Query 002493
Match_columns 915
No_of_seqs 1063 out of 4673
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 21:56:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002493.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_54-57//hhsearch_pdb/002493hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 820.1 93.5 791 3-797 1-813 (814)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 432.0 56.3 549 9-588 609-1247(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 420.8 57.0 537 12-589 15-610 (611)
4 2ymu_A WD-40 repeat protein; u 1.0 1 1 417.1 71.3 534 7-587 8-577 (577)
5 3mkq_A Coatomer beta'-subunit; 1.0 1 1 413.7 56.2 691 48-817 4-804 (814)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 411.5 45.5 500 6-547 648-1245(1249)
7 1nr0_A Actin interacting prote 1.0 1 1 408.9 58.0 463 6-490 50-563 (611)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 396.6 60.8 456 6-490 48-535 (577)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 369.8 61.3 467 11-490 13-657 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 367.2 55.8 539 11-590 14-614 (615)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=820.08 Aligned_cols=791 Identities=47% Similarity=0.878 Sum_probs=719.3
Q ss_pred CCHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 81156555145898779999848999699997699099997899924589771398879999948999999995898699
Q 002493 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~ 82 (915)
+++++.+++.+|++.|++++|||++++|++++.+|.|+|||+.++..+..+..|..+|++++|+|++++|++++.||.|+
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 99650004505898568999889999899994799899998999916778733899688999968999899992899499
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 99879992569981589977899994999999999759929999789990588985148843799999059997999997
Q 002493 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 162 (915)
+|++.+++.+..+..|.+.|++++|+|++++|++++.||.|++|++.++......+.+|...+.+++|+|.+++.+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 99899995879981689978999995899989999289989999899995487998379986889999769999999994
Q ss_pred CCCCEEEEECCCCCCCEEEECCC-CCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 89949999889999706993688-88229999767995999999689919999789995899961776585999991899
Q 002493 163 LDRTIKIWNLGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
.||.|++||+.++.....+..+. ..+.+++|+|.+++.++++++.+|.|++||+++++++..+.+|...|.+++|+|++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC
T ss_conf 88949999899996106983588897799999977999899999389979999999991889984788887899985999
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCC--EEEEEECCCEEEEECCCCCCEEEECCCCCEEEEEE
Q ss_conf 9899998699199995898612446304784489999941999--79999638908996178853168628995999960
Q 002493 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR--RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (915)
Q Consensus 242 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (915)
+++++++.||.|++||+.+++....+..+...+++++|+|++. .++++++++.+.++.....+...+.+++..++...
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCCEEEECC
T ss_conf 99999908996999989999477784068886799999249995099999079879997679974167779987899776
Q ss_pred CCE-----EEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEE
Q ss_conf 725-----999965416410105896210012214986668715897889989999929909999830333457661369
Q 002493 320 NEI-----QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALE 394 (915)
Q Consensus 320 ~~i-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~ 394 (915)
... ....+. ..+....+.........+..+...+..++|+|+|+++++++++.+.+|+...+.....+.+.+
T Consensus 321 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~ 397 (814)
T 3mkq_A 321 KNAAASDIFTAVIR---GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQD 397 (814)
T ss_dssp TTSCTTCEEEEECC---SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSE
T ss_pred CCCCCEEEEEEECC---CCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf 36641124665304---655555676201465117887657740689999998999429889999874544567995479
Q ss_pred EEEECCCCEEEEEC-CCEEEEECCCCCCEE--EEECCCCCCEEECCCEEEEEECCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 99921984899836-974998325751001--230575311353485899964891999864688088998711118999
Q 002493 395 FVWSSDGEYAVRES-SSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYW 471 (915)
Q Consensus 395 ~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~i~~i~~ 471 (915)
++|+|+++++++.+ ++.+++|+ .+.++. .....|+|++++++.++....++.|++||+.+++++..+......+.|
T Consensus 398 ~~~spdg~~la~~~~~g~v~l~~-~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~ 476 (814)
T 3mkq_A 398 FVWGPDSNSYALIDETGQIKYYK-NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIW 476 (814)
T ss_dssp EEECTTSSCEEEECTTCCEEEEE-TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEE-CCCCCCCEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 99947998599996898399997-77775243973786755236546999966998999998769599997358887999
Q ss_pred CCCCCEEEEE------ECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCEEEEECCCCEEE
Q ss_conf 0899999999------4981999991488899766279998844534423686766566785689437899973698599
Q 002493 472 ADSGDLVAIA------SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLN 545 (915)
Q Consensus 472 s~dg~~la~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~ 545 (915)
++||++++++ +++..+++|++.+.....+..+...+++|.+..|..+.++...+.+++|++++|+|.+..+++.
T Consensus 477 s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~ 556 (814)
T 3mkq_A 477 SDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLN 556 (814)
T ss_dssp CTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEE
T ss_pred CCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEE
T ss_conf 69999999998676667742899995468866666416876212502221364576427876598088899976887089
Q ss_pred EEECCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCHHHHHH-HCCCCC-CCHHHHHH
Q ss_conf 9989978699930343589999740889999916883599993502787879998059888963-569999-41178999
Q 002493 546 YCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE-ILPSIP-KEHHNSVA 623 (915)
Q Consensus 546 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~-~l~~i~-~~~~~~~~ 623 (915)
|+.+++...+.+++.+++++++.+++++++++|+++++..|.++...++|+.++.+++++.|.. +++.|+ ...+..++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~ 636 (814)
T 3mkq_A 557 YFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIA 636 (814)
T ss_dssp EEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHH
T ss_pred EEECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99698668999989667999998329999999288887999989099999699870799999988874288467899999
Q ss_pred HHHHHCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99993998366542145866302300013998899999998099568999999999749911588999881895414778
Q 002493 624 RFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLL 703 (915)
Q Consensus 624 ~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 703 (915)
+|+++.++++.|+++.+++.++|++++++|+|++|+++|+.++++.+|++||++|++++++++|++||.+++|++++.+|
T Consensus 637 ~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHCCCHHHHEECCCCCCHHEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 99986898689605278931425021450999999999986176768999999999849989999999870271355899
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHC
Q ss_conf 772299888999999999929923988999972998899999998799257899888509960--789999999854200
Q 002493 704 YSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSK--VSEIVAIWRKDLQKV 781 (915)
Q Consensus 704 ~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~--~~~~~~~~~~~L~~~ 781 (915)
|...++.+++.++++++...|+++.|+++|+++|++++|+++|++++||++|+++|++|.|++ ++.++++|+++|...
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 87729999999999999985866799999988099999999999869947899999870997578899999999998761
Q ss_pred C-HHHHHHCCCCCCCCC
Q ss_conf 9-143421189934777
Q 002493 782 N-PKAAESLADPEEYSN 797 (915)
Q Consensus 782 ~-~~~a~~l~~~~~~~~ 797 (915)
+ .++|++|++|+++|.
T Consensus 797 ~~~~~a~~l~~~~~~~~ 813 (814)
T 3mkq_A 797 GKNTVSERVCGAEGLPG 813 (814)
T ss_dssp TCHHHHTTBCCGGGCC-
T ss_pred CCHHHHHHHCCCCCCCC
T ss_conf 64668986379112799
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=432.01 Aligned_cols=549 Identities=13% Similarity=0.186 Sum_probs=408.2
Q ss_pred HHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 55145898779999848999699997699099997899924589771398879999948999999995898699998799
Q 002493 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd~~~ 88 (915)
..+.+|.+.|.+++|+|+++++++|+.||.|++||..+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 925699815899778999949--999999997599299997899905889851488437999990599979999978994
Q 002493 89 MDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
++.+..+..|...|.+++|+| ++.++++++.||.|++||+.++ .+...+.+|...|.+++|+| +++.+++++.||.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECS-STTEEEEEESSSE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCC-CHHHEECCCCCCEEEEEEEC-CCCEEEEEECCCE
T ss_conf 936899958997379999840899659999808970999989996-34220127779788999925-9998999978985
Q ss_pred EEEEECCCCCCCEEEEC-------------CCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCE
Q ss_conf 99998899997069936-------------8888229999767995999999689919999789995899961-776585
Q 002493 167 IKIWNLGSPDPNFTLDA-------------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNV 232 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i 232 (915)
|++||+.++.....+.. ....+.+++|+|++. ++++++ ++.+.+|+..++..+..+. +|...+
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS--EEEEEE-TTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC--EEEEEC-CCCEEEEEECCCCCEEEECCCCCCCE
T ss_conf 999968888655302023210246776445650179999978998--899975-89599999568972357747877760
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCC---------
Q ss_conf 99999189998999986991999958986124463047844899999419997999963890899617885---------
Q 002493 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE--------- 303 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~--------- 303 (915)
.+++|+|++.++++++.+|.|++|++.++.....+..|...+.+++|+|+++.+++++.||.+.+|.....
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 79998278888999947986999986789565322787665689999899998999958972898874665201021133
Q ss_pred -----------------------------------------CEEEECCCCCEEEEEECCEEEEEEEECCCCEECCCCCEE
Q ss_conf -----------------------------------------316862899599996072599996541641010589621
Q 002493 304 -----------------------------------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 304 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
...++.+++..+......- ....|+..++...
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g-------~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG-------AIKIIELPNNRVF 996 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS-------CCEEEETTTTSCE
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCC-------CEEEEECCCCCEE
T ss_conf 103689759986899813776248984476508972567278999958997799986999-------8899975787234
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----CCCCCCEEEEEEECCCCEEEEECCCEEEEECC
Q ss_conf 001221498666871589788998999992-9909999830333----45766136999921984899836974998325
Q 002493 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NRSFGSALEFVWSSDGEYAVRESSSKIKIFSK 417 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~ 417 (915)
..+..+...+..++|+|+|+++++++ ++.+.+|+..... ..+...+.++.|++++.+++...++.+++|+.
T Consensus 997 ----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 997 ----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp ----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET
T ss_pred ----EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEC
T ss_conf ----4303677716899998999989998699879999879996689852787389999908995899978896899888
Q ss_pred CCCCEE-EE--------ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEEE---CCCCEEEECCCCCEEEEEECC
Q ss_conf 751001-23--------057531135348589996489-19998646880889987---111189990899999999498
Q 002493 418 NFQEKR-SV--------RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDT 484 (915)
Q Consensus 418 ~~~~~~-~~--------~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~---~~i~~i~~s~dg~~la~~~~~ 484 (915)
...... .+ ...|+|+ +.+|++++.+ +|++||+.+++.+..+. ..|.++.|+++|.++++++.+
T Consensus 1073 ~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp TTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCEEEEECCCCCCEEEEEECCC----CCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 988655887466884899999899----9989998499948998789850012550687767999997999989998289
Q ss_pred EEE-EEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEECCCCEEEEEECC--E-EEEEEEC
Q ss_conf 199-999148889976627999884453442368676656678568943--789997369859999899--7-8699930
Q 002493 485 SFY-ILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYCVGG--E-VTTMFHL 558 (915)
Q Consensus 485 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~~~~--~-~~~i~~~ 558 (915)
+.+ +|+... +.....-...............+.+.+|.. ..++.. . +.+..+-.. . ...+...
T Consensus 1149 g~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~-g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1149 GEIRIWNVSD---------GQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-G-GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp SCCCEEESSS---------SCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-S-SSEEEBCSSSCBCCCCCCCS
T ss_pred CEEEEEECCC---------CCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEC-C-CEEEEEECCCCCEEEEEECC
T ss_conf 9799998899---------94578851444442102567428999997899989977-9-85999898889500464004
Q ss_pred CCCEEEEEEEEECCEEEEEECCCCEEEEEE
Q ss_conf 343589999740889999916883599993
Q 002493 559 DRPMYLLGYLASQSRVYLIDKEFNVMGYTL 588 (915)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 588 (915)
..++..+.+.+++..++..+.++.++.|.+
T Consensus 1218 ~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1218 GTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCCCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf 775327999789877999668817999764
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=420.85 Aligned_cols=537 Identities=14% Similarity=0.157 Sum_probs=319.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-
Q ss_conf 4589877999984899969999769909999789992458977139887999994899999999589869999879992-
Q 002493 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD- 90 (915)
Q Consensus 12 ~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd~~~~~- 90 (915)
..+.+.+.+++|+|+|++|++++ ++.|++|++.++.....+.+|...|++++|+|+|++|++|+.|+.|++||+.+++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 74068236976679999799679-99799945787242737658998659999999996899994899789948989841
Q ss_pred -EEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf -569981589977899994999999999759----929999789990588985148843799999059997999997899
Q 002493 91 -KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 91 -~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
....+..|.+.|.+++|+|++++|++++.+ +.|++||. + .....+.+|...|.+++|+|.+...+++++.|+
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC--C-CCCCEECCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 5667622557844899989999979999899773669999638--9-976325478898369998899982999992898
Q ss_pred CEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEE
Q ss_conf 4999988999970699368888229999767995999999689919999789995899961-------776585999991
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------GHTHNVSAVCFH 238 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~i~~~ 238 (915)
+|++||....+....+.+|...|.+++|+|++. ++++++.|+.|++||..+++++..+. +|...|.+++|+
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 099997999757665200257169999979999--899998999199988999828665136643235667878999997
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEEECC---CCCEEEEEEECCCCEEEEEECCCEEEEECCCCC-----------C
Q ss_conf 89998999986991999958986124463047---844899999419997999963890899617885-----------3
Q 002493 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE-----------P 304 (915)
Q Consensus 239 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~-----------~ 304 (915)
|++++|++++.|+.|++||+.+++....+..+ ......+.| ++..+++++.+|.+++|..... .
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~ 326 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKA 326 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEECCCCCC
T ss_conf 99999999908980999968887013440478876640689997--3887999958996899968899744698378888
Q ss_pred E--EEECCCCCEEEEEEC--CEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEEE
Q ss_conf 1--686289959999607--259999654164101058962100122149866687158978899899999299099998
Q 002493 305 V--ASMDNSGKIIWAKHN--EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYT 380 (915)
Q Consensus 305 ~--~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~ 380 (915)
+ .++.++++.++.... .++. |+..++...... ...+...+..++|++++.++.++.++.+.+|+
T Consensus 327 v~~l~~spdg~~l~s~s~D~~v~~---------Wd~~~~~~~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 327 ITALSSSADGKTLFSADAEGHINS---------WDISTGISNRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 394 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEE---------EETTTCCEEECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred EEEEEEECCCCEEEEEECCCCEEE---------EECCCCCEEEEC---CCCCCCEEEEEEECCCCCEEEEECCCCEEEEE
T ss_conf 899999189998999958984999---------978879256321---66776507899987899699998489668954
Q ss_pred EECCCC--------CCCCCEEEEEEECCCCEEEEECCCEEEEECCCCCCEEE-------EECCCCCCEEECCCEEEEEEC
Q ss_conf 303334--------57661369999219848998369749983257510012-------305753113534858999648
Q 002493 381 ALAWRN--------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRS-------VRPTFSAERIYGGTLLAMCSN 445 (915)
Q Consensus 381 ~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~~~~~~~~-------~~~~~s~~~i~~g~~La~~~~ 445 (915)
...... ...+....++++++++.++...++.+.+|+.. . ... ....|+|+ |++|++++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~-~-~~~~~~~~~v~~va~spd----g~~lasgs~ 468 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-K-LTEVPISYNSSCVALSND----KQFVAVGGQ 468 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-E-EEEEECSSCEEEEEECTT----SCEEEEEET
T ss_pred CCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECC-C-EEEEECCCCCEEEEEECC----CCEEEEECC
T ss_conf 6885435652120014899707998079969999967639998489-4-346406889549999289----989999689
Q ss_pred C-EEEEEECCCCCEE--EE--EECCCCEEEECCCCCEEEEEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEE
Q ss_conf 9-1999864688088--99--87111189990899999999498199999148889976627999884453442368676
Q 002493 446 D-FICFYDWAECRLI--RR--IDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHE 520 (915)
Q Consensus 446 ~-~i~~~d~~~~~~i--~~--~~~~i~~i~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 520 (915)
+ +|++||+.++.+. .. +...|.++.|+|||++|++++.++.+.+|.-.. . +..........
T Consensus 469 D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~-------~-------~~~~~~~~~~~ 534 (611)
T 1nr0_A 469 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN-------N-------FELAHTNSWTF 534 (611)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG-------T-------TEESCCCCCCC
T ss_pred CCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC-------C-------CCEEEEEEEEE
T ss_conf 973999994599222410157788607999989999899994899899988577-------8-------72232102640
Q ss_pred EEEEEEEEEEEC--CEEEEECCCCEEEEEECCE---EE--EEEEC-CCCEEEEEEEEECCEEEEEECCCCEEEEEEC
Q ss_conf 656678568943--7899973698599998997---86--99930-3435899997408899999168835999935
Q 002493 521 TNERVRTGLWVG--DCFIYNNSSWRLNYCVGGE---VT--TMFHL-DRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (915)
Q Consensus 521 ~~~~i~~~~w~~--~~~i~~~~~~~l~~~~~~~---~~--~i~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 589 (915)
-...|.+.+|.. ..++-....+.+..+.... .. .+... ...+..+.+.+.+. ++....++.+..|.+.
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 466425899899899799997997299997887555632644467656711899858997-9995288778998444
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=417.14 Aligned_cols=534 Identities=22% Similarity=0.334 Sum_probs=380.2
Q ss_pred HHHHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 65551458987799998489996999976990999978999245897713988799999489999999958986999987
Q 002493 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd~ 86 (915)
.+++|.||++.|++++|||||++||+++.|+.|+||| .+++.++.+.+|..+|.+++|+|++++|++++.|+.|++||.
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 9439878998579999989989999993899899997-999789999689899899999899999999969897999989
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 99925699815899778999949999999997599299997899905889851488437999990599979999978994
Q 002493 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+++.+..+.+|...|.+++|+|++++|++++.|+.+++|+.... .......+...+.++.++| +...++.++.++.
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 162 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 162 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC--EEEEECCCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCC--EEEECCCCCCCEEEEEEEC-CCCCCEECCCCCC
T ss_conf -99789999789998899999899998999807983352023552--0011047777435554203-7763200255531
Q ss_pred EEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 99998899997069936888822999976799599999968991999978999589996177658599999189998999
Q 002493 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 246 (915)
+.+|+.. .........+...+.++.++|++. ++++++.|+.|++|+. +++.+..+.+|...|.+++|+|++.++++
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 163 VKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp EEEECTT-SCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EECCCCC-EEEEEECCCCCCCEEEEEECCCCC--EEEEECCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 0000000-000000268776356654169977--8999859998999949-99689999468898899999799999999
Q ss_pred EECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCCEE------------EECCCCCE
Q ss_conf 986991999958986124463047844899999419997999963890899617885316------------86289959
Q 002493 247 GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA------------SMDNSGKI 314 (915)
Q Consensus 247 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~------------~~~~~~~~ 314 (915)
++.|+.|++|+. +++.+..+..+...+.+++|+|+++.+++++.++.+++|........ ++.+++..
T Consensus 239 ~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 239 ASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317 (577)
T ss_dssp EETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 918998999959-9979999806889879999968999999995999799994899589997068897699999999999
Q ss_pred EEEEE--CCEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----CC
Q ss_conf 99960--72599996541641010589621001221498666871589788998999992-9909999830333----45
Q 002493 315 IWAKH--NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NR 387 (915)
Q Consensus 315 ~~~~~--~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~~ 387 (915)
+.... +.+.. |+... ..+ ..+..+...+..++|+|+|+++++++ ++.+.+|+..... ..
T Consensus 318 l~t~~~d~~i~~---------w~~~~-~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 318 IASASDDKTVKL---------WNRNG-QHL----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp EEEEETTSCEEE---------EETTS-CEE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred EEEEECCCEEEE---------EECCC-CEE----EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 999969995999---------96999-725----7874788977999998999999999699989999089978998527
Q ss_pred CCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCCEEEEE--------CCCCCCEEECCCEEEEEECC-EEEEEECCCCC
Q ss_conf 766136999921984899836-974998325751001230--------57531135348589996489-19998646880
Q 002493 388 SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAECR 457 (915)
Q Consensus 388 ~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~ 457 (915)
+...+.+++|+|+++++++++ ++.|++|+.+.+....+. ..|+|+ +.+|++++.+ .+.+||. +++
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEET-TSC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCC----CCEEEEECCCCEEEEEEC-CCC
T ss_conf 889748999989999999994999899996999789896288997579999899----999999939998999979-998
Q ss_pred EEEEEE---CCCCEEEECCCCCEEEEEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--
Q ss_conf 889987---111189990899999999498199999148889976627999884453442368676656678568943--
Q 002493 458 LIRRID---VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG-- 532 (915)
Q Consensus 458 ~i~~~~---~~i~~i~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~-- 532 (915)
.+..+. ..+.++.|+|++++|++++.++.+.+|-. . +. ....+..-...|.+.+|..
T Consensus 459 ~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~---------~-------~~--~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---------N-------GQ--LLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET---------T-------SC--EEEEEECCSSCEEEEEECTTS
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC---------C-------CC--EEEEEECCCCCEEEEEECCCC
T ss_conf 89997278997789999699999999919897999939---------9-------97--899986799998999991899
Q ss_pred CEEEEECCCCEEEEEE--CCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCEEEEE
Q ss_conf 7899973698599998--997869993034358999974088999991688359999
Q 002493 533 DCFIYNNSSWRLNYCV--GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYT 587 (915)
Q Consensus 533 ~~~i~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 587 (915)
.+++.....+.+..+- +.....+..+..++.-+.+.|++..++....++.+..|+
T Consensus 521 ~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 999999896999999699978989718888878999968999999990899999969
No 5
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=413.71 Aligned_cols=691 Identities=17% Similarity=0.218 Sum_probs=431.1
Q ss_pred CEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 24589771398879999948999999995898699998799925699815899778999949999999997599299997
Q 002493 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd 127 (915)
...+.+.+|...|.+++|+|++++|++++.+|.|++|++.+++.+..+..|..+|++++|+|++++|++++.||.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 50004505898568999889999899994799899998999916778733899688999968999899992899499998
Q ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEECCCC-CCCEEEECCCCCEEEEEEEE-CCCCCEEEEE
Q ss_conf 899905889851488437999990599979999978994999988999-97069936888822999976-7995999999
Q 002493 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~~~l~~~ 205 (915)
+.++ .....+.+|...|.+++|+| ++..+++++.||.|++|++.++ .....+..|...+.+++|+| ++. +++++
T Consensus 84 ~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~ 159 (814)
T 3mkq_A 84 YNTG-EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASG 159 (814)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE--EEEEE
T ss_pred CCCC-CEEEEEECCCCCEEEEEEEC-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEE
T ss_conf 9999-58799816899789999958-99989999289989999899995487998379986889999769999--99999
Q ss_pred ECCCEEEEEECCCCCEEEEECCCC-CCEEEEEEEC--CCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 689919999789995899961776-5859999918--9998999986991999958986124463047844899999419
Q 002493 206 SDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHP--ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+.||.|++||+.++.....+..+. ..+.+++|+| +++++++++.||.|++||+.+++....+..|...+.+++|+|+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred ECCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
T ss_conf 48894999989999610698358889779999997799989999938997999999999188998478888789998599
Q ss_pred CCEEEEEECCCEEEEECCCCCCEE-EE------------CCCCC--EEEE-EECCEEEEEEEECCCCEECCCCCEEEEEE
Q ss_conf 997999963890899617885316-86------------28995--9999-60725999965416410105896210012
Q 002493 283 SRRIVIGYDEGTIMVKIGREEPVA-SM------------DNSGK--IIWA-KHNEIQTVNIKSVGADYEVTDGERLPLAV 346 (915)
Q Consensus 283 ~~~l~~g~~dg~i~i~~~~~~~~~-~~------------~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~g~~~~~~~ 346 (915)
++.+++++.||.+++|........ .+ .+++. ++.. ..+.+..+
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 298 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL--------------------- 298 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE---------------------
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEE---------------------
T ss_conf 99999990899699998999947778406888679999924999509999907987999---------------------
Q ss_pred EECCCCCCCCCEEEECCCCCEEEEECCC----CEEEEEEE------CCC---------CCCCCCEEEEEEECCCCEEEEE
Q ss_conf 2149866687158978899899999299----09999830------333---------4576613699992198489983
Q 002493 347 KELGTCDLYPQSLKHNPNGRFVVVCGDG----EYIIYTAL------AWR---------NRSFGSALEFVWSSDGEYAVRE 407 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~s~~g~~lav~~~~----~~~i~~~~------~~~---------~~~~~~~~~~~~s~dg~~l~~~ 407 (915)
.+. .....+.++|+|+.+++++.. .+...... ... ......+.+++|+|+|+++++.
T Consensus 299 -~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~ 374 (814)
T 3mkq_A 299 -SLG---NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVV 374 (814)
T ss_dssp -ECS---CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEE
T ss_pred -ECC---CCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEE
T ss_conf -767---9974167779987899776366411246653046555556762014651178876577406899999989994
Q ss_pred CCCEEEEECCCCCCEEE---E-ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEEECCCCEEEECCCC---CEEE
Q ss_conf 69749983257510012---3-057531135348589996489-19998646880889987111189990899---9999
Q 002493 408 SSSKIKIFSKNFQEKRS---V-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSG---DLVA 479 (915)
Q Consensus 408 ~~~~i~i~~~~~~~~~~---~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~~i~~i~~s~dg---~~la 479 (915)
+++.+.+|+........ + ...|+|+ +.++++++.+ .+.+|+.- ......+..+.|++++ ..++
T Consensus 375 ~~~~~~i~~~~~~~~~~~~~i~~~~~spd----g~~la~~~~~g~v~l~~~~-----~~~~~~v~~~~~s~dg~~~~~l~ 445 (814)
T 3mkq_A 375 GDGEYVIYTALAWRNKAFGKCQDFVWGPD----SNSYALIDETGQIKYYKNF-----KEVTSWSVPMHSAIDRLFSGALL 445 (814)
T ss_dssp ETTEEEEEETTTTEEEEEEECSEEEECTT----SSCEEEECTTCCEEEEETT-----EECTTCCCCCSSCCCEEECSSSE
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECC----CCEEEEEECCCCEEEEECC-----CCCCCEEECCCCCCCCEECCEEE
T ss_conf 29889999874544567995479999479----9859999689839999777-----77524397378675523654699
Q ss_pred EEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEE------CCCCEEEEEECC-
Q ss_conf 99498199999148889976627999884453442368676656678568943--789997------369859999899-
Q 002493 480 IASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYN------NSSWRLNYCVGG- 550 (915)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~------~~~~~l~~~~~~- 550 (915)
+++.++.+.+|- +.. + ..+..+........|.. ..++.. .......+....
T Consensus 446 ~~~~d~~v~~~d--------~~~-------~-----~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~ 505 (814)
T 3mkq_A 446 GVKSDGFVYFFD--------WDN-------G-----TLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKD 505 (814)
T ss_dssp EEEETTEEEEEC--------TTT-------C-----CEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHH
T ss_pred EEECCCEEEEEE--------CCC-------C-----CEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCEEEEEEECHH
T ss_conf 996699899999--------876-------9-----59999735888799969999999998676667742899995468
Q ss_pred -------------------EEEEEEECCCCEE-------EEEEEEECCEEEEEECCCCEEEEEECCHH--HHHHHHHHCC
Q ss_conf -------------------7869993034358-------99997408899999168835999935027--8787999805
Q 002493 551 -------------------EVTTMFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSL--IEYKTLVMRG 602 (915)
Q Consensus 551 -------------------~~~~i~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~l~~~~--~~~~~~~~~~ 602 (915)
....+........ ++-+....+++..+-..-......+...+ ..|...--+-
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 585 (814)
T 3mkq_A 506 AYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKV 585 (814)
T ss_dssp HHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGGGTEE
T ss_pred HHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEECCEEEEEEECCCCEEEEEEEECCCEE
T ss_conf 86666641687621250222136457642787659808889997688708999698668999989667999998329999
Q ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH-CCCCC------CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98889635699994117899999993998366542-14586------630230001399889999999809956899999
Q 002493 603 DLERANEILPSIPKEHHNSVARFLESRGMIEEAIE-VATDP------DYRFELAIQLGRLEVAQEIATEVQSESKWKQLG 675 (915)
Q Consensus 603 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~-~~~~~------~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la 675 (915)
.+-+.......................+..+.|.+ +.... .....+..++|.+++|+++++ ++ ..-.
T Consensus 586 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~---~~---~~~f 659 (814)
T 3mkq_A 586 YLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISP---DQ---DQKF 659 (814)
T ss_dssp EEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCC---CH---HHHH
T ss_pred EEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEECCC---CC---CHHE
T ss_conf 99928888799998909999969987079999998887428846789999999986898689605278---93---1425
Q ss_pred HHHHHCCCHHHHHHH----------------HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
Q ss_conf 999974991158899----------------9881895414778772299888999999999929923988999972998
Q 002493 676 ELAMSTGKLEMAEGC----------------MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKL 739 (915)
Q Consensus 676 ~~al~~~~~~~A~~~----------------y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~ 739 (915)
+.++..++++.|.++ +.+.++++.+.++|...+|.+++..+..+....++...+...++..|++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~ 739 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKF 739 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred EHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
T ss_conf 02145099999999998617676899999999984998999999987027135589987729999999999999985866
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8999999987992578998885099607899999998542009143421189934--77763247999988888740259
Q 002493 740 EDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEE--YSNLFDDWQVALAVESKAAATRG 817 (915)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 817 (915)
+.|..+|++++++++|++|.+..+. |.+++. +|+.+. |.+ .+.+...|+++|+..+.++.|..
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~~~~---------~~~A~~-----lA~~~~-~~~~~i~~~~~~~~~~L~~~~~~~~a~~ 804 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIKSQR---------FSEAAF-----LGSTYG-LGDNEVNDIVTKWKENLILNGKNTVSER 804 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHH-----HHHHTT-CCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHH-----HHHHHC-CCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 7999999880999999999998699---------478999-----998709-9757889999999999876164668986
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=411.47 Aligned_cols=500 Identities=15% Similarity=0.239 Sum_probs=384.8
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEEC--CCCEEEEEECCCEEEE
Q ss_conf 56555145898779999848999699997699099997899924589771398879999948--9999999958986999
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~g~~dg~i~i 83 (915)
+....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+| ++..+++|+.|+.|++
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEE
T ss_conf 78887606777789999926999899981899599987799936899958997379999840899659999808970999
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEEC-------------CCCCEEEEEE
Q ss_conf 987999256998158997789999499999999975992999978999058898514-------------8843799999
Q 002493 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------------HSHYVMQVTF 150 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~ 150 (915)
||+.+++....+.+|.+.|.+++|+|+++++++++.||.|++||+.++. ....+.. ....+.+++|
T Consensus 728 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-ERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE-EEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-CCCEECCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 9899963422012777978899992599989999789859999688886-553020232102467764456501799999
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCCCCEEEE-CCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC
Q ss_conf 05999799999789949999889999706993-68888229999767995999999689919999789995899961776
Q 002493 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (915)
+| ++..+++++ ++.+.+|++.++.....+. .|...+.+++|+|++. ++++++.++.|++|++.++..+..+.+|.
T Consensus 807 s~-dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 807 SA-DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CT-TSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT--EEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred CC-CCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEECCCCC
T ss_conf 78-998899975-895999995689723577478777607999827888--89999479869999867895653227876
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEE-------------------------------------EEEECCCC
Q ss_conf 58599999189998999986991999958986124-------------------------------------46304784
Q 002493 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-------------------------------------NTLNYGLE 272 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~ 272 (915)
..|.+++|+|+++.+++++.||.|++|++.+.... .....+..
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCC
T ss_conf 65689999899998999958972898874665201021133103689759986899813776248984476508972567
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEECCCCCC-------------EEEECCCCCEEEEEE--CCEEEEEEEECCCCEECC
Q ss_conf 48999994199979999638908996178853-------------168628995999960--725999965416410105
Q 002493 273 RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP-------------VASMDNSGKIIWAKH--NEIQTVNIKSVGADYEVT 337 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~-------------~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 337 (915)
.+.+++++|+++.+++|+.+|.+.+|...... ...+.+++..+.... +.+.. |+..
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v---------wd~~ 1033 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV---------WNWQ 1033 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE---------EETT
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEE---------EECC
T ss_conf 2789999589977999869998899975787234430367771689999899998999869987999---------9879
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCC-----CCCCCEEEEEEECCCCEEEEEC-CCE
Q ss_conf 8962100122149866687158978899899999299099998303334-----5766136999921984899836-974
Q 002493 338 DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN-----RSFGSALEFVWSSDGEYAVRES-SSK 411 (915)
Q Consensus 338 ~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~-~~~ 411 (915)
+++... ...+...+..+.++|++.+++.+.++.+.+|+....+. .+.+.+.+++|+|+++++++++ ++.
T Consensus 1034 ~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1034 TGDYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp TTEEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC
T ss_pred CCCEEE-----EECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 996689-----852787389999908995899978896899888988655887466884899999899998999849994
Q ss_pred EEEECCCCCCE-------E-EE-ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEE------------ECCCCEE
Q ss_conf 99832575100-------1-23-057531135348589996489-1999864688088998------------7111189
Q 002493 412 IKIFSKNFQEK-------R-SV-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRI------------DVTVKNL 469 (915)
Q Consensus 412 i~i~~~~~~~~-------~-~~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~------------~~~i~~i 469 (915)
|++|+...... . .+ ...|+|+ |.+|++++.+ .|++||+.+++.+..+ ...|..+
T Consensus 1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d----g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp CCEECSSSSSCSBCCCCCSSCEEEEEECSS----SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCC----CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 899878985001255068776799999799----9989998289979999889994578851444442102567428999
Q ss_pred EECCCCCEEEEEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEECCCCEEEEE
Q ss_conf 990899999999498199999148889976627999884453442368676656678568943--789997369859999
Q 002493 470 YWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYC 547 (915)
Q Consensus 470 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~ 547 (915)
.|++||.++++++ ..+.+|+... + .....+.. ....+.+..|.. ..++.....+.+..+
T Consensus 1185 ~fs~dg~~l~s~~-g~v~vwd~~~---------g------~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1185 CFSPDSKTLVSAG-GYLKWWNVAT---------G------DSSQTFYT---NGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp EECTTSSCEEEES-SSEEEBCSSS---------C------BCCCCCCC---SSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred EECCCCCEEEECC-CEEEEEECCC---------C------CEEEEEEC---CCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 9978999899779-8599989888---------9------50046400---47753279997898779996688179997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=408.86 Aligned_cols=463 Identities=16% Similarity=0.196 Sum_probs=346.6
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC--CEEEEEEECCCCEEEEEEECCCCEEEEEECC----C
Q ss_conf 565551458987799998489996999976990999978999--2458977139887999994899999999589----8
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTELPVRSAKFVARKQWVVAGADD----M 79 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~d----g 79 (915)
.....+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++ .....+..|.++|.+++|+|+++.|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 42737658998659999999996899994899789948989841566762255784489998999997999989977366
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEE
Q ss_conf 699998799925699815899778999949999-9999975992999978999058898514884379999905999799
Q 002493 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 158 (915)
.|++|+ +++....+.+|...|.+++|+|+++ .|++++.|++|++||...+ .+...+.+|...|.+++|+| +++++
T Consensus 130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-dg~~l 205 (611)
T 1nr0_A 130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLF 205 (611)
T ss_dssp EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred EEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCC-EEEEEECCCCCCEEEEEECC-CCCEE
T ss_conf 999963--899763254788983699988999829999928980999979997-57665200257169999979-99989
Q ss_pred EEEECCCCEEEEECCCCCCCEEEE-------CCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC---
Q ss_conf 999789949999889999706993-------6888822999976799599999968991999978999589996177---
Q 002493 159 ASASLDRTIKIWNLGSPDPNFTLD-------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH--- 228 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 228 (915)
++++.|++|++||+.+++....+. +|...|.+++|+|++. ++++++.|+.|++||+.+++++..+..+
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 99989991999889998286651366432356678789999979999--9999908980999968887013440478876
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCCEEE-
Q ss_conf 6585999991899989999869919999589861244630478448999994199979999638908996178853168-
Q 002493 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS- 307 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~~~- 307 (915)
......+.| ++..+++++.|+.+++|+..+++....+..|...|++++|+|++++|++++.||.+++|.........
T Consensus 284 ~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 284 EDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred CCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 640689997--388799995899689996889974469837888889999918999899995898499997887925632
Q ss_pred -------------ECCCCCEEEEE-ECCEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECC
Q ss_conf -------------62899599996-0725999965416410105896210012214986668715897889989999929
Q 002493 308 -------------MDNSGKIIWAK-HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGD 373 (915)
Q Consensus 308 -------------~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~ 373 (915)
+.+++.++... .+.++. |+...+........ .......+..++++|+|+.++++.+
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~---------w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKV---------VPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEE---------ECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEEES
T ss_pred CCCCCCCEEEEEEECCCCCEEEEECCCCEEE---------EECCCCCCCCCCEE-EEECCCCCCEEEEECCCCEEEEEEC
T ss_conf 1667765078999878996999984896689---------54688543565212-0014899707998079969999967
Q ss_pred CCEEEEEEECC-CCCCCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCCEE---------EEE-CCCCCCEEECCCEEE
Q ss_conf 90999983033-345766136999921984899836-974998325751001---------230-575311353485899
Q 002493 374 GEYIIYTALAW-RNRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKR---------SVR-PTFSAERIYGGTLLA 441 (915)
Q Consensus 374 ~~~~i~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~---------~~~-~~~s~~~i~~g~~La 441 (915)
+.+.+|+.... .......+.+++|+|||+++++++ ++.|++|++...... .+. ..|+|+ |++|+
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspd----g~~la 507 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN----GAFLV 507 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT----SSEEE
T ss_pred CEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCC----CCEEE
T ss_conf 63999848943464068895499992899899996899739999945992224101577886079999899----99899
Q ss_pred EEECC-EEEEEECCC-CCEEEE-----EECCCCEEEECCCCCEEEEEECCEEEEEE
Q ss_conf 96489-199986468-808899-----87111189990899999999498199999
Q 002493 442 MCSND-FICFYDWAE-CRLIRR-----IDVTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 442 ~~~~~-~i~~~d~~~-~~~i~~-----~~~~i~~i~~s~dg~~la~~~~~~~~~~~ 490 (915)
+++.+ ++++|++.+ ++++.. +...|.+++|+|||++|++++.|+.+.+|
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 99489989998857787223210264046642589989989979999799729999
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=396.59 Aligned_cols=456 Identities=25% Similarity=0.399 Sum_probs=362.5
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 56555145898779999848999699997699099997899924589771398879999948999999995898699998
Q 002493 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd 85 (915)
+..+.+.+|.+.|.+++|+|++++|++++.|+.|+|||. +++.+..+.+|..+|.+++|+|++++|++++.|+.+++|+
T Consensus 48 ~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~ 126 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 789999689899899999899999999969897999989-9978999978999889999989999899980798335202
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 79992569981589977899994999999999759929999789990588985148843799999059997999997899
Q 002493 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 165 (915)
... ........+...+.++.++|++..++.++.++.+.+|+.... .......+...+.++.++| ++..+++++.|+
T Consensus 127 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 202 (577)
T 2ymu_A 127 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSP-DGQTIASASDDK 202 (577)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--EEEEEECCSSCEEEEEECT-TSSCEEEEETTS
T ss_pred CCC-CEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEE--EEEECCCCCCCEEEEEECC-CCCEEEEECCCC
T ss_conf 355-200110477774355542037763200255531000000000--0000268776356654169-977899985999
Q ss_pred CEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 49999889999706993688882299997679959999996899199997899958999617765859999918999899
Q 002493 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 245 (915)
.|++|+. +++....+..|...+.+++|+|++. ++++++.|+.|++|+. +++.+..+.+|...|.+++|+|+++.++
T Consensus 203 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~ 278 (577)
T 2ymu_A 203 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIA 278 (577)
T ss_dssp EEEEECT-TSCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEEC-CCCEEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 8999949-9968999946889889999979999--9999918998999959-9979999806889879999968999999
Q ss_pred EEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCCE------------EEECCCCC
Q ss_conf 998699199995898612446304784489999941999799996389089961788531------------68628995
Q 002493 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV------------ASMDNSGK 313 (915)
Q Consensus 246 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~i~~~~~~~~------------~~~~~~~~ 313 (915)
+++.|+.|++|+. +++....+..|...+++++|+|+++.+++++.||.+++|......+ ..+.+++.
T Consensus 279 ~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 279 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp EEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 9959997999948-995899970688976999999999999999699959999699972578747889779999989999
Q ss_pred EEEEEECC--EEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----C
Q ss_conf 99996072--599996541641010589621001221498666871589788998999992-9909999830333----4
Q 002493 314 IIWAKHNE--IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----N 386 (915)
Q Consensus 314 ~~~~~~~~--i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~ 386 (915)
.+...... +..+ + .+++.+ ..+..+...+..++|+|+|++|++++ ++.+.+|+..... .
T Consensus 358 ~l~~~~~dg~v~~~---------~-~~~~~~----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 358 TIASASDDKTVKLW---------N-RNGQLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp EEEEEETTSEEEEE---------E-TTCCEE----EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCEEEEE---------C-CCCCEE----EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 99999699989999---------0-899789----985278897489999899999999949998999969997898962
Q ss_pred CCCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCCEEEEE--------CCCCCCEEECCCEEEEEECC-EEEEEECCCC
Q ss_conf 5766136999921984899836-974998325751001230--------57531135348589996489-1999864688
Q 002493 387 RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAEC 456 (915)
Q Consensus 387 ~~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~ 456 (915)
.+...+.+++|+|+++++++.+ ++.|++|+.+.+....+. ..|+|+ +++|++++.+ .|++|| .++
T Consensus 424 ~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd----~~~las~~~d~~i~iw~-~~~ 498 (577)
T 2ymu_A 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWN-RNG 498 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTT----SCEEEEEETTSEEEEEE-TTS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC----CCEEEEEECCCEEEEEC-CCC
T ss_conf 8899757999989999999993999899997999889997278997789999699----99999991989799993-999
Q ss_pred CEEEEEEC---CCCEEEECCCCCEEEEEECCEEEEEE
Q ss_conf 08899871---11189990899999999498199999
Q 002493 457 RLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 457 ~~i~~~~~---~i~~i~~s~dg~~la~~~~~~~~~~~ 490 (915)
++++.+.+ .|.+++|+|+|++|++++.|+.+.+|
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 7899986799998999991899999999896999999
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=369.77 Aligned_cols=467 Identities=12% Similarity=0.081 Sum_probs=341.5
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 14589877999984899969999769909999789992458977139887999994899999999589869999879992
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 11 l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~g~~dg~i~iwd~~~~~ 90 (915)
..+|.+.|.+++|+|++.+||+|+.||.|+||+....+....+. |..+|.+++|+| +++|++++.|+.|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC-CCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCC
T ss_conf 16889984899997999989999297989999689947999868-999779999908-9889999895959999899996
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE----------EEEECCCCCEEEEEECCCCCCEEEE
Q ss_conf 569981589977899994999999999759929999789990588----------9851488437999990599979999
Q 002493 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT----------QIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 91 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~v~~~~~~p~~~~~l~~ 160 (915)
.+..+. |...|++++|+|+++++++|+.||.|++||++++.... ..+.+|...|.+++|+|.+...+++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 899974-8998799998799998999949992999999999626503043210002544578973899976699998999
Q ss_pred EECCCCEEEEECCCCCCCEEEECC------------------CCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 978994999988999970699368------------------88822999976799599999968991999978999589
Q 002493 161 ASLDRTIKIWNLGSPDPNFTLDAH------------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
++.|+.| +||+++++....+..| ...|.+++|+|++. ++++++.|+.|++||+++++++
T Consensus 170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~--~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS--EEEEEETTCCEEEEETTTCCEE
T ss_pred EECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEE
T ss_conf 9189849-998778965799833557767776544332345677768999859999--9999989993999987899688
Q ss_pred EE--EC---C-------------CCCCEEEEEEEC----CC-CEEEEEECC-----CCEEEEECC---------------
Q ss_conf 99--61---7-------------765859999918----99-989999869-----919999589---------------
Q 002493 223 QT--LE---G-------------HTHNVSAVCFHP----EL-PIIITGSED-----GTVRIWHAT--------------- 259 (915)
Q Consensus 223 ~~--~~---~-------------~~~~i~~i~~~~----~~-~~l~~~~~d-----g~i~iwd~~--------------- 259 (915)
.. +. . +...|.+++|++ ++ .++++|+.+ ..+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 88850123457877767888855567745799973499988789996887777888528999547898755542556546
Q ss_pred ---CCCEEEEEE-CCCCCEEEEEEEC----------CCCEEEEEECCCEEEEECCCCCCEEEECCCC-CEEEEEECCEEE
Q ss_conf ---861244630-4784489999941----------9997999963890899617885316862899-599996072599
Q 002493 260 ---TYRLENTLN-YGLERVWAIGYMK----------SSRRIVIGYDEGTIMVKIGREEPVASMDNSG-KIIWAKHNEIQT 324 (915)
Q Consensus 260 ---~~~~~~~~~-~~~~~v~~i~~~~----------~~~~l~~g~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 324 (915)
+.+....+. .+...+..+.+.+ +...+++++.+|.+++|.............. ..+......+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred HHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 64174522787418999547999977889886778785069999179848999789998556555689852235897248
Q ss_pred EEEEEC-CCCEECC-CCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCCC---------------
Q ss_conf 996541-6410105-89621001221498666871589788998999992-99099998303334---------------
Q 002493 325 VNIKSV-GADYEVT-DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN--------------- 386 (915)
Q Consensus 325 ~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~--------------- 386 (915)
..+... ...|... +.. ......+..+...+..++|+|+|++|++++ |+.+.+|+......
T Consensus 407 ~~~s~~~~~~w~~~~~~~--~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAA--QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEHHHHHHHHHTT--BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred EEEEECCHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCC
T ss_conf 999974999998888604--699975457857787533366675899965898389997877645677367750154137
Q ss_pred -CCCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCC-------------------------------------------
Q ss_conf -5766136999921984899836-9749983257510-------------------------------------------
Q 002493 387 -RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE------------------------------------------- 421 (915)
Q Consensus 387 -~~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~------------------------------------------- 421 (915)
.+...+.+++|+|+++++++++ +++|++|+.....
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQG 564 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78887646999638999699994585799999248655575455778665113455134679654322423689887776
Q ss_pred ---EEEE-------E-CCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEEE---------CCCCEEEEC-----CCC
Q ss_conf ---0123-------0-57531135348589996489-19998646880889987---------111189990-----899
Q 002493 422 ---KRSV-------R-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---------VTVKNLYWA-----DSG 475 (915)
Q Consensus 422 ---~~~~-------~-~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~---------~~i~~i~~s-----~dg 475 (915)
...+ . .+|+|+ | +||+++.| +|++||+.++..+.+.. ..|++++|+ +||
T Consensus 565 ~~~~~~l~~h~~~V~svafSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 565 FMPSTAVHANKGKTSAINNSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp EEEEEEECCCSCSEEEEEECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCEEEEEECCCCCEEEEEECCC----C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCC
T ss_conf 0146999868886779996487----6-8999958976999988898399970246726466661399999998417898
Q ss_pred ---CEEEEEECCEEEEEE
Q ss_conf ---999999498199999
Q 002493 476 ---DLVAIASDTSFYILK 490 (915)
Q Consensus 476 ---~~la~~~~~~~~~~~ 490 (915)
.+|++++.|+.+++|
T Consensus 640 ~~~~~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITY 657 (902)
T ss_dssp SEEEEEEEEETTSEEEEE
T ss_pred CCCEEEEEEECCCCEEEE
T ss_conf 763389999568739999
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=367.16 Aligned_cols=539 Identities=12% Similarity=0.102 Sum_probs=403.3
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCC----CEEEEEEECCCC-EEEEEEEC--CCCEEEEEECCCEEEE
Q ss_conf 1458987799998489996999976990999978999----245897713988-79999948--9999999958986999
Q 002493 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELP-VRSAKFVA--RKQWVVAGADDMFIRV 83 (915)
Q Consensus 11 l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~-v~~i~~~~--~~~~l~~g~~dg~i~i 83 (915)
-..|.+.|.+++|+|++++|++++ ++.|.+|++.++ +....+.+|... |.+++|+| ++++|++++.||.|++
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 877658536899889999799935-9849999777887765143188057884499999796789988999648987999
Q ss_pred EECCCC--------CEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 987999--------2569981589977899994999999999759----9299997899905889851488437999990
Q 002493 84 YNYNTM--------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 84 wd~~~~--------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 151 (915)
|++.++ +....+..|...|.+++|+|+++++++++.+ +.|.+|+ .+ .....+.+|...|.++.|+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~-~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG-NSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC-CEEEECCSCSSCEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CC-CCCEEEECCCCCEEEEEEC
T ss_conf 76888765544554200011125663799999079998999316877755799997--89-8103130677438899988
Q ss_pred CCCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCC---CEEEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEE-
Q ss_conf 59997-999997899499998899997069936888---8229999767-99599999968991999978999589996-
Q 002493 152 PKDTN-TFASASLDRTIKIWNLGSPDPNFTLDAHQK---GVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTL- 225 (915)
Q Consensus 152 p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 225 (915)
| ++. .+++++.|+.|++||+.+++....+..|.. .+.+++|+|+ +. ++++++.|+.|++||+++++.+..+
T Consensus 170 ~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 170 Q-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--FVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp S-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC--EEEEEETTCCEEEEETTTCCEEEECC
T ss_pred C-CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCC--EEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 7-89968999957995999969996101320256777742899997897788--89998689808999899997858952
Q ss_pred C---CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECC----CCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 1---77658599999189998999986991999958986124463047----8448999994199979999638908996
Q 002493 226 E---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 226 ~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~g~~dg~i~i~ 298 (915)
. .|...|.+++|+ ++.++++++.||.|++||+.+++....+..+ ...+.++.|. ++..+++++.+|.+.+|
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred CCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEE
T ss_conf 5444567755899981-899799984899489997888927878847877545714699918-99769999789978999
Q ss_pred CCCCCCE-EEECCCCCEEEEEECCEEEEEEEECCCCEECCCCCEEEE---EEEECCCCCCCCCEEEECCCCCEEEEE-CC
Q ss_conf 1788531-686289959999607259999654164101058962100---122149866687158978899899999-29
Q 002493 299 IGREEPV-ASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPL---AVKELGTCDLYPQSLKHNPNGRFVVVC-GD 373 (915)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~l~~s~~g~~lav~-~~ 373 (915)
....... ..+.... ..+....+ .. ......+|..... ... ..+...+..+.|++ +..++++ .+
T Consensus 325 d~~~~~~~~~~~~~~-------~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~~~-~~~l~~~~~d 392 (615)
T 1pgu_A 325 ELGHDEVLKTISGHN-------KGITALTV-NP-LISGSYDGRIMEWSSSSMH--QDHSNLIVSLDNSK-AQEYSSISWD 392 (615)
T ss_dssp ETTEEEEEEEECCCS-------SCEEEEET-TT-TEEEETTSCEEETTTTEEE--CCCCSCEEEEECCS-TTCCEEEETT
T ss_pred ECCCCCEEEEEECCC-------CCEEEEEE-CC-CEEECCCCEEEEEECHHHC--CCCCCCEEEEEECC-CCEEEEEECC
T ss_conf 888992889994777-------87899995-67-4898799959998752415--75568517999789-8679999589
Q ss_pred CCEEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCEEEEECCCCC-CEEEEECCCCCCEEE-CCCEEEEEEC-C-EEE
Q ss_conf 90999983033345766136999921984899836974998325751-001230575311353-4858999648-9-199
Q 002493 374 GEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVRPTFSAERIY-GGTLLAMCSN-D-FIC 449 (915)
Q Consensus 374 ~~~~i~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~~~~-~~~~~~~~~s~~~i~-~g~~La~~~~-~-~i~ 449 (915)
+.+.+|+....+... ....+++++++.+++...++.+.+|+.... ....+...+.+..+. .+.+|++++. + .++
T Consensus 393 ~~i~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGS--QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSS--CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred CCEEEEECCCCCCCC--CCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEEEEEECCCCEEE
T ss_conf 979998866676367--846999828987899967982699944678665551567872077883888999656898699
Q ss_pred EEECCCCCEE-EEEE---CCCCEEEECCCCCEEEEEECCEEEEEE-ECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9864688088-9987---111189990899999999498199999-1488899766279998844534423686766566
Q 002493 450 FYDWAECRLI-RRID---VTVKNLYWADSGDLVAIASDTSFYILK-YNRDVVSAYLDSGKPVDEQGVEDAFELLHETNER 524 (915)
Q Consensus 450 ~~d~~~~~~i-~~~~---~~i~~i~~s~dg~~la~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 524 (915)
+||+.+++.. ..+. ..|.++.|++++++|++++.++.+.+| .... .....+... ....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~--h~~~ 533 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------------EVKTSRWAF--RTSK 533 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------EEEECCSCC--CSSC
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCC---------------CCEEEEECC--CCCC
T ss_conf 99888854353336776575079999899998998179985998657777---------------624676047--8871
Q ss_pred EEEEEE------------ECCEEEEECCCCEEEEEECCEE-EEEEE---CCCCEEEEEEEEECCEEEEEECCCCEEEEEE
Q ss_conf 785689------------4378999736985999989978-69993---0343589999740889999916883599993
Q 002493 525 VRTGLW------------VGDCFIYNNSSWRLNYCVGGEV-TTMFH---LDRPMYLLGYLASQSRVYLIDKEFNVMGYTL 588 (915)
Q Consensus 525 i~~~~w------------~~~~~i~~~~~~~l~~~~~~~~-~~i~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 588 (915)
+.+.+| ++.+++.....+.+..+..... ..+.. ....+.-+.+.+++. ++....++.+..|.+
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEEECCCCEEEEEEE
T ss_conf 4699976832345332468888999817971999977888540311335943058999738997-288459963999960
Q ss_pred CC
Q ss_conf 50
Q 002493 589 LL 590 (915)
Q Consensus 589 ~~ 590 (915)
..
T Consensus 613 ~~ 614 (615)
T 1pgu_A 613 VL 614 (615)
T ss_dssp C-
T ss_pred EC
T ss_conf 15
Done!