Query 002494
Match_columns 915
No_of_seqs 899 out of 4585
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 15:49:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002494.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1215-1219//hhsearch_pdb/002494hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 1.0 1 1 474.5 57.5 498 314-872 20-569 (611)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 461.8 59.9 485 311-867 56-577 (577)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 460.2 56.1 499 310-868 613-1247(1249)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 455.9 51.2 475 343-874 612-1162(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 445.3 53.6 511 295-869 41-610 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 443.2 56.3 495 310-870 14-539 (577)
7 1pgu_A Actin interacting prote 1.0 1 1 412.3 52.0 496 313-870 19-614 (615)
8 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 408.4 48.0 518 310-875 15-788 (902)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 397.4 54.8 467 339-873 10-667 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 395.0 49.3 467 345-873 17-575 (615)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=474.46 Aligned_cols=498 Identities=13% Similarity=0.111 Sum_probs=339.6
Q ss_pred CCCCEEECCCCCCCEEEEC------CCCCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCC
Q ss_conf 9750464288987435525------887642789850-799779999917999399999477909999869984002466
Q 002494 314 QSDEVSFAGVAHTPNVYSQ------DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (915)
Q Consensus 314 ~~~~~~~s~~g~~~~~~~~------d~~~~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~ 386 (915)
....++|+|+|+.++.... +...+....++. |...|++++|||+|+ ++++|+.||+|++||+.+++....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-- 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-- 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE--
T ss_pred CEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEE--
T ss_conf 23697667999979967999799945787242737658998659999999996-899994899789948989841566--
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCEEEEEEEECCCCCEEEEEEE
Q ss_conf 0565326676321010147775484999995899989999889----859999904898323347753345776689991
Q 002494 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (915)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s 462 (915)
..+..|.+.|.+++|+|+++.|++++.+ +.|++|+ .+.... .+.+|...|.+++|+
T Consensus 97 ---------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 97 ---------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ---------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEEC
T ss_pred ---------------EEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCCCC---EECCCCCCCEEEEEC
T ss_conf ---------------762255784489998999997999989977366999963--899763---254788983699988
Q ss_pred CCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEEC----
Q ss_conf 6999079999918991999996799067896188998789972037994199999679949999658998236850----
Q 002494 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---- 538 (915)
Q Consensus 463 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 538 (915)
|++.. .+++++.|+.+++||..++++...+.+|...|.+++|+|+ ++++++++.|+.|++||+.++.....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCE-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCC
T ss_conf 99982-9999928980999979997576652002571699999799--99899998999199988999828665136643
Q ss_pred ---CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCC--CEEEEEECCCCCEEEEEECCCCEE
Q ss_conf ---899917999997999989999633799833999978999268995277787--447999859999999996899199
Q 002494 539 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIK 613 (915)
Q Consensus 539 ---~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~dg~i~ 613 (915)
.|...|.+++|+|+|+++++++. |+.|++||+.+++.+..+..+... ....+.| ++..+++++.|+.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEE
T ss_conf 23566787899999799999999908----980999968887013440478876640689997--388799995899689
Q ss_pred EEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9969999147997179999983549995999999999589959999869985204220-278776102679988789883
Q 002494 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML-EGRAMDKNRCPSEPISSKPLT 692 (915)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~ 692 (915)
+|+...++....+.+|.. .|++++|+|++++|++++.|+.|++|++.++ +....+ .+|...+..+.+. ++
T Consensus 308 ~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-~~~~~~~~~h~~~v~~~~~s------~~ 378 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFPDVHATMITGIKTT------SK 378 (611)
T ss_dssp EEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSSCSCSSCEEEEEEC------TT
T ss_pred EEECCCCCCCEEECCCCC--CEEEEEEECCCCEEEEEECCCCEEEEECCCC-CEEEECCCCCCCEEEEEEEC------CC
T ss_conf 996889974469837888--8899999189998999958984999978879-25632166776507899987------89
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC--CCCEECCCCCEEECCCCCCEEEEECCCCCCCCCEEEEE
Q ss_conf 013215676432247964588999997323-----33467--78411048860210378944676248989966335864
Q 002494 693 INALGPASNVSAAIAPTLERPDRGPPAVSI-----SSLGT--IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~--~~~~~s~dg~~la~~~~~~i~iw~~~~~~~~~~~~~~~ 765 (915)
+.++ +.+ .+.++.+|+........ ..+.. ....+++|++.++++.++.+++|+.. . .....
T Consensus 379 ~~l~-s~s-----~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~-----~-~~~~~ 446 (611)
T 1nr0_A 379 GDLF-TVS-----WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-----K-LTEVP 446 (611)
T ss_dssp SCEE-EEE-----TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-----E-EEEEE
T ss_pred CCEE-EEE-----CCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECC-----C-EEEEE
T ss_conf 9699-998-----4896689546885435652120014899707998079969999967639998489-----4-34640
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-----------------CCCCCCCCCCCC----CCEEECCC
Q ss_conf 178668885699999318852878312551587652555-----------------679999711100----32231499
Q 002494 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT-----------------ERNPSGKATANV----APQLWQPP 824 (915)
Q Consensus 766 ~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~-----------------~~s~dg~~~~~~----~i~l~~~~ 824 (915)
|...+.+++|+|||++|++++.|++|++|++... .|+|||+.++++ ++++|+..
T Consensus 447 -----~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 447 -----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp -----CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred -----CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC
T ss_conf -----688954999928998999968997399999459922241015778860799998999989999489989998857
Q ss_pred C-CCCEEC-CCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECCCCC
Q ss_conf 9-873001-4899998887412999712997599851-9925996615899
Q 002494 825 S-GTLMTN-DINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (915)
Q Consensus 825 ~-~~~~~~-~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t~k 872 (915)
+ ++.... ...+ | ...|++++|||||++||+++ |++|++|++.+++
T Consensus 522 ~~~~~~~~~~~~~--H-~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 522 NNFELAHTNSWTF--H-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp GTTEESCCCCCCC--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCCEEEEEEEEE--C-CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 7872232102640--4-6642589989989979999799729999788755
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=461.77 Aligned_cols=485 Identities=21% Similarity=0.331 Sum_probs=229.4
Q ss_pred CCCCCCCEEECCCCCCCEEEECCC------CCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEC
Q ss_conf 348975046428898743552588------7642789850-799779999917999399999477909999869984002
Q 002494 311 RTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (915)
Q Consensus 311 ~~~~~~~~~~s~~g~~~~~~~~d~------~~~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~ 383 (915)
+...+.+++|+|+|+.++..+.|. .+++.+..+. |...|.+++|+|+++ ++++++.|+.+++|+........
T Consensus 56 h~~~V~~l~fspdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~~~~ 134 (577)
T 2ymu_A 56 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQT 134 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCCEEECCCCCCEEEE
T ss_conf 98998999998999999999698979999899978999978999889999989999-89998079833520235520011
Q ss_pred C-------------------------CCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEEC
Q ss_conf 4-------------------------660565326676321010147775484999995899989999889859999904
Q 002494 384 H-------------------------KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 384 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~ 438 (915)
. ....+|..... .......+...|.++.|+|++.++++++.|+.|++|+..
T Consensus 135 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~ 210 (577)
T 2ymu_A 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 210 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred CCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEE----EEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 0477774355542037763200255531000000000----000026877635665416997789998599989999499
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 89832334775334577668999169990799999189919999967990678961889987899720379941999996
Q 002494 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~ 518 (915)
. +.+. .+.+|...|.+++|+|++. ++++++.|+.+++|+. +++.+..+.+|...|.+++|+|++ ..+++++
T Consensus 211 ~-~~~~---~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~--~~l~~~~ 281 (577)
T 2ymu_A 211 G-QLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG--QTIASAS 281 (577)
T ss_dssp S-CEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTS--SEEEEEE
T ss_pred C-CEEE---EEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCC--CEEEEEE
T ss_conf 9-6899---9946889889999979999--9999918998999959-997999980688987999996899--9999995
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECC
Q ss_conf 79949999658998236850899917999997999989999633799833999978999268995277787447999859
Q 002494 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (915)
Q Consensus 519 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 598 (915)
.|+.+++|+.. ......+..|...+.+++|+|+++.+++++. ++.+++||... ..+..+.+|.. .+.+++|+|
T Consensus 282 ~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~----d~~i~~w~~~~-~~~~~~~~~~~-~v~~~~~s~ 354 (577)
T 2ymu_A 282 DDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNRNG-QHLQTLTGHSS-SVWGVAFSP 354 (577)
T ss_dssp TTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS-CEEEEECCCSS-CEEEEEECT
T ss_pred CCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEECCC-CEEEEEECCCC-CEEEEEECC
T ss_conf 99979999489-9589997068897699999999999999969----99599996999-72578747889-779999989
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCC
Q ss_conf 99999999689919999699991479971799999835499959999999995899599998699852042202787761
Q 002494 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDK 678 (915)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 678 (915)
++.++++++.|+.+++|+. +++.+..+..|.. .|++++|+|+++++++++.|+.|++|+. ++ +.+..+.+|...+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~-~~~~~~~~~~~~v 429 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNR-NG-QLLQTLTGHSSSV 429 (577)
T ss_dssp TSSEEEEEETTSEEEEEET-TCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSEEEEECT-TC-CEEEEEECCSSCE
T ss_pred CCCEEEEEECCCEEEEECC-CCCEEEEECCCCC--CEEEEEECCCCCEEEEEECCCEEEEEEC-CC-CEEEEECCCCCCE
T ss_conf 9999999969998999908-9978998527889--7489999899999999949998999969-99-7898962889975
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCEECCCCCEEECCCC-CCEEEEECCC
Q ss_conf 0267998878988301321567643224796458899999732-333467--78411048860210378-9446762489
Q 002494 679 NRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS-ISSLGT--IDGSRLVDVKPRVAEDV-DKIKSWRIPD 754 (915)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~--~~~~~s~dg~~la~~~~-~~i~iw~~~~ 754 (915)
..+.+. |+++.+++++.+ .++.+|+....... ...... ..+.|+||++++++++. ++|++|+..
T Consensus 430 ~~~~~s------~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~- 497 (577)
T 2ymu_A 430 WGVAFS------PDDQTIASASDD-----KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 497 (577)
T ss_dssp EEEEEC------TTSSEEEEEETT-----SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-
T ss_pred EEEEEC------CCCCEEEEECCC-----CEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-
T ss_conf 799998------999999999399-----98999979998899972789977899996999999999198979999399-
Q ss_pred CCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECCCC
Q ss_conf 89966335864178668885699999318852878312551587652555679999711100322314999873001489
Q 002494 755 ISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 834 (915)
Q Consensus 755 ~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~~s~dg~~~~~~~i~l~~~~~~~~~~~~~~ 834 (915)
+..+. .+.+ |...|++++|+||+++|++++.|+.|+ +|+. +++.+.. +.
T Consensus 498 ---~~~~~--~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~----------------------lwd~-~~~~~~~-~~ 546 (577)
T 2ymu_A 498 ---GQLLQ--TLTG--HSSSVRGVAFSPDGQTIASASDDKTVK----------------------LWNR-NGQLLQT-LT 546 (577)
T ss_dssp ---SCEEE--EEEC--CSSCEEEEEECTTSSCEEEEETTSEEE----------------------EECT-TSCEEEE-EE
T ss_pred ---CCEEE--EEEC--CCCCEEEEEECCCCCEEEEEECCCEEE----------------------EEEC-CCCEEEE-EC
T ss_conf ---97899--9867--999989999918999999998969999----------------------9969-9978989-71
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEE
Q ss_conf 9998887412999712997599851-99259966
Q 002494 835 ESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (915)
Q Consensus 835 ~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~ 867 (915)
+ | .+.|++++|+|||++|++++ |++|++||
T Consensus 547 ~--h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 G--H-SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp C--C-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C--C-CCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 8--8-88878999968999999990899999969
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=460.20 Aligned_cols=499 Identities=14% Similarity=0.201 Sum_probs=236.1
Q ss_pred CCCCCCCCEEECCCCCCCEEEECCC-------CCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCE
Q ss_conf 2348975046428898743552588-------7642789850-7997799999179993999994779099998699840
Q 002494 310 IRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (915)
Q Consensus 310 ~~~~~~~~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~ 381 (915)
.+.+.+.+++|+++|+.+++.+.|. .+++.+..+. |.+.|.+++|+|+++ ++++|+.||.|++||+.+++.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKL 691 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCE
T ss_conf 6666489999879999899994889499999899978887606777789999926999-899981899599987799936
Q ss_pred ECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEE
Q ss_conf 0246605653266763210101477754849999958--99989999889859999904898323347753345776689
Q 002494 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (915)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp--d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i 459 (915)
+.. +.+|...|.+++|+| ++..+++++.|+.|++||+.++.... .+.+|...|.++
T Consensus 692 ~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 692 VHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHC 749 (1249)
T ss_dssp EEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEE
T ss_pred EEE-------------------ECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHH---EECCCCCCEEEE
T ss_conf 899-------------------9589973799998408996599998089709999899963422---012777978899
Q ss_pred EEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECC-------------CCCCEEEEEEECCCCCCEEEEEECCCEEEEE
Q ss_conf 991699907999991899199999679906789618-------------8998789972037994199999679949999
Q 002494 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (915)
Q Consensus 460 ~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iw 526 (915)
+|+|++. ++++++.|+.|++||+.++.....+.. ....+.+++|++++ ..+++++ ++.+.+|
T Consensus 750 ~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~~ 824 (1249)
T 3sfz_A 750 RFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLLF 824 (1249)
T ss_dssp EECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEEE
T ss_pred EEECCCC--EEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCC--CEEEEEC-CCCEEEE
T ss_conf 9925999--899997898599996888865530202321024677644565017999997899--8899975-8959999
Q ss_pred ECCCCCCEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEE
Q ss_conf 658998236850-8999179999979999899996337998339999789992689952777874479998599999999
Q 002494 527 LYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (915)
Q Consensus 527 d~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 605 (915)
|+.+........ .+...+.+++|+|+++.+++++. ++.+++||..++..+..+.+|.. .+.+++|+|+++++++
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred EECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEC----CCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEE
T ss_conf 956897235774787776079998278888999947----98699998678956532278766-5689999899998999
Q ss_pred EECCCCEEEE----------------------------------------------------------------------
Q ss_conf 9689919999----------------------------------------------------------------------
Q 002494 606 AGDEFQIKFW---------------------------------------------------------------------- 615 (915)
Q Consensus 606 ~~~dg~i~iw---------------------------------------------------------------------- 615 (915)
++.||.+++|
T Consensus 900 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g 979 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFG 979 (1249)
T ss_dssp EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEE
T ss_pred EECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 95897289887466520102113310368975998689981377624898447650897256727899995899779998
Q ss_pred ---------ECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf ---------69999147997179999983549995999999999589959999869985204220278776102679988
Q 002494 616 ---------DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (915)
Q Consensus 616 ---------d~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 686 (915)
++.+++....+..|.. .|++++|+|+++++++++.||.|++|++.++ +.. .+.+|...+..+.+.
T Consensus 980 ~~~g~i~i~d~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~-~~~-~~~~~~~~v~~~~~~-- 1053 (1249)
T 3sfz_A 980 DEDGAIKIIELPNNRVFSSGVGHKK--AVRHIQFTADGKTLISSSEDSVIQVWNWQTG-DYV-FLQAHQETVKDFRLL-- 1053 (1249)
T ss_dssp ETTSCCEEEETTTTSCEEECCCCSS--CCCCEEECSSSSCEEEECSSSBEEEEETTTT-EEE-CCBCCSSCEEEEEEC--
T ss_pred CCCCCEEEEECCCCCEEEECCCCCC--CEEEEEECCCCCEEEEECCCCEEEEEECCCC-CEE-EEECCCCCEEEEEEC--
T ss_conf 6999889997578723443036777--1689999899998999869987999987999-668-985278738999990--
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC--CCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCE
Q ss_conf 78988301321567643224796458899999732--333467--78411048860210378-94467624898996633
Q 002494 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS--ISSLGT--IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQI 761 (915)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~--~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~ 761 (915)
+++.++..+. ++++.+|+....... .....+ ..+.++||++++++++. ++|++|++... ...
T Consensus 1054 ----~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~---~~~ 1120 (1249)
T 3sfz_A 1054 ----QDSRLLSWSF------DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL---SPL 1120 (1249)
T ss_dssp ----SSSEEEEEES------SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS---SCS
T ss_pred ----CCCCEEEEEC------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC---CEE
T ss_conf ----8995899978------896899888988655887466884899999899998999849994899878985---001
Q ss_pred EEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-------------------------CCCCCCCCCCC
Q ss_conf 58641786688856999993188528783125515876525556-------------------------79999711100
Q 002494 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE-------------------------RNPSGKATANV 816 (915)
Q Consensus 762 ~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~-------------------------~s~dg~~~~~~ 816 (915)
. .+.+ |...|++++|+||+++|++++.||.|++|++..+. |+|||+.++++
T Consensus 1121 ~--~l~~--h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1121 H--ELKG--HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp B--CCCC--CSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred E--EECC--CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEC
T ss_conf 2--5506--87767999997999989998289979999889994578851444442102567428999997899989977
Q ss_pred --CCEEECCCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEEC
Q ss_conf --3223149998730014899998887412999712997599851-992599661
Q 002494 817 --APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (915)
Q Consensus 817 --~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l 868 (915)
.+++|++.++..+.. +.+ | ...|++++|||||++|++++ ||.|.+|++
T Consensus 1197 ~g~v~vwd~~~g~~~~~-~~~--~-~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 GGYLKWWNVATGDSSQT-FYT--N-GTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SSSEEEBCSSSCBCCCC-CCC--S-SCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCEEEEEECCCCCEEEE-EEC--C-CCCCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf 98599989888950046-400--4-775327999789877999668817999764
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=455.94 Aligned_cols=475 Identities=14% Similarity=0.231 Sum_probs=383.2
Q ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 50799779999917999399999477909999869984002466056532667632101014777548499999589998
Q 002494 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (915)
Q Consensus 343 l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~ 422 (915)
..|.+.|++++|+|+++ ++++|+.||.|++||+.+++.+.. +.+|...|.+++|+|++++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred ECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCE
T ss_conf 16666489999879999-899994889499999899978887-------------------6067777899999269998
Q ss_pred EEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEE
Q ss_conf 99998898599999048983233477533457766899916999079999918991999996799067896188998789
Q 002494 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (915)
Q Consensus 423 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 502 (915)
+++++.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++++.|+.|++||+.++++...+.+|...|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEECCCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEE
T ss_conf 9998189959998779993689---9958997379999840899659999808970999989996342201277797889
Q ss_pred EEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECC-------------CCCCEEEEEECCCCCEEEEEEECCCCCCEE
Q ss_conf 9720379941999996799499996589982368508-------------999179999979999899996337998339
Q 002494 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------------PGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (915)
Q Consensus 503 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i 569 (915)
++|+|++ .++++++.||.|++||+.+......+.. ....+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEECCC--CEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-----CCCE
T ss_conf 9992599--98999978985999968888655302023210246776445650179999978998899975-----8959
Q ss_pred EEEECCCCEEEEEEC-CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEE
Q ss_conf 999789992689952-7778744799985999999999689919999699991479971799999835499959999999
Q 002494 570 VEWNESEGAIKRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (915)
Q Consensus 570 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 648 (915)
.+||..++.....+. +|.. .+.+++|+|++.++++++.||.|++|++.++..+..+.+|.. .|++++|+|++.+++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred EEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCC--CEEEEEECCCCCEEE
T ss_conf 99995689723577478777-607999827888899994798699998678956532278766--568999989999899
Q ss_pred EEECCCCEEEEECCCCCEE----------------------------EEECCCCC--------CCCCCCCCCCCCCCCCC
Q ss_conf 9958995999986998520----------------------------42202787--------76102679988789883
Q 002494 649 VTTSDNGIKILANSDGVRL----------------------------LRMLEGRA--------MDKNRCPSEPISSKPLT 692 (915)
Q Consensus 649 s~~~dg~i~iwd~~~~~~~----------------------------~~~~~~~~--------~~v~~~~~~~~~~~~~~ 692 (915)
+++.||.|++|++.+.... .....+.. ..+..+.+ +|+
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------sp~ 972 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL------SPH 972 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE------CTT
T ss_pred EEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEE------CCC
T ss_conf 99589728988746652010211331036897599868998137762489844765089725672789999------589
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C-CCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCEEEEECC
Q ss_conf 0132156764322479645889999973233346---7-78411048860210378-94467624898996633586417
Q 002494 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLG---T-IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767 (915)
Q Consensus 693 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~-~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~ 767 (915)
+..+++++.++ .+.+|+............ . ..+.|++|++++++++. ++|++|++.. + ... ...
T Consensus 973 g~~l~~g~~~g-----~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~---~-~~~--~~~ 1041 (1249)
T 3sfz_A 973 LEYVAFGDEDG-----AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT---G-DYV--FLQ 1041 (1249)
T ss_dssp SSEEEEEETTS-----CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT---T-EEE--CCB
T ss_pred CCEEEEECCCC-----CEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC---C-CEE--EEE
T ss_conf 97799986999-----889997578723443036777168999989999899986998799998799---9-668--985
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC----------------CCCCCCCCCCC----CCEEECCCCCC
Q ss_conf 86688856999993188528783125515876525556----------------79999711100----32231499987
Q 002494 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE----------------RNPSGKATANV----APQLWQPPSGT 827 (915)
Q Consensus 768 ~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~----------------~s~dg~~~~~~----~i~l~~~~~~~ 827 (915)
+ |...|.+++|+|++. +++++.|+.+++|++..+. ++|||+.++++ ++++|+..++.
T Consensus 1042 ~--~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1042 A--HQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp C--CSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred C--CCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 2--787389999908995-8999788968998889886558874668848999998999989998499948998789850
Q ss_pred CEECCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECCCCCCC
Q ss_conf 30014899998887412999712997599851-992599661589999
Q 002494 828 LMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKPP 874 (915)
Q Consensus 828 ~~~~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t~k~~ 874 (915)
.+.. +.+ | ...|++++|||||++|++++ ||.|++||+.+++..
T Consensus 1119 ~~~~-l~~--h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1119 PLHE-LKG--H-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp CSBC-CCC--C-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred EEEE-ECC--C-CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
T ss_conf 0125-506--8-776799999799998999828997999988999457
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=445.33 Aligned_cols=511 Identities=13% Similarity=0.123 Sum_probs=383.5
Q ss_pred CEEECCCCCCHHH-HCCCCCCCCCEEECCCCCCCEEEECCCC---------CCCEEEEEC-CCCCEEEEEECCCCCEEEE
Q ss_conf 0111279930011-1023489750464288987435525887---------642789850-7997799999179993999
Q 002494 295 GMDYQSADSDHLM-KRIRTGQSDEVSFAGVAHTPNVYSQDDL---------TKTVVRTLN-QGSNVMSMDFHPQQQTILL 363 (915)
Q Consensus 295 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~~~~~~~d~~---------~~~~~~~l~-h~~~V~~i~fspd~~~ll~ 363 (915)
..+|...+..... -..+.+.+..++|+|+|++++..+.|.. .......+. |.+.|.+++|+|+++. ++
T Consensus 41 v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~-l~ 119 (611)
T 1nr0_A 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR-IA 119 (611)
T ss_dssp EEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE-EE
T ss_pred EEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCE-EE
T ss_conf 99945787242737658998659999999996899994899789948989841566762255784489998999997-99
Q ss_pred EEECC----CCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEEEC
Q ss_conf 99477----90999986998400246605653266763210101477754849999958999-89999889859999904
Q 002494 364 VGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYN 438 (915)
Q Consensus 364 ~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~-~l~s~~~dg~i~iwd~~ 438 (915)
+++.+ +.|++||. +..... +.+|...|.+++|+|++. .|++++.|+.|++|+..
T Consensus 120 ~~~~~~~~~~~v~~wd~--~~~~~~-------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~ 178 (611)
T 1nr0_A 120 AVGEGRERFGHVFLFDT--GTSNGN-------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178 (611)
T ss_dssp EEECCSSCSEEEEETTT--CCBCBC-------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred EEECCCCCEEEEEEEEC--CCCCCE-------------------ECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECC
T ss_conf 99899773669999638--997632-------------------547889836999889998299999289809999799
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEEC-------CCCCCEEEEEEECCCCC
Q ss_conf 89832334775334577668999169990799999189919999967990678961-------88998789972037994
Q 002494 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-------GHEAPVYSVCPHHKESI 511 (915)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~ 511 (915)
+++... .+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++....+. +|...|.+++|+|++
T Consensus 179 ~~~~~~---~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-- 251 (611)
T 1nr0_A 179 PFKFKS---TFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-- 251 (611)
T ss_dssp TBEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS--
T ss_pred CCEEEE---EECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCC--
T ss_conf 975766---5200257169999979999--899998999199988999828665136643235667878999997999--
Q ss_pred CEEEEEECCCEEEEEECCCCCCEEEECCCC---CCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 199999679949999658998236850899---91799999799998999963379983399997899926899527778
Q 002494 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (915)
Q Consensus 512 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 588 (915)
+++++++.|++|++||+.+......+..+. .....+.| ++..+++++. ++.+++|+...+.....+.+|..
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~----d~~i~~~~~~~~~~~~~~~gh~~ 325 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA----NGFINFVNPELGSIDQVRYGHNK 325 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET----TCCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEEC----CCCEEEEECCCCCCCEEECCCCC
T ss_conf 99999908980999968887013440478876640689997--3887999958----99689996889974469837888
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEE
Q ss_conf 74479998599999999968991999969999147997179999983549995999999999589959999869985204
Q 002494 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668 (915)
Q Consensus 589 ~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 668 (915)
.+.+++|+|+++++++++.|+.|++||+.++.....+. ..+...+.+++|++++ .+++++.|+.+++|+..++. ..
T Consensus 326 -~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~-~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~-~~ 401 (611)
T 1nr0_A 326 -AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSG-VD 401 (611)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSS-SC
T ss_pred -CEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECC-CCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCC-CC
T ss_conf -88999991899989999589849999788792563216-6776507899987899-69999848966895468854-35
Q ss_pred ------EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEECCCCCEEEC
Q ss_conf ------22027877610267998878988301321567643224796458899999732333-46778411048860210
Q 002494 669 ------RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS-LGTIDGSRLVDVKPRVA 741 (915)
Q Consensus 669 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~s~dg~~la~ 741 (915)
..+.++ ...+.+ +|++..+..+. +..+.+|+... ...... .....++|+|||+++++
T Consensus 402 ~~~~~~~~~~~~---~~~~~~------s~dg~~~~~~~------~~~v~~~~~~~-~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 402 SSKAVANKLSSQ---PLGLAV------SADGDIAVAAC------YKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTSCCEEECSSC---EEEEEE------CTTSSCEEEEE------SSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEE
T ss_pred CCCEEEEECCCC---CCEEEE------ECCCCEEEEEE------CCEEEEEECCC-EEEEECCCCCEEEEEECCCCEEEE
T ss_conf 652120014899---707998------07996999996------76399984894-346406889549999289989999
Q ss_pred CCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-C---------------
Q ss_conf 378-94467624898996633586417866888569999931885287831255158765255-5---------------
Q 002494 742 EDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR-T--------------- 804 (915)
Q Consensus 742 ~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~-~--------------- 804 (915)
++. ++|++|++.. ..+......+ |...|++++||||+++|++++.|+++++|++.. .
T Consensus 466 gs~D~~v~lwd~~~----~~~~~~~~~~--h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 466 GGQDSKVHVYKLSG----ASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EETTSEEEEEEEET----TEEEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred ECCCCEEEEEECCC----CCEEEEECCC--CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCE
T ss_conf 68997399999459----9222410157--78860799998999989999489989998857787223210264046642
Q ss_pred ---CCCCCCCCCCCC----CCEEECCCCCCCEE-CCCCCCCCCCCCEEEEEEECCCCEEEEEC-CCEEEEEECC
Q ss_conf ---679999711100----32231499987300-14899998887412999712997599851-9925996615
Q 002494 805 ---ERNPSGKATANV----APQLWQPPSGTLMT-NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMM 869 (915)
Q Consensus 805 ---~~s~dg~~~~~~----~i~l~~~~~~~~~~-~~~~~~~h~~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~ 869 (915)
.|+|||+.++++ ++++|++.++.... ..+.+ |+...|++++|+||++ |++++ |++|++|++.
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~--h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCC--CCCCCEEEEEECCCCE-EEEECCCCCEEEEECC
T ss_conf 589989989979999799729999788755563264446--7656711899858997-9995288778998444
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=443.20 Aligned_cols=495 Identities=21% Similarity=0.330 Sum_probs=350.6
Q ss_pred CCCCCCCCEEECCCCCCCEEEECCC------CCCCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEE
Q ss_conf 2348975046428898743552588------7642789850-79977999991799939999947790999986998400
Q 002494 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (915)
Q Consensus 310 ~~~~~~~~~~~s~~g~~~~~~~~d~------~~~~~~~~l~-h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~ 382 (915)
.|.+.|.+++|+|+|+.+++.+.|. .++++++++. |...|++++|+||++ +|++++.|+.|++||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECC-CCEE
T ss_conf 899857999998998999999389989999799978999968989989999989999-99999698979999899-9789
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEE
Q ss_conf 24660565326676321010147775484999995899989999889859999904898323347753345776689991
Q 002494 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (915)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s 462 (915)
.. +.+|...|.+++|+|++++|++++.|+.+++|+..... .....++...+..+.++
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCE----EEECCCCCCCEEEEEEE
T ss_conf 99-------------------97899988999998999989998079833520235520----01104777743555420
Q ss_pred CCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCC
Q ss_conf 69990799999189919999967990678961889987899720379941999996799499996589982368508999
Q 002494 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (915)
Q Consensus 463 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 542 (915)
|++. .+++++.++.+++|+.. .........+...+.++.+++++ .++++++.|+.+++||.. ......+..+..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSS
T ss_pred CCCC--CCEECCCCCCEECCCCC-EEEEEECCCCCCCEEEEEECCCC--CEEEEECCCCEEEEEECC-CCEEEEEECCCC
T ss_conf 3776--32002555310000000-00000026877635665416997--789998599989999499-968999946889
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 17999997999989999633799833999978999268995277787447999859999999996899199996999914
Q 002494 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (915)
Q Consensus 543 ~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 622 (915)
.+.+++|+|+++++++++. ++.+++||.. ++.+..+.+|.. .+.+++|+|+++.+++++.|+.+++|+.. ++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~~-~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNRN-GQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECTT-SCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCE
T ss_pred CEEEEEECCCCCEEEEEEC----CCEEEEEECC-CCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECC-CCE
T ss_conf 8899999799999999918----9989999599-979999806889-87999996899999999599979999489-958
Q ss_pred EEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 79971799999835499959999999995899599998699852042202787761026799887898830132156764
Q 002494 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (915)
Q Consensus 623 ~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 702 (915)
...+.+|.. .|++++|+|++..+++++.|+.|++|+.... ....+.+|...+..+.+. |+++.+++++.+
T Consensus 296 ~~~~~~h~~--~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s------~~g~~l~~~~~d 365 (577)
T 2ymu_A 296 LQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFS------PDGQTIASASDD 365 (577)
T ss_dssp EEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEEC------TTSSEEEEEETT
T ss_pred EEEEECCCC--CEEEEEECCCCCEEEEEECCCEEEEEECCCC--EEEEEECCCCCEEEEEEC------CCCCEEEEEECC
T ss_conf 999706889--7699999999999999969995999969997--257874788977999998------999999999699
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCC--CCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 3224796458899999732-333467--78411048860210378-9446762489899663358641786688856999
Q 002494 703 SAAIAPTLERPDRGPPAVS-ISSLGT--IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (915)
Q Consensus 703 ~~~~~~~v~~~~~~~~~~~-~~~~~~--~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l 778 (915)
+ ++.+|+....... ...... ..+.|+||++++++++. +.|++|+.. +..+. .+.+ |...|+++
T Consensus 366 g-----~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----~~~~~--~~~~--~~~~v~~~ 432 (577)
T 2ymu_A 366 K-----TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQ--TLTG--HSSSVWGV 432 (577)
T ss_dssp S-----EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----CCEEE--EEEC--CSSCEEEE
T ss_pred C-----EEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC----CCEEE--EECC--CCCCEEEE
T ss_conf 9-----8999908997899852788974899998999999999499989999699----97898--9628--89975799
Q ss_pred EEECCCCEEEEEECCCEEEEEECCCCC---------------CCCCCCCCCCC----CCEEECCCCCCCEECCCCCCCCC
Q ss_conf 993188528783125515876525556---------------79999711100----32231499987300148999988
Q 002494 779 IYTNSGLSLLALASNAVHKLWKWQRTE---------------RNPSGKATANV----APQLWQPPSGTLMTNDINESKPT 839 (915)
Q Consensus 779 ~~s~d~~~l~~~~~dg~v~iW~l~~~~---------------~s~dg~~~~~~----~i~l~~~~~~~~~~~~~~~~~h~ 839 (915)
+|+||+++|++++.|+.+++|+..... ++|||+.++++ .+++|+. ++..+.. +.+ |
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~-~~~--h- 507 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTG--H- 507 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE-EEC--C-
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEE-EEC--C-
T ss_conf 9989999999993999899997999889997278997789999699999999919897999939-9978999-867--9-
Q ss_pred CCCEEEEEEECCCCEEEEEC-CCEEEEEECCC
Q ss_conf 87412999712997599851-99259966158
Q 002494 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 840 ~~~i~~l~~S~dg~~L~s~s-d~~i~iw~l~t 870 (915)
...|++++|||||++||+++ |+.|++||...
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEECCC
T ss_conf 99989999918999999998969999996999
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=412.34 Aligned_cols=496 Identities=13% Similarity=0.116 Sum_probs=364.0
Q ss_pred CCCCCEEECCCCCCCEEEE------CCCCCC----CEEEEEC-CCCC-EEEEEECC--CCCEEEEEEECCCCEEEEECCC
Q ss_conf 8975046428898743552------588764----2789850-7997-79999917--9993999994779099998699
Q 002494 313 GQSDEVSFAGVAHTPNVYS------QDDLTK----TVVRTLN-QGSN-VMSMDFHP--QQQTILLVGTNVGDISLWEVGS 378 (915)
Q Consensus 313 ~~~~~~~~s~~g~~~~~~~------~d~~~~----~~~~~l~-h~~~-V~~i~fsp--d~~~ll~~gs~dg~i~iwd~~~ 378 (915)
..+..++|+|+|+.+++.. ++..++ +....+. |... |.+++|+| +++ ++++|+.||.|++|++.+
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCC-EEEEECCCCEEEEEECCC
T ss_conf 8536899889999799935984999977788776514318805788449999979678998-899964898799976888
Q ss_pred CCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECC----CEEEEEEECCCCCEEEEEEEECCCC
Q ss_conf 840024660565326676321010147775484999995899989999889----8599999048983233477533457
Q 002494 379 RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVG 454 (915)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~ 454 (915)
+....... ......+..|...|.+++|+|+++++++++.+ +.|++|+ .++... .+.+|..
T Consensus 98 ~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~ 161 (615)
T 1pgu_A 98 DKESNSVE-----------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQ 161 (615)
T ss_dssp EGGGTEEE-----------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSS
T ss_pred CCCCCCCC-----------CCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCCCE---EEECCCC
T ss_conf 76554455-----------4200011125663799999079998999316877755799997--898103---1306774
Q ss_pred CEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCCCC---CEEEEEEECCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 76689991699907999991899199999679906789618899---878997203799419999967994999965899
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (915)
Q Consensus 455 ~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 531 (915)
.|.+++|+|++.. .+++++.|+.+++||+.+++.+..+.+|.. .|.+++|+|+ +++++++++.|+.|++||+.+.
T Consensus 162 ~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 162 RINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp CEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTC
T ss_pred CEEEEEECCCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCC-CCCEEEEEECCCEEEEEECCCC
T ss_conf 3889998878996-8999957995999969996101320256777742899997897-7888999868980899989999
Q ss_pred CCEEEE-C---CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEECCCC---CCCEEEEEECCCCCEEE
Q ss_conf 823685-0---8999179999979999899996337998339999789992689952777---87447999859999999
Q 002494 532 GSRVDY-D---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFL 604 (915)
Q Consensus 532 ~~~~~~-~---~~~~~i~~i~~sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~ 604 (915)
.....+ . .+...+.+++|+ +++++++++. ++.+++||+.+++.+..+..+. ...+.++.|+ ++.+++
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII 313 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred CEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECC----CCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEE
T ss_conf 78589525444567755899981-8997999848----99489997888927878847877545714699918-997699
Q ss_pred EEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99689919999699991479971799999835499959999999995899599998699852042202787761026799
Q 002494 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (915)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 684 (915)
+++.||.|++||+.+++.+..+..|.. .|++++| |+ +++++.||.|++|++. .+. .+|...+..+.+.
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~--~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP---LISGSYDGRIMEWSSS----SMH--QDHSNLIVSLDNS 381 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT---TEEEETTSCEEETTTT----EEE--CCCCSCEEEEECC
T ss_pred EEECCCCEEEEECCCCCEEEEEECCCC--CEEEEEE-CC---CEEECCCCEEEEEECH----HHC--CCCCCCEEEEEEC
T ss_conf 997899789998889928899947778--7899995-67---4898799959998752----415--7556851799978
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC----------------------------------C--CCCCCCC-
Q ss_conf 88789883013215676432247964588999997----------------------------------3--2333467-
Q 002494 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPA----------------------------------V--SISSLGT- 727 (915)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------------------------------~--~~~~~~~- 727 (915)
++..+++++. ++.+.+|+..... . ....-..
T Consensus 382 -------~~~~l~~~~~-----d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (615)
T 1pgu_A 382 -------KAQEYSSISW-----DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG 449 (615)
T ss_dssp -------STTCCEEEET-----TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred -------CCCEEEEEEC-----CCCEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCC
T ss_conf -------9867999958-----9979998866676367846999828987899967982699944678665551567872
Q ss_pred CCCEECCCCCEEECCC--CCCEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 7841104886021037--89446762489899663358641786688856999993188528783125515876525556
Q 002494 728 IDGSRLVDVKPRVAED--VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805 (915)
Q Consensus 728 ~~~~~s~dg~~la~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~~ 805 (915)
..+.++ ++++++++ ++.+++|++.. .......+.+ |...|++++|+|++++|++++.|+.+++|++....
T Consensus 450 ~~~~~~--~~~l~~~~~~d~~i~~~~~~~----~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 450 SAVSLS--QNYVAVGLEEGNTIQVFKLSD----LEVSFDLKTP--LRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp EEEEEC--SSEEEEEETTTSCEEEEETTE----EEEEEECSSC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEC--CCEEEEEECCCCEEEEEECCC----CCCCCCCCCC--CCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCC
T ss_conf 077883--888999656898699998888----5435333677--65750799998999989981799859986577776
Q ss_pred -----------------CCC----------CCCCCCCC----CCEEECCCCC-CCEECCCCCCCCCCCCEEEEEEECCCC
Q ss_conf -----------------799----------99711100----3223149998-730014899998887412999712997
Q 002494 806 -----------------RNP----------SGKATANV----APQLWQPPSG-TLMTNDINESKPTEESAACIALSKNDS 853 (915)
Q Consensus 806 -----------------~s~----------dg~~~~~~----~i~l~~~~~~-~~~~~~~~~~~h~~~~i~~l~~S~dg~ 853 (915)
++| +++.++++ .+++|++.++ ..+.. +.+ | ...|++++|++|++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~--h-~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNA--H-KDGVNNLLWETPST 597 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTS--S-TTCEEEEEEEETTE
T ss_pred CEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHH-HHC--C-CCCEEEEEECCCCC
T ss_conf 2467604788714699976832345332468888999817971999977888540311-335--9-43058999738997
Q ss_pred EEEEEC-CCEEEEEECCC
Q ss_conf 599851-99259966158
Q 002494 854 YVMSAS-GGKVSLFNMMT 870 (915)
Q Consensus 854 ~L~s~s-d~~i~iw~l~t 870 (915)
|++++ |+.|++|++.+
T Consensus 598 -l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 598 -LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -EEEEETTSCEEEEEEC-
T ss_pred -EEEECCCCEEEEEEEEC
T ss_conf -28845996399996015
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=408.39 Aligned_cols=518 Identities=10% Similarity=0.034 Sum_probs=316.9
Q ss_pred CCCCCCCCEEECCCCCCCEEEECCC-------CCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEE
Q ss_conf 2348975046428898743552588-------764278985079977999991799939999947790999986998400
Q 002494 310 IRTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (915)
Q Consensus 310 ~~~~~~~~~~~s~~g~~~~~~~~d~-------~~~~~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~ 382 (915)
.+...+.+++|+|+|+.+++...|. ...+....+.|...|.+++|+| ++ ++++++.|+.|++||+.+++.+
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEE
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECC-CC-EEEEEECCCEEEEEECCCCCEE
T ss_conf 889984899997999989999297989999689947999868999779999908-98-8999989595999989999689
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCEEEE--------EEEECCCC
Q ss_conf 2466056532667632101014777548499999589998999988985999990489832334--------77533457
Q 002494 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------LEIDAHVG 454 (915)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~spd~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~h~~ 454 (915)
.. + .|...|++++|+|+++++++|+.||.|++||+.++...... ..+.+|.+
T Consensus 93 ~~-------------------~-~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 93 TT-------------------V-FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EE-------------------E-ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EE-------------------E-CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 99-------------------7-489987999987999989999499929999999996265030432100025445789
Q ss_pred CEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEEEEECCC------------------CCCEEEEEEECCCCCCEEEE
Q ss_conf 766899916999079999918991999996799067896188------------------99878997203799419999
Q 002494 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH------------------EAPVYSVCPHHKESIQFIFS 516 (915)
Q Consensus 455 ~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~~l~s 516 (915)
.|.+++|+|++.. .+++++.|+.+ +||+.+++++..+..| ...|.+++|+|+ +.++++
T Consensus 153 ~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~las 228 (902)
T 2oaj_A 153 PIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIIT 228 (902)
T ss_dssp CCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEE
T ss_pred CEEEEEECCCCCC-EEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--CCEEEE
T ss_conf 7389997669999-89999189849-9987789657998335577677765443323456777689998599--999999
Q ss_pred EECCCEEEEEECCCCCCEEE--E---CC-------------CCCCEEEEEEC----CCCC-EEEEEEECCC-CCCEEEEE
Q ss_conf 96799499996589982368--5---08-------------99917999997----9999-8999963379-98339999
Q 002494 517 TAIDGKIKAWLYDYLGSRVD--Y---DA-------------PGNWCTMMAYS----ADGT-RLFSCGTSKE-GESHLVEW 572 (915)
Q Consensus 517 ~~~dg~i~iwd~~~~~~~~~--~---~~-------------~~~~i~~i~~s----p~g~-~l~~~~~~~~-~~~~i~iw 572 (915)
++.|+.|++||+++++.... + .. +...|.+++|+ |++. .+++++.+.+ ....+.+|
T Consensus 229 gs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~ 308 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMI 308 (902)
T ss_dssp EETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEE
T ss_pred EECCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 98999399998789968888850123457877767888855567745799973499988789996887777888528999
Q ss_pred ECC------------------CCEEEEEECC-CCCCCEEEEEECC----------CCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 789------------------9926899527-7787447999859----------9999999968991999969999147
Q 002494 573 NES------------------EGAIKRTYSG-FRKRSLGVVQFDT----------TRNRFLAAGDEFQIKFWDMDNMNML 623 (915)
Q Consensus 573 d~~------------------~~~~~~~~~~-~~~~~v~~~~~sp----------~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (915)
+.. .++....+.. +.. .+..+.+.+ +...+++++.||.|++|++.++...
T Consensus 309 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~ 387 (902)
T 2oaj_A 309 DLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387 (902)
T ss_dssp EEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEE
T ss_pred ECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf 54789875554255654664174522787418999-54799997788988677878506999917984899978999855
Q ss_pred EE-------EC--------------------------------CCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99-------71--------------------------------7999998354999599999999958995999986998
Q 002494 624 TT-------VD--------------------------------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (915)
Q Consensus 624 ~~-------~~--------------------------------~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iwd~~~~ 664 (915)
.. +. ..++...+.+++|+|+++++++++.|++|++||+.++
T Consensus 388 ~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g 467 (902)
T 2oaj_A 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHG 467 (902)
T ss_dssp CCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCC
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCC
T ss_conf 65556898522358972489999749999988886046999754578577875333666758999658983899978776
Q ss_pred CEEE--EE----CC-----CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC--------------
Q ss_conf 5204--22----02-----78776102679988789883013215676432247964588999997--------------
Q 002494 665 VRLL--RM----LE-----GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA-------------- 719 (915)
Q Consensus 665 ~~~~--~~----~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 719 (915)
.+. .. +. +|...+..++++ |+++.+++++.++ ++++|+.....
T Consensus 468 -~~~~~~~~~~~l~~~~~~~h~~~V~svafs------pdg~~LAsgs~Dg-----tV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 468 -DIQDNASFEVNLSRTLNKAKELAVDKISFA------AETLELAVSIETG-----DVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp -TTTTTBCEEEEHHHHTTCSSSCCEEEEEEE------TTTTEEEEEETTS-----CEEEEEEEECCC-------------
T ss_pred -CCCCCCEEEEECHHHCCCCCCCCEEEEEEC------CCCCEEEEEECCC-----EEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf -456773677501541377888764699963------8999699994585-----7999992486555754557786651
Q ss_pred ------------------------------CCCCCCC---C--CCCEECCCCCEEECCCC-CCEEEEECCCCCCCCCEEE
Q ss_conf ------------------------------3233346---7--78411048860210378-9446762489899663358
Q 002494 720 ------------------------------VSISSLG---T--IDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKA 763 (915)
Q Consensus 720 ------------------------------~~~~~~~---~--~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~~~~~~ 763 (915)
.....+. + ..++||||| ++|+++. ++|++||+.. +..+..
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~---~~~~~~ 611 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG---PAIIYM 611 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT---TEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCC---CEEEEE
T ss_conf 1345513467965432242368988777601469998688867799964876-899995897699998889---839997
Q ss_pred EE---CCCCCCCCCEEEEEEE-----CCC---CEEEEEECCCEEEEEEC---CCCC----------------------CC
Q ss_conf 64---1786688856999993-----188---52878312551587652---5556----------------------79
Q 002494 764 LR---LPDSIAASKVVRLIYT-----NSG---LSLLALASNAVHKLWKW---QRTE----------------------RN 807 (915)
Q Consensus 764 ~~---~~~~~h~~~I~~l~~s-----~d~---~~l~~~~~dg~v~iW~l---~~~~----------------------~s 807 (915)
.. +. .+|...|++++|| ||| ++|++++.|++|++|++ ..+. ++
T Consensus 612 ~~~~~~~-~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~ 690 (902)
T 2oaj_A 612 ENIREIS-GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFS 690 (902)
T ss_dssp EEGGGTC-SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred EEHHHHC-CCCCCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEE
T ss_conf 0246726-466661399999998417898763389999568739999995589986899966724407889647998586
Q ss_pred ----------------------CCCCCCCCC--CCEEECCCCCCCEECCCCCCCCCCCCEEEE---E------EECCCCE
Q ss_conf ----------------------999711100--322314999873001489999888741299---9------7129975
Q 002494 808 ----------------------PSGKATANV--APQLWQPPSGTLMTNDINESKPTEESAACI---A------LSKNDSY 854 (915)
Q Consensus 808 ----------------------~dg~~~~~~--~i~l~~~~~~~~~~~~~~~~~h~~~~i~~l---~------~S~dg~~ 854 (915)
++|..++.. .+++|++.+++.....+. | ...+.++ . |++++..
T Consensus 691 ~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~~~ir~~~~~~~k~~~k~~~---~-~~~~~~v~~~~~~~~~~~~~~~~~ 766 (902)
T 2oaj_A 691 KETKSSCLATIPKMQNLSKGLCIPGIVLITGFDDIRLITLGKSKSTHKGFK---Y-PLAATGLSYISTVEKNNDRKNLTV 766 (902)
T ss_dssp TTTCCBCBCBHHHHHGGGGTCCCCEEEEEECSSEEEEECTTCCCEEEEECS---S-CEEEEEEEEEEEECSSSCEEEEEE
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCCEEEEEEECCCEEEEECCCCCCEEEECC---C-CEEEEEEEEEEECCCCCCCCCCEE
T ss_conf 687973668878972557788777399999354059996753351236725---6-201447778870135554467369
Q ss_pred EEEEC-CCEEEEEECCCCCCCC
Q ss_conf 99851-9925996615899997
Q 002494 855 VMSAS-GGKVSLFNMMTFKPPF 875 (915)
Q Consensus 855 L~s~s-d~~i~iw~l~t~k~~~ 875 (915)
|++++ ||+|++|++-+.+...
T Consensus 767 l~~~~~~g~i~~~s~p~l~~~~ 788 (902)
T 2oaj_A 767 IITLEINGHLRVFTIPDFKEQM 788 (902)
T ss_dssp EEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEECCCCEEEEECCCHHHHH
T ss_conf 9999279959999785647784
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=397.43 Aligned_cols=467 Identities=10% Similarity=0.070 Sum_probs=317.3
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 78985079977999991799939999947790999986998400246605653266763210101477754849999958
Q 002494 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (915)
Q Consensus 339 ~~~~l~h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~sp 418 (915)
....+.|.+.|++++|+|+++ ++|+|+.||.|++|+..+.+.... ..|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET
T ss_pred CCCCCCCCCCCEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEE--------------------CCCCCCEEEEEECC
T ss_conf 202168899848999979999-899992979899996899479998--------------------68999779999908
Q ss_pred CCCEEEEEECCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEECCCCEEE--------
Q ss_conf 999899998898599999048983233477533457766899916999079999918991999996799067--------
Q 002494 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-------- 490 (915)
Q Consensus 419 d~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------- 490 (915)
+++|++++.|+.|++||+.+++.+. .+. |...|++++|+|++. ++++|+.||.|++||+.+++..
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECCCEEEEEECCCCCEEE---EEC-CCCCEEEEEECCCCC--EEEEECCCCCEEEEECCCCCCCCCEECCCC
T ss_conf -9889999895959999899996899---974-899879999879999--899994999299999999962650304321
Q ss_pred ---EEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCC------------------CCCEEEEEE
Q ss_conf ---89618899878997203799419999967994999965899823685089------------------991799999
Q 002494 491 ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAY 549 (915)
Q Consensus 491 ---~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~i~~ 549 (915)
..+.+|...|.+++|+|+ ++..+++++.|+.+ +||++.......+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEECCC-CCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 000254457897389997669-99989999189849-9987789657998335577677765443323456777689998
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE--EC---CC------------CCCCEEEEEEC----CCC-CEEEEEE
Q ss_conf 799998999963379983399997899926899--52---77------------78744799985----999-9999996
Q 002494 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAG 607 (915)
Q Consensus 550 sp~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~v~~~~~s----p~~-~~l~~~~ 607 (915)
+|+|+++++++. |+.|++||+++++++.. +. .| ....|.+++|+ |++ ..+++++
T Consensus 220 spdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred CCCCCEEEEEEC----CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECC
T ss_conf 599999999989----9939999878996888885012345787776788885556774579997349998878999688
Q ss_pred CC-----CCEEEEECC------------------CCCEEEEECCCCCCCCCCEEEECC----------CCCEEEEEECCC
Q ss_conf 89-----919999699------------------991479971799999835499959----------999999995899
Q 002494 608 DE-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDN 654 (915)
Q Consensus 608 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~i~~s~----------~~~~l~s~~~dg 654 (915)
.+ ..+.+|++. +.+....+... +...+..+.+.+ +...+++++.||
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECC-CCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 777788852899954789875554255654664174522787418-9995479999778898867787850699991798
Q ss_pred CEEEEECCCCCEEEEE------CCCCCCCCCCCCCCC----------------------------CCCCCCCEEEECCCC
Q ss_conf 5999986998520422------027877610267998----------------------------878988301321567
Q 002494 655 GIKILANSDGVRLLRM------LEGRAMDKNRCPSEP----------------------------ISSKPLTINALGPAS 700 (915)
Q Consensus 655 ~i~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~----------------------------~~~~~~~~~~~~~~~ 700 (915)
.|++|++.++..+... +..|...+..+.+.. ....+|+++.+++++
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs 454 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH 454 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 48999789998556555689852235897248999974999998888604699975457857787533366675899965
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC--------------CCCCCCEECCCCCEEECCCC-CCEEEEECCCCCCC------
Q ss_conf 6432247964588999997323-33--------------46778411048860210378-94467624898996------
Q 002494 701 NVSAAIAPTLERPDRGPPAVSI-SS--------------LGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDP------ 758 (915)
Q Consensus 701 ~~~~~~~~~v~~~~~~~~~~~~-~~--------------~~~~~~~~s~dg~~la~~~~-~~i~iw~~~~~~~~------ 758 (915)
.|+ ++++|+........ .. ..-..++|+||++++|+++. ++|++|++......
T Consensus 455 ~Dg-----tVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 455 SNG-----SVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp TTS-----EEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred CCC-----CEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCC
T ss_conf 898-----389997877645677367750154137788876469996389996999945857999992486555754557
Q ss_pred --CC--------------------------------EEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf --63--------------------------------35864178668885699999318852878312551587652555
Q 002494 759 --SQ--------------------------------IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (915)
Q Consensus 759 --~~--------------------------------~~~~~~~~~~h~~~I~~l~~s~d~~~l~~~~~dg~v~iW~l~~~ 804 (915)
.. .....+.+ |.+.|++++||||| +|++++.|++|++|++.
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~-- 604 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR-- 604 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETT--
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC--CCCCEEEEEECCCC-EEEEEECCCCEEEEECC--
T ss_conf 78665113455134679654322423689887776014699986--88867799964876-89999589769999888--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCEE----CCCC-CCCCCCCCEEEEEEE-----CCC---CEEEEEC-CCEEEEEEC--
Q ss_conf 67999971110032231499987300----1489-999888741299971-----299---7599851-992599661--
Q 002494 805 ERNPSGKATANVAPQLWQPPSGTLMT----NDIN-ESKPTEESAACIALS-----KND---SYVMSAS-GGKVSLFNM-- 868 (915)
Q Consensus 805 ~~s~dg~~~~~~~i~l~~~~~~~~~~----~~~~-~~~h~~~~i~~l~~S-----~dg---~~L~s~s-d~~i~iw~l-- 868 (915)
++..+. ..+. + | .+.|++++|| +|| ++|++++ |++|++|++
T Consensus 605 --------------------~~~~~~~~~~~~~~~g--h-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 605 --------------------GPAIIYMENIREISGA--Q-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp --------------------TTEEEEEEEGGGTCSS--C-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred --------------------CCEEEEEEEHHHHCCC--C-CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf --------------------9839997024672646--6-6613999999984178987633899995687399999955
Q ss_pred -CCCCC
Q ss_conf -58999
Q 002494 869 -MTFKP 873 (915)
Q Consensus 869 -~t~k~ 873 (915)
.+++.
T Consensus 662 ~~~g~~ 667 (902)
T 2oaj_A 662 ASGGKF 667 (902)
T ss_dssp CGGGCE
T ss_pred CCCCCE
T ss_conf 899868
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=394.98 Aligned_cols=467 Identities=12% Similarity=0.143 Sum_probs=372.2
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC----CEECCCCEEEEECCCCCCCCCCCCCCCCCCC-EEEEEECC-
Q ss_conf 79977999991799939999947790999986998----4002466056532667632101014777548-49999958-
Q 002494 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (915)
Q Consensus 345 h~~~V~~i~fspd~~~ll~~gs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~i~~sp- 418 (915)
|.+.|.+++|+|+++ ++++++ ++.|.+|++.++ +.... +.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred CCCCEEEEEECCCCC-EEEEEC-CCEEEEEECCCCCCCCCCCEE-------------------EECCCCCEEEEEEECCC
T ss_conf 658536899889999-799935-984999977788776514318-------------------80578844999997967
Q ss_pred -CCCEEEEEECCCEEEEEEECCCC-----CEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECC----CCEEEEECCCCE
Q ss_conf -99989999889859999904898-----32334775334577668999169990799999189----919999967990
Q 002494 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (915)
Q Consensus 419 -d~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~i~~s~~~~~~~l~s~~~d----~~i~iwd~~~~~ 488 (915)
++++|++++.||.|++|++.++. .......+..|...|.+++|+|++. ++++++.+ +.+++|| .++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCC--EEEEECCCCCCCCEEEEEE--CCC
T ss_conf 899889996489879997688876554455420001112566379999907999--8999316877755799997--898
Q ss_pred EEEEECCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCC---CEEEEEECCC-CCEEEEEEECCC
Q ss_conf 678961889987899720379941999996799499996589982368508999---1799999799-998999963379
Q 002494 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (915)
Q Consensus 489 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~i~~sp~-g~~l~~~~~~~~ 564 (915)
.+..+.+|...|.+++|+|++. ..+++++.|+.+++||+........+..+.. .+.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred CCEEEECCCCCEEEEEECCCCC-CEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEEC---
T ss_conf 1031306774388999887899-689999579959999699961013202567777428999978977888999868---
Q ss_pred CCCEEEEEECCCCEEEEEE-C---CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC--CCCCCEE
Q ss_conf 9833999978999268995-2---77787447999859999999996899199996999914799717999--9983549
Q 002494 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (915)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~i 638 (915)
++.|++||+.+++.+..+ . .|.. .+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCEEEEEECCCCCEEEEECCCCCCCCC-CEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEE
T ss_conf -980899989999785895254445677-55899981-899799984899489997888927878847877545714699
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99599999999958995999986998520422027877610267998878988301321567643224796458899999
Q 002494 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (915)
Q Consensus 639 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 718 (915)
.|+ ++.++++++.||.|++|++.++ +....+.+|...+..+.+ + + +++++. ++.+.+|+.. +
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~~~-~------~---l~~~~~-----dg~i~~w~~~-~ 366 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITALTV-N------P---LISGSY-----DGRIMEWSSS-S 366 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEEET-T------T---TEEEET-----TSCEEETTTT-E
T ss_pred EEC-CCCEEEEEECCCCEEEEECCCC-CEEEEEECCCCCEEEEEE-C------C---CEEECC-----CCEEEEEECH-H
T ss_conf 918-9976999978997899988899-288999477787899995-6------7---489879-----9959998752-4
Q ss_pred CCCCCCCCC-CCCEECCCCCEEECCCC-CCEEEEECCCCC-------------------------------CCCCEEEEE
Q ss_conf 732333467-78411048860210378-944676248989-------------------------------966335864
Q 002494 719 AVSISSLGT-IDGSRLVDVKPRVAEDV-DKIKSWRIPDIS-------------------------------DPSQIKALR 765 (915)
Q Consensus 719 ~~~~~~~~~-~~~~~s~dg~~la~~~~-~~i~iw~~~~~~-------------------------------~~~~~~~~~ 765 (915)
.. ...-.. ..+.+ +++..+++++. +.+++|++.... .+.......
T Consensus 367 ~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 367 MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred HC-CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECC
T ss_conf 15-755685179997-8986799995899799988666763678469998289878999679826999446786655515
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCCC-----------------CCCCCCCCCCC----CCEEECC
Q ss_conf 178668885699999318852878312-5515876525556-----------------79999711100----3223149
Q 002494 766 LPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTE-----------------RNPSGKATANV----APQLWQP 823 (915)
Q Consensus 766 ~~~~~h~~~I~~l~~s~d~~~l~~~~~-dg~v~iW~l~~~~-----------------~s~dg~~~~~~----~i~l~~~ 823 (915)
+...+.+++|+ ++++++++. |+.+++|++.... ++|+|+.++++ .+++|++
T Consensus 445 -----~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~ 517 (615)
T 1pgu_A 445 -----LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDL 517 (615)
T ss_dssp -----CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -----CCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEC
T ss_conf -----67872077883--88899965689869999888854353336776575079999899998998179985998657
Q ss_pred CCCCCEECCCCCCCCCCCCEEEEEEEC----------CCCEEEEEC-CCEEEEEECCCCCC
Q ss_conf 998730014899998887412999712----------997599851-99259966158999
Q 002494 824 PSGTLMTNDINESKPTEESAACIALSK----------NDSYVMSAS-GGKVSLFNMMTFKP 873 (915)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~l~~S~----------dg~~L~s~s-d~~i~iw~l~t~k~ 873 (915)
.+++.+...... | ...|++++|+| |+++|++++ |+.|++|++.++..
T Consensus 518 ~~~~~~~~~~~~--h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 575 (615)
T 1pgu_A 518 QSREVKTSRWAF--R-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 575 (615)
T ss_dssp TTTEEEECCSCC--C-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred CCCCCEEEEECC--C-CCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCE
T ss_conf 777624676047--8-871469997683234533246888899981797199997788854
Done!