BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002494
(915 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 29/268 (10%)
Query: 414 CVWG----PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
VWG PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVRGVAFS-PDGQ-T 235
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V + Q I S + D +K W +
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVA--FRPDGQTIASASDDKTVKLWNRN 292
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
L + + W +A+S DG + S K + WN G +T +G
Sbjct: 293 GQLLQTLTGHSSSVWG--VAFSPDGQTIASASDDKT----VKLWNR-NGQHLQTLTGHSS 345
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGSLL 647
GV F +A D+ +K W+ N +L T+ G +S R + F+ +G +
Sbjct: 346 SVWGVA-FSPDGQTIASASDDKTVKLWNR-NGQLLQTLT---GHSSSVRGVAFSPDGQTI 400
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEGRA 675
A + D +K L N +G +LL+ L G +
Sbjct: 401 ASASDDKTVK-LWNRNG-QLLQTLTGHS 426
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+++ ++AH V +AF+ P+ Q I + DDK +K+W+ G+ T GH + V+
Sbjct: 6 VKERNRLEAHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 62
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
V Q I S + D +K W + L + + + +A+S DG + S
Sbjct: 63 VA--FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS---VRGVAFSPDGQTIASAS 117
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620
K + WN G + +T +G GV F +A D+ +K W+ N
Sbjct: 118 DDKT----VKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLWNR-NG 170
Query: 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675
+L T+ G + + F+ +G +A + D +K L N +G +LL+ L G +
Sbjct: 171 QLLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVK-LWNRNG-QLLQTLTGHS 221
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV + PDG + A V L+ N G+L Q L H V +AF+ P+ Q
Sbjct: 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLT--GHSSSVWGVAFS-PDDQ-T 440
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I + DDK +K+W+ G+ T GH + V V Q I S + D +K W +
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASDDKTVKLWNRN 497
Query: 530 --YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
L + + + +A+S DG + S K + WN G + +T +G
Sbjct: 498 GQLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLTGHS 549
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
GV F +A + +K W+
Sbjct: 550 SSVWGVA-FSPDGQTIASASSDKTVKLWN 577
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 102
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 103 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 214
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGH 300
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 43 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 93
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 94 -------------------------------------AWSSDSNLLVSASDDKT----LK 112
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 113 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 172 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 238 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 13/266 (4%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+V+ + P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL 104
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
V+ DDK +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 105 --VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
A + + + ++ DG+ + S +S +G + W+ + G +T
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDN 216
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
+ V+F LAA + +K WD L T F+ G
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGR 674
V+ S++ + + N +++ L+G
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 45 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 95
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 96 -------------------------------------AWSSDSNLLVSASDDKT----LK 114
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 115 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 174 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 240 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 286 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 77
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 78 -------------------------------------AWSSDSNLLVSASDDKT----LK 96
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 156 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 222 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 77
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 78 -------------------------------------AWSSDSNLLVSASDDKT----LK 96
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 156 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 56/230 (24%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 222 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+W++ +GH V S H E+I + D IK W D
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N ++ T+ L RL
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASMDTTIRIWDLENGELMYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 71
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 72 -------------------------------------AWSSDSNLLVSASDDKT----LK 90
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 150 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 216 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 62 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 117
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 175
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 176 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 233
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 234 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 22 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 72
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 73 -------------------------------------AWSSDSNLLVSASDDKT----LK 91
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 92 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 151 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 100 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 216
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 217 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 262
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 263 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 57 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 112
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 170
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 171 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 228
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 229 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 17 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 67
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 68 -------------------------------------AWSSDSNLLVSASDDKT----LK 86
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 87 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 146 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 95 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 211
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 212 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 258 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 61 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 116
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 174
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 175 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 232
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 21 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 71
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 72 -------------------------------------AWSSDSNLLVSASDDKT----LK 90
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 91 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 150 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 99 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 215
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 216 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 311
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 60 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 115
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 173
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 174 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 20 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 70
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 71 -------------------------------------AWSSDSNLLVSASDDKT----LK 89
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 90 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 149 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 98 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 214
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 215 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 261 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 78 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 133
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 191
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 192 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 249
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 38 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 88
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 89 -------------------------------------AWSSDSNLLVSASDDKT----LK 107
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 108 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 167 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 116 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 232
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 233 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 279 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 66 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 121
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 179
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 180 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 237
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 238 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 26 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 76
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 77 -------------------------------------AWSSDSNLLVSASDDKT----LK 95
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 96 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 155 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 104 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 220
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 221 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 267 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 316
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 29/213 (13%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L++ H GGV + +AH +V+ D+ ++VWD+ G + FEGH + V +
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAP-----------------GNWCT 545
++I++I + + D + W S D +D P G+ +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605
+ S G + S ++ L+ W+ ++ SG R + +D R R ++
Sbjct: 273 VRTVSGHGNIV----VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI-YDHERKRCIS 327
Query: 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638
A + I+ WD++N + T+ L RL
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H + + H K+ CI + D I++WD+ G YT +GH A V + +
Sbjct: 306 LSGHTDRIYSTIYDHERKR-CI-SASXDTTIRIWDLENGELXYTLQGHTALVGLL----R 359
Query: 509 ESIQFIFSTAIDGKIKAW 526
S +F+ S A DG I+ W
Sbjct: 360 LSDKFLVSAAADGSIRGW 377
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 67 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 122
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 180
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 181 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 27 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 77
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 78 -------------------------------------AWSSDSNLLVSASDDKT----LK 96
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 97 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 156 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 221
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 222 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 268 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 317
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDND 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 86/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D M+
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 109/258 (42%), Gaps = 13/258 (5%)
Query: 418 PDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
P+G L + + ++ ++ Y+ G+ + I H G++D+A++ + L V+ DD
Sbjct: 36 PNGEWLAASSADKLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSNLL--VSASDD 89
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K +K+WDV +G+ T +GH V+ C + I S + D ++ W
Sbjct: 90 KTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT 147
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
A + + + ++ DG+ + S +S +G + W+ + G +T + V+F
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
LAA + +K WD L T F+ G V+ S++ +
Sbjct: 204 SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Query: 657 KILANSDGVRLLRMLEGR 674
+ N +++ L+G
Sbjct: 264 VYIWNLQTKEIVQKLQGH 281
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LAASSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 60/232 (25%)
Query: 339 VVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP----------- 386
++TL SN V +F+PQ +++ G+ + +W+V + + L P
Sbjct: 102 CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 387 ---------------FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431
++WD AS L++D V+ + P+G + A +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWD--TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 218
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI------------VTCGDDKMI 479
+ L+ Y+ L+ + H N++ CI V+ +D ++
Sbjct: 219 LKLWDYSKGKCLKTYT--------------GHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYD 529
+W++ +GH V S H E+I I S A+ D IK W D
Sbjct: 265 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI--IASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G++D+A++ + L V+ DDK +K+WDV +G+ T +GH V+ C +
Sbjct: 64 ISGHKLGISDVAWSSDSNLL--VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFN 119
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568
I S + D ++ W A + + + ++ DG+ + S +S +G
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCR 177
Query: 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
+ W+ + G +T + V+F LAA + +K WD L T
Sbjct: 178 I--WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674
F+ G V+ S++ + + N +++ L+G
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 53/222 (23%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES 510
H V+ + F+ PN + + + DK+IK+W G+ + T GH+ + V
Sbjct: 24 GHTKAVSSVKFS-PNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDV------- 74
Query: 511 IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570
A+S+D L S K L
Sbjct: 75 -------------------------------------AWSSDSNLLVSASDDKT----LK 93
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G +T G F+ N ++ + ++ WD+ L T+ A
Sbjct: 94 IWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 152
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
P S + FN++GSL+ ++ D +I + G L +++
Sbjct: 153 D-PVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 25/240 (10%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI 392
++ ++ R N S+V ++ F+ +Q +L G N G+I +W++ + P +
Sbjct: 100 NNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN---KCTESPSNYTPL 156
Query: 393 S-AASMPLQNALLNDAAISVNRCVWGPDG-----LMLGVAFSKHIVHLYTYNPTGELRQH 446
+ SM + +++ A V+ G + + K ++HL +P ++Q
Sbjct: 157 TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ 216
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTC---GDDKMIKVWDVVAGRK--QYTFEGHEAPVY 501
L + HP + T +D I +WD+ Q +GH+ +
Sbjct: 217 LS----------VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ H++ + S+ D + W + + A GNWC ++ + LF+C +
Sbjct: 267 SLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCI-VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H + H V+D+A + N C ++ DK +++WD+ G F GH++ VYSV
Sbjct: 69 HKALTGHNHFVSDLALSQEN---CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVA 125
Query: 505 --PHHKESIQFIFSTAIDGKIKAW--LYDYLGSRVDYDAPGNWCTMMAY-----SADGTR 555
P +++ I S + +IK W L + S + + +W + + Y SA+ +
Sbjct: 126 FSPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181
Query: 556 LFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLA-AGDEFQI 612
F+ + G + L WN + I+ T F+ V + N +++A G + ++
Sbjct: 182 PFAPYFASVGWDGRLKVWN-TNFQIRYT---FKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672
WD+ N+ + D G + ++ FN + +AV T D G+KI
Sbjct: 238 LIWDILNLTY-PQREFDAGSTIN-QIAFNPKLQWVAVGT-DQGVKIF------------- 281
Query: 673 GRAMDKNRCPSEPISSKPLT 692
M +++ P I ++P+T
Sbjct: 282 -NLMTQSKAPVCTIEAEPIT 300
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 106/288 (36%), Gaps = 29/288 (10%)
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
KVWD L SV + G +L + + L+ + +R
Sbjct: 132 IKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
D +V V+ + PN IV+ DK IK+W+V G TF GH V V P+
Sbjct: 189 HGHDHNVSSVSIM----PNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN------WCTMMAYS----ADGTRL 556
++ I S + D ++ W+ + + + W +YS A G+
Sbjct: 244 QDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 557 FSCGT------SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610
G S + + W+ S G T G GV+ F + L+ D+
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL-FHSGGKFILSCADDK 360
Query: 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
++ WD N + T++A S L F+K + + D +K+
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTS--LDFHKTAPYVVTGSVDQTVKV 406
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
I++C DDK ++VWD R T HE V S+ H ++ ++ + ++D +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
+ H V + F HP + +V+ +D IKVWD G + T +GH V + H
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 509 ESIQFIFSTAIDGKIKAWLYDYLG 532
S + + S + D IK W D+ G
Sbjct: 161 -SGKLLASCSADMTIKLW--DFQG 181
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDG 521
HPN+Q + T G D M+ +WDV G + + HEA ++ V H + + +F+ + DG
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV-HFHPSNPEHLFTCSEDG 303
Query: 522 KIKAW 526
+ W
Sbjct: 304 SLWHW 308
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535
D +KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLH 1128
Query: 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
+ A+S DG L + GE + WN S+G +
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1168
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 653 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 500 VYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T D +K W + R N +S D L S
Sbjct: 709 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 767
Query: 559 C 559
C
Sbjct: 768 C 768
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 616 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 671
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 672 FSSDDSYIATCSADKKVKIW---------------------------------------- 691
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 692 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 745 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 776
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535
D +KVW+V+ GR + F H+ V S C ++ +F ST+ D K W +D L
Sbjct: 1064 DGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFDLLSPLH 1121
Query: 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
+ A+S DG L + GE + WN S+G +
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLAT--GDDNGEIRI--WNVSDGQL 1161
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + L+I AH V AF+ + I TC DK +K+WD G+ +T++ H
Sbjct: 646 TGE--KLLDIKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 500 VYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C +S + +T D +K W + R N +S D L S
Sbjct: 702 V-NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760
Query: 559 C 559
C
Sbjct: 761 C 761
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 55/214 (25%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 609 LVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV--LCCA 664
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+I + + D K+K W
Sbjct: 665 FSSDDSYIATCSADKKVKIW---------------------------------------- 684
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKFWDMDNMNMLT 624
+ + G + TY ++ + F N L A ++F +K WD++
Sbjct: 685 ------DSATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
T+ G + RF+ + LLA ++D +++
Sbjct: 738 TM--FGHTNSVNHCRFSPDDELLASCSADGTLRL 769
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV L +N GE L AH V+ + F+ IV+
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
G D ++KVWD+ GR +GH V SV
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 112/265 (42%), Gaps = 61/265 (23%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV----- 503
++ H V+D+A + N V+ D +++W++ G+ QY F GH V SV
Sbjct: 63 LEGHSAFVSDVALS--NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 504 ---------------------CPH------HKESIQFI-FSTAIDGKI---KAW-----L 527
C H H + + + FS ++D + W +
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 528 YDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYS 584
+D R+ D G N+ T + S DG+ S + K+G + L W+ ++G A+ +
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCAS--SDKDGVARL--WDLTKGEALSEMAA 236
Query: 585 GFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV--DADGG---LPASPRL 638
G + Q + NR+ + A E I+ +D++N +++ + + G +P +
Sbjct: 237 GAP-----INQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSI 291
Query: 639 RFNKEGSLLAVTTSDNGIKILANSD 663
++ +GS L +DN I++ S+
Sbjct: 292 AWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
+LR L H G V+ +A + P+ LC + G D ++ +WD+ G+K Y+ E + ++
Sbjct: 552 KLRSTLA--GHTGYVSTVAVS-PDGSLC-ASGGKDGVVLLWDLAEGKKLYSLEANSV-IH 606
Query: 502 SVC--PHHKESIQFIFSTAIDGKIKAW------LYDYL-------GSRVDYDAPGN---- 542
++C P+ ++ A + IK W + + L + D P
Sbjct: 607 ALCFSPN-----RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661
Query: 543 --WCTMMAYSADGTRLFS 558
+CT + +SADG+ LFS
Sbjct: 662 VIYCTSLNWSADGSTLFS 679
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 63/234 (26%)
Query: 407 AAISVNRCVWGPDGLMLGVAFS---KHIVH------LYTYNPTGELRQHLEI--DAHVGG 455
A +S R V G +L VAFS + IV + +N GE + + + H
Sbjct: 461 AGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
V+ + F+ Q IV+ DK +KVW++ + + T GH V +V
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV------------ 567
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
A S DG+ S G K+G L W+ +
Sbjct: 568 --------------------------------AVSPDGSLCASGG--KDGVVLL--WDLA 591
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
EG K+ YS + + F R +L A E IK WD+++ +++ + D
Sbjct: 592 EG--KKLYSLEANSVIHALCFSPNR-YWLCAATEHGIKIWDLESKSIVEDLKVD 642
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 13/200 (6%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
V L+ Y E+R + V IA ++ I+ DD I+V++ G K
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIA-----RKNWIIVGSDDFRIRVFNYNTGEKVV 91
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYS 550
FE H + S+ H + ++ S + D +K W ++ ++ ++ +A++
Sbjct: 92 DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR--FLAAGD 608
F+ G + + W+ + T + ++R + V + ++ + A D
Sbjct: 150 PKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 609 EFQIKFWDMDNMNMLTTVDA 628
+ IK WD + + T++
Sbjct: 207 DLTIKIWDYQTKSCVATLEG 226
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
TGE + LEI AH V AF+ ++ I TC DK +K+W+ + G +T++ H
Sbjct: 652 TGE--KLLEIKAHEDEVLCCAFSTDDR--FIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 500 VYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558
V + C S + +T + D +K W + R N +S D L S
Sbjct: 708 V-NCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLAS 766
Query: 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
C S +G L W+ + S ++S+ V QF
Sbjct: 767 C--SADGTLKL--WDAT--------SANERKSINVKQF 792
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535
D +KVW+++ G K+ F H+ V S C ++ +F ST+ D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
+ A+S D T L + GE + WN S G +
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLAT--GDDNGEIRI--WNVSNGEL 1167
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
L + H V F+ ++ I +CG DK ++V+ G K + HE V +C
Sbjct: 615 LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLLEIKAHEDEV--LCCA 670
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+FI + ++D K+K W
Sbjct: 671 FSTDDRFIATCSVDKKVKIW 690
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 383 AHKPFKVWDISAA----SMPLQNALLN------DAAISVNRCVWGPDGLMLGVAFSKHIV 432
A K+WD ++A S+ ++ LN D + V C W DG + VA +K+ +
Sbjct: 769 ADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA-AKNKI 827
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490
L+ + +G L + H G + I + P L +V +++W+ + K
Sbjct: 828 FLFDIHTSGLLGE-----IHTGHHSTIQYCDFSPQNHLAVVALS-QYCVELWNTDSRSKV 881
Query: 491 YTFEGHEAPVYSV 503
GH + V+ V
Sbjct: 882 ADCRGHLSWVHGV 894
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQF----IFSTAIDGKIKA 525
+V+ D M+KVWD +T +GH VY S+QF + S ++D I+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--------SLQFDGIHVVSGSLDTSIRV 303
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG--------TSKEGESHLVEWNESEG 577
W + GN ++ G + + G S +S + W+ G
Sbjct: 304 WDVE----------TGN----CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 349
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---MNMLTTVDADGGLPA 634
+T G K V +N + + D+ +K WD+ + L T+++ G
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
Query: 635 SPRLRFNKEGSLLAVTTSDNG 655
R+R + L+ S NG
Sbjct: 410 VWRIRASNT-KLVCAVGSRNG 429
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 467 QLC---IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
Q C IV+ DD +KVW V G+ T GH V+S +++I I S + D +
Sbjct: 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTL 181
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
K W + + G+ T+ R+ S ++ L W+ G
Sbjct: 182 KVWNAET--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVL 235
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
G ++ VQ+D R ++ +F +K WD + L T+
Sbjct: 236 MGHVA-AVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQG 277
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 8 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 66 PKFGTILASCSYDGKVLIW 84
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+L TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVLIW 82
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + LW ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVELWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I+ DD I+V++ G K FE H + S+ H + ++ S + D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE 127
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
++ ++ +A++ F+ G + + W+ + T + ++
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE 184
Query: 589 RSLGVVQFDTTRNR--FLAAGDEFQIKFWDMDNMNMLTTVDA 628
R + V + ++ + A D+ IK WD + + T++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K++ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEMIHDAVMDYYGKRMA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVMIW 82
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 27/184 (14%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
N+ V +DFHP + +L + G + +W ++ +V I P++
Sbjct: 11 NRSDRVKGIDFHPTEPWVLTTLYS-GRVEIWNYETQ-------VEVRSIQVTETPVR--- 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
A + R W + V + ++ YN TGE + ++ +AH + IA H
Sbjct: 60 ---AGKFIARKNW------IIVGSDDFRIRVFNYN-TGE--KVVDFEAHPDYIRSIA-VH 106
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522
P K +++ DD +K+W+ + TFEGHE V V + K+ F S +D
Sbjct: 107 PTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRT 164
Query: 523 IKAW 526
+K W
Sbjct: 165 VKVW 168
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
GVN + + + ++T DD IK+WD T EGH + V H ++ I
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPII 243
Query: 515 FSTAIDGKIKAW 526
S + DG +K W
Sbjct: 244 ISGSEDGTLKIW 255
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/162 (18%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
I+ DD I+V++ G K FE H + S+ H + ++ S + D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWE 127
Query: 530 -YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
++ ++ +A++ F+ G + + W+ + T + ++
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVWSLGQSTPNFTLTTGQE 184
Query: 589 RSLGVVQFDTTRNR--FLAAGDEFQIKFWDMDNMNMLTTVDA 628
R + V + ++ + A D+ IK WD + + T++
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+V+ D I++WD+ G EGHE V + +K I S A DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW 361
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 27/172 (15%)
Query: 459 IAFAHPNKQLC-------IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
I H LC I+T D ++VWDV G T H V H + +
Sbjct: 168 ILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRFNN 223
Query: 512 QFIFSTAIDGKIKAWLY----DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + + D I W D RV G+ + D + S G+
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRV---LVGHRAAVNVVDFDDKYI----VSASGDR 276
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMD 618
+ WN S RT +G KR + +Q+ R+R + +G + I+ WD++
Sbjct: 277 TIKVWNTSTCEFVRTLNG-HKRGIACLQY---RDRLVVSGSSDNTIRLWDIE 324
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 470 IVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+VTC D+ I VWD+ + + GH A V V K +I S + D IK W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVW 281
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+ + Y RL G+S ++ + W+ GA R G
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSS---DNTIRLWDIECGACLRVLEG- 334
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617
+ + ++FD R ++ + +IK WD+
Sbjct: 335 HEELVRCIRFDN--KRIVSGAYDGKIKVWDL 363
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHH 507
+AH ++D + K+ TC DK IK+++V + T GHE PV+ V H
Sbjct: 6 NAHNEXIHDAVXDYYGKR--XATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KESIQFIFSTAIDGKIKAW 526
+ + S + DGK+ W
Sbjct: 64 PKFGTILASCSYDGKVXIW 82
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 44/228 (19%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G++++SMD + TIL W V S + H F++ + +S+ +N
Sbjct: 161 GTHIISMDV--ENVTIL-----------WNVISGTVMQH--FELKETGGSSINAENHS-G 204
Query: 406 DAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
D ++ V+ W D ++ G + + + PTG+L H G ++ + F
Sbjct: 205 DGSLGVD-VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI------GHHGPISVLEFND 257
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
NK L ++ DD +++W G Q F GH + S + + S ++DG +
Sbjct: 258 TNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK---VISCSMDGSV 312
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLV 570
+ W T++A S DG +F+ S++G+ + V
Sbjct: 313 RLWSLKQ-------------NTLLALSIVDGVPIFAGRISQDGQKYAV 347
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 128
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 215
Query: 525 AW 526
W
Sbjct: 216 LW 217
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S+ I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW 134
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DKM+K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIM 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 168 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 139
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 194
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 195 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-------AP-VYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + +P Y
Sbjct: 190 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 247
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 248 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 300
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 422 MLGVAFS---KHIVH------LYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472
+L VAFS + IV + +N G + ++ ++H V+ + F+ + IV+
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190
Query: 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
CG DK++KVW++ + + GH + +V
Sbjct: 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--- 532
D +++WD+ G F GH V SV + I S + D IK W + LG
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVA--FSSDNRQIVSGSRDKTIKLW--NTLGVCK 162
Query: 533 SRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLVE-WNESEGAIKRTYSGFRKR 589
V ++ W + + +S + + + SCG K LV+ WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIGHTGY 217
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628
L V + + G + Q WD++ L T+D
Sbjct: 218 -LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-------AP-VYS 502
H G +N + + P+ LC + G D +WD+ G+ YT +G + +P Y
Sbjct: 213 GHTGYLNTVTVS-PDGSLC-ASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYW 270
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFS 558
+C SI+ ++GKI + D L V A CT +A+SADG LF+
Sbjct: 271 LCAATGPSIKIW---DLEGKI---IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 194 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 167
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 206
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 207 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 238
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I WDM NM+ +L T+ ADG + A P L R KE + A
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 106
Query: 654 NG 655
+G
Sbjct: 107 SG 108
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
H G V ++ A P+ +L V+ D K+WDV G + TF GHE+ + ++C
Sbjct: 183 HTGDVMSLSLA-PDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 53/238 (22%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V C + P G + +I +Y G +R E+ H G ++ F N+
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--- 156
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
IVT D +WD+ G++ TF GH V S+ S A D
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL------------SLAPD--------- 195
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
TRLF G ++ W+ EG ++T++G +
Sbjct: 196 ------------------------TRLFVSGAC---DASAKLWDVREGMCRQTFTG-HES 227
Query: 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
+ + F N F D+ + +D+ L T D + + F+K G LL
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
G L S V ++ G++ ++ H G V +A+AHP + +C D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 480 KVWDVVAG--RKQYTFEGHEAPVYSVC--PH 506
+W G K + GH++ V SVC PH
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 22/142 (15%)
Query: 410 SVNRCVWGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA----- 462
SVN W P GL+L S + L TY G+ +AH G N +++A
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164
Query: 463 -----HPNKQ-----LCIVTCGDDKMIKVW---DVVAGRKQYTFEGHEAPVYSV--CPHH 507
HP+ Q + G D +IK+W + +++ E H V V P
Sbjct: 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224
Query: 508 KESIQFIFSTAIDGKIKAWLYD 529
I S + DG++ W D
Sbjct: 225 GLPTSTIASCSQDGRVFIWTCD 246
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ TC D+ +K++DV G + GHE PV+ V H + S + D K+ W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V I +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGIDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVW 482
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
DK +++WDV G F GH++ V SV K S I S + D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW 134
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 465 NKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524
+ + I++ G+DK +K W++ + + F GH + + ++ ++ I S DG+I
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL--IASAGKDGEIX 221
Query: 525 AW 526
W
Sbjct: 222 LW 223
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
W D + + + H VH+Y + ++ H E+ H G V + +A + + IVTCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNR--IVTCGT 72
Query: 476 DKMIKVW 482
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I WDM NM+ +L T+ ADG + A P L
Sbjct: 47 NKLQAGGYGFVISDWDMPNMDGLELLKTIRADGAMSALPVL 87
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 341 RTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
RTL G+ V+ MD+ ++ I+ + G + +W+ F A +MP
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQD-GKVIVWD----------SFTTNKEHAVTMP- 105
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY--TYNPTGELR-QHLEIDAHVGGV 456
V C + P G + + +Y T++ + + + H +
Sbjct: 106 --------CTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL 157
Query: 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFS 516
+ +F + + Q I+T D +WDV +G+ +F GH A V + E+ S
Sbjct: 158 SACSFTNSDMQ--ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215
Query: 517 TAIDGKIKAW 526
D K W
Sbjct: 216 GGCDKKAMVW 225
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
V+ G DK VWD+ +G+ FE HE+ V SV
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W+M NM+ +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH------------VGGVNDIAFAHPN 465
P G LG + +H NP + + H + VN IAF HP
Sbjct: 228 PTGFALGSIEGRVAIHYI--NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF-HPV 284
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID 520
+ T G D WD A K T E + P+ + C +H +I F ++++ D
Sbjct: 285 HGT-LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI-FAYASSYD 337
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEA 90
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 188 DRG--RNVLSASLDGTIRLW 205
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEA 90
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 42 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 88
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 45 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 91
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 448 EID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EID AHV + + F + L ++ D +K+W V G T GH A V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL--ISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 507 HKESIQFIFSTAIDGKIKAW 526
+ + + S ++DG I+ W
Sbjct: 191 DRG--RNVLSASLDGTIRLW 208
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 86
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.52, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISXWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEA 89
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEA 90
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 125/328 (38%), Gaps = 56/328 (17%)
Query: 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404
Q + S+DF P + ++ G++ ++++E PFK +
Sbjct: 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKF-----------KSTF 186
Query: 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY---NPTGELRQ-HLEIDAHVGGVNDIA 460
+ V+ + PDG + + LY TG L+ AH G V +
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI----QFIFS 516
++ + I + DK IK+W+V + + T PV + + I Q + S
Sbjct: 247 WSPDGTK--IASASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVS 299
Query: 517 TAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574
+ +G I ++ LGS +V Y T ++ SADG LFS + E H+ W+
Sbjct: 300 ISANGFIN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDI 353
Query: 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634
S G R + + T + + GD F + WD + L V A G
Sbjct: 354 STGISNRVFPDVHATMI-------TGIKTTSKGDLFTVS-WD----DHLKVVPAGGSGVD 401
Query: 635 SPRLRFNKEGS--LLAVTTSDNGIKILA 660
S + NK S L ++D I + A
Sbjct: 402 SSKAVANKLSSQPLGLAVSADGDIAVAA 429
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 40 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEA 86
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W+M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEA 90
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421
+LV ++ G + LWE+ +E L F ++ L ++ +D G +
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSD----------GTQAV 155
Query: 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481
G FS V ++ + L+ + +AH VN +A A P K ++CG+D I +
Sbjct: 156 SGGKDFS---VKVWDLSQKAVLKSY---NAHSSEVNCVA-ACPGKDTIFLSCGEDGRILL 208
Query: 482 WDV 484
WD
Sbjct: 209 WDT 211
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 471 VTCGDDKMIKVWDVV--AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW-- 526
V+ G D +KVWD+ A K Y E + CP K++I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+R+D+ A T + + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 100/268 (37%), Gaps = 49/268 (18%)
Query: 389 VWDISAASMPLQNALL-NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
VW+ + S+ +AL D + V W DG L V +V +Y +LR
Sbjct: 117 VWNADSGSV---SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 448 EIDAHVGGV------------------NDIAFAHP--------NKQLC----------IV 471
A VG + +D+ A+ + ++C +
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLA 233
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV--CPHHKESIQFIFSTAIDGKIKAWLYD 529
+ G+D ++++WD + ++T H A V +V CP + T +D +I W
Sbjct: 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFW-NA 291
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS--GFR 587
G+RV+ G+ T + +S + S T +++L W+ S + +
Sbjct: 292 ATGARVNTVDAGSQVTSLIWSPHSKEIMS--THGFPDNNLSIWSYSSSGLTKQVDIPAHD 349
Query: 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
R L R AA DE +KFW
Sbjct: 350 TRVLYSALSPDGRILSTAASDE-NLKFW 376
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W+M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
Query: 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503
H ++ H+ V+D F ++C +D +IK+ D G T+EGHE+ VY +
Sbjct: 183 HNDVVRHLAVVDDGHF---------ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCI 231
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL----RFNKEGSLLAVTTSD 653
N+ A G F I W +MD + +L T+ ADG + A P L R KE + A
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGA 102
Query: 654 NG 655
+G
Sbjct: 103 SG 104
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGEL 443
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GHEAPV 500
+L + H V +A +P + T D+ +K+WD+ V G+ + + H PV
Sbjct: 243 LWNLRM--HKKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 501 YSVC 504
+ C
Sbjct: 300 NAAC 303
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 42/188 (22%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGE- 442
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 184 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242
Query: 443 ---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GH 496
LR H + HV +P + T D+ +K+WD+ V G+ + + H
Sbjct: 243 LWNLRMHKKKVTHVA-------LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295
Query: 497 EAPVYSVC 504
PV + C
Sbjct: 296 RHPVNAAC 303
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 42/188 (22%)
Query: 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRER---------------LAHKPFKVWDISAA 395
S+ +HP + + VG+ GDI LW G +++ L P A+
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGL-----MLGVAFSKHIV-------HLYTYNPTGE- 442
SM L D ++ R D + L V+ S +V ++ N G+
Sbjct: 185 SME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 243
Query: 443 ---LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV--VAGRKQYTFE-GH 496
LR H + HV +P + T D+ +K+WD+ V G+ + + H
Sbjct: 244 LWNLRMHKKKVTHVA-------LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 296
Query: 497 EAPVYSVC 504
PV + C
Sbjct: 297 RHPVNAAC 304
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRLRFNKEG 644
N+ A G F I W M NM+ +L T+ ADG + A P L E
Sbjct: 44 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEA 90
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%)
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP + L G + L G R+ ++W S ++ L +V +
Sbjct: 14 HPDSRCWFLAWNPAGTL-LASCGGDRRI-----RIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W P G L A ++ N + ++ H V +A+A P+ L + TC
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKN-QDDFECVTTLEGHENEVKSVAWA-PSGNL-LATCS 124
Query: 475 DDKMIKVWDV 484
DK + VW+V
Sbjct: 125 RDKSVWVWEV 134
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
K VW++ ++LN V VW P +L A V LY +
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR-EEEDDWV 185
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482
++ H V +AF ++L +C DD+ +++W
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRL--ASCSDDRTVRIW 221
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWKMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAPVYSV 503
+ ++ H V +A+ HP Q +++ G D +I VWDV G T + H +YSV
Sbjct: 125 ITLEGHTKRVGIVAW-HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641
T G KR V T +N L+AG + I WD+ + T+ D + ++
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 642 KEGSLLAVTTSDNGIKILANSDG 664
++G+L+ + D ++++ G
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKG 208
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 167 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 259
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 171 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 263
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY------- 491
P+GE + L + H +++ +PN +++ DD I +WD+ A K++
Sbjct: 169 PSGECQPDLRLRGHQKEGYGLSW-NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIW 261
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFWDMDNMN---MLTTVDADGGLPASPRL 638
N+ A G F I W M NM+ +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWRMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPD 419
+LV ++ G + LWE+ E L F ++ + +++ ++ S + V G
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYE--------HDDIVSTVSVLSSGTQAVSGSK 147
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
+ + V V L +Y AH V +A A P+K ++C +D I
Sbjct: 148 DICIKVWDLAQQVVLSSYR------------AHAAQVTCVA-ASPHKDSVFLSCSEDNRI 194
Query: 480 KVWDVVAGRKQYTFEGHEAPVY---SVCPHHKESIQFIF 515
+WD + G AP Y S+ H ++S F+F
Sbjct: 195 LLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQSEVFVF 232
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 471 VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH-HKESIQFIFSTAIDGKIKAW--L 527
V+ D IKVWD+ ++ H A V V HK+S+ S + D +I W
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV--FLSCSEDNRILLWDTR 200
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
S++ APG T +A+ + +F G
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 601 NRFLAAGDEFQIKFW---DMDNMNMLTTVDADGGLPASPRL 638
N+ A G F I W +MD + +L T+ ADG + A P L
Sbjct: 43 NKLQAGGYGFVISDWMMPNMDGLELLKTIRADGAMSALPVL 83
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 44/259 (16%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+ T +D++I++WD+ + +GHE +YS+ + S + S + D ++ W
Sbjct: 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLVSGSGDRTVRIWDLR 195
Query: 527 -------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579
L G +PG+ + A S D R S+ G LVE +SE
Sbjct: 196 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD--RAVRVWDSETG--FLVERLDSE--- 248
Query: 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639
+ +G + VV F ++ + +K W++ N N +D P S
Sbjct: 249 NESGTGHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQNANN----KSDSKTPNSGTCE 303
Query: 640 FNKEGS---LLAVTTSDNGIKILANSD--GVRL--------LRMLEGRAMDKNRCPSEPI 686
G +L+V T+ N IL+ S GV L ML+G +N S +
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH---RNSVISVAV 360
Query: 687 SSKPLTINALGPASNVSAA 705
++ ++LGP NV A
Sbjct: 361 ANG----SSLGPEYNVFAT 375
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 317 EVSFAGVAHTPN-VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW- 374
EV +A T + +Y Q D+ VR + V H + +T+L VGT G +++W
Sbjct: 22 EVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWS 81
Query: 375 -EVGSRERLAHKPFKVWDISAASMPLQN 401
+ G+R+ A + K+ D + A + N
Sbjct: 82 AQAGARKVYAVEATKMADHARALVKANN 109
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWD 101
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWE 375
V S+++HP T + VG+ GDI LW+
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>pdb|3GBS|A Chain A, Crystal Structure Of Aspergillus Oryzae Cutinase
Length = 197
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 531 LGSRVDYDAPGNWC---TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKR 581
+G R D P N T A A+ LF SK ++ +V S+G AIKR
Sbjct: 63 VGPRYTADLPSNALPEGTSQAAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKR 122
Query: 582 TYSGFRKRSLGVVQFDTTRN 601
+ + + GVV F TRN
Sbjct: 123 LSADVQDKIKGVVLFGYTRN 142
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 586 FRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
LGVV D + +AA I+ WD++N + ++DA G + L F+ +
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPD 133
Query: 644 GSLLAVTTSDNGIKILANSDG 664
LA T + I G
Sbjct: 134 SQYLATGTHVGKVNIFGVESG 154
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ------- 490
+P+GE L + H +++ +PN +++ DD I +WD+ A K+
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSW-NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK 220
Query: 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
F GH A V V H F S A D K+ W
Sbjct: 221 TIFTGHTAVVEDVSWHLLHESLF-GSVADDQKLMIW 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,346,104
Number of Sequences: 62578
Number of extensions: 1133852
Number of successful extensions: 3171
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2814
Number of HSP's gapped (non-prelim): 289
length of query: 915
length of database: 14,973,337
effective HSP length: 108
effective length of query: 807
effective length of database: 8,214,913
effective search space: 6629434791
effective search space used: 6629434791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)