|||+.|+++.. +-++...|..++..+.+ .+ ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 77888889888777788999999988887632 23466666777743333 23 336778
Q ss_pred EEEEEEccCCCCEEEEEECCCc-------EEEEECCCCCCceEE-------ecCCCCeeEEEEEeCCCcCEEE-EEeCCC
Q 002493 145 VMQVTFNPKDTNTFASASLDRT-------IKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLI-TGSDDH 209 (915)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~-~~~~dg 209 (915)
|..+++.+ ++..++..-..|. |-+++. +.....+ ......+-+|+++.++. +++ ++=..+
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~--~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGR--LIAVTSPRGG 239 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCC--EEEEECCCCC
Confidence 99999998 6655554443332 333332 2222222 22346788999998887 454 444678
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002493 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
.+.+||..+++.+.... -..+..++..+++ ++++.+ .|.+.
T Consensus 240 ~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred EEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC-CccEE
Confidence 99999999999887665 3346778877777 555544 44443
No 311
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=9.5e-08 Score=95.89 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=113.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEEecCCCCEEEEEEcCCCCEEEEE---EcCCeEEEEECCCCe
Q 002493 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSS---SDDMLIKLWDWEKGW 132 (915)
Q Consensus 60 v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~---~~dg~i~iwd~~~~~ 132 (915)
...+..++.++++|++..+....++++..... ..... -...-+++.|-.+...+.++ ++...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 44556788899999998888877777654332 22221 12223344444444444444 44556666666553
Q ss_pred eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeE
Q 002493 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 133 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
......+|-+.+..++|+| |++.++++..|..|++-.......+..+ .+|..-|..++..++. .|++++.|+++
T Consensus 143 -~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~tl 217 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKTL 217 (390)
T ss_pred -CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCcE
Confidence 3445568999999999999 8899999999999999887665555444 4699999999987654 58999999999
Q ss_pred EEEECCCCcEEEEec
Q 002493 212 KVWDYQTKSCVQTLE 226 (915)
Q Consensus 212 ~iwd~~~~~~~~~~~ 226 (915)
++||+.+|+.+.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999886654
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.78 E-value=3.7e-05 Score=72.96 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=115.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002493 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 190 (915)
..+++.|+..+.+.-.|..++...-....+ .++.+-+.- -++.++.|+..|.+++.+.+++.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 346778888888888888887443333222 233333332 2678999999999999999999887776543222122
Q ss_pred EEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--eeeeee
Q 002493 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENTLN 268 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~ 268 (915)
....+++. ++..|+.|+..+..|.++..++...+-..+...+-++.|....|..+...|.|.--..+++. ......
T Consensus 99 a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 99 AQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred eEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 33344554 89999999999999999999988876555545556667733344445555665555544442 111111
Q ss_pred cCCccEEE--EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEE
Q 002493 269 YGLERVWA--IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (915)
Q Consensus 269 ~~~~~v~~--i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~ 317 (915)
. .+++.+ ++. ++.+..++-||.+.- +++.|+.+|.
T Consensus 177 ~-~~PiF~splcv---~~sv~i~~VdG~l~~----------f~~sG~qvwr 213 (354)
T KOG4649|consen 177 R-FGPIFASPLCV---GSSVIITTVDGVLTS----------FDESGRQVWR 213 (354)
T ss_pred c-CCccccCceec---cceEEEEEeccEEEE----------EcCCCcEEEe
Confidence 1 122221 111 455677777877765 5566666664
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=1.2e-07 Score=89.17 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=121.6
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCc------------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQT------------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
|+.+.++-+- .|+++..++.+..+...++. ..+.+..|..+-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666554 36666666665555443322 2233333433333333344567799999999999998
Q ss_pred CCCCcee-EEEe-cCCCCEEEEEEcCCCCEEEEEE-----cCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEE
Q 002493 86 YNTMDKV-KVFE-AHTDYIRCVAVHPTLPYVLSSS-----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 86 ~~~~~~~-~~~~-~~~~~i~~l~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
.+....+ ..+. .|.+ -.+.+....+..+.++. .-+..+.|+++............ ..|.+++-+|...+.+
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc-ccchhhhCCcccccEE
Confidence 7541111 1111 1111 11222223344444332 12356677766442222222222 3389999999778889
Q ss_pred EEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002493 159 ASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++|+.||.+.+||.+... +...+..|+.+++-+-|+|.... .|++++.||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 999999999999998764 34556789999999999997654 699999999999999764
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=5e-09 Score=113.88 Aligned_cols=220 Identities=17% Similarity=0.212 Sum_probs=162.8
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC--eEEE
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg--~i~i 125 (915)
+..++|..|+...+|++|+-+.+.|++|+..|.|++|++.+|.......+|...|+-+.-+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999887665533 4678
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe----cCCCCeeEEEEEeCCCcCE
Q 002493 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD----AHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~ 201 (915)
|+..+-......+.. -.++.|+. ....-+.|+......+||+.++.+..++. +....-++..|+|..+ +
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~--L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT--L 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc--e
Confidence 998764344444432 34678876 34444555666678999999998876632 1223347888998876 3
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002493 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
++ .|| .+||.+..+.++.|......+ .-.|+|.|.-++..++ |||++|.++++.+..-. -..+.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence 43 344 479999888777776554333 3469999998888664 79999999887765432 25677777
Q ss_pred CCCEEE
Q 002493 282 SSRRIV 287 (915)
Q Consensus 282 ~~~~l~ 287 (915)
.|..+.
T Consensus 1312 tG~VmY 1317 (1516)
T KOG1832|consen 1312 TGDVMY 1317 (1516)
T ss_pred Cccchh
Confidence 776554
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.5e-07 Score=95.29 Aligned_cols=249 Identities=13% Similarity=0.175 Sum_probs=174.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTM 89 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~ 89 (915)
|.+.|+.+.-+. .+++.+++.||.++.|.-.. -+.++.+..|-+.|.+++.+-++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 677777776554 46899999999999998432 1445566778889999999999999999877 999999998876
Q ss_pred ceeEEEec--CCCCEEEEEEcCCCC--EEEEE-EcCCeEEEEECCCCe-eEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 90 DKVKVFEA--HTDYIRCVAVHPTLP--YVLSS-SDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 ~~~~~~~~--~~~~i~~l~~s~~~~--~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
..+..++. -++.+. ...++... .|+++ -.+|.+.++|-.... .......-|..+|.++.++| .+..+++...
T Consensus 87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence 55433331 122222 11222211 34433 457899999977653 33444456899999999999 8889999999
Q ss_pred CCcEEEEECCC------CCCce---------EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-
Q 002493 164 DRTIKIWNLGS------PDPNF---------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG- 227 (915)
Q Consensus 164 dg~i~i~d~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 227 (915)
.|.|.-|.... ..... .+...+....++.|+|++. .+.+-+.|..|+++++.+|+.++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--cccccCcccEEEEEEeccchhhhhhhcc
Confidence 99999998763 11111 1122345668999999998 588888999999999998876554321
Q ss_pred -------------------------------Cc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002493 228 -------------------------------HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 228 -------------------------------~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
|. ..-+.++|...|++|+-|+.=| |++.++.++...+.+.
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 11 1235567888888888877654 7888888877766654
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.73 E-value=2.6e-05 Score=78.23 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=152.2
Q ss_pred CEEEEEEeC-CCCEEEEEeCCC-eEEEEECCCCceeEEEecCCCCEE--EEEEcCCCCEEEEEEc-----CCeEEEEECC
Q 002493 59 PVRSAKFVA-RKQWVVAGADDM-FIRVYNYNTMDKVKVFEAHTDYIR--CVAVHPTLPYVLSSSD-----DMLIKLWDWE 129 (915)
Q Consensus 59 ~v~~~~~~~-~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~~~~~-----dg~i~iwd~~ 129 (915)
....++.+| ++..++.+-.-| ...+||..+++....+....+.-. .-.||+||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 455678888 445556665544 678999999998887765444332 3689999999998643 5899999999
Q ss_pred CCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC------------------CCcEEEEECCCCCCceE--E--ecCCCC
Q 002493 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL------------------DRTIKIWNLGSPDPNFT--L--DAHQKG 187 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~--~--~~~~~~ 187 (915)
.+......+..|.-....+.+.| ++..|+++.. +.++...|..+++.+.+ + ..|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66566777777766667788999 7767766532 33455666677776655 3 236678
Q ss_pred eeEEEEEeCCCcCEEEEEeC-CC-------eEEEEECCCCcEEEEec-------CCccCeEEEEEeCCCCEEEEEE-cCC
Q 002493 188 VNCVDYFTGGDKPYLITGSD-DH-------TAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHPELPIIITGS-EDG 251 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~-~dg 251 (915)
+..+++.++|. ++.+.. .| .|.+++. ++.+..+. ...+.+-+|++++++..+++.+ ..|
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 88999988875 444432 22 2444443 33232222 2446789999999998776555 667
Q ss_pred cEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeE
Q 002493 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v 295 (915)
.+.+||..+++.+...... .+..++..+++ ++++ +..|.+
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~s-sG~G~~ 279 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVS-SGQGQL 279 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEe-CCCccE
Confidence 8999999999988776544 45666666666 4444 333443
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=7.4e-07 Score=98.28 Aligned_cols=181 Identities=12% Similarity=0.134 Sum_probs=140.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEE
Q 002493 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 148 (915)
+..++.|+-...+..+|+++.+..+...-..+.|.-|.. +++++.+|...|+|.+-|.++. .....+..|++.|..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceeee
Confidence 456777777778889999988877776655545665654 4788999999999999999987 7888999999999887
Q ss_pred EEccCCCCEEEEEEC---------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC--
Q 002493 149 TFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-- 217 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-- 217 (915)
.. .+++|++++. |.-|+|||++..+.+..+.-+.++ .-+.|.|.-.. .+++++..|...+-|..
T Consensus 224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEecccceeecccccc
Confidence 77 4788888775 556899999987766555544444 66778887554 68888999999999943
Q ss_pred -CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEe
Q 002493 218 -TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 218 -~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd 257 (915)
+. ..+..+......+.+++++++|+.++.|..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 12344444455699999999999999999999999997
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.65 E-value=5.9e-06 Score=89.26 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=132.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
|..+|.--+++..+++++.|+..|.+++|+-..+...+. ..+..+.+..+..+++..++|.|+..|.|.++-++.+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 566787788888999999999999999999766654432 2234556777788899999999999999999988764332
Q ss_pred EE-----E-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---eeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 93 KV-----F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 93 ~~-----~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
.. . +.|+..|++++|++++..+++|...|.|..-.+++. ....+.+....+.|..+.... + +|++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~-~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--S-YLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--c-eehHhhh
Confidence 11 1 247889999999999999999999999999888761 112233334567788887762 3 4444333
Q ss_pred CCcEEEEECCCCCCceEEe-cCCC-CeeEEEEEeC---CCcCEEEEEeCCCeEEEEECCC-CcEEEE
Q 002493 164 DRTIKIWNLGSPDPNFTLD-AHQK-GVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~-~~~~-~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-~~~~~~ 224 (915)
-+. .+++....+..+.=+ ..++ .-...+|.|. +..+.|+++--. .++|..+- |..+++
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKT 252 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEe
Confidence 333 345554333111111 1111 1245667665 345456665544 45554332 544443
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=6.5e-07 Score=98.71 Aligned_cols=182 Identities=14% Similarity=0.214 Sum_probs=140.5
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+..++.|+-...+..+|+.+.+..+......+.|.-+. .+++.+.+|...|+|.+-|.++.+.++++.+|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 44567777777888999999988887776666666555 4678999999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEEc---------CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE---CCC
Q 002493 107 VHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN---LGS 174 (915)
Q Consensus 107 ~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d---~~~ 174 (915)
. .|+.|++|+. |..|+|||++.-+.+. .+.-+.+ ..-+.|.|.-...+++++..|...+-| +.+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccC-chhhhhcccccceEEEEecccceeeccccccCC
Confidence 6 4788998875 5568999998763322 2222322 245778887788999999999999999 433
Q ss_pred CC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 175 PD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 175 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.. .++.+......+..++++++++ .++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeecC
Confidence 32 2333344555688999999888 7999999999999973
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.1e-06 Score=96.11 Aligned_cols=182 Identities=13% Similarity=0.180 Sum_probs=131.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.+.++|++++ +++|+.|+.+|.|++++.. +.. ++.-.|... ..+|.++++|+.||.|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 4567788887 6789999999999999964 333 333334433 66899999999999999999988887776
Q ss_pred EecCCCCEEEEEEcCC-----CCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 95 FEAHTDYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.- ..++.+++++|+ .+.+++|+..| +.++.-+ +. .....+....++|.++.|. +++++-++.+| |
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v 181 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-V 181 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEec---CcEEEEecCCC-c
Confidence 663 458999999997 45789999888 7776532 22 1222455667899999995 67888877665 8
Q ss_pred EEEECCCCCCceEEecCCCC------eeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002493 168 KIWNLGSPDPNFTLDAHQKG------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
++||+.+.+.+..+...... ...+.|.+... ++.| +..+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~---LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR---LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe---EEEe-cCCeEEEEEEe
Confidence 99999887766555433322 24577776543 5555 44578888776
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.62 E-value=3e-05 Score=78.96 Aligned_cols=211 Identities=11% Similarity=0.006 Sum_probs=133.7
Q ss_pred CCCeEEEEECCCCceeEEEecC--CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCC
Q 002493 77 DDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (915)
.+|+|..||..+|+.+...... .....+. ..+++.++++++.++.|..||..++...-..-....... .... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~---~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-APVV---D 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GEEE---E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-eeee---c
Confidence 3689999999999999888641 1222221 233566888889999999999998844333222111111 1112 3
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEE-ecCCC---CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc
Q 002493 155 TNTFASASLDRTIKIWNLGSPDPNFTL-DAHQK---GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 230 (915)
++.+++++.++.|..+|..+++..... ..... ..........++ .++++..++.|..+|.++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 567777778899999999999988874 32211 112222333344 688888899999999999999888765432
Q ss_pred C----------eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 231 N----------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 231 ~----------i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
. +..-....++ .++.++.+|.+..+|+.+++.+.... ...+.. .....+..|++++.++.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 2 1222223344 77777777764444999999665333 222222 245677888888888888774
No 322
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.9e-07 Score=91.52 Aligned_cols=161 Identities=11% Similarity=0.129 Sum_probs=118.8
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----eeEEEE
Q 002493 64 KFVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----WMCTQI 137 (915)
Q Consensus 64 ~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~ 137 (915)
+|+-+ |-. ++.+.+..|-+-|+.||-. ..|. .++.|.++.|...++++..|..+|.|..+|++.. ..+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56532 333 3344556788888888643 3333 4667999999999999999999999999999854 122233
Q ss_pred eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002493 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
+ -|.+.|+++..-..++..|.+.+.+|+|++||++.-+. +.++.+|-..-.-+-+.-+.....++++++|...+||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 2 37888999887655678899999999999999987666 6777777654444444444444589999999999999
Q ss_pred ECCCCcEEEEecCC
Q 002493 215 DYQTKSCVQTLEGH 228 (915)
Q Consensus 215 d~~~~~~~~~~~~~ 228 (915)
.++.|..+.++...
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999998887643
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=6.4e-06 Score=90.83 Aligned_cols=203 Identities=13% Similarity=0.252 Sum_probs=138.7
Q ss_pred EEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC------
Q 002493 22 DLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDM-----FIRVYNYNTM------ 89 (915)
Q Consensus 22 ~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~------ 89 (915)
+|++.+..++.|+.+|.|.+++ ++.+.++.+..+... |..+....+..+|++.+.|+ .|+||+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999999998 666677888888777 44444344446777766654 5999998632
Q ss_pred cee---EEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CC-eeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 90 DKV---KVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KG-WMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 90 ~~~---~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
.++ ..+. ..+.++.+++.|.+-+.+++|-.+|.|..+.-+ .. ............+|+.+.+.. ++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeE
Confidence 222 1121 235678999999999999999999999998532 11 122233334567899999987 555533
Q ss_pred EEECCCcEEEEECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCc
Q 002493 160 SASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHT 229 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 229 (915)
.......|.+|.+.+..+. ..+..+..+++|..+++.... +++++ +..+.+|+.....+...+. ++.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q--fIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ--FICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc--EEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 3334567999999755533 347778888999998876542 44444 3479999987655555555 443
No 324
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.59 E-value=1.7e-05 Score=76.95 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-------cCCCEEEEEEeCCC------CEEEEEeCCCeEEEE
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-------TELPVRSAKFVARK------QWVVAGADDMFIRVY 84 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~g~~dg~i~vw 84 (915)
=+.++||||+..||.+...|+|++||+... .+..+.. ....|..+.|.+.. ..|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 367999999999999999999999997653 3333332 12467777776532 246666778888877
Q ss_pred ECCC-----CceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCC
Q 002493 85 NYNT-----MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 85 d~~~-----~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (915)
-+.. .+..+.+. .+...|.++.++|..+.|++|+.... +.+ . -......+++-..-...+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-M----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-c----ccccccCceEEEEcCCCCc
Confidence 6532 23333433 34678999999999998888765322 000 0 0001111222111110111
Q ss_pred EE-EEEECCC------cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC
Q 002493 157 TF-ASASLDR------TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 157 ~l-~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (915)
+. ++...|+ +..+|.+-+.+...........|..|..+|+|. .|++...+|.|.+|++.+-+....+..
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcchhhcccch
Confidence 11 1111111 112333322221112233567899999999998 799999999999999988766655543
No 325
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=4.8e-05 Score=82.05 Aligned_cols=263 Identities=13% Similarity=0.170 Sum_probs=152.4
Q ss_pred cCCCCeEEEEE---------cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002493 24 HPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 24 sp~~~~la~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|++++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 78999888743 246799999999866544333 66788999999999999885 57899999877744332
Q ss_pred Ee-c-------C---------CCCEEEEEEcCCCCEEEEEEcC-C-----------------------------------
Q 002493 95 FE-A-------H---------TDYIRCVAVHPTLPYVLSSSDD-M----------------------------------- 121 (915)
Q Consensus 95 ~~-~-------~---------~~~i~~l~~s~~~~~l~~~~~d-g----------------------------------- 121 (915)
-. + - -+.-..+-||||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 21 1 0 1123568899999998865322 1
Q ss_pred eEEEEECCCCeeEE-EEe---ecCCccEEEEEEccCCCCEEEEEEC--CC---cEEEEECCCCCCceEEec-CCCC---e
Q 002493 122 LIKLWDWEKGWMCT-QIF---EGHSHYVMQVTFNPKDTNTFASASL--DR---TIKIWNLGSPDPNFTLDA-HQKG---V 188 (915)
Q Consensus 122 ~i~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~p~~~~~l~~~~~--dg---~i~i~d~~~~~~~~~~~~-~~~~---v 188 (915)
.+.++|+.++.... ... ......+..+.|.+ ++..|+..-. +. .+.++|..++........ ...- -
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 23444555442211 111 23456688999998 6663444333 22 366778877665433321 1222 2
Q ss_pred eEEEEE-eCCCcCEEEEEeCCCe--EEEEECCCCcEEEEecCCccCeEE-EEEeCCCCEEE-EEEcC----CcEEEEeCC
Q 002493 189 NCVDYF-TGGDKPYLITGSDDHT--AKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIII-TGSED----GTVRIWHAT 259 (915)
Q Consensus 189 ~~~~~~-~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~-~~~~d----g~v~iwd~~ 259 (915)
....+. +++.. ++.....+|. |.+++...+. ...+....-.|.. +.++++++.|. ++..+ ..|...++.
T Consensus 238 ~~~~~~~~~~~~-~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNE-FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSE-EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCE-EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 345554 55554 5656557765 5555655444 4455545556744 67888877555 44432 245555666
Q ss_pred CcceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002493 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 260 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~ 291 (915)
.+.....+......-..+.|||++++++..+.
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 23344444444333379999999999887654
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.7e-07 Score=90.48 Aligned_cols=151 Identities=20% Similarity=0.245 Sum_probs=116.9
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC-----CCceEEecCCCCee
Q 002493 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-----DPNFTLDAHQKGVN 189 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~ 189 (915)
++.+.+..|-+-|++++ ..+.+. ..+.|.++.|.. .++++..|+.+|.|..+|++.. .+...+ .|...|+
T Consensus 228 fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecc--cccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 44555677889999887 334444 567788899987 7899999999999999999765 233333 4888899
Q ss_pred EEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE---EEEecCCccCeEE--EEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002493 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSA--VCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~--i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
++......+. +|++.+.+|+|++||.+.-++ +.+..+|...-.- +-..+....+++++.|...|||.+..+.++
T Consensus 303 slq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9887763333 799999999999999998776 8888888654333 334566678899999999999999999999
Q ss_pred eeeecCC
Q 002493 265 NTLNYGL 271 (915)
Q Consensus 265 ~~~~~~~ 271 (915)
.++..+.
T Consensus 382 ~tipf~~ 388 (425)
T KOG2695|consen 382 CTIPFPY 388 (425)
T ss_pred eccCCCC
Confidence 8887653
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.49 E-value=0.00011 Score=82.93 Aligned_cols=262 Identities=12% Similarity=0.136 Sum_probs=155.8
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCC------CEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL------PVR--SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+..+.+++.+|.|.-.|..+|+.+..+..... .+. .+.. .++..++.++.+|.|.-+|.+||+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34567777789999999999988877654332 110 0111 12267888889999999999999998887643
Q ss_pred CCC-----EE-EEEEcCCCCEEEEEE---------cCCeEEEEECCCCeeEEEEeecCCc-------------------c
Q 002493 99 TDY-----IR-CVAVHPTLPYVLSSS---------DDMLIKLWDWEKGWMCTQIFEGHSH-------------------Y 144 (915)
Q Consensus 99 ~~~-----i~-~l~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~ 144 (915)
... +. +..+. +..+++++ .+|.+..+|..+++..-+.-..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 11222 24555554 3678999999988433322111110 0
Q ss_pred E-EEEEEccCCCCEEEEEECCC------------------cEEEEECCCCCCceEEecCCCCe------eEEEEEe----
Q 002493 145 V-MQVTFNPKDTNTFASASLDR------------------TIKIWNLGSPDPNFTLDAHQKGV------NCVDYFT---- 195 (915)
Q Consensus 145 v-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~v------~~~~~~~---- 195 (915)
+ .+..+.+ .+..+++++.++ .|.-+|..+++....+....... ....+..
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1233333 456777777665 79999999999887765321111 1111111
Q ss_pred CCC-cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE------------------EcCCcEEEE
Q 002493 196 GGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG------------------SEDGTVRIW 256 (915)
Q Consensus 196 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~------------------~~dg~v~iw 256 (915)
++. ..++++++.+|.+..+|.++|+.+....... ..++.+| ..+..+ ..+|.|.-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 121 1257888889999999999999987765221 1233444 223332 236789999
Q ss_pred eCCCcceeeeeecCCc--------cEEEEEEecCCCEEEEEecCCeEEE
Q 002493 257 HATTYRLENTLNYGLE--------RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
|..+|+.+........ +...-.....+..|++++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 9999998877665411 1111111224567777777777665
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00077 Score=70.13 Aligned_cols=245 Identities=10% Similarity=0.077 Sum_probs=119.4
Q ss_pred ECCCCceeEEEEecCCCEEEE-----EEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002493 43 NYQSQTMAKSFEVTELPVRSA-----KFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
|..+|..+..+.........+ +|.++|+.|+.++. ...+.+.|+.+++..+.-.+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 567777777776554433333 56788988777665 4478888999877665544322323357778988888
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEcc-CCCCEEEEEEC----------------------CCcEEEEE
Q 002493 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASL----------------------DRTIKIWN 171 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~~~~~----------------------dg~i~i~d 171 (915)
+-......|.-.|+++. +...++......+-...|.. .++..++-.-. ...|.-.|
T Consensus 96 ~Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTL-EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTTEEEEEETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCCeEEEEECCcC-cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76666678999999987 55566666666666667753 24444432211 13455567
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CC-eEEEEECCC-CcEEEEecCCcc--CeEEEEEeCCCCEE
Q 002493 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DH-TAKVWDYQT-KSCVQTLEGHTH--NVSAVCFHPELPII 244 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~--~i~~i~~~~~~~~l 244 (915)
+.+++....+. ...-+..+.|+|.... +|+-|-. +. .-+||-+++ +.....+..+.. .+.-=-|.|||..|
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 77766544443 4556778888887654 3444332 22 124554432 444444433322 23344589999866
Q ss_pred EEEE-----cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002493 245 ITGS-----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 245 ~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~d 292 (915)
.--+ .+..|.-+|+.+++....... .....+-.++||++++--+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 5432 233577778888765433222 244566677888877764443
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8e-06 Score=82.13 Aligned_cols=251 Identities=10% Similarity=0.100 Sum_probs=146.1
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 002493 4 RLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~g~~dg~i 81 (915)
.|+....+.+|...|+.++|||... ++..++.+..|.|.|+++...+.++..+ ..+.+++|.-|. .+|..|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3444556778889999999999877 6778888999999999999999988877 789999998765 567778889999
Q ss_pred EEEECCCCcee-EEEec--CCCCEEEEE------EcCCCCEEEEEEcCCeEEEEECCCCee-EEEEee-cCCccEEEEEE
Q 002493 82 RVYNYNTMDKV-KVFEA--HTDYIRCVA------VHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFE-GHSHYVMQVTF 150 (915)
Q Consensus 82 ~vwd~~~~~~~-~~~~~--~~~~i~~l~------~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~v~~~~~ 150 (915)
.|||+...+-. ..+.+ ...+|..++ ..+.+.+++..+.+ +..|.+..... ...+++ ...+...++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99999754321 11111 123344333 23344444444443 56676543211 111111 22445566666
Q ss_pred ccCCCCEEEEEECCC------cEEE-EECCCCCCceEEe-cCCC----Ce--eEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 151 NPKDTNTFASASLDR------TIKI-WNLGSPDPNFTLD-AHQK----GV--NCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg------~i~i-~d~~~~~~~~~~~-~~~~----~v--~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.+..+..+++.-.+. .|-. -|-..+.++...+ .+.+ ++ ....+.+..+..++.+|.+.+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 663333344332211 1111 1112232222111 1100 00 0111122222223445566789999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeC-CC-CEEEEEEcCCcEEEEeCC
Q 002493 217 QTKSCVQTLEGHTHNVSAVCFHP-EL-PIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~-~~-~~l~~~~~dg~v~iwd~~ 259 (915)
.+.+.++++.. ..+|..++... ++ .+|++-. |..++||...
T Consensus 419 ~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred chhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998874 47788777554 33 3555554 5588888643
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.3e-05 Score=78.98 Aligned_cols=253 Identities=11% Similarity=0.047 Sum_probs=149.2
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEE
Q 002493 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~ 116 (915)
|++.+..+.+....+..+...|+.++|+|... ++..++.+..|.|.|+.+...+..+..+ ..+++++|.-+. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555445455555666778899999999877 6788899999999999998888888887 789999998765 46778
Q ss_pred EEcCCeEEEEECCCCeeEEEEeec--CCccEEEEEEccC-----CCCEEEEEECCCcEEEEECCCC--CCceEEe-cCCC
Q 002493 117 SSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPK-----DTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQK 186 (915)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~ 186 (915)
|...|.|.+||++........+.+ ...+|..++.-+. .+.+++..+.+ +..|.+... .....+. ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 888999999999876444333322 2334444443320 23344444332 445655322 2222222 2244
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCe------EE-EEECCCCcEEEEec-CC-cc---C---eEEEEEeCCCCEEE-EEEcC
Q 002493 187 GVNCVDYFTGGDKPYLITGSDDHT------AK-VWDYQTKSCVQTLE-GH-TH---N---VSAVCFHPELPIII-TGSED 250 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~------i~-iwd~~~~~~~~~~~-~~-~~---~---i~~i~~~~~~~~l~-~~~~d 250 (915)
...++++.+..+. ++++.-.+.. |- -.|..+|.++...+ ++ .+ + -..+.-.++.++|+ +|...
T Consensus 332 ~cismqy~~~snh-~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNH-LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccce-EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4555666554443 3444333210 11 12223344433222 11 00 0 11122234445444 45566
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecC--CCEEEEEecCCeEEE
Q 002493 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKS--SRRIVIGYDEGTIMV 297 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~g~~dg~v~i 297 (915)
+.+.+||..+++.++++... .+|..++.... +.+|++-+++ .+.|
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~-~v~I 457 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD-RVHI 457 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecc-eEEE
Confidence 78999999999999998877 77887776543 3455554443 4444
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.39 E-value=0.00019 Score=80.88 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=145.5
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCC-----EE-EEEEeCCCCEEEEEe---------CCCeEEEEECCCCcee
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VR-SAKFVARKQWVVAGA---------DDMFIRVYNYNTMDKV 92 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~g~---------~dg~i~vwd~~~~~~~ 92 (915)
..+++++.+|.|.-+|.++|+.+..+...... +. +..+. +..+++++ .+|.+..+|..||+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56788888999999999999998877643321 11 11121 24555554 3678999999999988
Q ss_pred EEEecCCCC--------------------E-EEEEEcCCCCEEEEEEcCC------------------eEEEEECCCCee
Q 002493 93 KVFEAHTDY--------------------I-RCVAVHPTLPYVLSSSDDM------------------LIKLWDWEKGWM 133 (915)
Q Consensus 93 ~~~~~~~~~--------------------i-~~l~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 133 (915)
..+...... + ...++.+.+..+++++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 877542110 1 1234455566788887665 799999998844
Q ss_pred EEEEeec-CCc----cEEEEEEc---cCCC---CEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002493 134 CTQIFEG-HSH----YVMQVTFN---PKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 134 ~~~~~~~-~~~----~v~~~~~~---p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.-+.-.. |.. ......+. +.++ ..+++++.+|.+...|..+++.+....... ..+...| + .+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~--~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G--LV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c--eE
Confidence 3332111 211 00000111 1122 267788889999999999999887654221 1122222 1 23
Q ss_pred EEE------------------eCCCeEEEEECCCCcEEEEecCCc--------cCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002493 203 ITG------------------SDDHTAKVWDYQTKSCVQTLEGHT--------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 203 ~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
..+ ..+|.+.-.|..+|+.+.+..... .+...-.....+..|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 222 246789999999999887775431 111111111245688888999999999
Q ss_pred eCCCcceeeeeecC
Q 002493 257 HATTYRLENTLNYG 270 (915)
Q Consensus 257 d~~~~~~~~~~~~~ 270 (915)
|..+|+.+...+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 99999999887764
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.8e-06 Score=83.26 Aligned_cols=209 Identities=16% Similarity=0.123 Sum_probs=144.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCC
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT---MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKG 131 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~ 131 (915)
|...|+.+.- .-.+++.+++.||.++.|--.. -+.+..+..|...|.+++.+-++-.+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5555555443 3567899999999999997432 1334556688999999999999988888777 999999998865
Q ss_pred eeEEE-EeecCCccEEEEEEccCCC-CEEEE-EECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 132 WMCTQ-IFEGHSHYVMQVTFNPKDT-NTFAS-ASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 132 ~~~~~-~~~~~~~~v~~~~~~p~~~-~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
....- .+..-.+. .++..+|.+. ..+++ .-.++.+.++|-.... ....-.-|..+|.++.+.+.++ .+++..
T Consensus 87 DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSID 163 (558)
T ss_pred chhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeecc
Confidence 22211 11111221 1222233111 13333 3347889999976544 2233356889999999999998 588888
Q ss_pred CCCeEEEEECCC------CcE---------EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002493 207 DDHTAKVWDYQT------KSC---------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 207 ~dg~i~iwd~~~------~~~---------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
..|.|.-|.... ++. +..+.......+++.|+|+|..+.+-+.|..|++++..+|++++.+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 899999998762 111 11122234567899999999999999999999999999998766543
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.6e-06 Score=59.05 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=36.7
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
++++.++.+|.++|.+++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.35 E-value=0.0049 Score=68.30 Aligned_cols=257 Identities=12% Similarity=0.026 Sum_probs=147.4
Q ss_pred EEEEEcCCcEEEEECCCCceeEEEEecCC-------------CEE-------EEEE--------e-----CCCCEEEEEe
Q 002493 30 ILASLYSGTVCIWNYQSQTMAKSFEVTEL-------------PVR-------SAKF--------V-----ARKQWVVAGA 76 (915)
Q Consensus 30 la~~~~dg~v~iwd~~~~~~~~~~~~~~~-------------~v~-------~~~~--------~-----~~~~~l~~g~ 76 (915)
+.+|+.+|.|+|+-+.+++.++.+..... .|. .+.| | .||++|++-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 66788899999999999887776653211 111 0111 1 1567787776
Q ss_pred C-CCeEEEEECCCCceeEEEec-CCCCEEEEE-------------------EcCCCCEEEEE-EcCCeEEEEECCCCeeE
Q 002493 77 D-DMFIRVYNYNTMDKVKVFEA-HTDYIRCVA-------------------VHPTLPYVLSS-SDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 77 ~-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~-------------------~s~~~~~l~~~-~~dg~i~iwd~~~~~~~ 134 (915)
. +..|-..+++..++-+++.- ....+..+. ++|+|+.+... -..+.+.+.|.++....
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 56677777766655444431 122233333 34455433222 22356677777765333
Q ss_pred EEEeecCCccEEEEEEccCCCCEEEEEECC----CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002493 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLD----RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 135 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
.++..+. ....+.++| ++.++++.+.+ .++..-+.........+.. ..+ -.+.++|+ +... .++.
T Consensus 229 ~qV~Vdg--npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkdGK--~~~V--~gn~ 297 (635)
T PRK02888 229 WQVMVDG--NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKAGK--FKTI--GGSK 297 (635)
T ss_pred EEEEeCC--CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhCCC--EEEE--CCCE
Confidence 3333322 345677888 77777666532 1222222221111111110 000 02233454 3444 3678
Q ss_pred EEEEECCC-----CcEEEEecCCccCeEEEEEeCCCCEEEEEE-cCCcEEEEeCCCcce------------eeeeecCCc
Q 002493 211 AKVWDYQT-----KSCVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRL------------ENTLNYGLE 272 (915)
Q Consensus 211 i~iwd~~~-----~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~------------~~~~~~~~~ 272 (915)
|.++|.++ ...+..+. -......+.++|||+++++++ .+++|.++|+.+.+. ........+
T Consensus 298 V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 99999987 34455554 445678899999999877665 578999999987552 333443333
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEec
Q 002493 273 RVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~g~~dg~v~i~~ 299 (915)
....+|.++|+...+-.-|..+..|.
T Consensus 377 -PLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 377 -PLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred -cceEEECCCCCEEEeEeecceeEEEe
Confidence 34678899998888888888888774
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.9e-06 Score=58.74 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.7
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367888999999999999999999999999999999997
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.33 E-value=0.00082 Score=68.55 Aligned_cols=247 Identities=14% Similarity=0.159 Sum_probs=151.0
Q ss_pred EEEEEcCCCCeEEEEEc----------CCcEEEEECCCCceeEEEEecCC-C------EEEEEEeCCCCEEEEEeC--CC
Q 002493 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-P------VRSAKFVARKQWVVAGAD--DM 79 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~g~~--dg 79 (915)
-.+..||+++.++++.. ...|.+||..+-.....+....+ . ...++++.+++++++..- -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999998887642 33599999999888777665443 2 234678889998887643 56
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE----eecCCccEE-EEEEccCC
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI----FEGHSHYVM-QVTFNPKD 154 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~-~~~~~p~~ 154 (915)
.|.|.|+..++.+..+.... ...-.-+. ...+.+-+.||.+.-..++...+..+. |.....++. .-.+.. .
T Consensus 119 SVtVVDl~~~kvv~ei~~PG-C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG-CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS-EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred eEEEEECCCCceeeeecCCC-EEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence 89999999888888776432 12111122 245778888999998888733222221 222222222 233443 4
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceE--Eec----------CCCCeeEEEEEeCCCcCEEEE-EeCC-------CeEEEE
Q 002493 155 TNTFASASLDRTIKIWNLGSPDPNFT--LDA----------HQKGVNCVDYFTGGDKPYLIT-GSDD-------HTAKVW 214 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~----------~~~~v~~~~~~~~~~~~~l~~-~~~d-------g~i~iw 214 (915)
+..++.-+.+|.|+-.|+........ +.. ..++-.-+++++..+.-|++. .+.+ ..|.++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 55666678899999999876653221 110 123344566666555322221 1111 148888
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCcEEEEeCCCcceeeeeecC
Q 002493 215 DYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
|+.+++.+..+.. ..++.+|..+.+.+ +|++.+ .++.+.+||..+|+.+.++..-
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 9999999988873 34677999998765 665544 5789999999999998877643
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5e-05 Score=83.48 Aligned_cols=155 Identities=13% Similarity=0.149 Sum_probs=112.6
Q ss_pred cccCCCCEEEEEEcCC-------------CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC-----CCEE
Q 002493 11 LAQRSERVKSVDLHPS-------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-----KQWV 72 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~-------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 72 (915)
|..|.+.|.-..+.-. |.++++|+.||+|.|-.+-+.+...++. ...++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 4457776666555444 9999999999999999998888777766 4578999999998 5679
Q ss_pred EEEeCCCeEEEEECC--CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC-----ccE
Q 002493 73 VAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-----HYV 145 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v 145 (915)
++|+..| +.++.-+ ..+....+....++|.++.|. |++||-++++| |++||..++..+..+-..+. ...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fp 208 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFP 208 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCC
Confidence 9999988 7777532 112222455667899999997 67899888887 89999998755544433332 123
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECC
Q 002493 146 MQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (915)
..+.|.+ .+.++.| +..+|++..++
T Consensus 209 phl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 4677875 5566665 44578888876
No 338
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.28 E-value=0.0015 Score=68.03 Aligned_cols=272 Identities=12% Similarity=0.120 Sum_probs=136.6
Q ss_pred EEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002493 22 DLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 22 ~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+|.++|+.|+.++. ..++.+.|+.+++..+--.+.........++|+++.++-......|+-.|+.|.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57889988777665 456888899999776644432222335667898888876666678999999998877777777
Q ss_pred CCCEEEEEEc--CCCCEEEEEEc----------------------CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCC
Q 002493 99 TDYIRCVAVH--PTLPYVLSSSD----------------------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 99 ~~~i~~l~~s--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 154 (915)
.+.+-...|. .++..++-.-. ...|...|+.++ ....++. ....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEE-ESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEe-cCccccCcccCCCC
Confidence 7766666664 45555442211 234666677777 4444444 44667889999988
Q ss_pred CCEEEEEEC---CC-cEEEEECCCC-CCceEEecCC--CCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEE
Q 002493 155 TNTFASASL---DR-TIKIWNLGSP-DPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 155 ~~~l~~~~~---dg-~i~i~d~~~~-~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 224 (915)
+.+++.|.. +. .-+||-+++. .....+..+. ..+..=-|.|+|...+...... +..|.-+|..+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 888888765 22 1255655432 2222222222 2233344778877422222222 34577778888765433
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcCC----------------cEEEEeCCCcceeeeee---------cCCc-cEEEEE
Q 002493 225 LEGHTHNVSAVCFHPELPIIITGSEDG----------------TVRIWHATTYRLENTLN---------YGLE-RVWAIG 278 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~~l~~~~~dg----------------~v~iwd~~~~~~~~~~~---------~~~~-~v~~i~ 278 (915)
.. ......+-.++||++++-=+.|. -|+++++..++...... .+.. .=....
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 22 22345666788988776544432 35667776655321111 1100 124578
Q ss_pred EecCCCEEEEEec-CCeEEE
Q 002493 279 YMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 279 ~~~~~~~l~~g~~-dg~v~i 297 (915)
|+|||+.|+..++ .|...+
T Consensus 358 FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EE
T ss_pred cCCCCCEEEEECCCCCCccE
Confidence 9999988876554 344433
No 339
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.001 Score=72.98 Aligned_cols=135 Identities=16% Similarity=0.035 Sum_probs=86.7
Q ss_pred ccceeeeecccCCHHHHHHHHHHcCC-hhH---------------------------HHHHHHHHHHcCChhhHHHHHHH
Q 002493 642 PDYRFELAIQLGRLEVAQEIATEVQS-ESK---------------------------WKQLGELAMSTGKLEMAEGCMKQ 693 (915)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~a~~~~~-~~~---------------------------w~~la~~al~~~~~~~A~~~y~~ 693 (915)
-+.-|+.+|.|-+...|+-+|++.+- |.. -+.||..-+...-++.-.+.-.+
T Consensus 824 vn~~~~~aLsLyd~slalliaq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~ 903 (1243)
T COG5290 824 VNFFNEFALSLYDKSLALLIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICR 903 (1243)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 34445888888888888888875432 110 01111111111112222222233
Q ss_pred cCCcchhHHHHHhcCCHHHHH--HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHH
Q 002493 694 AMDLSGLLLLYSSLGDAEGIS--KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIV 771 (915)
Q Consensus 694 ~~d~~~l~~l~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~ 771 (915)
-.-|+.++.+|+--|..++.. --+.-....++++.|..+|...|++.||...|..+++|.++.-++..-.++.+...-
T Consensus 904 hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~A 983 (1243)
T COG5290 904 HDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLCA 983 (1243)
T ss_pred ccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHHH
Confidence 445677888888777655432 335666778889999999999999999999999999999999888777776655554
Q ss_pred HHHHH
Q 002493 772 AIWRK 776 (915)
Q Consensus 772 ~~~~~ 776 (915)
+....
T Consensus 984 E~L~S 988 (1243)
T COG5290 984 ELLPS 988 (1243)
T ss_pred Hhhhh
Confidence 44333
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.00058 Score=67.96 Aligned_cols=201 Identities=8% Similarity=0.117 Sum_probs=121.0
Q ss_pred hhcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002493 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~ 86 (915)
+.+.+-.+.+..++|+|+.. ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 44556666799999999866 4555566788888885 57888887754 356889999888877666656899999988
Q ss_pred CCCc------eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CeeEE-EEe------ecCCccE
Q 002493 87 NTMD------KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCT-QIF------EGHSHYV 145 (915)
Q Consensus 87 ~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~v 145 (915)
.... ....+. .++..+..++|+|.++.|+++-......+|.+.. ..... ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 112222 3455689999999988888888776667776654 11111 111 1123457
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCC---------CCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002493 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.++.++|..+++++.+..+..|..+| .++++...+.-.. ...-.|++.++|+ |.+.+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC---EEEEcCCceEEEe
Confidence 89999998888999999999999999 5666665554322 2456888988775 6666666666554
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=3.5e-07 Score=97.03 Aligned_cols=199 Identities=19% Similarity=0.258 Sum_probs=137.2
Q ss_pred CCCEEEEEEcCC--CCeEEEEEcCCcEEEEECCCCcee--EEEEecCCCEEEEEEeC-CCCEEEEEeC----CCeEEEEE
Q 002493 15 SERVKSVDLHPS--EPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVA-RKQWVVAGAD----DMFIRVYN 85 (915)
Q Consensus 15 ~~~v~~~~~sp~--~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~g~~----dg~i~vwd 85 (915)
...+.|++++-+ ...+++|..+|.|.+-..+...-- ....++..++++++|++ |.++||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 456888887664 457889999999999987654322 33456778999999998 5677888743 67899999
Q ss_pred CCCC--cee--EEEec-CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 86 YNTM--DKV--KVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 86 ~~~~--~~~--~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
+.++ .+. ..|.+ ......+++|..+.+.+++|.....+.++|++.. +.+...-.+..+..+...|-.++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCceec
Confidence 9876 221 12222 3345668999989999999999989999999843 122222233456677788866778877
Q ss_pred EECCCcEEEEE-CCCCC-CceEEec----CCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECC
Q 002493 161 ASLDRTIKIWN-LGSPD-PNFTLDA----HQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ 217 (915)
Q Consensus 161 ~~~dg~i~i~d-~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 217 (915)
.. ||.|.+|| ...-+ +...+.. ....+..++|+|...+ ++++.. +.++|+++|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 66 99999999 33322 2222221 2235889999998876 455544 55889999875
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.18 E-value=0.00077 Score=72.52 Aligned_cols=265 Identities=9% Similarity=0.082 Sum_probs=134.9
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------- 88 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~-------- 88 (915)
.|+.|.|+++..-|++|..+|.|.||.+...+... .....+-....+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998889999999999999875543221 000011111111110 00011111222211
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eec------CCccEEEEEEcc----CCC-
Q 002493 89 -MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEG------HSHYVMQVTFNP----KDT- 155 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~------~~~~v~~~~~~p----~~~- 155 (915)
..+...+....++|++++.|.-| ++++|..+|.+.|.|++....+... +.. ....++++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12233445568899999998555 9999999999999999887443331 112 234677888863 122
Q ss_pred --CEEEEEECCCcEEEEECCC---CCCce----EEecCCCCeeEEEEE-eCC------------------CcCEEEEEeC
Q 002493 156 --NTFASASLDRTIKIWNLGS---PDPNF----TLDAHQKGVNCVDYF-TGG------------------DKPYLITGSD 207 (915)
Q Consensus 156 --~~l~~~~~dg~i~i~d~~~---~~~~~----~~~~~~~~v~~~~~~-~~~------------------~~~~l~~~~~ 207 (915)
-.+++|+..|.+.+|.+.- +.... ....+..+|..+... .+. .-+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998741 11111 112345555555533 111 0112455556
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEe-----CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC----ccEEEEE
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----PELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIG 278 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~ 278 (915)
+..++++...+.+..............+++- ..+..|++-..+|.|++|.+-.-+.+..+..+. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7889999988777655544222233344452 355678888899999999999888777766542 2233455
Q ss_pred EecCCCEEEEEe
Q 002493 279 YMKSSRRIVIGY 290 (915)
Q Consensus 279 ~~~~~~~l~~g~ 290 (915)
++++|..++..+
T Consensus 314 is~~Gdi~~~~g 325 (395)
T PF08596_consen 314 ISRNGDIFYWTG 325 (395)
T ss_dssp E-TTS-EEEE-S
T ss_pred ECCCCCEEEEeC
Confidence 566666554443
No 343
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.0027 Score=69.40 Aligned_cols=211 Identities=10% Similarity=-0.019 Sum_probs=119.9
Q ss_pred EEEEcCCCCeEEEEEcC----------C-cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002493 20 SVDLHPSEPWILASLYS----------G-TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~d----------g-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
.++.+|.|..+|+...+ . .|+||+ ..|+.+.++.-..+.+.++.|+.+. .|++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 45677877777776543 1 599999 5677777777666899999998865 56666799999999986
Q ss_pred CceeEEE-------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc---------cEEE-EEEc
Q 002493 89 MDKVKVF-------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH---------YVMQ-VTFN 151 (915)
Q Consensus 89 ~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v~~-~~~~ 151 (915)
|+....+ .-....+....+..+| ++.-..++.+.+.+--......+.+..-.. .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 3331111 1111222233344455 333344555554432221111111100000 0000 1223
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-cc
Q 002493 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-TH 230 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 230 (915)
. +....+....++.+.+.+-...+. +. ..+++..++.||+++ +++.-..+|.+.+.+..-.+....+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 2 333444444445555443322111 11 246899999999988 7888888999999987766666665543 34
Q ss_pred CeEEEEEeCCCC
Q 002493 231 NVSAVCFHPELP 242 (915)
Q Consensus 231 ~i~~i~~~~~~~ 242 (915)
....+.|+.+..
T Consensus 261 ~p~~~~WCG~da 272 (410)
T PF04841_consen 261 PPKQMAWCGNDA 272 (410)
T ss_pred CCcEEEEECCCc
Confidence 566788877643
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.00077 Score=74.41 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=135.1
Q ss_pred CCCeEEEEEc-CCcEEEEECCCCceeEEEEec-CCCEEEEE-------------------EeCCCCEEEEEe-CCCeEEE
Q 002493 26 SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAK-------------------FVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 26 ~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~-------------------~~~~~~~l~~g~-~dg~i~v 83 (915)
||+||.+-.. ++.|..-++...+.-+.+... ...+..+. ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888888765 667777777766554444321 12222333 334555443222 2467778
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCeeEEEEeecCCccEEEEEEcc-------
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP------- 152 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p------- 152 (915)
.|..+.+....+.-.. ....++++|+|+++++.+.+ +++...+.... . ..+.|++
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----------d--~~vvfni~~iea~v 285 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----------D--WVVVFNIARIEEAV 285 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-----------c--eEEEEchHHHHHhh
Confidence 8888877776665322 45678999999999887632 22222222111 1 2233322
Q ss_pred CCCCEEEEEECCCcEEEEECCC----C-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE------
Q 002493 153 KDTNTFASASLDRTIKIWNLGS----P-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (915)
.+++.... .++.|.+.|..+ + .....+. -......+.++|+|+. +++++..+.+|.++|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 14555554 357899999987 3 3334443 4566789999999984 455556689999999987542
Q ss_pred ------EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002493 222 ------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 222 ------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+....--.+ ....+|.++|....+-.-|..|..|++.+
T Consensus 362 ~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333222 34578999998888888899999999875
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00017 Score=78.24 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=115.0
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEc---C-CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCC--eEE
Q 002493 10 KLAQRSERVKSVDLHPSEPWILASLY---S-GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDM--FIR 82 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~---d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~-~dg--~i~ 82 (915)
.+......+..-+|+|++..++.... . ..+.++++.++....... ..+.-..-+|+|||++|+... .|| .|.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 34445566778899999998775432 2 459999999887665554 344455679999999988664 455 566
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 159 (915)
++|+.++...+ +....+.-..-.|+|+|++|+..++ .| .|.+++++.+.....+.... . -..-.|+| +++.++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~-~~~p~~Sp-dG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-G-NSNPVWSP-DGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-C-CcCccCCC-CCCEEE
Confidence 66777666333 4433333446789999999886654 33 46777777763322222222 2 22778999 888887
Q ss_pred EEECC-Cc--EEEEECCCCCCceEEecCCCCeeEEEEEeCCC
Q 002493 160 SASLD-RT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD 198 (915)
Q Consensus 160 ~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (915)
..+.. |. |.+.|+.++.....+. .......-+|.+++.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 76643 44 6666666555433332 333334556666666
No 346
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.08 E-value=0.0085 Score=66.63 Aligned_cols=243 Identities=15% Similarity=0.117 Sum_probs=137.0
Q ss_pred CEEEEEEcCCCCeEEEEE-cCCc----EEEEECCCCceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC-----------C
Q 002493 17 RVKSVDLHPSEPWILASL-YSGT----VCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADD-----------M 79 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~-~dg~----v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~g~~d-----------g 79 (915)
.+..+++||+|+++|.+. ..|. ++++|+.+|+.+... .... -..+.|.++++.|+....+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344689999999999764 3444 999999999776532 2221 2239999998887766432 2
Q ss_pred eEEEEECCCCcee--EEEecCCC-C-EEEEEEcCCCCEEEEEEcC----CeEEEEECCCC----eeEEEEeecCCccEEE
Q 002493 80 FIRVYNYNTMDKV--KVFEAHTD-Y-IRCVAVHPTLPYVLSSSDD----MLIKLWDWEKG----WMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 80 ~i~vwd~~~~~~~--~~~~~~~~-~-i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~v~~ 147 (915)
.|..|.+.+.... ..+..... . ...+..++++++|++.+.. ..+.+.+...+ ...........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776543 45544333 2 6788999999998765432 34788888763 2333333333333333
Q ss_pred EEEccCCCCEEEEEEC---CCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC--eEEEEECCCC
Q 002493 148 VTFNPKDTNTFASASL---DRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTK 219 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 219 (915)
+... ++.+++.... .+.|...++..... ...+..+...+.-..+...++. +++....++ .|+++++..+
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-T
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCC
Confidence 4333 3444444332 45677778877663 2244455554444444445553 444444444 5888998834
Q ss_pred cEEEEecC-CccCeEEEEEeCCCCEEEE--EE--cCCcEEEEeCCCccee
Q 002493 220 SCVQTLEG-HTHNVSAVCFHPELPIIIT--GS--EDGTVRIWHATTYRLE 264 (915)
Q Consensus 220 ~~~~~~~~-~~~~i~~i~~~~~~~~l~~--~~--~dg~v~iwd~~~~~~~ 264 (915)
.....+.. ..+.|..+...++++.+.. .| .-+++.-||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444332 3344566665566553332 22 1246888888877643
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.05 E-value=0.0028 Score=68.24 Aligned_cols=229 Identities=11% Similarity=0.152 Sum_probs=119.5
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--------C
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--------K 130 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--------~ 130 (915)
.|+.+.|.++..-|++|...|.|.||.+...+... .....+-..+.+.+- ...++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876543322 000111111111110 0011111222322 2
Q ss_pred CeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec--------CCCCeeEEEEEe---CCC-
Q 002493 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--------HQKGVNCVDYFT---GGD- 198 (915)
Q Consensus 131 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~~~---~~~- 198 (915)
+......+....++|++++.+ +-.++++|..+|.+.|.|++.+..++.-.. ....++++.|.. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 334445555668899999998 578999999999999999988876655321 223577787763 232
Q ss_pred --cCEEEEEeCCCeEEEEECCC---CcE----EEEecCCccCeEEEE-EeCCC---------------------CEEEEE
Q 002493 199 --KPYLITGSDDHTAKVWDYQT---KSC----VQTLEGHTHNVSAVC-FHPEL---------------------PIIITG 247 (915)
Q Consensus 199 --~~~l~~~~~dg~i~iwd~~~---~~~----~~~~~~~~~~i~~i~-~~~~~---------------------~~l~~~ 247 (915)
...+++|...|.+.+|.+-- +.. ......+.++|..+. ++.+. .+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 24789999999999997741 221 111223556666555 32221 144444
Q ss_pred EcCCcEEEEeCCCcceeeeeecCCccEEEEEE-----ecCCCEEEEEecCCeEEEe
Q 002493 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGY-----MKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-----~~~~~~l~~g~~dg~v~i~ 298 (915)
+ +..++++...+.+.........-....+++ ...+..|++-..+|.++++
T Consensus 233 S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred c-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 4 668999998877765544422122333444 2345667777777777763
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00094 Score=71.88 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=81.3
Q ss_pred CCEEEEEEeCC-CCEEEEE----eCCCe----EEEEECCCCcee--EEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002493 58 LPVRSAKFVAR-KQWVVAG----ADDMF----IRVYNYNTMDKV--KVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 58 ~~v~~~~~~~~-~~~l~~g----~~dg~----i~vwd~~~~~~~--~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
....++.||.. ...+.+. +.+|. -++|++...+.. ... -.....+.|++++|+...++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 33467788763 3344443 23442 356666544322 111 146778999999999999999999999999
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCC
Q 002493 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
||...+ ... +....-..+.++|+| ++..+++|+..|.+.+||+.-+
T Consensus 286 yD~~~~-~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRG-VTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCC-eee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 998876 222 223445678999999 9999999999999999998644
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00013 Score=78.16 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=82.3
Q ss_pred EEEEEEcCCCC-eEEEE----EcCCc----EEEEECCCCceeEE--EE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 18 VKSVDLHPSEP-WILAS----LYSGT----VCIWNYQSQTMAKS--FE-VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 v~~~~~sp~~~-~la~~----~~dg~----v~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
..++.||-..+ .+.+. +.+|. -.+|++...+..+. .. .....|.|++++|+.++++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35666666333 33332 22343 45677655433221 11 3677899999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
..++... +....-.++.++|+|+|..+++|+..|.+.+||+.-+....+.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 8765332 2234556789999999999999999999999998765333333
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0011 Score=71.70 Aligned_cols=231 Identities=10% Similarity=0.089 Sum_probs=130.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEec----------------CCCEEEEEEeCCCCEEEEEeC
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVT----------------ELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~----------------~~~v~~~~~~~~~~~l~~g~~ 77 (915)
...+....|||+|+++|... ++.|.+++..++...+. ..+. -+.-..+-|||||++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45688899999999999886 68899999877744321 1120 012356889999999887532
Q ss_pred C-C-----------------------------------eEEEEECCCCceeEE--E---ecCCCCEEEEEEcCCCCEEEE
Q 002493 78 D-M-----------------------------------FIRVYNYNTMDKVKV--F---EAHTDYIRCVAVHPTLPYVLS 116 (915)
Q Consensus 78 d-g-----------------------------------~i~vwd~~~~~~~~~--~---~~~~~~i~~l~~s~~~~~l~~ 116 (915)
| . .+.|+|+.+++.... . ......+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 1 1 134455555543211 1 123445788999999884443
Q ss_pred E--EcC---CeEEEEECCCCeeEEEEeecCCccE---EEEEEc-cCCCCEEEEEECCCcEE--EEECCCCCCceEEecCC
Q 002493 117 S--SDD---MLIKLWDWEKGWMCTQIFEGHSHYV---MQVTFN-PKDTNTFASASLDRTIK--IWNLGSPDPNFTLDAHQ 185 (915)
Q Consensus 117 ~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-p~~~~~l~~~~~dg~i~--i~d~~~~~~~~~~~~~~ 185 (915)
. ..+ ..+.++|..++.............| ....|. +++..++.....+|--+ +++..++. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 3 222 3466778776533222222222222 244444 64666677777777644 45554443 33444445
Q ss_pred CCeeE-EEEEeCCCcCEEEEEeCC----CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002493 186 KGVNC-VDYFTGGDKPYLITGSDD----HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 186 ~~v~~-~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
-.|.. +.|.+.++. +.+++..+ ..|...++..+..+..+......-..+.|||++++++...
T Consensus 280 ~~V~~i~~~d~~~~~-iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNR-IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSE-EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCE-EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 55644 566666553 45555542 3566667763444555554433336899999999877654
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00045 Score=75.06 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=123.7
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe---CC-CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA---DD-MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~---~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
..+.+=|.. +...+.+......+..-+|+|+++.++..+ .. ..+.++++++++...... -.+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 345555543 555555555666788889999998876553 23 469999999887665554 222334578999999
Q ss_pred EEEEEE-cCCe--EEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE-ECCCc--EEEEECCCCCCceEEecCCC
Q 002493 113 YVLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA-SLDRT--IKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 113 ~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~ 186 (915)
+|+.++ .||. |+++|+.++. ..+ +....+.-..-.|+| +++.++.. +..|. |.+++...+.. ..+.....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~ 326 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG 326 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-cee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC
Confidence 887554 4554 6666777763 222 333333334677999 66665554 44454 66667666554 33333333
Q ss_pred CeeEEEEEeCCCcCEEEEEe-CCCe--EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002493 187 GVNCVDYFTGGDKPYLITGS-DDHT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
.-..-.|+|+|+. ++..+ .+|. |.+.|+.++..++.+. .......-+|.|++..++..+.
T Consensus 327 ~~~~p~~SpdG~~--i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 327 GNSNPVWSPDGDK--IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCcCccCCCCCCE--EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 3347789999984 54444 3454 6677776655444333 3333445678888876665443
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.0094 Score=65.27 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=105.9
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee--cCCccEEEE-----EEcc
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYVMQV-----TFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~-----~~~p 152 (915)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.++++|+... . ...+. .....|... .+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCC
Confidence 58899864 67777665444899999999865 5667778999999999754 2 11111 011122222 2221
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC-CceEEecCCC---------CeeE-EEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002493 153 KDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQK---------GVNC-VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
+| ++.-..++.+.+..-.... ....+..... .... ..++.+ ....+....++.+.+.+-...+.
T Consensus 138 -~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~--~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 138 -NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD--RVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred -CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC--cceEEEEecCCEEEEEEcccccc
Confidence 22 3333445555444322211 1111110000 0001 112222 22344444455555444322111
Q ss_pred EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-CccEEEEEEecCCC
Q 002493 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSR 284 (915)
Q Consensus 222 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~ 284 (915)
+. ..+++..++.||+|++++.-..+|.+.+.+..-.+....+... ......+.|+-+..
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 22 2468999999999999999999999999886655555555544 34567888876643
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00065 Score=74.06 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=101.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCC
Q 002493 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 177 (915)
+...|.--+++..+++++.|+.-|.+++|+-.++........+..+.+..+..++ +..+++.|+..|.|.++-++...+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4455666677788999999999999999998877555555545556667777887 788899999999999998876543
Q ss_pred ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCCccCeEEEEEeC
Q 002493 178 NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 178 ~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~i~~~~ 239 (915)
.... ..|...|++++|++++. .+.+|...|+|..-.+.+. ...+.+-...+.|..+....
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred CcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2211 23678899999999998 5999999999998887761 12233333455666665543
No 354
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.96 E-value=0.032 Score=57.29 Aligned_cols=253 Identities=10% Similarity=0.080 Sum_probs=155.6
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCC------
Q 002493 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMDKVKVFEAHTD------ 100 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~------ 100 (915)
+++.|+|..+++.+-.+...-. -.+..+|+++.+.+++. .-.|.+||..|......+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999988777664332 33667999999887532 34799999999988776542221
Q ss_pred -CEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECC-CCC
Q 002493 101 -YIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPD 176 (915)
Q Consensus 101 -~i~~l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~ 176 (915)
....++++.+++++++.. --..|.|.|+..++ ....+.. .+ |...-|..+..|.+-|.||++.-..+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 223468889999887664 35679999999883 3444332 22 222223345678899999999999887 454
Q ss_pred CceEEe----cCCCCe-eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE--EEEecCC----------ccCeEEEEEeC
Q 002493 177 PNFTLD----AHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGH----------THNVSAVCFHP 239 (915)
Q Consensus 177 ~~~~~~----~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~----------~~~i~~i~~~~ 239 (915)
...+.. ....++ ..-.+...+. .++-.+.+|.|+-.|+..... ...+... .+.-.-+++++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred EeEeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 432221 112222 2333333333 355577889999988875542 2222110 11233477887
Q ss_pred CCCEEEEEEc---CC-------cEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEE-ecCCeEEEec
Q 002493 240 ELPIIITGSE---DG-------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIG-YDEGTIMVKI 299 (915)
Q Consensus 240 ~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~g-~~dg~v~i~~ 299 (915)
..+.|.+--. +| .|-++|+.+++.+..+... ..+.+++.+.+.+ +|.+. ..++.+.++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6655554321 22 3888899999998888754 4677999998876 44433 3467787753
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.96 E-value=0.0059 Score=60.88 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=114.2
Q ss_pred EEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 002493 52 SFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (915)
Q Consensus 52 ~~~~~~~~v~~~~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~ 129 (915)
.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3444455699999999765 5556666888988886 47888777533 3568899998888766666568999999884
Q ss_pred CCe-----eEEEEe-----ecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC---CCCceEE--------ecCCCCe
Q 002493 130 KGW-----MCTQIF-----EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTL--------DAHQKGV 188 (915)
Q Consensus 130 ~~~-----~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~~~v 188 (915)
... ...+.+ ..++..+-.++|+| .++.|+++-...-..+|.+.. ....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 321 111111 12455689999999 556666666666666776654 2111111 1133456
Q ss_pred eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc---------cCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002493 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
..+.+.|.... +++....+..|..+| .+|+.+..+.-.. ...-.|+|.++|.+.+ .++-+..+.|
T Consensus 174 S~l~~~p~t~~-lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGH-LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTE-EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cceEEcCCCCe-EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 78899887654 677777889999999 5587766554222 2467899999986444 4566555544
No 356
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=4.2e-06 Score=89.05 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=129.0
Q ss_pred CCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeeE-EEEeecCCccEEEEEEccCCCCEEEEEEC----CCcEEEEE
Q 002493 99 TDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASL----DRTIKIWN 171 (915)
Q Consensus 99 ~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----dg~i~i~d 171 (915)
...+.|++++-+. ..+++|..+|.|.+-..+..... .....++..+.++++|++-|.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457777776543 47889999999999988754222 34556788899999999988888888743 56799999
Q ss_pred CCCC--CCc--eEEec-CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEE
Q 002493 172 LGSP--DPN--FTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIII 245 (915)
Q Consensus 172 ~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~ 245 (915)
+.+. .|. ..+.+ .....++++|..+.+ ++++|.....+.++|++.. +..........+..+...| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 222 12222 344566888874443 8999999999999999832 2111122234566778888 667777
Q ss_pred EEEcCCcEEEEe-CCCcc-eeeeeecC----CccEEEEEEecCCC--EEEEEecCCeEEEe
Q 002493 246 TGSEDGTVRIWH-ATTYR-LENTLNYG----LERVWAIGYMKSSR--RIVIGYDEGTIMVK 298 (915)
Q Consensus 246 ~~~~dg~v~iwd-~~~~~-~~~~~~~~----~~~v~~i~~~~~~~--~l~~g~~dg~v~i~ 298 (915)
+.. ||.|.+|| ..+-+ ++..+... ...+..++|+|... ..+..-+.++|+..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 765 99999999 33222 22222222 23589999999743 33334445566653
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.88 E-value=0.013 Score=60.91 Aligned_cols=227 Identities=12% Similarity=0.164 Sum_probs=132.7
Q ss_pred CCCCeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------
Q 002493 25 PSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-------- 95 (915)
Q Consensus 25 p~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-------- 95 (915)
..++.|++|+.+| +.+++... ....+.. +..+|..+...|+-+.|++-+ |+.+.++++.+.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999888 99999833 2332222 333499999999888877765 499999998765443311
Q ss_pred ------ecCCCCEEEEE--EcCCCCEEEEEEcCCeEEEEECCCCe----eEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 96 ------EAHTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 96 ------~~~~~~i~~l~--~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
-.....+...+ -...+...++......|.+|.+.... ...+.+. -...+.+++|. ++.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEeC
Confidence 01222344444 12233344444445589999887531 1222222 34678899997 467777775
Q ss_pred CCcEEEEECCCCCCceEEecCC------------CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE--EecCCc
Q 002493 164 DRTIKIWNLGSPDPNFTLDAHQ------------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHT 229 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 229 (915)
+ ...+.|+.++.....+.... .++..+... ++ .+|++ . +..-.+.|. .|++.+ .+.- .
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN--EFLLC-Y-DNIGVFVNK-NGEPSRKSTIQW-S 228 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc--eEEEE-e-cceEEEEcC-CCCcCcccEEEc-C
Confidence 4 47788998766543332111 223333332 22 24543 3 233333443 354333 2221 2
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002493 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
....++++.. ++|++.+. +.|.||++.++++++++...
T Consensus 229 ~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3455666643 57777665 46999999999999888755
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.87 E-value=0.0056 Score=65.25 Aligned_cols=213 Identities=14% Similarity=0.194 Sum_probs=124.5
Q ss_pred CeEEEEECCCCceeEEEecC-CCCEEEE---EEcCC----CCEEEEEEc---------C-CeEEEEECCCC----eeEEE
Q 002493 79 MFIRVYNYNTMDKVKVFEAH-TDYIRCV---AVHPT----LPYVLSSSD---------D-MLIKLWDWEKG----WMCTQ 136 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~~~~-~~~i~~l---~~s~~----~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 136 (915)
+.|++.|..+.+.+..+.-. ...+.++ .+..+ .++|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888888888877665422 2334444 34432 467887754 2 89999999883 12222
Q ss_pred -EeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002493 137 -IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 137 -~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
......++|++++-. ++. ++++. .+.|.+|++...+..........++...+....++ ++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEE
Confidence 223457889888876 344 44444 58899999988773333333333334444444455 899999888888885
Q ss_pred CCC-CcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC-------c--ceeeeeecC-CccEEEE---EE
Q 002493 216 YQT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-------Y--RLENTLNYG-LERVWAI---GY 279 (915)
Q Consensus 216 ~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~-------~--~~~~~~~~~-~~~v~~i---~~ 279 (915)
++. +..+..+. .....++++.+-+++..++++..+|.+.++.... + ++......+ ...|+++ ++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 543 33233332 2345688888987767999999999999997652 1 222222222 2456666 44
Q ss_pred ecC--CC------EEEEEecCCeEEE
Q 002493 280 MKS--SR------RIVIGYDEGTIMV 297 (915)
Q Consensus 280 ~~~--~~------~l~~g~~dg~v~i 297 (915)
.|. +. .++.++.+|.+..
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 441 21 3777888888874
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.031 Score=60.85 Aligned_cols=261 Identities=15% Similarity=0.101 Sum_probs=165.0
Q ss_pred CEEEEEEcCCCCeEEEEEcC-CcEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeE
Q 002493 17 RVKSVDLHPSEPWILASLYS-GTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~d-g~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~ 93 (915)
....+...|++..+.+.... ..+.+.+.. ...... .......-..++.++.+..+.+. ..++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 45667888888655554432 245555543 222221 11111334577888888855544 456899999988777766
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEE-EEECCCcEEE
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKI 169 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i 169 (915)
....-. ....++++|+++.+.++.. ++++.+.|..++..... ......+ ..++++| +++.++ +-..++.|.+
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSV 186 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCc-ceEEECC-CCCeEEEEecCCCeEEE
Confidence 665333 6678999999988887765 68899999888844444 3333233 8899999 666554 4447899999
Q ss_pred EECCCCCCce-E---EecCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCE
Q 002493 170 WNLGSPDPNF-T---LDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPI 243 (915)
Q Consensus 170 ~d~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~ 243 (915)
.|..+..... . ..........+.+.+++..-|+..... ++.+...|..++........-.. ....+..+|+|..
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 9976654332 0 111223346788899888522222222 26899999888776654221111 4567899999998
Q ss_pred EEEEEc-CCcEEEEeCCCcceeeeeecCCc---cEEEEEEecC
Q 002493 244 IITGSE-DGTVRIWHATTYRLENTLNYGLE---RVWAIGYMKS 282 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~ 282 (915)
+.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888744 47899999888777666554422 3445555443
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.052 Score=59.10 Aligned_cols=252 Identities=17% Similarity=0.173 Sum_probs=160.6
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCCCEEEE
Q 002493 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~ 116 (915)
+.+++..+......+..+. ....+...+++..+.+... ...+...+.. ...+... .........++.++.++.+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666665555555554343 4566788888865555433 2345555554 2222222 211144567889998886555
Q ss_pred EE-cCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC---CCcEEEEECCCCCCceEEecCCCCeeEEE
Q 002493 117 SS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (915)
Q Consensus 117 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 192 (915)
.. .++.|.+.|..+.........+. ....++++| ++..+.++.. ++++.+.|..+.+..........+ ..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 44 45899999987764444444443 567889999 5555554444 689999999888877775544444 8899
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEE-E---ecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCcceee
Q 002493 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-T---LEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~ 265 (915)
+.|++.. .+++-..++.|.+.|..+..... . ..........+.++|+|..+.+.... +.+...|..++....
T Consensus 167 ~~p~g~~-vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNK-VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCe-EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999885 34444578999999977655442 1 01122334678999999966655443 589999988877665
Q ss_pred e-eecCCccEEEEEEecCCCEEEEEecC-CeEEE
Q 002493 266 T-LNYGLERVWAIGYMKSSRRIVIGYDE-GTIMV 297 (915)
Q Consensus 266 ~-~~~~~~~v~~i~~~~~~~~l~~g~~d-g~v~i 297 (915)
. ..........+..+|+|..+.+.... +.+.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 4 22221145678999999988887444 55554
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.76 E-value=0.018 Score=65.19 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=138.6
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceeEEEec
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~ 97 (915)
..+++++.++.|.-.|..+|+.+........ .+.+--..-++ .+++++. +|.|.-+|.+||+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4577778899999999999998877653211 11111111133 5555543 68999999999998876542
Q ss_pred CCC-------------------------------CE-EEEEEcCCCCEEEEEEcC-----C-----------eEEEEECC
Q 002493 98 HTD-------------------------------YI-RCVAVHPTLPYVLSSSDD-----M-----------LIKLWDWE 129 (915)
Q Consensus 98 ~~~-------------------------------~i-~~l~~s~~~~~l~~~~~d-----g-----------~i~iwd~~ 129 (915)
-.. .+ ..+++.|...+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 11 134666666677766522 2 57777888
Q ss_pred CCeeEEEEeecCCccE---------EEEEEccCCCC---EEEEEECCCcEEEEECCCCCCceE--------E----ecCC
Q 002493 130 KGWMCTQIFEGHSHYV---------MQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFT--------L----DAHQ 185 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~v---------~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~--------~----~~~~ 185 (915)
++ +..-.+....+.+ .-+.... ++. .++.++.+|.+.+.|-.+++++.. . ....
T Consensus 280 TG-~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TG-KIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cC-CEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 87 3333333221211 1122212 443 778899999999999998886421 1 0000
Q ss_pred -CCe----------------------------eEEEEEeCCCcCEEEEEe------------------------------
Q 002493 186 -KGV----------------------------NCVDYFTGGDKPYLITGS------------------------------ 206 (915)
Q Consensus 186 -~~v----------------------------~~~~~~~~~~~~~l~~~~------------------------------ 206 (915)
.++ ..++++|... ++++..
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g--~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTG--LFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCC--EEEEecccccccccccccccCCCCceeccccccCCC
Confidence 000 0133333222 222211
Q ss_pred ---CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002493 207 ---DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 207 ---~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.-|.|.-+|+.+++.............+. +.-.+.+++.++.+|.++.+|..+|+.+...+..
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 12568888999998887765322222222 2224457778888999999999999999888765
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.1 Score=59.23 Aligned_cols=190 Identities=9% Similarity=0.040 Sum_probs=115.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEE---E-------EEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002493 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIR---C-------VAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~---~-------l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
+..+++++.++.|.-+|..||+.+..+.... ..+. + +++ .+..++.++.|+.|.-.|.++++.+-+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577788888899999999999888775321 1111 1 122 2346788888999999999988544332
Q ss_pred eec-CC--ccEEE-EEEccCCCCEEEEEEC------CCcEEEEECCCCCCceEEecCCCC--------------------
Q 002493 138 FEG-HS--HYVMQ-VTFNPKDTNTFASASL------DRTIKIWNLGSPDPNFTLDAHQKG-------------------- 187 (915)
Q Consensus 138 ~~~-~~--~~v~~-~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 187 (915)
-.. +. ..+.+ .... ++ .+++++. +|.|..+|..+++.+.++......
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 211 11 01111 1111 23 4555442 688999999999877665322110
Q ss_pred -----------e-eEEEEEeCCCcCEEEEEeCC-----C-----------eEEEEECCCCcEEEEecCCccCeE------
Q 002493 188 -----------V-NCVDYFTGGDKPYLITGSDD-----H-----------TAKVWDYQTKSCVQTLEGHTHNVS------ 233 (915)
Q Consensus 188 -----------v-~~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~------ 233 (915)
+ ..+.+.+..+ ++..+..+ + .|.-.|.++|+....++...+.++
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~--lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETN--LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCccccCCCCccCceeEcCCCC--eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence 1 0223333333 45544421 2 677789999998887765333222
Q ss_pred ---EEEEeCCCC---EEEEEEcCCcEEEEeCCCcceee
Q 002493 234 ---AVCFHPELP---IIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 234 ---~i~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
-+.+..+|+ .++.+..+|.+.+.|..+|+.+.
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 222334665 78899999999999999998764
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.70 E-value=0.055 Score=56.29 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=85.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe--------
Q 002493 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-------- 225 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 225 (915)
.++.|+.|+.+| +.++++.......... +...|..+...+.-+ .+++- .|+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~--~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN--LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC--EEEEE-cCCccEEEEchhhcccccccccccccc
Confidence 578899999888 8999983333222222 333488998888766 34444 3599999998764432210
Q ss_pred ------cCCccCeEEEE--EeCCC-CEEEEEEcCCcEEEEeCCCc-----ceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002493 226 ------EGHTHNVSAVC--FHPEL-PIIITGSEDGTVRIWHATTY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 226 ------~~~~~~i~~i~--~~~~~-~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~ 291 (915)
......+...+ -.+.+ ..|+++ ....|.+|..... +....+..+ ..+.+++|. ++.+++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC
Confidence 11223344444 11233 344444 4558888876542 455566555 678899998 678889988
Q ss_pred CCeEEEecC
Q 002493 292 EGTIMVKIG 300 (915)
Q Consensus 292 dg~v~i~~~ 300 (915)
++...+.+.
T Consensus 157 ~~f~~idl~ 165 (275)
T PF00780_consen 157 KGFYLIDLN 165 (275)
T ss_pred CceEEEecC
Confidence 887777543
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00019 Score=77.10 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=77.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
...|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|+.+++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568899999999999999999999999987 777888887887887 99999999999999999999999999987766
Q ss_pred EEe-cCCCCEEEEEEc
Q 002493 94 VFE-AHTDYIRCVAVH 108 (915)
Q Consensus 94 ~~~-~~~~~i~~l~~s 108 (915)
.+. .-...|.++-|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 532 223455666665
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.67 E-value=0.032 Score=59.50 Aligned_cols=211 Identities=15% Similarity=0.257 Sum_probs=127.9
Q ss_pred CcEEEEECCCCceeEEEEecC-CCEEEEEE---eC----CCCEEEEEeC---------C-CeEEEEECCCC----ceeEE
Q 002493 37 GTVCIWNYQSQTMAKSFEVTE-LPVRSAKF---VA----RKQWVVAGAD---------D-MFIRVYNYNTM----DKVKV 94 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~---~~----~~~~l~~g~~---------d-g~i~vwd~~~~----~~~~~ 94 (915)
+.|++.|..+.+.+.++.... ..+.+++. .. ...+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888887766533 23444433 32 2578888854 2 89999999884 23322
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-eEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEE
Q 002493 95 F--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 95 ~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
+ ....++|++++-- +.+|+++. .+.|.+|++.... ............+.++... ++++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 2 2457889998876 33455554 4789999998875 3333333344567777775 46999999989988875
Q ss_pred CCCC-CCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-------Cc--E--EEEecCCccCeEEE--
Q 002493 172 LGSP-DPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KS--C--VQTLEGHTHNVSAV-- 235 (915)
Q Consensus 172 ~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~~~~~i~~i-- 235 (915)
.+.. .....+ ......+.++.+.++++ .++++..+|.+.++.... +. . ...+. ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence 5432 222222 23345577888886764 799999999999998752 22 2 22222 23456666
Q ss_pred -EEeCC--C------CEEEEEEcCCcEEEE
Q 002493 236 -CFHPE--L------PIIITGSEDGTVRIW 256 (915)
Q Consensus 236 -~~~~~--~------~~l~~~~~dg~v~iw 256 (915)
++.|. + +.++.++.+|.|...
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 44441 2 147777888888743
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00029 Score=75.70 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=77.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE-EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+.-+.|+|.-..||++..+|.|.+..++ .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 788899987777777 99999999999999999999999999884444
Q ss_pred EEeecCCccEEEEEEc
Q 002493 136 QIFEGHSHYVMQVTFN 151 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~ 151 (915)
.........|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 4323334445555554
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.59 E-value=0.0082 Score=69.23 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=100.2
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCC-----cCEEEEEeCCCeEEEEECCCCc--EEEE-
Q 002493 154 DTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKS--CVQT- 224 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~- 224 (915)
+.++|+... ....|+-.|+..|+.+..+..+... ....+.|+.+ ..-.+.|-++..+..||.|-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 445555443 4578999999999999998877654 2344445321 1136778888999999998632 2221
Q ss_pred ec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcce-eeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 225 LE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 225 ~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
.. ......+|++-+.+| +||+|+.+|.||+||- .|+. ...+.+-..+|..|..+.||++|++.+..-.+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 10 134467888888887 7999999999999994 4443 33444546899999999999999998887777663
No 368
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.57 E-value=0.035 Score=59.61 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred EEEEcCCCCeEEEEEcCCcEEE---EECCC-C----ceeEEEEe---cC--CCEEEEEEeC-----------CCCEEEEE
Q 002493 20 SVDLHPSEPWILASLYSGTVCI---WNYQS-Q----TMAKSFEV---TE--LPVRSAKFVA-----------RKQWVVAG 75 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~i---wd~~~-~----~~~~~~~~---~~--~~v~~~~~~~-----------~~~~l~~g 75 (915)
.++.+|++..||.+..+..+.+ |+... + .......+ ++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987665555 53311 1 12222221 11 4677777654 35689999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC
Q 002493 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 109 (915)
..+|.|++|.. +|..+..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 5666655556788888887753
No 369
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.54 E-value=0.29 Score=56.39 Aligned_cols=455 Identities=13% Similarity=0.130 Sum_probs=212.8
Q ss_pred CCEEEEEEcCC----CCeEEEEEc---CCcEEEEECCCCc-eeEE--EEecCCCEEEEE--EeCC-CCEEEEEeCCCeEE
Q 002493 16 ERVKSVDLHPS----EPWILASLY---SGTVCIWNYQSQT-MAKS--FEVTELPVRSAK--FVAR-KQWVVAGADDMFIR 82 (915)
Q Consensus 16 ~~v~~~~~sp~----~~~la~~~~---dg~v~iwd~~~~~-~~~~--~~~~~~~v~~~~--~~~~-~~~l~~g~~dg~i~ 82 (915)
++|..+..-.. ++.+++++. ||+++|....-+- .... +.+ -..+..+. +.++ ..+|+.+-.+- -+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e-Tr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE-TR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc-eE
Confidence 47777776542 245666543 8999998643221 1111 222 23345555 3332 12555554433 34
Q ss_pred EEECCCCceeE-EEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 83 VYNYNTMDKVK-VFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 83 vwd~~~~~~~~-~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
+..+.. +... ...+-......+..|. .++.|+=.+. ..|++++-. + ....+... ..++....+- +...++.
T Consensus 432 vl~i~~-e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~--~~~~W~~p-~~~ti~~~~~-n~sqVvv 504 (1096)
T KOG1897|consen 432 VLNISE-EVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-G--LRSEWRPP-GKITIGVVSA-NASQVVV 504 (1096)
T ss_pred EEEEcc-ceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch-h--hhhcccCC-CceEEEEEee-cceEEEE
Confidence 444432 2111 1112222233333332 2333333332 246666543 1 11222222 2223322322 4556777
Q ss_pred EECCCcEEEEECCCCCCceE-EecCCCCeeEEEEEeCCCc----CEEEEEeCCCeEEEEECC-CCcEEEEe--cC--Ccc
Q 002493 161 ASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDK----PYLITGSDDHTAKVWDYQ-TKSCVQTL--EG--HTH 230 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~-~~~~~~~~--~~--~~~ 230 (915)
++.++.+...++..+..... -......|.|+.++|-++. +++++|.++..+.+.-.- +...+... .+ -..
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 77777777777655441111 1234567899999986543 268888887766655433 23222221 11 123
Q ss_pred CeEEEEEeCCCCEEEEEEcCCcEEEE--eCCCcceeeee--ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcc--
Q 002493 231 NVSAVCFHPELPIIITGSEDGTVRIW--HATTYRLENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP-- 304 (915)
Q Consensus 231 ~i~~i~~~~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~-- 304 (915)
.|.-.++-.|..+|.++..||.+.-| |..++..-..- ..+..++.=-.|+..++.-+.+..|.-..++..+..-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 35555666667899999999998765 44555433222 2233444444455444443333333333332211110
Q ss_pred ----------eeEecC---CCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002493 305 ----------VASMDN---SGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 305 ----------~~~~~~---~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
+..+.. ...++....+.+....+..... + ..+. -.....++.+++.+...++.+.
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk---------l--~irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK---------L--HIRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhh---------c--ceee-ecCCCChhheEecccceEEEEE
Confidence 011110 1112222333333333222111 0 0111 1122356788888866666666
Q ss_pred cC------C---------cEEEEEeeccc---------ccCccceeEEEEecC-CcEEEEec-----------CCeEEEe
Q 002493 372 GD------G---------EYIIYTALAWR---------NRSFGSALEFVWSSD-GEYAVRES-----------SSKIKIF 415 (915)
Q Consensus 372 ~~------~---------~~~i~~~~~~~---------~~~~~~~~~~~~s~~-~~~l~~~~-----------~~~v~v~ 415 (915)
++ + .+.+|+..+.+ ....-++.+..|..| +.|++++. .|.|.||
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 42 1 12233322222 111224455557766 56666553 1455565
Q ss_pred ccCc-cceeeee---cCcccc--eeecCcEEEEeeCCeEEEEeccCCcEEEEE---EccccEEEEcCCCCEEEEEeCC-e
Q 002493 416 SKNF-QEKRSVR---PTFSAE--RIYGGTLLAMCSNDFICFYDWAECRLIRRI---DVTVKNLYWADSGDLVAIASDT-S 485 (915)
Q Consensus 416 ~~~~-~~~~~~~---~~~s~~--~i~~g~~La~~~~~~v~~~d~~~~~~i~~~---~~~i~~v~~s~dg~~la~~~~~-~ 485 (915)
.... +....+. ..-++- ..+.|++||. -+..|++|+|.+.+.++.- ..++..+...-.|+.+++++-- +
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~-In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVEFNGKLLAG-INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhhhCCeEEEe-cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 4322 1111110 001111 1124555554 3448999999998666542 2477888888889999998744 3
Q ss_pred EEEEEec
Q 002493 486 FYILKYN 492 (915)
Q Consensus 486 ~~~~~~~ 492 (915)
+.++.|.
T Consensus 892 itll~y~ 898 (1096)
T KOG1897|consen 892 ITLLQYK 898 (1096)
T ss_pred EEEEEEe
Confidence 4455543
No 370
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.16 Score=56.79 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=77.7
Q ss_pred ecccCCHHHHHHHHHHcCCh-----hHHHHHHHHHHHcC---ChhhHHHHHHHcCC--cchhHHHHHhcCCHHHHHHHHH
Q 002493 649 AIQLGRLEVAQEIATEVQSE-----SKWKQLGELAMSTG---KLEMAEGCMKQAMD--LSGLLLLYSSLGDAEGISKLAS 718 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~~~~-----~~w~~la~~al~~~---~~~~A~~~y~~~~d--~~~l~~l~~~~~~~~~~~~l~~ 718 (915)
.+..+.+..|.++|+.+.-+ ....++|....++. +-+.+.+.=.|.++ ..++. ...+|+
T Consensus 447 l~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS-----------y~~iA~ 515 (829)
T KOG2280|consen 447 LVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS-----------YAAIAR 515 (829)
T ss_pred HHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee-----------HHHHHH
Confidence 34667888999998866543 35667787777763 34444444444444 33332 356788
Q ss_pred HHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-chHHHHHHHHHHhhh
Q 002493 719 LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIVAIWRKDLQ 779 (915)
Q Consensus 719 ~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~-~~~~~~~~~~~~~L~ 779 (915)
.|...|...+|.....+--+-.+-+.+++++++.+.|+.=|..-+. +.+-.++-.-++.+.
T Consensus 516 ~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~ 577 (829)
T KOG2280|consen 516 RAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN 577 (829)
T ss_pred HHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 8888888888888877777777777888888888888855544443 555555544444444
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.46 E-value=0.18 Score=52.01 Aligned_cols=270 Identities=9% Similarity=0.061 Sum_probs=123.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC----CccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
..++..|.|.....-+++| ..+.| +-..+.+.......... .....++.|.. ...+++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence 4578999999555555555 45544 33334442222222111 23466777764 4455554 445 34444455
Q ss_pred CCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002493 175 PDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 175 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
++.=..+. ........+....++ .....+..|.|..= .+.|+. ..........+..+..+++|+++++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 55433332 112233344443333 24444455554332 222332 23334455778899999999988888766
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeec
Q 002493 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
..+.-||.-...-...-.....+|.++.|+|++....++ ..|.+++-. ..+..--|.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~---------~~~~~~~w~------------- 222 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD---------DPDDGETWS------------- 222 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----------TTEEEEE--------------
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc---------CCCCccccc-------------
Confidence 556677743211111122245789999999997765544 777777621 000000000
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEee---cccc-----cCccceeEEEEecCCc
Q 002493 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTAL---AWRN-----RSFGSALEFVWSSDGE 402 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~---~~~~-----~~~~~~~~~~~s~~~~ 402 (915)
....++......+-.+++.+++...|+++.|.+.. +.. .|+. ........+.|.++.+
T Consensus 223 -------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 223 -------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp ---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred -------------cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 00111112233356889999999999988886554 322 2221 1234567777777767
Q ss_pred EEEEecCCeEEEe
Q 002493 403 YAVRESSSKIKIF 415 (915)
Q Consensus 403 ~l~~~~~~~v~v~ 415 (915)
-++.+.+|.+--|
T Consensus 289 gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE-STTEEEEE
T ss_pred eEEECCCcEEEEe
Confidence 7777777765443
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.18 Score=56.04 Aligned_cols=222 Identities=13% Similarity=0.109 Sum_probs=117.4
Q ss_pred EEEEEEeCCCCEEEEE-eCCC----eEEEEECCCCceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCC-----------e
Q 002493 60 VRSAKFVARKQWVVAG-ADDM----FIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDM-----------L 122 (915)
Q Consensus 60 v~~~~~~~~~~~l~~g-~~dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg-----------~ 122 (915)
+....++|+|++++.+ +..| .|+++|+.+++.+... .. . ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3357889999999876 3333 6999999999776532 22 1 123499999988776554332 3
Q ss_pred EEEEECCCCeeE-EEEeecCCcc--EEEEEEccCCCCEEEEEECC----CcEEEEECCCC----CCceEEecCCCCeeEE
Q 002493 123 IKLWDWEKGWMC-TQIFEGHSHY--VMQVTFNPKDTNTFASASLD----RTIKIWNLGSP----DPNFTLDAHQKGVNCV 191 (915)
Q Consensus 123 i~iwd~~~~~~~-~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~~ 191 (915)
|+.|.+.+.... ..++...... ...+..++ ++++++..+.. ..+.+.++..+ .....+......+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 788888765322 3444443332 56788888 77776654332 34777788764 2333444344444333
Q ss_pred EEEeCCCcCEEEEE--eCCCeEEEEECCCCc---EEEEecCCcc--CeEEEEEeCCCCEEEEEEcCC--cEEEEeCCCcc
Q 002493 192 DYFTGGDKPYLITG--SDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDG--TVRIWHATTYR 262 (915)
Q Consensus 192 ~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~---~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~ 262 (915)
.-+. ++.-++.+. ...+.|...++.+.. ....+..+.. .+..+....+ .+++....++ .|+++++..+.
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCc
Confidence 3233 332123332 234677777887654 2324444444 3555554433 2444444554 48888987333
Q ss_pred eeeeeec-CCccEEEEEEecCCCEE
Q 002493 263 LENTLNY-GLERVWAIGYMKSSRRI 286 (915)
Q Consensus 263 ~~~~~~~-~~~~v~~i~~~~~~~~l 286 (915)
....+.. ..+.|..+...++++.+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEE
Confidence 3333332 33444554444444443
No 373
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.072 Score=55.28 Aligned_cols=218 Identities=11% Similarity=0.109 Sum_probs=130.7
Q ss_pred EEEcCCCCeEE-EEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe---
Q 002493 21 VDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (915)
Q Consensus 21 ~~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--- 96 (915)
..|.|+...|+ +--..+.|+-|+..+++. ..+. +.+.+.++.....+..|+++.. | +.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecccc
Confidence 35778877554 444578899999776643 3344 3344455555555555655533 2 5566666665533322
Q ss_pred --cCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEEC
Q 002493 97 --AHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 97 --~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 163 (915)
......+.+...|+|.+.++... -|.|+.+|. .+ ........+-..-..++||| +++.|..+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 12245667888999986664433 144555554 33 45555555555567899999 6766665544
Q ss_pred -CCcEEEEECCC--CC---C--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC-eEEEEECCCCcEEEEecCCccCeEE
Q 002493 164 -DRTIKIWNLGS--PD---P--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 164 -dg~i~i~d~~~--~~---~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~ 234 (915)
.+.|..|++.. +. . ...+....+..-.++...+|. +.+++...| .|.+|+.+ |+.+..+......+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~--lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN--LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC--EEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 57888887752 11 1 111222334455666665665 444554444 99999988 9999888877677888
Q ss_pred EEEeC-CCCEEEEEE
Q 002493 235 VCFHP-ELPIIITGS 248 (915)
Q Consensus 235 i~~~~-~~~~l~~~~ 248 (915)
++|-. +.+.|.+.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 88864 444444433
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.37 E-value=0.012 Score=67.15 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=103.1
Q ss_pred CCEEEEEEcCCCCeEEEEE------cCC--cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---------
Q 002493 16 ERVKSVDLHPSEPWILASL------YSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--------- 78 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--------- 78 (915)
..+.+.++||+|+.+|... .++ .|.+++. .+.. ..+.. ....+.-.|+|+|++|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999888765 233 4555564 2322 33322 2247889999999988877543
Q ss_pred ---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEE---EECCCCeeEE----EEeecCCccEEEE
Q 002493 79 ---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL---WDWEKGWMCT----QIFEGHSHYVMQV 148 (915)
Q Consensus 79 ---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~v~~~ 148 (915)
+.+.+.++..+.... ...+.|..+.|||||.+++... +|.|.+ -....+.... .....-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333333332221 2345799999999999988766 477877 4434442111 1112223346789
Q ss_pred EEccCCCCEEEEEECCCcEEEE--ECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002493 149 TFNPKDTNTFASASLDRTIKIW--NLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
.|.+ ++. |+++..++...+| ++...... .+.. ...++..++-++ . -+++...++.+.+
T Consensus 503 ~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~--~--~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASP--S--TVYVTDARAVLQL 564 (591)
T ss_pred eEec-CCE-EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCC--c--eEEEEcCCceEEe
Confidence 9997 555 4565555444444 44433221 1122 244555555543 2 2555566664444
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.046 Score=54.11 Aligned_cols=165 Identities=10% Similarity=0.116 Sum_probs=118.9
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
..|-...|.++.|+|+.+.|.+......-.|+=..+|+.+.++... -...-.+.|..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455566999999999998888887777778877889998887632 233467889988888888777899999887654
Q ss_pred ceeEEEe---------cC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE--EEEeecC-------CccEEEEEE
Q 002493 90 DKVKVFE---------AH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQIFEGH-------SHYVMQVTF 150 (915)
Q Consensus 90 ~~~~~~~---------~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~v~~~~~ 150 (915)
..+..+. .+ +.....++|.|.+..|+.+-+..-+.|+.+...... ......+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 3222111 12 556789999999999999988888888876643111 1111111 134678889
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCC
Q 002493 151 NPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
++..+++++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9878889999999999988887543
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.27 E-value=0.3 Score=50.40 Aligned_cols=230 Identities=12% Similarity=0.103 Sum_probs=105.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe--cC---CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002493 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--AH---TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 56 ~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~---~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
...++..|.|..+..-+++|. .+.| +-..+.|+.-.... .. .-...++.|..+ . ..+++..|. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~-g~ivG~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-E-GWIVGEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-E-EEEEEETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-c-eEEEcCCce-EEEecCC
Confidence 456899999996666677764 4543 22223333222111 11 123567777643 3 334455554 4444455
Q ss_pred CeeEEEEe--ecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 131 GWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 131 ~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
+.....+. ..-......+.... +. .....+..|.|..- .+.++.= .........+..+.-++++. +++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSR 164 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS---EEEEETT
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECc
Confidence 53433332 12223334444443 33 44444555655432 2333322 22334456677777777776 6777765
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEe-CCCcceeee----eecCCccEEEEEEecC
Q 002493 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH-ATTYRLENT----LNYGLERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~i~~~~~ 282 (915)
.....-||.-...-...-+.....|.++.|.|++.+.+++ ..|.|++=+ ......... +....-.+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 5556678754322222233356789999999998766654 788888876 222222111 1122234789999998
Q ss_pred CCEEEEEecCCeEEE
Q 002493 283 SRRIVIGYDEGTIMV 297 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i 297 (915)
+...++|+ .|.+..
T Consensus 244 ~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV 257 (302)
T ss_dssp S-EEEEES-TT-EEE
T ss_pred CCEEEEeC-CccEEE
Confidence 77666554 455544
No 377
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.21 E-value=0.7 Score=53.47 Aligned_cols=402 Identities=12% Similarity=0.128 Sum_probs=200.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCC------CEEEEEEcCCeEEEEECC-
Q 002493 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWE- 129 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~------~~l~~~~~dg~i~iwd~~- 129 (915)
+.++....+.+...++.++.++.+....+..+...... ......|.|+.++|-| +++++|..+..+.+.-..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34555555566667888877777777777655422221 1234579999999752 268888776655544322
Q ss_pred CCeeEEEE-eec--CCccEEEEEEccCCCCEEEEEECCCcEEEEECC--CCCCce--EEecCCCCeeEEEEEeCCCcCEE
Q 002493 130 KGWMCTQI-FEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNF--TLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 130 ~~~~~~~~-~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
........ +.+ -+..|.-..+-. +..+|.++..||.+..|-+. ++.... +..-...|+.--.|+..+.. .+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t-~v 645 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT-AV 645 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce-EE
Confidence 22111111 111 123344444543 57899999999998776554 332211 11122345555556555543 34
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE-EeCC-C-CEEEEEEcCCcEEEEeCCCcce--eeeeecCCccEEEE
Q 002493 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC-FHPE-L-PIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWAI 277 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~-~~~~-~-~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i 277 (915)
+++ +|+-..+|..+ ++.+.+--. -..+..+| |+.+ . ..++++. .+.+++.-+..-+. ++++..+ .....+
T Consensus 646 fa~-sdrP~viY~~n-~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI 720 (1096)
T KOG1897|consen 646 FAL-SDRPTVIYSSN-GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRI 720 (1096)
T ss_pred EEe-CCCCEEEEecC-CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhhe
Confidence 444 45555556543 443332111 11112221 2221 1 2344444 45677776654332 2333333 566788
Q ss_pred EEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCcee-eeeeeecCCccc--
Q 002493 278 GYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL-PLAVKELGTCDL-- 354 (915)
Q Consensus 278 ~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-- 354 (915)
++.+....+.+.+..+...... +.....+..+. +-|.... .+...++..++.
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~----------------~~ee~~~s~l~---------vlD~nTf~vl~~hef~~~E~~~ 775 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEY----------------YGEEYEVSFLR---------VLDQNTFEVLSSHEFERNETAL 775 (1096)
T ss_pred EecccceEEEEEecccccchhh----------------cCCcceEEEEE---------EecCCceeEEeeccccccceee
Confidence 8888666666665544333210 00001111111 0011100 111111222221
Q ss_pred CCceEEECCC-CCEEEEEc-----------CCcEEEEEeecccc-------cCccceeEEEEecCCcEEEEecCCeEEEe
Q 002493 355 YPQSLKHNPN-GRFVVVCG-----------DGEYIIYTALAWRN-------RSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (915)
Q Consensus 355 ~~~~l~~s~~-g~~lav~~-----------~~~~~i~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~~~v~v~ 415 (915)
.+-+..|..| +.+++||+ .|++.+|....... .-.|.+.++.- -+|+++|. -+..|++|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~-In~~vrLy 853 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG-INQSVRLY 853 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe-cCcEEEEE
Confidence 2234456666 77888875 37888887665211 11123332211 25666554 35678888
Q ss_pred ccCccceeeeec-Ccccc-ee---ecCcEEEEeeCC---eEEEEeccCCcEEEEEE----ccccEEEEcCCCCEEEEEeC
Q 002493 416 SKNFQEKRSVRP-TFSAE-RI---YGGTLLAMCSND---FICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASD 483 (915)
Q Consensus 416 ~~~~~~~~~~~~-~~s~~-~i---~~g~~La~~~~~---~v~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~ 483 (915)
+...+..-.+.. -+.+. .+ ..|..+++++-- ++..|+-..|..+...+ ..++.+.+-.+..++.+-..
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 755431111111 11111 01 147788887644 78888877776654433 25667777777777776667
Q ss_pred CeEEEEEecH
Q 002493 484 TSFYILKYNR 493 (915)
Q Consensus 484 ~~~~~~~~~~ 493 (915)
.+++++.++.
T Consensus 934 gNlf~v~~d~ 943 (1096)
T KOG1897|consen 934 GNLFTVRKDS 943 (1096)
T ss_pred ccEEEEEecC
Confidence 7777776553
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.14 E-value=0.053 Score=45.60 Aligned_cols=102 Identities=20% Similarity=0.378 Sum_probs=70.1
Q ss_pred eeEEEEEe---CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002493 188 VNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 188 v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
|++++++. +|. +-|++|+.|..|++|+- ...+..+. ....|++++-... ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 45666554 232 37999999999999984 46666666 4456778777766 56888999999999984 2334
Q ss_pred eeeecCCccEEEEEEecCC----CEEEEEecCCeEEE
Q 002493 265 NTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMV 297 (915)
Q Consensus 265 ~~~~~~~~~v~~i~~~~~~----~~l~~g~~dg~v~i 297 (915)
+..+.. ..+.++.+..-. .-|++|-.+|.+-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 346666654432 36888999988754
No 379
>PRK10115 protease 2; Provisional
Probab=97.14 E-value=0.92 Score=53.51 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=124.6
Q ss_pred CEEEEEEcCCCCeEEEEEc-C----CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEE
Q 002493 17 RVKSVDLHPSEPWILASLY-S----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYN 85 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d------g~i~vwd 85 (915)
.+..+.|||||++|+.+.. + ..|++.|+.+|..+...-.. .-..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4778899999999998754 2 34889999888643221111 11469999999877766442 3788888
Q ss_pred CCCC--ceeEEEecCCCCEE-EEEEcCCCCEEEEEEc---CCeEEEEECC--CCeeEEEEeecCCccEEEEEEccCCCCE
Q 002493 86 YNTM--DKVKVFEAHTDYIR-CVAVHPTLPYVLSSSD---DMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 86 ~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 157 (915)
+.++ +-...+........ ....+.++++++..+. ++.+.+++.. .+ .....+.........+. +. + +.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~-~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HY-Q-HR 281 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eC-C-CE
Confidence 8887 44445553333333 3334448887765543 3578888843 23 12222222222222222 32 2 34
Q ss_pred EEEEECC----CcEEEEECCCCCCceEEecC-C-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEec-CCc
Q 002493 158 FASASLD----RTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLE-GHT 229 (915)
Q Consensus 158 l~~~~~d----g~i~i~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~ 229 (915)
|...+.. ..|...++.+...-..+..+ . ..+..+.++ ++. ++++...+|.-+++-+.. +..+..+. ...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~-l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDW-LVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCE-EEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 4433332 23444455422222333333 2 357777776 332 666666677655554432 23334333 222
Q ss_pred cCeEEEEEe--CCCC-EEEEEE---cCCcEEEEeCCCcc
Q 002493 230 HNVSAVCFH--PELP-IIITGS---EDGTVRIWHATTYR 262 (915)
Q Consensus 230 ~~i~~i~~~--~~~~-~l~~~~---~dg~v~iwd~~~~~ 262 (915)
..+..+.++ +++. ++++.+ .-+.+..+|..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333444 3333 443333 23568888877654
No 380
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.034 Score=63.71 Aligned_cols=216 Identities=7% Similarity=0.018 Sum_probs=104.7
Q ss_pred cEEEEECCCCceeEEEEecCCCE-EEEEEeCCCCEEEEEeCC------CeEEEEECCCCceeEEEecCCCCEEEEEEcCC
Q 002493 38 TVCIWNYQSQTMAKSFEVTELPV-RSAKFVARKQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT 110 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 110 (915)
.+..||..+++....-....... .+++ .-++...++|+.+ ..+..||..+......-.-....-......-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57788877764322111111111 1222 2366777777753 35778888776543221111111111112225
Q ss_pred CCEEEEEEcCC-----eEEEEECCCCeeEEE--EeecCCccEEEEEEccCCCCEEEEEECCC------------------
Q 002493 111 LPYVLSSSDDM-----LIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDTNTFASASLDR------------------ 165 (915)
Q Consensus 111 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------------------ 165 (915)
|...+.|+.++ ++..||..++ .... .+.........+.. ++.+.++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 66667777653 4788998865 2222 11111111112222 577778777653
Q ss_pred -----cEEEEECCCCCCceEEecCCCCe-eEEEEEeCCCcCEEEEEeCC------CeEEEEECCC-CcE--EEEecCCcc
Q 002493 166 -----TIKIWNLGSPDPNFTLDAHQKGV-NCVDYFTGGDKPYLITGSDD------HTAKVWDYQT-KSC--VQTLEGHTH 230 (915)
Q Consensus 166 -----~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~ 230 (915)
++..||..+.+-...-.-..... .+++ .-++. +.+.|+.+ ..+..||..+ .+- +..+.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~--IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD--IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE--EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 46678876653221111001111 1222 22333 55666543 2467899886 442 233322222
Q ss_pred CeEEEEEeCCCCEEEEEEcCC--cEEEEeCCCcce
Q 002493 231 NVSAVCFHPELPIIITGSEDG--TVRIWHATTYRL 263 (915)
Q Consensus 231 ~i~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~~ 263 (915)
....+.+ ++++.++||.+| .+..||..+.+-
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 2222222 667888999888 677777766553
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.12 E-value=0.15 Score=48.43 Aligned_cols=214 Identities=12% Similarity=0.159 Sum_probs=114.2
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEE-eCCCeEEEEECC--CCceeEEEe-----
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAG-ADDMFIRVYNYN--TMDKVKVFE----- 96 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~g-~~dg~i~vwd~~--~~~~~~~~~----- 96 (915)
+.++.+--..|.|+-||+.+.+..+. +....++.++.+--.+ +-++++ +..-.|.-||.. .-....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34455555578888899876544332 2122223333332222 223333 333344456632 222222211
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc---------CCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 97 AHTDYIRCVAVHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
....+...-..+|+|++..-.-. .|.++.|-.... +..++ ..-.--..++|+.+...+.++-+.+-+|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee-hhccCCccccccccCcEEEEEccCceEE
Confidence 12345666778999998432211 244444443322 11111 1112235678886334445566677788
Q ss_pred EEEE--CCCCC-----CceEEec----CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002493 168 KIWN--LGSPD-----PNFTLDA----HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 168 ~i~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
.-|| ..++. .+..++. .......+++...| .+.++....++|...|..+|+.+.++.-....|+++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7787 44442 2222221 11112334444344 4788888899999999999999999998888999999
Q ss_pred EeCC-CCEEEE
Q 002493 237 FHPE-LPIIIT 246 (915)
Q Consensus 237 ~~~~-~~~l~~ 246 (915)
|-.. -..+.+
T Consensus 261 FgGkn~d~~yv 271 (310)
T KOG4499|consen 261 FGGKNLDILYV 271 (310)
T ss_pred ecCCCccEEEE
Confidence 9653 334443
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.2 Score=49.24 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=132.7
Q ss_pred EEEEEccCCCCEEEEEECCCc-EEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEEEeCC-----CeEEEEECC
Q 002493 146 MQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQ 217 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 217 (915)
..++++|.....++.+-.-|+ ..++|.++.+...++...++. .-.-.|+|+|. +|.+.-.| |.|-+||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc
Confidence 457788877777887777776 468899887776666443322 12346888887 56655433 789999987
Q ss_pred CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEc------------------CCcEEEEeCCCcceeeeeec----CCccE
Q 002493 218 TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSE------------------DGTVRIWHATTYRLENTLNY----GLERV 274 (915)
Q Consensus 218 ~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~~----~~~~v 274 (915)
.+ +.+-.+..|.-....+.|.+||+.++.+.. .-++.+.|..+|.++..... +..++
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 53 456677777777788999999998887532 11233444445554432221 22345
Q ss_pred EEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCccc
Q 002493 275 WAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL 354 (915)
Q Consensus 275 ~~i~~~~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 354 (915)
..++..+||..++.+-..|. -..-++++.+...|+-+ ..+. ++-........
T Consensus 229 RHld~g~dgtvwfgcQy~G~----~~d~ppLvg~~~~g~~l-------~~~~-----------------~pee~~~~~an 280 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGP----RNDLPPLVGHFRKGEPL-------EFLD-----------------LPEEQTAAFAN 280 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCC----CccCCcceeeccCCCcC-------cccC-----------------CCHHHHHHHHh
Confidence 55666655554433222111 01112222222211111 1111 11011112234
Q ss_pred CCceEEECCCCCEEEEEc--CCcEEEEEeecccccCccceeEEEE--ecCCcEEEEecCCeEEEec
Q 002493 355 YPQSLKHNPNGRFVVVCG--DGEYIIYTALAWRNRSFGSALEFVW--SSDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 355 ~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~~~v~v~~ 416 (915)
++-+++.+.+..+++..+ .+.+.+|+..+........+.+.+- ...+-++++..+|.+..++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence 677888888777777776 6678888877665433332222211 1123455555567776663
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.046 Score=62.45 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=103.7
Q ss_pred CCEEEEEEeCCCCEEEEEe------CCC--eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC---------
Q 002493 58 LPVRSAKFVARKQWVVAGA------DDM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--------- 120 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~~g~------~dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--------- 120 (915)
..+...+.+|+|+.++... .|+ .|.+++.. +.......+ ...+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999987765 243 55555642 233222232 237889999998877776532
Q ss_pred ---CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEE---EECCCCCCc----eEEec-CCCCee
Q 002493 121 ---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI---WNLGSPDPN----FTLDA-HQKGVN 189 (915)
Q Consensus 121 ---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i---~d~~~~~~~----~~~~~-~~~~v~ 189 (915)
+.+.+.+++.++. .. .....|..+.|+| |+..++... +|.|.+ -....+... ..+.. ....+.
T Consensus 427 ~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAV-AS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchh-hh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334443311 11 2345699999999 788777765 477776 443344311 11222 223357
Q ss_pred EEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcCCcEEE
Q 002493 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~v~i 255 (915)
.+.|..++. |+++..++...+|.+.- |.....+.. ...++..++-+++ .++....+|.+.+
T Consensus 501 ~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 899998876 55655554444454332 322222222 2456777776663 3555555664443
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.011 Score=68.10 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=76.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
++..++-.-.+.+++.|++.|.+-..|+.+. .+...=..-.++|++++|+.+|.+++.|-.+|.|.+||+..+ ...+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceee
Confidence 3444444446678999999999999887653 111122234578999999999999999999999999999987 55666
Q ss_pred eecCCccEEEE---EEccCCCCEEEEEECCCcEEEEEC
Q 002493 138 FEGHSHYVMQV---TFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 138 ~~~~~~~v~~~---~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
+..|..+.+.+ .+.. ++..+.++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 65555554443 3333 4556777777776 5654
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.00072 Score=63.74 Aligned_cols=141 Identities=10% Similarity=0.084 Sum_probs=78.5
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceE-EecCCCCeeEEE
Q 002493 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVD 192 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~ 192 (915)
+...+.||.|.-++++.-....+.-.-|. +..--+..+..+++|+.+|.|.+|.......... .......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44456677777777664322222111121 1111122467899999999999998763222211 112222333322
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEE--EcCCcEEEEeCC
Q 002493 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITG--SEDGTVRIWHAT 259 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~dg~v~iwd~~ 259 (915)
-. .....+.++++.+|.|+.|++..++.+-....|. .++.....+..+.++... |.|..++.|++.
T Consensus 109 p~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11 1222378899999999999998887777666665 444444444444455554 555555555554
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.07 E-value=0.046 Score=45.97 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=68.9
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 60 VRSAKFVA---RK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 60 v~~~~~~~---~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
|+++++.. +| +.|++||.|..|++|+- .+.+..+.. .+.|++++-... ..++.+..+|+|-+|+-... .-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 56666654 22 67999999999999974 356666664 456788877766 57999999999999986432 22
Q ss_pred EEeecCCccEEEEEEcc---CCCCEEEEEECCCcEE
Q 002493 136 QIFEGHSHYVMQVTFNP---KDTNTFASASLDRTIK 168 (915)
Q Consensus 136 ~~~~~~~~~v~~~~~~p---~~~~~l~~~~~dg~i~ 168 (915)
+.- ....++++.+.. +...-|++|-.+|.|-
T Consensus 76 RiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222 223366666653 1224688888888764
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.17 Score=52.52 Aligned_cols=220 Identities=11% Similarity=0.068 Sum_probs=127.1
Q ss_pred EEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee--
Q 002493 63 AKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-- 139 (915)
Q Consensus 63 ~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 139 (915)
-.|.++...|+ +--..+.|.-|+..+++. ..+.. .+.+.++..-..+..|+++.. -+.+++.+++........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35677777554 444577899998876543 33332 333455544444445555543 356677665523122211
Q ss_pred -c-CCccEEEEEEccCCCCEEEEEEC-----------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 140 -G-HSHYVMQVTFNPKDTNTFASASL-----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 140 -~-~~~~v~~~~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
+ .......+...| ++.+.+.... -|.|+.+|. .+.....+..+-..-+.++|||+++. ++++=+
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE-EEEEeC
Confidence 1 123455677777 5554443322 133444443 34444444444556689999999973 444444
Q ss_pred CCCeEEEEECCC--C----cE-EEEecCCccCeEEEEEeCCCCEEEEEEcCC-cEEEEeCCCcceeeeeecCCccEEEEE
Q 002493 207 DDHTAKVWDYQT--K----SC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 207 ~dg~i~iwd~~~--~----~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
..+.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 558888887752 1 11 222223345566778888888775554444 89999977 999998888877778888
Q ss_pred Eec-CCCEEEEEe
Q 002493 279 YMK-SSRRIVIGY 290 (915)
Q Consensus 279 ~~~-~~~~l~~g~ 290 (915)
|-- +.+.|.+.+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 753 344554443
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.53 Score=49.99 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----ceeEEEec---C----CCCEEEEEEcCCCCEEEEEEc------CCeEEEEECC
Q 002493 68 RKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEA---H----TDYIRCVAVHPTLPYVLSSSD------DMLIKLWDWE 129 (915)
Q Consensus 68 ~~~~l~~g~-~dg~i~vwd~~~~----~~~~~~~~---~----~~~i~~l~~s~~~~~l~~~~~------dg~i~iwd~~ 129 (915)
+.++|+..+ .++.|.|+|+.+. +..+++.. + -......-.-|+|+.++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6889999998743 33444442 1 123344555688988887633 3568888877
Q ss_pred CCeeEEEEeec---CCccEEEEEEccCCCCEEEEEEC--------------------CCcEEEEECCCCCCceEEecCCC
Q 002493 130 KGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASL--------------------DRTIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 130 ~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~ 186 (915)
+. .+...... ....-..+-|.| ..+.++++.. ..++.+||+.+.+.++++.-...
T Consensus 166 tf-~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TF-EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc-cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 65 33333332 233456778888 7788887653 35799999999999988875433
Q ss_pred --CeeEEEEEeCCCcCEEEEEe-CCCeEEEEEC-CCCc----EEEEecCC-----------------ccCeEEEEEeCCC
Q 002493 187 --GVNCVDYFTGGDKPYLITGS-DDHTAKVWDY-QTKS----CVQTLEGH-----------------THNVSAVCFHPEL 241 (915)
Q Consensus 187 --~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i~~i~~~~~~ 241 (915)
-...+.|.++....+=++|+ -..+|..|-- ..++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 34578888776655544443 3444544432 3332 12222110 2347899999999
Q ss_pred CEEEEEE-cCCcEEEEeCCCc
Q 002493 242 PIIITGS-EDGTVRIWHATTY 261 (915)
Q Consensus 242 ~~l~~~~-~dg~v~iwd~~~~ 261 (915)
++|..++ ..|.|+.||+...
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 9887665 6899999998764
No 389
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.06 E-value=0.65 Score=50.29 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=146.9
Q ss_pred CCeEEEEEcCCcEEEEECCCCcee---EEEE-ecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCC--Cc-----
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMA---KSFE-VTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNT--MD----- 90 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~~~~~~-----~~~~l~~g~~dg~i~vwd~~~--~~----- 90 (915)
...|++|+.+|.++||+...+... ..++ .-..||..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 358999999999999997543311 1111 2456777776542 2334555 4556788887621 11
Q ss_pred --eeEEEecCC--CCEEEEEEcCC-----CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEE
Q 002493 91 --KVKVFEAHT--DYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 91 --~~~~~~~~~--~~i~~l~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 161 (915)
.+..+..|. .....+++-|- ..+|++-+-||.+.+++-+.- .....+.. .--...+.+.| ..+.|+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~-~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCP-RTDSFVTA 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEee-cCCEEEEe
Confidence 122222232 22334444332 357888999999999997764 32333332 22234567777 77889998
Q ss_pred ECCCcEEEEECCC--------------------CC---CceEEecCCCCeeEEEEEeC-CCcCEEEEEeCCCeEEEEECC
Q 002493 162 SLDRTIKIWNLGS--------------------PD---PNFTLDAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 162 ~~dg~i~i~d~~~--------------------~~---~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 217 (915)
+.+..+..|.... ++ +.+++.- ...+..+..... +....+++-+ ...+.+.+-
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 8888888886521 00 1112221 122333332222 1222344444 345666664
Q ss_pred CCcEEEEecCCccCeEEEE-EeC----CC---CEEEEEEcCCcEEEEeCCCcceeeeeecCCccE--EEEEEecCCCEEE
Q 002493 218 TKSCVQTLEGHTHNVSAVC-FHP----EL---PIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSRRIV 287 (915)
Q Consensus 218 ~~~~~~~~~~~~~~i~~i~-~~~----~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~ 287 (915)
+|......+- .....+++ +.. .+ ..+++++.++++.||.- .++.+.-+....+| .-..+..-...|+
T Consensus 270 ~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV 346 (418)
T PF14727_consen 270 NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIV 346 (418)
T ss_pred CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEE
Confidence 4544433332 22222222 211 22 25888899999999963 34555554443333 2222333456788
Q ss_pred EEecCCeEEE-ecCCCcceeE
Q 002493 288 IGYDEGTIMV-KIGREEPVAS 307 (915)
Q Consensus 288 ~g~~dg~v~i-~~~~~~~~~~ 307 (915)
+-+++|.+.+ +++.+++...
T Consensus 347 ~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 347 SLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred EEcCCCcEEEEEeCCCCcccc
Confidence 8888999888 5666665443
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.15 Score=50.61 Aligned_cols=170 Identities=9% Similarity=0.065 Sum_probs=113.4
Q ss_pred EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 53 FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 53 ~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
+.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -.....|.+..+|++.++--.++.+.++.++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444556999999999999999988888888877889999887521 223567888888888888878888988877654
Q ss_pred eeEEE---------EeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE---ecC-------CCCeeEEE
Q 002493 132 WMCTQ---------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAH-------QKGVNCVD 192 (915)
Q Consensus 132 ~~~~~---------~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~-------~~~v~~~~ 192 (915)
..... ...+.+...-.++|.| ....|..+-+-.-+.||........... ..+ -..|.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 22211 1112255678899999 6667777777777777766533211111 011 12356677
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe
Q 002493 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (915)
|.+..+. +++-+..++.+.-.|.. |.++..+
T Consensus 240 ~~~~~~~-LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 240 FNAITNS-LLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred ecCCCCc-EEEEecCCceEEEEecC-CCeeeeE
Confidence 7765443 67777778888888865 5544433
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.03 E-value=0.29 Score=48.69 Aligned_cols=182 Identities=11% Similarity=0.053 Sum_probs=110.3
Q ss_pred EEEEEEcCCCCeEEEEEcCC--cEEEEECCCCceeEEEEecCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002493 18 VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---.++.. +++.....-.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34577767777666666555 699999999988776654322 11233333 333444556789999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-cCC---ccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS---HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~---~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+.- .+.=+.++ .+++.|+.+.....|.++|..+......+.. ... ..+.-+.|. ++...+-.-....|...
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEE
Confidence 864 34556676 4567788777788999999887633222211 111 234556665 45555555556667777
Q ss_pred ECCCCCCceEEe---------------cCCCCeeEEEEEeCCCcCEEEEEe
Q 002493 171 NLGSPDPNFTLD---------------AHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 171 d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
|..+|+....+. ....-.+.|+|.|..+. ++++|-
T Consensus 201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTGK 250 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTGK 250 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEET
T ss_pred eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEeC
Confidence 887777655442 01345789999988775 666663
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0041 Score=71.28 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCcEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002493 26 SEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
.+.++++|+..|.|...|.... +. ..-....++|++++|+.+|..++.|-.+|.|.+||..+++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3567899999999999886442 22 11222457999999999999999999999999999999999888876655544
Q ss_pred E---EEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 104 C---VAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 104 ~---l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+ +.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 444556667888877775 5543
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.46 Score=51.82 Aligned_cols=153 Identities=11% Similarity=0.048 Sum_probs=92.4
Q ss_pred cCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEC
Q 002493 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~g~~dg~i~vwd~ 86 (915)
.--.+|..++|..-.+.+++.. .+|.+++=| ...+..| ..|..+.|.|- ...+.+......|.||-+
T Consensus 17 qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 17 QAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3345788899985555555554 355554433 2233333 35889999985 335666677889999987
Q ss_pred C-----CCceeEEEecC---CC--CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCC
Q 002493 87 N-----TMDKVKVFEAH---TD--YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 87 ~-----~~~~~~~~~~~---~~--~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 156 (915)
. +++.+..-..+ .- -...+.|+|....|++-.....=.+.++.......+.-....+.|.|.+|.+ |++
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCC
Confidence 5 22222221111 11 1246789999988877666554455666543333333335667899999999 666
Q ss_pred EEEEEE-CCCcEEEEECC
Q 002493 157 TFASAS-LDRTIKIWNLG 173 (915)
Q Consensus 157 ~l~~~~-~dg~i~i~d~~ 173 (915)
.|+++- ..=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 666554 33346788853
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.003 Score=41.94 Aligned_cols=39 Identities=41% Similarity=0.609 Sum_probs=34.2
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002493 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++....+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.89 E-value=0.0031 Score=41.89 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=34.2
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002493 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd 85 (915)
++....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.043 Score=58.34 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=99.9
Q ss_pred CCCEEE-EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCE-----EEEEeCCCeEEEEECCCC-c-EEEEe
Q 002493 154 DTNTFA-SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-----LITGSDDHTAKVWDYQTK-S-CVQTL 225 (915)
Q Consensus 154 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~-~-~~~~~ 225 (915)
+.++++ .+.....++-.|+..|+.+..+..+.. |+-+.+.|+.+... -++|-++..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455556788889999999888876655 78888888764322 356778889999998742 2 22222
Q ss_pred cCC----ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee-eeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 226 EGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 226 ~~~----~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
++| .....|++-..+| +|++||.+|.||+||- .++.- ..+.+-..+|..+..+.+|++|++.+..-.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 222 2346677777666 8999999999999996 55543 445555678999999999999988887666555
No 397
>PRK13684 Ycf48-like protein; Provisional
Probab=96.85 E-value=0.88 Score=48.48 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=109.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..++.++.|.....-+++|. +|.| |.. +.|+.-.... ....++.++.|.++ ..+++ +..|.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666677775 4543 332 2232221111 12234677888754 33444 455544332 2333
Q ss_pred eeEEEEeec--CC-ccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002493 132 WMCTQIFEG--HS-HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 132 ~~~~~~~~~--~~-~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
......... .. .........+ +..+ ..+..|.|..-+ +.++.=..+ ......+..+.+.+++. ++..+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~--~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~---~v~~g~ 191 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP--GTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK---YVAVSS 191 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC--Ccce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe---EEEEeC
Confidence 222222111 11 1122222322 2233 344455543322 233322222 22345678888887654 445555
Q ss_pred CCeEEE-EECCCCcEEE-EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec----CCccEEEEEEec
Q 002493 208 DHTAKV-WDYQTKSCVQ-TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMK 281 (915)
Q Consensus 208 dg~i~i-wd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~ 281 (915)
.|.+.. ++ ..++.-. ........+.++.+.++++.++++ ..|.+++=....+..-..... ....+.++.+.|
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC
Confidence 565543 22 2223222 222345678999999999877765 467665433344433222221 123577888988
Q ss_pred CCCEEEEEecCCeEEE
Q 002493 282 SSRRIVIGYDEGTIMV 297 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~i 297 (915)
++..++ ++.+|.+..
T Consensus 270 ~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 270 PGEIWA-GGGNGTLLV 284 (334)
T ss_pred CCCEEE-EcCCCeEEE
Confidence 776554 445665554
No 398
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.81 E-value=0.026 Score=65.27 Aligned_cols=136 Identities=12% Similarity=0.168 Sum_probs=92.7
Q ss_pred EcCCeEEEEECCCCeeEEEEeecCCcc-EEEEEEcc----CCCCEEEEEECCCcEEEEECCCCCC-ceEEe----cCCCC
Q 002493 118 SDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDP-NFTLD----AHQKG 187 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~p----~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~----~~~~~ 187 (915)
.....|+-.|++.| +++..+..|... |..++-.. -.+...++|-.+..+..||.+-... +..-. .....
T Consensus 501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34578999999999 666666666543 55544321 1234566777788999999986431 11111 23344
Q ss_pred eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002493 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
..|++-+.+| +|++|+.+|.||+||--..+....+.+...+|..|..+.||++|++.+ +..|.+++.
T Consensus 580 Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5666655555 699999999999999433333445667788999999999999988877 447777774
No 399
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.021 Score=65.12 Aligned_cols=114 Identities=22% Similarity=0.196 Sum_probs=81.7
Q ss_pred ccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc---hhHHHHHhcCCHHHHHH------------
Q 002493 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS---GLLLLYSSLGDAEGISK------------ 715 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~---~l~~l~~~~~~~~~~~~------------ 715 (915)
..++++.|+++|.+...+..|.+||.+-++.+.+..|.+.|.++.|.. .++.+....|..+.+.+
T Consensus 1087 ~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 568899999999999999999999999999999999999999998654 44445555665554432
Q ss_pred ---------------------------------HHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002493 716 ---------------------------------LASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 716 ---------------------------------l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~ 762 (915)
++..+..++.+..|..+|....++.+-...++..|.+.-|+.-||+-
T Consensus 1167 ~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1167 YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 22333444455555555555556666666666667777777777765
Q ss_pred CC
Q 002493 763 LP 764 (915)
Q Consensus 763 ~~ 764 (915)
..
T Consensus 1247 ns 1248 (1666)
T KOG0985|consen 1247 NS 1248 (1666)
T ss_pred cc
Confidence 43
No 400
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.78 E-value=1.2 Score=48.92 Aligned_cols=150 Identities=11% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCEEEEEEeCCCCEEE-EEe--CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEECCC
Q 002493 58 LPVRSAKFVARKQWVV-AGA--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT----LPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 58 ~~v~~~~~~~~~~~l~-~g~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~l~~~~~dg~i~iwd~~~ 130 (915)
.|+..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|.|- .+.++.......|.+|.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899997 555444 432 244443332 1233333 35889999985 44566666778999998752
Q ss_pred -----C-eeEEEEeec---CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcC
Q 002493 131 -----G-WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 131 -----~-~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 200 (915)
+ +.+.++..- ..---..+.|+| ....|++-.....-.+++++........ -...+-|.|.+|.++|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R- 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR- 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE-
Confidence 1 112222111 111124578999 6666666555444345565443322222 245678999999999986
Q ss_pred EEEEEeCCCeEEEEECC
Q 002493 201 YLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~ 217 (915)
++++.++.=.-++||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 45555555667889854
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.78 E-value=0.082 Score=60.43 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=118.3
Q ss_pred cCCCCeEEEEEcC------CcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCc
Q 002493 24 HPSEPWILASLYS------GTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMD 90 (915)
Q Consensus 24 sp~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~ 90 (915)
+..+..+++|+.. ..+..||..++........ ....-.+++.. ++...++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345667777776 3588899887744332222 22223344443 55788888888 367788888776
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEECCCC-eeEEEEeecCCccEEEEEEccCCCCEEEEEECC
Q 002493 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 164 (915)
....-.-.......-.-.-+|...++|+.|| ++-.||..+. |...............+.+ ++.+.++|+.+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~ 437 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGD 437 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcC
Confidence 5442221111111111122577778888885 4777887765 1111111111111222222 67888888865
Q ss_pred C------cEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEeCCC-----eEEEEECCCCcEEEEecCCccC
Q 002493 165 R------TIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHN 231 (915)
Q Consensus 165 g------~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 231 (915)
+ ++..||..+++-.. .+....... .++.. ++. +.++|+.|+ +|..||..+.+.... .....+
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~--iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK--IYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSP 512 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE--EEEECCccCCCccceEEEEcCCCCceeEc-ccCccc
Confidence 4 46778877654222 111111111 22222 333 677777665 377788877654332 112222
Q ss_pred eEEEEE-eCCCCEEEEEEcCCc-----EEEEeCCCc
Q 002493 232 VSAVCF-HPELPIIITGSEDGT-----VRIWHATTY 261 (915)
Q Consensus 232 i~~i~~-~~~~~~l~~~~~dg~-----v~iwd~~~~ 261 (915)
...+.. .-++...++|+.||. |..||..+.
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 222222 224567778887763 555654443
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.72 Score=45.52 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=137.4
Q ss_pred CCceeEEEEecCCCEEEEEEeCCCCE-EEEEeCCC-eEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEEEEEcC-
Q 002493 46 SQTMAKSFEVTELPVRSAKFVARKQW-VVAGADDM-FIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVLSSSDD- 120 (915)
Q Consensus 46 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~~~~~d- 120 (915)
.|+++.... -......++|+|.... ++.+-.-| ...++|.++.+....+...++. .-.-.|||||.+|...-.|
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 344443332 2234456777775443 44444444 4568899888777666543332 2235799999988866443
Q ss_pred ----CeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEE--------------------EEECCCCC
Q 002493 121 ----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK--------------------IWNLGSPD 176 (915)
Q Consensus 121 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~--------------------i~d~~~~~ 176 (915)
|.|-|||.+.+....-.+..|.-....+.|.+ |+.+++.+. |-|. +.|..++.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccc
Confidence 88999999977666666777777777889998 888888764 3333 22322333
Q ss_pred CceE--Ee--cCCCCeeEEEEEeCCCcCEEEEEeC-CCe-----EEEEECCCCcEEEEecC-------CccCeEEEEEeC
Q 002493 177 PNFT--LD--AHQKGVNCVDYFTGGDKPYLITGSD-DHT-----AKVWDYQTKSCVQTLEG-------HTHNVSAVCFHP 239 (915)
Q Consensus 177 ~~~~--~~--~~~~~v~~~~~~~~~~~~~l~~~~~-dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~i~~~~ 239 (915)
.+.+ +. .+.-.+..++.-+++. +..|+. .|. -.+=-...++++.-+.. ....|-+|+.+.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgt---vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGT---VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCc---EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 2221 11 2334455666655554 433332 110 01111122333333321 234577888887
Q ss_pred CCCEEEEEE-cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 240 ELPIIITGS-EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
+..+++..+ ..+...+||..+|..+....... +.-.-+...-+++.+.+|.+.+.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEEecccccc----cccceeccCceEEecCCceEEec
Confidence 656665555 45568899999998776543321 12223344456777777887764
No 403
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.69 E-value=0.0028 Score=66.12 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=62.6
Q ss_pred eeecccCCHHHHHHHHHH-------cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHH
Q 002493 647 ELAIQLGRLEVAQEIATE-------VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAE 711 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~-------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~ 711 (915)
.++...++++++.++... -.++..|..+|..+...|+.+.|+++|.++-.. ..++.++...|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 566788999998888765 235678999999999999999999999987422 13344455567766
Q ss_pred HHHHHHHHHHHc----CCc-hHHHHHHHHcCCHHHHHHHHHH
Q 002493 712 GISKLASLAKEQ----GKN-NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 712 ~~~~l~~~~~~~----~~~-~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
.+..+.+..... ... ..-+.+++.+|++++|+.+|.+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 544443333222 121 1223445555666666666554
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.66 E-value=0.61 Score=54.97 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=124.9
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCC--------CEEEEEEeC----------------CCCEEEEEeCCCeEE
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--------PVRSAKFVA----------------RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~g~~dg~i~ 82 (915)
+..|.+++.++.|.-.|..+|+.+..+..... .++.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777889999999999998888764321 123333321 244788999999999
Q ss_pred EEECCCCceeEEEecCCCCEE-------------EEEEcC--CCCEEEEEEc----------CCeEEEEECCCCeeEEEE
Q 002493 83 VYNYNTMDKVKVFEAHTDYIR-------------CVAVHP--TLPYVLSSSD----------DMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~-------------~l~~s~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 137 (915)
-.|.+||+....+.. .+.|. .+.-+| .+..+++|+. +|.|+-+|.++++..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 111112 1335666643 688999999999443333
Q ss_pred eecCCccEEEEEEccCCCCEEEEEECCC-cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002493 138 FEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 138 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
..+.... ... .+ .+.....++.+. ...-+|.+.+.... -.+.. +..+..... ........+.|.-.|.
T Consensus 353 ~~g~p~~-~~~--~~-~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~----~pd~~g~~r--~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 353 DPGNPDP-TAP--PA-PGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQ----TPDQWGGDR--TPADEKYSSSLVALDA 421 (764)
T ss_pred ecCCCCc-ccC--CC-CCCEeccCCCCccCceEEcCCCCeEEE-eCCCc----cccccCCcc--ccCcccccceEEEEeC
Confidence 2221111 100 01 222222222111 22233333221110 00000 111111000 0001122456777888
Q ss_pred CCCcEEEEecCCccCeE---------EEEEeC-CCC---EEEEEEcCCcEEEEeCCCcceeeeee
Q 002493 217 QTKSCVQTLEGHTHNVS---------AVCFHP-ELP---IIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~---------~i~~~~-~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
++|+....++...+.++ -+.+.. +|+ .++.++.+|.+.++|..+|+.+....
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88888877765222211 122322 553 78999999999999999999876554
No 405
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.19 Score=54.27 Aligned_cols=272 Identities=8% Similarity=-0.026 Sum_probs=142.7
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
..+|..+.+...|. +.+|+.+| +..||..+++..+.-.... .+|..+.-+-.| .+.+|+.+| |.+.+..+.+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34677888888775 77787777 7778878887766544332 566666555555 477888877 6666655422211
Q ss_pred EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC--ccEEEEEEccCCCCEEEEEECCCcEEEE
Q 002493 94 VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 94 ~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
... -....|..+.-..+| .+-.|+.+|..+.--.+.+ ........|. +.|.++..+ ....+.+++.+|.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~-Lq~~~~~~~l~~S~vnsL~~D--~dGsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQG-LQIPLSKMHLGVSTVNSLWLD--TDGSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCC-ccccccccCCccccccceeec--cCCCEeeeccCceEEEe
Confidence 111 123345444444444 4667777765433222222 2222222222 223344333 34457777777765543
Q ss_pred ECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCEEEEEE
Q 002493 171 NLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
+- .-.....+....+. +..++..|.....-+-...+-|.+.+-+-.+|..+.+.. .....|+.+++..+| .+-.|+
T Consensus 316 ~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TA-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cc-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 32 11111122222121 122222221111112223333445555555565544432 233567777887755 455566
Q ss_pred cCCcEEEEeCCC-cceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002493 249 EDGTVRIWHATT-YRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
...-+..|+..+ +-...... ...++|..+.-.|+++ |.+|+.+|.+..
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 664466677666 33332222 2346788888888887 888999998876
No 406
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.00053 Score=71.47 Aligned_cols=279 Identities=9% Similarity=0.064 Sum_probs=164.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~ 92 (915)
|-.......|-|.+.-+++++.+..|..|| +.++...... .++....++|..+++.+++. -..+.+.+|++++....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444556678899888899999899999999 5555444443 44566788999888876654 45789999999764322
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc------
Q 002493 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT------ 166 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~------ 166 (915)
..-.+....-.-+.|++.++.++.+...|.+.+++..+. ........|..++++++|.+ .++.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTTQ 187 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhhh
Confidence 111111222233789999999999999999999998776 33334445889999999998 344555544432
Q ss_pred ----EEEEECCCC-----------------------------------------CCceEEecCCCCeeEEEEEeCCCcCE
Q 002493 167 ----IKIWNLGSP-----------------------------------------DPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 167 ----i~i~d~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
+..+..+.. ..-..++...+.+.|+.|.-+|.
T Consensus 188 egeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~--- 264 (615)
T KOG2247|consen 188 EGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY--- 264 (615)
T ss_pred ccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc---
Confidence 223322110 00112333445567777776663
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEe---cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcce--eeeeecCCccEEE
Q 002493 202 LITGSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWA 276 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~ 276 (915)
|..+.+-|.|..-+.++++....+ ..+.+.+.+++.|..-+..++.+ |+.+++-|...-.. ...+.........
T Consensus 265 i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lge 343 (615)
T KOG2247|consen 265 ILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLGE 343 (615)
T ss_pred ccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 777777777776666655432221 13455555555544332233332 33444443221100 0001111122234
Q ss_pred EEEecCCCEEEEEecCCeEEEecCC
Q 002493 277 IGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 277 i~~~~~~~~l~~g~~dg~v~i~~~~ 301 (915)
+.|.-+|++++.++..|...+.+.+
T Consensus 344 ~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 344 IEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred eeeeeccceeeehhccchHHHHHHh
Confidence 5677788888888887777665444
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.55 E-value=0.14 Score=58.70 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=114.2
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCceeEEEec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCee
Q 002493 67 ARKQWVVAGADD------MFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~ 133 (915)
..+..+++|+.+ ..+..||..++.......- +...-.+++.. ++...++|+.| .++..||..++ .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN-Q 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-c
Confidence 345667777766 3678889887755443321 22223344444 45667788877 35778888766 2
Q ss_pred EEE--EeecCCccEEEEEEccCCCCEEEEEECCCc-----EEEEECCCCCCceEEecCCCCeeEEEEEe-CCCcCEEEEE
Q 002493 134 CTQ--IFEGHSHYVMQVTFNPKDTNTFASASLDRT-----IKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (915)
Q Consensus 134 ~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 205 (915)
... .+............ ++.+.++|+.||. +-.||..+.+-...-. ............ ++. +.++|
T Consensus 361 W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~--iYi~G 434 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGK--LYIIG 434 (571)
T ss_pred eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCE--EEEEc
Confidence 332 11111121222222 6889999999864 7778876654322111 111222222222 333 66667
Q ss_pred eCC------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc-----EEEEeCCCcceeee--eecCCc
Q 002493 206 SDD------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-----VRIWHATTYRLENT--LNYGLE 272 (915)
Q Consensus 206 ~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~--~~~~~~ 272 (915)
+.+ .++..||..+++....-.-.......-.-.-++.+.+.||.|+. |..||..+.+-... ......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 644 45788888876543222111111111122235677888887763 67788765543222 221211
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEE
Q 002493 273 RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~g~~dg~v~i 297 (915)
.+. ...-++...++|+.+|.-.+
T Consensus 515 ~~g--~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 515 AVG--VVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccc--EEEECCEEEEEecccCcccc
Confidence 111 12235666777777766554
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.53 E-value=0.65 Score=50.15 Aligned_cols=82 Identities=10% Similarity=0.110 Sum_probs=54.7
Q ss_pred CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEe---CCC--------------cC--EE
Q 002493 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT---GGD--------------KP--YL 202 (915)
Q Consensus 142 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~--------------~~--~l 202 (915)
...+.+++.+| ++++.++...-|.|.++|+.++..++.+++-... .+.|.. .+. .. ++
T Consensus 307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEE
Confidence 34578899999 7888888888899999999988776666543321 111111 111 01 22
Q ss_pred EEEeCCCeEEEEECCCCcEEEEec
Q 002493 203 ITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+-.-.-|.|.||++++|..+..+.
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEE
Confidence 334457889999999888777665
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.0033 Score=59.46 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=48.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCC
Q 002493 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (915)
+..+++|+.+|.|++|.+.........+......|.++.-+-.++++.++++.||.|+.|++.-.+..-....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 456999999999999998732122222222233344444333456689999999999999987666554444444
No 410
>PHA02713 hypothetical protein; Provisional
Probab=96.48 E-value=0.25 Score=56.74 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=94.8
Q ss_pred eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC------CeEEEEECCCCeeEEEE--eecCCccEEEEEE
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTF 150 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~ 150 (915)
.+..||..+++....-.-..... .+++. -++...++|+.+ ..+..||..++ ..... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEEE
Confidence 56778887765432211111111 12222 255566666643 34778898776 22221 11111112 2222
Q ss_pred ccCCCCEEEEEECCC-----cEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEeCC---------------
Q 002493 151 NPKDTNTFASASLDR-----TIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDD--------------- 208 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------------- 208 (915)
. ++.+.+.|+.++ ++..||..+.+-.. .+.........+. -++. +.+.|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~--IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQY--IYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCE--EEEEeCCCccccccccccccccc
Confidence 2 577888888764 47889987653211 1111111111222 2333 56666644
Q ss_pred --------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC------CcEEEEeCCC-cc--eeeeeecCC
Q 002493 209 --------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHATT-YR--LENTLNYGL 271 (915)
Q Consensus 209 --------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~v~iwd~~~-~~--~~~~~~~~~ 271 (915)
..+..||..+.+-...-.-.......-...-++++.+.||.+ ..+..||..+ .+ .+..+....
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 247778877654322111111111111222345666777654 2467888776 33 233332221
Q ss_pred ccEEEEEEecCCCEEEEEecCC
Q 002493 272 ERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 272 ~~v~~i~~~~~~~~l~~g~~dg 293 (915)
. ..-...-+++..++|+.+|
T Consensus 504 ~--~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 S--ALHTILHDNTIMMLHCYES 523 (557)
T ss_pred c--cceeEEECCEEEEEeeecc
Confidence 2 1222223677777787776
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.44 E-value=0.9 Score=43.47 Aligned_cols=205 Identities=11% Similarity=0.114 Sum_probs=112.6
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEE-EecCCCCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCCe-eEEEEe-ec---
Q 002493 70 QWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGW-MCTQIF-EG--- 140 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~--- 140 (915)
.++.+--..|.|.-||+.+.+..+. +.+. +..++.+--.+ .+.+.++..-.|.-||..... .+...+ +-
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444566777788877544322 2222 13333332222 233344443344456532211 112221 11
Q ss_pred -CCccEEEEEEccCCCCEEEEEEC----------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002493 141 -HSHYVMQVTFNPKDTNTFASASL----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 141 -~~~~v~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
...+...-..+| +++++ .|.. .|.++.|-.. ..+..+...-.--+.++|+.+.+. +.++-+.+-
T Consensus 106 ~kknR~NDgkvdP-~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~-fY~iDsln~ 180 (310)
T KOG4499|consen 106 RKKNRLNDGKVDP-DGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKK-FYYIDSLNY 180 (310)
T ss_pred HHhcccccCccCC-CCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcE-EEEEccCce
Confidence 133455566777 67663 3332 2445555432 222222223333467888866553 566667777
Q ss_pred eEEEEE--CCCCc-----EEEEecC---Ccc-CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEE
Q 002493 210 TAKVWD--YQTKS-----CVQTLEG---HTH-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 210 ~i~iwd--~~~~~-----~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
.|.-|| ..+|. .+..++. ... ..-.+++..+|.+.++.-..|+|...|..+|+.+.++..+...+++++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 887787 44443 2333322 111 123456677888888888889999999999999999999999999999
Q ss_pred Eec
Q 002493 279 YMK 281 (915)
Q Consensus 279 ~~~ 281 (915)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 953
No 412
>PRK10115 protease 2; Provisional
Probab=96.42 E-value=3 Score=49.26 Aligned_cols=194 Identities=6% Similarity=-0.003 Sum_probs=100.8
Q ss_pred CEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC------CeEEEEE
Q 002493 59 PVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWD 127 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd 127 (915)
.+..+.|+|+|++|+.+.+ ...|++.|+.+++.+...-... -..++|+++++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999999987744 2378899998886432221111 1469999999877665442 3678888
Q ss_pred CCCCe-eEEEEeecCCccEEEEEEccCCCCEEEEEEC---CCcEEEEECC--CCCCceEEecCCCCeeEEEEEeCCCcCE
Q 002493 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
+.++. ....++........-..+.+.++..++..+. ++.+.+++.. .+.....+. +...+.. .+...++.-+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCCEEE
Confidence 88762 1223343322323322333335665555443 3468888843 333222222 2222221 1222333322
Q ss_pred EEEEeC--CCeEEEEECCC-CcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcEEEEe
Q 002493 202 LITGSD--DHTAKVWDYQT-KSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 202 l~~~~~--dg~i~iwd~~~-~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v~iwd 257 (915)
+.+... ...|...++.. ++....+... ...|..+.++.+ .++++...+|.-+++-
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQ 342 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEE
Confidence 222221 22344445442 2222222321 236788888743 4666666677655544
No 413
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.40 E-value=0.024 Score=67.73 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=78.7
Q ss_pred eeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002493 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~~~~~~~~~ 715 (915)
.++.+.|++++|.++...+.. ...|..|...+.+.|+++.|.+.|.++. -|..++..|...|+.+..++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 567789999999999988754 4589999999999999999999998774 23466677777888777666
Q ss_pred HHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHCC
Q 002493 716 LASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 716 l~~~~~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
+-+...+.|- ++.-...|.+.|++++|.++|.++.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 6665555552 2344556777888888888876554
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.37 E-value=2 Score=46.61 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=86.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-eE--EEEeecCCccEEEEEEc---cC-CCCEEEEEECCCcEEEEECCCCC-------
Q 002493 111 LPYVLSSSDDMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVTFN---PK-DTNTFASASLDRTIKIWNLGSPD------- 176 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~~~---p~-~~~~l~~~~~dg~i~i~d~~~~~------- 176 (915)
...|++||..|.++||+...+. .. ...-..-..+|..+..- +. ....|++ -.-+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3589999999999999986542 11 11111234667777653 22 2334444 446778888873211
Q ss_pred --CceEEecCC--CCeeEEEEEeCCC---cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002493 177 --PNFTLDAHQ--KGVNCVDYFTGGD---KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 177 --~~~~~~~~~--~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
.+..+..|. .....+++-|-|. ..++++-+.||.+.+|+-+.-.....+.. .--...+++++....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111111222 2233444444332 45899999999999999664333333332 122234788888888999998
Q ss_pred CCcEEEEeC
Q 002493 250 DGTVRIWHA 258 (915)
Q Consensus 250 dg~v~iwd~ 258 (915)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 415
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.34 E-value=1.4 Score=47.05 Aligned_cols=211 Identities=16% Similarity=0.227 Sum_probs=93.7
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCC----CceEEec---C----CCCeeEEEEEeCCCcCEEEEEeC------CCeEEEEE
Q 002493 154 DTNTFASAS-LDRTIKIWNLGSPD----PNFTLDA---H----QKGVNCVDYFTGGDKPYLITGSD------DHTAKVWD 215 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~---~----~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd 215 (915)
+.++|++.+ .++.|+++|+.+.- ..+.+.. + -.....+..-|+|+ +++++-. -|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 456666666 57889999987432 2233321 1 11223333445555 5666422 35688888
Q ss_pred CCCCcEEEEecCCcc---CeEEEEEeCCCCEEEEEEc--------------------CCcEEEEeCCCcceeeeeecCCc
Q 002493 216 YQTKSCVQTLEGHTH---NVSAVCFHPELPIIITGSE--------------------DGTVRIWHATTYRLENTLNYGLE 272 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~ 272 (915)
-.+.+.......... --..+.|.|..+.+++... ..++.+||+.+.+.++++.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 887777666654322 2456788898888887542 35799999999999999987653
Q ss_pred c--EEEEEEe--cCCCEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeee
Q 002493 273 R--VWAIGYM--KSSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (915)
Q Consensus 273 ~--v~~i~~~--~~~~~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (915)
. ...+.|. |+...-.+|+. .+.|..|-. +.+|. |....-+. +... -.++-.++..++
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k--------~~~g~--W~a~kVi~---ip~~-----~v~~~~lp~ml~ 305 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK--------DDDGE--WAAEKVID---IPAK-----KVEGWILPEMLK 305 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---------ETTE--EEEEEEEE---E--E-----E--SS---GGGG
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEE--------cCCCC--eeeeEEEE---CCCc-----ccCccccccccc
Confidence 3 4455554 44555444443 222322211 01222 22111111 1110 011121221122
Q ss_pred ecCCcccCCceEEECCCCCEEEEEc--CCcEEEEEeecc
Q 002493 348 ELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAW 384 (915)
Q Consensus 348 ~~~~~~~~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~ 384 (915)
.++....-++.|.+|.|.++|-+++ .|.++.|++...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2333345678999999999999887 999999988754
No 416
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.0011 Score=69.14 Aligned_cols=126 Identities=15% Similarity=0.022 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002493 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+.|+..+..|....+...| +++|+..||..++--+..+-..++.+..-+.++-.+-.||+|.+.+.+
T Consensus 4 ~~~~~~~~~a~~d~~~~~a-------------iriyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le 70 (615)
T KOG2247|consen 4 KVIPCTLTKAQEDFKCVSA-------------IRIYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE 70 (615)
T ss_pred cchhhHHHhhhhhccchHH-------------HHHHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceecc
Confidence 5799999999999999999 677777777666666666666677776666667778899999999999
Q ss_pred CCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCc
Q 002493 749 SNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAE 823 (915)
Q Consensus 749 ~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 823 (915)
.+++-+|+.|+++. . |...+. +|+.-. |..-|-+-.+|++++|.-|.+..+..+|++.-
T Consensus 71 ~n~tg~aldm~wDk-e---------gdvlav-----lAek~~-piylwd~n~eytqqLE~gg~~s~sll~wsKg~ 129 (615)
T KOG2247|consen 71 LNPTGKALDMAWDK-E---------GDVLAV-----LAEKTG-PIYLWDVNSEYTQQLESGGTSSKSLLAWSKGT 129 (615)
T ss_pred cCCchhHhhhhhcc-c---------cchhhh-----hhhcCC-CeeechhhhhhHHHHhccCcchHHHHhhccCC
Confidence 99999999999997 3 444433 444433 77777777788888887777776665555543
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.014 Score=40.74 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce
Q 002493 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM 49 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~ 49 (915)
....|.+++|+|...+||.|..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 4443
No 418
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.075 Score=56.58 Aligned_cols=144 Identities=12% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE-------EEEEEcCCeEEEEECCCCee-EEEEe
Q 002493 68 RKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY-------VLSSSDDMLIKLWDWEKGWM-CTQIF 138 (915)
Q Consensus 68 ~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~ 138 (915)
+.+.|+ ++.....++-.|++.|+.+...+-|.+ |.-+.+.|+.+. -++|-.+..|.-||.+-... .....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 445556788889999999999987776 777888887542 34667788899999884322 22222
Q ss_pred ecC----CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002493 139 EGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 139 ~~~----~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.+| .....|.+-. ...++++||.+|.|++||--.......+++...+|..+..+.+|+ +|+ |..+..+.+.
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK--wil-~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK--WIL-ATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc--EEE-EecccEEEEE
Confidence 223 1224454444 567899999999999999744444556778889999999999998 444 4456677777
Q ss_pred ECC
Q 002493 215 DYQ 217 (915)
Q Consensus 215 d~~ 217 (915)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 754
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=96.20 E-value=2.2 Score=45.48 Aligned_cols=268 Identities=9% Similarity=0.000 Sum_probs=131.5
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE----ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
...+.+|.|.....-+++|. +|.|..=. +.|+.-.... ....++.++.|.++ ..+++| ..|.|.. ..+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCC
Confidence 55789999986666666664 55443321 2232211111 12335778888654 344444 4454322 222233
Q ss_pred eeEEEe---cCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCc
Q 002493 91 KVKVFE---AHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 91 ~~~~~~---~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.-..+. ... .........+ +. +..++..|.|..-+ +.+.............+..+.+.| ++..+ ..+..|.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~v-~~g~~G~ 194 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKYV-AVSSRGN 194 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeEE-EEeCCce
Confidence 222221 111 1222222333 22 33344455544332 233233333333456788899988 55444 4455665
Q ss_pred EEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCC
Q 002493 167 IKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPEL 241 (915)
Q Consensus 167 i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~~ 241 (915)
+..-.-..++.-. ........++.+.+.+++. +++ .+..|.+.+=....|..-..... ....+..+.+.|++
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~--~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN--LWM-LARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC--EEE-EecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 5432112222111 2223446778888888776 444 45567765433344433222211 12357889999987
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeec---CCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002493 242 PIIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~g~~dg~v~i~ 298 (915)
..+++| .+|.+. .....++.-..... -....+.+.+..+++.++ .+..|.|.-+
T Consensus 272 ~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 272 EIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred CEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 765554 566554 34444443333321 123577788776665544 5566766553
No 420
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.20 E-value=0.021 Score=67.13 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCccce---e---eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCC
Q 002493 620 NSVARFLESRGMIEEAIEVA-----TDPDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~-----~~~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (915)
.....++...|.+++|+... .+|... + .+++.+|++++|.+...+. .++..|..+|..+...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34455666778888777653 233322 1 4456889999999887642 457899999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002493 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
++.|..+|.++-... .+..++...|+.+......+.+....-. ..-+.++...|++++|++.|.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999885432 2344556677766555554444332211 2234556667777777777665
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.19 E-value=1.1 Score=45.69 Aligned_cols=145 Identities=10% Similarity=-0.020 Sum_probs=88.3
Q ss_pred CEEEEEEcCCCCeEEEEE---cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCcee
Q 002493 17 RVKSVDLHPSEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKV 92 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd-~~~~~~~ 92 (915)
.+.+.++|++++.+|... ....+.++. .+....... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999887765 233455554 333333222 233678889999987777766666666664 3333322
Q ss_pred -EEEec--CCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCC---C--ee---EEEEeecCCccEEEEEEccCCCCEE
Q 002493 93 -KVFEA--HTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEK---G--WM---CTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 93 -~~~~~--~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~---~--~~---~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
..... -...|+.+.+||||.+++... .++.|.+--+.. + .. ...........+..+.|.+ +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 12221 112899999999999988665 347777765431 1 01 1112222345789999998 66666
Q ss_pred EEEECCC
Q 002493 159 ASASLDR 165 (915)
Q Consensus 159 ~~~~~dg 165 (915)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 6555443
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.28 Score=57.39 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=94.1
Q ss_pred CEEEEEEcCCCCEEEEE--EcCCeEEEEECCCCeeE----EEEee------cCCccEEEEEEccCCCCEEEEEECCCcEE
Q 002493 101 YIRCVAVHPTLPYVLSS--SDDMLIKLWDWEKGWMC----TQIFE------GHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~----~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+|..+..++|+...++. +.+-.|..||+++-... ...+. .......++.|+|.-....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56666777776654443 33447889998753111 11111 12334568889996666778888899999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCCCEE
Q 002493 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELPII 244 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l 244 (915)
+..+........--......++++|+|.|. .+++|...|++.-|-.. ++....+.. ....|.+|+|-....++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccc--eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 987754433322223455678999999998 59999999999988754 443333322 14679999998877666
Q ss_pred EEE
Q 002493 245 ITG 247 (915)
Q Consensus 245 ~~~ 247 (915)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 423
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.94 E-value=0.024 Score=39.63 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
..+|.+++|+|..+.||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4544
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.93 E-value=2.2 Score=43.05 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=126.4
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECC------CCc-eeEEEec-----CCCCEEEEEEcCCCCE------------EE
Q 002493 60 VRSAKFVARKQWVVAGADDMFIRVYNYN------TMD-KVKVFEA-----HTDYIRCVAVHPTLPY------------VL 115 (915)
Q Consensus 60 v~~~~~~~~~~~l~~g~~dg~i~vwd~~------~~~-~~~~~~~-----~~~~i~~l~~s~~~~~------------l~ 115 (915)
-..|+++|.+.+-++....+...+||.+ ..+ .+..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888888888999999986 121 2233331 2346778888754433 67
Q ss_pred EEEcCCeEEEEECCCCee----EEEEee-cCCccE-EEEEEccC-CCCEEE-EEECCCcEEEEECCCCCCce--EE----
Q 002493 116 SSSDDMLIKLWDWEKGWM----CTQIFE-GHSHYV-MQVTFNPK-DTNTFA-SASLDRTIKIWNLGSPDPNF--TL---- 181 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~----~~~~~~-~~~~~v-~~~~~~p~-~~~~l~-~~~~dg~i~i~d~~~~~~~~--~~---- 181 (915)
.+++||+|.-|...-+.. ....+. .....| ..+++-.. .++.|. +--..++|.+||-.-.+... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998643311 111121 111222 33444321 234444 44457899999853322110 01
Q ss_pred -ecCCCCeeE--------EEEEeC-CCcCEEEEEeCCCeEEEEECCCCcEEEEec--CCccCeEEEEEeC------CCCE
Q 002493 182 -DAHQKGVNC--------VDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHP------ELPI 243 (915)
Q Consensus 182 -~~~~~~v~~--------~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~ 243 (915)
.....+.+. +.|... .....=+.|..-|.|-+||+. |+.++.+. +.-..-+.++..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 111111111 111110 000012233445789999976 88888774 2334456777765 4556
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeeecCC------ccEEEEEEec
Q 002493 244 IITGSEDGTVRIWHATTYRLENTLNYGL------ERVWAIGYMK 281 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~i~~~~ 281 (915)
|+---.||+|..||..+++.+..+.... ..+|.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7666679999999999998877776543 3467777755
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.90 E-value=2.1 Score=42.70 Aligned_cols=193 Identities=11% Similarity=0.033 Sum_probs=116.5
Q ss_pred eeEEEec-CCCCEEEEEEcCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEECCCcE
Q 002493 91 KVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 91 ~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+..+.. .......+.|..+|.++-+.+.-| .|+.+|+.++...........-.--.++.. ++.+....=.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeE
Confidence 3444442 233456788877777667776655 799999999854444333332223344444 34455555567899
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc-----cCeEEEEEeCCCC
Q 002493 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPELP 242 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~~~~~ 242 (915)
.+||..+.+.+.++.-. +.-..++ .+++ .|+.......++++|..+.+....+.... ..+.-+.|. +|.
T Consensus 113 f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYP-GEGWGLT--SDGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEETTTTEEEEEEE-S-SS--EEE--ECSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEccccceEEEEEecC-CcceEEE--cCCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 99999988887777643 4446666 3555 46666667899999998877766654322 235556665 555
Q ss_pred EEEEEEcCCcEEEEeCCCcceeeeeec---------------CCccEEEEEEecCCCEEEEEec
Q 002493 243 IIITGSEDGTVRIWHATTYRLENTLNY---------------GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~~g~~ 291 (915)
+.|=.-....|...|..+|+....+.. ...-...|++.|..+.+.+.+.
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 555555566788889999987765421 1245789999998877766554
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.7 Score=51.92 Aligned_cols=200 Identities=8% Similarity=0.051 Sum_probs=104.6
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE--EeecCCccEEEEEEccCCC
Q 002493 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~p~~~ 155 (915)
.-.|+||++. |+.+..+.-..+.+-.|.|+.+. .|++...+|++.+|++-....... .+......|..+.+.. +|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence 4468888864 66665554334478899999776 577778999999999875422111 1122233355555543 23
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEEec-CCCCeeEEEEE--eCCCcCEEEEEeC--CC-eEEEEECCCCcEEEEecCCc
Q 002493 156 NTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYF--TGGDKPYLITGSD--DH-TAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~l~~~~~--dg-~i~iwd~~~~~~~~~~~~~~ 229 (915)
+++-..+|++.+-.-.+.....++.. ......+.+|. +++....++..-. .+ .+..-+..+. ....+....
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~~ 216 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWPN 216 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCCC
Confidence 44444456655443222112222222 11112222332 2222112211110 00 0111111111 122233234
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCC
Q 002493 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSS 283 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~ 283 (915)
+.+..+..||++++|+--...|.|.+-+....+....+.... .....++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 668889999999999999999999999888777766665321 222356665544
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.85 E-value=3.1 Score=44.26 Aligned_cols=234 Identities=12% Similarity=0.141 Sum_probs=119.0
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce---eEEEE----ecCCCEEEEEEeCC---CCEEEEEeC-C-------
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM---AKSFE----VTELPVRSAKFVAR---KQWVVAGAD-D------- 78 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~---~~~~~----~~~~~v~~~~~~~~---~~~l~~g~~-d------- 78 (915)
..++|+|.|||..+ ++...|.|++++ ..+.. +..+. ........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~-v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLL-VAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEE-EEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEE-EEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 46899999998755 456699999999 55544 22221 13456799999994 334443322 1
Q ss_pred -CeEEEEECCCC-------cee-EEEec---CCCCEEEEEEcCCCCEEEEEEcC-------------CeEEEEECCCCe-
Q 002493 79 -MFIRVYNYNTM-------DKV-KVFEA---HTDYIRCVAVHPTLPYVLSSSDD-------------MLIKLWDWEKGW- 132 (915)
Q Consensus 79 -g~i~vwd~~~~-------~~~-~~~~~---~~~~i~~l~~s~~~~~l~~~~~d-------------g~i~iwd~~~~~- 132 (915)
..|.-|....+ +.+ ..+.. ....-..|.|.|+|.+.++.+.. |.|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24544544433 111 11222 22345679999999655554432 334444433210
Q ss_pred -----------eEEEEeecCCccEEEEEEccCCCCEEEEEE-CCCcEEEEECCCC-------------------------
Q 002493 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSP------------------------- 175 (915)
Q Consensus 133 -----------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~------------------------- 175 (915)
.....-.++.. ...++|+|..+.++++=. .++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111122333 468999994355554321 1222222222111
Q ss_pred ----CCceEEecCCCCeeEEEEEeCCC-----cCEEEEEeCCCeEEEEECCCCcEEE---E-ecCCccCeEEEEEeCCCC
Q 002493 176 ----DPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKSCVQ---T-LEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 176 ----~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~i~~i~~~~~~~ 242 (915)
.+...+. +...+..+.|..... +.++++....+.|....+..+..+. . +......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 1223333 334566677765432 2255555556788888876543322 2 233444799999999998
Q ss_pred EEEEEEcCCcEE
Q 002493 243 IIITGSEDGTVR 254 (915)
Q Consensus 243 ~l~~~~~dg~v~ 254 (915)
+.++...+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877788764
No 428
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.017 Score=59.63 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcc------------hhHHHHHhcCCHHHHHHHHHHHHHcC-----CchHHH
Q 002493 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS------------GLLLLYSSLGDAEGISKLASLAKEQG-----KNNVAF 730 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~------------~l~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~a~ 730 (915)
-..|+.=|..+-++|++..|.+||..+-..+ +...++..+|....-..-.+.+...+ -..+++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 3589999999999999999999999875432 22333334444222111111221111 146788
Q ss_pred HHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC--------------hhhhhhcCCCccCC
Q 002493 731 LCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--------------PKAAESLADPEEYS 796 (915)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~~~~~~~~~~~~~~~L~~~~--------------~~~a~~l~~~~~~~ 796 (915)
.|++-++++++|++-|.++-+...-.+.+|++...+...=..+|+.|....+ +|+|-... |..+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~H-pd~~- 406 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHH-PDKN- 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC-CCcC-
Confidence 8999999999999999988777777677777653222222235555553221 12222222 2221
Q ss_pred CccccHHHHHHHHHHHhhccCCCCCCccccc
Q 002493 797 NLFDDWQVALAVESKAAATRGVHPPAEDYVN 827 (915)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (915)
. ..++|+|..|++...+|....++.+
T Consensus 407 ---a--gsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 407 ---A--GSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred ---c--chhHHHHHHHHHHHHHHHHhcCHHH
Confidence 1 1268999999999999988888854
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.80 E-value=1.5 Score=51.76 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEecCCCC--------eeEEEEEeC--------------CCcCEEEEEeCCCeEE
Q 002493 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG--------VNCVDYFTG--------------GDKPYLITGSDDHTAK 212 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~~~~~dg~i~ 212 (915)
++.+++++.++.|.-.|..+++.+.++...... ...+.+... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446666677788888888888777666432211 122333321 1122588888999999
Q ss_pred EEECCCCcEEEEecCCccCe-------------EEEEEeC--CCCEEEEEEc----------CCcEEEEeCCCcceeeee
Q 002493 213 VWDYQTKSCVQTLEGHTHNV-------------SAVCFHP--ELPIIITGSE----------DGTVRIWHATTYRLENTL 267 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i-------------~~i~~~~--~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~ 267 (915)
-.|.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|..+|+++..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 1111 0111112 1235666643 688999999999998877
Q ss_pred ec
Q 002493 268 NY 269 (915)
Q Consensus 268 ~~ 269 (915)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 430
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.77 E-value=0.062 Score=65.79 Aligned_cols=130 Identities=11% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc------CChhHHHHHHHHHHH
Q 002493 619 HNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV------QSESKWKQLGELAMS 680 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~------~~~~~w~~la~~al~ 680 (915)
++.+...+-+.|..+.|.++...... . ...+.+.|++++|.++...+ .+...|..|-..+.+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35555566666666666555432211 0 13455666666666666554 234566666666666
Q ss_pred cCChhhHHHHHHHcCC-----------cchhHHHHHhcCCHHHHHHHHHHHHHcCC------chHHHHHHHHcCCHHHHH
Q 002493 681 TGKLEMAEGCMKQAMD-----------LSGLLLLYSSLGDAEGISKLASLAKEQGK------NNVAFLCLFMLGKLEDCL 743 (915)
Q Consensus 681 ~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~g~~~~a~ 743 (915)
.|+++.|.+.|..+.. |..++..|...|+.+...++-+.....|- ++.....|.+.|++++|.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 6777777666665531 23455556666666655555555544442 233334445556666665
Q ss_pred HHHHH
Q 002493 744 QLLVE 748 (915)
Q Consensus 744 ~l~~~ 748 (915)
++|.+
T Consensus 635 ~lf~e 639 (1060)
T PLN03218 635 SIYDD 639 (1060)
T ss_pred HHHHH
Confidence 55543
No 431
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.68 E-value=0.13 Score=63.13 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=97.8
Q ss_pred ccCHHHHhhhcCCCCcc---hHHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc
Q 002493 601 RGDLERANEILPSIPKE---HHNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~~~~i~~~---~~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~ 665 (915)
.+.+++|..+++.++.+ .++.+...+-+.+..+.|.++...... . ...+.+.|++++|.++..++
T Consensus 419 ~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45566665554444332 235555666677777777765432211 1 25677899999999998876
Q ss_pred C------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC---------cchhHHHHHhcCCHHHHHHHHHHHHHc--CC---
Q 002493 666 Q------SESKWKQLGELAMSTGKLEMAEGCMKQAMD---------LSGLLLLYSSLGDAEGISKLASLAKEQ--GK--- 725 (915)
Q Consensus 666 ~------~~~~w~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~l~~~~~~~--~~--- 725 (915)
. +...|..|-..+.+.|+++.|.++|..+.. |..++..|...|+.+...++-+..... |-
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 4 567899999999999999999999988742 457778888888877666554444332 11
Q ss_pred ---chHHHHHHHHcCCHHHHHHHHHH
Q 002493 726 ---NNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 726 ---~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
++.-..+|...|++++|.++|.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22333456667888877776643
No 432
>PLN03077 Protein ECB2; Provisional
Probab=95.67 E-value=0.087 Score=64.75 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=79.3
Q ss_pred eeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002493 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~~~~~~~~~ 715 (915)
.++.+.|++++|.++...+.. ...|..+...+.+.|+++.|.+.|.++. .|..++..+...|+.+...+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 566788999999999887754 4479999999999999999999998763 34466667777888887777
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHCCCc
Q 002493 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVESNRI 752 (915)
Q Consensus 716 l~~~~~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~~~~ 752 (915)
+-+.+...|-. +.-...|.+.|++++|.++|.++...
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 77777666643 22335577788888888887766543
No 433
>PHA03098 kelch-like protein; Provisional
Probab=95.34 E-value=0.47 Score=54.75 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=86.4
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCee
Q 002493 67 ARKQWVVAGADDM------FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~g~~dg------~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 133 (915)
.++..++.|+.++ .+..||..+.+....-.. .......+. -++...+.|+.+ ..+..||..++ .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 4566677776532 577888877655322111 111112222 256666777654 35778888765 2
Q ss_pred EEEEee-cCCccEEEEEEccCCCCEEEEEECC------CcEEEEECCCCCCceE--EecCCCCeeEEEEEeCCCcCEEEE
Q 002493 134 CTQIFE-GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 134 ~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
....-. .+...-.+++.. ++.+++.|+.+ ..+..||+.+.+-... +...... .++. ..++. +++.
T Consensus 370 W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~--iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGK--IYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCE--EEEE
Confidence 222111 111111122222 56777777742 3578888876532211 1101111 1222 22333 5566
Q ss_pred EeCC--------CeEEEEECCCCcEEEE--ecCCccCeEEEEEeCCCCEEEEEEcC-----CcEEEEeCCCc
Q 002493 205 GSDD--------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (915)
Q Consensus 205 ~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 261 (915)
|+.+ ..+.+||..+++-... +.........+. -++.+++.||.+ +.|.+||..+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 6532 2388888876653321 111111111222 256666777654 35667776543
No 434
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.33 E-value=0.16 Score=60.77 Aligned_cols=154 Identities=20% Similarity=0.139 Sum_probs=88.7
Q ss_pred ccCHHHHhhhcCCCCcc---hHHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc
Q 002493 601 RGDLERANEILPSIPKE---HHNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~~~~i~~~---~~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~ 665 (915)
.|++++|.+++..++.. +++.++.-+-+.|+.++|+++...... . +..+...|++++|.++...+
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 56677776666554432 335666666677777777665433211 1 13344667777777776654
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC------cchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002493 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAMD------LSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...|..+.+.+.+.|+++.|.+.|.++.. |..++..++..|+.+..+.+++.....+-.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~------ 526 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE------ 526 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC------
Confidence 2 123566777777777777777777766543 233344444455544333333322211111
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002493 733 LFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~lar~~ 762 (915)
..+.|.-.+++|.+.|+|++|.++.+..
T Consensus 527 --~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 527 --KLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred --CCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1245667788899999999998887754
No 435
>PHA03098 kelch-like protein; Provisional
Probab=95.32 E-value=0.76 Score=53.05 Aligned_cols=146 Identities=10% Similarity=0.045 Sum_probs=69.7
Q ss_pred CCeEEEEEcC------CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceeEEE
Q 002493 27 EPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 27 ~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~ 95 (915)
+..++.|+.+ ..+..||..+.+....-.............-++..++.|+.+ ..+..||..+.+....-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455566543 247788877665432111111111111122367777788764 35778888776543221
Q ss_pred ec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCeeEEEEee-cCCccEEEEEEccCCCCEEEEEECCC--
Q 002493 96 EA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDR-- 165 (915)
Q Consensus 96 ~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg-- 165 (915)
.. +...-.+++. -++...+.|+.+ ..+..||+.++ .....-. .....-.++... ++.+++.|+.++
T Consensus 375 ~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYID 450 (534)
T ss_pred CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecCCCCccccCceEEEE--CCEEEEECCccCCC
Confidence 11 1111112222 245566666632 45888998865 2222111 001111122222 466777776432
Q ss_pred ------cEEEEECCCCC
Q 002493 166 ------TIKIWNLGSPD 176 (915)
Q Consensus 166 ------~i~i~d~~~~~ 176 (915)
.+.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 37888887654
No 436
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.10 E-value=0.22 Score=54.82 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHHHhCCChhhhhhcccCc-----cce------eeeecccCCHHHHHHHHHHcCC----------hhHHHHHHHHHH
Q 002493 621 SVARFLESRGMIEEAIEVATDP-----DYR------FELAIQLGRLEVAQEIATEVQS----------ESKWKQLGELAM 679 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~~~~-----~~~------f~~~l~l~~~~~A~~~a~~~~~----------~~~w~~la~~al 679 (915)
.++..+...|.++.|+...... ... -.++.+.|++++|.++.+.+.. ...|..+|..+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3345556666666665543211 111 1345567777777777654311 113456677777
Q ss_pred HcCChhhHHHHHHHcC
Q 002493 680 STGKLEMAEGCMKQAM 695 (915)
Q Consensus 680 ~~~~~~~A~~~y~~~~ 695 (915)
..++++.|+++|.++-
T Consensus 192 ~~~~~~~A~~~~~~al 207 (389)
T PRK11788 192 ARGDLDAARALLKKAL 207 (389)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 7777777777777653
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.09 E-value=6.1 Score=46.45 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=49.6
Q ss_pred ccEEEEEEccCCCCEEEEEECCCcEEEEECCC-CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002493 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 143 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
-.|..+..+| ++..++..|..| |.|-.+.. ......+.+....+.|-.+.-+.. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~------------------ 141 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FF------------------ 141 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hc------------------
Confidence 3577888888 788888777654 44444422 111112222222333322211111 10
Q ss_pred EEEecCCccCeEEEEEeCC---CCEEEEEEcCCcEEEEeCCCcc
Q 002493 222 VQTLEGHTHNVSAVCFHPE---LPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 222 ~~~~~~~~~~i~~i~~~~~---~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
.......|..+.|+|. +..|++-..|+++|+||+...+
T Consensus 142 ---~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 ---TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ---cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 0112345667788875 3677777778888888876433
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.03 E-value=10 Score=44.88 Aligned_cols=99 Identities=11% Similarity=0.162 Sum_probs=61.2
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEE---ecCCCEEEEEEeCCC------CEEEEEeCCCeEEEEECCCCceeEEEe--
Q 002493 28 PWILASLYSGTVCIWNYQSQTMAKSFE---VTELPVRSAKFVARK------QWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~------~~l~~g~~dg~i~vwd~~~~~~~~~~~-- 96 (915)
..++++..+|.+..+..........+. .-...|.|+++.+++ ++++.++.|+.++++.+.....+..+.
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 346666667766655543322223332 234578899988764 679999999999999998666666553
Q ss_pred cCCCCEEEEEEc---CCC------CEEEEEEcCCeEEEE
Q 002493 97 AHTDYIRCVAVH---PTL------PYVLSSSDDMLIKLW 126 (915)
Q Consensus 97 ~~~~~i~~l~~s---~~~------~~l~~~~~dg~i~iw 126 (915)
+-+.++.++.+- .++ -+|.+|-.+|.+.-.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 334444444442 233 256677777766544
No 439
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.92 E-value=0.19 Score=59.05 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002493 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
.+|++++|....+.. .++..|..+|..+...|+++.|+++|.++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444444444321 22344444555555555555555554443
No 440
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.89 E-value=0.18 Score=57.68 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCch
Q 002493 653 GRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNN 727 (915)
Q Consensus 653 ~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~ 727 (915)
|++++|.+++.++ .++..|..||+.+.+.|+++.|..|.. +-.+...+|.+.+..+++.+...|.++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l--------lAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--------LAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH--------HHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 6677776666543 345677778887777777777755443 233445667777777777777777777
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHCCCchHHHHHHHhc
Q 002493 728 VAFLCLFML--------GKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 728 ~a~~~~~~~--------g~~~~a~~l~~~~~~~~~A~~lar~~ 762 (915)
.|..||-.. .-+-+=..||.++|...+|++-.+..
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 777776553 11355567777777777777544443
No 441
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.88 E-value=7.2 Score=42.46 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=107.9
Q ss_pred eEEEEEcCCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEE
Q 002493 29 WILASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCV 105 (915)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l 105 (915)
.+.++..+|.|.-.|..++..+....... ..+.+-.+..+|+ |++++.+|.+..+|..+|+......... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35555678888888888887664433221 2222223333665 8888889999999998999988887655 111122
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC--CccEEEEEEccCCCCEEEEEEC--CCcEEEEECCCCCCceEE
Q 002493 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 181 (915)
..-.++ .+..++.+|.+...|..++...-...... ...+..-.. . ....+..+.. ++.+.-.|..++......
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222233 34455577888888888773322211110 111111111 1 2344555554 556777777777665543
Q ss_pred ec----CCC------CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 002493 182 DA----HQK------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 182 ~~----~~~------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.. ... .+..-...-++ -+..++.++.+...|..+++.+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 21 111 11111111122 2567778888999999999998888753
No 442
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.85 E-value=0.15 Score=56.30 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=72.9
Q ss_pred HHHHHHHHhCCChhhhhhcccC----ccc----e-------eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHH
Q 002493 620 NSVARFLESRGMIEEAIEVATD----PDY----R-------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAM 679 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~~----~~~----~-------f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al 679 (915)
..++.++...|..+.|+..... +.. . -..+...|+++.|.++..+. .....+..++..+.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 3445566667777776654321 110 0 13445678888888877654 23456778888888
Q ss_pred HcCChhhHHHHHHHcCCcc-------------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHH
Q 002493 680 STGKLEMAEGCMKQAMDLS-------------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLED 741 (915)
Q Consensus 680 ~~~~~~~A~~~y~~~~d~~-------------~l~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~g~~~~ 741 (915)
..|+++.|.++|.++.... .+..++...|+.+......+.+...... ...+.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888887663221 2233344566655554444433322211 122344555666666
Q ss_pred HHHHHHHC
Q 002493 742 CLQLLVES 749 (915)
Q Consensus 742 a~~l~~~~ 749 (915)
|+++|.+.
T Consensus 233 A~~~~~~~ 240 (389)
T PRK11788 233 AIEALERV 240 (389)
T ss_pred HHHHHHHH
Confidence 66666654
No 443
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.2 Score=52.72 Aligned_cols=87 Identities=26% Similarity=0.296 Sum_probs=58.2
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc-----
Q 002493 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML----- 736 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----- 736 (915)
-.++.+|-.||+-+++.++++.|++||.++ +|..+.+ +.+||++-++.++.+.|..+|.+.
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~-----------l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA-----------LVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999986 4443322 455666666666666666665542
Q ss_pred --CCHHH--------HHHHHHHCCCchHHHHHHHhc
Q 002493 737 --GKLED--------CLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 737 --g~~~~--------a~~l~~~~~~~~~A~~lar~~ 762 (915)
|..++ -++.|.+++.|++|-.+|...
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 22211 234566777777776655443
No 444
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.75 E-value=5.5 Score=40.50 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=84.7
Q ss_pred CEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE-CCCCeeE
Q 002493 59 PVRSAKFVARKQWVVAGA---DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEKGWMC 134 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~ 134 (915)
.+.+.+++++++.++... ....+.++... ....... ....+..-.|++++...+....+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 33456666543 3322221 223678889999987776666666666663 2232122
Q ss_pred EEEee-c-CCccEEEEEEccCCCCEEEEEE---CCCcEEEEECC---CCCC------ceEEecCCCCeeEEEEEeCCCcC
Q 002493 135 TQIFE-G-HSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLG---SPDP------NFTLDAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 135 ~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~---~dg~i~i~d~~---~~~~------~~~~~~~~~~v~~~~~~~~~~~~ 200 (915)
..... . ....|..+.++| |+..++... .++.|.+--+. .+.+ ..........+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-- 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-- 178 (253)
T ss_pred eEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE--
Confidence 11111 1 112799999999 777776655 24667666542 2211 111223346788999998876
Q ss_pred EEEEEe
Q 002493 201 YLITGS 206 (915)
Q Consensus 201 ~l~~~~ 206 (915)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 444443
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.57 E-value=8.3 Score=41.87 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=77.0
Q ss_pred CEEEEEEeCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002493 59 PVRSAKFVARKQWVVAGA-----------DDM-FIRVYNYNT--MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.......+.|++.+++ |++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 457789999998776643 223 677776432 22 234444444567889999988 444544433
Q ss_pred EEEEECCCC-------eeEEEEeec----CCccEEEEEEccCCCCEEEEEECC-------------------CcEEEEEC
Q 002493 123 IKLWDWEKG-------WMCTQIFEG----HSHYVMQVTFNPKDTNTFASASLD-------------------RTIKIWNL 172 (915)
Q Consensus 123 i~iwd~~~~-------~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d-------------------g~i~i~d~ 172 (915)
.++.|.+.. ..+...+.. +.+....+.|.| ++.+.++-+.. |.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 334354321 112222222 234477899999 77666554421 34555555
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002493 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
.+++. ..+.........++|++.++ ++++
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~--l~~t 200 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGD--VFFC 200 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCC--EEEE
Confidence 54432 22222233346788988776 4444
No 446
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.55 E-value=0.41 Score=52.35 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=40.0
Q ss_pred eeecccCCHHHHHHHHHHc---C--ChhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002493 647 ELAIQLGRLEVAQEIATEV---Q--SESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~---~--~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
..+-..|.++.|....++. + =+.....||.+.-..|++..|+.||.++-
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 6677889999888877643 2 26788899999999999999999999875
No 447
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.50 E-value=0.31 Score=57.44 Aligned_cols=149 Identities=9% Similarity=-0.004 Sum_probs=79.0
Q ss_pred HccCHHHHhhhcCCC----Ccch--HHHHHHHHHhCCChhhhhhcc-----cCccce------eeeecccCCHHHHHHHH
Q 002493 600 MRGDLERANEILPSI----PKEH--HNSVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIA 662 (915)
Q Consensus 600 ~~~~~~~a~~~~~~i----~~~~--~~~~~~~~~~~~~~~~al~~~-----~~~~~~------f~~~l~l~~~~~A~~~a 662 (915)
..|++.+|..++..+ |... ...+..-....|..+.|++.. .+|+.. -.++.+.|++++|.+.+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 367777765554333 1111 112222223466666666542 233322 14566778888887776
Q ss_pred HHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCC----cch---hHHHHHhcCCHHHHHHHHHHHHHcCC-c---
Q 002493 663 TEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD----LSG---LLLLYSSLGDAEGISKLASLAKEQGK-N--- 726 (915)
Q Consensus 663 ~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d----~~~---l~~l~~~~~~~~~~~~l~~~~~~~~~-~--- 726 (915)
.+. ++...|..+|..+...|+++.|..+|.+.-. ... ....+...|+.+......+.+..... .
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 542 3456788888888888888888888865421 110 11224456665554444333322211 1
Q ss_pred --hHHHHHHHHcCCHHHHHHHHHH
Q 002493 727 --NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 727 --~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
.....++...|++++|+..|.+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1224455567777777766543
No 448
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.44 E-value=0.19 Score=47.68 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------hhHHHHHhcCCHHHHHHHHHHH----HHcCCch-----
Q 002493 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----------GLLLLYSSLGDAEGISKLASLA----KEQGKNN----- 727 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~~~~~l~~~~----~~~~~~~----- 727 (915)
...|..+|+++.+.|+++.|.+||.++.++- .++++....+|...+......+ ...|+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999999884 5667777788877776543333 2222221
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHCC
Q 002493 728 --VAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 728 --~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
..+..++..++|.+|.++|+++.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 23344555688999999988775
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=94.42 E-value=1.6 Score=49.38 Aligned_cols=180 Identities=9% Similarity=0.051 Sum_probs=84.0
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC--CeEEEEECCCC-eeEEEEe
Q 002493 68 RKQWVVAGADDM-----FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD--MLIKLWDWEKG-WMCTQIF 138 (915)
Q Consensus 68 ~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~ 138 (915)
++..+++|+.++ .+..||..+++....-.-..... .+++ .-++...++|+.+ ..+..||..++ |.....+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455667777542 56778887765433221111111 1222 2356666677653 35788887655 2222222
Q ss_pred ecCCccEEEEEEccCCCCEEEEEECCC---cEEEEECCCCCCceE--EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002493 139 EGHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 139 ~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
....... +++.. ++.+.++|+.++ .+..||..+.+-... +...... .+++ ..++. +.+.| |.+.+
T Consensus 350 ~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~--IYv~G---G~~e~ 419 (480)
T PHA02790 350 LKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRR--LFLVG---RNAEF 419 (480)
T ss_pred CCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCE--EEEEC---CceEE
Confidence 1111111 22222 577888887654 467788765432111 0001111 1222 22333 44555 35778
Q ss_pred EECCCCcEEEE--ecCCccCeEEEEEeCCCCEEEEEEcC-----CcEEEEeCCC
Q 002493 214 WDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATT 260 (915)
Q Consensus 214 wd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~ 260 (915)
||..+++-... +....... +++ .-++++.++||.+ ..+..||..+
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 88876553321 11111112 222 2356677777754 2355555544
No 450
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=0.45 Score=55.74 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=85.7
Q ss_pred EEEEEEccCCCCEEE--EEECCCcEEEEECCCCCCce-----EE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeE
Q 002493 145 VMQVTFNPKDTNTFA--SASLDRTIKIWNLGSPDPNF-----TL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 145 v~~~~~~p~~~~~l~--~~~~dg~i~i~d~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
+..+..++ |....+ ..+.+-.|..||++...... -+ .....-..++.|.|.-.. ..++...|+.|
T Consensus 103 i~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl 180 (1405)
T KOG3630|consen 103 IVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSL 180 (1405)
T ss_pred ceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccch
Confidence 44444455 433332 33334468899986532111 11 112233457788876543 35667778888
Q ss_pred EEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec----CCccEEEEEEecCCCEE
Q 002493 212 KVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRI 286 (915)
Q Consensus 212 ~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l 286 (915)
++..+.... .+..+. .....++++|+|.|+.+++|-.+|++.-|... ++....+.. ...+|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 887765322 222222 45568999999999999999999999998743 333333222 14689999998876666
Q ss_pred EE
Q 002493 287 VI 288 (915)
Q Consensus 287 ~~ 288 (915)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 451
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.32 E-value=0.19 Score=52.27 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHH----HHHHHHHHHHcCCchHH
Q 002493 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEG----ISKLASLAKEQGKNNVA 729 (915)
Q Consensus 654 ~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~----~~~l~~~~~~~~~~~~a 729 (915)
++++|..+ ..+.|..+-..++++.|.+||.++. .++...++... ....+++.... +...|
T Consensus 30 ~~e~Aa~~---------y~~Aa~~fk~~~~~~~A~~ay~kAa------~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADL---------YEKAANCFKLAKDWEKAAEAYEKAA------DCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHH---------HHHHHHHHHHTT-CHHHHHHHHHHH------HHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHH---------HHHHHHHHHHHhccchhHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 46666554 4677777888888888888888763 33444444221 22233333222 44444
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHH----HHHHhcCCc--hHHHHHHHHHHhhh
Q 002493 730 FLCLFMLGKLEDCLQLLVESNRIPEAA----LMARSYLPS--KVSEIVAIWRKDLQ 779 (915)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~----~lar~~~~~--~~~~~~~~~~~~L~ 779 (915)
..+ +++|+++|.+.|++..|+ .+++-|... .....++.|++.+.
T Consensus 94 i~~------~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 94 IEC------YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHH------HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433 366777777777777775 344445444 55666666666653
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.23 E-value=7.1 Score=39.58 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=121.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECC-------CCceeEEEEe-----cCCCEEEEEEeCCCC------------EEE
Q 002493 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ-------SQTMAKSFEV-----TELPVRSAKFVARKQ------------WVV 73 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~-------~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 73 (915)
-..|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999877776668899999986 1223333332 134577888875433 367
Q ss_pred EEeCCCeEEEEECCCCce-----eEEEe-cCCCC-EEEEEEcC--CCCEEEEE-EcCCeEEEEECCCCeeEEEE---eec
Q 002493 74 AGADDMFIRVYNYNTMDK-----VKVFE-AHTDY-IRCVAVHP--TLPYVLSS-SDDMLIKLWDWEKGWMCTQI---FEG 140 (915)
Q Consensus 74 ~g~~dg~i~vwd~~~~~~-----~~~~~-~~~~~-i~~l~~s~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~ 140 (915)
.+++||+|.-|+..-+.. ...+. ...+. -..+++-. .+.+|..+ -..++|.++|-.=. .... +..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCccC
Confidence 788999999998532211 12222 11222 23455543 34555544 34688888874322 1111 000
Q ss_pred ----------------CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCC----C
Q 002493 141 ----------------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGG----D 198 (915)
Q Consensus 141 ----------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~----~ 198 (915)
..-.|+-..-.+ +...=+.|..-|.|-+||+. ++.++++. +.-...+.++..|.. .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000111111122 11222233345789999974 45566553 222334566665531 1
Q ss_pred cCEEEEEeCCCeEEEEECCCCcEEEEecCCcc------CeEEEEEeC
Q 002493 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHP 239 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~i~~~~ 239 (915)
+.+|+--..||+|..||..+++.+-.+....+ .++.+.|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 22666667899999999998987777765433 356677755
No 453
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.22 E-value=0.61 Score=42.44 Aligned_cols=106 Identities=15% Similarity=0.188 Sum_probs=67.7
Q ss_pred HHHHHHHhCCChhhhhhcc-cCcccee----eeecccCCHHHHHHHHHH---cC--ChhHHHHHHHHHHHcCChhhHHHH
Q 002493 621 SVARFLESRGMIEEAIEVA-TDPDYRF----ELAIQLGRLEVAQEIATE---VQ--SESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~-~~~~~~f----~~~l~l~~~~~A~~~a~~---~~--~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
.+..|+..-|-......+. .+....+ ....+.|++++|.++.+. ++ +..-|-.||-.+-..|+++.|..|
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444555544444444333 2222221 233567888888777653 33 467899999999999999999999
Q ss_pred HHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002493 691 MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 691 y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
|.++.-++ ..|+.- .--++.|++.+|+.+.|.+.|.
T Consensus 92 Y~~A~~L~--------~ddp~~-------------~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 92 YGRAAQIK--------IDAPQA-------------PWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHhcC--------CCCchH-------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 99875432 122221 1236678888999999988876
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=94.20 E-value=1.8 Score=48.94 Aligned_cols=143 Identities=9% Similarity=-0.059 Sum_probs=67.9
Q ss_pred CCeEEEEEcCC-----cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCceeEEEecCC
Q 002493 27 EPWILASLYSG-----TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVKVFEAHT 99 (915)
Q Consensus 27 ~~~la~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~ 99 (915)
+..+++|+.++ .+..||..+++....-.............-++...++|+.+ ..+..||..+++....-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 44456666432 47778877654332211111111111123467777788753 357788876654432211111
Q ss_pred CCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCeeEEEE--eecCCccEEEEEEccCCCCEEEEEECCCcEEEEECCC
Q 002493 100 DYIRCVAVHPTLPYVLSSSDD---MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
.........-+|+..++|+.+ ..+..||.+++ ..... ..........+.+ ++.+.+.| |.+.+||..+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALVF---GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEEE---CCEEEEEC---CceEEecCCC
Confidence 111111122256666676654 34678888765 33221 1111111122222 45666666 4577888866
Q ss_pred CC
Q 002493 175 PD 176 (915)
Q Consensus 175 ~~ 176 (915)
++
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 54
No 455
>PLN03077 Protein ECB2; Provisional
Probab=94.18 E-value=0.28 Score=60.32 Aligned_cols=156 Identities=19% Similarity=0.103 Sum_probs=107.8
Q ss_pred HccCHHHHhhhcCCCCcc--hHHHHHHHHHhCCChhhhhhcccC-------ccce-e----eeecccCCHHHHHHHHHHc
Q 002493 600 MRGDLERANEILPSIPKE--HHNSVARFLESRGMIEEAIEVATD-------PDYR-F----ELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 600 ~~~~~~~a~~~~~~i~~~--~~~~~~~~~~~~~~~~~al~~~~~-------~~~~-f----~~~l~l~~~~~A~~~a~~~ 665 (915)
..|.+++|..++..++.. .++.+..-+-+.|+.++|+++.+. |+.. | ..+...|++++|+++...+
T Consensus 536 k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 367888887777665332 246777777888999998887543 2221 2 4455779999999998765
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcC------CcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002493 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAM------DLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...+..+.+.+.+.|+++.|++.+.++. -|..|+..|+..++.+..+.+++...+.+-.+.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---- 691 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---- 691 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc----
Confidence 4 34578899999999999999999999874 133455566667776665555554444333332
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002493 733 LFMLGKLEDCLQLLVESNRIPEAALMARSYL 763 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~lar~~~ 763 (915)
+-+---..+|.+.|+|++|..+++...
T Consensus 692 ----~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 692 ----GYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred ----chHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 234446678999999999998887653
No 456
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.17 E-value=15 Score=43.22 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=55.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCcee---EEE--------ecCCCCEEEEEEcCC---CCEEE
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYN---------TMDKV---KVF--------EAHTDYIRCVAVHPT---LPYVL 115 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~---------~~~~~---~~~--------~~~~~~i~~l~~s~~---~~~l~ 115 (915)
.|..+..+|+|+.++..+..|...+.=.. .|+.. +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58889999999999999887754443211 12211 111 134457899999996 57899
Q ss_pred EEEcCCeEEEEECCCCeeEEEEe
Q 002493 116 SSSDDMLIKLWDWEKGWMCTQIF 138 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~ 138 (915)
+-+.|+++++||+.....+.+++
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEecCCEEEEEecCCCCCCeEEE
Confidence 99999999999998654444443
No 457
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=2 Score=52.49 Aligned_cols=231 Identities=11% Similarity=0.120 Sum_probs=110.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
......++|+|....+|.+..+|.|++|-...-+......... ..+..+.|........+...+..+.+|.......+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 3467789999999999999999999999843322221111110 122223333222333344445556666543221111
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEE-EEccCC-CCEEEEEECCCcEEEEE
Q 002493 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV-TFNPKD-TNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~p~~-~~~l~~~~~dg~i~i~d 171 (915)
+...+++..-.+--.. +.| ..+.+++||+.-.......+.+-...-... .+.+.. .-..... +-.-..|.
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~ 186 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI--DLDTVLIS 186 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc--ccccceee
Confidence 1222333322222223 444 778888888764311111111111100000 010000 0000000 00111111
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002493 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
+... . ..+..+...+.+..+..... +..+...+.+.+|+.........+. +....+++++..++++..||
T Consensus 187 ~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dg 256 (993)
T KOG1983|consen 187 LPDA-Y-LGLSLIEYESLQVLYYSPTK---ILIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDG 256 (993)
T ss_pred cccc-c-ccccccccccceeeeecCCC---cceeeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecC
Confidence 1111 1 22334455566666655544 5666667777777754332222222 11122288899999999999
Q ss_pred cEEEEeCCCcce
Q 002493 252 TVRIWHATTYRL 263 (915)
Q Consensus 252 ~v~iwd~~~~~~ 263 (915)
.+.+||...+..
T Consensus 257 s~~fWd~s~g~~ 268 (993)
T KOG1983|consen 257 SYAFWDVSSGKL 268 (993)
T ss_pred CEEeeecCCCce
Confidence 999999988765
No 458
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.14 E-value=0.59 Score=59.37 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=72.1
Q ss_pred ecccCCHHHHHHHHHHc-CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHH
Q 002493 649 AIQLGRLEVAQEIATEV-QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASL 719 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~ 719 (915)
....|++++|.++++.. .++..+..||..++..|+++.|+++|.++-.. ..+..+|...|+.+......+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678888898888743 34567888999999999999999999977532 2456677778887766655554
Q ss_pred HHHcCCc-----hHHHHHHHHcCCHHHHHHHHHHCC
Q 002493 720 AKEQGKN-----NVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 720 ~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
+...... ...+.++...|++++|+++|.+.-
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4433211 123456667888888888888753
No 459
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.91 E-value=0.73 Score=54.33 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=47.8
Q ss_pred cccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh----HHHHHHHcCCc--------chhHHHHHhcCCHHH
Q 002493 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM----AEGCMKQAMDL--------SGLLLLYSSLGDAEG 712 (915)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~----A~~~y~~~~d~--------~~l~~l~~~~~~~~~ 712 (915)
+.+|++++|.+..+.. +++..+..||..+...|+++. |+.+|.++-.. ..+..++...|+.+.
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4556666666655432 234556666666666666664 56666655322 123334444555444
Q ss_pred HHHHHHHHHHcCCchH-----HHHHHHHcCCHHHHHHHHHH
Q 002493 713 ISKLASLAKEQGKNNV-----AFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 713 ~~~l~~~~~~~~~~~~-----a~~~~~~~g~~~~a~~l~~~ 748 (915)
.....+.+....-.+. -+.++...|++++|++.|.+
T Consensus 303 A~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 303 AIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4333333322221111 12344455666666655543
No 460
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.81 E-value=0.41 Score=49.98 Aligned_cols=164 Identities=24% Similarity=0.300 Sum_probs=102.6
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchH-------H--HHHHHHHhCCChhhh-------hhcccCccce----eeeecccCC
Q 002493 595 YKTLVMRGDLERANEILPSIPKEHH-------N--SVARFLESRGMIEEA-------IEVATDPDYR----FELAIQLGR 654 (915)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~i~~~~~-------~--~~~~~~~~~~~~~~a-------l~~~~~~~~~----f~~~l~l~~ 654 (915)
-...+.+||++.|.++|+....... + .+.+|++.-..+-.| +...+-..++ =..+...|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 3455568899998887754432211 1 123555443333333 3322221111 156678899
Q ss_pred HHHHHHHHHHcC-Ch----hHHHHHHHHHHHcCChhhHHHHHHHcC---------------------CcchhHHHHHh--
Q 002493 655 LEVAQEIATEVQ-SE----SKWKQLGELAMSTGKLEMAEGCMKQAM---------------------DLSGLLLLYSS-- 706 (915)
Q Consensus 655 ~~~A~~~a~~~~-~~----~~w~~la~~al~~~~~~~A~~~y~~~~---------------------d~~~l~~l~~~-- 706 (915)
++.|.+..++.- +. +..-.+|-.|...|+++.|..||.+.. |...++.+|..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999988532 21 233367888999999999999998764 22233333332
Q ss_pred ---cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCC--------HHHHHHHHHHCCCchHHHHH
Q 002493 707 ---LGDAEGISKLASLAKEQGKNNVAFLCLFMLGK--------LEDCLQLLVESNRIPEAALM 758 (915)
Q Consensus 707 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~--------~~~a~~l~~~~~~~~~A~~l 758 (915)
-.|+..+.+|+++-.++|+-..||.|+.-.=+ ++=-..+|+.+.-|++|+.+
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677788899999999999999999643222 23445677888888888743
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.77 E-value=11 Score=40.15 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---eEEEe----cCCCCEEEEEEcCC---CCEEEEEEcC--------
Q 002493 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKVFE----AHTDYIRCVAVHPT---LPYVLSSSDD-------- 120 (915)
Q Consensus 59 ~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~l~~~~~d-------- 120 (915)
..+.|+|.|+|+.+++ ...|.|++++ ..+.. +..+. ........++++|+ ..+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 44443 22221 23456899999994 3455444331
Q ss_pred -CeEEEEECCCC-------eeEEEEeec---CCccEEEEEEccCCCCEEEEEECC-------------CcEEEEECCCCC
Q 002493 121 -MLIKLWDWEKG-------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLD-------------RTIKIWNLGSPD 176 (915)
Q Consensus 121 -g~i~iwd~~~~-------~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~~d-------------g~i~i~d~~~~~ 176 (915)
..|.-|....+ ..+...... ..+.-..+.|.| ++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24555544433 111112222 345567799999 77666655442 234334432210
Q ss_pred ------------CceEEecCCCCeeEEEEEeC-CCcCEEEEE--eCCCeEEEEECCCC----------------------
Q 002493 177 ------------PNFTLDAHQKGVNCVDYFTG-GDKPYLITG--SDDHTAKVWDYQTK---------------------- 219 (915)
Q Consensus 177 ------------~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~--~~dg~i~iwd~~~~---------------------- 219 (915)
....+...-.....++|.|. +. |.++ +.++.=.|--+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~---l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR---LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE---EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCc---EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 01111111223357888887 43 3333 22222222111111
Q ss_pred -------cEEEEecCCccCeEEEEEeCC-------CCEEEEEEcCCcEEEEeCCCccee---ee-eecCCccEEEEEEec
Q 002493 220 -------SCVQTLEGHTHNVSAVCFHPE-------LPIIITGSEDGTVRIWHATTYRLE---NT-LNYGLERVWAIGYMK 281 (915)
Q Consensus 220 -------~~~~~~~~~~~~i~~i~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~~---~~-~~~~~~~v~~i~~~~ 281 (915)
.++..+..| ..++.+.|.+. |.++++.-..+.|....+.....+ .. +.....++..+++.|
T Consensus 237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 122233323 45666776643 345555544567777776544322 12 222334899999999
Q ss_pred CCCEEEEEecCCeEE
Q 002493 282 SSRRIVIGYDEGTIM 296 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~ 296 (915)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 998888877777764
No 462
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.50 E-value=0.44 Score=54.60 Aligned_cols=107 Identities=29% Similarity=0.418 Sum_probs=66.0
Q ss_pred HHHccCHHHHhhhcCCCCc-c-----hHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHH-----HcC
Q 002493 598 LVMRGDLERANEILPSIPK-E-----HHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIAT-----EVQ 666 (915)
Q Consensus 598 ~~~~~~~~~a~~~~~~i~~-~-----~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~-----~~~ 666 (915)
...+|++++|..++..|-. . .+..++..++.+|..++++ .... .-.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l-----------------------~~~llAAHL~p~ 205 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKAL-----------------------NFWLLAAHLNPK 205 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHH-----------------------HHHHHHHhcCCC
Confidence 3347899888766533211 1 1233445555565555554 3332 223
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 002493 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM 735 (915)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 735 (915)
+...|..+|++..+.|+++.|.-||.++=.+ .-.+.+.+.+-+.+..+.|+...|..++.+
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 4689999999999999999999999986322 222344455556666666666666666544
No 463
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.44 E-value=4.1 Score=44.19 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=76.4
Q ss_pred CCEEEEEEcCCCCeEEEEE-----------cCC-cEEEEECCC--Cce--eEEEEecCCCEEEEEEeCCCCEEEEEeCCC
Q 002493 16 ERVKSVDLHPSEPWILASL-----------YSG-TVCIWNYQS--QTM--AKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~g~~dg 79 (915)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-...+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4578899999999665532 223 787886443 332 23343333456889999988 44444444
Q ss_pred eEEEEECCCC-----ceeEE---Eec----CCCCEEEEEEcCCCCEEEEEEcC-------------------CeEEEEEC
Q 002493 80 FIRVYNYNTM-----DKVKV---FEA----HTDYIRCVAVHPTLPYVLSSSDD-------------------MLIKLWDW 128 (915)
Q Consensus 80 ~i~vwd~~~~-----~~~~~---~~~----~~~~i~~l~~s~~~~~l~~~~~d-------------------g~i~iwd~ 128 (915)
..++.+.+.. +.... +.. +......++|.|+|.+.++-+.. |.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344321 22112 222 12347789999999765544321 44555555
Q ss_pred CCCeeEEEEeecCCccEEEEEEccCCCCEEEE
Q 002493 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
+++ .....-.++ .....++|+| +++++++
T Consensus 172 dg~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~t 200 (367)
T TIGR02604 172 DGG-KLRVVAHGF-QNPYGHSVDS-WGDVFFC 200 (367)
T ss_pred CCC-eEEEEecCc-CCCccceECC-CCCEEEE
Confidence 554 222222222 3346778887 6666654
No 464
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.41 E-value=21 Score=42.36 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCC------CeEEEEEcCCcEEEEECCCCceeEEEEe--cCCCEEEEEEeC---CC------CEEEEEeC
Q 002493 15 SERVKSVDLHPSE------PWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVA---RK------QWVVAGAD 77 (915)
Q Consensus 15 ~~~v~~~~~sp~~------~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~---~~------~~l~~g~~ 77 (915)
+..|.|+++.++. ++++.++.|+.++++.+.....+..+.. -..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568899998875 4799999999999999887666665543 344555555433 23 24567777
Q ss_pred CCeEEEE
Q 002493 78 DMFIRVY 84 (915)
Q Consensus 78 dg~i~vw 84 (915)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
No 465
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.36 E-value=0.88 Score=45.39 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=32.9
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002493 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
+...|++++|.+..++. .+...|..+|..+...|+++.|++.|.++-
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44566677666665432 335677788888888888888888888764
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=1.5 Score=46.18 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=90.1
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCC--ceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee----
Q 002493 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV---- 92 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~---- 92 (915)
.+-|....+.|. +..+|.+.=|-+... ....++. ...++|.++.||+|++.||+--.+..|.+++....+..
T Consensus 27 gvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344444444333 334555666654432 2223333 35679999999999999999999999999998443322
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEccCCCCEEEEEE
Q 002493 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
...+..+..|....|+.+ .-++..+..| +-+|.........+..+.|+..|.-..|.+ +.+.+..++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeec
Confidence 122334456999999976 4566666555 677766655455566677888888888988 555544443
No 467
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.24 E-value=0.89 Score=56.47 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=67.6
Q ss_pred HHHHHHhCCChhhhhhcccC-----ccce-----eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh
Q 002493 622 VARFLESRGMIEEAIEVATD-----PDYR-----FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM 686 (915)
Q Consensus 622 ~~~~~~~~~~~~~al~~~~~-----~~~~-----f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~ 686 (915)
+...+...|.+++|+..... |... .......|++++|.+..... ++...+..+|..+...|+++.
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 34445556666666554321 1111 13445677777777766542 345577778888888888888
Q ss_pred HHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCchH----HHHHHHHcCCHHHHHHHHHH
Q 002493 687 AEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGKNNV----AFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 687 A~~~y~~~~d~--------~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~g~~~~a~~l~~~ 748 (915)
|.++|.++-.. ..+..+|...|+.+-+..+.+.......... -+.++...|++++|+++|.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888776422 2445556666663322222222222222211 12334445666666665543
No 468
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.24 E-value=0.66 Score=45.10 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=52.5
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHH-HHHhcCC--HHHHHHHHHHHHHcCCch-----H
Q 002493 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLL-LYSSLGD--AEGISKLASLAKEQGKNN-----V 728 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~-l~~~~~~--~~~~~~l~~~~~~~~~~~-----~ 728 (915)
-++...|..||..++..|+++.|..+|.++-.+. .+.. +|...|+ .+....+-+.+...+-.+ .
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 3568899999999999999999999999886433 2222 2344454 233444444443333322 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHC
Q 002493 729 AFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 729 a~~~~~~~g~~~~a~~l~~~~ 749 (915)
-+.+++..|++++|+..|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 233445567777777766643
No 469
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.06 E-value=3 Score=47.48 Aligned_cols=111 Identities=9% Similarity=0.165 Sum_probs=72.1
Q ss_pred EEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-----C
Q 002493 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-----T 218 (915)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~ 218 (915)
..-+.-+. -+...++.+...++.|||.+.+.....-. .....|..+.|...+++..+++.+..+.|.++.-. +
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344443 23344444445579999998876433222 35788999999988777788888889999998531 1
Q ss_pred ----CcEEEEe--cCCc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002493 219 ----KSCVQTL--EGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 219 ----~~~~~~~--~~~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
..++..+ ..+. ++|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1233333 2233 679999999999655443 447888873
No 470
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.06 E-value=0.76 Score=57.06 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCChhhhhhcccC-----ccc---e---eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCC
Q 002493 620 NSVARFLESRGMIEEAIEVATD-----PDY---R---FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~~-----~~~---~---f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (915)
..++..+...|..++|+..... |.. . -..+...|++++|.++++.. .++..|..+|..+...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3445555566666666554321 111 1 13455677888888777653 345678888888888888
Q ss_pred hhhHHHHHHHc
Q 002493 684 LEMAEGCMKQA 694 (915)
Q Consensus 684 ~~~A~~~y~~~ 694 (915)
++.|..+|.++
T Consensus 617 ~~~A~~~~~~~ 627 (899)
T TIGR02917 617 LNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.99 E-value=0.073 Score=60.18 Aligned_cols=117 Identities=14% Similarity=0.162 Sum_probs=71.4
Q ss_pred hhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECC--CCceeEEEEe-----cCCCEEEEEEeC---CCCEEEEEeC
Q 002493 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQ--SQTMAKSFEV-----TELPVRSAKFVA---RKQWVVAGAD 77 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~---~~~~l~~g~~ 77 (915)
..+++.++.|-.+.|-. +.+.++ -.-|...||++. .|++...+.. -...+.-+.|.| +.-++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34567777787777743 333333 234678899875 3544433332 234455666655 6777888888
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEE-----------cCCCCEEEEEEcCCeEEEEEC
Q 002493 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-----------HPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-----------s~~~~~l~~~~~dg~i~iwd~ 128 (915)
++.|++.++++... ..+.+|...+..++| ||||..++.++.||.++.|.+
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 99999988775433 445567776666554 556666666666665555543
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=3.2 Score=43.92 Aligned_cols=126 Identities=9% Similarity=0.004 Sum_probs=78.4
Q ss_pred EEEEEeCCCeEEEEECCCC--ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE---EEEeecCCcc
Q 002493 71 WVVAGADDMFIRVYNYNTM--DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC---TQIFEGHSHY 144 (915)
Q Consensus 71 ~l~~g~~dg~i~vwd~~~~--~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~ 144 (915)
..+.+...|.+.=|-.+.. .....+ ....++|.++.||+|.+.|++--.+.+|.+++....... .......+..
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 3333334444555544321 222222 234679999999999999999999999999987443111 1222233455
Q ss_pred EEEEEEccCCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCc
Q 002493 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 145 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
|....|+. ..-++..+..| +-+|.....+ ..+..+.+...|+-..|+++..-
T Consensus 115 IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 115 ILGFCWTS--STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred eEEEEEec--CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 88899985 45566655444 5666554332 33444667888888889888763
No 473
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.73 E-value=0.49 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCC---CeEEEEEcCCcEEEEECCCC
Q 002493 16 ERVKSVDLHPSE---PWILASLYSGTVCIWNYQSQ 47 (915)
Q Consensus 16 ~~v~~~~~sp~~---~~la~~~~dg~v~iwd~~~~ 47 (915)
+.|++|.|||.. .+|+.+-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888999999999853
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.56 E-value=10 Score=36.49 Aligned_cols=102 Identities=15% Similarity=0.283 Sum_probs=65.3
Q ss_pred CeEEEEEcCCcEEEEECCC--CceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CC---eEEEE-ECCC----CceeE-
Q 002493 28 PWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DM---FIRVY-NYNT----MDKVK- 93 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~---dg---~i~vw-d~~~----~~~~~- 93 (915)
..|.++...+.|.+|++.. .+....|..- +.|..+.++..|++|++--. .. .+|+| |+.. .+.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4555556678899999883 3455566644 78999999999999999633 22 66776 3221 11111
Q ss_pred --------------------EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002493 94 --------------------VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 94 --------------------~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.++ .-+.++.+++..|-...|++|+.+ .+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEE
Confidence 111 123457788888865567777654 7899987644
No 475
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=92.48 E-value=16 Score=40.28 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=82.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002493 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
..+|..+.+...| .+.+|+.|| +..||..+++.+..-.... .+|..+.-+-.| .+.+|+.+| |++.+.++. ...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~-~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGW-RAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhc-ccc
Confidence 3467777777776 477788888 6678888877665544333 556666666555 478888877 677776652 222
Q ss_pred EEeec-CCccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEec---CCCCeeEEEEEeCCCcCEEEEEeCCCeE
Q 002493 136 QIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---HQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 136 ~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
..... ....|..+.-. ....+..|+..|..+.- +........... ....|+++-...+|. +-+++.+|.+
T Consensus 239 n~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~-l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs---LWv~t~~giv 312 (671)
T COG3292 239 NWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTR-LPRQGLQIPLSKMHLGVSTVNSLWLDTDGS---LWVGTYGGIV 312 (671)
T ss_pred ccCCCCcchheeeeecc--cCCCEEEeecccceeEe-cCCCCccccccccCCccccccceeeccCCC---EeeeccCceE
Confidence 22111 22334433332 34567778877754332 222222222111 123344444444454 7778877766
Q ss_pred EEEE
Q 002493 212 KVWD 215 (915)
Q Consensus 212 ~iwd 215 (915)
++-+
T Consensus 313 ~~~~ 316 (671)
T COG3292 313 RYLT 316 (671)
T ss_pred EEec
Confidence 6544
No 476
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.41 E-value=2 Score=52.61 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHcC----ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----hhHHHHHhc---CCHHHHHHHHH
Q 002493 651 QLGRLEVAQEIATEVQ----SESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----GLLLLYSSL---GDAEGISKLAS 718 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~----~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----~l~~l~~~~---~~~~~~~~l~~ 718 (915)
..|++++|....+++. ....|..+|..++..|+++.|+.+|.++-... -...++... |+.+......+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6777777777766432 23456777777888888888888877654321 111122222 66555444433
Q ss_pred HHHHcCC----chHHHHHHHHcCCHHHHHH
Q 002493 719 LAKEQGK----NNVAFLCLFMLGKLEDCLQ 744 (915)
Q Consensus 719 ~~~~~~~----~~~a~~~~~~~g~~~~a~~ 744 (915)
.+....- ....+.++..+|++++|+.
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3332221 1122344555667666665
No 477
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.40 E-value=1.4 Score=34.99 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002493 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
..+..+|..+...|+++.|+.+|.++ +.+....|+ .-..++.. ....+.++...|++++|+++|.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~~~~~~-----~~~~~a~~---~~~lg~~~~~~g~~~~A~~~~~- 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA------LDIEEQLGD-----DHPDTANT---LNNLGECYYRLGDYEEALEYYQ- 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHHHTTT-----HHHHHHHH---HHHHHHHHHHTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHHCC-----CCHHHHHH---HHHHHHHHHHcCCHHHHHHHHH-
Q ss_pred CCCchHHHHHHHh
Q 002493 749 SNRIPEAALMARS 761 (915)
Q Consensus 749 ~~~~~~A~~lar~ 761 (915)
+|+.+++.
T Consensus 71 -----~al~i~~k 78 (78)
T PF13424_consen 71 -----KALDIFEK 78 (78)
T ss_dssp -----HHHHHHHH
T ss_pred -----HHHhhhcC
No 478
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.33 E-value=16 Score=38.22 Aligned_cols=230 Identities=12% Similarity=0.083 Sum_probs=114.4
Q ss_pred CCeEEEEEcCCcEEEEECCC--CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCce------------
Q 002493 27 EPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK------------ 91 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~------------ 91 (915)
+++|+.|+.+| +.+.+... ++..+.+ +..+|+++...+..+.|++-+. ...++++++.....
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999998 55555554 2333333 4568999999998887766543 44699999843221
Q ss_pred ---eEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEee-------cCCccEEEEEEccC-CCCEEE
Q 002493 92 ---VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK-DTNTFA 159 (915)
Q Consensus 92 ---~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~p~-~~~~l~ 159 (915)
....-.|........+... ...++++....+|.++.+.........+. ....++..+..++. ....++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0111123332333333321 12334445556777775543211110111 11123333333331 245777
Q ss_pred EEECCCcEEEEECCC--CCCce-----EEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEE--EEecCC
Q 002493 160 SASLDRTIKIWNLGS--PDPNF-----TLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCV--QTLEGH 228 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~ 228 (915)
.|+..+...++++.. ..+.. ...... .++..... +++ -++.+.++. ..+.|.. | +.. ..+. -
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~---e~Llc~~~~-~v~Vn~~-G~~~~r~~~l~-w 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD---EFLLCYDEF-GVFVNLY-GKRRSRNPILH-W 242 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC---eEEEEECcE-EEEEeCC-CCccccceEEE-c
Confidence 777653344444432 11100 011111 33333333 232 244444443 4444544 3 221 1222 2
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec
Q 002493 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
.....++++.. ++|++-+. ..|.++++.+++.++++..
T Consensus 243 ~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 34456677764 56776664 4699999999998887764
No 479
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.21 E-value=1.6 Score=42.11 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc----hhHH----HHHhcCCHHHHHHHHHHHHH---
Q 002493 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS----GLLL----LYSSLGDAEGISKLASLAKE--- 722 (915)
Q Consensus 654 ~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~----~l~~----l~~~~~~~~~~~~l~~~~~~--- 722 (915)
++++|++... +....|-.+|.++...|+.+.|.+.|.++-... .++. ..+..|.++.-+..-+.|..
T Consensus 57 nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~ 134 (250)
T COG3063 57 NLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPA 134 (250)
T ss_pred HHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC
Confidence 3444444432 346689999999999999999999999874211 1111 22345566655554444433
Q ss_pred ----cCCchHHHHHHHHcCCHHHHHHHHHHC-----CCchHHHHHHHhcCC
Q 002493 723 ----QGKNNVAFLCLFMLGKLEDCLQLLVES-----NRIPEAALMARSYLP 764 (915)
Q Consensus 723 ----~~~~~~a~~~~~~~g~~~~a~~l~~~~-----~~~~~A~~lar~~~~ 764 (915)
.+-+.=++.|+++.|+++.|.++|.++ +.+.-.++|++.+..
T Consensus 135 Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 135 YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 233456788999999999999988765 445555678777644
No 480
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.14 E-value=1.3 Score=56.26 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=55.3
Q ss_pred HHHHHhCCChhhhhhcccC-ccce---e---eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHH
Q 002493 623 ARFLESRGMIEEAIEVATD-PDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 623 ~~~~~~~~~~~~al~~~~~-~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
+..+...|..++|+.+... |... + .++.+.|++++|.+..+.. ++...|..+|..+...|+++.|+++
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445667888888766532 2221 1 5567889999999998753 3577999999999999999999999
Q ss_pred HHHcCC
Q 002493 691 MKQAMD 696 (915)
Q Consensus 691 y~~~~d 696 (915)
|.++-.
T Consensus 660 l~~ll~ 665 (1157)
T PRK11447 660 LAKLPA 665 (1157)
T ss_pred HHHHhc
Confidence 997653
No 481
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=8.8 Score=36.41 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=90.1
Q ss_pred CCeEEEEEc--CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002493 27 EPWILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 27 ~~~la~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
|.++.+.+. ...|++||+.+|+.+.+-+.....+..=-...-|+.+. -...+|.-..+|.++.+.+..+.- .+.=+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcce
Confidence 444444433 45699999999988766553322222111112233333 334688889999998888777653 22234
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCee---EEEEeecC-CccEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCce
Q 002493 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179 (915)
Q Consensus 104 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 179 (915)
.++ .|+..|+.++...++..-|.++... +.....+. -..+.-+.|- ++...+-.=.+..|...+..+|+...
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 444 3555677776666777777654321 11121111 1122333443 34444433333444444444444332
Q ss_pred EE------------ecCCCCeeEEEEEeCCCcCEEEEE
Q 002493 180 TL------------DAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 180 ~~------------~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+ ..+..-.+.+++.|.++. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence 22 123445678888887764 56665
No 482
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.99 E-value=0.45 Score=38.68 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHc----C---ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002493 652 LGRLEVAQEIATEV----Q---SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (915)
Q Consensus 652 l~~~~~A~~~a~~~----~---~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 724 (915)
.|+++.|..++.++ + +...|-.+|..+...|+++.|...+.+ ..... . -....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~-------~~~~~---- 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------S-------NPDIH---- 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------C-------HHHHH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------C-------CHHHH----
Confidence 35677777766532 2 345788899999999999999777766 11100 0 00111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002493 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+ +.+.|++.+|++++|++.|.+
T Consensus 62 -~-l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 -Y-LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -H-HHHHHHHHTT-HHHHHHHHHH
T ss_pred -H-HHHHHHHHhCCHHHHHHHHhc
Confidence 2 336788899999999998875
No 483
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.72 E-value=0.56 Score=51.35 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHc---CC--hhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002493 651 QLGRLEVAQEIATEV---QS--ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~---~~--~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
..|++.+|.....+. +. .-.|..||-....+|++-.|.+.|.++-
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 456666666655432 11 2256666666666666666666666554
No 484
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.70 E-value=29 Score=39.68 Aligned_cols=283 Identities=14% Similarity=0.186 Sum_probs=133.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC----C-ceeEEEE---ecCCCEEEEEEeC-----CCCEEEEE--eCCC
Q 002493 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS----Q-TMAKSFE---VTELPVRSAKFVA-----RKQWVVAG--ADDM 79 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~----~-~~~~~~~---~~~~~v~~~~~~~-----~~~~l~~g--~~dg 79 (915)
...-..++.+|.|+.++++...|.+.||-++. + .....+. .....|..++|-. +...|++- ...+
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 34456799999999999999999999999877 1 1111111 1256788899985 23344432 2222
Q ss_pred --eEEEEECCCCceeEE----------E-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--C-eeEEEEee---c
Q 002493 80 --FIRVYNYNTMDKVKV----------F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--G-WMCTQIFE---G 140 (915)
Q Consensus 80 --~i~vwd~~~~~~~~~----------~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~---~ 140 (915)
.+..|.+.....+.. + ..+..+..-+........+++++.+ .+.+-+... + ......-. .
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~-~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGEN-IIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESS-EEEEEE------TTEEEEE--H-HH
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCE-EEEEecccccccccccccccCCccC
Confidence 344444222211111 1 1112222222222223335555443 333322211 1 11111111 1
Q ss_pred CCccEEEEEE------ccCCCCEEEEEECCCcEEEEECCCCCC--ceEEecC-CCCeeEEEEEeCCCcCEEEEEeCCC--
Q 002493 141 HSHYVMQVTF------NPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDH-- 209 (915)
Q Consensus 141 ~~~~v~~~~~------~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg-- 209 (915)
...-+.+..+ ...++..++.+..+|.+....+..... ....-+. .....++.+..++ ..++++|+.-|
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs~~gds 280 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-GDYLFVGSEFGDS 280 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT---EEEEEESSS-E
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEEecCCc
Confidence 1233344333 234678899999999998887754331 1111122 4455778877776 33788887654
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCC----CC------EEEEEE---cCCcEEEEeCCCcce--e-eeeecC-Cc
Q 002493 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE----LP------IIITGS---EDGTVRIWHATTYRL--E-NTLNYG-LE 272 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~----~~------~l~~~~---~dg~v~iwd~~~~~~--~-~~~~~~-~~ 272 (915)
.+..|....-+.+..+. .-++|..+++.+. .. .|++++ .+|.+++..-.-+-. . ...... ..
T Consensus 281 ~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~ 359 (504)
T PF10433_consen 281 QLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVT 359 (504)
T ss_dssp EEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEE
T ss_pred EEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCce
Confidence 45555544344555555 4578888888632 11 455543 567888885321111 1 111111 24
Q ss_pred cEEEEEEec-CCCEEEEEecCCeEEEecC
Q 002493 273 RVWAIGYMK-SSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 273 ~v~~i~~~~-~~~~l~~g~~dg~v~i~~~ 300 (915)
.+|.+.... +..+|+++..+.+..+...
T Consensus 360 ~iW~l~~~~~~~~~lv~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 360 GIWTLKLSSSDHSYLVLSFPNETRVLQIS 388 (504)
T ss_dssp EEEEE-SSSSSBSEEEEEESSEEEEEEES
T ss_pred EEEEeeecCCCceEEEEEcCCceEEEEEe
Confidence 455555432 2568888888888887764
No 485
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.69 E-value=2.1 Score=44.53 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCchHHHHHHH
Q 002493 740 EDCLQLLVESNRIPEAALMAR 760 (915)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~lar 760 (915)
.++..++.+.+++++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 345555556666666654443
No 486
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.54 E-value=3.3 Score=47.14 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=71.0
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECC------
Q 002493 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFV--ARKQWVVAGADDMFIRVYNYN------ 87 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~g~~dg~i~vwd~~------ 87 (915)
.++-+.-|.-++.-++-+....+.|||...+.....-. ...++|.++.|. |+|+.+++.+-...|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555544444445679999998876443332 247789999995 588888888888999998531
Q ss_pred ---CCceeEEE--ecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002493 88 ---TMDKVKVF--EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 88 ---~~~~~~~~--~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+...++.+ ..|+ .+|.+..|.++|. +++|+. ..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSG-NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeC-CEEEEECC
Confidence 11223332 2333 6799999999995 444443 46788763
No 487
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.48 E-value=1.6 Score=53.53 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHc----CChhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002493 653 GRLEVAQEIATEV----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 653 ~~~~~A~~~a~~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
|++++|....++. ++...|..+|..+...|+++.|+.+|.++-
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL 636 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAAL 636 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666665555422 234556666666666666666666665543
No 488
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.35 E-value=0.27 Score=37.54 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=37.4
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002493 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+++.|++++|.++.+.+ .+...|..+|..+...|+++.|...|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778888888888754 34679999999999999999999888875
No 489
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=91.31 E-value=0.35 Score=53.62 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=11.8
Q ss_pred HHHHHHHhCCChhhhhhcc
Q 002493 621 SVARFLESRGMIEEAIEVA 639 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~ 639 (915)
.++..+..+|.++.|...+
T Consensus 204 ~La~~y~~~g~~e~A~~l~ 222 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLC 222 (508)
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 3566666677777766543
No 490
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.29 E-value=2.1 Score=39.13 Aligned_cols=80 Identities=18% Similarity=0.041 Sum_probs=49.4
Q ss_pred eecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002493 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (915)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~~~ 722 (915)
...+.|++++|...++.. .+...|..+|..+...|+++.|..+|.++-..+ .++++..
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--------p~~~~a~--------- 95 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--------ASHPEPV--------- 95 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHH---------
Confidence 345777788877776542 346677778888888888888877777653221 2222212
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHH
Q 002493 723 QGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 723 ~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
...+.++..+|++++|+..|.+
T Consensus 96 ----~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 96 ----YQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHH
Confidence 1223455667888888777754
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.18 E-value=0.76 Score=51.63 Aligned_cols=97 Identities=15% Similarity=0.017 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHH-----HHcC-CchHHHHHHHHcCCHH
Q 002493 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLA-----KEQG-KNNVAFLCLFMLGKLE 740 (915)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~l~~~~-----~~~~-~~~~a~~~~~~~g~~~ 740 (915)
+..+....|.++...|.+..|..+|..++.+....-+..+....+ +...|+.. .... ..+.+.....++.+..
T Consensus 934 ~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~ 1012 (1243)
T COG5290 934 DNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENLY 1012 (1243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHH
Confidence 344566778888889999999999999998888776666544433 44444332 1122 2333444466789999
Q ss_pred HHHHHHHHCCCchHHHHHHHhcCC
Q 002493 741 DCLQLLVESNRIPEAALMARSYLP 764 (915)
Q Consensus 741 ~a~~l~~~~~~~~~A~~lar~~~~ 764 (915)
+|+.++++..++.+|+..|+.-+.
T Consensus 1013 eava~~ckgs~y~ea~~~a~~s~~ 1036 (1243)
T COG5290 1013 EAVAMDCKGSEYREAFCEAMVSRL 1036 (1243)
T ss_pred HHHHHHcccccchHHHHHHHHhhh
Confidence 999999999999999988876543
No 492
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.12 E-value=15 Score=35.41 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=38.4
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCC--CcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002493 234 AVCFHPELPIIITGSEDGTVRIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~ 290 (915)
.++..+. ..|+.+...+.|.+|++. ..+...++..- +.|..+.++..|++|++--
T Consensus 22 ~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 22 AVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred eeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 3444442 344444566789999988 33455666655 8899999999999999843
No 493
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.09 E-value=1.1 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCC
Q 002493 100 DYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 100 ~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~ 131 (915)
+.|+++.|||.. .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888888899999999964
No 494
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=90.97 E-value=1 Score=46.78 Aligned_cols=12 Identities=58% Similarity=0.872 Sum_probs=0.0
Q ss_pred HccCHHHHhhhc
Q 002493 600 MRGDLERANEIL 611 (915)
Q Consensus 600 ~~~~~~~a~~~~ 611 (915)
.+++++.|..++
T Consensus 20 ~~~~~~~Al~~L 31 (280)
T PF13429_consen 20 QRGDYEKALEVL 31 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 356666666665
No 495
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.95 E-value=34 Score=39.10 Aligned_cols=250 Identities=11% Similarity=0.093 Sum_probs=110.0
Q ss_pred eEEEEEcCCcEEEEECC--CCceeEEE----Ee-------cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----Cc
Q 002493 29 WILASLYSGTVCIWNYQ--SQTMAKSF----EV-------TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-----MD 90 (915)
Q Consensus 29 ~la~~~~dg~v~iwd~~--~~~~~~~~----~~-------~~~~v~~~~~~~~~~~l~~g~~dg~i~vwd~~~-----~~ 90 (915)
+|+.++.+|.+.+-.+. +....+.+ .. ...+-..++..|.|+.++++..+|.+.||-++. ..
T Consensus 2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~ 81 (504)
T PF10433_consen 2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIA 81 (504)
T ss_dssp EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-T
T ss_pred EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEeccccccccc
Confidence 46777777776554333 33322211 11 123456789999999999999999999998876 01
Q ss_pred eeEEEe---cCCCCEEEEEEcC-----CCCEEEEE--EcC--CeEEEEECCCCeeEEEEee----------cCCccEEEE
Q 002493 91 KVKVFE---AHTDYIRCVAVHP-----TLPYVLSS--SDD--MLIKLWDWEKGWMCTQIFE----------GHSHYVMQV 148 (915)
Q Consensus 91 ~~~~~~---~~~~~i~~l~~s~-----~~~~l~~~--~~d--g~i~iwd~~~~~~~~~~~~----------~~~~~v~~~ 148 (915)
....+. .....|..++|-. +.+.+++- ... ..+..+.+........... .+..+..-+
T Consensus 82 ~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LI 161 (504)
T PF10433_consen 82 FSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLI 161 (504)
T ss_dssp T---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEE
T ss_pred ccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEE
Confidence 111111 1256688888875 33444432 222 2244444332211111111 111121222
Q ss_pred EEccCCCCEEEEEECCCcEEEEECCC--CCC-ceEEecC----CCCeeEEEE-----EeCCCcCEEEEEeCCCeEEEEEC
Q 002493 149 TFNPKDTNTFASASLDRTIKIWNLGS--PDP-NFTLDAH----QKGVNCVDY-----FTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~----~~~v~~~~~-----~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.. |.....+++++ ++.+.+-+... +.. ...+... ..-+.+..+ ....+...++.+..+|.+....+
T Consensus 162 Pl-p~~~ggllV~~-~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l 239 (504)
T PF10433_consen 162 PL-PNPPGGLLVGG-ENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTL 239 (504)
T ss_dssp EE--TTT-SEEEEE-SSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEE
T ss_pred Ec-CCCCcEEEEEC-CEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEE
Confidence 22 21233344443 23333332211 111 1122111 122222222 02233347888999999998877
Q ss_pred CCCc---EEEEecCCccCeEEEEEeCCC-CEEEEEEcCC--cEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002493 217 QTKS---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDG--TVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 217 ~~~~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
.... .+..+.......+++++..+| .+++.||.-| .+..|.....+.+..+.. -++|..++..+
T Consensus 240 ~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N-~~Pi~D~~v~~ 309 (504)
T PF10433_consen 240 DNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN-WGPIVDFCVVD 309 (504)
T ss_dssp EEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-
T ss_pred EECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC-cCCccceEEec
Confidence 6433 222222113445677777665 3777777654 455555444445555543 37888888864
No 496
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.92 E-value=8.6 Score=44.41 Aligned_cols=144 Identities=13% Similarity=0.168 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeE------EEEe----------------cCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002493 27 EPWILASLYSGTVCIWNYQSQTMAK------SFEV----------------TELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~------~~~~----------------~~~~v~~~~~~~--~~~~l~~g~~dg~i~ 82 (915)
+++|.++. .+.|.||+...-.... .+.. ....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 7899999976432211 1100 111244443322 456788999999999
Q ss_pred EEECCC-------C----c---------eeEEEecCCCCEEEEEEc--CCCCEEEEEEcCCeEEEEECCCC--eeEEEEe
Q 002493 83 VYNYNT-------M----D---------KVKVFEAHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWEKG--WMCTQIF 138 (915)
Q Consensus 83 vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 138 (915)
+|.+++ . + +-..+ .-....++++++ ...++||+++....|.||-.... +.....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997521 0 0 01111 123468999998 78888999998888888865432 1111111
Q ss_pred ecCCccEEEEEEccCC--CC---EEEEEECCCcEEEEEC
Q 002493 139 EGHSHYVMQVTFNPKD--TN---TFASASLDRTIKIWNL 172 (915)
Q Consensus 139 ~~~~~~v~~~~~~p~~--~~---~l~~~~~dg~i~i~d~ 172 (915)
..|.+.|-+++|.+.+ +. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356678899998733 22 7888899999999887
No 497
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.83 E-value=1.7 Score=43.26 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHHHH-----cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHH
Q 002493 651 QLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLA 717 (915)
Q Consensus 651 ~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~~~~~~~~~l~ 717 (915)
..|++++|.+.+.+ -.+...|..+|..+...|+++.|.++|.++-... .+..+|...|+.+......
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34445555544432 2346688899999999999999999998775332 2234455566655544444
Q ss_pred HHHHHcCC-------chHHHHHHHHcCCHHHHHHHHHH
Q 002493 718 SLAKEQGK-------NNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 718 ~~~~~~~~-------~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+.+..... ....+.++...|++++|+++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44332211 11123445556666666666654
No 498
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.73 E-value=5.2 Score=43.22 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred cEEEEEEccCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE
Q 002493 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 144 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
.|..+..++ .|..++..+.+|.+.++=.+...+...+...+..|+|-.+.-+.. +++.+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~---~ftss----------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER---FFTSS----------------- 163 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce---eeccC-----------------
Confidence 356677777 778888888888666554333223333333333344433322221 22111
Q ss_pred EecCCccCeEEEEEeCCC---CEEEEEEcCCcEEEEeCCCcceee
Q 002493 224 TLEGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 224 ~~~~~~~~i~~i~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
..-.+..++|+|+. ..+..-+.|+.||+||......+.
T Consensus 164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 11234567888875 567777789999999988766553
No 499
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.65 E-value=0.8 Score=47.68 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCc-----------chhHHHHHhcCCHHHHHHHHHHHHHcC------------
Q 002493 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDL-----------SGLLLLYSSLGDAEGISKLASLAKEQG------------ 724 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~-----------~~l~~l~~~~~~~~~~~~l~~~~~~~~------------ 724 (915)
....+.||+.++..|+++.|.+||.|++|| -.++++....|+...|..-...|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 346778999999999999999999999887 356667777888777766555554431
Q ss_pred -CchHHHHHHHHcCCHHHHHHHHHHCC
Q 002493 725 -KNNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 725 -~~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
-.-.|+.+.+.+++|+.|+..|+...
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12346667777889999999988654
No 500
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.57 E-value=0.34 Score=31.78 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 002493 671 WKQLGELAMSTGKLEMAEGCMKQ 693 (915)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~ 693 (915)
|..||..+...|+++.|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 67899999999999999999998
Done!