Query 002495
Match_columns 915
No_of_seqs 1287 out of 3978
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 16:15:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002495.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1215-1219//hhsearch_pdb/002495hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 1.0 1 1 347.6 42.2 284 627-915 100-408 (410)
2 1nr0_A Actin interacting prote 1.0 1 1 339.9 42.7 286 624-915 179-608 (611)
3 3iz6_a 40S ribosomal protein R 1.0 1 1 334.2 34.0 290 623-915 54-372 (380)
4 1nr0_A Actin interacting prote 1.0 1 1 331.6 42.8 350 553-915 62-564 (611)
5 1got_B GT-beta; complex (GTP-b 1.0 1 1 331.5 46.4 289 622-915 42-340 (340)
6 3ow8_A WD repeat-containing pr 1.0 1 1 325.7 42.9 284 627-915 24-318 (321)
7 2pbi_B Guanine nucleotide-bind 1.0 1 1 323.9 46.0 290 622-915 51-354 (354)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 323.3 46.8 342 553-915 224-577 (577)
9 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 317.6 41.6 298 613-915 724-1155(1249)
10 3dm0_A Maltose-binding peripla 1.0 1 1 317.3 43.5 285 624-915 371-690 (694)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=347.62 Aligned_cols=284 Identities=26% Similarity=0.497 Sum_probs=265.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 44574159998599999389999999978991999978998234673247986789999899998999838980999977
Q 002495 627 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 706 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl 706 (915)
....+.+|.+.|+|++|+|++.+|++|+.|++|+|||+.+++....+.+|...|++++|++++.+|++|+.|++|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred CEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 30766166776899999699998999938985999989999377888166786878998599999999918981999958
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECCCCEEEEEECCCE
Q ss_conf 89995478842578875899974899919999818981999994799057886268---107999139998999984992
Q 002495 707 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENV 783 (915)
Q Consensus 707 ~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~~~~ll~~~~dg~ 783 (915)
.+ ..++..+.+|...|.+++|+|++. ++++++.|+.|++||++++.++..+.++ +..+.+++++..+++++.|+.
T Consensus 180 ~~-~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 180 QG-FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp TS-SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC-CCEEEEECCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 99-826699828999778999967999-9999968996999989999489999278862899999899999999918990
Q ss_pred EEEEECCCCEEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECC-EEEEEECCCCCCCCEEEEE
Q ss_conf 999988996089995179998479999299--------------------9999999499-0999987889986138883
Q 002495 784 VSILDAETQACRLSLQGHTKPIDSVCWDPS--------------------GELLASVSED-SVRVWTVGSGSEGECVHEL 842 (915)
Q Consensus 784 I~i~D~~t~~~~~~l~~h~~~V~si~~spd--------------------g~~las~s~d-~I~iwdl~s~~~~~~i~~~ 842 (915)
|++||+++..+...+.+|...|.+++|+|+ +.+|++++.| .|++||++++ .++..+
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC---CEEEEE
T ss_conf 99998989743667337874589999858655431012125555566788889999938984999988999---669999
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 149985399999179998999986980999988999289-9815689869999937999999996698299909
Q 002495 843 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 843 ~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+|...|.++.|+|++.+|++++.|+.|++||+.+++++ .+.+|...|++++|+|++.+|++|+.||.|+||+
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 77888589999949989999995979299998999906899847778689999828999999992799489973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=339.94 Aligned_cols=286 Identities=22% Similarity=0.354 Sum_probs=212.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEE
Q ss_conf 302445741599985999993899999999789919999789982346732-------4798678999989999899983
Q 002495 624 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-------EHSSLITDVRFSPSMPRLATSS 696 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~-------~h~~~V~~i~fspdg~~Lasgs 696 (915)
+.+....+.+|.+.|++++|+|++++||+++.|++|+|||+.+++.+..+. +|...|.+++|+|++.+|++++
T Consensus 179 ~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 97576652002571699999799998999989991999889998286651366432356678789999979999999990
Q ss_pred CCCEEEEEECCCCCCE-------------------------------------------EEEECCCCCCEEEEEECCCCC
Q ss_conf 8980999977899954-------------------------------------------788425788758999748999
Q 002495 697 FDKTVRVWDADNPGYS-------------------------------------------LRTFMGHSASVMSLDFHPNKD 733 (915)
Q Consensus 697 ~Dg~I~iwdl~~~~~~-------------------------------------------~~~~~~h~~~V~si~fsp~~~ 733 (915)
.|++|++||+.+ +.. ...+.+|...|++++|+|++.
T Consensus 259 ~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 259 ADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp TTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCC-CCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCC
T ss_conf 898099996888-7013440478876640689997388799995899689996889974469837888889999918999
Q ss_pred EEEEEEECCCCEEEEECCCCEEEEEE------------------------------------------------------
Q ss_conf 19999818981999994799057886------------------------------------------------------
Q 002495 734 DLICSCDGDGEIRYWSINNGSCTRVF------------------------------------------------------ 759 (915)
Q Consensus 734 ~ll~sgs~Dg~I~iwdi~~~~~~~~~------------------------------------------------------ 759 (915)
+|++++.|+.|++||+.++.+...+
T Consensus 338 -~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 338 -TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred -EEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCE
T ss_conf -8999958984999978879256321667765078999878996999984896689546885435652120014899707
Q ss_pred -------------------------------ECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEE--EEEECCCCCCEE
Q ss_conf -------------------------------26810799913999899998499299998899608--999517999847
Q 002495 760 -------------------------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC--RLSLQGHTKPID 806 (915)
Q Consensus 760 -------------------------------~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~--~~~l~~h~~~V~ 806 (915)
...+.++.|+|++..+++++.|+.|++||+..... ... .+|...|.
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~ 495 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEIT 495 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEE
T ss_pred EEEECCCCEEEEEECCEEEEEECCCEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEE
T ss_conf 99807996999996763999848943464068895499992899899996899739999945992224101-57788607
Q ss_pred EEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEE--ECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC--E-
Q ss_conf 99992999999999499-099998788998613888--31499853999991799989999869809999889992--8-
Q 002495 807 SVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE--LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--T- 880 (915)
Q Consensus 807 si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~--~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~--~- 880 (915)
+++|+|++++|++++.| .|++|++.+.. .++.. +..|...|.+++|+|++.+|++++.|+.|++|++..+. .
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~ 573 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 573 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred EEEECCCCCEEEEECCCCCEEEEECCCCC--CEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 99998999989999489989998857787--2232102640466425899899899799997997299997887555632
Q ss_pred EEECCC-CCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 998156-89869999937999999996698299909
Q 002495 881 MTLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 881 ~~~~~h-~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
..+.+| ...|++++|+|++. |++++.|++|++|+
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred HHHCCCCCCCEEEEEECCCCE-EEEECCCCCEEEEE
T ss_conf 644467656711899858997-99952887789984
No 3
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=334.18 Aligned_cols=290 Identities=17% Similarity=0.366 Sum_probs=256.3
Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 53024457415999859999938999999997899199997899823467324798678999989999899983898099
Q 002495 623 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 702 (915)
Q Consensus 623 ~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~ 702 (915)
..+....++++|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred CEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCEE
T ss_conf 21398200004534778999968999899991898099987888860148855998789999989999899954798589
Q ss_pred EEECCCCC------CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE--------CCCEEEEE
Q ss_conf 99778999------54788425788758999748999199998189819999947990578862--------68107999
Q 002495 703 VWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQMRF 768 (915)
Q Consensus 703 iwdl~~~~------~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~--------~~~~~i~~ 768 (915)
+|++.... .....+.+|...|.++.|.|++...+++++.|++|++||+++++++..+. ..+.++.|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEEEE
T ss_conf 99897775556773312640689754689999648997899977998199998677957899605667887567699992
Q ss_pred EC-CCCEEEEEECCCEEEEEECC-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCC
Q ss_conf 13-99989999849929999889-960899951799984799992999999999499-0999987889986138883149
Q 002495 769 QP-HLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN 845 (915)
Q Consensus 769 sp-~~~~ll~~~~dg~I~i~D~~-t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~ 845 (915)
.+ ++..+++++.|+.|++||++ ...++..+.+|...|.+++|+|++.+|++++.| .|++||++++ .++..+..+
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~ 290 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCC---CEEEEECCC
T ss_conf 06999989999789869999788897346998874887579999169996999838996999988899---688986156
Q ss_pred C-------CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EE----CCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 9-------85399999179998999986980999988999289-98----156898699999379999999966982999
Q 002495 846 G-------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TL----TAHEGLIAALAVSTETGYVASASHDKFVKL 913 (915)
Q Consensus 846 ~-------~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~----~~h~~~V~~ia~spdg~~Lasgs~Dg~I~I 913 (915)
. ..+.+++|+|++.++++++.|+.|++||+..++.. .+ .+|.+.|++++|+|++.+|++|+.|+.|+|
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 55566556863899988999989999799979999887781578970236777784579998999998999608998899
Q ss_pred CC
Q ss_conf 09
Q 002495 914 WK 915 (915)
Q Consensus 914 Wd 915 (915)
|+
T Consensus 371 W~ 372 (380)
T 3iz6_a 371 WA 372 (380)
T ss_dssp EE
T ss_pred EE
T ss_conf 95
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=331.62 Aligned_cols=350 Identities=16% Similarity=0.232 Sum_probs=270.1
Q ss_pred CCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEE-CCCCCCCCC------C--CCCCCCCCC
Q ss_conf 750899708981102---7998068477711665210000268877753441-026899987------8--888643235
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDTDPR------D--AGGRGMDVS 620 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~~~~------~--~~~~~~d~~ 620 (915)
...+.|+|||.++++ ++.++|||+..++..... ....+...|..+ +++++.... + ...+.|+.
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~----~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT----TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE----EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE----EECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC-
T ss_conf 599999999968999948997899489898415667----622557844899989999979999899773669999638-
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 6753024457415999859999938999-999997899199997899823467324798678999989999899983898
Q 002495 621 QGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 699 (915)
Q Consensus 621 ~~~~~~~~~~l~~H~~~V~~iafspdg~-~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg 699 (915)
.+....+.+|.+.|++++|+|++. +|++++.|++|++||..+.+...++.+|...|.+++|+|++++|++++.|+
T Consensus 137 ----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 137 ----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp ----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ----CCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf ----9976325478898369998899982999992898099997999757665200257169999979999899998999
Q ss_pred EEEEEECCCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE------------
Q ss_conf 099997789995478842-------5788758999748999199998189819999947990578862------------
Q 002495 700 TVRVWDADNPGYSLRTFM-------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------------ 760 (915)
Q Consensus 700 ~I~iwdl~~~~~~~~~~~-------~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~------------ 760 (915)
+|++||+.+ +..+..+. +|...|.+++|+|++. +|++++.|++|++||+++++++..+.
T Consensus 213 ~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 213 TIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp CEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CEEEEECCC-CCEEEEECCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEE
T ss_conf 199988999-8286651366432356678789999979999-99999089809999688870134404788766406899
Q ss_pred ----------------------------------CCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE-C------
Q ss_conf ----------------------------------68107999139998999984992999988996089995-1------
Q 002495 761 ----------------------------------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-Q------ 799 (915)
Q Consensus 761 ----------------------------------~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l-~------ 799 (915)
..+.++.|+|++..+++++.|+.|++||+.++.+...+ .
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v 370 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMI 370 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCE
T ss_pred EECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCEE
T ss_conf 97388799995899689996889974469837888889999918999899995898499997887925632166776507
Q ss_pred ---------------------------------------------------------------------------CCCCC
Q ss_conf ---------------------------------------------------------------------------79998
Q 002495 800 ---------------------------------------------------------------------------GHTKP 804 (915)
Q Consensus 800 ---------------------------------------------------------------------------~h~~~ 804 (915)
.|...
T Consensus 371 ~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~ 450 (611)
T 1nr0_A 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 450 (611)
T ss_dssp EEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECCCEEEEECCCC
T ss_conf 89998789969999848966895468854356521200148997079980799699999676399984894346406889
Q ss_pred EEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC-CCEEE
Q ss_conf 4799992999999999499-099998788998613888314998539999917999899998698099998899-92899
Q 002495 805 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NKTMT 882 (915)
Q Consensus 805 V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~-~~~~~ 882 (915)
+.+++|+|++++|++++.| .|++||+..+. ...+.. ..|...|.+++|+|++.+|++++.|+.|++|++.+ +++..
T Consensus 451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~-~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCC-EEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEE
T ss_conf 5499992899899996899739999945992-224101-57788607999989999899994899899988577872232
Q ss_pred ---ECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf ---815689869999937999999996698299909
Q 002495 883 ---LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 883 ---~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+..|...|++++|+|++++|++|+.|+.|+||+
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 102640466425899899899799997997299997
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=331.45 Aligned_cols=289 Identities=21% Similarity=0.422 Sum_probs=262.4
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 75302445741599985999993899999999789919999789982346732479867899998999989998389809
Q 002495 622 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 622 ~~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I 701 (915)
...++...++++|.+.|++++|++++++|++++.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+.|
T Consensus 42 ~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CCCCHHHEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEE
T ss_conf 10121100104877836899988999999998188968999899987433760388618899999999999998089819
Q ss_pred EEEECCCCC---CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEE
Q ss_conf 999778999---547884257887589997489991999981898199999479905788626---81079991399989
Q 002495 702 RVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRY 775 (915)
Q Consensus 702 ~iwdl~~~~---~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~l 775 (915)
++|++.+.. .....+.+|...|.++.|.+++ . +++++.|+.|++||+++++++..+.+ .+.++.|+|++..+
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCCCCCEEEEEECCCCCCEEEEEECCCC-C-EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEE
T ss_conf 9997966888613677844877638999987999-6-9999899929999899991889976999866899998999999
Q ss_pred EEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC--CCCCEEEE
Q ss_conf 999849929999889960899951799984799992999999999499-099998788998613888314--99853999
Q 002495 776 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSC 852 (915)
Q Consensus 776 l~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~--~~~~i~~i 852 (915)
++++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++.| .|++||++.+ ..+..+.. +...+.++
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred EEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCC---CEEEEECCCCCCCCEEEE
T ss_conf 99938993999778998167897487687799999499998999748981999988999---189997268852416999
Q ss_pred EEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 99179998999986980999988999289-9815689869999937999999996698299909
Q 002495 853 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 853 ~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+|+|++.++++++.|+.|++||+..++.. .+.+|.+.|.+++|+|++.+|++|+.|+.|+||+
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 9989999999977999099988413838658505778488999829999899972886189559
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=325.68 Aligned_cols=284 Identities=18% Similarity=0.370 Sum_probs=260.6
Q ss_pred EEEEEECCCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf 44574159998599999389----9999999789919999789982--34673247986789999899998999838980
Q 002495 627 EANSVRASTSKVICCHFSSD----GKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 700 (915)
Q Consensus 627 ~~~~l~~H~~~V~~iafspd----g~~Latgs~Dg~I~iwd~~~~~--~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~ 700 (915)
....+++|.+.|++++|+++ +.+|++|+.|++|+||++.... ....+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred EEEECCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 45521568896799998248888888899984999899988989974366600567788899998899998999937980
Q ss_pred EEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEEC---CCEEEEEECCCCEEEE
Q ss_conf 9999778999547884257887589997489991999981898199999479905788626---8107999139998999
Q 002495 701 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 777 (915)
Q Consensus 701 I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~---~~~~i~~sp~~~~ll~ 777 (915)
|++||+.+ +..+..+..+...+.+++|+|++. ++++++.|+.|++|++++++....+.. .+.++.|+|++..+++
T Consensus 104 i~lWd~~~-~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLEN-GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTT-TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCC-CCEEEEEECCCCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEE
T ss_conf 99997899-979899937985679999999999-8999838991999986799466774389942999999899999999
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEEC
Q ss_conf 9849929999889960899951799984799992999999999499-099998788998613888314998539999917
Q 002495 778 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 856 (915)
Q Consensus 778 ~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~sp 856 (915)
++.|+.|++||+++++++..+.+|..+|.+++|+|++.+|++++.| .|++||++.+ .++..+..|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred ECCCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC---CEEEEECCCCCCEEEEEECC
T ss_conf 928983999999999099998025896018999489998999909980999878996---32589868888268999979
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9998999986980999988999289-9815689869999937999999996698299909
Q 002495 857 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 857 dg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
++.+|++++.|+.|++||+.+++++ .+.+|.+.|++++|++++.+|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 999899981898099994999888889837877389999989999999975898089995
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=1.00 E-value=1 Score=323.90 Aligned_cols=290 Identities=19% Similarity=0.352 Sum_probs=258.8
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 75302445741599985999993899999999789919999789982346732479867899998999989998389809
Q 002495 622 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 701 (915)
Q Consensus 622 ~~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I 701 (915)
.+.++....+++|.+.|+|++|++++.+|++|+.|++|+|||..+.+....+..|...|.+++|+|++.+|++++.|+.|
T Consensus 51 ~~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 51 QFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp CCCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCE
T ss_conf 52227879964889808899998999989999289829999899987535774278877999998999979971389988
Q ss_pred EEEECCCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEECC---CEEEEEECC--
Q ss_conf 999778999-----5478842578875899974899919999818981999994799057886268---107999139--
Q 002495 702 RVWDADNPG-----YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPH-- 771 (915)
Q Consensus 702 ~iwdl~~~~-----~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~~~---~~~i~~sp~-- 771 (915)
++|++.... .....+.+|...|.+++|++++.. +++++.|++|++||+++++++..+.++ +.++.+.+.
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEEEECCC
T ss_conf 99997425665533331163066784789999689999-99991899589976777819999927899869999875799
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECC--CCCC
Q ss_conf 9989999849929999889960899951799984799992999999999499-099998788998613888314--9985
Q 002495 772 LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNK 848 (915)
Q Consensus 772 ~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~--~~~~ 848 (915)
+..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++.| .|++||++.. ..+..+.. +...
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFG 286 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSC
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECCCCCCCC
T ss_conf 999999947995999988899277983588788179999589998999969981999988899---67888747874034
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 399999179998999986980999988999289-9815689869999937999999996698299909
Q 002495 849 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 849 i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
+.++.|+|++.++++++.|+.|++||+.++..+ .+.+|.+.|++++|+|++.+|++|+.|+.|+||+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 55999947999999997899299998988955779987899578999989999999982888889619
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=323.34 Aligned_cols=342 Identities=26% Similarity=0.456 Sum_probs=281.0
Q ss_pred CCEEEEECCCCCEEC---CCCCEEEECCCCHHHHHHHHHCCCCCCCCCEEEE-CCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 750899708981102---7998068477711665210000268877753441-026899----98788886432356753
Q 002495 553 KPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESF-LSHDDT----DPRDAGGRGMDVSQGFS 624 (915)
Q Consensus 553 ~~~~~fs~dg~~~~~---~~~~~iwd~~~~~~~~~~~~~~~~gs~d~~v~~~-~~~~~~----~~~~~~~~~~d~~~~~~ 624 (915)
...+.|++|+..+++ ++.+++||.....+ ..+ ......+... +.++.. ...+...+.|+. .
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~-~~~------~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~----~ 292 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTL------TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----N 292 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEE------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEET----T
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEE-EEE------ECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC----C
T ss_conf 89999979999999991899899995999799-998------068898799999689999999959997999948----9
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 02445741599985999993899999999789919999789982346732479867899998999989998389809999
Q 002495 625 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 704 (915)
Q Consensus 625 ~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iw 704 (915)
.+....+.+|...|++++|+|++.+|++++.|+.|++|+... ..+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 293 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 958999706889769999999999999996999599996999-7257874788977999998999999999699989999
Q ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEEE---CCCEEEEEECCCCEEEEEECC
Q ss_conf 77899954788425788758999748999199998189819999947990578862---681079991399989999849
Q 002495 705 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAE 781 (915)
Q Consensus 705 dl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~~---~~~~~i~~sp~~~~ll~~~~d 781 (915)
+.. +..+..+.+|...|.+++|+|++.. |++++.|+.|++||.. ++.+..+. ..+.++.|+|++..+++++.|
T Consensus 372 ~~~--~~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NRN--GQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp ETT--CCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCC--CCEEEEECCCCCCEEEEEECCCCCE-EEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEEECCCCCEEEEECCC
T ss_conf 089--9789985278897489999899999-9999499989999699-97898962889975799998999999999399
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 929999889960899951799984799992999999999499-0999987889986138883149985399999179998
Q 002495 782 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 860 (915)
Q Consensus 782 g~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~i~~i~~spdg~~ 860 (915)
+.|++||. +++.+..+.+|...|.+++|+|++++|++++.| .|++|+.. + .++..+..|...|.+++|+|++++
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSC
T ss_pred CEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCC-C---CEEEEEECCCCCEEEEEECCCCCE
T ss_conf 98999979-998899972789977899996999999999198979999399-9---789998679999899999189999
Q ss_pred EEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 9999869809999889992899815689869999937999999996698299909
Q 002495 861 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 861 lisgs~dg~I~iwd~~~~~~~~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
|++++.|+.|++||.....+..+.+|.+.|++++|+||+++|++++.|+.|++||
T Consensus 523 l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999896999999699978989718888878999968999999990899999969
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=317.56 Aligned_cols=298 Identities=21% Similarity=0.366 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-------------------
Q ss_conf 8864323567530244574159998599999389999999978991999978998234673-------------------
Q 002495 613 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------------- 673 (915)
Q Consensus 613 ~~~~~d~~~~~~~~~~~~l~~H~~~V~~iafspdg~~Latgs~Dg~I~iwd~~~~~~~~~l------------------- 673 (915)
..+.|++.. .+....+.+|.+.|++++|+|++.+|++++.||.|++||+.++.....+
T Consensus 724 ~v~vwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 724 FLKLWDLNQ---KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp CEEEEETTS---SSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred EEEEEECCC---CCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCE
T ss_conf 099998999---63422012777978899992599989999789859999688886553020232102467764456501
Q ss_pred ------------------------------------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEC
Q ss_conf ------------------------------------24798678999989999899983898099997789995478842
Q 002495 674 ------------------------------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 717 (915)
Q Consensus 674 ------------------------------------~~h~~~V~~i~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~ 717 (915)
.+|...|.+++|++++.++++++.|+.|++|++.+ +..+..+.
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~ 879 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS-RLKVADCR 879 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT-TEEEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CCEEEECC
T ss_conf 79999978998899975895999995689723577478777607999827888899994798699998678-95653227
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCC----------------------------------------EEEE
Q ss_conf 578875899974899919999818981999994799----------------------------------------0578
Q 002495 718 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG----------------------------------------SCTR 757 (915)
Q Consensus 718 ~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~----------------------------------------~~~~ 757 (915)
+|...|.+++|+|++.. +++++.|+.|++|++... ....
T Consensus 880 ~h~~~v~~v~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 880 GHLSWVHGVMFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEE
T ss_conf 87665689999899998-99995897289887466520102113310368975998689981377624898447650897
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCC--
Q ss_conf 862681079991399989999849929999889960899951799984799992999999999499-09999878899--
Q 002495 758 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-- 834 (915)
Q Consensus 758 ~~~~~~~~i~~sp~~~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~-- 834 (915)
.....+.+++|++++..+++++.++.|++||+.++.....+.+|...|.+++|+|+++++++++.| .|++||+.++.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEE
T ss_conf 25672789999589977999869998899975787234430367771689999899998999869987999987999668
Q ss_pred -----------------------------------CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf -----------------------------------861388831499853999991799989999869809999889992
Q 002495 835 -----------------------------------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 879 (915)
Q Consensus 835 -----------------------------------~~~~i~~~~~~~~~i~~i~~spdg~~lisgs~dg~I~iwd~~~~~ 879 (915)
...++..+..|...+.+++|+|++.++++++.|+.|++||+.++.
T Consensus 1039 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1039 FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EEECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 98527873899999089958999788968998889886558874668848999998999989998499948998789850
Q ss_pred EE-EECCCCCCEEEEEEECCCCEEEEEECCCCEEECC
Q ss_conf 89-9815689869999937999999996698299909
Q 002495 880 TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 915 (915)
Q Consensus 880 ~~-~~~~h~~~V~~ia~spdg~~Lasgs~Dg~I~IWd 915 (915)
.+ .+.+|.+.|++++|+|++.+|++++.||.|++|+
T Consensus 1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 0125506877679999979999899982899799998
No 10
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=317.33 Aligned_cols=285 Identities=23% Similarity=0.409 Sum_probs=243.7
Q ss_pred CCEEEEEEECCCCCEEEEEECCCC-CEEEEEECCCCEEEEECCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 302445741599985999993899-99999978991999978998-----234673247986789999899998999838
Q 002495 624 SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSPSMPRLATSSF 697 (915)
Q Consensus 624 ~~~~~~~l~~H~~~V~~iafspdg-~~Latgs~Dg~I~iwd~~~~-----~~~~~l~~h~~~V~~i~fspdg~~Lasgs~ 697 (915)
.++....+++|.+.|+||+|++++ ++|++|+.|++|+||++.+. .....+.+|...|++++|++++++|++|+.
T Consensus 371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 46412110467740699986699888899980899489997568875555333242588884799999799999999808
Q ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEE------ECCCEEEEEECC
Q ss_conf 98099997789995478842578875899974899919999818981999994799057886------268107999139
Q 002495 698 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KGGTAQMRFQPH 771 (915)
Q Consensus 698 Dg~I~iwdl~~~~~~~~~~~~h~~~V~si~fsp~~~~ll~sgs~Dg~I~iwdi~~~~~~~~~------~~~~~~i~~sp~ 771 (915)
|++|+|||+.+ +..+..+.+|...|.+++|+|++.. |++++.|++|++||+......... ...+.++.|+++
T Consensus 451 Dg~v~vwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELRLWDLAA-GVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCCEEEEECCC-CCCEEEEECCCCCEEEEEEECCCCE-EEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEECC
T ss_conf 99289997999-9513688679998899999089998-999948897999978998540430377888786799999179
Q ss_pred C--CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC-EEEEEECCCCCCCCEEEEECCCCCC
Q ss_conf 9--989999849929999889960899951799984799992999999999499-0999987889986138883149985
Q 002495 772 L--GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 848 (915)
Q Consensus 772 ~--~~ll~~~~dg~I~i~D~~t~~~~~~l~~h~~~V~si~~spdg~~las~s~d-~I~iwdl~s~~~~~~i~~~~~~~~~ 848 (915)
+ ..+++++.|+.|++||+++.++...+.+|...|++++|+|++++|++++.| .|++||++++ .++..+.. ...
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~ 604 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSV 604 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSC
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC---CEEEEECC-CCC
T ss_conf 88655999968985999989999278998678888889999189898999958994999988999---56788338-994
Q ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEE-EECCC-------------------CCCEEEEEEECCCCEEEEEECC
Q ss_conf 399999179998999986980999988999289-98156-------------------8986999993799999999669
Q 002495 849 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHD 908 (915)
Q Consensus 849 i~~i~~spdg~~lisgs~dg~I~iwd~~~~~~~-~~~~h-------------------~~~V~~ia~spdg~~Lasgs~D 908 (915)
+.+++|+|++.+++++ .++.|++||+.++.++ .+..+ ...+++++|+|++.+|++|+.|
T Consensus 605 v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCC
T ss_conf 7899985998689997-699789998999987332002456532002456645677404775148986899989997589
Q ss_pred CCEEECC
Q ss_conf 8299909
Q 002495 909 KFVKLWK 915 (915)
Q Consensus 909 g~I~IWd 915 (915)
|.|+||+
T Consensus 684 g~i~iW~ 690 (694)
T 3dm0_A 684 GVIRVWG 690 (694)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
T ss_conf 8499985
Done!