Query 002496
Match_columns 915
No_of_seqs 1077 out of 4676
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 4E-148 9E-153 1126.0 73.7 793 3-796 1-794 (794)
2 KOG0292 Vesicle coat complex C 100.0 1.5E-84 3.2E-89 685.3 70.7 720 8-766 2-770 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 7.6E-69 1.6E-73 572.5 41.8 433 320-764 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 9.5E-49 2.1E-53 377.7 29.4 330 7-379 107-478 (480)
5 KOG1538 Uncharacterized conser 100.0 4.2E-45 9.1E-50 375.0 38.8 671 9-801 8-715 (1081)
6 KOG0318 WD40 repeat stress pro 100.0 5.2E-43 1.1E-47 352.0 51.5 459 7-489 51-599 (603)
7 KOG0271 Notchless-like WD40 re 100.0 6.6E-44 1.4E-48 344.3 28.9 324 49-415 107-478 (480)
8 KOG0291 WD40-repeat-containing 100.0 1.8E-40 4E-45 347.1 54.1 458 15-490 96-707 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 3E-43 6.6E-48 344.8 23.7 283 13-299 173-458 (459)
10 KOG0286 G-protein beta subunit 100.0 1.4E-41 3E-46 317.6 32.8 291 4-298 44-342 (343)
11 KOG0318 WD40 repeat stress pro 100.0 1.6E-38 3.5E-43 319.7 49.4 426 10-454 142-602 (603)
12 KOG0306 WD40-repeat-containing 100.0 6.5E-39 1.4E-43 335.3 43.7 434 16-490 66-661 (888)
13 KOG0319 WD40-repeat-containing 100.0 8E-38 1.7E-42 327.5 46.6 463 13-490 60-574 (775)
14 KOG0291 WD40-repeat-containing 100.0 1.2E-35 2.7E-40 311.0 61.7 429 13-490 53-547 (893)
15 KOG1524 WD40 repeat-containing 100.0 1.7E-37 3.8E-42 312.1 44.5 686 1-808 1-732 (737)
16 KOG0279 G protein beta subunit 100.0 1E-38 2.3E-43 296.7 32.0 294 1-298 1-310 (315)
17 KOG0276 Vesicle coat complex C 100.0 1.8E-36 3.9E-41 310.5 50.1 625 51-753 7-709 (794)
18 KOG0319 WD40-repeat-containing 100.0 2.7E-37 5.8E-42 323.5 41.9 473 6-490 95-616 (775)
19 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-39 5.8E-44 317.2 23.9 282 55-380 173-458 (459)
20 KOG0292 Vesicle coat complex C 100.0 5.9E-36 1.3E-40 317.9 50.1 663 6-750 42-780 (1202)
21 KOG2041 WD40 repeat protein [G 100.0 7.8E-37 1.7E-41 316.7 39.3 711 14-825 13-832 (1189)
22 KOG0273 Beta-transducin family 100.0 3.3E-37 7E-42 306.5 33.2 322 13-381 176-522 (524)
23 KOG0286 G-protein beta subunit 100.0 9.2E-37 2E-41 285.3 33.0 286 50-379 48-342 (343)
24 KOG0295 WD40 repeat-containing 100.0 1E-37 2.2E-42 300.4 25.7 294 4-299 97-404 (406)
25 KOG0273 Beta-transducin family 100.0 6.2E-37 1.3E-41 304.5 30.9 277 16-297 236-519 (524)
26 KOG0284 Polyadenylation factor 100.0 1.3E-37 2.7E-42 303.9 16.7 281 16-301 97-380 (464)
27 KOG0285 Pleiotropic regulator 100.0 4E-36 8.7E-41 288.1 25.9 290 4-299 140-437 (460)
28 KOG0279 G protein beta subunit 100.0 5.6E-35 1.2E-39 271.9 32.4 246 49-299 7-260 (315)
29 KOG0296 Angio-associated migra 100.0 1.5E-34 3.3E-39 278.8 29.7 287 8-298 57-395 (399)
30 KOG0315 G-protein beta subunit 100.0 3E-34 6.5E-39 262.2 29.9 268 28-301 11-288 (311)
31 KOG0265 U5 snRNP-specific prot 100.0 2.7E-34 5.9E-39 270.1 29.0 286 7-297 39-334 (338)
32 KOG0306 WD40-repeat-containing 100.0 7.5E-33 1.6E-37 290.1 42.4 411 26-490 33-619 (888)
33 KOG0263 Transcription initiati 100.0 5E-35 1.1E-39 310.5 26.5 242 15-260 378-650 (707)
34 cd00200 WD40 WD40 domain, foun 100.0 3.5E-33 7.5E-38 295.4 39.3 287 8-298 2-288 (289)
35 KOG0645 WD40 repeat protein [G 100.0 1.9E-33 4.1E-38 260.6 31.8 287 4-299 3-309 (312)
36 KOG1538 Uncharacterized conser 100.0 4.3E-33 9.3E-38 287.0 35.7 690 5-781 43-817 (1081)
37 KOG0284 Polyadenylation factor 100.0 2.8E-35 6.1E-40 287.5 16.9 282 56-381 95-379 (464)
38 KOG0315 G-protein beta subunit 100.0 6.3E-33 1.4E-37 253.6 28.3 266 9-279 34-308 (311)
39 KOG0266 WD40 repeat-containing 100.0 6.6E-33 1.4E-37 306.5 33.2 288 8-299 151-452 (456)
40 KOG0263 Transcription initiati 100.0 1.4E-33 3E-38 299.6 26.1 244 52-299 373-647 (707)
41 KOG0316 Conserved WD40 repeat- 100.0 1.1E-32 2.3E-37 249.9 25.9 283 8-297 10-296 (307)
42 KOG0293 WD40 repeat-containing 100.0 2.7E-33 5.9E-38 273.6 23.6 292 4-300 213-512 (519)
43 KOG2106 Uncharacterized conser 100.0 1.2E-30 2.7E-35 261.4 41.2 434 6-490 95-624 (626)
44 KOG0285 Pleiotropic regulator 100.0 2.5E-32 5.4E-37 262.1 25.8 247 49-301 143-389 (460)
45 KOG0282 mRNA splicing factor [ 100.0 1.2E-33 2.7E-38 282.4 17.6 288 6-298 205-502 (503)
46 KOG0645 WD40 repeat protein [G 100.0 4.3E-31 9.4E-36 245.0 32.7 291 49-381 6-310 (312)
47 KOG0278 Serine/threonine kinas 100.0 3.1E-33 6.7E-38 255.5 17.0 290 7-303 6-299 (334)
48 KOG2048 WD40 repeat protein [G 100.0 8.4E-29 1.8E-33 257.9 51.2 470 13-498 23-554 (691)
49 KOG0275 Conserved WD40 repeat- 100.0 3.3E-33 7.1E-38 264.2 16.7 283 13-299 211-507 (508)
50 KOG0265 U5 snRNP-specific prot 100.0 1.9E-31 4.2E-36 250.9 28.3 286 49-378 39-334 (338)
51 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3E-35 311.1 43.0 282 11-298 479-790 (793)
52 KOG0295 WD40 repeat-containing 100.0 3.8E-32 8.2E-37 262.1 22.3 289 48-379 99-403 (406)
53 KOG0281 Beta-TrCP (transducin 100.0 2E-33 4.4E-38 268.2 13.2 272 14-302 196-478 (499)
54 KOG0313 Microtubule binding pr 100.0 9.3E-31 2E-35 253.9 27.5 277 13-298 103-415 (423)
55 KOG0296 Angio-associated migra 100.0 6.6E-30 1.4E-34 246.9 32.1 325 48-417 55-397 (399)
56 KOG0310 Conserved WD40 repeat- 100.0 1.5E-30 3.1E-35 261.2 26.0 276 15-297 26-305 (487)
57 KOG1539 WD repeat protein [Gen 100.0 8.5E-28 1.8E-32 255.6 47.2 464 12-496 73-651 (910)
58 cd00200 WD40 WD40 domain, foun 100.0 2.6E-29 5.6E-34 265.7 36.1 285 51-379 3-288 (289)
59 KOG0316 Conserved WD40 repeat- 100.0 7.2E-30 1.6E-34 231.6 25.8 244 49-300 9-256 (307)
60 KOG1408 WD40 repeat protein [F 100.0 4.2E-29 9.1E-34 259.8 34.3 439 9-493 72-714 (1080)
61 KOG0266 WD40 repeat-containing 100.0 2.3E-29 4.9E-34 278.4 33.0 281 57-380 159-452 (456)
62 KOG0643 Translation initiation 100.0 8.4E-30 1.8E-34 235.7 23.8 284 10-298 5-314 (327)
63 KOG1407 WD40 repeat protein [F 100.0 2.6E-29 5.5E-34 231.8 26.6 279 8-293 13-294 (313)
64 PLN00181 protein SPA1-RELATED; 100.0 3E-28 6.4E-33 291.1 41.8 259 36-300 457-737 (793)
65 KOG1063 RNA polymerase II elon 100.0 9.3E-28 2E-32 250.2 39.6 477 5-490 44-696 (764)
66 KOG0288 WD40 repeat protein Ti 100.0 1.7E-30 3.8E-35 254.6 17.4 285 6-298 166-458 (459)
67 KOG1446 Histone H3 (Lys4) meth 100.0 7.5E-28 1.6E-32 229.7 34.6 290 4-301 3-303 (311)
68 KOG0305 Anaphase promoting com 100.0 9.5E-29 2.1E-33 259.4 28.2 273 20-299 182-459 (484)
69 KOG0277 Peroxisomal targeting 100.0 5.9E-29 1.3E-33 228.5 23.1 279 19-299 12-307 (311)
70 KOG2041 WD40 repeat protein [G 100.0 3.6E-28 7.8E-33 252.8 31.2 714 3-781 59-923 (1189)
71 KOG3617 WD40 and TPR repeat-co 100.0 8.9E-28 1.9E-32 254.1 34.0 776 1-828 1-944 (1416)
72 KOG0643 Translation initiation 100.0 5.8E-28 1.3E-32 223.6 28.5 297 52-380 5-315 (327)
73 KOG0268 Sof1-like rRNA process 100.0 8.3E-30 1.8E-34 245.6 16.8 285 7-301 58-345 (433)
74 KOG0772 Uncharacterized conser 100.0 1.2E-28 2.5E-33 248.0 23.6 288 8-298 160-484 (641)
75 KOG0299 U3 snoRNP-associated p 100.0 3.5E-28 7.5E-33 242.2 25.1 276 8-290 135-444 (479)
76 KOG0282 mRNA splicing factor [ 100.0 4.3E-29 9.3E-34 250.1 18.6 249 47-299 204-460 (503)
77 KOG0281 Beta-TrCP (transducin 100.0 2E-29 4.2E-34 241.0 14.8 228 56-299 196-426 (499)
78 KOG0293 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 241.0 19.2 253 4-260 258-514 (519)
79 KOG1539 WD repeat protein [Gen 100.0 6.3E-26 1.4E-30 241.5 40.8 388 18-453 162-647 (910)
80 KOG2106 Uncharacterized conser 100.0 2E-24 4.3E-29 217.2 48.8 413 20-490 70-518 (626)
81 KOG0973 Histone transcription 100.0 1.5E-27 3.3E-32 262.8 28.5 282 13-298 11-352 (942)
82 KOG1407 WD40 repeat protein [F 100.0 3.6E-27 7.9E-32 217.7 25.5 276 51-373 14-292 (313)
83 KOG0289 mRNA splicing factor [ 100.0 4.6E-27 1E-31 231.9 27.0 279 16-297 220-502 (506)
84 KOG0275 Conserved WD40 repeat- 100.0 1.6E-28 3.6E-33 232.5 16.1 279 56-379 212-506 (508)
85 KOG0294 WD40 repeat-containing 100.0 4.9E-27 1.1E-31 222.8 25.5 247 5-261 33-283 (362)
86 PTZ00421 coronin; Provisional 100.0 3.3E-26 7.1E-31 251.2 35.3 265 14-282 19-314 (493)
87 KOG0301 Phospholipase A2-activ 100.0 3.4E-27 7.3E-32 246.3 25.7 282 4-301 3-288 (745)
88 KOG0308 Conserved WD40 repeat- 100.0 6.7E-28 1.4E-32 249.5 20.1 276 20-298 29-324 (735)
89 KOG0278 Serine/threonine kinas 100.0 8.5E-28 1.9E-32 220.0 18.5 286 50-382 7-297 (334)
90 KOG2048 WD40 repeat protein [G 100.0 3.3E-24 7.2E-29 223.8 47.2 416 55-490 23-503 (691)
91 KOG0277 Peroxisomal targeting 100.0 9.3E-28 2E-32 220.6 18.2 242 15-258 60-308 (311)
92 KOG0640 mRNA cleavage stimulat 100.0 4.4E-27 9.5E-32 221.9 22.1 286 10-299 107-424 (430)
93 KOG1408 WD40 repeat protein [F 100.0 3.7E-25 8E-30 230.6 38.0 539 17-593 39-717 (1080)
94 KOG0274 Cdc4 and related F-box 100.0 1.5E-26 3.3E-31 253.6 29.4 271 14-299 207-480 (537)
95 KOG0647 mRNA export protein (c 100.0 2.6E-26 5.7E-31 216.6 26.2 269 13-289 25-311 (347)
96 KOG1036 Mitotic spindle checkp 100.0 4.7E-26 1E-30 216.1 28.0 268 14-291 12-294 (323)
97 KOG0310 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 234.6 23.9 239 56-298 25-265 (487)
98 KOG0283 WD40 repeat-containing 100.0 2.3E-27 5E-32 254.9 21.5 285 9-303 260-578 (712)
99 KOG0305 Anaphase promoting com 100.0 5.6E-27 1.2E-31 246.1 23.9 244 14-261 216-463 (484)
100 KOG0300 WD40 repeat-containing 100.0 8.8E-27 1.9E-31 220.3 21.4 289 4-298 137-473 (481)
101 KOG1446 Histone H3 (Lys4) meth 100.0 7E-25 1.5E-29 209.5 34.0 246 48-299 5-260 (311)
102 PTZ00420 coronin; Provisional 99.9 6.3E-25 1.4E-29 241.5 36.4 245 33-283 50-318 (568)
103 KOG0308 Conserved WD40 repeat- 99.9 7.7E-27 1.7E-31 241.7 19.9 229 67-297 35-281 (735)
104 KOG0641 WD40 repeat protein [G 99.9 1.3E-24 2.8E-29 195.9 31.2 280 14-299 31-347 (350)
105 PTZ00421 coronin; Provisional 99.9 3.4E-25 7.3E-30 243.3 32.3 227 10-240 70-314 (493)
106 KOG0274 Cdc4 and related F-box 99.9 8.8E-26 1.9E-30 247.6 27.4 248 7-267 241-490 (537)
107 KOG1063 RNA polymerase II elon 99.9 1.2E-23 2.7E-28 219.7 41.8 454 20-492 19-647 (764)
108 KOG0973 Histone transcription 99.9 1.3E-25 2.8E-30 247.7 28.4 284 56-382 12-355 (942)
109 KOG0313 Microtubule binding pr 99.9 6.6E-26 1.4E-30 220.3 22.6 249 5-259 134-418 (423)
110 KOG1274 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 213.8 55.3 277 12-298 10-297 (933)
111 KOG0288 WD40 repeat protein Ti 99.9 1.6E-26 3.4E-31 227.0 15.8 285 49-379 167-458 (459)
112 KOG0268 Sof1-like rRNA process 99.9 1.6E-26 3.4E-31 223.1 15.2 287 49-384 58-347 (433)
113 KOG0299 U3 snoRNP-associated p 99.9 4.9E-25 1.1E-29 219.9 25.7 244 50-299 135-408 (479)
114 KOG0772 Uncharacterized conser 99.9 4.3E-25 9.3E-30 222.4 24.8 238 51-291 161-429 (641)
115 KOG0289 mRNA splicing factor [ 99.9 9E-25 2E-29 215.8 25.8 235 59-297 221-458 (506)
116 KOG0640 mRNA cleavage stimulat 99.9 2.5E-25 5.4E-30 210.1 20.9 289 50-381 105-425 (430)
117 KOG0647 mRNA export protein (c 99.9 1.8E-24 3.8E-29 204.3 26.4 270 55-372 25-312 (347)
118 PTZ00420 coronin; Provisional 99.9 1.3E-23 2.8E-28 231.2 36.8 223 75-300 50-292 (568)
119 KOG0264 Nucleosome remodeling 99.9 4.5E-25 9.7E-30 220.6 22.4 246 13-259 122-404 (422)
120 KOG2055 WD40 repeat protein [G 99.9 1.4E-24 3.1E-29 216.3 25.3 279 15-299 213-510 (514)
121 KOG0639 Transducin-like enhanc 99.9 1E-24 2.2E-29 218.7 20.3 277 13-297 417-700 (705)
122 KOG1332 Vesicle coat complex C 99.9 7.7E-25 1.7E-29 200.4 17.7 250 95-381 7-285 (299)
123 KOG0300 WD40 repeat-containing 99.9 3.2E-24 7E-29 203.0 21.6 246 48-298 139-425 (481)
124 KOG1332 Vesicle coat complex C 99.9 1.4E-24 3.1E-29 198.7 17.8 252 8-259 4-286 (299)
125 KOG0641 WD40 repeat protein [G 99.9 7E-23 1.5E-27 184.8 27.6 245 10-259 84-349 (350)
126 KOG2096 WD40 repeat protein [G 99.9 4.1E-23 9E-28 196.0 26.8 282 8-295 79-397 (420)
127 KOG0283 WD40 repeat-containing 99.9 6.9E-24 1.5E-28 228.3 23.6 250 92-384 259-578 (712)
128 KOG0294 WD40 repeat-containing 99.9 9.4E-23 2E-27 193.8 27.9 263 30-302 4-282 (362)
129 KOG0646 WD40 repeat protein [G 99.9 6.4E-24 1.4E-28 212.4 20.9 252 29-283 52-331 (476)
130 KOG2096 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 194.2 26.2 288 94-415 81-399 (420)
131 KOG0264 Nucleosome remodeling 99.9 1.8E-23 3.9E-28 209.2 22.3 244 55-299 122-402 (422)
132 KOG0301 Phospholipase A2-activ 99.9 6.2E-23 1.3E-27 214.7 27.1 282 48-384 5-290 (745)
133 KOG1036 Mitotic spindle checkp 99.9 1.5E-22 3.2E-27 192.5 26.8 269 56-374 12-295 (323)
134 KOG0650 WD40 repeat nucleolar 99.9 1.9E-23 4E-28 214.5 22.1 286 7-298 392-732 (733)
135 KOG4328 WD40 protein [Function 99.9 2.7E-23 5.9E-28 207.1 22.6 289 8-299 179-493 (498)
136 KOG1273 WD40 repeat protein [G 99.9 7.3E-23 1.6E-27 194.2 23.6 278 18-302 26-323 (405)
137 KOG4283 Transcription-coupled 99.9 1.3E-22 2.7E-27 190.7 24.7 283 12-300 40-364 (397)
138 KOG0646 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 202.5 24.2 260 36-299 17-305 (476)
139 KOG2055 WD40 repeat protein [G 99.9 2.3E-22 4.9E-27 200.7 25.2 286 56-381 212-511 (514)
140 KOG0267 Microtubule severing p 99.9 1.6E-24 3.5E-29 227.2 9.4 259 27-295 4-262 (825)
141 KOG1445 Tumor-specific antigen 99.9 6.1E-22 1.3E-26 204.1 27.0 133 9-141 73-212 (1012)
142 KOG0267 Microtubule severing p 99.9 3.7E-24 8.1E-29 224.5 9.4 238 9-250 22-259 (825)
143 KOG0639 Transducin-like enhanc 99.9 1.2E-22 2.5E-27 204.0 19.5 274 97-416 417-702 (705)
144 KOG0269 WD40 repeat-containing 99.9 3.4E-23 7.4E-28 219.2 15.3 242 18-261 90-342 (839)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.2E-25 199.5 36.6 266 28-302 2-280 (300)
146 KOG0269 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 214.4 19.1 277 16-297 40-336 (839)
147 KOG1273 WD40 repeat protein [G 99.9 2.2E-21 4.9E-26 184.2 24.2 235 60-298 26-277 (405)
148 KOG1524 WD40 repeat-containing 99.9 6.9E-20 1.5E-24 185.8 36.2 620 56-779 13-691 (737)
149 KOG2445 Nuclear pore complex c 99.9 1.1E-20 2.3E-25 179.4 25.9 252 7-259 5-318 (361)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.7E-20 1E-24 196.6 34.6 264 9-281 25-300 (300)
151 KOG0270 WD40 repeat-containing 99.9 8.9E-22 1.9E-26 195.9 18.8 245 18-264 176-454 (463)
152 KOG1274 WD40 repeat protein [G 99.9 1.7E-20 3.6E-25 203.0 28.7 240 55-300 11-261 (933)
153 KOG0302 Ribosome Assembly prot 99.9 4.6E-21 9.9E-26 186.6 21.7 247 7-256 143-435 (440)
154 KOG0302 Ribosome Assembly prot 99.9 4.5E-21 9.8E-26 186.6 20.7 241 55-297 149-435 (440)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.5E-21 7.6E-26 193.3 20.5 262 17-283 36-305 (673)
156 KOG2445 Nuclear pore complex c 99.9 3.5E-20 7.5E-25 175.9 26.0 246 54-300 10-317 (361)
157 KOG4328 WD40 protein [Function 99.9 1.9E-20 4E-25 187.1 24.8 253 42-297 171-446 (498)
158 KOG0270 WD40 repeat-containing 99.9 1E-20 2.2E-25 188.5 22.4 275 20-299 130-447 (463)
159 KOG2919 Guanine nucleotide-bin 99.9 1.8E-20 3.9E-25 178.7 22.8 272 18-292 52-361 (406)
160 KOG1034 Transcriptional repres 99.9 2.3E-20 5E-25 178.6 22.2 282 10-298 33-380 (385)
161 KOG0650 WD40 repeat nucleolar 99.9 3.4E-20 7.3E-25 190.8 23.9 244 50-298 393-677 (733)
162 KOG1963 WD40 repeat protein [G 99.9 5.1E-18 1.1E-22 183.9 41.7 407 11-456 12-540 (792)
163 KOG0307 Vesicle coat complex C 99.9 7.5E-22 1.6E-26 219.0 12.6 280 17-298 8-324 (1049)
164 KOG0321 WD40 repeat-containing 99.9 3.5E-20 7.5E-25 192.3 22.9 277 20-300 54-390 (720)
165 KOG1009 Chromatin assembly com 99.9 5.7E-19 1.2E-23 174.1 27.4 317 142-488 13-367 (434)
166 KOG0642 Cell-cycle nuclear pro 99.8 9.9E-21 2.1E-25 194.2 14.9 264 5-270 284-572 (577)
167 KOG4378 Nuclear protein COP1 [ 99.8 7.2E-20 1.6E-24 184.0 20.6 263 32-299 7-278 (673)
168 KOG4497 Uncharacterized conser 99.8 1.4E-19 3E-24 173.0 21.1 383 20-489 13-428 (447)
169 COG2319 FOG: WD40 repeat [Gene 99.8 6.6E-17 1.4E-21 182.2 47.3 285 10-299 60-357 (466)
170 KOG1963 WD40 repeat protein [G 99.8 1.3E-17 2.9E-22 180.7 38.8 417 6-461 48-590 (792)
171 KOG1188 WD40 repeat protein [G 99.8 1.1E-19 2.5E-24 175.0 20.2 271 28-300 41-345 (376)
172 KOG3617 WD40 and TPR repeat-co 99.8 5.9E-19 1.3E-23 187.9 27.4 110 666-783 910-1022(1416)
173 KOG0307 Vesicle coat complex C 99.8 1.3E-20 2.9E-25 209.2 13.4 246 15-262 64-330 (1049)
174 KOG1009 Chromatin assembly com 99.8 8.1E-19 1.8E-23 173.0 23.1 278 15-297 13-368 (434)
175 KOG4283 Transcription-coupled 99.8 8.9E-19 1.9E-23 165.0 22.2 244 12-258 98-364 (397)
176 KOG1034 Transcriptional repres 99.8 2.8E-19 6E-24 171.3 18.5 244 13-259 87-383 (385)
177 KOG1007 WD repeat protein TSSC 99.8 1.1E-18 2.4E-23 164.1 20.7 268 27-297 26-357 (370)
178 KOG0644 Uncharacterized conser 99.8 2E-20 4.3E-25 199.3 10.1 281 4-298 179-465 (1113)
179 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.5E-23 163.9 20.0 250 7-259 55-361 (370)
180 KOG1517 Guanine nucleotide bin 99.8 4.2E-18 9.1E-23 186.3 25.8 286 11-299 1060-1379(1387)
181 KOG4227 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 163.1 23.6 294 7-304 48-390 (609)
182 KOG0321 WD40 repeat-containing 99.8 3E-18 6.5E-23 178.1 20.6 251 9-262 94-394 (720)
183 KOG1445 Tumor-specific antigen 99.8 3.3E-18 7.1E-23 176.9 20.0 148 144-292 629-785 (1012)
184 KOG0322 G-protein beta subunit 99.8 1.1E-18 2.3E-23 162.2 14.4 286 6-299 5-321 (323)
185 KOG1587 Cytoplasmic dynein int 99.8 2.1E-17 4.5E-22 180.0 26.5 260 37-298 222-513 (555)
186 KOG0649 WD40 repeat protein [G 99.8 2.5E-16 5.5E-21 144.7 27.5 268 16-297 11-312 (325)
187 KOG0642 Cell-cycle nuclear pro 99.8 2.6E-18 5.7E-23 176.5 16.3 245 52-299 289-559 (577)
188 KOG0290 Conserved WD40 repeat- 99.8 7.5E-17 1.6E-21 152.1 23.9 273 17-293 46-358 (364)
189 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-15 2.5E-20 172.0 37.1 290 6-301 146-442 (466)
190 KOG2919 Guanine nucleotide-bin 99.8 3.4E-17 7.4E-22 156.6 19.4 233 15-250 104-361 (406)
191 KOG1920 IkappaB kinase complex 99.8 1.4E-14 3E-19 162.6 42.8 276 14-297 17-361 (1265)
192 PF04762 IKI3: IKI3 family; I 99.8 4.3E-12 9.4E-17 149.9 65.9 545 16-607 22-713 (928)
193 KOG0649 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 142.7 24.8 227 59-297 12-270 (325)
194 KOG1523 Actin-related protein 99.7 1.5E-16 3.2E-21 152.5 20.8 243 52-297 5-275 (361)
195 KOG4497 Uncharacterized conser 99.7 2.4E-16 5.3E-21 151.0 22.1 308 15-378 48-427 (447)
196 KOG1587 Cytoplasmic dynein int 99.7 1.5E-16 3.3E-21 173.3 22.7 243 15-259 242-516 (555)
197 KOG1334 WD40 repeat protein [G 99.7 2.3E-17 5E-22 166.4 14.6 296 4-301 131-466 (559)
198 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 3E-21 154.0 18.5 197 70-268 41-251 (376)
199 KOG1912 WD40 repeat protein [G 99.7 4.8E-14 1E-18 150.1 38.9 367 3-398 43-572 (1062)
200 KOG0303 Actin-binding protein 99.7 3E-16 6.6E-21 154.1 20.6 227 10-240 76-320 (472)
201 KOG3616 Selective LIM binding 99.7 8.8E-16 1.9E-20 162.0 24.9 216 529-794 382-617 (1636)
202 KOG1272 WD40-repeat-containing 99.7 2.9E-17 6.3E-22 164.6 11.0 270 17-297 131-405 (545)
203 KOG1523 Actin-related protein 99.7 6.8E-16 1.5E-20 148.0 19.5 234 13-250 8-269 (361)
204 KOG0290 Conserved WD40 repeat- 99.7 8.7E-16 1.9E-20 144.9 19.5 239 12-255 93-361 (364)
205 KOG4227 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 147.5 22.0 245 51-299 50-320 (609)
206 KOG1310 WD40 repeat protein [G 99.7 3.1E-16 6.8E-21 160.0 16.1 244 4-266 39-310 (758)
207 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.7E-19 154.2 31.1 259 33-298 8-301 (330)
208 PRK01742 tolB translocation pr 99.7 1.6E-15 3.5E-20 167.8 22.4 235 36-282 183-426 (429)
209 KOG0303 Actin-binding protein 99.7 1.9E-15 4.2E-20 148.6 19.1 202 93-298 75-291 (472)
210 KOG2110 Uncharacterized conser 99.7 1.3E-13 2.8E-18 135.2 31.4 236 14-260 4-249 (391)
211 KOG2110 Uncharacterized conser 99.7 2.7E-14 5.8E-19 140.0 26.2 232 58-298 6-245 (391)
212 KOG2111 Uncharacterized conser 99.7 1.4E-13 3E-18 132.4 30.2 235 59-302 7-257 (346)
213 KOG2111 Uncharacterized conser 99.7 1.8E-13 4E-18 131.5 30.4 237 17-260 7-257 (346)
214 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.2E-19 138.9 25.2 253 16-294 99-368 (445)
215 KOG1517 Guanine nucleotide bin 99.7 1.1E-14 2.3E-19 160.1 24.0 288 58-382 1065-1381(1387)
216 PRK11028 6-phosphogluconolacto 99.7 1.6E-13 3.5E-18 147.5 33.2 266 73-381 6-303 (330)
217 PF02239 Cytochrom_D1: Cytochr 99.6 2.8E-13 6.1E-18 144.5 31.4 287 8-297 29-343 (369)
218 KOG0322 G-protein beta subunit 99.6 4.9E-15 1.1E-19 138.1 15.3 286 50-381 7-322 (323)
219 PRK01742 tolB translocation pr 99.6 8.8E-15 1.9E-19 162.0 20.3 222 8-240 196-426 (429)
220 KOG0644 Uncharacterized conser 99.6 6.6E-16 1.4E-20 165.2 9.2 238 48-299 181-424 (1113)
221 PF02239 Cytochrom_D1: Cytochr 99.6 1.5E-12 3.3E-17 138.9 33.9 255 28-289 6-286 (369)
222 KOG0771 Prolactin regulatory e 99.6 1E-14 2.2E-19 145.8 15.2 194 61-259 148-354 (398)
223 KOG1272 WD40-repeat-containing 99.6 2E-15 4.2E-20 151.7 9.7 231 57-298 129-359 (545)
224 KOG3881 Uncharacterized conser 99.6 1.4E-13 3E-18 136.0 21.5 260 13-282 53-342 (412)
225 KOG1240 Protein kinase contain 99.6 2.1E-13 4.6E-18 152.6 25.6 256 4-260 1037-1335(1431)
226 KOG1240 Protein kinase contain 99.6 3.6E-13 7.8E-18 150.9 27.0 262 42-306 1034-1339(1431)
227 KOG0771 Prolactin regulatory e 99.6 1.2E-14 2.7E-19 145.1 14.0 195 19-217 148-354 (398)
228 KOG2139 WD40 repeat protein [G 99.6 2.9E-13 6.3E-18 132.1 22.6 190 100-295 99-304 (445)
229 KOG1310 WD40 repeat protein [G 99.6 1.2E-14 2.7E-19 148.6 13.6 168 49-217 42-231 (758)
230 KOG1354 Serine/threonine prote 99.6 2.7E-13 6E-18 131.3 21.2 245 14-262 24-362 (433)
231 PRK03629 tolB translocation pr 99.6 1.2E-12 2.5E-17 144.6 29.4 235 37-282 179-428 (429)
232 KOG2321 WD40 repeat protein [G 99.6 4.3E-13 9.4E-18 138.5 23.7 276 13-297 49-339 (703)
233 PRK04922 tolB translocation pr 99.6 1.3E-12 2.8E-17 145.2 28.0 234 37-281 184-432 (433)
234 KOG1334 WD40 repeat protein [G 99.6 3.2E-14 6.8E-19 144.0 13.1 253 49-302 134-425 (559)
235 PRK02889 tolB translocation pr 99.5 7.5E-13 1.6E-17 146.4 24.6 235 37-282 176-425 (427)
236 COG5354 Uncharacterized protei 99.5 4.9E-12 1.1E-16 129.3 28.0 273 9-292 26-336 (561)
237 PF04762 IKI3: IKI3 family; I 99.5 2.3E-08 4.9E-13 118.8 62.8 234 58-299 22-331 (928)
238 KOG2315 Predicted translation 99.5 5.3E-12 1.2E-16 130.8 28.0 271 15-297 34-380 (566)
239 PRK03629 tolB translocation pr 99.5 1.2E-12 2.5E-17 144.7 24.9 222 9-240 192-428 (429)
240 PRK05137 tolB translocation pr 99.5 4E-12 8.7E-17 141.4 29.4 234 37-282 182-433 (435)
241 KOG2314 Translation initiation 99.5 6.9E-12 1.5E-16 129.2 27.2 337 18-404 213-597 (698)
242 KOG2315 Predicted translation 99.5 4.2E-11 9.1E-16 124.3 32.9 322 36-408 10-373 (566)
243 KOG1912 WD40 repeat protein [G 99.5 8.5E-12 1.8E-16 133.3 27.7 442 16-472 16-572 (1062)
244 PRK02889 tolB translocation pr 99.5 1.5E-12 3.2E-17 144.1 22.0 222 9-240 189-425 (427)
245 COG5354 Uncharacterized protei 99.5 6.5E-11 1.4E-15 121.3 31.1 243 40-290 15-293 (561)
246 KOG2394 WD40 protein DMR-N9 [G 99.5 4.6E-13 9.9E-18 137.3 15.4 137 15-152 219-384 (636)
247 KOG2394 WD40 protein DMR-N9 [G 99.5 1.2E-12 2.5E-17 134.4 18.2 245 17-281 125-384 (636)
248 PRK04922 tolB translocation pr 99.5 2.5E-12 5.5E-17 142.8 22.4 222 8-239 196-432 (433)
249 KOG1409 Uncharacterized conser 99.5 2E-12 4.3E-17 125.6 18.3 213 3-218 12-271 (404)
250 PRK05137 tolB translocation pr 99.5 7.4E-12 1.6E-16 139.3 25.2 222 8-240 194-433 (435)
251 KOG3881 Uncharacterized conser 99.5 3.2E-12 6.9E-17 126.5 19.4 221 13-240 103-342 (412)
252 KOG2321 WD40 repeat protein [G 99.4 3.7E-11 8.1E-16 124.4 24.8 234 56-298 50-299 (703)
253 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4E-16 118.3 20.9 153 18-178 8-183 (194)
254 KOG0974 WD-repeat protein WDR6 99.4 5.3E-10 1.1E-14 124.6 33.9 196 17-218 89-289 (967)
255 COG4946 Uncharacterized protei 99.4 1E-08 2.2E-13 104.3 39.8 181 108-296 275-468 (668)
256 KOG2314 Translation initiation 99.4 1.6E-10 3.5E-15 119.3 27.2 306 60-408 213-556 (698)
257 PF08662 eIF2A: Eukaryotic tra 99.4 3.4E-11 7.3E-16 116.5 20.9 156 103-267 9-186 (194)
258 TIGR02800 propeller_TolB tol-p 99.4 1.4E-10 3E-15 129.6 28.7 232 37-279 170-416 (417)
259 PRK00178 tolB translocation pr 99.4 2E-10 4.3E-15 128.3 29.1 234 38-282 180-428 (430)
260 KOG1354 Serine/threonine prote 99.4 1E-10 2.3E-15 113.7 22.3 239 57-299 25-357 (433)
261 PRK04792 tolB translocation pr 99.4 2.7E-10 5.9E-15 126.4 27.6 234 38-282 199-447 (448)
262 KOG1920 IkappaB kinase complex 99.4 4.2E-08 9.1E-13 111.6 44.4 194 99-299 68-320 (1265)
263 PF10282 Lactonase: Lactonase, 99.3 1.5E-08 3.1E-13 109.0 37.5 266 30-297 2-318 (345)
264 PF10282 Lactonase: Lactonase, 99.3 9.5E-09 2.1E-13 110.4 35.7 263 15-279 36-345 (345)
265 TIGR02800 propeller_TolB tol-p 99.3 2.7E-10 5.8E-15 127.3 24.7 219 9-237 183-416 (417)
266 PRK00178 tolB translocation pr 99.3 3.1E-10 6.6E-15 126.8 25.0 222 9-240 192-428 (430)
267 PRK01029 tolB translocation pr 99.3 8.4E-10 1.8E-14 121.4 27.9 240 37-283 165-426 (428)
268 PRK01029 tolB translocation pr 99.3 6.3E-10 1.4E-14 122.3 26.1 227 9-241 178-426 (428)
269 KOG0280 Uncharacterized conser 99.3 3.9E-10 8.5E-15 107.6 20.5 250 36-288 45-318 (339)
270 KOG4547 WD40 repeat-containing 99.3 6.1E-10 1.3E-14 116.8 23.9 189 24-217 2-220 (541)
271 PRK04792 tolB translocation pr 99.3 4.6E-10 1E-14 124.5 23.7 221 10-239 212-446 (448)
272 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.4E-08 9.5E-13 102.0 35.6 261 26-297 11-326 (352)
273 KOG0974 WD-repeat protein WDR6 99.3 2E-10 4.4E-15 127.8 19.2 267 16-299 8-286 (967)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.7E-08 3.7E-13 105.0 32.2 238 23-267 53-338 (352)
275 KOG0280 Uncharacterized conser 99.2 8.9E-10 1.9E-14 105.3 19.7 240 16-257 70-331 (339)
276 KOG3616 Selective LIM binding 99.2 9.6E-10 2.1E-14 117.2 22.0 137 646-782 564-720 (1636)
277 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 113.2 23.7 187 67-258 3-219 (541)
278 KOG2114 Vacuolar assembly/sort 99.2 3E-08 6.5E-13 108.6 33.0 464 193-782 31-536 (933)
279 TIGR03300 assembly_YfgL outer 99.2 1.3E-08 2.7E-13 111.8 31.0 255 27-298 65-335 (377)
280 KOG1064 RAVE (regulator of V-A 99.2 7.5E-11 1.6E-15 137.1 12.7 199 12-226 2205-2407(2439)
281 TIGR03300 assembly_YfgL outer 99.2 1.3E-08 2.8E-13 111.7 29.4 256 26-297 104-375 (377)
282 KOG1409 Uncharacterized conser 99.2 3.2E-09 7E-14 103.7 19.1 246 48-299 15-268 (404)
283 KOG1064 RAVE (regulator of V-A 99.1 3.6E-10 7.8E-15 131.6 13.6 196 56-268 2207-2407(2439)
284 PLN02919 haloacid dehalogenase 99.1 8.9E-08 1.9E-12 116.2 33.8 238 19-263 571-892 (1057)
285 KOG4532 WD40-like repeat conta 99.0 4.8E-08 1E-12 92.3 21.2 238 20-259 72-331 (344)
286 COG2706 3-carboxymuconate cycl 99.0 2E-06 4.3E-11 85.9 33.1 211 36-248 15-262 (346)
287 COG4946 Uncharacterized protei 99.0 2.1E-07 4.6E-12 94.8 26.4 146 13-162 357-507 (668)
288 COG5170 CDC55 Serine/threonine 99.0 2.9E-08 6.4E-13 95.5 19.3 238 57-298 26-364 (460)
289 COG5170 CDC55 Serine/threonine 99.0 9.2E-09 2E-13 98.8 15.8 240 14-257 25-365 (460)
290 KOG0309 Conserved WD40 repeat- 99.0 3.2E-09 6.9E-14 113.4 13.2 282 15-299 24-337 (1081)
291 PF15492 Nbas_N: Neuroblastoma 99.0 7.7E-07 1.7E-11 86.1 27.6 235 20-268 2-268 (282)
292 PRK04043 tolB translocation pr 99.0 1E-07 2.2E-12 104.1 24.9 190 17-217 189-400 (419)
293 COG2706 3-carboxymuconate cycl 99.0 2.2E-06 4.8E-11 85.6 31.6 251 11-265 35-329 (346)
294 KOG3914 WD repeat protein WDR4 99.0 8.3E-09 1.8E-13 103.4 14.7 162 17-182 64-232 (390)
295 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.9E-06 6.4E-11 80.2 30.4 191 27-226 23-215 (354)
296 PRK04043 tolB translocation pr 99.0 4.4E-07 9.5E-12 99.2 29.5 210 37-259 169-400 (419)
297 KOG4190 Uncharacterized conser 99.0 2.2E-09 4.9E-14 110.5 10.0 280 9-297 729-1032(1034)
298 PLN02919 haloacid dehalogenase 98.9 8.9E-07 1.9E-11 107.7 33.0 234 61-299 571-886 (1057)
299 KOG4190 Uncharacterized conser 98.9 2.3E-09 4.9E-14 110.5 9.0 239 50-297 728-984 (1034)
300 PF08450 SGL: SMP-30/Gluconola 98.9 2.4E-06 5.3E-11 87.3 31.6 218 62-290 4-244 (246)
301 KOG1832 HIV-1 Vpr-binding prot 98.9 6.3E-10 1.4E-14 120.8 5.0 266 4-290 1090-1378(1516)
302 KOG4714 Nucleoporin [Nuclear s 98.9 7.4E-09 1.6E-13 97.3 10.7 161 14-174 88-255 (319)
303 PF13360 PQQ_2: PQQ-like domai 98.9 5.7E-07 1.2E-11 91.8 25.8 221 36-266 2-237 (238)
304 KOG4532 WD40-like repeat conta 98.9 3.3E-07 7.1E-12 86.8 20.7 226 34-270 49-293 (344)
305 PRK11138 outer membrane biogen 98.9 1.6E-06 3.5E-11 95.4 30.1 259 26-297 68-349 (394)
306 PF08450 SGL: SMP-30/Gluconola 98.9 4.2E-06 9.1E-11 85.6 30.7 217 20-248 4-244 (246)
307 KOG0309 Conserved WD40 repeat- 98.9 1.5E-08 3.2E-13 108.4 12.6 243 18-260 70-340 (1081)
308 PRK11138 outer membrane biogen 98.8 1.8E-06 3.9E-11 95.0 27.8 258 27-297 120-390 (394)
309 KOG1832 HIV-1 Vpr-binding prot 98.8 2.3E-09 5E-14 116.5 4.2 220 48-287 1092-1317(1516)
310 PF07433 DUF1513: Protein of u 98.8 5.6E-06 1.2E-10 83.1 27.6 231 16-254 5-280 (305)
311 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.8E-05 6E-10 73.9 30.0 187 111-317 23-213 (354)
312 PF04053 Coatomer_WDAD: Coatom 98.8 5E-06 1.1E-10 90.4 29.0 92 627-734 329-439 (443)
313 KOG3914 WD repeat protein WDR4 98.8 5.1E-08 1.1E-12 97.9 12.4 161 59-226 64-232 (390)
314 KOG4714 Nucleoporin [Nuclear s 98.8 1.1E-07 2.3E-12 89.7 13.4 197 18-218 39-255 (319)
315 KOG0882 Cyclophilin-related pe 98.8 1.1E-07 2.3E-12 96.5 13.9 250 14-269 8-315 (558)
316 KOG1275 PAB-dependent poly(A) 98.7 3.5E-07 7.7E-12 100.8 17.8 182 68-257 146-340 (1118)
317 PF07433 DUF1513: Protein of u 98.7 2.5E-05 5.5E-10 78.5 28.7 223 59-290 6-275 (305)
318 PF13360 PQQ_2: PQQ-like domai 98.7 1.9E-05 4.1E-10 80.5 27.7 211 77-298 1-227 (238)
319 KOG3621 WD40 repeat-containing 98.7 4.9E-06 1.1E-10 89.9 23.3 205 14-224 32-252 (726)
320 KOG1275 PAB-dependent poly(A) 98.6 6.8E-07 1.5E-11 98.6 16.1 182 27-216 147-341 (1118)
321 KOG2066 Vacuolar assembly/sort 98.6 1.2E-06 2.7E-11 95.7 17.1 182 15-217 39-233 (846)
322 KOG2114 Vacuolar assembly/sort 98.6 6.9E-06 1.5E-10 90.7 21.9 201 21-226 29-252 (933)
323 PF00930 DPPIV_N: Dipeptidyl p 98.6 4.3E-05 9.3E-10 82.5 28.3 263 24-291 1-347 (353)
324 PF15492 Nbas_N: Neuroblastoma 98.6 5.1E-05 1.1E-09 73.8 25.0 222 63-298 3-256 (282)
325 KOG2695 WD40 repeat protein [G 98.5 3E-07 6.6E-12 90.2 9.2 161 64-228 218-387 (425)
326 KOG2695 WD40 repeat protein [G 98.5 2.4E-07 5.2E-12 90.9 8.5 151 115-271 228-388 (425)
327 cd00216 PQQ_DH Dehydrogenases 98.5 0.0001 2.2E-09 83.1 29.5 262 27-297 61-420 (488)
328 PF14583 Pectate_lyase22: Olig 98.5 0.00081 1.8E-08 70.0 32.4 245 43-292 16-303 (386)
329 KOG1645 RING-finger-containing 98.4 8.5E-06 1.8E-10 82.1 16.4 251 4-259 182-461 (463)
330 cd00216 PQQ_DH Dehydrogenases 98.4 0.00021 4.6E-09 80.6 28.4 234 28-270 111-435 (488)
331 PF00400 WD40: WD domain, G-be 98.4 1.4E-06 3.1E-11 59.4 6.6 39 47-85 1-39 (39)
332 KOG0882 Cyclophilin-related pe 98.4 7.4E-06 1.6E-10 83.5 14.0 209 56-268 8-240 (558)
333 PF06433 Me-amine-dh_H: Methyl 98.4 0.00065 1.4E-08 69.4 27.7 246 19-270 39-331 (342)
334 KOG1645 RING-finger-containing 98.4 3.7E-05 8E-10 77.6 18.5 249 39-292 175-453 (463)
335 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.2E-11 58.7 6.3 39 89-127 1-39 (39)
336 PF14583 Pectate_lyase22: Olig 98.3 0.0011 2.4E-08 69.0 28.9 272 22-297 42-377 (386)
337 COG5290 IkappaB kinase complex 98.3 0.0027 5.9E-08 70.0 32.3 84 693-776 903-988 (1243)
338 KOG2066 Vacuolar assembly/sort 98.3 5.3E-05 1.2E-09 83.3 19.1 155 11-173 54-233 (846)
339 PF08596 Lgl_C: Lethal giant l 98.2 0.00057 1.2E-08 73.6 25.5 266 17-291 3-326 (395)
340 PF06977 SdiA-regulated: SdiA- 98.2 0.00068 1.5E-08 67.6 24.0 201 9-214 15-247 (248)
341 KOG1008 Uncharacterized conser 98.2 4.2E-07 9.2E-12 96.5 1.0 200 14-217 55-275 (783)
342 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0026 5.5E-08 69.7 29.5 211 20-242 33-272 (410)
343 PRK02888 nitrous-oxide reducta 98.1 0.00072 1.6E-08 74.7 24.1 216 26-260 140-405 (635)
344 PF02897 Peptidase_S9_N: Proly 98.1 0.0074 1.6E-07 67.2 32.8 243 17-264 125-409 (414)
345 PF08596 Lgl_C: Lethal giant l 98.1 0.002 4.4E-08 69.4 26.4 228 59-297 3-286 (395)
346 PF11768 DUF3312: Protein of u 98.1 0.00068 1.5E-08 73.0 21.9 113 59-175 207-331 (545)
347 COG0823 TolB Periplasmic compo 98.1 0.00022 4.8E-09 77.5 18.6 183 10-198 187-382 (425)
348 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00071 1.5E-08 73.1 22.7 232 15-249 42-347 (353)
349 PF11768 DUF3312: Protein of u 98.0 0.00011 2.5E-09 78.7 15.5 118 18-137 208-337 (545)
350 PF06433 Me-amine-dh_H: Methyl 98.0 0.025 5.4E-07 58.1 31.5 252 37-298 17-317 (342)
351 KOG3621 WD40 repeat-containing 98.0 0.00063 1.4E-08 74.2 20.3 139 98-239 32-180 (726)
352 COG0823 TolB Periplasmic compo 98.0 0.00045 9.8E-09 75.1 19.6 203 38-249 174-389 (425)
353 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0099 2.1E-07 65.1 29.9 191 80-283 62-271 (410)
354 PF06977 SdiA-regulated: SdiA- 98.0 0.0055 1.2E-07 61.2 25.1 200 52-256 16-247 (248)
355 PRK02888 nitrous-oxide reducta 97.9 0.0017 3.7E-08 71.8 22.0 215 23-249 200-451 (635)
356 PF00780 CNH: CNH domain; Int 97.9 0.012 2.6E-07 61.3 28.0 227 25-270 5-266 (275)
357 KOG1008 Uncharacterized conser 97.9 4.2E-06 9.1E-11 89.2 1.5 196 99-298 56-272 (783)
358 PF03178 CPSF_A: CPSF A subuni 97.9 0.0063 1.4E-07 64.9 25.2 213 79-297 2-261 (321)
359 COG3391 Uncharacterized conser 97.9 0.023 5.1E-07 61.8 29.8 261 17-282 32-309 (381)
360 COG3391 Uncharacterized conser 97.8 0.045 9.8E-07 59.6 31.3 252 39-297 13-279 (381)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.019 4.1E-07 65.1 28.0 237 28-270 121-501 (527)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.12 2.7E-06 58.6 33.5 190 69-265 69-339 (527)
363 PF00780 CNH: CNH domain; Int 97.7 0.06 1.3E-06 56.0 29.0 138 154-300 6-165 (275)
364 PF03178 CPSF_A: CPSF A subuni 97.7 0.035 7.7E-07 59.2 27.1 211 37-256 2-262 (321)
365 KOG4640 Anaphase-promoting com 97.7 0.00021 4.5E-09 76.8 9.6 93 15-108 20-114 (665)
366 PF08553 VID27: VID27 cytoplas 97.6 0.0066 1.4E-07 70.0 21.8 142 154-298 492-645 (794)
367 KOG1897 Damage-specific DNA bi 97.6 0.23 5E-06 57.2 50.4 455 16-492 354-898 (1096)
368 KOG4640 Anaphase-promoting com 97.6 0.00029 6.3E-09 75.8 9.8 94 57-151 20-114 (665)
369 COG3386 Gluconolactonase [Carb 97.5 0.046 9.9E-07 56.8 24.2 218 21-248 30-274 (307)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.049 1.1E-06 58.6 24.9 89 20-109 6-118 (415)
371 PF14870 PSII_BNR: Photosynthe 97.5 0.16 3.5E-06 52.4 32.5 270 99-415 16-301 (302)
372 PF02897 Peptidase_S9_N: Proly 97.5 0.15 3.2E-06 56.8 30.0 221 61-286 127-385 (414)
373 KOG1897 Damage-specific DNA bi 97.4 0.45 9.6E-06 55.0 41.7 419 38-493 471-943 (1096)
374 KOG2280 Vacuolar assembly/sort 97.4 0.38 8.1E-06 54.0 31.9 121 648-779 446-577 (829)
375 PRK13616 lipoprotein LpqB; Pro 97.4 0.013 2.7E-07 67.0 19.6 184 16-213 350-564 (591)
376 PF14870 PSII_BNR: Photosynthe 97.3 0.28 6.2E-06 50.6 30.6 230 56-297 15-257 (302)
377 COG3204 Uncharacterized protei 97.3 0.054 1.2E-06 53.7 19.9 165 11-175 81-265 (316)
378 PRK10115 protease 2; Provision 97.2 0.89 1.9E-05 53.7 34.6 237 17-262 128-397 (686)
379 PRK13616 lipoprotein LpqB; Pro 97.1 0.038 8.2E-07 63.1 20.5 184 58-255 350-564 (591)
380 KOG2079 Vacuolar assembly/sort 97.1 0.0089 1.9E-07 68.8 14.9 110 59-172 89-202 (1206)
381 PHA02713 hypothetical protein; 97.1 0.035 7.7E-07 63.7 20.3 218 38-263 273-537 (557)
382 KOG2079 Vacuolar assembly/sort 97.1 0.0039 8.5E-08 71.5 12.0 100 26-128 98-202 (1206)
383 KOG4499 Ca2+-binding protein R 97.1 0.16 3.5E-06 48.4 20.3 215 27-247 27-272 (310)
384 COG3490 Uncharacterized protei 97.1 0.34 7.4E-06 47.7 23.0 242 46-298 57-345 (366)
385 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.063 1.4E-06 45.2 15.9 102 188-297 2-110 (111)
386 PF14727 PHTB1_N: PTHB1 N-term 97.1 0.6 1.3E-05 50.6 33.8 270 27-307 37-367 (418)
387 PF05096 Glu_cyclase_2: Glutam 97.1 0.25 5.3E-06 49.2 22.7 181 18-206 47-250 (264)
388 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.041 8.8E-07 46.3 14.6 101 145-254 2-109 (111)
389 KOG2444 WD40 repeat protein [G 97.0 0.00083 1.8E-08 63.4 4.8 141 114-259 33-177 (238)
390 PF05694 SBP56: 56kDa selenium 97.0 0.63 1.4E-05 49.5 26.0 192 68-261 86-344 (461)
391 COG3204 Uncharacterized protei 97.0 0.17 3.6E-06 50.4 20.3 169 54-225 82-270 (316)
392 COG3490 Uncharacterized protei 97.0 0.13 2.9E-06 50.5 19.2 241 146-416 71-346 (366)
393 PF15390 DUF4613: Domain of un 97.0 0.36 7.8E-06 52.7 24.3 153 13-173 17-186 (671)
394 COG3386 Gluconolactonase [Carb 96.9 0.24 5.2E-06 51.5 22.5 219 64-290 31-274 (307)
395 KOG2395 Protein involved in va 96.9 0.029 6.3E-07 59.6 15.5 141 154-297 344-497 (644)
396 smart00320 WD40 WD40 repeats. 96.9 0.0029 6.3E-08 42.1 5.8 39 47-85 2-40 (40)
397 smart00320 WD40 WD40 repeats. 96.9 0.0031 6.6E-08 42.0 5.8 39 89-127 2-40 (40)
398 PF08553 VID27: VID27 cytoplas 96.9 0.022 4.7E-07 65.9 15.6 135 119-258 502-646 (794)
399 KOG2247 WD40 repeat-containing 96.8 0.00034 7.4E-09 72.9 0.3 128 668-824 3-130 (615)
400 KOG4441 Proteins containing BT 96.8 0.083 1.8E-06 60.4 19.4 228 25-261 283-548 (571)
401 PRK13684 Ycf48-like protein; P 96.8 1 2.2E-05 48.0 29.7 226 57-297 45-284 (334)
402 PF13429 TPR_15: Tetratricopep 96.8 0.0024 5.2E-08 66.7 6.3 137 647-822 118-274 (280)
403 PF15390 DUF4613: Domain of un 96.7 1.2 2.7E-05 48.7 27.2 149 100-259 20-186 (671)
404 COG3292 Predicted periplasmic 96.7 0.18 3.9E-06 54.5 19.2 272 15-297 164-443 (671)
405 KOG0985 Vesicle coat protein c 96.7 0.026 5.6E-07 64.5 13.5 113 651-763 1087-1247(1666)
406 TIGR03074 PQQ_membr_DH membran 96.6 0.63 1.4E-05 54.9 25.5 230 27-268 194-486 (764)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.5 1.1E-05 51.0 22.6 84 142-226 307-407 (415)
408 PF05694 SBP56: 56kDa selenium 96.6 0.71 1.5E-05 49.1 22.8 211 154-384 86-344 (461)
409 KOG2247 WD40 repeat-containing 96.6 0.00043 9.3E-09 72.2 -0.5 279 14-301 33-368 (615)
410 PHA02713 hypothetical protein; 96.6 0.19 4.1E-06 57.8 20.5 204 80-293 273-523 (557)
411 KOG4441 Proteins containing BT 96.5 0.15 3.3E-06 58.4 19.0 221 67-297 283-537 (571)
412 PRK10115 protease 2; Provision 96.5 2.8 6.1E-05 49.5 29.9 195 59-258 128-343 (686)
413 PF14727 PHTB1_N: PTHB1 N-term 96.4 1.8 3.9E-05 47.0 29.2 146 111-258 37-203 (418)
414 KOG2444 WD40 repeat protein [G 96.4 0.0037 8E-08 59.2 4.5 75 111-185 70-144 (238)
415 PLN03081 pentatricopeptide (PP 96.3 0.028 6E-07 67.2 12.4 149 601-749 171-386 (697)
416 PF05096 Glu_cyclase_2: Glutam 96.3 1.4 2.9E-05 44.1 25.9 194 90-291 34-250 (264)
417 PRK13684 Ycf48-like protein; P 96.3 2 4.4E-05 45.8 27.0 268 15-298 45-328 (334)
418 TIGR00990 3a0801s09 mitochondr 96.3 0.019 4E-07 67.6 10.3 130 620-749 335-493 (615)
419 KOG2395 Protein involved in va 96.3 0.079 1.7E-06 56.5 13.3 144 68-217 344-500 (644)
420 KOG4499 Ca2+-binding protein R 96.2 1.2 2.6E-05 42.7 22.0 207 70-282 28-264 (310)
421 PF12894 Apc4_WD40: Anaphase-p 96.2 0.016 3.6E-07 40.5 5.6 35 14-49 10-44 (47)
422 PF10647 Gmad1: Lipoprotein Lp 96.2 1.1 2.4E-05 45.6 21.2 145 17-165 25-187 (253)
423 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.9 4.1E-05 43.5 25.2 221 60-281 25-307 (336)
424 KOG2280 Vacuolar assembly/sort 96.0 1.1 2.3E-05 50.6 20.7 201 77-283 62-271 (829)
425 KOG1898 Splicing factor 3b, su 95.9 5.1 0.00011 47.2 32.7 100 27-126 549-668 (1205)
426 PF12894 Apc4_WD40: Anaphase-p 95.9 0.024 5.2E-07 39.7 5.4 34 57-91 11-44 (47)
427 PF07995 GSDH: Glucose / Sorbo 95.8 3.2 6.9E-05 44.3 27.7 234 17-254 3-330 (331)
428 PLN03218 maturation of RBCL 1; 95.8 0.058 1.3E-06 66.1 11.7 129 619-747 475-638 (1060)
429 KOG0550 Molecular chaperone (D 95.8 0.026 5.7E-07 58.3 7.4 153 668-827 249-432 (486)
430 PLN03218 maturation of RBCL 1; 95.7 0.12 2.5E-06 63.5 13.9 147 601-747 419-603 (1060)
431 KOG3630 Nuclear pore complex, 95.7 0.45 9.8E-06 55.8 17.0 144 101-247 102-261 (1405)
432 PLN03081 pentatricopeptide (PP 95.6 0.11 2.5E-06 62.0 13.1 154 601-762 373-554 (697)
433 PLN03077 Protein ECB2; Provisi 95.5 0.1 2.3E-06 64.1 12.8 105 647-751 331-452 (857)
434 PHA03098 kelch-like protein; P 95.4 0.46 1E-05 54.9 16.7 145 27-176 295-467 (534)
435 PHA03098 kelch-like protein; P 95.3 0.52 1.1E-05 54.4 16.8 184 67-261 293-513 (534)
436 PRK11788 tetratricopeptide rep 95.2 0.19 4.2E-06 55.4 12.6 75 621-695 112-207 (389)
437 KOG4626 O-linked N-acetylgluco 95.2 0.12 2.5E-06 56.4 10.0 67 647-713 294-373 (966)
438 TIGR00990 3a0801s09 mitochondr 95.1 0.15 3.3E-06 60.0 11.8 46 649-694 409-459 (615)
439 PF10647 Gmad1: Lipoprotein Lp 95.1 4.6 9.9E-05 41.1 22.1 142 59-206 25-184 (253)
440 KOG2076 RNA polymerase III tra 95.0 0.16 3.5E-06 58.0 10.7 102 653-762 153-267 (895)
441 PF10168 Nup88: Nuclear pore c 95.0 6.9 0.00015 46.0 24.2 33 230-262 147-182 (717)
442 KOG1155 Anaphase-promoting com 94.9 0.17 3.7E-06 53.3 9.9 87 664-761 428-532 (559)
443 PRK15363 pathogenicity island 94.7 0.38 8.3E-06 43.8 10.4 106 621-747 12-127 (157)
444 PF10168 Nup88: Nuclear pore c 94.6 11 0.00023 44.6 24.6 80 59-138 86-188 (717)
445 COG1520 FOG: WD40-like repeat 94.6 8.2 0.00018 42.0 30.2 193 29-228 70-279 (370)
446 PRK11788 tetratricopeptide rep 94.6 0.23 5E-06 54.7 11.1 122 599-720 118-275 (389)
447 PF10602 RPN7: 26S proteasome 94.5 0.18 3.9E-06 47.9 8.4 83 668-750 36-140 (177)
448 PRK11447 cellulose synthase su 94.4 0.46 1E-05 60.3 14.5 102 649-750 583-698 (1157)
449 PLN03077 Protein ECB2; Provisi 94.4 0.22 4.7E-06 61.3 11.3 155 600-762 536-717 (857)
450 KOG1983 Tomosyn and related SN 94.4 1.7 3.6E-05 53.2 18.2 231 15-263 35-268 (993)
451 PRK15174 Vi polysaccharide exp 94.3 0.35 7.7E-06 57.0 12.2 150 599-748 53-237 (656)
452 KOG3630 Nuclear pore complex, 94.3 0.46 1E-05 55.7 12.3 140 145-288 103-260 (1405)
453 PHA02790 Kelch-like protein; P 94.3 1.8 3.9E-05 49.0 17.3 181 68-261 271-472 (480)
454 PHA02790 Kelch-like protein; P 94.3 1.7 3.7E-05 49.1 17.2 143 27-176 272-426 (480)
455 TIGR02604 Piru_Ver_Nterm putat 94.3 9.7 0.00021 41.3 22.9 140 59-204 15-200 (367)
456 KOG2076 RNA polymerase III tra 94.1 0.3 6.5E-06 56.0 10.2 105 600-735 151-266 (895)
457 PRK15174 Vi polysaccharide exp 94.1 0.64 1.4E-05 54.8 13.7 46 650-695 223-277 (656)
458 PF14938 SNAP: Soluble NSF att 94.0 0.23 5E-06 51.6 8.9 96 671-779 38-143 (282)
459 PRK10370 formate-dependent nit 93.9 0.42 9.1E-06 46.5 9.9 85 665-749 70-170 (198)
460 TIGR03074 PQQ_membr_DH membran 93.9 18 0.0004 43.0 36.7 186 111-297 194-473 (764)
461 TIGR02917 PEP_TPR_lipo putativ 93.7 0.68 1.5E-05 57.5 13.9 127 622-748 709-862 (899)
462 PF07995 GSDH: Glucose / Sorbo 93.6 12 0.00026 40.0 29.1 231 59-296 3-330 (331)
463 TIGR02521 type_IV_pilW type IV 93.5 0.71 1.5E-05 46.1 11.5 47 649-695 75-126 (234)
464 TIGR02917 PEP_TPR_lipo putativ 93.4 0.65 1.4E-05 57.7 13.0 75 620-694 537-627 (899)
465 TIGR02604 Piru_Ver_Nterm putat 93.3 4.4 9.6E-05 44.0 17.6 140 16-160 14-200 (367)
466 KOG2003 TPR repeat-containing 93.2 0.59 1.3E-05 48.9 9.7 163 595-757 426-647 (840)
467 TIGR03118 PEPCTERM_chp_1 conse 93.2 11 0.00024 38.3 24.3 218 18-239 25-307 (336)
468 KOG2377 Uncharacterized conser 93.1 1.6 3.4E-05 46.1 12.5 139 20-162 27-172 (657)
469 KOG1916 Nuclear protein, conta 93.0 0.091 2E-06 59.5 3.9 116 9-127 126-263 (1283)
470 PF12234 Rav1p_C: RAVE protein 93.0 3.1 6.8E-05 47.4 15.9 102 155-258 41-155 (631)
471 KOG1898 Splicing factor 3b, su 92.9 26 0.00056 41.8 31.5 70 15-84 582-668 (1205)
472 KOG2377 Uncharacterized conser 92.8 3.2 6.9E-05 44.0 14.3 129 68-199 32-167 (657)
473 PF14938 SNAP: Soluble NSF att 92.8 1.2 2.7E-05 46.2 12.0 21 740-760 159-179 (282)
474 PF14761 HPS3_N: Hermansky-Pud 92.8 9.8 0.00021 36.7 16.7 102 28-131 29-165 (215)
475 KOG4626 O-linked N-acetylgluco 92.7 0.37 8E-06 52.7 7.7 44 651-694 196-244 (966)
476 smart00036 CNH Domain found in 92.7 15 0.00032 38.5 30.2 230 27-269 13-280 (302)
477 PRK11447 cellulose synthase su 92.6 1.1 2.3E-05 57.2 13.3 96 623-718 580-695 (1157)
478 PF13424 TPR_12: Tetratricopep 92.4 1.4 3.1E-05 35.0 9.4 73 669-761 6-78 (78)
479 PRK09782 bacteriophage N4 rece 92.3 2.1 4.5E-05 52.5 14.5 94 651-744 521-630 (987)
480 PRK09782 bacteriophage N4 rece 92.2 1 2.3E-05 55.0 11.7 42 653-694 590-635 (987)
481 PF12234 Rav1p_C: RAVE protein 92.1 5.5 0.00012 45.5 16.4 111 59-172 31-155 (631)
482 COG5290 IkappaB kinase complex 92.1 0.53 1.1E-05 52.9 8.1 96 667-763 934-1035(1243)
483 PF10313 DUF2415: Uncharacteri 92.1 0.66 1.4E-05 31.5 5.5 32 16-47 1-35 (43)
484 COG3823 Glutamine cyclotransfe 92.1 9.1 0.0002 36.3 14.8 173 27-205 56-247 (262)
485 PF10433 MMS1_N: Mono-function 91.9 27 0.00059 39.9 37.8 282 15-300 43-388 (504)
486 COG3292 Predicted periplasmic 91.9 24 0.00051 39.1 22.1 148 57-215 164-316 (671)
487 PRK10747 putative protoheme IX 91.8 2.8 6.1E-05 46.2 13.8 79 671-749 266-354 (398)
488 PF12895 Apc3: Anaphase-promot 91.7 0.31 6.8E-06 39.7 4.7 75 652-748 2-83 (84)
489 COG3063 PilF Tfp pilus assembl 91.5 2.1 4.5E-05 41.4 10.4 109 653-763 56-184 (250)
490 KOG0686 COP9 signalosome, subu 91.5 0.58 1.3E-05 48.7 7.2 83 668-750 150-256 (466)
491 PF14781 BBS2_N: Ciliary BBSom 91.5 9.3 0.0002 33.7 14.0 120 18-140 1-135 (136)
492 PRK15359 type III secretion sy 91.4 2 4.4E-05 39.3 10.2 80 648-748 33-117 (144)
493 PF13429 TPR_15: Tetratricopep 91.2 0.88 1.9E-05 47.4 8.7 101 647-748 52-171 (280)
494 PF13432 TPR_16: Tetratricopep 91.0 0.31 6.7E-06 37.3 3.8 46 649-694 7-57 (65)
495 PF08728 CRT10: CRT10; InterP 90.8 9.2 0.0002 44.2 16.4 144 27-172 49-245 (717)
496 PF10313 DUF2415: Uncharacteri 90.7 1.2 2.7E-05 30.2 5.8 32 100-131 1-35 (43)
497 PF10214 Rrn6: RNA polymerase 90.7 42 0.00092 40.5 23.2 160 13-175 77-278 (765)
498 PF14761 HPS3_N: Hermansky-Pud 90.7 17 0.00036 35.2 19.7 55 234-290 22-78 (215)
499 PRK10049 pgaA outer membrane p 90.7 2.3 5E-05 51.4 12.7 96 599-694 248-385 (765)
500 TIGR02521 type_IV_pilW type IV 90.7 1.8 3.9E-05 43.1 10.3 97 652-748 44-160 (234)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-148 Score=1125.96 Aligned_cols=793 Identities=67% Similarity=1.169 Sum_probs=781.8
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002496 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~ 82 (915)
+++++++++..|+++|.++.|||..+|++++.++|.|.|||++++.+++++...+-||++..|.+..+|+++|++|+.|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||+++|+++++.|.+|++.|+|++.+|..++++++|+|.+|++||++.+|.+.+++.+|.+.|++++|+|+|.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC
Q 002496 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~ 242 (915)
.|++|++|.+.++.+.+++.+|..+|+|++|.+.|++|||++|++|.+|++||+++..|++++.+|..+|+.++|+|.-+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCce
Q 002496 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i 322 (915)
++++|++||+||||+..|+++..+++...+++|+++-.+.++.+++|+++|.+.+.++++.|.++|+.+|+++|+.++++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEecC-C
Q 002496 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD-G 401 (915)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~-g 401 (915)
+..++++.....++.||+++++..+++++++.+|+.+++||+|+++++|++|+++||+...||++.+|....++|++| +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSN 400 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCC
Confidence 999999988878899999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEecCCeEEEeccCccceeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEEccccEEEEcCCCCEEEEE
Q 002496 402 EYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 481 (915)
Q Consensus 402 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~ 481 (915)
.|++..+++.|+++ ++|++.+++++.++.+.|+||.+|++.+++.++||||++++++++++...+.+.|+.+|.+|+++
T Consensus 401 e~avRes~~~vki~-knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 401 EFAVRESNGNVKIF-KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIA 479 (794)
T ss_pred eEEEEecCCceEEE-ecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEecCCCEEEEE
Confidence 88998889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEecccc
Q 002496 482 SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRP 561 (915)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (915)
+++.+|++.+|++.+....+.+..++++|.+++|+.+.|..+.++++.|.+|||+|+|.+++++|+++++..++.+++.+
T Consensus 480 ~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~ 559 (794)
T KOG0276|consen 480 GDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI 559 (794)
T ss_pred ecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccC
Q 002496 562 MYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATD 641 (915)
Q Consensus 562 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~ 641 (915)
+|+++|+++++|+|+.|++.++++|.+.+.+++||++++++|++.|.++|++|+.++++++++||+++|++++||+++.|
T Consensus 560 mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D 639 (794)
T KOG0276|consen 560 MYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD 639 (794)
T ss_pred hhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002496 642 PDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (915)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~ 721 (915)
|+++|+++|++|+++.|+++|.+.+++.+|++||++|++.+++.+|.+||.+++|+.+|+++|...|+++++..++..+.
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCC
Q 002496 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYS 796 (915)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~ 796 (915)
.+|++|.||.|+++.|++++|.+++++++|++||+.|||+|+|+++++++.+|++.|.++++|+|++|++|++|+
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k~~~sladp~~~~ 794 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEKAAESLADPEEYS 794 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhhhhhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-84 Score=685.33 Aligned_cols=720 Identities=27% Similarity=0.522 Sum_probs=631.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
..++...+.+|..++|||..+|++++..+|.|++||++-+.++..|..|++||+.+.|+|++.++++|++|-.|+||+++
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.+++.++.+|-+.|+.+.|++.-++|+++|+|.+|+||++.+. .+...+.+|.++|+|..|+| ....++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence 99999999999999999999999999999999999999999998 89999999999999999999 88999999999999
Q ss_pred EEEECCCCC-----------------------------CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002496 168 KIWNLGSPD-----------------------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 168 ~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++||+..-+ ..+.+.+|..+|+.++|+|.-. +|++|++|+.|++|.+..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEecc
Confidence 999985310 1245678999999999998765 899999999999999875
Q ss_pred Cc--EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002496 219 KS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 219 ~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
.+ .+-+..+|.++|+++-|+|...+|++.|+|++|++||+.....+.++....++.|.++.+|..+.+++|.+.|.+.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 44 4667789999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---C
Q 002496 297 VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---D 373 (915)
Q Consensus 297 i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---~ 373 (915)
+.+.+++|.++++.+ .+++.+...++.+++.+. .......++..+..-.++.+++++|....+.+|+ +
T Consensus 318 FkleRErpa~~v~~n-~LfYvkd~~i~~~d~~t~--------~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 318 FKLERERPAYAVNGN-GLFYVKDRFIRSYDLRTQ--------KDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred EEEcccCceEEEcCC-EEEEEccceEEeeecccc--------ccceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 999999999999876 455566888887776432 1112234444555567889999999988888884 6
Q ss_pred CcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceee--cCcEEEEe
Q 002496 374 GEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY--GGTLLAMC 443 (915)
Q Consensus 374 ~~~~i~~~~~~~-------~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~--~g~~La~~ 443 (915)
+.+.+|...... ....++.....|-..+++++... +..+.+-++..+..+.+...-+.+.|+ |...|...
T Consensus 389 ~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 389 GEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR 468 (1202)
T ss_pred CeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE
Confidence 778777654331 11224445666777777777766 566777766665555555444455555 44577777
Q ss_pred eCCeEEEEeccCCcEEEEEE-ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeee
Q 002496 444 SNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETN 522 (915)
Q Consensus 444 ~~~~v~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 522 (915)
+.+.|.+||++..+.+..+. ..++.+.||.|+.++|..++..+.+...+.+. ...++| .
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l-------------------~~sihE-t 528 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLEL-------------------LCSIHE-T 528 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhh-------------------eecchh-e
Confidence 78899999999999888888 48999999999999999999999986533222 344555 6
Q ss_pred eeEEeeEEecC-EEEEEccCCeEEEEE-CCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHH
Q 002496 523 ERVRTGLWVGD-CFIYNNSSWRLNYCV-GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM 600 (915)
Q Consensus 523 ~~i~~~~w~~~-~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 600 (915)
.+|++++|+++ +|||+|. ++|.|.+ +|+.+.+..++.++|+.+ .+|+.+||+++++.+....++.....|..+++
T Consensus 529 iriksgawde~gVfiYtT~-nHikYal~~GD~GIikTLd~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy~FKlALi 605 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYTTL-NHIKYALENGDSGIIKTLDKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEYRFKLALL 605 (1202)
T ss_pred eEeeeceeccCceEEEEeh-hhhhhhhccCCcceEEecccceEEEE--eeCCEEEEEecCCCeEEEeechHHHHHHHHHH
Confidence 89999999996 9999998 8999988 899999999999999988 58999999999999999999999999999999
Q ss_pred ccCHHHHhhhcCCCCcchH--HHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHH
Q 002496 601 RGDLERANEILPSIPKEHH--NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELA 678 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~a 678 (915)
++.+++-..+ |....+ +.+..||+++|+++.||++.+|+..+|+++|+.|+++.|++.|++++++..|+.||+.|
T Consensus 606 ~k~ydeVl~l---I~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~A 682 (1202)
T KOG0292|consen 606 NKKYDEVLHL---IKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEA 682 (1202)
T ss_pred hhhhHHHHHH---HHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999986665 445544 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHH
Q 002496 679 MSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALM 758 (915)
Q Consensus 679 l~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ 758 (915)
+.+||..+||.||++.+++++|.+||..+|+.+++++++++|+..++..--++.++|+|+.++-.+++..+|+.+.|..-
T Consensus 683 l~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 683 LRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred HHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCch
Q 002496 759 ARSYLPSK 766 (915)
Q Consensus 759 ar~~~~~~ 766 (915)
|.+++.+.
T Consensus 763 a~~~G~~~ 770 (1202)
T KOG0292|consen 763 AAAHGLED 770 (1202)
T ss_pred HhhcCcHH
Confidence 99998744
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=7.6e-69 Score=572.53 Aligned_cols=433 Identities=59% Similarity=1.051 Sum_probs=358.3
Q ss_pred CceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEec
Q 002496 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSS 399 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 399 (915)
++++.+++++... +.||+.+++..++++.+..+|+.++++|+|++++++++|.+.+|+...++++.+|....++|++
T Consensus 2 ~~i~~~~~~~~~~---~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 2 NEIRTANLKNISE---IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS 78 (443)
T ss_dssp TEEEEEE--S--------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T
T ss_pred CceEEEECcCCCc---cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec
Confidence 5677777777654 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCeEEEeccCcccee--eeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEEcc-ccEEEEcCCCC
Q 002496 400 DGEYAVRESSSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVT-VKNLYWADSGD 476 (915)
Q Consensus 400 ~g~~l~~~~~~~i~v~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~~~-i~~v~~s~dg~ 476 (915)
+++|++..++++|.|+ .+++... .+...++.+.|++|.+|++.+++.|++|||++++.+++++.. |+.|.||++|+
T Consensus 79 ~n~yAv~~~~~~I~I~-kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIY-KNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGE 157 (443)
T ss_dssp SSEEEEE-TTS-EEEE-ETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSS
T ss_pred CccEEEEECCCeEEEE-EcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCC
Confidence 9999999989999997 5565555 677788999999999999999999999999999999999975 79999999999
Q ss_pred EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEE
Q 002496 477 LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMF 556 (915)
Q Consensus 477 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~ 556 (915)
+||+.+++.++++.++.+.+.. .+++|.+++|+.++|+..+|++++|++|+|+|+|.+ +++|+++|+.+++.
T Consensus 158 ~val~t~~~i~il~~~~~~~~~-------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~ 229 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAA-------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIA 229 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHH-------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEE
T ss_pred EEEEEeCCeEEEEEecchhccc-------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEE
Confidence 9999999999999999988776 667899999999999999999999999999999995 99999999999999
Q ss_pred ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHH------HhhhcCCCCcchHHHHHHHHHhCC
Q 002496 557 HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLER------ANEILPSIPKEHHNSVARFLESRG 630 (915)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------a~~~l~~i~~~~~~~~~~~~~~~~ 630 (915)
+++.++|++++.++.+++|++|+++++.++.+++.+++|++++++++++. +..++++||.++++++++||+++|
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred ChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH
Q 002496 631 MIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA 710 (915)
Q Consensus 631 ~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~ 710 (915)
+++.||++++||+++|+++|++|+++.|+++|+.++++.+|++||+.||.+|++++|++||.+++|+++|.+||..+||.
T Consensus 310 ~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 310 YPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp -HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred CHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002496 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (915)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~ 764 (915)
+++++|++++...|+.+.||++++++||+++|++++++++|+++|+.+||+|+|
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-49 Score=377.71 Aligned_cols=330 Identities=24% Similarity=0.366 Sum_probs=295.8
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~ 86 (915)
....+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||++||+|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcee-EEEecCCCCEEEEEEcC-----CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 87 NTMDKV-KVFEAHTDYIRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 87 ~~~~~~-~~~~~~~~~i~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
++|+.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+ .+...+.+|..+|+|+.|- +..++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEe
Confidence 998876 56889999999999976 5668999999999999999988 8888999999999999997 5789999
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEe-----------CCC-----------------------cCEEEEEe
Q 002496 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-----------GGD-----------------------KPYLITGS 206 (915)
Q Consensus 161 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-----------~~~-----------------------~~~l~~~~ 206 (915)
|+.|++|++|+...|.....+++|...|+.++.+. .+. ...+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 99999999999999999999999999999998872 121 12499999
Q ss_pred CCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCE
Q 002496 207 DDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285 (915)
Q Consensus 207 ~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 285 (915)
+|.++.+|+... .+++..+.+|..-|..+.||||+++|++++.|.+|++||..+|+.+.++.+|...|+.++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 999999999754 5588889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC
Q 002496 286 IVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG 365 (915)
Q Consensus 286 l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g 365 (915)
|++|+.|.++.+|.-+.. . -..+++.|...+..+.|+|||
T Consensus 424 lVS~SkDsTLKvw~V~tk----------------------K------------------l~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTK----------------------K------------------LKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred EEEcCCCceEEEEEeeee----------------------e------------------ecccCCCCCceEEEEEecCCC
Confidence 999999999999731111 0 123467788889999999999
Q ss_pred CEEEEEc-CCcEEEE
Q 002496 366 RFVVVCG-DGEYIIY 379 (915)
Q Consensus 366 ~~lav~~-~~~~~i~ 379 (915)
+.++.++ |..+.+|
T Consensus 464 ~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLW 478 (480)
T ss_pred ceeecCCCceEEEee
Confidence 9999888 5556665
No 5
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=4.2e-45 Score=375.04 Aligned_cols=671 Identities=15% Similarity=0.196 Sum_probs=474.2
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~ 88 (915)
+....| .|..++|-|||..|+.+. +..+.|||...|.+.+++++|...|.|++|+.||+.+++|+.|..|.+|+.+-
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred hccccc--chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 334445 799999999999888876 55799999999999999999999999999999999999999999999998542
Q ss_pred CceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 89 MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 89 ~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
...++ .|.+.|.||.|+|-...|++|+-+ ..-+|..+...... ......+.+++|+. |+.+|+.|-.+|+|
T Consensus 85 ---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtn-DGqylalG~~nGTI 156 (1081)
T KOG1538|consen 85 ---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTN-DGQYLALGMFNGTI 156 (1081)
T ss_pred ---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecC-CCcEEEEeccCceE
Confidence 22332 699999999999999999999875 47789876542211 12346789999998 99999999999999
Q ss_pred EEEECCCCCCceEEe---cCCCCeeEEEEEeCC---CcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002496 168 KIWNLGSPDPNFTLD---AHQKGVNCVDYFTGG---DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 168 ~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
.+-+- ++++...+. +...+|.+++|+|+. ....+++.....++.++.+. |+.+..-+.-.-...|+.+.|+|
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC
Confidence 99864 455544444 367899999999964 33478889999999999886 66655444444556789999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCc
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
.+++.|+.|+.+++|. +.|-.+.++......||+++..|+++.+++|+.||++..+..-...+.+++.+......+..+
T Consensus 235 Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtD 313 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTD 313 (1081)
T ss_pred cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHH
Confidence 9999999999999998 567778888778889999999999999999999999988654444555555444444333333
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcc-----ce-eEE
Q 002496 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFG-----SA-LEF 395 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~-----~~-~~~ 395 (915)
+.+.+ +..++.+.+..+++ +..+++-. ..|||--...+.+|...+.+.+... .+ ..+
T Consensus 314 VivQh---------Li~~qkvrIkC~DL------VkKiaiYr--nrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf 376 (1081)
T KOG1538|consen 314 VIVQH---------LITEQKVRIKCKDL------VKKIAIYR--NRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKF 376 (1081)
T ss_pred HHHHH---------HhhcceeeeeHHHH------HHHHHhhh--hhheecccceEEEEeccccccccchhHHHHHHHhhc
Confidence 33222 34455555544443 33444443 3478888888999987765433221 11 112
Q ss_pred EEe---cCCcEEEEecCCeEEEeccCccceeeeecCccc----ceee----cCcEEEEeeCC--eEEEE-eccCCcEEEE
Q 002496 396 VWS---SDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSA----ERIY----GGTLLAMCSND--FICFY-DWAECRLIRR 461 (915)
Q Consensus 396 ~~s---~~g~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~----~~i~----~g~~La~~~~~--~v~~~-d~~~~~~i~~ 461 (915)
.+| -.+..++...+.++.-+| |.+.....+.+.. -.+. |..-|.+|..+ ..++| |-.-.-++.+
T Consensus 377 ~cSLlVVc~~HiVlCqekrLqClD--F~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~ 454 (1081)
T KOG1538|consen 377 ECSLLVVCANHIVLCQEKRLQCLD--FSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK 454 (1081)
T ss_pred cceEEEEEcCeEEEEcccceeeec--ccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec
Confidence 111 234455555555666654 3333222110000 0001 23356666655 44444 3222233344
Q ss_pred EEccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEec---CEEEEE
Q 002496 462 IDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG---DCFIYN 538 (915)
Q Consensus 462 ~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~---~~~i~~ 538 (915)
-...|+++..|...+.||+..+...+.|+- +..+ +.+.+ +..+.+..|+. ++|.|+
T Consensus 455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~D--------I~t~------------elL~Q-Epg~nSV~wNT~~E~MlcfT 513 (1081)
T KOG1538|consen 455 QATAVRCLDINASRKKLAVVDDNDTCLVYD--------IDTK------------ELLFQ-EPGANSVAWNTQCEDMLCFT 513 (1081)
T ss_pred ccceeEEeeccCCcceEEEEccCCeEEEEE--------ccCC------------ceEee-cCCCceEEeeccccceEEEe
Confidence 345899999999999999999999888751 1111 22223 45677888884 899998
Q ss_pred ccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcch
Q 002496 539 NSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEH 618 (915)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~ 618 (915)
+. |.++.-.+.... ...+...+++|| .+++++|+- ..++....++.....
T Consensus 514 ~~-g~L~VR~~~~P~--h~qk~~G~VvG~--~gsk~FCL~-~~~i~~~evp~~~~m------------------------ 563 (1081)
T KOG1538|consen 514 GG-GYLNVRASTFPV--HRQKLQGFVVGY--NGSKIFCLH-VFSISAVEVPQSAPM------------------------ 563 (1081)
T ss_pred cC-CceEEEeccCCc--chhcceEEEEEe--cCceEEEEE-eeeeecccccccccc------------------------
Confidence 87 767665543332 223344567786 688888862 111211111111111
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc
Q 002496 619 HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS 698 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~ 698 (915)
.++++.|.+++|+++|+.......|+.||..|+...+|++|.++|.|.+|..
T Consensus 564 ----------------------------~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~ 615 (1081)
T KOG1538|consen 564 ----------------------------YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR 615 (1081)
T ss_pred ----------------------------hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH
Confidence 2235778899999999999999999999999999999999999999999998
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcC--CchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-chHHHHH----
Q 002496 699 GLLLLYSSLGDAEGISKLASLAKEQG--KNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIV---- 771 (915)
Q Consensus 699 ~l~~l~~~~g~~~~~~~l~~~~~~~~--~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~-~~~~~~~---- 771 (915)
.|.+ +.+|.+...... +..+-+..+.+.|+|.||.++|.++|+-..|++|..++.+ ..+++.+
T Consensus 616 ~L~l----------i~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 616 YLEL----------ISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHH----------HHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 8777 555555554433 2223344455889999999999999999999999999876 6667766
Q ss_pred HHHHHhhhhcChhhhhhcCCCccCCCcccc
Q 002496 772 AIWRKDLQKVNPKAAESLADPEEYSNLFDD 801 (915)
Q Consensus 772 ~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~ 801 (915)
.+-|+.|..++..||....+|....+|+..
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLIS 715 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhc
Confidence 577888888888899999999888777753
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-43 Score=351.98 Aligned_cols=459 Identities=21% Similarity=0.341 Sum_probs=365.4
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEE
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIR 82 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--dg~i~ 82 (915)
....+..|+..++-..|||.|.|+|+|...|+|+|||....+ +..+++...++|..++|++++++|++.++ +...+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 345678999999999999999999999999999999976533 33467788999999999999999988765 33444
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
++-.++|..+..+.+|...|.++.|-|..+ ++++|++|++|.+|.-..- +....+..|...|.|+.|+| |+..|++.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysP-DG~~Fat~ 208 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSP-DGSRFATA 208 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECC-CCCeEEEe
Confidence 555557889999999999999999999887 5889999999999986654 66777888999999999999 89999999
Q ss_pred ECCCcEEEEECCCCCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE---------------
Q 002496 162 SLDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--------------- 223 (915)
Q Consensus 162 ~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------- 223 (915)
+.||+|.+||-.+++.+..+. +|++.|..++|+|++. .+++++.|.+++|||+.+.++++
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 999999999999999998887 8999999999999998 59999999999999987765443
Q ss_pred ----------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeee-ecCCccE
Q 002496 224 ----------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERV 274 (915)
Q Consensus 224 ----------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v 274 (915)
.+.+|...|+++..+|++++|++|+.||.|.-|+..++..-... ..|...|
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 34578999999999999999999999999999999888755443 5677888
Q ss_pred EEEEEecCCCEEEEEecCCeEEE-------------ecCCCcceeEecCCC-cEEEEeeCceEEEEeeecccceeccCCc
Q 002496 275 WAIGYMKSSRRIVIGYDEGTIMV-------------KIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 275 ~~i~~~~~~~~l~~~~~dg~v~i-------------~~~~~~~~~~~~~~g-~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
.+++.+..+.++.+|.+|..-++ .++.++...+...++ .++.....++.+++ +..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~-----------~~~ 435 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ-----------DQT 435 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe-----------cCC
Confidence 99988876666655555544333 234455555555553 55555666665544 111
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCe
Q 002496 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSK 411 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~s~~g~~l~~~~-~~~ 411 (915)
.+.. ......+.+++++|+++.+|+++ |+.+++|.+.... ..+.+.++++++|||+.|++++. .++
T Consensus 436 ~~~~-----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 436 KVSS-----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred ccee-----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 1110 12345678999999999999999 8999999887643 34568899999999999999988 799
Q ss_pred EEEeccCccceeeeec----------CcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE----ccccEEEEcCCCC
Q 002496 412 IKIFSKNFQEKRSVRP----------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID----VTVKNLYWADSGD 476 (915)
Q Consensus 412 i~v~~~~~~~~~~~~~----------~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~----~~i~~v~~s~dg~ 476 (915)
+.+||+..+....-.+ +++|+ ..+||+|+-| .|.+|+++.....-.++ ..|+.+.|-.+.+
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST 586 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCce
Confidence 9999987665543333 56666 8999999999 99999998765443333 3699999998876
Q ss_pred EEEEEeCCeEEEE
Q 002496 477 LVAIASDTSFYIL 489 (915)
Q Consensus 477 ~la~~~~~~~~~~ 489 (915)
.+.++.+.++-+|
T Consensus 587 vvSsG~Da~iK~W 599 (603)
T KOG0318|consen 587 VVSSGQDANIKVW 599 (603)
T ss_pred EEeccCcceeEEe
Confidence 5555544444444
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.6e-44 Score=344.31 Aligned_cols=324 Identities=21% Similarity=0.349 Sum_probs=284.8
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+...+.+|..+|.|+.|+|+|+.|++|+.|.++++||+.|..+..+.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEec----CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002496 129 EKGWMCTQIFEGHSHYVMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+++......+.+|...|++++|.| .....|++++.||+|+|||+..++.+..+.+|..+|+|+.|-. .+ +|.+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g-liyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG-LIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc-eEEe
Confidence 999888999999999999999987 2567899999999999999999999999999999999999943 33 8999
Q ss_pred EeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe-----------CCCC-------------------------EEEEEE
Q 002496 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----------PELP-------------------------IIITGS 248 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~-----------~~~~-------------------------~l~~~~ 248 (915)
|+.|++|++|+...|.+.+.+++|...|+.++.+ |.++ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999877 2233 499999
Q ss_pred cCCcEEEEeCCC-cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEe
Q 002496 249 EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNI 327 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 327 (915)
.|+++.+|+... .+++....+|..-|..+.||||++++|+++-|..|++|.++.. +.+..
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~las---------- 404 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLAS---------- 404 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhh----------
Confidence 999999999654 4477788899999999999999999999999999999865433 22211
Q ss_pred eecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-----CccceeEEEEecCC
Q 002496 328 KSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-----SFGSALEFVWSSDG 401 (915)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~g 401 (915)
+..|-..+..++||.|.++|+.|+ |.++.+|++...+.. +...+.++.|+|||
T Consensus 405 ---------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 405 ---------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred ---------------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 233445667899999999999999 889999988776532 45678999999999
Q ss_pred cEEEEec-CCeEEEe
Q 002496 402 EYAVRES-SSKIKIF 415 (915)
Q Consensus 402 ~~l~~~~-~~~i~v~ 415 (915)
+.++++. |..+++|
T Consensus 464 ~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLW 478 (480)
T ss_pred ceeecCCCceEEEee
Confidence 9988887 6778888
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-40 Score=347.07 Aligned_cols=458 Identities=18% Similarity=0.325 Sum_probs=378.5
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC--------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~ 86 (915)
..+|.|+.|||+|+++|+|. .+.+.||..... ...+++.+|...|.++.|+.|.++|++|+.|..+++|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 57899999999999999987 568999986542 234567788899999999999999999999999999999
Q ss_pred CCCce--eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC-----------------------Cee--------
Q 002496 87 NTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK-----------------------GWM-------- 133 (915)
Q Consensus 87 ~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~-----------------------~~~-------- 133 (915)
+..+. ...+.+|.++|....|..+...+++.+.||.+.+|.... +..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87666 566789999999999999999999999999999997761 000
Q ss_pred E--EEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC-Ce
Q 002496 134 C--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-HT 210 (915)
Q Consensus 134 ~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~ 210 (915)
. ...+......+++.+|++ ..+.|++|-..|...+|.+.....+..+.-...+|..+.|+..|+ +|+.|+.. |.
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA~g~~klgQ 331 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIAFGCSKLGQ 331 (893)
T ss_pred EEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEEEcCCccce
Confidence 0 111223347799999999 899999999999999999999999999988889999999998888 89888765 89
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
+-+|+.++...+...++|...+++++++|||+++++|++||.|++||...+-+..++..|...|+.+.|+..|+.+++.+
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCCC----------c----ceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002496 291 DEGTIMVKIGRE----------E----PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 291 ~dg~v~i~~~~~----------~----~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
-||+|+.|.... . ...+.+++|.++.+...+..-+-+ |++++|+.+-+ +..|+.++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv------WS~qTGqllDi----LsGHEgPV 481 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV------WSVQTGQLLDI----LSGHEGPV 481 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE------EEeecCeeeeh----hcCCCCcc
Confidence 999999985221 1 234667889988887766655543 66888887654 68999999
Q ss_pred ceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccc--------
Q 002496 357 QSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-------- 421 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~-------- 421 (915)
.+++|+|.|..|++++ |.++.+|++.... ......++.++|+|+|+-+++.+ +|.|.+||.+...
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR 561 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence 9999999999999999 9999999886542 22346789999999998777777 9999999943100
Q ss_pred ------e--------------eee-ecCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE----------------
Q 002496 422 ------K--------------RSV-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---------------- 463 (915)
Q Consensus 422 ------~--------------~~~-~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~---------------- 463 (915)
. +.+ ...+++| |..+.+++.. .||+||+.++-++++++
T Consensus 562 kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~ 637 (893)
T KOG0291|consen 562 KDLSGGRKETDRITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR 637 (893)
T ss_pred hhccccccccceeehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence 0 011 1156666 6666555555 99999998876554332
Q ss_pred -------------------------------------------ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 464 -------------------------------------------VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 -------------------------------------------~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|..|.|||.|+.+|+++..++.++.
T Consensus 638 rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYs 707 (893)
T KOG0291|consen 638 RKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYS 707 (893)
T ss_pred ccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEe
Confidence 135678999999999999999998864
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-43 Score=344.84 Aligned_cols=283 Identities=25% Similarity=0.365 Sum_probs=272.3
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCc
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~--~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
|-+.+|..+.||+++..|+||+-+|.+++|+..+...+.+|.+|...|.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999997 5689999999999999999989
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
.+..+.+|...|..++|+|+|++|++++.|.+-++||++++ .......+|...|.+++|+| ||.++++|+.|..-+||
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW 330 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999998 55666789999999999999 99999999999999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEEEEEc
Q 002496 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~~~~~ 249 (915)
|++++.++..+.+|..+|..+.|+|+|- .+++|+.|++++|||++..+++.++.+|.+-|+.++|+| .|.+|++++.
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCce--EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999998 699999999999999999999999999999999999999 7889999999
Q ss_pred CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
|++++||...++.+++++.+|.+.|.++..+++++.+++++.|.++.+|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999983
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=317.60 Aligned_cols=291 Identities=23% Similarity=0.422 Sum_probs=273.5
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
++...+.|+||.+.|.++.|++|.++|++++.||.+.|||.-+....+.++.....|..++|+|.|+++|+|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 45567899999999999999999999999999999999999999888889989999999999999999999999999999
Q ss_pred EECCCC------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCE
Q 002496 84 YNYNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 84 wd~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
|++.+. ...+.+.+|.+++.|+.|-+|+ .|+++|.|.+..+||++++ +..+.+.+|.+.|+++.++|.+++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCe
Confidence 999865 3456788999999999999865 6999999999999999999 7888999999999999999989999
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--CccCeEEE
Q 002496 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAV 235 (915)
Q Consensus 158 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i 235 (915)
|++|+.|++.++||++.+...++|.+|...|++++|+|+|. -+++|++|++.++||++..+.+..+.. ...+|+++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999998 599999999999999999888887763 34579999
Q ss_pred EEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+||..|++|++|..|..+.+||.-.++.+..+.+|..+|.++..+|||.-+++|+.|.+++||
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-38 Score=319.70 Aligned_cols=426 Identities=17% Similarity=0.264 Sum_probs=342.9
Q ss_pred hcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002496 10 KLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~ 88 (915)
.+.||+.+|.+++|-|..+ ++++|+.|+.|.+|+-..-+...++..|..-|+|+.|+|||.++++.+.||.|.+||=++
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4679999999999999988 588999999999999777788888889999999999999999999999999999999999
Q ss_pred CceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-cCC--ccEEEEEEecCCCCEEEEEE
Q 002496 89 MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS--HYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 89 ~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~~i~~~~~~p~~~~~l~~~~ 162 (915)
|+++..+. +|.+.|.+++|+||+..+++++.|.+++|||+.++ .+.+.+. +.. .....+.|. ...|++.+
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq---kd~lItVS 297 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS 297 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence 99999998 89999999999999999999999999999999988 5555443 222 344556674 56899999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCC
Q 002496 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPEL 241 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~ 241 (915)
.+|+|.+++...+.+...+.+|...|+++..+++++ +|++|+.||.|.-|+..++..-+.. ++|...|.+++.+..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 999999999999999999999999999999999986 8999999999999999988765444 6789999999988765
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeee--eecCCccEEEEEEecCCCEEEEEecCCeEEEe---------cCCCcceeEecC
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK---------IGREEPVASMDN 310 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~---------~~~~~~~~~~~~ 310 (915)
.+++.+.|.++++.++........ +.....+ .+++..+++..+++.+.++.+.+. ++-..+..++.+
T Consensus 376 -~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 376 -ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred -cEEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 467778888999998764433222 2333333 388888888888888888887775 233455667777
Q ss_pred CCcEEEEe--eCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc
Q 002496 311 SGKIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR 387 (915)
Q Consensus 311 ~g~~~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~ 387 (915)
++..+... +..++++.+.. +.... .-.+..+...++.+++||||.+||+|. .+.+.+|+......+
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g---------~~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSG---------DELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred CCCEEEEecccceEEEEEecC---------Ccccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 77777664 34456655433 22111 111245677899999999999999998 899999988765432
Q ss_pred ------CccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceee-----cCcEEEEeeCC-eEEEEecc
Q 002496 388 ------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY-----GGTLLAMCSND-FICFYDWA 454 (915)
Q Consensus 388 ------~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~-----~g~~La~~~~~-~v~~~d~~ 454 (915)
+...+.+++|||+++.+++++ |..|.||+++.+....+....++..+. +...|++.+.| .|++|.+.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 346889999999999999999 999999998877665333344444433 56788888888 99999863
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.5e-39 Score=335.33 Aligned_cols=434 Identities=19% Similarity=0.287 Sum_probs=357.3
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|+|+.-+|+...||+|-.||.|+||+..++....++.+|...|+++.|+..|..|++|+.|+.|.+||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999887778889
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002496 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
.+|.+.|+.+-|..+.+++++++.|+.|++||+++. .+..+...|.+.++.+++.+ +.+++++.|+.+++|++...
T Consensus 146 ~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred ecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecc
Confidence 999999999999998899999999999999999998 88888889999999999975 78999999999999997100
Q ss_pred ------------------------CC------------------------------------------------------
Q 002496 176 ------------------------DP------------------------------------------------------ 177 (915)
Q Consensus 176 ------------------------~~------------------------------------------------------ 177 (915)
+.
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ----------------------------------------------------------------ceEEecCCCCeeEEEE
Q 002496 178 ----------------------------------------------------------------NFTLDAHQKGVNCVDY 193 (915)
Q Consensus 178 ----------------------------------------------------------------~~~~~~~~~~v~~~~~ 193 (915)
...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0122345666777777
Q ss_pred EeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc
Q 002496 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (915)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (915)
+.+.. ++..+..+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+..++.+...|.+.
T Consensus 382 S~d~~---~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga 456 (888)
T KOG0306|consen 382 SSDSI---LLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA 456 (888)
T ss_pred ecCce---eeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence 76553 44445567999999999999999974 37889999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002496 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 274 v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
+|+++.+||+..+++|+.|.+|.+|....... .....+. ++.+ ...+.+ ..+
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k---------~lsl---------~~~rtL--------el~ 508 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKK---------VLSL---------KHTRTL--------ELE 508 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCcccce---------eeee---------ccceEE--------ecc
Confidence 99999999999999999999999984221100 0000000 0110 111111 123
Q ss_pred cCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccce-eee
Q 002496 354 LYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK-RSV 425 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~~-~~~ 425 (915)
..+.++.+||||++||++- |+++.+|.+...+ ..+.-++.++..|||++.+++++ |..|+||-++|..- +++
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 3567999999999999998 9999999766543 22445789999999999999999 89999999887542 222
Q ss_pred e--------cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 426 R--------PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 426 ~--------~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
. ..|-|+ ..++.+++.+ .|+.||-+.-+.++.+.+ .|++++.+|+|.++++++.|..+++|
T Consensus 589 fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 1 156666 7777788888 999999988888888874 89999999999999999998888777
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-38 Score=327.46 Aligned_cols=463 Identities=15% Similarity=0.267 Sum_probs=373.6
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
...+.+++++.+||+..|+++.....+++|++.+++.++.++. |++||..++|+|.+..+++|+.|+.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456799999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCCCE--EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEE
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPY--VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (915)
.+.|++|.+.|.++.|+|+-.+ |++|..|+++++||+.....+...+..|.+.|+++.|++ ++..+++++.|..+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEE
Confidence 9999999999999999997654 789999999999999977667788889999999999999 8999999999999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeC---CCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEE
Q 002496 170 WNLGSPDPNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIII 245 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~ 245 (915)
||+.+.+...++. ....+-++.+-++ +++.++++.+.+|.+++||..+++++...... ...+..+...+....++
T Consensus 219 wd~~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 219 WDLVQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred eehhhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 9997766665554 3445666666665 22348999999999999999998876654433 23366666666555666
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEe-cCCCEEEEEecCCeEEEec----------CCCcceeEec--CCC
Q 002496 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI----------GREEPVASMD--NSG 312 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~v~i~~----------~~~~~~~~~~--~~g 312 (915)
..+.|..+.++|..+.++...+-+..+.|.+++|- |..+++++++..+.++++. ++...+.+++ .+|
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 66778899999999999999998888999998864 5678999999999999863 4445566665 455
Q ss_pred cEEEEe--eCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEEc-CCcEEEEEeecccc--
Q 002496 313 KIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVCG-DGEYIIYTALAWRN-- 386 (915)
Q Consensus 313 ~~~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~~-~~~~~i~~~~~~~~-- 386 (915)
..+.+. ++.++... +.++............|...+..++++..|- ++++++ |..+.+|.....+.
T Consensus 378 ~llat~sKD~svilWr---------~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWR---------LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred cEEEEecCCceEEEEE---------ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 444442 23333332 3333333334444566777888999987764 566555 99999998765211
Q ss_pred ------------cCccceeEEEEecCCcEEEEec-CCeEEEeccCc-------cceee-e-ecCcccceeecCcEEEEee
Q 002496 387 ------------RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-------QEKRS-V-RPTFSAERIYGGTLLAMCS 444 (915)
Q Consensus 387 ------------~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~-------~~~~~-~-~~~~s~~~i~~g~~La~~~ 444 (915)
.+-..|.+++.+|+.+++++++ |.+.+||+++. .+++. + ...|++. .++|++++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~----dq~laT~S 524 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN----DQLLATCS 524 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc----cceeEecc
Confidence 1235678999999999999999 89999999662 22222 1 1278887 89999999
Q ss_pred CC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 445 ND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 445 ~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
.| +|++|.+++..++.+++| .|-.+.|-.+|+.|++++.++++.+|
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99 999999999999999996 68888999999999999999999887
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=311.02 Aligned_cols=429 Identities=15% Similarity=0.228 Sum_probs=349.7
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--- 89 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~--- 89 (915)
.+...|++++.||+|.+|++....|...+-++.....++.+. .+.+|.|+.|||||+++|+|.. +.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN 130 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc
Confidence 466789999999999999999999999999988887777776 5678999999999999988865 57999986432
Q ss_pred -----ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 90 -----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 -----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
...+++.+|.+.|.++.|+.|.++|++|+.|.++++|+++..+. ....+.+|..+|..+.|.. +...+.+.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEEEEec
Confidence 23456678999999999999999999999999999999986532 3567889999999999998 8888999999
Q ss_pred CCcEEEEECCC-----------------------CCC-----c------eEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002496 164 DRTIKIWNLGS-----------------------PDP-----N------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 164 dg~i~v~d~~~-----------------------~~~-----~------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
||.+.+|.... ++. . .-+......|++.+|++..+ +|++|...|
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~--~lvvgFssG 287 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN--LLVVGFSSG 287 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce--EEEEEecCC
Confidence 99999998751 111 0 01122336789999998877 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEE
Q 002496 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
...+|.+....+++.+.-...+|..++|+..|.+|+.|+.. |.+-+|+..+...+...++|..++.+++++|||+++|+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999999999999999888999999999999999998865 89999999988888889999999999999999999999
Q ss_pred EecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002496 289 GYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 289 ~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
|++||.|.+|..... -++. .+..|...++.+.|+..|+.+
T Consensus 368 G~eDgKVKvWn~~Sg------------------------------------fC~v----TFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSG------------------------------------FCFV----TFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ccCCCcEEEEeccCc------------------------------------eEEE----EeccCCCceEEEEEEecCCEE
Confidence 999999999732221 1111 124566678899999999999
Q ss_pred EEEc-CCcEEEEEeeccccc------CccceeEEEEecCCcEEEEec-C-CeEEEeccCccceee---------eecCcc
Q 002496 369 VVCG-DGEYIIYTALAWRNR------SFGSALEFVWSSDGEYAVRES-S-SKIKIFSKNFQEKRS---------VRPTFS 430 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~~------~~~~~~~~~~s~~g~~l~~~~-~-~~i~v~~~~~~~~~~---------~~~~~s 430 (915)
.+.+ ||++..|++...++- ...+..+++..|.|..++.++ + =.|+||+++...... ....|+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 9888 999999998876532 234557888888899988888 4 469999976433221 122688
Q ss_pred cceeecCcEEEEeeCC-eEEEEeccCC-cEEEEEE--ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 431 AERIYGGTLLAMCSND-FICFYDWAEC-RLIRRID--VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 431 ~~~i~~g~~La~~~~~-~v~~~d~~~~-~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
|+ +.+|++++.| +|++||+-.. ..+.+++ ..+..+.|.|||+.||+++-++.+-+|
T Consensus 488 ~~----~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 488 PD----GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred cc----cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 98 9999999999 9999998533 3444444 478999999999999999988666554
No 15
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=312.12 Aligned_cols=686 Identities=15% Similarity=0.195 Sum_probs=448.8
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEE-EeC-------CCCEE
Q 002496 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAK-FVA-------RKQWV 72 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~-~s~-------~~~~l 72 (915)
|.++..+.++- .|+..|.|+.|+.+...+.++ .|..+.+|+--+..........+.-|.... .-+ ....+
T Consensus 1 mklk~~~~~k~-r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 1 MKLKTRICKKN-RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred Cccchhhhhcc-ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceE
Confidence 55666655554 688899999999988766555 466676765444333222222221111111 111 23578
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEec
Q 002496 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 73 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
+.++.||.+.+.+ +.++..+.+.+|.+.|.+-.|+|+|.-|+++++||.|++|.-. | .+..++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-MLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-MLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-hHHHHHhhcCceeEEEEECC
Confidence 9999999999988 4567778889999999999999999999999999999999854 3 45555556677899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCe
Q 002496 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i 232 (915)
+.++.+.+.+ +.+.+=.+.....+...+.|.+-|.++.|++.++ ++++|+.|-..++||.. |..+..-..|..+|
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc--ceeecCCceeEEeeccc-CcccccCChhccce
Confidence 5555555543 6777777777777788899999999999999887 89999999999999965 88888888899999
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCC
Q 002496 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g 312 (915)
++++|.|+ ..++.++.+ ++|+= ....+.|..++||+||..+++|+..|.+.+--.-+... ...++
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l--~~~n~ 295 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQL--VSGNL 295 (737)
T ss_pred eeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhh--hhccc
Confidence 99999999 667777654 55521 22346789999999999999999999998721111000 01122
Q ss_pred cEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccce
Q 002496 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA 392 (915)
Q Consensus 313 ~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~ 392 (915)
+........+.+.++.+... ...+.+-+.+.++-.-.+|++++..++++|....|+....-..
T Consensus 296 ~~t~~~r~~I~vrdV~~~v~-----------------d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidg 358 (737)
T KOG1524|consen 296 KATSKSRKSITVRDVATGVQ-----------------DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDG 358 (737)
T ss_pred eeEeeccceEEeehhhhhHH-----------------HHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEec
Confidence 33333333333333221110 0111122344555666789999999999998888764421100
Q ss_pred e--EEEEecCC-cEEEEecCCeEEEeccCccceeeeec------Ccccceee-cCcEEEEeeCC---eEEEEec-cCCcE
Q 002496 393 L--EFVWSSDG-EYAVRESSSKIKIFSKNFQEKRSVRP------TFSAERIY-GGTLLAMCSND---FICFYDW-AECRL 458 (915)
Q Consensus 393 ~--~~~~s~~g-~~l~~~~~~~i~v~~~~~~~~~~~~~------~~s~~~i~-~g~~La~~~~~---~v~~~d~-~~~~~ 458 (915)
. ....--.+ ++.......++.+|..+.+.+...+. ..+...+. +...|+...+. .+.+||. .+|+.
T Consensus 359 re~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~ 438 (737)
T KOG1524|consen 359 REDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKR 438 (737)
T ss_pred cccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcc
Confidence 0 00000111 23333334456665433322221111 01111111 35567776543 8889998 77765
Q ss_pred EEE-----EEccccEEEEc----CCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeE
Q 002496 459 IRR-----IDVTVKNLYWA----DSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529 (915)
Q Consensus 459 i~~-----~~~~i~~v~~s----~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~ 529 (915)
... .+..|..++.+ ++.+.+++.+..+-+.+..-+ .+ |.+ +.+..++..+.+.+
T Consensus 439 qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK-----rf---------gke---e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 439 QGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK-----RF---------GKE---EEIYKIGTMVHTLA 501 (737)
T ss_pred cCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh-----hc---------Cch---hhhhhhhhhhhhhh
Confidence 432 12244445544 355677877776655443100 00 111 11122455666677
Q ss_pred Eec--CEEEEEccCC-eEEEEECCEEe-------EEE-----ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHH
Q 002496 530 WVG--DCFIYNNSSW-RLNYCVGGEVT-------TMF-----HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIE 594 (915)
Q Consensus 530 w~~--~~~i~~~~~~-~l~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 594 (915)
|.+ ++++-..+.. .+.||.+.-.. ++. .+.+...+..| -++.+.+...+|.+.-..+ ..
T Consensus 502 wndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqvtirrsdG~LlpisV----~p 575 (737)
T KOG1524|consen 502 WNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQVTIRRSDGALLPISV----NP 575 (737)
T ss_pred hccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEEEEEeccCceEeeec----cc
Confidence 876 4555444421 23444322111 111 11122233333 3555555555554433222 22
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHH
Q 002496 595 YKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQL 674 (915)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~l 674 (915)
|..-+ .+ ++.-++|++|.++|+...+..+|..|
T Consensus 576 y~~iL-----------------------~e------------------------~~sssKWeqavRLCrfv~eqTMWAtl 608 (737)
T KOG1524|consen 576 YPEIL-----------------------HE------------------------YLSSSKWEQAVRLCRFVQEQTMWATL 608 (737)
T ss_pred cHHHH-----------------------HH------------------------HhccchHHHHHHHHHhccchHHHHHH
Confidence 22111 00 13456799999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchH
Q 002496 675 GELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPE 754 (915)
Q Consensus 675 a~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~ 754 (915)
|.+|..+.++.++|.+|..+++.+++..+.......++-.++|+.....|+...|..+++.-|.+.+|+.+-+++..|..
T Consensus 609 Aa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~R 688 (737)
T KOG1524|consen 609 AAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRR 688 (737)
T ss_pred HHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999999999888777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHH
Q 002496 755 AALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAV 808 (915)
Q Consensus 755 A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 808 (915)
|++++.+|. ..++.+++..+++|+.-+++ +...+|..|...+|+
T Consensus 689 ALEl~~K~K-~~v~~Vl~yR~KyLk~~g~~---------EtdplyL~~~~~~ei 732 (737)
T KOG1524|consen 689 ALELSQKHK-ELVPRVLQYRRKYLKALGRE---------ETDPLYLPLVAKEEI 732 (737)
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHhccc---------ccCchhhhhhhhccc
Confidence 999999997 67888889999998866544 444556655544443
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=296.70 Aligned_cols=294 Identities=21% Similarity=0.346 Sum_probs=259.7
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCC-----CceeEEEEecCCCEEEEEEeCCCCEEEE
Q 002496 1 MPLRLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVA 74 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~V~~v~~sp~~-~~la~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 74 (915)
|+-.+.+.-++.+|++.|+.++..+.+ ..+++++.|..+.+|++.. |..++.+.+|...|..+..+++|++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 555677888999999999999999975 4677888899999998754 6778999999999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCC
Q 002496 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 75 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|+.-+.......-..+...|.|++|+|..
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999988733333323347899999999943
Q ss_pred -CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeE
Q 002496 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 155 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+|++++.|++|++||+++.+....+.+|.+.++.+.++|+|. +.++|+.||.+.+||++.++.+.++. +...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence 77999999999999999999999999999999999999999998 79999999999999999999988887 788999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC---------CccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG---------LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+++|+|+...|+.+. +..|+|||+.++..+..++.. .....+++|+++|+.|..|..|+.|++|
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 999999976666554 557999999998877665432 2345789999999999999999999997
No 17
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=310.46 Aligned_cols=625 Identities=20% Similarity=0.262 Sum_probs=399.5
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002496 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+..+..+|.++.|+|...+++++-.+|.|.|||++|...++.+.-..-+|++..|-+..+.+++|++|+.|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34555888999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002496 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
. .....+..|...|.+++.+| ...+++++|.|-+|++||-... .+.+++.+|...|.+++|+|.... .+++++-|+
T Consensus 87 ~-ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFaS~sLDr 163 (794)
T KOG0276|consen 87 G-EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFASASLDR 163 (794)
T ss_pred c-eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ceeeeeccc
Confidence 8 77889999999999999999 7889999999999999998764 466788999999999999998765 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCC--CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002496 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
+|++|.+.+..+..++++|...|.++.+-+.| ++|++|+.|..|++||..|..+++++.+|...|..+.|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998855 6999999999999999999999999999999999999999999999
Q ss_pred EEecCCeEEEecCCCcc-----------eeEe---cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002496 288 IGYDEGTIMVKIGREEP-----------VASM---DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 288 ~~~~dg~v~i~~~~~~~-----------~~~~---~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
+|+.||++++|-...-. ++++ ..++++..-.+....++++ |+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l-----------gr------------- 299 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL-----------GR------------- 299 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc-----------cC-------------
Confidence 99999999999543321 2211 1222222222222222211 11
Q ss_pred cCCceEEECCCCCEEEEEcCCc--EEEEEeecc-----------cccCccce----eEEEEecCCcEEEEecCCeEEEec
Q 002496 354 LYPQSLKHNPNGRFVVVCGDGE--YIIYTALAW-----------RNRSFGSA----LEFVWSSDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~~~~--~~i~~~~~~-----------~~~~~~~~----~~~~~s~~g~~l~~~~~~~i~v~~ 416 (915)
....+..+++|+.+-...+.- +.+..+... ..+..|.+ ..++-||+|+++++..+|.-.||.
T Consensus 300 -eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 300 -EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred -CCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 112445555555443322111 111111111 11222332 467789999999999999988885
Q ss_pred ------cCccceeeeecCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEEccccEEEEcCCCCEEEEEeCCeEEEE
Q 002496 417 ------KNFQEKRSVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 417 ------~~~~~~~~~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
+.+..-..+ .|++| ..-.|+..++ .|.++ .+.+....++.... ...--.|.+|...+.+.++++
T Consensus 379 ala~RnK~fG~~~eF--vw~~d----sne~avRes~~~vki~--knfke~ksi~~~~~-~e~i~gg~Llg~~ss~~~~fy 449 (794)
T KOG0276|consen 379 ALALRNKAFGSGLEF--VWAAD----SNEFAVRESNGNVKIF--KNFKEHKSIRPDMS-AEGIFGGPLLGVRSSDFLCFY 449 (794)
T ss_pred eeehhhcccccceeE--EEcCC----CCeEEEEecCCceEEE--ecceeccccccccc-eeeecCCceEEEEeCCeEEEE
Confidence 112211122 34555 5567777655 77777 56666665543222 222345778888888888876
Q ss_pred EecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecC-EE-EEEccCC-eEEEEE---------CCEEeE---
Q 002496 490 KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGD-CF-IYNNSSW-RLNYCV---------GGEVTT--- 554 (915)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~-~~-i~~~~~~-~l~~~~---------~~~~~~--- 554 (915)
+... -..+..++...+...|.++ .| ...++.. .+.-+. .+....
T Consensus 450 dW~~---------------------~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeG 508 (794)
T KOG0276|consen 450 DWES---------------------GELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEG 508 (794)
T ss_pred Eccc---------------------ceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchh
Confidence 5221 2334455666677778764 22 2222211 011010 000000
Q ss_pred -------EEecccceE-------EEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCH-HHHhhhcCCCCcchH
Q 002496 555 -------MFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDL-ERANEILPSIPKEHH 619 (915)
Q Consensus 555 -------~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~l~~i~~~~~ 619 (915)
+......+. ..=|....+|+...=-......++++-........ .+++. -.+.+-+.-+.-.-.
T Consensus 509 iedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~-~~~~rvYL~Dke~nVi~y~l~ 587 (794)
T KOG0276|consen 509 IEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYV-ANDNRVYLHDKELNVISYKIL 587 (794)
T ss_pred HHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeee-ecCCEEEEeecccceEeEeee
Confidence 000000000 00011122333211122222333332211110000 00000 000000000000000
Q ss_pred HHHHHH--HHhCCChhhhhhcc----cCcccee-eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHH
Q 002496 620 NSVARF--LESRGMIEEAIEVA----TDPDYRF-ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMK 692 (915)
Q Consensus 620 ~~~~~~--~~~~~~~~~al~~~----~~~~~~f-~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~ 692 (915)
-.+.+| +.-.+.++.|..+. ++...+. .+.-.+|.-++|++++...+ +-=+.|++.|++++|
T Consensus 588 l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d------~rFelal~lgrl~iA----- 656 (794)
T KOG0276|consen 588 LEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPD------QRFELALKLGRLDIA----- 656 (794)
T ss_pred hHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChh------hhhhhhhhcCcHHHH-----
Confidence 011111 11223334443321 1111111 22335677777777763322 222457778888888
Q ss_pred HcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002496 693 QAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (915)
Q Consensus 693 ~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (915)
..|.....+..+.+.|++.+...++..+|.+|+....|+..-.=++..+|.-+
T Consensus 657 --------~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 657 --------FDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred --------HHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 66667777777788999999998988888888888777777776666666544
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=323.54 Aligned_cols=473 Identities=15% Similarity=0.173 Sum_probs=369.4
Q ss_pred hhhhhccc-CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002496 6 EIKRKLAQ-RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (915)
Q Consensus 6 ~~~~~l~~-h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~dg~i~ 82 (915)
++.+.+.. |.+||.-|+|+|.+..|++|+.||.|+|||+..+.+...|.+|.+.|.++.|+|+-. .|++|..|+.++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 56677777 999999999999999999999999999999999999999999999999999999754 488999999999
Q ss_pred EEECCCCce-eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCC-----CC
Q 002496 83 VYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD-----TN 156 (915)
Q Consensus 83 vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~-----~~ 156 (915)
+||+++... +..+..|.+.|+++.|++++..+++++.|..+.+||+.+. +...++.- ...+-++.+-+ + +.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~-~~l~~lp~-ye~~E~vv~l~-~~~~~~~~ 251 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY-KKLKTLPL-YESLESVVRLR-EELGGKGE 251 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh-hhhheech-hhheeeEEEec-hhcCCcce
Confidence 999996555 7778899999999999999999999999999999999654 33333332 23466666665 3 56
Q ss_pred EEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEE
Q 002496 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 157 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i 235 (915)
++.+.+.+|.+++||..+++........ ...+..+...+... .++....+..+.++|.++.+....+-+....|..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~--~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS--QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC--ceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 9999999999999999988766544322 22355555555544 37777788999999999999999999999999999
Q ss_pred EEe-CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC--------------
Q 002496 236 CFH-PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG-------------- 300 (915)
Q Consensus 236 ~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~-------------- 300 (915)
+|- |+.+++++++..+.+|+|+..+..+. .+.+|...|.++....+|-+|++|+.|.++++|-.
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 874 67789999999999999998876665 78899999999997778899999999999999932
Q ss_pred -CCcc--eeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeee-eecCCcccCCceEEECCCCCEEEEEc-CCc
Q 002496 301 -REEP--VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCG-DGE 375 (915)
Q Consensus 301 -~~~~--~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~-~~~ 375 (915)
+... .+++...+--++...+.-.++.++..... -.+..++.+.. .....|+..+.+++++|+.+++|+|+ |.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s--~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS--KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCc--ccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 1111 22233334444444444444554443321 01111111111 11245777899999999999999999 899
Q ss_pred EEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCc-------cceee--eecCcccceeecCcEE
Q 002496 376 YIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-------QEKRS--VRPTFSAERIYGGTLL 440 (915)
Q Consensus 376 ~~i~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~-------~~~~~--~~~~~s~~~i~~g~~L 440 (915)
..||+....+ ..+...+.++.|++..+.+++.+ |.+|+||.++. .++.. ++..|-.+ |..|
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~ql 562 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQL 562 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEE
Confidence 9999877443 22445789999999999999998 89999998652 22221 23355444 7777
Q ss_pred EEeeCC-eEEEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 441 AMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 441 a~~~~~-~v~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
+++..+ -+++|++.++++++.++. .|+.+.-++.+.++++++.|+.+++|
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 777777 999999999999998874 89999999999999999999999887
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=317.19 Aligned_cols=282 Identities=23% Similarity=0.376 Sum_probs=257.9
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCe
Q 002496 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 55 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
+.+.||..+.|+++++.|+||+.+|.++||+..+...+..+.+|...+.++.|+|. +..+++|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 45679999999999999999999999999999999999999999999999999997 568999999999999999987
Q ss_pred eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002496 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.....+.+|...|..++|+| +|.+|++++.|.+-++||+.++.......+|..+|.+++|.++|. ++++|+.|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc--eeeccCccchhh
Confidence 77888999999999999999 999999999999999999999999888899999999999999998 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec-CCCEEEEEec
Q 002496 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 291 (915)
|||+++|.++..+.+|..+|.+++|+|+|-.|++||.|++++|||++..+.+.++..|..-|..+.|+| .|.+|++++.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 6899999999
Q ss_pred CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002496 292 EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 292 dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
|+++.+|....- + .++.+..|+..|-++.+++||++++++
T Consensus 409 D~t~kiWs~~~~------------------------------------~----~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 409 DNTVKIWSTRTW------------------------------------S----PLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred CcceeeecCCCc------------------------------------c----cchhhcCCccceEEEEeccCCceEEEe
Confidence 999999843321 1 123356677777788888888888877
Q ss_pred c-CCcEEEEE
Q 002496 372 G-DGEYIIYT 380 (915)
Q Consensus 372 ~-~~~~~i~~ 380 (915)
+ |.++.+|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 7 77777763
No 20
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-36 Score=317.86 Aligned_cols=663 Identities=20% Similarity=0.312 Sum_probs=408.8
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
.+..+|..|.++|+.++|||+++++++|+.|-.|+||++++.+++.++.+|-.-|+.+.|++.-.||+++|+|.+|+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------------------------eeEEEE
Q 002496 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------WMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~ 137 (915)
+.+++++..+.+|...|.|..|+|....++++|-|.+|++||+..- ..+..+
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999997531 234567
Q ss_pred eecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
+.+|...|..++|+| .-.+|++|+.|+.|++|.++..+. +-+..+|...|.++-|+|..+ ++++.+.|++|++||
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEe
Confidence 889999999999999 788999999999999999865442 345678999999999999777 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC------CccEEEEEEecCCCEEEEE
Q 002496 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG------LERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~ 289 (915)
+...+.+++++......+.++.+|..+++++|. |+-+.+|.+..-++...+... ...+....+..... .++.
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d-~~v~ 356 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD-TAVA 356 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc-ceeE
Confidence 999999999988888999999999999887765 555667766533332222211 12233333332111 1111
Q ss_pred ecCCeEEEecCCCcceeEecCC-CcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002496 290 YDEGTIMVKIGREEPVASMDNS-GKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 290 ~~dg~v~i~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
.-.+.-..| ......++++. +.++..+......+.+-..... .+|..- .++. ........+-...+ ++.
T Consensus 357 ~lr~~g~~~--~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~---~~~~~~---~~~~-~k~tG~~a~fvarN-rfa 426 (1202)
T KOG0292|consen 357 SLRRPGTLW--QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD---SDGVSD---GKDV-KKGTGEGALFVARN-RFA 426 (1202)
T ss_pred eccCCCccc--CCcceeeeccccCeEEEEeccCCCeEEEEEecCc---ccccCC---chhh-hcCCCCceEEEEec-ceE
Confidence 100000000 11111222221 2222221111111111111100 011100 0000 00000112222222 222
Q ss_pred EEEc-CCcEEEEEeeccccc---CccceeEEEEecCCcEEEEecCCeEEEeccCcccee-eeec------CcccceeecC
Q 002496 369 VVCG-DGEYIIYTALAWRNR---SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKR-SVRP------TFSAERIYGG 437 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~~---~~~~~~~~~~s~~g~~l~~~~~~~i~v~~~~~~~~~-~~~~------~~s~~~i~~g 437 (915)
+.-. +.++.+-+......+ ....+..+-+..+|.+++. +...|.+||++.+... ++.. .+|.+ .
T Consensus 427 vl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~~s~vkyvvws~d----m 501 (1202)
T KOG0292|consen 427 VLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSND----M 501 (1202)
T ss_pred EEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEecCceeEEEEcCc----c
Confidence 2222 222322222211111 1123445555566665554 4456888887654322 1221 55666 7
Q ss_pred cEEEEeeCCeEEEEeccCCcEEEEEE--ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccce
Q 002496 438 TLLAMCSNDFICFYDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 438 ~~La~~~~~~v~~~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 515 (915)
.++|.-+..+|.+++. .-+++..+. ..|++-+|..+|-++-+..+.-.|- +. .++.|..+..
T Consensus 502 ~~vAll~Kh~i~i~~k-kL~l~~sihEtiriksgawde~gVfiYtT~nHikYa-----------l~----~GD~GIikTL 565 (1202)
T KOG0292|consen 502 SRVALLSKHTITIADK-KLELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYA-----------LE----NGDSGIIKTL 565 (1202)
T ss_pred chhhhcccceEEEEec-chhheecchheeEeeeceeccCceEEEEehhhhhhh-----------hc----cCCcceEEec
Confidence 7888888888888884 344555544 4788889998887766655442222 11 1223333222
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEe-EEEecccceEEEEEE------------eeCCEE-------E
Q 002496 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVT-TMFHLDRPMYLLGYL------------ASQSRV-------Y 575 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~l-------~ 575 (915)
+. .+.+..-. +...||.+.+.. .+.+.+...|.++.. .+...+ |
T Consensus 566 d~---------------~iyitkv~-gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaY 629 (1202)
T KOG0292|consen 566 DK---------------PIYITKVK-GNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAY 629 (1202)
T ss_pred cc---------------ceEEEEee-CCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHH
Confidence 11 11222222 333344322211 111222111110000 000000 0
Q ss_pred EEecCCce-EEEE-ecchHHHHHHHHHccCHHHHhhhcCCCCcchH-HHHHHHHHhCCChhhhhhcccCccceeeeeccc
Q 002496 576 LIDKEFNV-MGYT-LLLSLIEYKTLVMRGDLERANEILPSIPKEHH-NSVARFLESRGMIEEAIEVATDPDYRFELAIQL 652 (915)
Q Consensus 576 ~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l 652 (915)
+. ++|-. +... +.-.-.+|..+++.|+++.|.+..+.+..+.+ .++. +-||..
T Consensus 630 Lq-KkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLg-----------------------e~Al~q 685 (1202)
T KOG0292|consen 630 LQ-KKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLG-----------------------EEALRQ 685 (1202)
T ss_pred HH-hcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHH-----------------------HHHHHh
Confidence 11 11100 0000 01123345555555555555444333333222 1111 334566
Q ss_pred CCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHH
Q 002496 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVA 729 (915)
Q Consensus 653 ~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a 729 (915)
|+-+.|.-+.++. .-|..|.-.++-.|+.+.-.++...+ +|..+......-+|| +++..++....|...+|
T Consensus 686 gn~~IaEm~yQ~~---knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~d---v~ervkIl~n~g~~~la 759 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRT---KNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGD---VKERVKILENGGQLPLA 759 (1202)
T ss_pred cchHHHHHHHHHh---hhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhcc---HHHHHHHHHhcCcccHH
Confidence 6766666655543 45888888888888888888887766 477676666777888 88889999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHCC
Q 002496 730 FLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~ 750 (915)
...+.-.|.-++|.++..+.+
T Consensus 760 ylta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 760 YLTAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHhhcCcHHHHHHHHHhhc
Confidence 999999999999998888766
No 21
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.8e-37 Score=316.75 Aligned_cols=711 Identities=11% Similarity=0.112 Sum_probs=451.2
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---------------TMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 78 (915)
......|++|+....++|+|+.||.++|..+.+. ...+++.+|+..|..+.|+.+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999987653 2346788999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEE--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCC
Q 002496 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (915)
|.|.||-+-.|.....+ ....+.|.+|+|+.+|..|++...||.|.+-.+++++...+.+.+.. ...+.|++ |..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~-D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSE-DLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecc-cHH
Confidence 99999998777654333 23456799999999999999999999999999988755555554432 35788999 888
Q ss_pred EEEEEECCCcEEEEECCCCC-------C----ceEEecCCCCeeEEEEEeC------CCcCEEEEEeCCCeEEEEECCCC
Q 002496 157 TFASASLDRTIKIWNLGSPD-------P----NFTLDAHQKGVNCVDYFTG------GDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 157 ~l~~~~~dg~i~v~d~~~~~-------~----~~~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.++.+-.+|.+.+||....- + .-.+......+..+.|... .+.+.++++..+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888889999999975421 0 0111223344667777643 25668999999999999876654
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcC---------CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
.....+.. .-.+..+.|+++|..|+++|.+ +.|.+|. .-|..+.+++.+...|++++|-..|-.++.+-
T Consensus 250 ~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 44333432 3568899999999999998864 2577776 44788899999999999999999888888765
Q ss_pred cCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002496 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
|+.+.+-.-++.-.+.......++.....+..
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p----------------------------------------------- 359 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELP----------------------------------------------- 359 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCc-----------------------------------------------
Confidence 45555522222211111111111100000000
Q ss_pred EcCCcEEEEEeeccc--ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccceeeeecCcccceeecCcEEEEeeCCe
Q 002496 371 CGDGEYIIYTALAWR--NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDF 447 (915)
Q Consensus 371 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~ 447 (915)
.-.+.+|+..... .+......+++++.+-..++... ++.+.-++. .. .++.. ..|..+.
T Consensus 360 --~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~-le-------~~~~~-----~~l~LCN--- 421 (1189)
T KOG2041|consen 360 --QYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYST-LE-------NRSRV-----YFLQLCN--- 421 (1189)
T ss_pred --ceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhh-hh-------cccce-----EEEeeec---
Confidence 1123344443321 12222334445544444444333 333333210 00 01110 0000000
Q ss_pred EEEEeccCCcEEEEEEccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhC------CC----CCCccccccc---
Q 002496 448 ICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDS------GK----PVDEQGVEDA--- 514 (915)
Q Consensus 448 v~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~--- 514 (915)
+-|..+..--..|+-....-+|..+++++.+.+++|.|........+.. +. ..++......
T Consensus 422 ------SIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 422 ------SIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred ------ccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 0000000000112222223456677888888888887754433322211 11 1111101111
Q ss_pred -eeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEec--ccceEEEEEEeeCCEEEEEecCCceEEEEecc-
Q 002496 515 -FELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHL--DRPMYLLGYLASQSRVYLIDKEFNVMGYTLLL- 590 (915)
Q Consensus 515 -f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~- 590 (915)
-..+......|+..+..+.+|+....+|.++-+..........+ ....|.+.+.++.+|+.++|-.|.+..+.++.
T Consensus 496 s~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d 575 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYD 575 (1189)
T ss_pred cceeeccCCCcceeeeecceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccc
Confidence 12222345678888888999999999899887765555555544 45678888999999999999998887777753
Q ss_pred ---hHHHHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHh------------------------------CCChhhhhh
Q 002496 591 ---SLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLES------------------------------RGMIEEAIE 637 (915)
Q Consensus 591 ---~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~------------------------------~~~~~~al~ 637 (915)
..+..-...+++|.|+-.=.-.+ ..+-.+.++ .-..++-+.
T Consensus 576 ~~g~ql~~~~~~errDVWd~~Wa~dN------p~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~ 649 (1189)
T KOG2041|consen 576 FDGDQLKLIYTSERRDVWDYEWAQDN------PNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILL 649 (1189)
T ss_pred cCcceeeeeehhhhhhhhhhhhccCC------chHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhHhc
Confidence 11121234558888881100000 000001111 011111221
Q ss_pred cccCcccee------------eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHH
Q 002496 638 VATDPDYRF------------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYS 705 (915)
Q Consensus 638 ~~~~~~~~f------------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~ 705 (915)
..+.|.... .-.+....+++|.+++...+++.+|+.||++|+.+.+++.|+.+|.|++||.|+.+
T Consensus 650 ~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~--- 726 (1189)
T KOG2041|consen 650 TPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL--- 726 (1189)
T ss_pred CcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH---
Confidence 222222111 12355667899999999999999999999999999999999999999999999988
Q ss_pred hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC-hh
Q 002496 706 SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN-PK 784 (915)
Q Consensus 706 ~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~-~~ 784 (915)
|++|..+..+ ......+..+.|+|+||+++|++++|.+.|++|+.+++.+. +++++.+.--.... +-
T Consensus 727 -------vkrl~~i~s~---~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwf--rV~qL~r~g~~d~dD~~ 794 (1189)
T KOG2041|consen 727 -------VKRLRTIHSK---EQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWF--RVYQLIRNGGSDDDDEG 794 (1189)
T ss_pred -------HHHhhhhhhH---HHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHH--HHHHHHHccCCCcchHH
Confidence 5555555443 23334444578999999999999999999999999998754 67777766322221 22
Q ss_pred hhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCccc
Q 002496 785 AAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (915)
Q Consensus 785 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (915)
.-.+..+.+++ |.+..++.++.++|.........+++|
T Consensus 795 ~e~A~r~ig~~---fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 795 KEDAFRNIGET---FAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 33333333455 888888999999998887776677666
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-37 Score=306.46 Aligned_cols=322 Identities=22% Similarity=0.325 Sum_probs=278.9
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCC----ceeEEEE----------ecCCCEEEEEEeCCCCEEEEEeC
Q 002496 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQ----TMAKSFE----------VTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~----~~~~~~~----------~~~~~v~~l~~s~~~~~l~~~~~ 77 (915)
.|..+|.+.+|+|-.. .+++|+.+-..++|++... .....++ .....|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999666 8999999999999998741 1111111 12357999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCE
Q 002496 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
||.+++|+. +|..+.++..|.++|.++.|+..|.||++++.||++.+||..++ ...+.+.-|..+-..+.|- +...
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~--~~~~ 331 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ--SNDE 331 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe--cCce
Confidence 999999996 47888999999999999999999999999999999999999998 7788888898887889997 5788
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002496 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
|++++.|+.|+++.+....|..++.+|.++|+++.|.|.+. +|+++++|++++||+.....+...+..|...|..+.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 99999999999999999999999999999999999999988 8999999999999999888899999999999999999
Q ss_pred eCCCC---------EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEe
Q 002496 238 HPELP---------IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 238 ~~~~~---------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~ 308 (915)
+|.|+ .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.||.|.+|..+...++.-
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 99774 789999999999999999999999999999999999999999999999999999985544333221
Q ss_pred cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002496 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.. ....+..+.|+.+|..|.++. ++.+.+.++
T Consensus 490 ~~-----------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 YQ-----------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ec-----------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 11 112345788999888887775 777766543
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.2e-37 Score=285.33 Aligned_cols=286 Identities=22% Similarity=0.348 Sum_probs=256.0
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~ 129 (915)
.+++++|.+.|.++.|++|+++|++++.||.+.|||.-|..+++.++.....|..++|+|.|+++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37889999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred CC-----eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEe-CCCcCEEE
Q 002496 130 KG-----WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLI 203 (915)
Q Consensus 130 ~~-----~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~ 203 (915)
+. ....+.+.+|.+++.|+.|.+ .+.|++++.|.+..+||+.+++.+..+.+|.+.|.+++++| +++ .++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n--tFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN--TFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC--eEE
Confidence 43 145667899999999999985 77899999999999999999999999999999999999999 444 899
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC--CccEEEEEEec
Q 002496 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMK 281 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~ 281 (915)
+|+.|+..++||++.+.++++|.+|...|.+++|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999998888777644 45799999999
Q ss_pred CCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEE
Q 002496 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (915)
Q Consensus 282 ~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 361 (915)
.|++|.+|+.|..+.+|.. -.++++. .+..|+..|+++..
T Consensus 284 SGRlLfagy~d~~c~vWDt------------------------------------lk~e~vg----~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDT------------------------------------LKGERVG----VLAGHENRVSCLGV 323 (343)
T ss_pred cccEEEeeecCCceeEeec------------------------------------cccceEE----EeeccCCeeEEEEE
Confidence 9999999999999999731 1122221 14567778889999
Q ss_pred CCCCCEEEEEc-CCcEEEE
Q 002496 362 NPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 362 s~~g~~lav~~-~~~~~i~ 379 (915)
+|||.-|++++ |..+.||
T Consensus 324 s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCCCcEEEecchhHheeec
Confidence 99998888887 7788777
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-37 Score=300.42 Aligned_cols=294 Identities=27% Similarity=0.451 Sum_probs=278.4
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
++.+...+.+|..+|+.+-|+|+...+++++.|++|++||..+|++...+++|...|..++|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 84 YNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ .+...+.+|...|..+..+. |+.++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 99986 5677888899999999999999999999999999999999999 78889999999999999998 999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-------------CcCEEEEEeCCCeEEEEECCCCcEEEEecCCc
Q 002496 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-------------DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (915)
.|.+|++|-+.++++...+..|+.+|-|++|.|.. ..+++.+++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999998888999999999999998742 12489999999999999999999999999999
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
..|..++|+|.|+||+++..|+++++||++++++..++..|..-++++.|..+..++++|+-|.++.+|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999884
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.2e-37 Score=304.49 Aligned_cols=277 Identities=24% Similarity=0.361 Sum_probs=259.4
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|++++|+.+|..||+|..+|.++||+ .+|.++.++..|.+||.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 678899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002496 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
.-|..+-..+.|-.+. .+++++.||.|+++.+... .+..++.+|.+.|.++.|+| .+.+|++++.|+++++|+....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCC
Confidence 9999887888997654 6899999999999999876 77788888999999999999 8999999999999999999888
Q ss_pred CCceEEecCCCCeeEEEEEeCCC-------cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002496 176 DPNFTLDAHQKGVNCVDYFTGGD-------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
.....+..|...|..+.|+|.+. +..+++++.|++|++||+..+.++.++..|..+|.+++|+|+|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88889999999999999999763 33789999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
.||.|.+|+..++++.+.+... +.|..++|+.+|..|.++..||.+.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999998876 66999999999999999999998876
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=303.89 Aligned_cols=281 Identities=27% Similarity=0.475 Sum_probs=252.0
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 95 (915)
-+|..+.|.|+|+.|++|++.|.+.+|+..+-.....+..|+.+|+++.|++++.++++|+.+|.|++|+.+ ...++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 478999999999999999999999999975544444566899999999999999999999999999999975 4556666
Q ss_pred ecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002496 96 EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~ 174 (915)
.+|. ..|++++|+|+...+++||+||+|+|||.... .....+.+|.-.|.++.|+| ...++++|+.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence 6555 89999999999999999999999999999876 55567799999999999999 888999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC-CCEEEEEEcCCcE
Q 002496 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-LPIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~v 253 (915)
+.++.++..|+..|..+.|+++++ +|++++.|..++++|+++.+.++++++|...++++.|+|- ..++.+|+.||.|
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999985 9999999999999999999999999999999999999994 4588899999999
Q ss_pred EEEeCCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 254 RIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 254 ~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
..|.+...+.+..+ ..|...||+++|+|-|..|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998855544443 4577899999999999999999999999999643
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-36 Score=288.07 Aligned_cols=290 Identities=19% Similarity=0.409 Sum_probs=266.2
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
..++.+.+.+|.+-|.|+++.|-..|+++|+.|++|+|||+.+|++..++.+|-..|+.+++|+...++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
||+...+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++. .....+.+|..+|.++.+.| -+..+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQP-TDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeec-CCCceEEecC
Confidence 999999999999999999999999999999999999999999999997 77889999999999999999 6678999999
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002496 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
|++|++||+..++...++..|+..|.+++.+|... .+++++.| .|+-|++..|..+..+.+|...|.+++...|+ +
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~--~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN--LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchh--hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 99999999999999999999999999999999876 56766655 69999999999999999999999999999986 8
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeee---c-----CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 244 IITGSEDGTVRIWHATTYRLENTLN---Y-----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~---~-----~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
+++|+.+|.+.+||.++|-..+... . ....|.+.+|...|..|++|..|.+|.+|.
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 8999999999999998876444331 1 124688999999999999999999999974
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-35 Score=271.93 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=220.8
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC-----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002496 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN-----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
...++++|++.|+.++..+. ...+++++.|..+.+|++. .|..++.+.+|...|..+..+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 44578899999999999987 5678889999999999875 46778999999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC--CCCeeEEEEEeCCCcC
Q 002496 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKP 200 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~ 200 (915)
+++||+.++ +..+.|.+|...|++++|+| ++..+++|+.|.+|++|+..+. +..++..+ ..-|.|++|+|+...+
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999 88899999999999999999 8999999999999999998654 34444333 6789999999998888
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEe
Q 002496 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~ 280 (915)
+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+.++... ..|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-CeEeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998777644 889999999
Q ss_pred cCCCEEEEEecCCeEEEec
Q 002496 281 KSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 281 ~~~~~l~~~~~dg~v~i~~ 299 (915)
|+...|+.+...+ |+||.
T Consensus 243 pnrywL~~at~~s-IkIwd 260 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWD 260 (315)
T ss_pred CCceeEeeccCCc-eEEEe
Confidence 9988888877766 66653
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=278.81 Aligned_cols=287 Identities=19% Similarity=0.271 Sum_probs=253.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
...|..|++.|.+++.+|+.+++++|+.|..-.||++.+|.....+.+|+..|+++.|+.+|.+||+|+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
++.....+...-+.|.-+.|+|.+..|+.|+.||.+.+|.+.++ ...+.+.+|+.++++-.|.| ++..++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 99888888766778999999999999999999999999999987 67788999999999999999 89999999999999
Q ss_pred EEEECCCCCCceEEecC---------------------------------------------------CCCeeEEEEEeC
Q 002496 168 KIWNLGSPDPNFTLDAH---------------------------------------------------QKGVNCVDYFTG 196 (915)
Q Consensus 168 ~v~d~~~~~~~~~~~~~---------------------------------------------------~~~v~~~~~~~~ 196 (915)
++|++.++.+...+... ...+.|+.+.|.
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999988776655310 011112222221
Q ss_pred -CCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEE
Q 002496 197 -GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275 (915)
Q Consensus 197 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 275 (915)
..-++.++|+-||+|.|||+...+..+.+. |...|+.+.|.+ ..+|++++.+|.|+.||.++|++..++.+|...|.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 123467889999999999998766555554 888999999999 68999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEe
Q 002496 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+++++|+.++++++++|++..++
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 99999999999999999998874
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3e-34 Score=262.23 Aligned_cols=268 Identities=19% Similarity=0.394 Sum_probs=239.6
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--eEEEecCCCCEEEE
Q 002496 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l 105 (915)
-+|+++++|.+|++|...+|.+..+++..++.|+.+...|+++.||+++. ..|++||+++++. +.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999999999999999988999999999999999999876 5799999998764 78899999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecC
Q 002496 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAH 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~ 184 (915)
.|..+|+.+++|++||+++|||++.. .+.+.+ .|..+|.++..+| +...|++|..+|.|++||+........+ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999984 555554 4779999999999 8889999999999999999887655544 334
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002496 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
...|.++...|+|. +++.+...|..++|++-++ .++..++.|.+.+....+||++++|+++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 57889999999998 7999999999999998653 356778889999999999999999999999999999999
Q ss_pred CCc-ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 259 TTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 259 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
.+. +....+.+|...+|.++||.||.+|++|+.|+.+++|...
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 888 6777888898999999999999999999999999998533
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=270.06 Aligned_cols=286 Identities=22% Similarity=0.377 Sum_probs=254.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECC-CCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
+...+.+|.+.|..+.|+|+|++||+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345678999999999999999999999999999999943 3455567889999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECC
Q 002496 86 YNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
..+|+.++.++.|.+.+..+.-+.-|. ++.+++.||++++||+++. ...+++. ..-.++++.|.. .+..+.+|+-|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggId 195 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGID 195 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeecccc
Confidence 999999999999999999998666565 4568899999999999976 4455443 345689999997 88899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----CcEEEEecCCcc----CeEEEE
Q 002496 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTH----NVSAVC 236 (915)
Q Consensus 165 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~i~~i~ 236 (915)
+.|++||++.+....++.+|..+|+.+..++.|. ++.+-+.|.++++||++. .+++..+.+|.. .....+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCC--ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999999999999999999999999998 799999999999999975 345777777644 356789
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
|+|++..+.+|+.|..+++||....+.+..+.+|.+.|.++.|+|...+|.+++.|.++++
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999998888899999999999999999999999999999999876
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.5e-33 Score=290.11 Aligned_cols=411 Identities=17% Similarity=0.240 Sum_probs=324.0
Q ss_pred CCCeEEEEEcCCcEEEEECCCCceeEEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002496 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
.|+++++. ..-.|.+||+++|+..+.+.. ...+|+|+.-+|+...||+|..||.|+||+..++....++.+|...|+
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEe-ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 47766663 345799999999966555432 335899999999999999999999999999999988999999999999
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec
Q 002496 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA 183 (915)
Q Consensus 104 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 183 (915)
++.|...|.+|++||.|+.|.+||+-.. .-...+.+|...|+..-|.. +.+.+++.+.|+.|++||+.+..+..+.-.
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E-~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd 189 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGE-EGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHCFETHVD 189 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccc-eeeEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEecccceeeeEEec
Confidence 9999999999999999999999999876 56678899999999999987 789999999999999999999999988889
Q ss_pred CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----------------C--------cEEE----------------
Q 002496 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------------K--------SCVQ---------------- 223 (915)
Q Consensus 184 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~--------~~~~---------------- 223 (915)
|...++.+++.+ + .+++++.|+.+++|++.. | +.+.
T Consensus 190 ~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 190 HRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred ccceEEEEEEec--c--eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecch
Confidence 999999999986 3 689999999999999710 0 0000
Q ss_pred --------------------------------------------------------------------------------
Q 002496 224 -------------------------------------------------------------------------------- 223 (915)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (915)
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNt 345 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNT 345 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCc
Confidence
Q ss_pred ----------------------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002496 224 ----------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 224 ----------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
.+.+|...|.++++|.+...+++|+ ++++++|+..+.+++.++... .+.+..|.|
T Consensus 346 v~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp 422 (888)
T KOG0306|consen 346 VEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVP 422 (888)
T ss_pred eEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecC
Confidence 1124555677777777765555554 557888888888887777654 677777888
Q ss_pred CCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEE
Q 002496 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (915)
Q Consensus 282 ~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 361 (915)
.++++++|+.+|.+.++ ++.+ ... +.....|+..+.+++.
T Consensus 423 gd~~Iv~G~k~Gel~vf---------------------------dlaS---------~~l----~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVF---------------------------DLAS---------ASL----VETIRAHDGAIWSISL 462 (888)
T ss_pred CCceEEEeccCCceEEE---------------------------Eeeh---------hhh----hhhhhccccceeeeee
Confidence 88888888888777763 1111 110 1123467778889999
Q ss_pred CCCCCEEEEEc-CCcEEEEEeecccc-----------------cCccceeEEEEecCCcEEEEec-CCeEEEeccC----
Q 002496 362 NPNGRFVVVCG-DGEYIIYTALAWRN-----------------RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN---- 418 (915)
Q Consensus 362 s~~g~~lav~~-~~~~~i~~~~~~~~-----------------~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~---- 418 (915)
+||++.+++++ |..+.+|+...-.. .....+.++.+||||+|++++- |++|+||-++
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 99999888887 99999997643211 1125679999999999998887 9999998643
Q ss_pred ---cccee--eeecCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE---ccccEEEEcCCCCEEEEEeCCeEEEE
Q 002496 419 ---FQEKR--SVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 419 ---~~~~~--~~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~---~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
.-++. .+....||| +.++++|+.| +|++|-++-|.+-+.+- ..|.+|.|-|...++.++++|+.+..
T Consensus 543 flsLYGHkLPV~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eeeecccccceeEEeccCC----cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEe
Confidence 12222 223377888 9999999999 99999999887665543 58999999999889999999998876
Q ss_pred E
Q 002496 490 K 490 (915)
Q Consensus 490 ~ 490 (915)
|
T Consensus 619 W 619 (888)
T KOG0306|consen 619 W 619 (888)
T ss_pred e
Confidence 6
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-35 Score=310.52 Aligned_cols=242 Identities=23% Similarity=0.481 Sum_probs=229.1
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-------------------------------ceeEEEEecCCCEEEE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------------------------------TMAKSFEVTELPVRSA 63 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~-------------------------------~~~~~~~~~~~~v~~l 63 (915)
...++|..|++|+..||.|..|..|++|.+... ...+++-+|.+||..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 456999999999999999999999999987631 1335577899999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc
Q 002496 64 KFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143 (915)
Q Consensus 64 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 143 (915)
.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+.+.|+|.|-|++++|.|++-++|..... .+.+++.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 78899999999
Q ss_pred cEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE
Q 002496 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
.|.|+.|+| +.+++++||.|.+|++||..+|..++.+.+|.++|.+++|+|.|. +|++|+.||.|.+||+.+++.+.
T Consensus 537 DV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 537 DVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcchh
Confidence 999999999 999999999999999999999999999999999999999999887 99999999999999999999999
Q ss_pred EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 224 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 614 ~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999764
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.5e-33 Score=295.38 Aligned_cols=287 Identities=32% Similarity=0.558 Sum_probs=264.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
.+++.+|.++|.+++|+|++++|++++.+|.|.+|++.+++....+..|..++..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46788999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+++.+..+..|...|.++.|+++++++++++.+|.|.+||+.++ .....+..|...+.++.|+| ++.++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888889999999999999999888888888999999999976 56666778888999999999 68888888889999
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002496 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 168 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 247 (915)
++||+++++....+..+...+.++.|+|++. .+++++.++.|++||+++++.+..+..|...+.+++|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999998888888888888999999999886 68888889999999999999988887888899999999998888888
Q ss_pred EcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+.+|.|++|++.+++....+..+...+.+++|+|+++.+++++.||.+.+|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999999888888888899999999999999999999999987
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=260.61 Aligned_cols=287 Identities=23% Similarity=0.374 Sum_probs=244.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCC-CCeEEEEEcCCcEEEEECCCC---ceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQ---TMAKSF-EVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~-~~~la~~~~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~d 78 (915)
++...+++.+|.++|..++|||- |..||+++.|..|+||+...+ .+...+ .+|+..|++++|+|.|++|++++.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 35667889999999999999998 889999999999999998753 233333 2589999999999999999999999
Q ss_pred CeEEEEECCC--CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEecCC
Q 002496 79 MFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 79 g~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
.++.||.-.. .+++..+.+|...|.|++|+++|.+|++|+.|..|-||.+. ....+...+..|...|..+.|+| .
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-T 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-C
Confidence 9999997654 36788899999999999999999999999999999999988 44567888999999999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC
Q 002496 155 TNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 231 (915)
..+|++++.|.+|++|+-.. -....++.+|...|.+++|.+.|. .|+++++|++++||...+.-. ..|...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~~~~~----~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLYTDLS----GMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeeccCcc----hhcccc
Confidence 89999999999999998762 246788899999999999999987 599999999999999663211 236778
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEeCCCc------cee-eeeecCCccEEEEEEecC-CCEEEEEecCCeEEEec
Q 002496 232 VSAVCFHPELPIIITGSEDGTVRIWHATTY------RLE-NTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 232 i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~-~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~v~i~~ 299 (915)
+..+.|. + ..|++++.|+.|++|.-... +++ ..-..|...|.++.|.|. .++|++|++||.+.+|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999999 4 48999999999999975532 111 233456678999999995 78999999999999984
No 36
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=286.99 Aligned_cols=690 Identities=14% Similarity=0.195 Sum_probs=413.5
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 5 ~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
..+..+|++|.+.|.|++|+.||+.+|+|+.|..|.||+.+-... -.+ .|...|.|+.|+|-...|++++-+ ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 346778999999999999999999999999999999999543322 223 389999999999999999998764 35688
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEEEeecCCccEEEEEEecCC----CCEEE
Q 002496 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKD----TNTFA 159 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~----~~~l~ 159 (915)
+....... .. .....+.+.+|..||++++.|-.+|+|.+-+-..... ....-.+.+.+|.+++|+|.. ...++
T Consensus 120 S~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 76543222 11 2345788999999999999999999999987544311 222334577899999999843 35788
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002496 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
+.....++.+|.+.. +.+-.-....-...|+++.++|. |++.|+.|+.+.+|. +.|-.+-++......|++++..|
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCc--EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 999999999999854 43433333444568999999998 999999999999997 55888888877888999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecC---CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEE
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIW 316 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~ 316 (915)
++++++.|+.||+|..|++............ ....+.+-. +.|.++ ..++|....-...+++. ..++..
T Consensus 274 NsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDViv----QhLi~~---qkvrIkC~DLVkKiaiY-rnrLAV 345 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIV----QHLITE---QKVRIKCKDLVKKIAIY-RNRLAV 345 (1081)
T ss_pred CCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHH----HHHhhc---ceeeeeHHHHHHHHHhh-hhhhee
Confidence 9999999999999999986532211100000 000000000 001110 01111100000000010 112222
Q ss_pred EeeCceEEEEeeecccceeccCCceeee--eeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec-----ccccCc
Q 002496 317 AKHNEIQTVNIKSVGADYEVTDGERLPL--AVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA-----WRNRSF 389 (915)
Q Consensus 317 ~~~~~i~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~-----~~~~~~ 389 (915)
.....+..+.+. +++.-.+ .+++.-......+-+.. .++++++|.+.++..|+... |...++
T Consensus 346 QLpeki~iYel~---------se~~~~mhY~v~ekI~kkf~cSLlVV--c~~HiVlCqekrLqClDF~Gvk~ReW~M~S~ 414 (1081)
T KOG1538|consen 346 QLPEKILIYELY---------SEDLSDMHYRVKEKIIKKFECSLLVV--CANHIVLCQEKRLQCLDFSGVKEREWQMESL 414 (1081)
T ss_pred cccceEEEEecc---------ccccccchhHHHHHHHhhccceEEEE--EcCeEEEEcccceeeecccchhhhhhhHHHH
Confidence 223333333322 2221111 11110001111111222 34678888888888887754 333333
Q ss_pred cceeEEEEecCCc--EEEEecCC-eEEEeccCcc-------ceeeeec-CcccceeecCcEEEEeeCC-eEEEEeccCCc
Q 002496 390 GSALEFVWSSDGE--YAVRESSS-KIKIFSKNFQ-------EKRSVRP-TFSAERIYGGTLLAMCSND-FICFYDWAECR 457 (915)
Q Consensus 390 ~~~~~~~~s~~g~--~l~~~~~~-~i~v~~~~~~-------~~~~~~~-~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~ 457 (915)
.....+.-.|-|+ +++...+| ..+|| ++.. ....++. .++.. .+.||+..++ +..+||+.|++
T Consensus 415 iRYikV~GGP~gREgL~vGlknGqV~kiF-~dN~~PiLl~~~~tAvrClDINA~----R~kLAvVDD~~~c~v~DI~t~e 489 (1081)
T KOG1538|consen 415 IRYIKVIGGPPGREGLLVGLKNGQVLKIF-VDNLFPILLLKQATAVRCLDINAS----RKKLAVVDDNDTCLVYDIDTKE 489 (1081)
T ss_pred HHhhhhhcCCCCcceeEEEecCCcEEEEE-ecCCchhheecccceeEEeeccCC----cceEEEEccCCeEEEEEccCCc
Confidence 3334444445553 34444454 45666 3321 1112222 45554 7789988887 99999999999
Q ss_pred EEEEEEccccEEEEcC-CCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEE
Q 002496 458 LIRRIDVTVKNLYWAD-SGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFI 536 (915)
Q Consensus 458 ~i~~~~~~i~~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i 536 (915)
.+-. +..+.+|.||. ...++++.+..++.+ +.. .|+.-.+ +.. + |+
T Consensus 490 lL~Q-Epg~nSV~wNT~~E~MlcfT~~g~L~V-R~~---------------------~~P~h~q---k~~-G------~V 536 (1081)
T KOG1538|consen 490 LLFQ-EPGANSVAWNTQCEDMLCFTGGGYLNV-RAS---------------------TFPVHRQ---KLQ-G------FV 536 (1081)
T ss_pred eEee-cCCCceEEeeccccceEEEecCCceEE-Eec---------------------cCCcchh---cce-E------EE
Confidence 8765 45789999995 455677766654443 210 1222110 000 0 22
Q ss_pred EEccCCeEEEEECCEEeEEEecccce--EEE-----EEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhh
Q 002496 537 YNNSSWRLNYCVGGEVTTMFHLDRPM--YLL-----GYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE 609 (915)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 609 (915)
.+-..+++ ||.-+.. +..++-|. .+. +.++..-++.|.. +..+ +...+ -+.+++.-+++.|..
T Consensus 537 vG~~gsk~-FCL~~~~--i~~~evp~~~~m~q~Ieag~f~ea~~iaclg-----Vv~~-DW~~L-A~~ALeAL~f~~ARk 606 (1081)
T KOG1538|consen 537 VGYNGSKI-FCLHVFS--ISAVEVPQSAPMYQYIERGLFKEAYQIACLG-----VTDT-DWREL-AMEALEALDFETARK 606 (1081)
T ss_pred EEecCceE-EEEEeee--eecccccccccchhhhhccchhhhhcccccc-----eecc-hHHHH-HHHHHhhhhhHHHHH
Confidence 22221221 2210000 11111100 001 1111111222210 0000 00000 011111222222111
Q ss_pred hcCCC---------------------C-----------cchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHH
Q 002496 610 ILPSI---------------------P-----------KEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEV 657 (915)
Q Consensus 610 ~l~~i---------------------~-----------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~ 657 (915)
.+..+ | .+-+..+++.+.+.|+-.+|+++ +-++.+||.
T Consensus 607 AY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEm----------yTDlRMFD~ 676 (1081)
T KOG1538|consen 607 AYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEM----------YTDLRMFDY 676 (1081)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHH----------HHHHHHHHH
Confidence 11000 1 11124566777777888888754 455666999
Q ss_pred HHHHHHHcCChh---HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHH---------------HHHHHH
Q 002496 658 AQEIATEVQSES---KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGI---------------SKLASL 719 (915)
Q Consensus 658 A~~~a~~~~~~~---~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~---------------~~l~~~ 719 (915)
|.++......++ +-+.-|+.|-...+...|.+++..+|+..+++.+....|..+++ ..++.-
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 999998776544 45677888999999999999999999999988887777766654 344455
Q ss_pred HHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhc
Q 002496 720 AKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (915)
Q Consensus 720 ~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~ 781 (915)
.......-+|..++..+||...-++|.++.++|++|+.+|..+ |+.+..+.-.+.++|...
T Consensus 757 lk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhh
Confidence 5666777899999999999999999999999999999999987 666666655555555533
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=287.52 Aligned_cols=282 Identities=23% Similarity=0.380 Sum_probs=245.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
-..+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|.++|+++.|++++.++++|+.+|.|++|+..-+ .+.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3468999999999999999999999999998665555667799999999999999999999999999999998765 333
Q ss_pred EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.....|...|.+++|+| ....|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++|+.|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEccCCceeEeec
Confidence 34444558999999999 888999999999999999999999999999999999999999876 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC-CCEEEEEecCCe
Q 002496 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGT 294 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~ 294 (915)
.+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.+++.|...++++.|+|- ..++++|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 567788999999
Q ss_pred EEEecCC-CcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-
Q 002496 295 IMVKIGR-EEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG- 372 (915)
Q Consensus 295 v~i~~~~-~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~- 372 (915)
+..|.-. ..|+..+ ...++..|.+++|+|=|.+|+.++
T Consensus 331 vvh~~v~~~~p~~~i----------------------------------------~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEI----------------------------------------PPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred eEEEeccccccccCC----------------------------------------CcccccceeeeeccccceeEeecCC
Confidence 9987422 1111111 134566778899999999999887
Q ss_pred CCcEEEEEe
Q 002496 373 DGEYIIYTA 381 (915)
Q Consensus 373 ~~~~~i~~~ 381 (915)
|..+.+|..
T Consensus 371 d~t~rfw~r 379 (464)
T KOG0284|consen 371 DRTVRFWTR 379 (464)
T ss_pred Ccceeeecc
Confidence 667777743
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=253.59 Aligned_cols=266 Identities=19% Similarity=0.345 Sum_probs=233.6
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~ 86 (915)
+++....+.|..+.+.|+++.||+++ .-.|++||++++. ++.++.+|...|+++.|..+|+++++|++||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 44444556799999999999999998 4579999999875 57889999999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+.....+.++ |..+|+++..+|+...|++|..+|.|++||+....-..........+|.++...| ++..++.+...|+
T Consensus 113 R~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 113 RSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGN 190 (311)
T ss_pred cCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCcc
Confidence 9866666665 6799999999999999999999999999999987222333344557799999999 9999999999999
Q ss_pred EEEEECCCC------CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC
Q 002496 167 IKIWNLGSP------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 167 i~v~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~ 239 (915)
.++|++-+. .++.+++.|.+.+..+.++|+++ +|++++.|.+++||+..+. +....+.+|...++..+||.
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~ 268 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA 268 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCc--EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence 999998654 35567788999999999999998 8999999999999999887 66677889999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
||.+|++|+.|+.+++|++..++.+....+|.....+++.
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999999999999999999998777666654
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=306.46 Aligned_cols=288 Identities=26% Similarity=0.464 Sum_probs=261.7
Q ss_pred hhhcccC-CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 8 KRKLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 8 ~~~l~~h-~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
...+.+| ...|+++.|+|+|.++++++.++.+++|+..+.+ ....+.+|...|++++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3344444 7889999999999999999999999999998777 777788899999999999999999999999999999
Q ss_pred EC-CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 85 NY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 85 d~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
|+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||++++ .+...+.+|...|.+++|++ +++.|++++.
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~ 308 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASY 308 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCC
Confidence 99 556889999999999999999999999999999999999999997 88999999999999999999 9999999999
Q ss_pred CCcEEEEECCCCC--CceEEecCCCC--eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC---eEEEE
Q 002496 164 DRTIKIWNLGSPD--PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN---VSAVC 236 (915)
Q Consensus 164 dg~i~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~i~ 236 (915)
|+.|++||+.++. +...+..+... +++++|+|++. ++++++.|+.+++||++.+.++..+.+|... +.+..
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 9999999999988 45666655554 99999999998 8999999999999999999999999888774 44555
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-CccEEEEEEecCCCEEEEEe--cCCeEEEec
Q 002496 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGY--DEGTIMVKI 299 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~--~dg~v~i~~ 299 (915)
.++.+.++++|+.|+.|++||..++..+..+..| ...+..+.++|..+++++++ .|+.+.+|.
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999999999999999 88999999999999999988 788888874
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-33 Score=299.55 Aligned_cols=244 Identities=25% Similarity=0.486 Sum_probs=228.8
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeEEEecCCC
Q 002496 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-------------------------------DKVKVFEAHTD 100 (915)
Q Consensus 52 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~-------------------------------~~~~~~~~~~~ 100 (915)
++......++|..|+++++.||.|..|..|++|.+... ....++-+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34445667999999999999999999999999988631 12345668999
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002496 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 180 (915)
+|....|+|+.++|++||.|+++++|.+.+. .+...+.+|..+|+.+.|+| .|-+|++++.|++-++|......+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999997 77888889999999999999 899999999999999999999999999
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+.+|...|.|+.|+|+.. |+++|+.|.+|++||..+|..++.|.+|.++|++++|||+|++|++|+.||.|++||+.+
T Consensus 531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 261 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
++++..+..|.+.|.++.|+.+|..||+|+.|.+|++|.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999999984
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=249.86 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=253.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
.+.+..|.++|.++.|+-||+|.++++.|.+|++||...|.+++++.+|...|..++.+.|+..+++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
||+..+.+.+|.+.|..+.|+.+...+++|+.|.++++||.++. ..+.+++......|+++..+ +..++.|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999864 35677787778889999985 578999999999
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEE--EEEeCCCCEE
Q 002496 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA--VCFHPELPII 244 (915)
Q Consensus 167 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~--i~~~~~~~~l 244 (915)
++.||++.++...- ....+|+|++|+++++ ..++++-|+++++.|-.+|+.+...++|...-.. .+++.....+
T Consensus 167 vRtydiR~G~l~sD--y~g~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD--YFGHPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehh--hcCCcceeEEecCCCC--EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 99999998865433 3467899999999998 7999999999999999999999999999876443 4556666799
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002496 245 ITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
++|++||.|.+||+.....+..+..+... +.+++++|.-..+.+++..+.+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99999999999999999999988888776 899999999888888776655443
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=273.57 Aligned_cols=292 Identities=17% Similarity=0.248 Sum_probs=249.7
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~ 80 (915)
..+-.+.+..|++.|.-+.||++|++||+++.|.+..||.+... ++.+++.+|..+|..+.||||.++|++++.+..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 34556788999999999999999999999999999999987554 457888899999999999999999999999999
Q ss_pred EEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 81 IRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+.+||..+|.....+. +|...+.+.+|.|||..+++|+.|++|..||++.+ ....--......|.+++.++ |+..++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC-CCcEEE
Confidence 9999999999988875 34678999999999999999999999999999875 22222222336699999999 899999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC--eEEEEE
Q 002496 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVCF 237 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~i~~ 237 (915)
+.+.|..|++++..+...... -....+|++++++.+++ ++++.-.+..+.+||+.....++.+.+|... +-.-||
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k--~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGK--LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCc--EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 999999999999876544433 33567899999998887 8899999999999999988888888888765 334455
Q ss_pred eC-CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC-CEEEEEecCCeEEEecC
Q 002496 238 HP-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 238 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~i~~~ 300 (915)
-. +..++++||+|+.|+||+..+|+++.++.+|...|.+++|+|.. ..+|++++||+|+||-.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 54 34799999999999999999999999999999999999999975 57889999999999843
No 43
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.2e-30 Score=261.45 Aligned_cols=434 Identities=19% Similarity=0.316 Sum_probs=316.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCC--------cEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSG--------TVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAG 75 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~ 75 (915)
..++.+.+|+..|.||+.||+.-.+++|...| .|+|||..+-..+..+...+..|.|++|++ .|.+++.-
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 35678889999999999999998899876655 499999888888888887888999999998 35556555
Q ss_pred e--CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE--EEeecC-CccEEEEEE
Q 002496 76 A--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGH-SHYVMQVTF 150 (915)
Q Consensus 76 ~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~i~~~~~ 150 (915)
. .+..+.|||...+......+..+..+....|+|.++.+++....|.+.+|+++++.... -+++++ ...|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3 35689999999888887787778889999999998888877888999999999873222 233333 367999999
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE-------
Q 002496 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ------- 223 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------- 223 (915)
.+ + .-+++|..+|.|.||+..+.+..+....|.++|.+++...+|. |++|+.|+.|..||-. -+.++
T Consensus 255 ~e-n-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~-y~k~r~~elPe~ 328 (626)
T KOG2106|consen 255 LE-N-GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDN-YRKLRETELPEQ 328 (626)
T ss_pred cC-C-CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc---EeecCccceEEecccc-ccccccccCchh
Confidence 98 4 4588999999999999988777777779999999999998886 8889999999999832 11111
Q ss_pred ----------------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec
Q 002496 224 ----------------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 224 ----------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
...+|....+.++.+|+...+++++.|+.+++|+ ..+++.+...
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 1235666777888888888888888888888888 4455555443
Q ss_pred CCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeec
Q 002496 270 GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (915)
Q Consensus 270 ~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (915)
. .++.++.|+|.| .+|+|+..|...+- +.....+ +.+
T Consensus 407 ~-d~~~~~~fhpsg-~va~Gt~~G~w~V~----------d~e~~~l--------------------------v~~----- 443 (626)
T KOG2106|consen 407 E-DPAECADFHPSG-VVAVGTATGRWFVL----------DTETQDL--------------------------VTI----- 443 (626)
T ss_pred c-CceeEeeccCcc-eEEEeeccceEEEE----------eccccee--------------------------EEE-----
Confidence 3 567788888888 88888888877662 1111111 000
Q ss_pred CCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-------CccceeEEEEecCCcEEEEec-CCeEEEeccCc-
Q 002496 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF- 419 (915)
Q Consensus 350 ~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-------~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~- 419 (915)
..+..+++.++++|+|.+||+++ |+.+.+|.......+ ....++.+.||+|++|+.+.+ |-.|-.|....
T Consensus 444 ~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 444 HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC 523 (626)
T ss_pred EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC
Confidence 11133567999999999999999 899999987654322 126789999999999999998 67788885221
Q ss_pred ---cceeeeec-------Cccc----ce--ee------cCcEEEEeeCC-eEEEEeccCCcEEEE------EEccccEEE
Q 002496 420 ---QEKRSVRP-------TFSA----ER--IY------GGTLLAMCSND-FICFYDWAECRLIRR------IDVTVKNLY 470 (915)
Q Consensus 420 ---~~~~~~~~-------~~s~----~~--i~------~g~~La~~~~~-~v~~~d~~~~~~i~~------~~~~i~~v~ 470 (915)
...+.+++ .|.. ++ +. ..++||++++. +|++|...-.+.... +...|++|+
T Consensus 524 ~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~ 603 (626)
T KOG2106|consen 524 KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVA 603 (626)
T ss_pred cccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEE
Confidence 11111222 1111 10 00 36688888888 999998764443222 224799999
Q ss_pred EcCCCCEEEEEeCCeEE-EEE
Q 002496 471 WADSGDLVAIASDTSFY-ILK 490 (915)
Q Consensus 471 ~s~dg~~la~~~~~~~~-~~~ 490 (915)
|..+...+.+.+.|..+ .|.
T Consensus 604 Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 604 FLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred EeeCCceEEecCCCceEEEEE
Confidence 99766666665555544 443
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=262.13 Aligned_cols=247 Identities=24% Similarity=0.408 Sum_probs=230.8
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+.+.+.+|.+.|+|+++.|-+.+|++|+.|++|.|||+.+|+...++.+|...++.+++|+-.+|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002496 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
+.+ +.++.+.+|-+.|.|++.+| .-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|... .+++|+.|
T Consensus 223 e~n-kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--qvit~S~D 298 (460)
T KOG0285|consen 223 EYN-KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--QVITGSHD 298 (460)
T ss_pred hhh-hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--ceEEecCC
Confidence 988 77788889999999999999 888999999999999999999999999999999999999987665 59999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEE
Q 002496 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
++|++||++.|+...++..|...+.+++.+|....+++++.| .|+.|++..|..+..+..+..-+.+++...|+ .+++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 999999999999999999999999999999999999999887 69999999999999999999999999998875 7889
Q ss_pred EecCCeEEEecCC
Q 002496 289 GYDEGTIMVKIGR 301 (915)
Q Consensus 289 ~~~dg~v~i~~~~ 301 (915)
|+++|.+.+|.-+
T Consensus 377 G~dng~~~fwdwk 389 (460)
T KOG0285|consen 377 GGDNGSIMFWDWK 389 (460)
T ss_pred cCCceEEEEEecC
Confidence 9999999997543
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=282.43 Aligned_cols=288 Identities=21% Similarity=0.387 Sum_probs=255.4
Q ss_pred hhhhhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
.+.+.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677899999999999999 889999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||++||+++..+.. ...+.|+.|+|++ +.+++|+.|+.|+.||++++ .+.+.+..|-+.|..+.|-+ ++..|++++
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999999874 5578999999998 78899999999999999999 67788888999999999999 999999999
Q ss_pred CCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc---EEEEecCCcc--CeEEEE
Q 002496 163 LDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVC 236 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~i~~i~ 236 (915)
.|++++||+.+.+-++... ........|+..+|++. ++++-+.|+.|.++.+...- ....+.+|.. .-..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887766543 33445667888899887 89999999999999865422 2344566643 356789
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC-CCEEEEEecCCeEEEe
Q 002496 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVK 298 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~v~i~ 298 (915)
|||||.+|++|+.||.+.+||.++-+++..++.|.+.+..+.|+|. ...+|+++.+|.|.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999999999999999999999999999999999999997 4678899999999997
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=244.96 Aligned_cols=291 Identities=24% Similarity=0.356 Sum_probs=236.9
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC---ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002496 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTM---DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vwd~~~~---~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
.++.+++|.+++..++|+|- |..|++|+.|+.|++|+...+ .+...+ .+|+..|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678889999999999998 889999999999999998853 233333 3799999999999999999999999999
Q ss_pred EEEECCC-CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCc
Q 002496 124 KLWDWEK-GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 124 ~iwd~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
.||.-.. ...+...+++|...|.|++|++ ++++||+++.|+.|-||.+..+. ....++.|...|..+.|+|..+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED- 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-
Confidence 9997653 3578889999999999999999 99999999999999999987543 4567789999999999999877
Q ss_pred CEEEEEeCCCeEEEEECC---CCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEE
Q 002496 200 PYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|++++.|.+|++|+-. ...+++++.+|...|.+++|+|.|..|++++.|++|+||...+.- -..+...++.
T Consensus 164 -lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 -LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred -eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 89999999999999866 346899999999999999999999999999999999999855211 1234577889
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002496 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
+.|. ...|++++.|+.++++.... .+++....+..+.-..|+..+
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~---------------------------------~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD---------------------------------SPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC---------------------------------CCCCchHHHHHhhhccccccc
Confidence 9998 45799999999998852221 112222222222335667788
Q ss_pred ceEEECCC-CCEEEEEc-CCcEEEEEe
Q 002496 357 QSLKHNPN-GRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 357 ~~l~~s~~-g~~lav~~-~~~~~i~~~ 381 (915)
.+++|+|. ..+|+.++ ||.+.+|..
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99999994 45666666 788888864
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-33 Score=255.47 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=265.8
Q ss_pred hhhhcccCCCCEEEEEEcC---CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 7 IKRKLAQRSERVKSVDLHP---SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp---~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
+..+..||+.+|..++||| +|-+|++++.||.-.+-+-++|..+-+|.+|.+.|.+...+.+...-++++.|-+-+|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3445679999999999997 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
||.-+|..+..|. |..-|..++|+.|.++|++|+.+..++++|++........+.+|.+.|..+.|.. ..+.|++++.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc
Confidence 9999999999886 7888999999999999999999999999999988777888899999999999998 7788888899
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002496 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
|++|++||.++++.+.++. .+.+|+++.++++|+ +++....+.|.+||..+...++.++ ....|.+.+++|+..+
T Consensus 164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeecc-CccccccccccCCCce
Confidence 9999999999999998887 578899999999997 7777778899999999988888877 4567999999999999
Q ss_pred EEEEEcCCcEEEEeCCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCc
Q 002496 244 IITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~ 303 (915)
+++|++|+.++.||..++..+..+ ++|.++|.|+.|+|+|...++|+.||+|++|.....
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999999988886 788999999999999999999999999999965443
No 48
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-29 Score=257.86 Aligned_cols=470 Identities=15% Similarity=0.213 Sum_probs=337.8
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee-EEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~-~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
-....|++|||+.+.+.||++-.+|.|.||++..+-.. ..+.++ +..|.+++|+ ++..|++.+-+|.|.-||+.+++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 34678999999999999999999999999999887543 445554 5689999999 55568888899999999999999
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE-EEeecCCccEEEEEEecCCCCEEEEEECCCcEEE
Q 002496 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (915)
+...+....+.|++++.+|.+..+++|++||.+..++...+.... ..+....++|.++.|+| ++..++.|+.||.|++
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRI 180 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEE
Confidence 999999999999999999999999999999988888887763332 34455678999999999 8888999999999999
Q ss_pred EECCCCCCceEEe--------cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002496 170 WNLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 170 ~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
||..++....... ....-|+++.+..++ .|++|.+-|+|.+||...+..++.+..|...|.+++..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 9999887665221 122346777777666 59999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcce----eeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcc-------------
Q 002496 242 PIIITGSEDGTVRIWHATTYRL----ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP------------- 304 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~------------- 304 (915)
.+++++|.|+.|..|...+... ......|...+.+++..++ .+++|+.|+.+.+-..++.+
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhcccccccc
Confidence 9999999999999998776543 2233456678999999887 89999999999985433311
Q ss_pred -eeEecCCCcEEEE-eeCceEEEEeeecccceeccCCceeeeee-eecCCcccCCceEEECCCCCEEEEEcCCcEEEEEe
Q 002496 305 -VASMDNSGKIIWA-KHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTA 381 (915)
Q Consensus 305 -~~~~~~~g~~~~~-~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~ 381 (915)
.+.+.+..+++.. ....+....+.+. ...|+.-...+ +-.-.....+++-+.||+|+++++++-.++.+|.+
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~-----~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L 410 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSV-----ILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRL 410 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCc-----ccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEe
Confidence 1111111111111 1111111111111 11111111000 00112233567889999999999999999999977
Q ss_pred ecccc----------cCccceeEEEEecCCcEEEEec--CCeEEEeccC---ccceeeeec----------Ccccceeec
Q 002496 382 LAWRN----------RSFGSALEFVWSSDGEYAVRES--SSKIKIFSKN---FQEKRSVRP----------TFSAERIYG 436 (915)
Q Consensus 382 ~~~~~----------~~~~~~~~~~~s~~g~~l~~~~--~~~i~v~~~~---~~~~~~~~~----------~~s~~~i~~ 436 (915)
....+ .....+..+.|+-|+..++..+ ...+.+++.+ +++...+.. ..+++
T Consensus 411 ~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd---- 486 (691)
T KOG2048|consen 411 QPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD---- 486 (691)
T ss_pred ccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----
Confidence 65321 1223567788888876555554 4666666543 222222211 34566
Q ss_pred CcEEEEeeCC-eEEEEeccCCcEE---EEEEccccEEEEcC-CCCEE-EEEeCCeEEEEEecHHHHHH
Q 002496 437 GTLLAMCSND-FICFYDWAECRLI---RRIDVTVKNLYWAD-SGDLV-AIASDTSFYILKYNRDVVSA 498 (915)
Q Consensus 437 g~~La~~~~~-~v~~~d~~~~~~i---~~~~~~i~~v~~s~-dg~~l-a~~~~~~~~~~~~~~~~~~~ 498 (915)
|+++|+.+.. .|.+|++++++.- .++...++.+.++| +...| +..++..++-++.+..++.+
T Consensus 487 G~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 487 GNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred CCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 9999988877 9999999988642 24456899999994 44444 44556667777765444443
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=264.18 Aligned_cols=283 Identities=21% Similarity=0.336 Sum_probs=257.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEE--------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF--------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
+..+-+-|..|||||++|++|+.||-|.+||+.+|+..+.+ --++.+|.|+.||.|...+++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34556889999999999999999999999999999776544 3478899999999999999999999999999
Q ss_pred ECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 85 d~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.+.+|.+++.|. +|+..|+|+.||.|+..+++++.|.++++--+.++ ++.+.+.+|.+.|....|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999997 89999999999999999999999999999999999 88889999999999999999 9999999999
Q ss_pred CCcEEEEECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC---CccCeEEEEEe
Q 002496 164 DRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVSAVCFH 238 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~i~~~ 238 (915)
||+|++|+..+.++..+++. ...+|+++...|.+.. .++++...++|+|.+++ |+.++++.. ..+...+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99999999999988877753 4567888888887754 78888899999999987 888888864 23457778899
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
|.|.++.+.++|+.++.|.+.+|++..++..|...+..++-+|..+.+|+-+.||.+.+|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999883
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=250.91 Aligned_cols=286 Identities=19% Similarity=0.323 Sum_probs=243.3
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++..+.+|++.|..+.|+|+|.+|++|+.|..|.+|+. ...+....+++|++.|..+.|.++++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34456789999999999999999999999999999995 44455677889999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
.+++ +....+.+|...|.++.-+..+..++.+++.||++++||+++...++++. .+.+++++.|...++ -+.+|+-
T Consensus 119 ~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~--qv~sggI 194 (338)
T KOG0265|consen 119 AETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD--QVISGGI 194 (338)
T ss_pred cccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc--ceeeccc
Confidence 9999 77888899999999988555566788899999999999999888877765 467889999998888 4999999
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCC----ccEEEEEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL----ERVWAIGY 279 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~----~~v~~i~~ 279 (915)
|+.|++||++.+.....+.+|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.++. .....++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999999999999999999999999999999999998754 3466665553 34567899
Q ss_pred ecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceE
Q 002496 280 MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL 359 (915)
Q Consensus 280 ~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 359 (915)
+|+++.+.+|+.|..+++|..... .++ ..++.+...+..+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r---------~~l-------------------------------yklpGh~gsvn~~ 314 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSR---------RIL-------------------------------YKLPGHYGSVNEV 314 (338)
T ss_pred cCCCCccccccccceEEEeecccc---------cEE-------------------------------EEcCCcceeEEEe
Confidence 999999999999999999743221 111 1146677778899
Q ss_pred EECCCCCEEEEEc-CCcEEE
Q 002496 360 KHNPNGRFVVVCG-DGEYII 378 (915)
Q Consensus 360 ~~s~~g~~lav~~-~~~~~i 378 (915)
.|+|...++..|+ |.++.+
T Consensus 315 ~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eecCCCcEEEEeccCceeEe
Confidence 9999999998887 666554
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=311.10 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=240.7
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC----c----eeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 002496 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----T----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFI 81 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i 81 (915)
+..|.+.|.+++|+|+|++||+|+.||.|+||+..+. . ....+. +...|.+++|+| ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 122233 356799999987 47899999999999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++ .....+..+ ..+.++.|++.++..|++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999999999999999999999997 7889999999999999999987 455555544 578999997658999999
Q ss_pred EECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCeE
Q 002496 161 ASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVS 233 (915)
Q Consensus 161 ~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~ 233 (915)
|+.||.|++||+++.+ +...+.+|...|.++.|. ++. ++++++.|++|++||++. ..++..+.+|...+.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 566778899999999997 444 799999999999999974 357888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeee-------------ecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-------------NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+++|+|++++|++|+.||.|++|+......+..+ ..+...|.+++|+|++..|++|+.+|.|.+|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 9999999999999999999999997765433222 1233569999999999999999999999997
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-32 Score=262.08 Aligned_cols=289 Identities=25% Similarity=0.376 Sum_probs=256.0
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+...+.+|..+|+.+.|+|+-..+++++.|++|++||+.+++....+++|.+.+..+.|+..|+++++++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
..+...+.+.+.+|...|.+++|-| .++++++++.|.+|+.|++.++-++.++.+|..-|..++.+.+|. ++++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~As~s~ 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIASCSN 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEEecCC
Confidence 9986677888889999999999999 789999999999999999999999999999999999998877776 8999999
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCC---------------CCEEEEEEcCCcEEEEeCCCcceeeeeecCCc
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE---------------LPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~---------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 272 (915)
|.+|++|-+.++++...++.|..+|-+++|-|. ++++.+++.|++|++||+.++.++.++.+|..
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 999999999999999999999999999999773 25899999999999999999999999999999
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCc
Q 002496 273 RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC 352 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (915)
.|..++|+|.|++|+++.+|+++++|. +.+++.. +.+..+
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwd------------------------------------l~~~~cm----k~~~ah 375 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWD------------------------------------LKNLQCM----KTLEAH 375 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEE------------------------------------eccceee----eccCCC
Confidence 999999999999999999999999973 2222221 123455
Q ss_pred ccCCceEEECCCCCEEEEEc-CCcEEEE
Q 002496 353 DLYPQSLKHNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 353 ~~~~~~l~~s~~g~~lav~~-~~~~~i~ 379 (915)
+..++++.|..+..++++|+ +..+.+|
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeee
Confidence 66777788877777777766 5555555
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-33 Score=268.19 Aligned_cols=272 Identities=25% Similarity=0.442 Sum_probs=240.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
.+..|.|+.+. ...+++|..|++|+|||..+..+.+.+.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45678898886 4568999999999999999999999999999999999985 4589999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEE
Q 002496 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d 171 (915)
++-.|...|..+.|+. .++++++.|.+|.+||+.+.. .+...+.+|...|..+.|+ ..++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 9999999999999984 589999999999999998652 3345678999999999995 56999999999999999
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002496 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
+.+.+.+.++.+|..+|.|+.+. +. ++++|++|.+|++||+..|.+++.+++|..-|.++.|.. +.+++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~r--lvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--DR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhcc--Ce--EEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 99999999999999999999983 33 899999999999999999999999999999999999965 6799999999
Q ss_pred cEEEEeCCCcc---------eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCC
Q 002496 252 TVRIWHATTYR---------LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 252 ~v~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~ 302 (915)
+|++||+.++. ++.++..|.++|..+.|. ...+++++.|.+|.+|....
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCC
Confidence 99999988754 344556677899999994 56788899999999985433
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.3e-31 Score=253.89 Aligned_cols=277 Identities=27% Similarity=0.440 Sum_probs=241.8
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCC
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~dg~i~vwd~~~~ 89 (915)
.|.+-|.++... ++++++|++||.++||| ..|+.++.+.+|.++|.+++|..... .|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477788888777 78999999999999999 68889999999999999999865443 5999999999999998876
Q ss_pred cee----EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC------------------------eeEEEEeecC
Q 002496 90 DKV----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------WMCTQIFEGH 141 (915)
Q Consensus 90 ~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------------------------~~~~~~~~~~ 141 (915)
... +.-.+|...|.++...++|.++++|+.|.+|.+|+..+. +.+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 542 333489999999999999999999999999999993221 2445567899
Q ss_pred CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-
Q 002496 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 220 (915)
..+|.++.|++ ...+++++.|.+|+.||+.++.....+. ....++|+.++|..+ +|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc--eeeecCCCCceeecCCCCCCC
Confidence 99999999995 7899999999999999999998887776 467889999999776 89999999999999999754
Q ss_pred --EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002496 221 --CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 221 --~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
..+++.+|.+.|.++.|+|... .|++|+.|+++++||+++.+ ++..+..|...|.++.|.. +..|++|+.|.+++
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 5678899999999999999765 67899999999999999887 8999999999999999975 56899999999999
Q ss_pred Ee
Q 002496 297 VK 298 (915)
Q Consensus 297 i~ 298 (915)
+.
T Consensus 414 i~ 415 (423)
T KOG0313|consen 414 IF 415 (423)
T ss_pred Ee
Confidence 85
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.6e-30 Score=246.92 Aligned_cols=325 Identities=15% Similarity=0.202 Sum_probs=273.4
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
..+.+|..|..+|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|.+.|+++.||.+|.+|++|+-+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
..++.. ...+...-..|.-+.|+| ....|+.|+.||.+.+|.+.++...+.+.+|..++++=.|.|+|+ .++++..
T Consensus 135 ~stg~~-~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--r~~tgy~ 210 (399)
T KOG0296|consen 135 VSTGGE-QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--RILTGYD 210 (399)
T ss_pred cccCce-EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--eEEEEec
Confidence 999844 444434556788999999 899999999999999999999888889999999999999999988 6999999
Q ss_pred CCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec--------C---CccEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY--------G---LERVW 275 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~---~~~v~ 275 (915)
||+|++|+..+++++..+... ....+++.++..+..++.|+.++.+++-+..+|+.+...+. + ...|-
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999999999998888643 33567889999999999999999999999999988776663 1 23455
Q ss_pred EEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccC
Q 002496 276 AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (915)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 355 (915)
++.|+..-.+.|+|+-||+|.||...... .+..-.++..
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----------------------------------------~R~~c~he~~ 329 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAST-----------------------------------------LRHICEHEDG 329 (399)
T ss_pred hcccccccchhhcccccceEEEEecccch-----------------------------------------hheeccCCCc
Confidence 66777778889999999999997322111 1111234445
Q ss_pred CceEEECCCCCEEEEEcCCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec-CCeEEEecc
Q 002496 356 PQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSKIKIFSK 417 (915)
Q Consensus 356 ~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~ 417 (915)
+..+.|-++..+++.|.+|.+..|+.+.++.+ +...|.+++.+|+++++++.+ +++.+||..
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 77888988555666667999999999988644 456789999999999999998 688888853
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=261.19 Aligned_cols=276 Identities=21% Similarity=0.409 Sum_probs=243.0
Q ss_pred CCCEEEEEEcCCCCe-EEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 15 SERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
.+.|.+++|||..++ +|+++ .-.|.||+..+....+.+.-....|.++.|-.||+++++|+..|.|+|||+++...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 467999999998775 55544 5679999999888888888888999999999999999999999999999988877788
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
.+.+|..++..+.|+|+++ .+++|++|+.+++||+.+.. ....+.+|..+|.|.+|+|..+..+++|+.||+|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8999999999999999654 56788899999999999984 466788999999999999977889999999999999999
Q ss_pred CCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002496 173 GSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
++.. .+..+ .|..+|..+.+-|+|. .+++++ ...|++||+.+|.. +..+..|...|+|+++..++..|++|+-|
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs--~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS--LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC--EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 9874 44444 5899999999999987 566655 56899999986554 44555599999999999999999999999
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+.|++||+.+++.+..+..+ ++|.+++.+|+++.+++|..+|.+.+
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeee
Confidence 99999999999999999887 89999999999999999999999987
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8.5e-28 Score=255.62 Aligned_cols=464 Identities=15% Similarity=0.246 Sum_probs=343.0
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Q 002496 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-D 90 (915)
Q Consensus 12 ~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~-~ 90 (915)
..+.+.|+|++-+.+ ++.+|. ...|.+|- +.......+..|...|.-+. +=|.+++++..++.+.||+..++ .
T Consensus 73 ~~lp~~I~alas~~~--~vy~A~-g~~i~~~~-rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 73 KPLPDKITALASDKD--YVYVAS-GNKIYAYA-RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCCceEEEEecCc--eEEEec-CcEEEEEE-ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 457788999887654 455544 45688886 33355566777877776554 56889999999999999998874 1
Q ss_pred ----eeEEEecCCCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECC
Q 002496 91 ----KVKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 91 ----~~~~~~~~~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
.+..++...+.|+++ ++|.. +.++.|+..|.+.+|+++++ +....+.++...|+++.-+| -=..++.|..+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCC-cceEEEEeccC
Confidence 112233333347766 45543 46899999999999999999 77888899999999999999 78899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCE
Q 002496 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPI 243 (915)
Q Consensus 165 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~ 243 (915)
|+|.+++++.++.+.+++...+.|+.++|..+|.. ++++|+..|.+.+||+...+.+..+. .|.+.|....|.|..+.
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 99999999999999999866799999999998874 88999999999999999887776665 68899999999999999
Q ss_pred EEEEEcCCcEEEEeCCC--c--ceeeeeecCCccEEEEEEe-cCCCEEEEEecCCeEEEec----------CC-------
Q 002496 244 IITGSEDGTVRIWHATT--Y--RLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI----------GR------- 301 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~--~--~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~v~i~~----------~~------- 301 (915)
+++.+.|+.+++|=..+ | +.++.-.+|..+..++.|. .+|..+..++.|++++.+. ++
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999998885443 3 4677778899999999998 6788999999999776631 11
Q ss_pred ------------CcceeEecCCC--c-----EEEEeeCceEEEEeeecccceeccCCce--eeeeeeecCCcccCCceEE
Q 002496 302 ------------EEPVASMDNSG--K-----IIWAKHNEIQTVNIKSVGADYEVTDGER--LPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 302 ------------~~~~~~~~~~g--~-----~~~~~~~~i~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~l~ 360 (915)
.+++..+...+ . ++....++... ..|+..+... -.+..+.+......+++++
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~-------~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA-------YTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE-------EEEeccCcccccEEecCccccccCcceEEEE
Confidence 12233332211 1 11111111111 1122222111 1122233344566788999
Q ss_pred ECCCCCEEEEEc-CCcEEEEEeecccc--------cCccceeEEEEecCCcEEEEec-CCeEEEeccC------------
Q 002496 361 HNPNGRFVVVCG-DGEYIIYTALAWRN--------RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN------------ 418 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~~~~~--------~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~------------ 418 (915)
.++.|+|..+|. .|.+-+|+++++.. .+.+.++.++...-++.+++++ +|.+++||..
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 999999999987 89999999987632 2346788888777777777776 8999999832
Q ss_pred ------------------------------------ccceee--eecCcccceeecCcEEEEeeCC-eEEEEeccCCcEE
Q 002496 419 ------------------------------------FQEKRS--VRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (915)
Q Consensus 419 ------------------------------------~~~~~~--~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i 459 (915)
|.++.. ....|||| |++|++++.| +|++||+.++.++
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D----grWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD----GRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC----CcEEEEeecCCcEEEEeccCccee
Confidence 111111 11278888 9999999998 9999999999999
Q ss_pred EEEE--ccccEEEEcCCCCEEEEEeCC-eEEEEEecHHHH
Q 002496 460 RRID--VTVKNLYWADSGDLVAIASDT-SFYILKYNRDVV 496 (915)
Q Consensus 460 ~~~~--~~i~~v~~s~dg~~la~~~~~-~~~~~~~~~~~~ 496 (915)
-.+. .++.++.|||+|.+||++..+ .-+++|.|+..+
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence 8776 589999999999999999766 444556665443
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.6e-29 Score=265.68 Aligned_cols=285 Identities=31% Similarity=0.515 Sum_probs=243.8
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002496 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+.+|..+|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
+ .....+..|...+.++.|+| ++.++++++.+|.|.+||+.+++....+..|...+.++.|+|++. ++++++.++.
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~ 158 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGT 158 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCc
Confidence 6 45666778888999999999 677888888899999999998888888888889999999999855 6777777999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
|++||+++++.+..+..|...+.++.|+|+++.+++++.+|.|++||+.+++....+..+...+.++.|+|++.++++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999999998888888888999999999999999999999999999999998888877878999999999988888888
Q ss_pred cCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002496 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
.+|.+.+|.... ++.+ ..+..+...+..+.|+|++++|++
T Consensus 239 ~~~~i~i~~~~~------------------------------------~~~~----~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 239 EDGTIRVWDLRT------------------------------------GECV----QTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCCcEEEEEcCC------------------------------------ceeE----EEccccCCcEEEEEECCCCCEEEE
Confidence 899999863221 0000 001123335677888888887777
Q ss_pred Ec-CCcEEEE
Q 002496 371 CG-DGEYIIY 379 (915)
Q Consensus 371 ~~-~~~~~i~ 379 (915)
++ ++.+.+|
T Consensus 279 ~~~d~~i~iw 288 (289)
T cd00200 279 GSADGTIRIW 288 (289)
T ss_pred ecCCCeEEec
Confidence 76 6677776
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-30 Score=231.59 Aligned_cols=244 Identities=20% Similarity=0.318 Sum_probs=219.7
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
..+.+..+.++|+.+.|+-+|++.++++.|.+|++||...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC--CCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.++ +..+.+.+|.+.|..+.|+. +...+++|+.|.++++||.++ .+|++.+......|.++.... . .|++|+
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--h--eIvaGS 162 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--H--EIVAGS 162 (307)
T ss_pred ccC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--c--EEEeec
Confidence 999 78889999999999999998 889999999999999999876 567888888888999998853 3 599999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccE--EEEEEecCCC
Q 002496 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSR 284 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~ 284 (915)
-||+++.||++.|+..... ...+|++++|+++++..++++.|+++++.|-.+|+++..+.+|...- ...+++....
T Consensus 163 ~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 9999999999998876544 35689999999999999999999999999999999999999886543 3456667778
Q ss_pred EEEEEecCCeEEEecC
Q 002496 285 RIVIGYDEGTIMVKIG 300 (915)
Q Consensus 285 ~l~~~~~dg~v~i~~~ 300 (915)
.++.|++||.+.+|..
T Consensus 241 hV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDL 256 (307)
T ss_pred eEEeccCCceEEEEEe
Confidence 9999999999999843
No 60
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=259.79 Aligned_cols=439 Identities=15% Similarity=0.241 Sum_probs=306.1
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEEEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRVY 84 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--dg~i~vw 84 (915)
+.+..|..+++|++|||+|+++|+|- ....++||++.....+..|..|+-.|+|++|+|.++++++.+. |..|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 33456677999999999999999985 4567999999999899999999999999999999999997665 7788899
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--------------------------------
Q 002496 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-------------------------------- 132 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------------------- 132 (915)
|++..-.... ..-...|..++|+.+|.|+++.+. ..|++|.++.+.
T Consensus 152 dWr~N~~~as-nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 152 DWRVNSSGAS-NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred hhhhcccccc-cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence 8753221111 112345566666666666655543 356666543220
Q ss_pred -------------------------------------------------------------eEEEEe-ecC---------
Q 002496 133 -------------------------------------------------------------MCTQIF-EGH--------- 141 (915)
Q Consensus 133 -------------------------------------------------------------~~~~~~-~~~--------- 141 (915)
....++ ..|
T Consensus 230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 000000 000
Q ss_pred --------------CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCC-------
Q 002496 142 --------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGG------- 197 (915)
Q Consensus 142 --------------~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~------- 197 (915)
-.....+.|+| ....+.+...|..+++||++..+.+ ..+-.|...|+.+.-.|-.
T Consensus 310 ~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a 388 (1080)
T KOG1408|consen 310 SQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAA 388 (1080)
T ss_pred ccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccc
Confidence 01134567777 6778888899999999999875433 3344577777766655511
Q ss_pred --CcCEEEEEeCCCeEEEEECCCCc---EEEE----------------------------------ecCCccCeEEEEEe
Q 002496 198 --DKPYLITGSDDHTAKVWDYQTKS---CVQT----------------------------------LEGHTHNVSAVCFH 238 (915)
Q Consensus 198 --~~~~l~~~~~dg~i~iwd~~~~~---~~~~----------------------------------~~~~~~~i~~i~~~ 238 (915)
....+++++.|++|++||+..+. ..+. .-.....+.+++.+
T Consensus 389 clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS 468 (1080)
T KOG1408|consen 389 CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS 468 (1080)
T ss_pred cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC
Confidence 01158999999999999987521 1100 00123458999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC---CCEEEEEecCCeEEEecCCCcceeEecCCCcEE
Q 002496 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS---SRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~ 315 (915)
|+|++|++|...|.+++|++...+....+..|...|.++.++.- .++||+++.|..|.++.....
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn------------ 536 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN------------ 536 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc------------
Confidence 99999999999999999999999999999999999999999864 568889999988887421110
Q ss_pred EEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC--CEEEEEcCCcEEEEEeec----cc----
Q 002496 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG--RFVVVCGDGEYIIYTALA----WR---- 385 (915)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g--~~lav~~~~~~~i~~~~~----~~---- 385 (915)
......+..|...++++.|--+| .....|+-.+.+.|+... .+
T Consensus 537 ---------------------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 537 ---------------------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred ---------------------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 00112235566677888888777 556666644444444322 11
Q ss_pred ---ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccc-eeeeec-----------CcccceeecCcEEEEeeCC-eE
Q 002496 386 ---NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-KRSVRP-----------TFSAERIYGGTLLAMCSND-FI 448 (915)
Q Consensus 386 ---~~~~~~~~~~~~s~~g~~l~~~~-~~~i~v~~~~~~~-~~~~~~-----------~~s~~~i~~g~~La~~~~~-~v 448 (915)
........+++..|..+++++.+ |..|+||+++... .+.++- ...|. |-+||+...| ++
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl 665 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTL 665 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC----ccEEEEeecCCce
Confidence 11235567888899999999888 8999999966322 222222 33444 7789888777 99
Q ss_pred EEEeccCCcEEEEEEc---cccEEEEcCCCCEEEEEeCCeEE-EEEecH
Q 002496 449 CFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFY-ILKYNR 493 (915)
Q Consensus 449 ~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~-~~~~~~ 493 (915)
+|||..+|+++.+..+ -|+.+.|.+|.+.|++++.|+.+ +|....
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999988775 68999999999998888777655 555443
No 61
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=278.35 Aligned_cols=281 Identities=25% Similarity=0.440 Sum_probs=241.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (915)
...|.++.|+++|+.+++++.++.+++|+..+++ ....+.+|...|.+++|+|++.++++++.|++|++||+......
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 6789999999999999999999999999997777 67777899999999999999999999999999999999555578
Q ss_pred EEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002496 135 TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 135 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.+++.+|...|++++|+| .++.+++|+.|++|++||++++++...+.+|..+|++++|++++. +|++++.|+.|++|
T Consensus 239 ~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~--~l~s~s~d~~i~vw 315 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN--LLVSASYDGTIRVW 315 (456)
T ss_pred EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC--EEEEcCCCccEEEE
Confidence 889999999999999999 669999999999999999999999999999999999999999988 79999999999999
Q ss_pred ECCCCc--EEEEecCCccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc---EEEEEEecCCCEEE
Q 002496 215 DYQTKS--CVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAIGYMKSSRRIV 287 (915)
Q Consensus 215 d~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~ 287 (915)
|+.++. ++..+..+... +++++|+|++.++++++.|+.+++||+..+.....+..+... +.+...++.+.+++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 999998 56777766555 999999999999999999999999999999998888887653 44556678899999
Q ss_pred EEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCc-ccCCceEEECCCCC
Q 002496 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC-DLYPQSLKHNPNGR 366 (915)
Q Consensus 288 ~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~s~~g~ 366 (915)
+|+.|+.|.+|..... ..+. .+..+ ...+..+.++|...
T Consensus 396 sg~~d~~v~~~~~~s~------------------------------------~~~~----~l~~h~~~~~~~~~~~~~~~ 435 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSG------------------------------------GILQ----RLEGHSKAAVSDLSSHPTEN 435 (456)
T ss_pred EEeCCceEEEEeCCcc------------------------------------chhh----hhcCCCCCceeccccCCCcC
Confidence 9999999999742221 1110 01222 34556778888888
Q ss_pred EEEEEc---CCcEEEEE
Q 002496 367 FVVVCG---DGEYIIYT 380 (915)
Q Consensus 367 ~lav~~---~~~~~i~~ 380 (915)
+++..+ |+.+.+|.
T Consensus 436 ~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 436 LIASSSFEGDGLIRLWK 452 (456)
T ss_pred eeeecCcCCCceEEEec
Confidence 888776 66777774
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.4e-30 Score=235.69 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=245.6
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~ 89 (915)
.+.||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+-++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCC------eeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
+.+..++. ..+|..+.|+++|++++.++++ +.|.++|++.. ..+...+..+.+.++.+-|.| -+..|
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 99999884 6689999999999988877654 67999999832 244555666778999999999 89999
Q ss_pred EEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002496 159 ASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
++|..||.|.+||++++.. +.....|...|+.++++++.. ++++++.|.+-++||..+-++++++. ...+|.+.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--eEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 9999999999999999754 444577889999999999887 89999999999999999999999887 5678999999
Q ss_pred eCCCCEEEEEEcCCc--E------------EEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 238 HPELPIIITGSEDGT--V------------RIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~--v------------~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+|....++.|+.... | ++|++-..+.+..+++|.++|.+++|+|+|+..++|+.||.|++.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 998777776653221 1 222322233456778999999999999999999999999999983
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=231.83 Aligned_cols=279 Identities=17% Similarity=0.263 Sum_probs=247.2
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE--EEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVAR-KQWVVAGADDMFIRVY 84 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vw 84 (915)
.+.+.+|...|.+++|+-+|..|++|+.|+++.+|++......+. ..+|.+.|-.++|+|. ...+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 377889999999999999999999999999999999988866554 4578889999999884 5789999999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECC
Q 002496 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
|..+++++..+....+.| -+.|+|+|.++++++.|..|.+.|.++. +..... .....+.-++|+- ++++|+.....
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeehh-cccceeeeeeecC-CCCEEEEecCC
Confidence 999999998887555544 5899999999999999999999999876 333222 2345577888985 78888888888
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002496 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 165 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
|+|.|....+-+++..++.|.....|+.|+|+|+ |+++|+.|..+.+||++..-|++.+..+.-+|..+.|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCC
Q 002496 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 293 (915)
+++|+|..|-|=++.+|..+..++.. ++..+++|+|...+||.+++|.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccCccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999988755 7889999999999999888764
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3e-28 Score=291.08 Aligned_cols=259 Identities=17% Similarity=0.280 Sum_probs=219.3
Q ss_pred CCcEEEEECCCCceeEEE-----EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----c----eeEEEecCCCCE
Q 002496 36 SGTVCIWNYQSQTMAKSF-----EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----D----KVKVFEAHTDYI 102 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~----~----~~~~~~~~~~~i 102 (915)
+|.+++|+..+......+ ..|...|.+++|+|+|++|++|+.|+.|+||+..+. . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888988766554433 348889999999999999999999999999997542 1 122233 35679
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE
Q 002496 103 RCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 103 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 181 (915)
.+++|++. +.+|++++.||+|++||+.++ .....+.+|...|.+++|+|.++++|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 789999999999999999987 6677788999999999999867899999999999999999998887777
Q ss_pred ecCCCCeeEEEEEeC-CCcCEEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 182 DAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.. ...+.++.|++. +. ++++|+.||.|++||++++. .+..+.+|...|+++.|. ++.+|++++.|+.|++||+.
T Consensus 615 ~~-~~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KT-KANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ec-CCCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 64 467899999654 44 89999999999999998765 567788899999999997 67899999999999999987
Q ss_pred C------cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002496 260 T------YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 260 ~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~ 300 (915)
. +..+..+.+|...+..++|+|++++|++|+.||.+.+|..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 4 3567788888888999999999999999999999999853
No 65
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=9.3e-28 Score=250.23 Aligned_cols=477 Identities=18% Similarity=0.283 Sum_probs=325.1
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCCC
Q 002496 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 5 ~~~~~~l~~h~~~V~~v~~sp~~~---~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~~dg 79 (915)
..+...+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++..... ..+.+|...+ ++++.......+.+.|+
T Consensus 44 ~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~--~cv~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 44 ILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC--VCVVARSSVMTCKAADG 121 (764)
T ss_pred ceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE--EEEEeeeeEEEeeccCc
Confidence 345667899999999999999887 8999999999999999854433 3445554444 33433333333335666
Q ss_pred eEEEEECCC--------------------------------------------------CceeEEEecCCCCEEEEEEcC
Q 002496 80 FIRVYNYNT--------------------------------------------------MDKVKVFEAHTDYIRCVAVHP 109 (915)
Q Consensus 80 ~i~vwd~~~--------------------------------------------------~~~~~~~~~~~~~i~~l~~s~ 109 (915)
.+.+||.+. .+.+..+.+|.+.|++++|..
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR 201 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence 677776521 133456678999999999987
Q ss_pred CCC---EEEEEEcCCeEEEEECCCCe--------------------eEE----------EEeecCCccEEEEEEecCCCC
Q 002496 110 TLP---YVLSSSDDMLIKLWDWEKGW--------------------MCT----------QIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 110 ~~~---~l~~~~~dg~i~iwd~~~~~--------------------~~~----------~~~~~~~~~i~~~~~~p~~~~ 156 (915)
.+. +|+++|.|..|+||.+.-+. ... ..+.+|...|+++.|+| .+.
T Consensus 202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~ 280 (764)
T KOG1063|consen 202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGL 280 (764)
T ss_pred cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chh
Confidence 554 78899999999999764221 111 12348999999999999 788
Q ss_pred EEEEEECCCcEEEEECCCCCCceE-------EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC---cEEEEec
Q 002496 157 TFASASLDRTIKIWNLGSPDPNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLE 226 (915)
Q Consensus 157 ~l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 226 (915)
.|++++.|.++.+|......-+.. +.+...+.....|+|+++ .+++-+..|..++|..... .....+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccceeeccccc
Confidence 899999999999998765532221 123345678899999987 7888899999999984332 2445567
Q ss_pred CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCC
Q 002496 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT----YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 227 ~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~ 302 (915)
+|...|..++|+|.|.+|++.|.|.+-|+|-.-. ...+..-+.|...+.|+++-+....+++|.++..++++....
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 8999999999999999999999999999987441 123333455667889999998767788888888888852111
Q ss_pred c-----------------------ceeEecCCCcEEEE--eeCceE---EEEe--eecccc-eeccCCcee-----eeee
Q 002496 303 E-----------------------PVASMDNSGKIIWA--KHNEIQ---TVNI--KSVGAD-YEVTDGERL-----PLAV 346 (915)
Q Consensus 303 ~-----------------------~~~~~~~~g~~~~~--~~~~i~---~~~~--~~~~~~-~~~~~g~~~-----~~~~ 346 (915)
. .+..+-.+.+.++. ...... .+.. ...... ..-+..+.+ -...
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 0 01111111222221 000000 0000 000000 000000000 0112
Q ss_pred eecCCcccCCceEEECCCCCEEEEEc------CCcEEEEEeecccccC-----ccceeEEEEecCCcEEEEec-CCeEEE
Q 002496 347 KELGTCDLYPQSLKHNPNGRFVVVCG------DGEYIIYTALAWRNRS-----FGSALEFVWSSDGEYAVRES-SSKIKI 414 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~s~~g~~lav~~------~~~~~i~~~~~~~~~~-----~~~~~~~~~s~~g~~l~~~~-~~~i~v 414 (915)
..+-.|...+.+++.||+|+++|++. ...|.+|....|.... .-.++.++|||||+||++.+ |.++.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 33456777889999999999999986 3568899998886443 35789999999999999988 899999
Q ss_pred eccC-----------ccceeeeec--CcccceeecCcEEEEeeCC-eEEEEeccCC--cEEEEE-----EccccEEEEcC
Q 002496 415 FSKN-----------FQEKRSVRP--TFSAERIYGGTLLAMCSND-FICFYDWAEC--RLIRRI-----DVTVKNLYWAD 473 (915)
Q Consensus 415 ~~~~-----------~~~~~~~~~--~~s~~~i~~g~~La~~~~~-~v~~~d~~~~--~~i~~~-----~~~i~~v~~s~ 473 (915)
|... .+.+..+.+ .|+|+ +.++++++.| +|.||..... +.+.++ ...|+.++|.+
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 9743 223333433 88998 8889999999 9999998877 444332 24788888775
Q ss_pred -----CCCEEEEEeCCeEEEEE
Q 002496 474 -----SGDLVAIASDTSFYILK 490 (915)
Q Consensus 474 -----dg~~la~~~~~~~~~~~ 490 (915)
.+..|+.+-+.+.+++|
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred cccccccceEEEEecccEEEEE
Confidence 23367777777766655
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=254.60 Aligned_cols=285 Identities=21% Similarity=0.346 Sum_probs=251.0
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
.....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++.+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3456788899999999999998899999999999999987766 67788888899999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
|+++..+...++.+|.+.|+++.|......+++|+.|.+|++||+... .+...... ...+..++.+ ...+++|..
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec---ceeeeeccc
Confidence 999999999999999999999999988777999999999999999986 44444332 2345566654 567899999
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC----ccCeEEEEEeC
Q 002496 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHP 239 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~i~~~~ 239 (915)
|++|++||+++..+......+. .|+++..++++. -+++++.|.++.+.|+++......+... ....+.+.|||
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCe--EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999999888887654 899999999988 4888899999999999998887777542 23488999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc--EEEEEEecCCCEEEEEecCCeEEEe
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLER--VWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
++.|+++||.||.|+||++.++++...+...... |++++|+|.|..++.++.++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999888876555 9999999999999999999999887
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-28 Score=229.69 Aligned_cols=290 Identities=18% Similarity=0.284 Sum_probs=248.7
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~--dg~i 81 (915)
++...+.+..-.++|.++.|+++|.+|++++.|..++|||..+++.++++..++-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 45667778888899999999999999999999999999999999999999988888999999988888888877 8899
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEE
Q 002496 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++.. .+...+..... ..++|.| .|-++|++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp-~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDP-EGLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECC-CCcEEEEe
Confidence 99999999999999999999999999999999999999999999999965 45444443333 3578999 89899999
Q ss_pred ECCCcEEEEECCCC--CCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCe---E
Q 002496 162 SLDRTIKIWNLGSP--DPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV---S 233 (915)
Q Consensus 162 ~~dg~i~v~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i---~ 233 (915)
.....|++||+++- .|..++. ......+.+.|+|+|+ +|+.+...+.+++.|.-+|..+.++..+...- .
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88889999999874 3444443 3467789999999998 79999999999999999999988888765432 5
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
..+|+||++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-..+++ .+..+.+|+..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS--ASSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeee--cCceEEEEecc
Confidence 678999999999999999999999999999998888 4788999999997655554 45567777644
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-29 Score=259.40 Aligned_cols=273 Identities=20% Similarity=0.331 Sum_probs=245.5
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec-C
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-H 98 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~ 98 (915)
-++|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 35688 455788887 45799999999987776666688999999999999999999999999999999999999988 9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc
Q 002496 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~ 178 (915)
...|-+++|+ +..+.+|+.+|.|..+|++........+.+|...|..+.|++ +++++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 567999999999999999987555556888999999999999 9999999999999999999999999
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEe--CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE--EcCCcEE
Q 002496 179 FTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVR 254 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~--~~dg~v~ 254 (915)
..+..|...|..++|+|-..+ +|++|+ .|++|++||..++..+..+. ....|+++.|++..+-|+++ ..++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999998766 788875 58999999999999998887 45679999999998766654 4567899
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999999999999999999999999999999999999999984
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-29 Score=228.47 Aligned_cols=279 Identities=25% Similarity=0.362 Sum_probs=234.5
Q ss_pred EEEEEcCC-CCeEEEEE-------cCCcEEEEECCCCceeEEEEe--cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002496 19 KSVDLHPS-EPWILASL-------YSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 19 ~~v~~sp~-~~~la~~~-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~ 87 (915)
.++.|||- .++||++. .+|++.|.++...+-+..+.. -...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889993 33455442 378999999865554544432 45679999999965 567888999999999964
Q ss_pred -CCceeEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCC
Q 002496 88 -TMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 -~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
..+++..++.|...|.++.|++. +..++++|.||+|++|+...+ ...+++.+|...|....|+|..++.|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 23567888999999999999985 456788899999999999877 667789999999999999999999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCC-CE
Q 002496 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPEL-PI 243 (915)
Q Consensus 166 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~-~~ 243 (915)
++++||++.......+..|...+.|+.|+.-... ++++|+.|+.|+.||+++- .++..+.+|.-.|..+.|||.. .+
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999887666678999999999999987654 8999999999999999874 5788889999999999999965 58
Q ss_pred EEEEEcCCcEEEEeCCCc-ceeeeeecCCccEEEEEEecC-CCEEEEEecCCeEEEec
Q 002496 244 IITGSEDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~v~i~~ 299 (915)
|++++.|-+++|||...+ ..+.+...|.+-+..+.|++- +..+|..+.|+.+.+|.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 999999999999998744 466777788888999999885 67899999999999984
No 70
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.6e-28 Score=252.77 Aligned_cols=714 Identities=16% Similarity=0.154 Sum_probs=438.8
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002496 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~dg~ 80 (915)
..+.+.++|.||++.|.-+.|+...+.|-+...+|.|.||-+-.|....... -..+-|.+++|+.+|..+++...||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 4567889999999999999999999999999999999999987775543332 24567999999999999999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee------E----EEEeecCCccEEEEEE
Q 002496 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------C----TQIFEGHSHYVMQVTF 150 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~----~~~~~~~~~~i~~~~~ 150 (915)
|.|=.++.. .+.--.-.......+.|++|...++.+-.+|.+.++|...+.. + ...+......|-.+.|
T Consensus 139 vIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeeccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 998887643 3322111122345789999999999999999999999765411 1 1112223344667777
Q ss_pred ec-------CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCC---------CeEEEE
Q 002496 151 NP-------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---------HTAKVW 214 (915)
Q Consensus 151 ~p-------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iw 214 (915)
.. .+...|+++..+|.+.+..-.+......+. ..-.+..+.|+++|. +|++++.+ +.|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCc--EEEEccCcccccCccccceEEEe
Confidence 52 266789999999999887654433333333 336788899999998 78887754 356676
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--------eeeeeecCCccEE-----------
Q 002496 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--------LENTLNYGLERVW----------- 275 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~----------- 275 (915)
.. -|+.+.+++.....|++++|-..|-.++.+- |+.|.+=+++..- .+........+-.
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 64 4888889988889999999998887766654 6677665554211 1111111111112
Q ss_pred ----------EEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeee
Q 002496 276 ----------AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLA 345 (915)
Q Consensus 276 ----------~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~ 345 (915)
+++++.+.-.|+.-.++|.+.-. ..+..-+ .+.+..+- .+-|..+
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~-------s~le~~~--------~~~~l~LC-------NSIGT~l--- 427 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEY-------STLENRS--------RVYFLQLC-------NSIGTSL--- 427 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcch-------hhhhccc--------ceEEEeee-------cccCCcC---
Confidence 22222222222222222222110 0000000 01111110 0111111
Q ss_pred eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccccc------------C-------------------------
Q 002496 346 VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR------------S------------------------- 388 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~------------~------------------------- 388 (915)
......+......-+|..+++++...+.+|.....+.. .
T Consensus 428 ----D~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~ 503 (1189)
T KOG2041|consen 428 ----DYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS 503 (1189)
T ss_pred ----CCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC
Confidence 11112233444555678899999999999954322100 0
Q ss_pred ccceeEEEEecCCcEEEEecCCeEEEeccCccceeeeecCcccc--ee--e-cCcEEEEeeCC-eEEEEecc---CCcEE
Q 002496 389 FGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAE--RI--Y-GGTLLAMCSND-FICFYDWA---ECRLI 459 (915)
Q Consensus 389 ~~~~~~~~~s~~g~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~~--~i--~-~g~~La~~~~~-~v~~~d~~---~~~~i 459 (915)
..++..++.| |.-+++...+|.|+-|++.......-. ..+|. .+ . ....||+..-- .+.|.|+. +|..+
T Consensus 504 ~DpICAl~~s-dk~l~vareSG~I~rySl~nv~l~n~y-~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql 581 (1189)
T KOG2041|consen 504 KDPICALCIS-DKFLMVARESGGIYRYSLNNVVLTNSY-PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQL 581 (1189)
T ss_pred CCcceeeeec-ceEEEEEeccCceEEEEecceeeeecc-ccCchheeEeeccCcchhhhhhhhceeeeeecccccCccee
Confidence 0122233222 223344444778887776543332211 11111 11 1 24455555443 66677765 45444
Q ss_pred EEEE----ccccEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCE
Q 002496 460 RRID----VTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDC 534 (915)
Q Consensus 460 ~~~~----~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~ 534 (915)
.-+. -.|+.+.|..|. .++|...+.++++++-| +..++++..|+++.|+.+. |++... +++
T Consensus 582 ~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn--------dpeEp~s~sGyIc~FedLe-----itsVll-d~I 647 (1189)
T KOG2041|consen 582 KLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN--------DPEEPSSVSGYICLFEDLE-----ITSVLL-DKI 647 (1189)
T ss_pred eeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc--------CccccccccceEEEeeceE-----EEEEEH-hhH
Confidence 4222 379999999765 45677788888888733 4556777889988888762 333322 233
Q ss_pred EEEEccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCC
Q 002496 535 FIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSI 614 (915)
Q Consensus 535 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i 614 (915)
+. ++......+.+... +..++..+.++....-.....++.++.+...|. +.-..++.+.+++.|+..+ +
T Consensus 648 l~-~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLWr-----llAe~Al~Kl~l~tAE~AF--V 716 (1189)
T KOG2041|consen 648 LL-TPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWR-----LLAEYALFKLALDTAEHAF--V 716 (1189)
T ss_pred hc-CcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHHH-----HHHHHHHHHHhhhhHhhhh--h
Confidence 22 23333333333222 222222221111111111222332322222221 1224566677777766554 2
Q ss_pred CcchH-------------------HHHHHHHHhCCChhhhhhcccCcc---ceeeeecccCCHHHHHHHHHHcCC-----
Q 002496 615 PKEHH-------------------NSVARFLESRGMIEEAIEVATDPD---YRFELAIQLGRLEVAQEIATEVQS----- 667 (915)
Q Consensus 615 ~~~~~-------------------~~~~~~~~~~~~~~~al~~~~~~~---~~f~~~l~l~~~~~A~~~a~~~~~----- 667 (915)
....+ ..+..| .|..++|-...-|++ .+.+|++++|+|-..+++.+...+
T Consensus 717 rc~dY~Gik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~ 793 (1189)
T KOG2041|consen 717 RCGDYAGIKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDE 793 (1189)
T ss_pred hhccccchhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchH
Confidence 22222 122222 356667766655554 446999999999999999997433
Q ss_pred --hhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHH--------------HHHHHHHHHHcCCchHHHH
Q 002496 668 --ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEG--------------ISKLASLAKEQGKNNVAFL 731 (915)
Q Consensus 668 --~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~--------------~~~l~~~~~~~~~~~~a~~ 731 (915)
+..|+.+|+......+++.|.++|.+++|.++.+-++....+.+. +..++++...-|++.+|..
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 557899999888888888998888888888777777666555444 4567778889999999999
Q ss_pred HHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhc
Q 002496 732 CLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (915)
Q Consensus 732 ~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~ 781 (915)
+|+..++...|+.-+...++|.+|+++|+.+...++..++...+..|...
T Consensus 874 a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 874 AYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998887777643
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.9e-28 Score=254.09 Aligned_cols=776 Identities=16% Similarity=0.144 Sum_probs=442.3
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCeEEEEEc----CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002496 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 76 (915)
|.+.++.+..+....+.-+-.+|||..+++|+++- .|.|.||- ++|++..... .+-.+++++|+|..-.|+.|.
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhcc
Confidence 45555555555555555566789999999999864 68999997 7777544332 223467799999999999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE-EEEeecCC--ccEE--EE---
Q 002496 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHS--HYVM--QV--- 148 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~--~~i~--~~--- 148 (915)
.-|.+.+|..++.+.......|+.+|..+.||++|..++++..-|.+.+|....-... ...+..|. ..++ |.
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 9999999999887777777789999999999999999999999999999987621000 00000010 0000 00
Q ss_pred -------------------------EE-------------ecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002496 149 -------------------------TF-------------NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 149 -------------------------~~-------------~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 190 (915)
-| .| ++..|..++.+|+|+..|- +++.....+.. +.| .
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~d-S~v-Q 234 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLD-SEV-Q 234 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcC-CCcEEEEEEcc-chH-H
Confidence 01 12 5667778888888877764 23322222211 111 1
Q ss_pred EEEEeCCCcCEEEEEeCCCeEEEEECC----------------C-------------C----cEEEEecCCccCeEEEEE
Q 002496 191 VDYFTGGDKPYLITGSDDHTAKVWDYQ----------------T-------------K----SCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~----------------~-------------~----~~~~~~~~~~~~i~~i~~ 237 (915)
+-|.+... .+++.-.+-++.++-.. . | .....+ .....+.++++
T Consensus 235 mLf~~~~e--ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY 311 (1416)
T KOG3617|consen 235 MLFMGYCE--AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCY 311 (1416)
T ss_pred HHHhcccc--eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEE
Confidence 11221111 11111111111111110 0 0 000001 13456999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCc-------ceeeeeecC---CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeE
Q 002496 238 HPELPIIITGSEDGTVRIWHATTY-------RLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~ 307 (915)
+..+..++.|...|.+.+|--.+. .-.+.++.. .+.|..+.|.|-.+.+++.+....+.+. +.++.+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~ 388 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTV 388 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHH
Confidence 999999999999999999963322 223344433 4679999999988888887777666652 222111
Q ss_pred ecCCCcE--EEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc
Q 002496 308 MDNSGKI--IWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR 385 (915)
Q Consensus 308 ~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~ 385 (915)
... ++. +....+.+....- .+|..- .-..++.+..++.+. .-|+++....+.+|++....
T Consensus 389 ~h~-~~~~A~q~ss~S~~L~hc---------~sGv~~------~l~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG 450 (1416)
T KOG3617|consen 389 KHR-GKMAAIQTSSNSFTLLHC---------TSGVSQ------DLKLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSG 450 (1416)
T ss_pred HHh-hhhHHhhhcCCceEEEee---------ccchhh------hhhhccchhhheecc--ceEEEEcCceEEEEEecccc
Confidence 110 111 1111122211111 011100 011233445556555 45888889999999886221
Q ss_pred ccCccce-----eEEEEecCCcEEEEecCCeEEEeccCccceeeeec-Ccccceee---cCcEEEEeeCC-eEEEEeccC
Q 002496 386 NRSFGSA-----LEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWAE 455 (915)
Q Consensus 386 ~~~~~~~-----~~~~~s~~g~~l~~~~~~~i~v~~~~~~~~~~~~~-~~s~~~i~---~g~~La~~~~~-~v~~~d~~~ 455 (915)
......+ .+.+..--++-+.+..+..|.++.....-...+.. ......+. .|.+|++.+.. .+.-||+..
T Consensus 451 ~la~~~~~tF~cet~~la~~nqN~ycies~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr 530 (1416)
T KOG3617|consen 451 SLATIQCTTFSCETTSLAIVNQNLYCIESDKVFVRTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSR 530 (1416)
T ss_pred hhHHHhhhhhccccchHhHhhcceEEeccCcEEEEecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhh
Confidence 1100011 11111112233334444556666544332222221 11111111 46788887766 555566553
Q ss_pred CcEE--EEE---------EccccEEEEcCCCCEEEE--Ee-----CCeEEEEEecHHHHHH--hhhCCCCCCccccccce
Q 002496 456 CRLI--RRI---------DVTVKNLYWADSGDLVAI--AS-----DTSFYILKYNRDVVSA--YLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 456 ~~~i--~~~---------~~~i~~v~~s~dg~~la~--~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f 515 (915)
.++- ... .+.+..+..+..|.-+.+ +. -+.++.|+|.+..+.. .++++..-..++.
T Consensus 531 ~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~---- 606 (1416)
T KOG3617|consen 531 AELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESS---- 606 (1416)
T ss_pred hcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCcccccccccc----
Confidence 3321 111 135666667766554322 22 2457788887665543 2222111111111
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEE----CCEEe-EEEecc------cceEEEEEEeeCC-EEEEEe--cCC
Q 002496 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCV----GGEVT-TMFHLD------RPMYLLGYLASQS-RVYLID--KEF 581 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~----~~~~~-~~~~~~------~~~~~~~~~~~~~-~l~~~d--~~~ 581 (915)
......+.|+. +..++..+- .++.. .-..+. ..+.++.++.... .+.+.. ...
T Consensus 607 ------ts~pvr~fWD~-------~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~ 673 (1416)
T KOG3617|consen 607 ------TSPPVRFFWDE-------NEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKN 673 (1416)
T ss_pred ------CCCCceeeecC-------CCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccCC
Confidence 01111233543 222221110 00000 000000 0111221111111 111110 000
Q ss_pred ceEEEEecchHHHHHHHHHccCHHHHhhhc--CCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHH
Q 002496 582 NVMGYTLLLSLIEYKTLVMRGDLERANEIL--PSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQ 659 (915)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l--~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~ 659 (915)
..-.--+...++.|-. .|+.-|+-..-. ++|+. ...++-|...-..+.+.+.++++.+.|.+++..|++|.|+
T Consensus 674 ~~~~~Ll~~~VPn~yf--vRk~~~d~ed~~ee~~i~~---~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~Af 748 (1416)
T KOG3617|consen 674 LHCGKLLSVSVPNFYF--VRKSGWDEEDNREERTIGK---TLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAF 748 (1416)
T ss_pred CCccceeeeecCceEE--Eecccccccccccccccch---hhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHH
Confidence 0000011223333211 122222211000 11222 2345566666667778888899999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH-HHHHHHHHHHHHcCCchHHHHHHHHcCC
Q 002496 660 EIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA-EGISKLASLAKEQGKNNVAFLCLFMLGK 738 (915)
Q Consensus 660 ~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~-~~~~~l~~~~~~~~~~~~a~~~~~~~g~ 738 (915)
+.++.+.++..|..+|.+|.+..++++|..|+..+++..++.-|.+...+. +.-.+.|-+|.+.|+...|..+|.++.+
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888876665 4556889999999999999999999999
Q ss_pred HHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhh--------------------------cChhhhhhcCCC
Q 002496 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQK--------------------------VNPKAAESLADP 792 (915)
Q Consensus 739 ~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~--------------------------~~~~~a~~l~~~ 792 (915)
+|---++|+..|+|++|+++|.++-.-++..-.=.+.++|.. -+++.-++....
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 999999999999999999999876543333333233333321 122333444444
Q ss_pred ccCCCccccHHHHHHHHHHHhhccCCCCCCcccccc
Q 002496 793 EEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNH 828 (915)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 828 (915)
...+.|+..|++.+|..|+++.|..-|..|+||-+.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 567789999999999999999999999999999664
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-28 Score=223.57 Aligned_cols=297 Identities=18% Similarity=0.260 Sum_probs=239.3
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002496 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 52 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.+.+|+.|++.+.++.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecCCccEEEEEEecCCCCEEEEEEC-----CCcEEEEECC-------CCCCceEEecCCCCeeEEEEEeCCCc
Q 002496 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----DRTIKIWNLG-------SPDPNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg~i~v~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
++...+. ...+|..+.|++ ++++++.+.. .+.|.++|++ +.+|...+..+...++.+-|.|-++
T Consensus 85 -k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 85 -KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE- 160 (327)
T ss_pred -cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-
Confidence 4444443 457799999999 7777776654 3679999997 4567888888899999999999988
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEE
Q 002496 200 PYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
+|++|..+|.|.+||.++|. .+.+.+.|...|+.++++|+..++++++.|.+-++||+.+...++++... .+|.+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 89999999999999999975 56666789999999999999999999999999999999999999988766 7899999
Q ss_pred EecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCce
Q 002496 279 YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQS 358 (915)
Q Consensus 279 ~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 358 (915)
++|....++.|+.....-+-....+ .|+. +-+.+ ++.-. -.+-....|-.++.+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r-------~GKF------EArFy---------h~i~e----EEigrvkGHFGPINs 292 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTR-------AGKF------EARFY---------HLIFE----EEIGRVKGHFGPINS 292 (327)
T ss_pred cccccceEEecCCceeeeeeeeccc-------ccch------hhhHH---------HHHHH----HHhccccccccCcce
Confidence 9999888888775544433110000 0000 00000 00000 011223567778889
Q ss_pred EEECCCCCEEEEEc-CCcEEEEE
Q 002496 359 LKHNPNGRFVVVCG-DGEYIIYT 380 (915)
Q Consensus 359 l~~s~~g~~lav~~-~~~~~i~~ 380 (915)
++|+|+|+..++++ ||.+.++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred eEECCCCcccccCCCCceEEEEE
Confidence 99999998888888 77777653
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=245.57 Aligned_cols=285 Identities=18% Similarity=0.299 Sum_probs=243.5
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~-~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
+.-.|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++..|.+.|+.+++.. ..++++++|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678999999999999987 6899999999999999999999999999999999999987 6688999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCC
Q 002496 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
++. ...+++.+ ...+..+.-+..+..+++|+. .|.|||.... .+.+.+.-....|.++.|+|...+.|++|..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 864 46666654 445677777777788888887 5999999766 566667667778999999998889999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEE
Q 002496 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
.|.+||++.+.++..+. ....-+.++|+|.+- .+++|+.|..++.||++.. .++....+|.+.|.++.|+|.|+-+
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCcccc--ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 99999999999887765 344558899999665 5899999999999999874 5678888999999999999999999
Q ss_pred EEEEcCCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 245 ITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
++||.|.+|+||..+.+..-..+. .....|.++.||.|.+++++|++|+.|++|-+.
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999988765433322 234679999999999999999999999999543
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=247.98 Aligned_cols=288 Identities=21% Similarity=0.365 Sum_probs=236.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~dg~i~ 82 (915)
..++.+|+..|.++++.|.|..|++|+.|..|++||+.... ..+.+. .....|+++.|++.|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678899999999999999999999999999999987542 222232 2345799999999999999999999999
Q ss_pred EEECCCCceeEEE------------ecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEee-----cCCcc
Q 002496 83 VYNYNTMDKVKVF------------EAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHY 144 (915)
Q Consensus 83 vwd~~~~~~~~~~------------~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~ 144 (915)
|+|-...+..... ++|...++|.+|+|.. ..+++++.||++++||+.......+++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997654443322 4788999999999965 4688999999999999987655555443 23456
Q ss_pred EEEEEEecCCCCEEEEEECCCcEEEEECCCCC--Cc-eEEecCCC--CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002496 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PN-FTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~--~~-~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+++++|+| ++..|++|+.||.|.+|+..+.. +. ..-..|.. .|+|+.|+++|+ +|++-+.|+++++||++..
T Consensus 320 ~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence 89999999 89999999999999999985533 22 22356766 899999999998 8999999999999999874
Q ss_pred -cEEEEecCC--ccCeEEEEEeCCCCEEEEEEc------CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 220 -SCVQTLEGH--THNVSAVCFHPELPIIITGSE------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 -~~~~~~~~~--~~~i~~i~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
+++....+. ..+-+.++|||+.++|++|+. .|.+.+||..+...+..+......|..+.|+|.-+.|.+|+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 455555442 334678899999999999864 46799999999999999998889999999999999999999
Q ss_pred cCCeEEEe
Q 002496 291 DEGTIMVK 298 (915)
Q Consensus 291 ~dg~v~i~ 298 (915)
.||.+.++
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999985
No 75
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.5e-28 Score=242.17 Aligned_cols=276 Identities=19% Similarity=0.384 Sum_probs=237.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee----EE-------------E-EecCCCEEEEEEeCCC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA----KS-------------F-EVTELPVRSAKFVARK 69 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~----~~-------------~-~~~~~~v~~l~~s~~~ 69 (915)
.+.+..|.-+|++|+++|+.+++++++.+|+|.=|++.+|+.. .. - +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3556789999999999999999999999999999999887632 11 0 2567789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEE
Q 002496 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 70 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 149 (915)
++|++|+.|..|.||+..+++.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.. ....++.+|...|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999988889999999999999999876 66777889999999998
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--
Q 002496 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-- 227 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 227 (915)
... ....+.+|+.|+++++|++. ......+.++.+.+.|++|..+. .+++|+++|.|.+|++...+++.+...
T Consensus 294 aL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccc
Confidence 876 67777778899999999994 34456778889999999998766 499999999999999998888776532
Q ss_pred ----------CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 228 ----------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 228 ----------~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
+...|++++..|...++++|+.+|.|++|-+..+ +++..+. -.+-|++++|+++|+++++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 1237999999999999999999999999998877 3444554 347899999999999887764
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=4.3e-29 Score=250.10 Aligned_cols=249 Identities=18% Similarity=0.329 Sum_probs=215.7
Q ss_pred CceeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEE
Q 002496 47 QTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 124 (915)
.+.+.++.+|...|+++.|.| .+.+|++++-|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356778899999999999999 889999999999999999876 889999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002496 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+||.++| .+...+. ....+.|+.|+|++.+.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|.+++. .+++
T Consensus 284 lwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~--rFis 359 (503)
T KOG0282|consen 284 LWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR--RFIS 359 (503)
T ss_pred eeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc--eEee
Confidence 9999999 5555554 3456899999996669999999999999999999999999999999999999999988 6999
Q ss_pred EeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc---eeeeeecCC--ccEEEEE
Q 002496 205 GSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---LENTLNYGL--ERVWAIG 278 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~--~~v~~i~ 278 (915)
.++|++++||+.+.+-.+..+. .......++..+|+++++++-+.|+.|.+|.+...- ....+.+|. +.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999998877655433 344567789999999999999999999999864321 223344442 4567799
Q ss_pred EecCCCEEEEEecCCeEEEec
Q 002496 279 YMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 279 ~~~~~~~l~~~~~dg~v~i~~ 299 (915)
|||||.+|++|..+|.+.+|.
T Consensus 440 fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred EcCCCCeEEeecCCccEEEee
Confidence 999999999999999999974
No 77
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2e-29 Score=241.05 Aligned_cols=228 Identities=27% Similarity=0.490 Sum_probs=206.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|.|+.+ |...+++|..|++|+|||.++..+...+.+|++.|.|+.|. .+.|++|+.|.+|++||++++ .+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-chh
Confidence 3467999988 55679999999999999999999999999999999999996 458999999999999999999 778
Q ss_pred EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002496 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.++.+|...|..+.|+ ++++++++.|.++.+||+.+...+ ..+.+|...|+.+.|+. + |+++++.|.+|+
T Consensus 271 ~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVsASgDRTik 343 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVSASGDRTIK 343 (499)
T ss_pred hHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEEecCCceEE
Confidence 8888999999999996 579999999999999999876532 45678999999999952 2 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002496 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (915)
+|++.++++++++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|..-|.++.|. .+.+++|..|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 9999999999999999999988776 56899999999999999999999999999999999999994 6789999999
Q ss_pred CeEEEec
Q 002496 293 GTIMVKI 299 (915)
Q Consensus 293 g~v~i~~ 299 (915)
|+|.+|.
T Consensus 420 GkikvWd 426 (499)
T KOG0281|consen 420 GKIKVWD 426 (499)
T ss_pred ceEEEEe
Confidence 9999984
No 78
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=241.01 Aligned_cols=253 Identities=20% Similarity=0.394 Sum_probs=216.1
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~ 82 (915)
.+++++++.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+.. +...+.+++|.|||..+++|+.|++|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3678899999999999999999999999999999999999999998877763 467899999999999999999999999
Q ss_pred EEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEE
Q 002496 83 VYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
.||++. ......++- ...|.+++.++||+++++.+.|..|++++.++. ..... .....+|++++.+. ++.++++.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~l-ise~~~its~~iS~-d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRGL-ISEEQPITSFSISK-DGKLALVN 413 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhcc-ccccCceeEEEEcC-CCcEEEEE
Confidence 999874 444444432 356999999999999999999999999998875 22222 23446799999998 89999999
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-CcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC
Q 002496 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 162 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~ 240 (915)
-.+..+++||+...+.+..+.+|..+-..+.-+-.| +..++++|+.|+.|+||+..+|+++..+.+|...|.+++|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 999999999999888888888888765555433333 3359999999999999999999999999999999999999996
Q ss_pred CC-EEEEEEcCCcEEEEeCCC
Q 002496 241 LP-IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 241 ~~-~l~~~~~dg~v~iwd~~~ 260 (915)
.+ .+|++|.||+||||-...
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 65 789999999999998653
No 79
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-26 Score=241.51 Aligned_cols=388 Identities=15% Similarity=0.234 Sum_probs=297.3
Q ss_pred EEEEEEcCCC--CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002496 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 18 V~~v~~sp~~--~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 95 (915)
|+++ +||.- +.++.|+..|.+.|||+++++.+.+++.+...|+++.=+|-=..+++|..+|+|.++|++.++.+..|
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6665 46643 46889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002496 96 EAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~ 174 (915)
+...+.|+.++|..||+. +++|+..|.+.+||++..+........|.+.|....|.| +...+++++.|..+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 865699999999999975 556667799999999988565666668989999999999 888999999999998886554
Q ss_pred CC----CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC----------------------------------
Q 002496 175 PD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY---------------------------------- 216 (915)
Q Consensus 175 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~---------------------------------- 216 (915)
+. ..+.-.+|..+..|+.|..... ..+.+++.|++++.+++
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 32 3344467888888888874322 25666666766555543
Q ss_pred -------------------------------CCCcE-EEEec-----CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 217 -------------------------------QTKSC-VQTLE-----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 217 -------------------------------~~~~~-~~~~~-----~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
++... ...+. .....+++++.++.|++.+.|...|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 22111 01111 123568999999999999999999999999999
Q ss_pred Ccceeeee---ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceec
Q 002496 260 TYRLENTL---NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (915)
Q Consensus 260 ~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 336 (915)
+|.....+ ..|.++|++++....++.+++++.+|.+.+|.-.... +.. . +
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------l~~------~-----------l 531 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------LKK------S-----------L 531 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----------eee------e-----------e
Confidence 99988888 4788999999999999999999999999997433221 100 0 0
Q ss_pred cCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-C
Q 002496 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-S 409 (915)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~g~~l~~~~-~ 409 (915)
. ....+..+..+.....+|++ .+-.+.+|+....+ ..+...++++.|||||+++++.+ |
T Consensus 532 ~--------------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 532 R--------------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred c--------------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 0 01123344455544455544 47788888877543 22457899999999999999999 8
Q ss_pred CeEEEeccCccceee--------eecCcccceeecCcEEEEeeCC--eEEEEec
Q 002496 410 SKIKIFSKNFQEKRS--------VRPTFSAERIYGGTLLAMCSND--FICFYDW 453 (915)
Q Consensus 410 ~~i~v~~~~~~~~~~--------~~~~~s~~~i~~g~~La~~~~~--~v~~~d~ 453 (915)
++|++||+-...... ....|+|. |.+||+...+ .|++|.-
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPN----GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCC----CCEEEEEEecCceEEEEEc
Confidence 999999965432211 11278998 9999999888 7777753
No 80
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2e-24 Score=217.15 Aligned_cols=413 Identities=17% Similarity=0.332 Sum_probs=299.1
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCce
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--------FIRVYNYNTMDK 91 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--------~i~vwd~~~~~~ 91 (915)
.+-+-|.|..+.-. -+.+.+|+.+.. ..+.+.+|...|.|+..+|+.-.+++|..-| .+++||..+...
T Consensus 70 Nly~lptgE~vyfv--A~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV--AAVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEEe--ccEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 35566777755443 245667776543 3355778999999999999999898875544 599999888888
Q ss_pred eEEEecCCCCEEEEEEcCC--CCEEEEE--EcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 92 VKVFEAHTDYIRCVAVHPT--LPYVLSS--SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+..+......|.|++|++. |.+++.. +.+..+.+||+..+. ........+..|....|+|.+.+++++++ .|.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~-~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKA-KLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhh-ccCcceeccceEEEEEeccCCCcEEEEeC-CceE
Confidence 8888777778999999983 4455444 345678999998763 33333445566889999998888888776 5899
Q ss_pred EEEECCCCCCceEE---e-cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002496 168 KIWNLGSPDPNFTL---D-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 168 ~v~d~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
.+|+.+++....+. . ..+..|.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++.-.+|.+
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 99999887654432 2 2236799999999998 999999999999999888877777799999999999999965
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeee--cCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCc
Q 002496 244 IITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
| +|+.|..|..|| .+.+.++... ...+.+..++-...+ |.+|+....|..- .
T Consensus 302 l-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~G------------------t---- 355 (626)
T KOG2106|consen 302 L-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQG------------------T---- 355 (626)
T ss_pred e-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEe------------------e----
Confidence 4 599999999999 6566554443 344667776644333 7777766655431 0
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee--cccccCccceeEEEEe
Q 002496 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL--AWRNRSFGSALEFVWS 398 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~--~~~~~~~~~~~~~~~s 398 (915)
+.++-.+.. ..+....-.++.+|+...+++|+ ++.+.+|+-. .|....-.++.++.|.
T Consensus 356 --------------~~~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 356 --------------LENGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred --------------ecCCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 111111100 01111345788889888888887 9999999722 2444555678899999
Q ss_pred cCCcEEEEec-CCeEEEeccCccceeeeec--------CcccceeecCcEEEEeeCC-eEEEEeccC-CcEEEEEE----
Q 002496 399 SDGEYAVRES-SSKIKIFSKNFQEKRSVRP--------TFSAERIYGGTLLAMCSND-FICFYDWAE-CRLIRRID---- 463 (915)
Q Consensus 399 ~~g~~l~~~~-~~~i~v~~~~~~~~~~~~~--------~~s~~~i~~g~~La~~~~~-~v~~~d~~~-~~~i~~~~---- 463 (915)
|.| .++.++ .|...|.|.+......+.. .|+|+ |.+||+++.| .|++|.++. |....+..
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 999 666665 7888888765543322221 78898 9999999999 999999864 44444333
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002496 464 VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|+.+.||+|+.++.+.+.+--+.+|
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEE
Confidence 389999999999999999988766666
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.5e-27 Score=262.80 Aligned_cols=282 Identities=19% Similarity=0.307 Sum_probs=239.8
Q ss_pred cCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCC------------CceeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002496 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQS------------QTMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 78 (915)
.+..+|.+++.||+|..+|+|+ .||.+.||+.+. .+.+.....|.+.|+|+.|+|||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455799999999999999999 799999998643 23445566799999999999999999999999
Q ss_pred CeEEEEECCC------------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec
Q 002496 79 MFIRVYNYNT------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 79 g~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+.|.||.... .+.+..+.+|...|..++|+|++.++++++.|++|.+||..+. .....+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeec
Confidence 9999998772 1356778899999999999999999999999999999999998 88999999
Q ss_pred CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC------CCCeeEEEEEeCCCcCEEEEEe----CCCe
Q 002496 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGS----DDHT 210 (915)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~----~dg~ 210 (915)
|.+.|..+.|.| -+++|++-+.|++|++|++.+....+.+..+ ...+..+.|+|+|+ +|++.. .-.+
T Consensus 170 H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 170 HQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKST 246 (942)
T ss_pred ccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcce
Confidence 999999999999 9999999999999999997765555544332 33467899999998 787753 2457
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCC-----CC------------EEEEEEcCCcEEEEeCCCcceeeee-ecCCc
Q 002496 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LP------------IIITGSEDGTVRIWHATTYRLENTL-NYGLE 272 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-----~~------------~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~ 272 (915)
+.|.+-.+.+.-..+-+|..++.++.|+|. .+ .+++|+.|++|.||.....+++... +....
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 889988888888889999999999999982 11 6889999999999998777765443 33457
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 273 RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
.|..++|+|||..|.+++.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999884
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.6e-27 Score=217.68 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=228.4
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE--EecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEE
Q 002496 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--FEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 51 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd 127 (915)
+.+.+|..+|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44567889999999999999999999999999999987755544 4589999999999985 45789999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++++ ++......... =.-+.|+| +++++++++.|..|.+.|.++.+.....+ ....++-++|+.+++ +++....
T Consensus 94 ~r~~-k~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd--~Fflt~G 167 (313)
T KOG1407|consen 94 IRSG-KCTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND--LFFLTNG 167 (313)
T ss_pred eccC-cEEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC--EEEEecC
Confidence 9998 44444433323 34678999 89999999999999999998877655543 456678889986555 6777777
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
.|+|.|..+..-+++.+++.|.....||.|+|+|+++++|+.|..+.+||+...-+++.+....-+|..++|+.+|++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 89999999999999999999999999999999999999999999999999998888999998889999999999999999
Q ss_pred EEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002496 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (915)
Q Consensus 288 ~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (915)
+|++|-.|-|- . +++|.++-- -.++.+-..++|+|...+
T Consensus 248 SaSEDh~IDIA---------~---------------------------vetGd~~~e-----I~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 248 SASEDHFIDIA---------E---------------------------VETGDRVWE-----IPCEGPTFTVAWHPKRPL 286 (313)
T ss_pred ccCccceEEeE---------e---------------------------cccCCeEEE-----eeccCCceeEEecCCCce
Confidence 99999988772 2 333333321 123445568999999999
Q ss_pred EEEEcC
Q 002496 368 VVVCGD 373 (915)
Q Consensus 368 lav~~~ 373 (915)
||.+.+
T Consensus 287 LAyA~d 292 (313)
T KOG1407|consen 287 LAYACD 292 (313)
T ss_pred eeEEec
Confidence 987763
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.6e-27 Score=231.90 Aligned_cols=279 Identities=19% Similarity=0.281 Sum_probs=248.0
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|+++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46899999998888999999999999999999999999999999999999999999999999999999999887777888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002496 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~ 174 (915)
..|..+|+.+..+|+|.||++++.||+..+.|++++........ ...-.+++.+|+| |+.+|.+|..||.|++||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 89999999999999999999999999999999999855544433 2335589999999 999999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcE
Q 002496 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v 253 (915)
+.....|.+|.++|..++|+.+|- |++++++|+.|++||++..+...++... ...+.+++|.+.|.+|+.++.+=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999999999999999998876 8999999999999999987776666533 2369999999999999999887666
Q ss_pred EEEeCC--CcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 254 RIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 254 ~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
++++-. +++.+..+..+.+..+.+.|....+++++++.|..+++
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 666633 56677888888888999999999999999999988776
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=232.47 Aligned_cols=279 Identities=25% Similarity=0.348 Sum_probs=231.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
..+.+.|..|||||++|++|+.||.|.|||+.+|+..+.+ .-+.++|.|+.||.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4567899999999999999999999999999999875544 35778999999999999999999999999999
Q ss_pred CCCCeeEEEEee-cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 128 WEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
+.++ .+.+.+. .|...|+|+.|+. |+..+++++.|.++++.-+.+|+....+.+|...|+...|.++|. .+++++
T Consensus 292 i~tG-~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~--~iisaS 367 (508)
T KOG0275|consen 292 IETG-QCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH--HIISAS 367 (508)
T ss_pred Eecc-hHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC--eEEEec
Confidence 9999 6665555 8999999999998 899999999999999999999999999999999999999999998 799999
Q ss_pred CCCeEEEEECCCCcEEEEecCC--ccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecC---CccEEEEEEe
Q 002496 207 DDHTAKVWDYQTKSCVQTLEGH--THNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYM 280 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~--~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~ 280 (915)
.||+|++|+..+.+|+.+++.. ..+|.++-.-|.. ..++++...++|.|.++. |+.++++..+ .+...+.+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999999999988753 4568888887755 477888888899999965 7888777654 3567788999
Q ss_pred cCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002496 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|.|.++.+.+.|+.++.+. +..|..-. .+.-++..+-.++
T Consensus 447 pkGewiYcigED~vlYCF~------------------------------------~~sG~LE~----tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFS------------------------------------VLSGKLER----TLPVHEKDVIGLT 486 (508)
T ss_pred CCCcEEEEEccCcEEEEEE------------------------------------eecCceee----eeecccccccccc
Confidence 9999999999999988741 11111100 0123344556788
Q ss_pred ECCCCCEEEEEc-CCcEEEE
Q 002496 361 HNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~ 379 (915)
++|..+.+|+.+ ||.+.+|
T Consensus 487 HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cCcccchhhhhcccchhhhc
Confidence 888888888777 6666666
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-27 Score=222.78 Aligned_cols=247 Identities=17% Similarity=0.367 Sum_probs=210.3
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002496 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (915)
Q Consensus 5 ~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~~~dg~i~ 82 (915)
+.....+..|.++|++++.+ ++++|+|+.|-+|+|||+++...+..+..|.+.|+++.|.+... +|++|+.||.|.
T Consensus 33 l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 34456778999999999997 89999999999999999999999999999999999999999875 899999999999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
+|+......+..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-.++.-...-..+. -..+.|+| .+.+|+.++
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~-~Gd~F~v~~ 187 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSP-QGDHFVVSG 187 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcC-CCCEEEEEe
Confidence 999999999999999999999999999999999999999999999988743333222333 34599999 788888877
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE--eCC
Q 002496 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF--HPE 240 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~--~~~ 240 (915)
.+ .|-+|.+.+-.....+. .+..+.|+.|...+ ++++|++++.|.+||..++.+...+.+|...|..+.+ .|+
T Consensus 188 ~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~---~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 188 RN-KIDIYQLDNASVFREIE-NPKRILCATFLDGS---ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred cc-EEEEEecccHhHhhhhh-ccccceeeeecCCc---eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCC
Confidence 64 58899987765544443 33556677665333 7999999999999999999999999999999999884 467
Q ss_pred CCEEEEEEcCCcEEEEeCCCc
Q 002496 241 LPIIITGSEDGTVRIWHATTY 261 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~ 261 (915)
+.+|+++|+||.|++||+...
T Consensus 263 ~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEEeccCceEEEEEcccc
Confidence 789999999999999998765
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.3e-26 Score=251.25 Aligned_cols=265 Identities=18% Similarity=0.252 Sum_probs=208.3
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee-------------EEEEecCCCEEEEEEeC-CCCEEEEEeCCC
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-------------KSFEVTELPVRSAKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg 79 (915)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3455666777778666676666666667765433221 24678999999999999 889999999999
Q ss_pred eEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEe
Q 002496 80 FIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 80 ~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (915)
+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++ .....+.+|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEE
Confidence 9999999765 3466788999999999999985 68999999999999999988 6667788899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEe----CCCeEEEEECCCCc-EEEEe
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGS----DDHTAKVWDYQTKS-CVQTL 225 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~ 225 (915)
| ++++|++++.|++|++||+++++.+..+..|... +..+.|.+++. .+++++ .|+.|++||+++.. ++...
T Consensus 178 p-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 L-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred C-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 9 8999999999999999999999988888888765 34677887765 455543 47999999998754 44433
Q ss_pred cCC-ccCeEEEEEeCCCCEEEEEE-cCCcEEEEeCCCcceeeeeecC-CccEEEEEEecC
Q 002496 226 EGH-THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKS 282 (915)
Q Consensus 226 ~~~-~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~ 282 (915)
..+ ...+....|++++++|++++ .||.|++||+.+++........ ..++..++|.|.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 333 33456677899999999887 4999999999988876655442 345666777664
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=3.4e-27 Score=246.30 Aligned_cols=282 Identities=21% Similarity=0.376 Sum_probs=247.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeE--EEEecCCCEEE-EEEeC-CCCEEEEEeCCC
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK--SFEVTELPVRS-AKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-l~~s~-~~~~l~~~~~dg 79 (915)
..++.+.+.+|..-|+.++..+.. ++++++.||++++|+-..++.+. .+.+|.+-|.+ +++.+ ++-.+++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 456778899999999999987655 79999999999999965554443 46667777766 77775 555699999999
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+|.+|...+..++.++++|...|.|+....++. +++||.|.++++|.... +...+.+|+..|+++..-| + +.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~-e-~~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLP-E-NTYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecC-C-CcEE
Confidence 999999999999999999999999999888876 99999999999998653 4556899999999999998 3 3999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002496 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
+|+.|.+|++|.- ++...++.+|...|..+++.+++. +++++.||.|++|++ +|.++..+.+|..-|.+++..+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999974 778899999999999999998875 999999999999998 6999999999999999999888
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
++..++++++|++++||+.. .+.+.+..+...+|++.+-++|. |++|+.||.|++|...
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 88899999999999999965 88888888888999999998886 7789999999997543
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-28 Score=249.49 Aligned_cols=276 Identities=17% Similarity=0.296 Sum_probs=237.1
Q ss_pred EEEEcC-CCCeEEEEEcCCcEEEEECCCCc------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--c
Q 002496 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--D 90 (915)
Q Consensus 20 ~v~~sp-~~~~la~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~--~ 90 (915)
++..++ .+++|.+|+.||.|++|+..... .+..++.|...|+.+....+|+.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 455554 55679999999999999976532 35678889999999999999999999999999999999877 5
Q ss_pred eeEEEecCCCCEEEEEE-cCCCCEEEEEEcCCeEEEEECCCCee---------EEEEee-cCCccEEEEEEecCCCCEEE
Q 002496 91 KVKVFEAHTDYIRCVAV-HPTLPYVLSSSDDMLIKLWDWEKGWM---------CTQIFE-GHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~-s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~i~~~~~~p~~~~~l~ 159 (915)
+..++..|.++|.|++. -++...+++|+-|+.|.+||++++.. ....+. ++..+|.+++.++ .+..|+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEE
Confidence 67788899999999999 78888999999999999999996621 122233 7888999999999 788999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002496 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
+|+..+.+++||.++.+.+..+.+|...|.++..+++|. .++++++||+|++||+...+|+.++..|...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+-..+.+|+.||.|..=|+++......+-....+|..+..+...+-+-+++.|+.|.-|
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999865444444444667777777555556777888888776
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=8.5e-28 Score=220.00 Aligned_cols=286 Identities=19% Similarity=0.317 Sum_probs=238.3
Q ss_pred eEEEEecCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002496 50 AKSFEVTELPVRSAKFVA---RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
..+..+|..||..++||| +|-+|++++.||.-.+-+-+||..+.+|.+|.+.|++...+.+-.+-++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345678999999999986 88899999999999999999999999999999999999999988888999999999999
Q ss_pred ECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002496 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
|.-++ .....+ .|.+-|..++|+. |.+.|++|+.+..+++||++..+ +...+.+|.+.|..+-|+...+ .|++.
T Consensus 87 ~a~tg-delhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~--~iLSS 161 (334)
T KOG0278|consen 87 DAVTG-DELHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK--CILSS 161 (334)
T ss_pred hhhhh-hhhhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc--eEEee
Confidence 99888 334444 3788899999998 89999999999999999998765 5567889999999999998776 68888
Q ss_pred eCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCE
Q 002496 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285 (915)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 285 (915)
++|++|++||.+++..++++. ...+|+++.++++|.+|.++ ..+.|++||..+..++..+..+ ..|.+.+.+|+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEF 238 (334)
T ss_pred ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCce
Confidence 999999999999999999998 66789999999999866554 5678999999999999988877 67899999999999
Q ss_pred EEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC
Q 002496 286 IVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG 365 (915)
Q Consensus 286 l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g 365 (915)
+++|+.|+.++.+ +..+|+.+... ...+..++.++.|+|+|
T Consensus 239 fVaGged~~~~kf------------------------------------Dy~TgeEi~~~---nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 239 FVAGGEDFKVYKF------------------------------------DYNTGEEIGSY---NKGHFGPVHCVRFSPDG 279 (334)
T ss_pred EEecCcceEEEEE------------------------------------eccCCceeeec---ccCCCCceEEEEECCCC
Confidence 9999999887752 13333333220 13445566677777777
Q ss_pred CEEEEEc-CCcEEEEEee
Q 002496 366 RFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 366 ~~lav~~-~~~~~i~~~~ 382 (915)
...|+++ ||.+++|...
T Consensus 280 E~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ceeeccCCCceEEEEEec
Confidence 7777776 6777777543
No 90
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.3e-24 Score=223.81 Aligned_cols=416 Identities=15% Similarity=0.162 Sum_probs=289.6
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-eEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe
Q 002496 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 55 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
-.+.+|++++|+.+.+.||++-.+|.|-+|++..+=. ...+.++ ...|.+++|++ +.+|++.+.+|.|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l- 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL- 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC-
Confidence 3567899999999999999999999999999986533 3344444 45799999995 557999999999999999998
Q ss_pred eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
+.........+.|++++.+| .+..+++|+.||.+..++...++..+ .+...++.+.+++|.|++. .+++|+.||.
T Consensus 101 k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGV 177 (691)
T ss_pred ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCce
Confidence 56666677788999999999 88999999999988888876665443 2334568899999999987 5999999999
Q ss_pred EEEEECCCCcEEEEecC--------CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002496 211 AKVWDYQTKSCVQTLEG--------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~--------~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
|++||...+..+..... ...-|+++.|-.++ .|++|..-|+|.+||...+.+++.+..+...|.+++..++
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 99999998887662211 22347888888765 7999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCeEEEecCCCc---------------ceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeee
Q 002496 283 SRRIVIGYDEGTIMVKIGREE---------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i~~~~~~---------------~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (915)
+.++++++.|+.+.-+..... .+.++..-+..+++...+..++-.....+ ...+..
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~--~~~~h~------- 327 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREF--KNMDHR------- 327 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccccc--Cchhhh-------
Confidence 999999999998876422111 11111111112222222221111100000 000000
Q ss_pred ecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc--------------ccCccceeEEEEecCCcEEEEecCCeEE
Q 002496 348 ELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--------------NRSFGSALEFVWSSDGEYAVRESSSKIK 413 (915)
Q Consensus 348 ~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~--------------~~~~~~~~~~~~s~~g~~l~~~~~~~i~ 413 (915)
.......-..+...|..++++......+.+|...+.- .+....+.+.+.||+|++++...-..++
T Consensus 328 -~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~ 406 (691)
T KOG2048|consen 328 -QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTK 406 (691)
T ss_pred -ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceE
Confidence 0011111124455666666777767777777665431 2234567899999999999998877788
Q ss_pred EeccCccceeeee-c-------------CcccceeecCcEEEEeeCC--eEEEEeccCCcE--EEEEE-----ccccEEE
Q 002496 414 IFSKNFQEKRSVR-P-------------TFSAERIYGGTLLAMCSND--FICFYDWAECRL--IRRID-----VTVKNLY 470 (915)
Q Consensus 414 v~~~~~~~~~~~~-~-------------~~s~~~i~~g~~La~~~~~--~v~~~d~~~~~~--i~~~~-----~~i~~v~ 470 (915)
||.++........ . .|+.+ +..+..++.+ .+..+++++... +..+. ..|..+.
T Consensus 407 iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid----~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 407 IYRLQPDPNVKVINVDDVPLALLDASAISFTID----KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred EEEeccCcceeEEEeccchhhhccceeeEEEec----CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 8876543321111 0 23333 6666666644 777777765532 22211 3788999
Q ss_pred EcCCCCEEEEEeCCeEE-EEE
Q 002496 471 WADSGDLVAIASDTSFY-ILK 490 (915)
Q Consensus 471 ~s~dg~~la~~~~~~~~-~~~ 490 (915)
.|++|.++|+.+..+.+ +|.
T Consensus 483 ~SsdG~yiaa~~t~g~I~v~n 503 (691)
T KOG2048|consen 483 VSSDGNYIAAISTRGQIFVYN 503 (691)
T ss_pred EcCCCCEEEEEeccceEEEEE
Confidence 99999999888765544 544
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.3e-28 Score=220.64 Aligned_cols=242 Identities=19% Similarity=0.327 Sum_probs=210.2
Q ss_pred CCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCce
Q 002496 15 SERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 15 ~~~V~~v~~sp~~-~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
.+.+..++|++.. +.+++++.||+++|||... ..++..++.|...|.++.|++. +..+++++.|++|++|+.+-.+.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 5678999999954 5777888899999999543 3577888899999999999984 55677889999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 92 VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
+.++.+|...|....|||. .+.++++|.||++++||++.. -....+..|...|.|+.|+..+.+.+++|+.|+.|+.|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999994 568899999999999999876 33444888999999999999889999999999999999
Q ss_pred ECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEEE
Q 002496 171 NLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIITG 247 (915)
Q Consensus 171 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~~ 247 (915)
|+++- .++..+.+|.-.|..+.|+|.... +|++++.|-+++|||...+ ..+.+...|..-+..+.|++ +..+++++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhh-HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 99874 477888999999999999998765 8999999999999998743 45666677888888999998 45589999
Q ss_pred EcCCcEEEEeC
Q 002496 248 SEDGTVRIWHA 258 (915)
Q Consensus 248 ~~dg~v~iwd~ 258 (915)
+.|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=221.87 Aligned_cols=286 Identities=17% Similarity=0.288 Sum_probs=236.2
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC------------------CceeEEEEecCCCEEEEEEeCCCCE
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------------------QTMAKSFEVTELPVRSAKFVARKQW 71 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~------------------~~~~~~~~~~~~~v~~l~~s~~~~~ 71 (915)
.+..|.+++++-+|||||.++|+|+.|..|+|.|++. ...++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4668999999999999999999999999999999862 1356777789999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE---eecCCccEE
Q 002496 72 VVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI---FEGHSHYVM 146 (915)
Q Consensus 72 l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~i~ 146 (915)
|++|+.|++|++||+......+.++ ....+|+++.|+|.|.+|++|.+-.++++||+++- ++... -..|.+.|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 9999999999999987533222222 23568999999999999999999999999999986 33332 246889999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEE
Q 002496 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 224 (915)
++.+++ .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++ |+++.+.|..+++|.+.+++++..
T Consensus 266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEeecCCcceeeeeeecCCceEEE
Confidence 999999 89999999999999999998888887774 343 5688888988887 999999999999999999999998
Q ss_pred ecCCcc-----CeEEEEEeCCCCEEEEEEc-CCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 225 LEGHTH-----NVSAVCFHPELPIIITGSE-DGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 225 ~~~~~~-----~i~~i~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
..+... .-+...|+....+++.-.+ .+.+.-||.++......+. +|.+.+..+.-||.+.-+.++++|-..++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 875411 1234556666666665443 4678999999887554443 57789999999999999999999999999
Q ss_pred ec
Q 002496 298 KI 299 (915)
Q Consensus 298 ~~ 299 (915)
|-
T Consensus 423 Wy 424 (430)
T KOG0640|consen 423 WY 424 (430)
T ss_pred ee
Confidence 84
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.7e-25 Score=230.64 Aligned_cols=539 Identities=15% Similarity=0.221 Sum_probs=338.9
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceeEE
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~ 94 (915)
.-..++.+|-..++|.- ....|.+||.+..+.-..+..+..+++|++|+++|+++++|- ....++||++..-..+..
T Consensus 39 ~~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE 117 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE 117 (1080)
T ss_pred cCCcccccccccceeec-cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh
Confidence 34456667765544432 246899999998888777888899999999999999999985 567899999999888899
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEc--CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 95 FEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
|..|.-.++|++|+|.++|+++.+. |..|.+||++.+ ....-..-...|..++|+. ++.++++.+ +..|++|.+
T Consensus 118 fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N--~~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wyl 193 (1080)
T KOG1408|consen 118 FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVN--SSGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWYL 193 (1080)
T ss_pred hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhc--ccccccccceeEEEEEEcc-CCceeeeee-eeeEEEEEe
Confidence 9999999999999999999997664 788999999865 2222233456789999998 899999876 678999998
Q ss_pred CCCCCc-----------------------------------eEEe--c-----------------CCCCeeEEEEEeCCC
Q 002496 173 GSPDPN-----------------------------------FTLD--A-----------------HQKGVNCVDYFTGGD 198 (915)
Q Consensus 173 ~~~~~~-----------------------------------~~~~--~-----------------~~~~v~~~~~~~~~~ 198 (915)
..++.. +.+. + ....-+|++.+ .
T Consensus 194 ~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~- 270 (1080)
T KOG1408|consen 194 QIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S- 270 (1080)
T ss_pred eccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c-
Confidence 654310 0000 0 00112334432 2
Q ss_pred cCEEEEEeCCCeEEEEECCCCcEEEEecC------------------------CccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEG------------------------HTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
.+|++|+.+|.|++|+..+-....++.. ..-...++.|++....|.+.-.|..++
T Consensus 271 -r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlY 349 (1080)
T KOG1408|consen 271 -RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLY 349 (1080)
T ss_pred -ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEE
Confidence 3899999999999999766433322210 001234677998888999999999999
Q ss_pred EEeCCCcce---eeeeecCCccEEEEEEecC-----------CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeC
Q 002496 255 IWHATTYRL---ENTLNYGLERVWAIGYMKS-----------SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHN 320 (915)
Q Consensus 255 iwd~~~~~~---~~~~~~~~~~v~~i~~~~~-----------~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~ 320 (915)
+||++.-+. ...+-+|...||++..-|- ...+++++.||+|++|..... .++.++. .
T Consensus 350 vWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c------tnn~vyr---R 420 (1080)
T KOG1408|consen 350 VWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC------TNNQVYR---R 420 (1080)
T ss_pred EEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc------cccceee---c
Confidence 999987553 3445567778888765551 134889999999999953321 0111110 0
Q ss_pred ceEEEEeeecccceeccCCceee-------eeeee---cCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc--
Q 002496 321 EIQTVNIKSVGADYEVTDGERLP-------LAVKE---LGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-- 387 (915)
Q Consensus 321 ~i~~~~~~~~~~~~~~~~g~~~~-------~~~~~---~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-- 387 (915)
.+...++.... ..|++.-. +.-+. .-.....++++++||+|++||.|. .|++.+|++...+..
T Consensus 421 Nils~~l~ki~----y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~ 496 (1080)
T KOG1408|consen 421 NILSANLSKIP----YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF 496 (1080)
T ss_pred ccchhhhhcCc----cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhh
Confidence 00000000000 11111100 00000 112334678999999999999998 899999998876543
Q ss_pred ---CccceeEEEEec-C--CcEEEEec-CCeEEEeccCc--cceee-------eec-CcccceeecCcEEEEeeCCeEEE
Q 002496 388 ---SFGSALEFVWSS-D--GEYAVRES-SSKIKIFSKNF--QEKRS-------VRP-TFSAERIYGGTLLAMCSNDFICF 450 (915)
Q Consensus 388 ---~~~~~~~~~~s~-~--g~~l~~~~-~~~i~v~~~~~--~~~~~-------~~~-~~s~~~i~~g~~La~~~~~~v~~ 450 (915)
+-..|.++.||. + .++|++++ |.-|.|||..- ....+ +.. .|...+ +...+++++.|...+
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--ln~~MiscGADksim 574 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--LNRKMISCGADKSIM 574 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--CceEEEeccCchhhh
Confidence 335788998883 2 36788888 78899998431 11111 111 222220 135677777775555
Q ss_pred EeccC----CcEEEEEE-----ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEee
Q 002496 451 YDWAE----CRLIRRID-----VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHET 521 (915)
Q Consensus 451 ~d~~~----~~~i~~~~-----~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 521 (915)
|+... |.+..+.. ..+..|...|+.+++++++.|.-+++.- +++ ....+.|.--..-
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~--------i~s------gKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD--------IES------GKQVKSFKGSRDH 640 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe--------ccc------cceeeeecccccC
Confidence 55432 43332222 3678899999999999999887776541 111 1122333332222
Q ss_pred eeeEEeeEEecC--EEEEEccCCeEEEEE--CCEE-eEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHH
Q 002496 522 NERVRTGLWVGD--CFIYNNSSWRLNYCV--GGEV-TTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLI 593 (915)
Q Consensus 522 ~~~i~~~~w~~~--~~i~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 593 (915)
+........+.. ++...-....|.++- .++. ..+..+...+-=+.|.++..+++-+.-+|-++.|.+++..+
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 223333344442 222222223344332 3332 23333333444456667788898888999999999876443
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=253.61 Aligned_cols=271 Identities=26% Similarity=0.430 Sum_probs=245.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
|...+.+..|+ ..+++++..+++|++||..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888998 55689999999999999999998888 9999999999999988899999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
..+.+|.+.|.++...+ .++++|+.|.+|++|++.++ .+...+.+|..+|.++..+ +..+++|+.|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999998864 46888999999999999988 7888888899999999985 789999999999999999
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002496 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
.+++++..+.+|...|.++.+.+. . .+++|+.|++|++||++++ +++.++.+|..-+..+.+ .+++|++++.||
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~-~--~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE-N--RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc-c--eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999977543 3 7999999999999999999 999999999988866555 457899999999
Q ss_pred cEEEEeCCCcceeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
.|++||..+++++.++.. +...|..+++. ...+++++.+|.+.+|.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999999999998 56788888876 46789999999999973
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.6e-26 Score=216.57 Aligned_cols=269 Identities=18% Similarity=0.292 Sum_probs=217.1
Q ss_pred cCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCC-Ccee-EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002496 13 QRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~ 89 (915)
...+.|.+++||| ...++++++-||+|++|+++. |..+ +....|.+||.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 555666788899999999987 3333 445568999999999999999999999999999999998
Q ss_pred ceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 90 DKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+..+..|.++|.++.|-+... .|++||.|.+|+.||.+.. .....+. -..++.++.. -..+++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~-LPeRvYa~Dv---~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ-LPERVYAADV---LYPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee-ccceeeehhc---cCceeEEEecCCcE
Confidence 5667778999999999988665 7999999999999999987 3333332 3345666654 34588999999999
Q ss_pred EEEECCCCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC--cEEEEecCCc---------cCeEE
Q 002496 168 KIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHT---------HNVSA 234 (915)
Q Consensus 168 ~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~i~~ 234 (915)
.+|+++++...+.. ...+-.+.|++..++.++ .+.|+-+|.+.+..+..+ +.-.+|+-|. ..|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999776443321 234456889999999885 699999999999988775 3333444443 24788
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE
Q 002496 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 235 i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (915)
|+|+|....|++.|.||++.+||-.....+.+...+..+|++.+|+.+|.++|-+
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999999999988777888888888999999999999988754
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.7e-26 Score=216.10 Aligned_cols=268 Identities=22% Similarity=0.364 Sum_probs=222.8
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
..+.|++|.|+|.+..|++++-||++++|++....+...+. |..|+.+++|.+ ...+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-e
Confidence 46789999999999999999999999999999887766666 899999999987 45699999999999999998654 4
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002496 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~ 173 (915)
.+..|..+|+|+..++-...+++||.|++|++||.+.. .....+. ....|.++.. .++.|++|+.+..+.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcc
Confidence 55679999999999998889999999999999999864 3333333 3347888877 47899999999999999999
Q ss_pred CCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCCc---------cCeEEEEEe
Q 002496 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHT---------HNVSAVCFH 238 (915)
Q Consensus 174 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~i~~i~~~ 238 (915)
+.....+. ...+..+.|+++.|++.+ +++++-+|+|.+=.+... +....|+.|. .+|.+++|+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 87654432 234567899999997775 888999999988666544 2233444442 368999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002496 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (915)
|-...++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99899999999999999999999999988888788999999999999999875
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-27 Score=234.56 Aligned_cols=239 Identities=22% Similarity=0.322 Sum_probs=208.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+|.+++|+|...+=++....-.+.+|+..+....+.+....+.+.+++|..||.++++|...|.|+++|..+. ...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HHH
Confidence 3468999999997765333334457999999998888888878889999999999999999999999999996653 677
Q ss_pred EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|+.++..+.|+|.++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..+. ++++|+.||.|++||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEE
Confidence 7888999999999999999999999999999999999998876688999999999999998765 899999999999999
Q ss_pred CCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCC
Q 002496 216 YQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 216 ~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 293 (915)
++.. ..+.++. |..+|.++.+-|.|..|++++. ..|++||+.+|. .+.....|...|+|+++..++..|.+|+-||
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 9987 6666666 9999999999999999999884 589999999655 4555555889999999999999999999999
Q ss_pred eEEEe
Q 002496 294 TIMVK 298 (915)
Q Consensus 294 ~v~i~ 298 (915)
.+.++
T Consensus 261 ~VKVf 265 (487)
T KOG0310|consen 261 HVKVF 265 (487)
T ss_pred ceEEE
Confidence 99985
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-27 Score=254.89 Aligned_cols=285 Identities=17% Similarity=0.293 Sum_probs=216.5
Q ss_pred hhcc-cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEE-------------EEEeC-----CC
Q 002496 9 RKLA-QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-------------AKFVA-----RK 69 (915)
Q Consensus 9 ~~l~-~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-------------l~~s~-----~~ 69 (915)
..+. .|.+.|.+|.||+||+|||+|+.||.|+||.+...+... .+.+.-.+ +.-++ ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~---~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR---VAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc---ccccccchhhhhhhhccccCccccccccccccc
Confidence 3445 899999999999999999999999999999986632211 11111111 11111 01
Q ss_pred CEEEEEeCCCeEEEEECC----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccE
Q 002496 70 QWVVAGADDMFIRVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV 145 (915)
Q Consensus 70 ~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 145 (915)
...-.+.....+ +.+.. ..+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++... .++..|. |...|
T Consensus 337 s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfV 412 (712)
T KOG0283|consen 337 SSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFV 412 (712)
T ss_pred cccccccCCccc-cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-ceeeEEe-cCCee
Confidence 111122222221 22211 236678889999999999999765 8999999999999999976 7887776 99999
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe
Q 002496 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (915)
+|++|+|.|.++|++|+.||.|+||++...+... ......-|++++|.|+|+ +.++|+.+|.+++|+....+....+
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc--eEEEEEeccEEEEEEccCCeEEEee
Confidence 9999999999999999999999999997765443 334458899999999988 7999999999999999876655444
Q ss_pred cC--------CccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcceeeeeecCC--ccEEEEEEecCCCEEEEEecCCe
Q 002496 226 EG--------HTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 226 ~~--------~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~dg~ 294 (915)
.- ....|+++.|.|... .|++.+.|..|||||.++..++..+++.. ..-....|+.||++|+++++|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 21 122799999998554 57778889999999998888888877542 34567889999999999999999
Q ss_pred EEEecCCCc
Q 002496 295 IMVKIGREE 303 (915)
Q Consensus 295 v~i~~~~~~ 303 (915)
|++|.....
T Consensus 570 VYiW~~~~~ 578 (712)
T KOG0283|consen 570 VYIWKNDSF 578 (712)
T ss_pred EEEEeCCCC
Confidence 999965443
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.6e-27 Score=246.11 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=221.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|+...+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378899999999999999999999999999999999999998 99999999998 677999999999999999987765
Q ss_pred EE-EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE--CCCcEEE
Q 002496 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKI 169 (915)
Q Consensus 93 ~~-~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~--~dg~i~v 169 (915)
.. +.+|...|..+.|++++.++++|+.|+.+.|||.... .+...+..|...|..++|+|-..++||+|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 55 7889999999999999999999999999999999655 677788899999999999998889999975 4999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
||..++..+..+. ....|..+.|++..+......|..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999998887765 568899999999987633334566789999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCc
Q 002496 250 DGTVRIWHATTY 261 (915)
Q Consensus 250 dg~v~iwd~~~~ 261 (915)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998764
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.8e-27 Score=220.29 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=247.4
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
.+.+.+.|.||.+.|..++.....+.+.+++.|.+-+||.+++|.++..+.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002496 84 YNY------NT------------------------------M----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 84 wd~------~~------------------------------~----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
|.. .. + -++..+.+|.+.|.+..|-..|+.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 00 0 1345677899999999999999999999999999
Q ss_pred EEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEE
Q 002496 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.+||++++ .+...+.+|....+.++-+| ...++++++.|.+.++||++.. ..+..|++|...|+++.|..+.+ +
T Consensus 297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---v 371 (481)
T KOG0300|consen 297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---V 371 (481)
T ss_pred eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc---e
Confidence 99999999 88899999999999999999 8899999999999999999743 34567899999999999988765 9
Q ss_pred EEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceee----eeecCCccEEEE
Q 002496 203 ITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAI 277 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i 277 (915)
++|++|.+|++||+++.+ ++.++. ..+++..++.+..+++|+.--.+..|++||++..++.. .-++|..-|.|+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 999999999999999865 566666 56789999999999999999989999999988555322 344666779999
Q ss_pred EEecCC--CEEEEEecCCeEEEe
Q 002496 278 GYMKSS--RRIVIGYDEGTIMVK 298 (915)
Q Consensus 278 ~~~~~~--~~l~~~~~dg~v~i~ 298 (915)
+|..+. .-|++++-|..+.-|
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eccccCcccccccccccceeeee
Confidence 998653 234455555555444
No 101
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7e-25 Score=209.47 Aligned_cols=246 Identities=19% Similarity=0.262 Sum_probs=210.4
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc--CCeEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~i 125 (915)
+..+.+....+.|.++.|+++|..+++++.|..+++||..+++.++++..+.-.+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344556666789999999999999999999999999999999999999988888999999888777887776 889999
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002496 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.++.++ +..+.+.||...|.+++.+| .++.|++++.|++|++||++..++.-.+..... ..++|.|.|- +++++
T Consensus 85 Lsl~dN-kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL--ifA~~ 158 (311)
T KOG1446|consen 85 LSLHDN-KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL--IFALA 158 (311)
T ss_pred EEeecC-ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc--EEEEe
Confidence 999988 88999999999999999999 669999999999999999998887766654333 4678888886 77777
Q ss_pred eCCCeEEEEECCCC--cEEEEec---CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCcc---EEEE
Q 002496 206 SDDHTAKVWDYQTK--SCVQTLE---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAI 277 (915)
Q Consensus 206 ~~dg~i~iwd~~~~--~~~~~~~---~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i 277 (915)
.....|++||++.- .+..++. +.....+.+.|+|+|++|+.++..+.+++.|.-+|....++..+... --+.
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 77779999999863 3444444 33567899999999999999999999999999999988888766433 2578
Q ss_pred EEecCCCEEEEEecCCeEEEec
Q 002496 278 GYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 278 ~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
+|+||++++.+|++||++.+|.
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEE
Confidence 8999999999999999999984
No 102
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=6.3e-25 Score=241.53 Aligned_cols=245 Identities=16% Similarity=0.255 Sum_probs=192.5
Q ss_pred EEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEEecCCCCEE
Q 002496 33 SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD--------KVKVFEAHTDYIR 103 (915)
Q Consensus 33 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~ 103 (915)
|+..|.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||.|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 345778999998887788889999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEEcCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe
Q 002496 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (915)
Q Consensus 104 ~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 182 (915)
+++|+|++..+ ++++.|++|++||++++. ....+. |...|.+++|+| ++++|++++.|++|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999998765 688999999999999884 333443 567899999999 89999999999999999999999888899
Q ss_pred cCCCCeeEEEE-----EeCCCcCEEEEEeCCC----eEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcC
Q 002496 183 AHQKGVNCVDY-----FTGGDKPYLITGSDDH----TAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 183 ~~~~~v~~~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
+|.+.+.+..+ ++++. ++++++.++ .|+|||+++ ++++..+.. +.+.+......++|.++++|+.|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99877654443 24444 788877664 799999995 556655432 33333344445568899999999
Q ss_pred CcEEEEeCCCcceeeeeec--CCccEEEEEEecCC
Q 002496 251 GTVRIWHATTYRLENTLNY--GLERVWAIGYMKSS 283 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~ 283 (915)
+.|++|++..+.. ..+.. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999999987642 22221 34667888898864
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-27 Score=241.69 Aligned_cols=229 Identities=23% Similarity=0.439 Sum_probs=204.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-eEEEEee
Q 002496 67 ARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFE 139 (915)
Q Consensus 67 ~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 139 (915)
|++++|++|+.||.|++|+..... .+..++.|.+.|..+....+++.|+++|.|-+|++|+...+. .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999976432 256678899999999999999999999999999999988653 5677888
Q ss_pred cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC--c--------eEEe-cCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002496 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--N--------FTLD-AHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.|..+|.|+++..++..++++|+.|+.|.+||++++.. + ..+. ++..+|.+++.++.+. .+++|+..
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EEEecCcc
Confidence 99999999999444889999999999999999987632 1 1222 6778899999988886 79999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEE
Q 002496 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
+.+++||.++++.+..+++|..+|..+..++||..++++|+||+|++||+...+++.++..|...||++..+|+-..+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEE
Q 002496 289 GYDEGTIMV 297 (915)
Q Consensus 289 ~~~dg~v~i 297 (915)
|+.||.|+.
T Consensus 273 G~rd~~i~~ 281 (735)
T KOG0308|consen 273 GGRDGNIYR 281 (735)
T ss_pred cCCCCcEEe
Confidence 999999987
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=195.91 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=228.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC------Cc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QT---------MAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d 78 (915)
.+..|.+++|+|.|.+.|+|+...+.+|--+.. +. ..+.-+.|.+.|.|.+|+|+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 456799999999999999999999888875432 11 112334588999999999999999999999
Q ss_pred CeEEEEECCCCce-----eEEEecCCCCEEEEEEcCC----CCEEEEEE-cCCeEEEEECCCCeeEEEEeecCCccEEEE
Q 002496 79 MFIRVYNYNTMDK-----VKVFEAHTDYIRCVAVHPT----LPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 79 g~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (915)
.+|++.-++...+ -..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...+ +..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence 9999976653222 2456779999999999643 34555544 3566777787777 6778889999988876
Q ss_pred -EEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--C-----CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc
Q 002496 149 -TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--H-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (915)
Q Consensus 149 -~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 220 (915)
.| ++-.|++|+.|.+|++||++-...+.++.. | ...|.+++..|.|. +|++|..|....+||++.++
T Consensus 190 ysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 190 YSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence 35 578999999999999999988777666532 1 24688899988887 89999999999999999999
Q ss_pred EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002496 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 221 ~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
.++.+..|...|.++.|+|...++++++.|..|++-|+... -.+..+..|...+..+.|+|+.-.+++.+.|.++.
T Consensus 265 ~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 99999999999999999999999999999999999997632 13345567788899999999999999999999999
Q ss_pred Eec
Q 002496 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
+|.
T Consensus 345 lwa 347 (350)
T KOG0641|consen 345 LWA 347 (350)
T ss_pred Eec
Confidence 984
No 105
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.4e-25 Score=243.27 Aligned_cols=227 Identities=14% Similarity=0.225 Sum_probs=185.0
Q ss_pred hcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002496 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~ 80 (915)
.+.+|++.|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8889999999999999999765 3466788999999999999986 68999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCcc-EEEEEEecCCCCEEE
Q 002496 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~ 159 (915)
|+|||+.+++.+..+..|.+.|.+++|+|++.+|++++.||.|++||++++ .....+.+|.+. +..+.|.+ +++.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~-~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAK-RKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcC-CCCeEE
Confidence 999999999999999999999999999999999999999999999999988 456667777654 45678888 555666
Q ss_pred EEE----CCCcEEEEECCCCCCc-eEEecC-CCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCCCcEEEEecC-CccC
Q 002496 160 SAS----LDRTIKIWNLGSPDPN-FTLDAH-QKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG-HTHN 231 (915)
Q Consensus 160 ~~~----~dg~i~v~d~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~ 231 (915)
+++ .|++|++||+++.... .....+ ...+....|++++. ++++++ .|+.|++||+.+++.+..... +..+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 544 4789999999876533 333322 23455566777776 677766 599999999999887665543 3446
Q ss_pred eEEEEEeCC
Q 002496 232 VSAVCFHPE 240 (915)
Q Consensus 232 i~~i~~~~~ 240 (915)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 778888885
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=8.8e-26 Score=247.60 Aligned_cols=248 Identities=27% Similarity=0.464 Sum_probs=224.5
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~ 86 (915)
+...+.||.+.|.++++..-+..|++|+.|.+++|||+.+|.+..++.+|...|.++... ...+++|+.|.+|++|++
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEec
Confidence 344589999999999999888899999999999999999999999999999999988764 456888899999999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.++..+..+.+|.++|+++..+ +.++++|+.||+|++||+.++ ++...+.+|...|.++.+.+ . +.+++|+.|++
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT 393 (537)
T ss_pred cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecC-c-ceEEeeeeccc
Confidence 9999999999999999999998 789999999999999999988 89999999999999998864 2 99999999999
Q ss_pred EEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-CccCeEEEEEeCCCCEE
Q 002496 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPII 244 (915)
Q Consensus 167 i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l 244 (915)
|++||+.+. +++.++..|..-+..+.+. ++ +|++++.|++|++||..++++++.+.+ |...|+.+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DN--FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcccccccccc--cc--eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceE
Confidence 999999999 8999999999888766653 33 799999999999999999999999998 67888888876 3578
Q ss_pred EEEEcCCcEEEEeCCCcceeeee
Q 002496 245 ITGSEDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~ 267 (915)
++++.||.+++||+.++.+...+
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999987765
No 107
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.2e-23 Score=219.69 Aligned_cols=454 Identities=17% Similarity=0.247 Sum_probs=292.9
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCc--eeEE
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTMD--KVKV 94 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~dg~i~vwd~~~~~--~~~~ 94 (915)
..+|.|.+ .+|.|. ...|.+||..+......+.+|..+|+|+.|-|+++ ++++|+.|+.|.+|.+.... ++..
T Consensus 19 v~sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 19 VSSWGPGG-LVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccccc-eEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 34555544 455554 67899999877777788999999999999999887 89999999999999987433 3444
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------------------------------------------
Q 002496 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------------------------- 131 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------------------------------------------- 131 (915)
+.+|...+ ++++.....+.+...|+.+.+||.+..
T Consensus 97 ~~g~~~~~--~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 97 IQGHCKEC--VCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred ecCcceeE--EEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 55555444 444433222223357788888876322
Q ss_pred ------eeEEEEeecCCccEEEEEEecCC--CCEEEEEECCCcEEEEECCCCC-----------------Cce----E--
Q 002496 132 ------WMCTQIFEGHSHYVMQVTFNPKD--TNTFASASLDRTIKIWNLGSPD-----------------PNF----T-- 180 (915)
Q Consensus 132 ------~~~~~~~~~~~~~i~~~~~~p~~--~~~l~~~~~dg~i~v~d~~~~~-----------------~~~----~-- 180 (915)
......+.+|...|.+++|.... .-+++++|.|..|++|.+.-+. +.+ .
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 12334567899999999997633 3578899999999999863221 111 1
Q ss_pred --------EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc--E-----EEEecCCccCeEEEEEeCCCCEEE
Q 002496 181 --------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--C-----VQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 181 --------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~-----~~~~~~~~~~i~~i~~~~~~~~l~ 245 (915)
+.+|..-|.++.|+|.+. .|++++.|.++.+|...+.. - +-.+.+......+..|+|++..++
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~--~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGL--DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchh--hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 138999999999999985 59999999999999876542 1 222233455688999999999999
Q ss_pred EEEcCCcEEEEeCCC---cceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEE--eeC
Q 002496 246 TGSEDGTVRIWHATT---YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA--KHN 320 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~--~~~ 320 (915)
+-+..|..++|.... ......+.+|...|.+++|+|.|.+|.+.+.|.+-+++-.-.. +.-|. ...
T Consensus 333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~---------q~~wHEiaRP 403 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR---------QQEWHEIARP 403 (764)
T ss_pred EecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc---------ccceeeeccc
Confidence 999999999998332 2345567788899999999999999999999999998432211 11122 233
Q ss_pred ceEEEEeeecccce---e-ccCCceeeeeeeecC-----------C-cc---------cCCceEEECCCCCEE-EEEcCC
Q 002496 321 EIQTVNIKSVGADY---E-VTDGERLPLAVKELG-----------T-CD---------LYPQSLKHNPNGRFV-VVCGDG 374 (915)
Q Consensus 321 ~i~~~~~~~~~~~~---~-~~~g~~~~~~~~~~~-----------~-~~---------~~~~~l~~s~~g~~l-av~~~~ 374 (915)
+++-+++....+.- . +...+.-.+...+.+ . +. ..+..+..|..--+. .+-+.+
T Consensus 404 QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~ 483 (764)
T KOG1063|consen 404 QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG 483 (764)
T ss_pred ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence 34444444333210 0 111111111111110 0 00 011122222211111 111111
Q ss_pred cEEE-EEee-c--------------------c--ccc---CccceeEEEEecCCcEEEEecC------CeEEEeccCc--
Q 002496 375 EYII-YTAL-A--------------------W--RNR---SFGSALEFVWSSDGEYAVRESS------SKIKIFSKNF-- 419 (915)
Q Consensus 375 ~~~i-~~~~-~--------------------~--~~~---~~~~~~~~~~s~~g~~l~~~~~------~~i~v~~~~~-- 419 (915)
.-.. +... . | ..+ +.-.+.+++.+|+|+++|+.+. ..|.+|+..+
T Consensus 484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~ 563 (764)
T KOG1063|consen 484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL 563 (764)
T ss_pred ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh
Confidence 1001 1100 0 0 011 1235789999999999998872 3589998542
Q ss_pred -------cceeeeecCcccceeecCcEEEEeeCC-eEEEEeccCCcE-------EEEEEccccEEEEcCCCCEEEEEeCC
Q 002496 420 -------QEKRSVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRL-------IRRIDVTVKNLYWADSGDLVAIASDT 484 (915)
Q Consensus 420 -------~~~~~~~~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~-------i~~~~~~i~~v~~s~dg~~la~~~~~ 484 (915)
......+..|||+ |++|++.+.| ++.+|....... +..+.--|++..|+|++.++++++.|
T Consensus 564 ~~~~L~~HsLTVT~l~FSpd----g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 564 QVQELEGHSLTVTRLAFSPD----GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred hhheecccceEEEEEEECCC----CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 1222334489999 9999999999 999998754321 11222258899999999999999999
Q ss_pred eEEEEEec
Q 002496 485 SFYILKYN 492 (915)
Q Consensus 485 ~~~~~~~~ 492 (915)
..+++|-.
T Consensus 640 K~VkVW~~ 647 (764)
T KOG1063|consen 640 KKVKVWEE 647 (764)
T ss_pred ceEEEEec
Confidence 99987743
No 108
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-25 Score=247.65 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=237.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC
Q 002496 56 TELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNT------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 121 (915)
+...|.++..+|+|..+++|+ .||.++||+... .+.+..+..|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 355789999999999999999 799999998642 233556678999999999999999999999999
Q ss_pred eEEEEECCC-----------------CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC
Q 002496 122 LIKLWDWEK-----------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 122 ~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 184 (915)
.|.+|.... .|++...+.+|...|..++|+| ++.+|++++.|++|.+|+..+.+....+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999998772 1567788999999999999999 9999999999999999999999999999999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc------CeEEEEEeCCCCEEEEEE----cCCcEE
Q 002496 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHPELPIIITGS----EDGTVR 254 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~i~~~~~~~~l~~~~----~dg~v~ 254 (915)
.+.|..+.|.|-|+ ||++-++|++|++|++.+....+.+.++.. .+..+.|||||.+|++.. .-.++.
T Consensus 171 ~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999998 999999999999999887777777665432 477899999999999853 234689
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecC-----CC------------EEEEEecCCeEEEecCCCc-ceeEecCCCcEEE
Q 002496 255 IWHATTYRLENTLNYGLERVWAIGYMKS-----SR------------RIVIGYDEGTIMVKIGREE-PVASMDNSGKIIW 316 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~------------~l~~~~~dg~v~i~~~~~~-~~~~~~~~g~~~~ 316 (915)
|.+-.+++.-..+-+|..++.++.|+|. .+ .+|+|+.|+++.||..... |++...
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------- 321 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------- 321 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------
Confidence 9998888988999999999999999983 11 6788999999999954322 221111
Q ss_pred EeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002496 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 317 ~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
.-....+..++|+|||..|.+|+ ||++.++...
T Consensus 322 ---------------------------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 322 ---------------------------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ---------------------------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 01122457899999999999998 9999988543
No 109
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.6e-26 Score=220.34 Aligned_cols=249 Identities=22% Similarity=0.367 Sum_probs=213.2
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCce----eEEEEecCCCEEEEEEeCCCCEEEEEeC
Q 002496 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTM----AKSFEVTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 5 ~~~~~~l~~h~~~V~~v~~sp~~~---~la~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~~~ 77 (915)
.+..+++.||+++|.+++|.-..+ .+++++.|.++++|.++.+.. ++.-.+|..+|.++...++|..+++|+.
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~ 213 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW 213 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecc
Confidence 455678899999999999876444 499999999999999887743 2334589999999999999999999999
Q ss_pred CCeEEEEECC-------------------------CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe
Q 002496 78 DMFIRVYNYN-------------------------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 78 dg~i~vwd~~-------------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
|.+|.||+.. ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.
T Consensus 214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 9999999931 1234567789999999999998 5679999999999999999983
Q ss_pred eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002496 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
....+. ....+.++..+| ..++|++|+.|..|++||.+++. ..+++.+|..-|.++.|+|.... .|++|+.|+
T Consensus 293 -~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D~ 368 (423)
T KOG0313|consen 293 -LKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYDN 368 (423)
T ss_pred -ceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecCC
Confidence 343333 346689999999 89999999999999999998764 34678899999999999998765 899999999
Q ss_pred eEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 210 TAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 210 ~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
++++||+++.+ ++..+.+|...|.++.|... ..|++||.|.+|+|+...
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 99999999877 89999999999999999864 589999999999998743
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.4e-22 Score=213.83 Aligned_cols=277 Identities=19% Similarity=0.275 Sum_probs=234.7
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002496 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 12 ~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
..|.+.-+.++|.|+|.+|.+++.||.|++|+.... +...++..+...|.+++- .+.+|++|+.+++|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999997665 444555546677777665 55589999999999999999988
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
.-..+....-++++++|+.+|++++.||+|-.|++.+.... .....+.+|..+|.++.|+| .+++||+.+.||.|++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEE
Confidence 77777767788999999999999999999999999999887 66778899999999999999 89999999999999999
Q ss_pred ECCCCCCceEEecC--------CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC--CccCeEEEEEeCC
Q 002496 171 NLGSPDPNFTLDAH--------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPE 240 (915)
Q Consensus 171 d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~ 240 (915)
|+.++....++.+- ...+..++|+|++. .+++.+.|+.|++|+..++.....+.. +...++.++|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCC--eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 99988766655321 34567789999976 588888999999999998888777654 3445899999999
Q ss_pred CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
|+|||+++.||.|.|||+.+... ......|.+++|.|+.+.+-.-...|..-++
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999987222 3344789999999999988887777776664
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=227.02 Aligned_cols=285 Identities=17% Similarity=0.255 Sum_probs=231.5
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
....+..|.+.|..+.|-++...|++|+.|..|.+|+....+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 344567799999999999999999999999999999988766 567777888899999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
++.+. ....++.+|...|+++.|.. +...+++|+.|.+|+.||+....+..+.. ....++.|..+ .. .+++|.
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~--~~~SgH 319 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS--DVISGH 319 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce--eeeecc
Confidence 99988 77888999999999999987 55559999999999999998876665543 23444555554 22 589999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC----CccEEEEEEecC
Q 002496 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKS 282 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~ 282 (915)
.|++|++||.++..+...+..+. .|+++..+++|..|++++.|.++.++|+++.....++... ....+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999999988665 8999999999999999999999999999999887776643 234788999999
Q ss_pred CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002496 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
+.++++|+.||.|+||......+... .+ ..++...+.+++|+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~-------------------------------------l~-~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKV-------------------------------------LS-LSTSNAAITSLSWN 440 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEE-------------------------------------ec-cCCCCcceEEEEEc
Confidence 99999999999999984222211100 00 12222256788888
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002496 363 PNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (915)
|.|+.|+.++ ++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 8888888777 5555555
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=223.06 Aligned_cols=287 Identities=15% Similarity=0.253 Sum_probs=232.9
Q ss_pred eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 49 MAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..++.++.+|.+.|..|+++. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678899999999999988 7899999999999999999999999999999999999987 5689999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.. ...++.+. ..+..+.-+. .++.|++|+. .|.|||..-..|+..+......|.++.|+|.... +|+++++
T Consensus 136 ~~~~--p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas~~s 208 (433)
T KOG0268|consen 136 IDGP--PLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILASCAS 208 (433)
T ss_pred ccCC--cceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch-heeeecc
Confidence 8874 44444432 3456666655 6788888874 5999999999999999988899999999998765 7888889
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l 286 (915)
|+.|.+||++++.+++.+. ....-..|+|+|++-.+++|++|..++.||++... ++.....|.+.|.++.|||.|+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999887765 33445789999988889999999999999998754 677788888999999999999999
Q ss_pred EEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002496 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (915)
Q Consensus 287 ~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (915)
++|+-|.+|+|+-.+......+... + .-..+.++.||.|.+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYht----------------------------k-----------RMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHT----------------------------K-----------RMQHVFCVKYSMDSK 328 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhH----------------------------h-----------hhheeeEEEEecccc
Confidence 9999999999953222211110000 0 001345788888888
Q ss_pred EEEEEc-CCcEEEEEeecc
Q 002496 367 FVVVCG-DGEYIIYTALAW 384 (915)
Q Consensus 367 ~lav~~-~~~~~i~~~~~~ 384 (915)
|+.+|+ ++++.+|....+
T Consensus 329 yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEecCCCcceeeeecchh
Confidence 888888 678888876554
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.9e-25 Score=219.86 Aligned_cols=244 Identities=21% Similarity=0.335 Sum_probs=211.5
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee----EE---E-----------ecCCCCEEEEEEcCCC
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV----KV---F-----------EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----~~---~-----------~~~~~~i~~l~~s~~~ 111 (915)
...+..|..+|.+++++|+.++.++++.+|+|.-|++.+++.. .. + +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556679999999999999999999999999999999887643 11 0 2677889999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002496 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
+||++|+.|..|.||+.++. ...+.+.+|.+.|.+++|-. +.+.+++++.|++|++|++.....+.++.+|+..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999998 67778999999999999987 88899999999999999999988888999999999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-
Q 002496 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
....... .+.+|+.|+++++|++. ......+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+....
T Consensus 293 daL~reR--~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRER--CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcccc--eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 8876665 67778899999999995 4444567788889999999876 47999999999999999988877654421
Q ss_pred -----------CccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 271 -----------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 271 -----------~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
...|++++..|...++++|+.+|.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12789999999999999999999999984
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=4.3e-25 Score=222.45 Aligned_cols=238 Identities=16% Similarity=0.287 Sum_probs=188.4
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002496 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 51 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
-.+++|...|.++++.|.|..|++|+.|..|++||+..+.. .+.+ ......|.++.|+++|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 34667888999999999999999999999999999975432 2222 234557999999999999999999999999
Q ss_pred EECCCCeeEEEE------------eecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce-EEe-----cCCCC
Q 002496 126 WDWEKGWMCTQI------------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-TLD-----AHQKG 187 (915)
Q Consensus 126 wd~~~~~~~~~~------------~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~-----~~~~~ 187 (915)
+|-+.. ..... ..+|...++|.+|+|...+.|++++.||++++||+...+... .+. +..-+
T Consensus 241 ~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 997764 33322 357889999999999888999999999999999997765432 222 33457
Q ss_pred eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc---EEEEecCCcc--CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc
Q 002496 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++|++++. +|++|+.||.|.+|+..... ....-..|.. .|+||.||++|++|++-+.|+++++||+++.+
T Consensus 320 ~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 88999999998 79999999999999985432 2233345665 89999999999999999999999999998765
Q ss_pred -eeeeeec--CCccEEEEEEecCCCEEEEEec
Q 002496 263 -LENTLNY--GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 263 -~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~ 291 (915)
++.+..+ ..-+-+.++|||+.++|++|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 3333222 1234568999999999999875
No 115
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=9e-25 Score=215.84 Aligned_cols=235 Identities=19% Similarity=0.321 Sum_probs=211.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (915)
.+.++...|..+.+++|+.|..+.++|..+++.+.++++|...|+.+.++|+...+++++.|..|++|..... ......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccc
Confidence 5788888888889999999999999999999999999999999999999999999999999999999998876 566777
Q ss_pred ecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 139 EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 139 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
..|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|+|+|- ++.+|..||.|+|||+
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEc
Confidence 88999999999999 999999999999999999999987766553 334589999999997 8999999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeE
Q 002496 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~v 295 (915)
.++..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.... ..+.++.|.+.|++|++++.+=.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999999999999999999999999999999999999999888777766543 369999999999999999766555
Q ss_pred EE
Q 002496 296 MV 297 (915)
Q Consensus 296 ~i 297 (915)
++
T Consensus 457 y~ 458 (506)
T KOG0289|consen 457 YI 458 (506)
T ss_pred EE
Confidence 54
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=210.10 Aligned_cols=289 Identities=19% Similarity=0.338 Sum_probs=219.4
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------------C------ceeEEEecCCCCEEEEEEcCCC
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT------------M------DKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
...+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++-.|.+.|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999861 1 2356777899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEEe--ecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE---ecCCC
Q 002496 112 PYVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQK 186 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~ 186 (915)
..|++|+.|++|+++|.... ...+-+ .....+|.++.|+| .+.++++|....++++||+++-++...- ..|..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred heEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999754 111111 12346799999999 9999999999999999999886644332 46888
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-Cc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002496 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
.|+++.+++.++ +.++++.||.|++||--+++|+.++.. |. ..|.+..|..+|++|++.+.|..+++|.+.+++++
T Consensus 263 ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 263 AITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ceeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 999999999988 899999999999999988999888853 43 45899999999999999999999999999999999
Q ss_pred eeeecCCc--c---EEEEEEecCCCEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccC
Q 002496 265 NTLNYGLE--R---VWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTD 338 (915)
Q Consensus 265 ~~~~~~~~--~---v~~i~~~~~~~~l~~~~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 338 (915)
..+.+... + -+...|+....++..-.+ .+.+. .|+..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc------------------------------------sWdaRt 384 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC------------------------------------SWDART 384 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCcee------------------------------------eccccc
Confidence 88765411 1 112223333333222111 01111 133333
Q ss_pred CceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002496 339 GERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 339 g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
+.++.+- .-.+...++.+.+||.+.-+.+|+ |-...+|..
T Consensus 385 adr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 385 ADRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhc---ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3333221 135667889999999999888888 667787754
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-24 Score=204.30 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=211.6
Q ss_pred ecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-Ccee-EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002496 55 VTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 55 ~~~~~v~~l~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..+..|.+++||| ...++++||.||+||+|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 555666889999999999986 3433 334578999999999999999999999999999999998
Q ss_pred eeEEEEeecCCccEEEEEEecCCCC--EEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002496 132 WMCTQIFEGHSHYVMQVTFNPKDTN--TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
....+..|..+|.++.|-+ ..+ .|++||.|.+|++||+++..++.++. ....+.++.. ..++++++..++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv----~~pm~vVata~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV----LYPMAVVATAER 176 (347)
T ss_pred --CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc----cCceeEEEecCC
Confidence 4455677999999999987 444 89999999999999999999888876 3455666554 445899999999
Q ss_pred eEEEEECCCCcEEEEe--cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc--ceeeeeecCC---------ccEEE
Q 002496 210 TAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGL---------ERVWA 276 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~---------~~v~~ 276 (915)
.|.+|+++++...... ......+.+|+..++....+.|+-+|.+.|..+..+ +.-.+++.|. -.|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 9999999875432211 123345889999999888899999999999988775 3223333332 25788
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002496 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|+|....|++.+.||++.+|....+ ..++....+...+
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar----------------------------------------~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDAR----------------------------------------TKLKTSETHPQPI 296 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhh----------------------------------------hhhhccCcCCCcc
Confidence 999999999999999999999742221 1122235566788
Q ss_pred ceEEECCCCCEEEEEc
Q 002496 357 QSLKHNPNGRFVVVCG 372 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~ 372 (915)
++..|+.+|.++|.+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 8999999999887653
No 118
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.3e-23 Score=231.19 Aligned_cols=223 Identities=16% Similarity=0.226 Sum_probs=181.6
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCee-------EEEEeecCCccEE
Q 002496 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVM 146 (915)
Q Consensus 75 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~i~ 146 (915)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998887788889999999999999997 78999999999999999985421 2345778999999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002496 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+++|+|.....+++++.|++|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|++||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999444566899999999999999988776665 567899999999988 78989999999999999999999999
Q ss_pred CCccCeEEE-----EEeCCCCEEEEEEcCC----cEEEEeCCC-cceeeeeec--CCccEEEEEEecCCCEEEEEecCCe
Q 002496 227 GHTHNVSAV-----CFHPELPIIITGSEDG----TVRIWHATT-YRLENTLNY--GLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 227 ~~~~~i~~i-----~~~~~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (915)
+|.+.+.+. .|++++.+|++++.++ .|+|||+++ .+++..+.. +.+.+......++|.++++|..|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 998765432 3458889999988774 799999985 455544433 2333444444556889999999999
Q ss_pred EEEecC
Q 002496 295 IMVKIG 300 (915)
Q Consensus 295 v~i~~~ 300 (915)
|++|..
T Consensus 287 Ir~~e~ 292 (568)
T PTZ00420 287 CRYYQH 292 (568)
T ss_pred EEEEEc
Confidence 999743
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.5e-25 Score=220.57 Aligned_cols=246 Identities=24% Similarity=0.405 Sum_probs=207.0
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCc----------eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002496 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT----------MAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~ 80 (915)
-|.+.|..+.+-|..+ .+|+++..+.|.|||+.+.. .-..+.+|...-.+++|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5888999999999776 55667778999999986532 122678898878889999864 46889999999
Q ss_pred EEEEECCCCc-------eeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCC-CeeEEEEeecCCccEEEEEEe
Q 002496 81 IRVYNYNTMD-------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK-GWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~~~~-------~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~ 151 (915)
|++||++... ....+.+|.+.|..++|++.. ..++++++|+.+.|||+++ ..++.....+|.+.|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999987543 345678999999999999954 5678999999999999995 235667778999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-----------
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------- 219 (915)
|.++.+||+|+.|++|.+||+++. ++..++.+|...|.++.|+|.... +|++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccccccccChhhhcc
Confidence 999999999999999999999885 467788999999999999998765 8999999999999998631
Q ss_pred ---cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCC
Q 002496 220 ---SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ---~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
+.+..-.||...|..+.|+|+.+ .|++.+.|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466678999999999999887 56678899999999976
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=216.33 Aligned_cols=279 Identities=17% Similarity=0.306 Sum_probs=229.7
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC--CceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~vwd~~~~~~ 91 (915)
.++|++|.|||..+.|++++.||+++||.+.. ...++++.....||.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998754 356677777789999999999999 899999999999999998765
Q ss_pred eEE--EecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEE
Q 002496 92 VKV--FEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 92 ~~~--~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+. ..++. ..+....++|++++|++.+..|.|.+....++ .....+. ..+.|..++|+. ++..|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 443 22333 35778899999999999999999999998887 4444443 457799999997 889999999999999
Q ss_pred EEECCCCCCceEEecCCCCee--EEEEEeCCCcCEEEEEeCCCeEEEEECCC------CcEEEEecCCccCeEEEEEeCC
Q 002496 169 IWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 169 v~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~i~~i~~~~~ 240 (915)
+||++...++.++. ..+.|. +++.++++. |+++|+..|.|.|||..+ .+++..+..-...|+++.|+|+
T Consensus 370 v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFV-DDGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEecCCcceEEEEe-ecCccceeeeeecCCCc--eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999998887775 344454 455555555 999999999999999653 4577777777888999999999
Q ss_pred CCEEEEEEc--CCcEEEEeCCCcceeeeee---cCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 241 LPIIITGSE--DGTVRIWHATTYRLENTLN---YGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 241 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
+++|+.+|. ...+|+-++.+......+. ...+.|+|++|+|.+.++|+|...|.+.+|-
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 999888774 5679998887665544443 3456799999999999999999999999973
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-24 Score=218.70 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=234.7
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
.|.+-|.++.+|...+++.||+ .|.|+|||+... ..+..+.. ....|+++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5999999999999999999998 678999998653 22333332 45679999999999999999999999999997
Q ss_pred CCceeE--EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCC
Q 002496 88 TMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 ~~~~~~--~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
+-.... .+....-....++.+||.+..++|..||.|.|||+.+. .+...+.+|...+.||..++ ++..|.+|+.|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCceeecCCCcc
Confidence 644322 23332345677999999999999999999999999987 88889999999999999999 999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEE
Q 002496 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 166 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 245 (915)
+|+.||++.+....... ....|.++.++|.++ ++++|-.++.+.+.... +.....+..|.+.|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d--WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD--WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCcc--ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence 99999999987665543 467899999999998 89999999999998865 555566777999999999999999999
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+.+.|+.+..|..--|..+...+.. ..|.++.+|.|.++|++|+.|..-.+
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred ecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEE
Confidence 9999999999998877776666544 78999999999999999999876655
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.7e-25 Score=200.39 Aligned_cols=250 Identities=22% Similarity=0.280 Sum_probs=201.0
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEEE-ecCCCCEEEEEECCCcEEEEE
Q 002496 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~-~p~~~~~l~~~~~dg~i~v~d 171 (915)
...|.+.|..+...--|++|++|+.|++|+|+..+++. .....+.+|.++|..+.| +|+-+++|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34688889888888889999999999999999998764 567788999999999999 677899999999999999999
Q ss_pred CCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC---cEEEEecCCccCeEEEEEeCC---C--
Q 002496 172 LGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTHNVSAVCFHPE---L-- 241 (915)
Q Consensus 172 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~i~~~~~---~-- 241 (915)
-.+++- ......|...|++++|.|.+-+..|++++.||.|.+.++++. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887743 334567999999999999998889999999999999998754 223445668889999999996 4
Q ss_pred ---------CEEEEEEcCCcEEEEeCCCcc--eeeeeecCCccEEEEEEecCC----CEEEEEecCCeEEEecCCCccee
Q 002496 242 ---------PIIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMVKIGREEPVA 306 (915)
Q Consensus 242 ---------~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~v~i~~~~~~~~~ 306 (915)
+.|++|+.|..|+||+..+++ +..++..|.+.|+.++|.|.- ..||+++.||++.||.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--- 243 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--- 243 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc---
Confidence 469999999999999987754 566789999999999999974 57999999999999742211
Q ss_pred EecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002496 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.-+-..+-+......+-.++||+.|.+|++++ ++.+.+|.-
T Consensus 244 ----------------------------------~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 ----------------------------------YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ----------------------------------cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 00000111122334567889999999998877 788888743
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.2e-24 Score=202.99 Aligned_cols=246 Identities=19% Similarity=0.327 Sum_probs=216.4
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++++.+.+|...|..++-......+.+++.|.+-+||.+++|.++..+.+|.+.|.++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45677889999999999888888889999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCCC---------------------------------eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEE
Q 002496 128 ------WEKG---------------------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 128 ------~~~~---------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+... ..+...+.+|.+.|.++.|-. ++..+++++.|.+..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 1110 244556788999999999998 899999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002496 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 169 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~ 247 (915)
+||+.++.++..+.+|....+.++-+|... ++++.+.|.+.++||++.. ..+..|++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcce--EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999998888766 8999999999999999843 3577899999999999999875 68999
Q ss_pred EcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 248 SEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+.|.+|++||+++.+ .+.++... .++..++.+..+..|++-.++..|+++
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred CCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEE
Confidence 999999999999876 45555544 778889999988899998888888883
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=198.66 Aligned_cols=252 Identities=19% Similarity=0.251 Sum_probs=210.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC---ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~~dg~i~ 82 (915)
++.-.+|.+.|..+...--|++|||++.|++|+|+..+.. +++.++.+|.+||..++|.. -|..||+++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3455689999999999999999999999999999998764 46788999999999999976 799999999999999
Q ss_pred EEECCCCcee--EEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCC--CeeEEEEeecCCccEEEEEEecCC--
Q 002496 83 VYNYNTMDKV--KVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEK--GWMCTQIFEGHSHYVMQVTFNPKD-- 154 (915)
Q Consensus 83 vwd~~~~~~~--~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~p~~-- 154 (915)
||...+++.. .....|...|++++|-|. |-.|++++.||.|.+.+.++ ++....+...|.-.|.+++|.|..
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9998887543 345689999999999986 56789999999999998874 455666778899999999999831
Q ss_pred C-----------CEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCC--CcCEEEEEeCCCeEEEEECCCC
Q 002496 155 T-----------NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGG--DKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 155 ~-----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+ ..|++|+.|..|+||+..+++ ...++.+|..-|..++|.|.- ...+|++++.||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 469999999999999998763 334578999999999999975 2347999999999999987632
Q ss_pred c---EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 220 S---CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ~---~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
. ....+......+..+.||+.|++|++++.|+.|.+|.-.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122334456789999999999999999999999999743
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7e-23 Score=184.81 Aligned_cols=245 Identities=19% Similarity=0.303 Sum_probs=206.2
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce-----eEEEEecCCCEEEEEEeCC----CCEEEEEeC-CC
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM-----AKSFEVTELPVRSAKFVAR----KQWVVAGAD-DM 79 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~s~~----~~~l~~~~~-dg 79 (915)
.-+.|.+.|.|.+|||+|.+||+|+.|.+|++.-+..... -..|..|++.|+.++|-.+ +..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3457999999999999999999999999999976554322 2457789999999999653 456776654 78
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec-------CCccEEEEEEec
Q 002496 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~p 152 (915)
.|++-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-. .+...+.. ..+.|.+++..|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECC
Confidence 888889999999999999999998773 335778999999999999999876 45544431 136789999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCC
Q 002496 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGH 228 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 228 (915)
.+++|++|..|....+||++.+++++.+..|...|.|+.|+|... |+++++.|..|++-|++.. -++..+..|
T Consensus 242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce--EEEEecccceEEEeecccchhhcCceEEEEec
Confidence 999999999999999999999999999999999999999999887 9999999999999998732 134455668
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 229 THNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8889999999998888999999999999754
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=196.04 Aligned_cols=282 Identities=15% Similarity=0.187 Sum_probs=213.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee--EE--EEecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KS--FEVTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~--~~--~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~ 82 (915)
...|++|++.|++++|+.||++||+++.|+.|+||+++.-... +. ....-+..+.+.|+||-+-+++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568899999999999999999999999999999998763211 11 1112235678999999877666554 45899
Q ss_pred EEECCC---Ccee---------EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEE
Q 002496 83 VYNYNT---MDKV---------KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (915)
Q Consensus 83 vwd~~~---~~~~---------~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 150 (915)
+|-+.. |... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++ | +..+.+......-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceee
Confidence 997642 1111 1112456667777788888999999999999999999 4 455555555555677889
Q ss_pred ecCCCCEEEEEECCCcEEEEECC---CC-----CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----
Q 002496 151 NPKDTNTFASASLDRTIKIWNLG---SP-----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT---- 218 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 218 (915)
+| +++++++++..--|++|.+- .| ...+.+.+|...|...+|+++.. .+++.+.||++++||+.-
T Consensus 237 SP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 237 SP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred CC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeeccceEec
Confidence 99 99999999999999999862 22 34678899999999999999988 599999999999999752
Q ss_pred Cc---EEEEe----cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee-cCCccEEEEEEecCCCEEEEEe
Q 002496 219 KS---CVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 219 ~~---~~~~~----~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
++ .++.. ....+....+.++|+|+.|+.+. ...+++|..++|+...++. .|...|.+++|+++|+++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 22 12222 11233345899999999888765 5589999999988766554 5678899999999999999887
Q ss_pred cCCeE
Q 002496 291 DEGTI 295 (915)
Q Consensus 291 ~dg~v 295 (915)
+.-..
T Consensus 393 dr~vr 397 (420)
T KOG2096|consen 393 DRYVR 397 (420)
T ss_pred ceeee
Confidence 64433
No 127
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.9e-24 Score=228.31 Aligned_cols=250 Identities=20% Similarity=0.394 Sum_probs=194.9
Q ss_pred eEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--------------------------------C-------
Q 002496 92 VKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--------------------------------G------- 131 (915)
Q Consensus 92 ~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------- 131 (915)
.+.+. .|.+.|+++.||+||+|||+|+.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998655 0
Q ss_pred --------------------eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002496 132 --------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 132 --------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
..+...+.+|.+.|..+.|+ .+++|++++.|.+|++|++...+++..|. |..-|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 12233456899999999999 48899999999999999999888888876 99999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-
Q 002496 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
+|+|..++ |+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....++......+
T Consensus 416 aFnPvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99998776 99999999999999998766655444 4478999999999999999999999999998877765544321
Q ss_pred -------CccEEEEEEecCCC-EEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCcee
Q 002496 271 -------LERVWAIGYMKSSR-RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 271 -------~~~v~~i~~~~~~~-~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
..+|+.+.|.|... .+.+.+.|..|+|..+++..+..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~----------------------------------- 538 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH----------------------------------- 538 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-----------------------------------
Confidence 23799999998644 58888899999985443222111
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecc
Q 002496 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAW 384 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~ 384 (915)
.++...... .-..-.|+.||++|++++ |..+++|.....
T Consensus 539 --KfKG~~n~~-SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 --KFKGFRNTS-SQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred --hhcccccCC-cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 111111111 113557888999998888 778888876544
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9.4e-23 Score=193.85 Aligned_cols=263 Identities=17% Similarity=0.278 Sum_probs=217.2
Q ss_pred EEEEEcCCcEEEEECCCC------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002496 30 ILASLYSGTVCIWNYQSQ------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 30 la~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
|++|++...|.=+++... ..+..+..|.+++++++. ++.++++|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 667777766666654321 124456789999999998 688999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002496 98 HTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
|.+.|+++.|.+.-. .|++|++||.|.+|+... |.+...+.+|.+.|+.++.+| .+.+-++.+.|+.++.|++-.+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence 999999999998765 899999999999999876 589999999999999999999 8889899999999999999998
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEE
Q 002496 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~i 255 (915)
+.-+.+.- ...-..+.|+|.|+ +++.+..+ .|-+|.+.+......+.. ...+.++.|.. +..|++|+.|+.|++
T Consensus 160 r~a~v~~L-~~~at~v~w~~~Gd--~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSPQGD--HFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred ccceeecc-CCcceeeEEcCCCC--EEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEecCCceEEE
Confidence 87766653 23335599999988 57766654 688999887666555542 24566666654 468999999999999
Q ss_pred EeCCCcceeeeeecCCccEEEEEE--ecCCCEEEEEecCCeEEEecCCC
Q 002496 256 WHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~v~i~~~~~ 302 (915)
||.....+...+..|..+|.++.+ .|++.+|++++.||.|.+|....
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999989999999999999999884 45688999999999999996443
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.4e-24 Score=212.41 Aligned_cols=252 Identities=17% Similarity=0.266 Sum_probs=215.6
Q ss_pred eEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE
Q 002496 29 WILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (915)
Q Consensus 29 ~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 107 (915)
+++++.. ...+.+|.+...........-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555543 456899998776555544456789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECCC--------CeeEEEEeecCCccEEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCc
Q 002496 108 HPTLPYVLSSSDDMLIKLWDWEK--------GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~v~d~~~~~~~ 178 (915)
+.||.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+. -...++++|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999997632 23567788899999999998773 3568999999999999999999887
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----------------cEEEEecCCcc--CeEEEEEeCC
Q 002496 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------------SCVQTLEGHTH--NVSAVCFHPE 240 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~i~~i~~~~~ 240 (915)
.++. .+..+.+++..|.+. .+.+|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-|
T Consensus 212 lti~-fp~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEe-cCCcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 7765 578899999999887 7999999999999887432 24556778887 9999999999
Q ss_pred CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC
Q 002496 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
|.+|++|+.||.|++||+.+.++++++....++|+.+.+.|-.
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999999999988777899999887653
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.7e-23 Score=194.23 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=212.0
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE-----EEEeecCCccEEEEEEecCCCCEEEEEECCCcEE
Q 002496 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-----TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+++|.+.|++++|+.||++|++++.|++|++|+++.-... ...+. -+..+.+.|.|+-...++.+-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999998753111 11111 123578999995455566666667899
Q ss_pred EEECCCCC---CceE--------E-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002496 169 IWNLGSPD---PNFT--------L-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 169 v~d~~~~~---~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
+|.+...+ .... + ..|...+..+-. .+...+|++++.|..|.+|+++ |+.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99874321 1111 1 123334444444 3444499999999999999998 999999988888888899
Q ss_pred EeCCCCEEEEEEcCCcEEEEeCC---Cc-----ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEe
Q 002496 237 FHPELPIIITGSEDGTVRIWHAT---TY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~---~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~ 308 (915)
.||+|++|++++---.|++|.+- .| .....+.+|...|..++|+++...+++.+.||++++|...-+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr----- 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR----- 310 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----
Confidence 99999999999998899999853 22 245678899999999999999999999999999999843221
Q ss_pred cCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc---
Q 002496 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--- 385 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~--- 385 (915)
+....+-.+ +..|. ..+......+-.++.+|+|+.||+.....+.+|.....+
T Consensus 311 -------Y~~~qDpk~-----------Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 311 -------YEAGQDPKI-----------LKEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred -------EecCCCchH-----------hhcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 111111000 11221 112223345568999999999999999999999766543
Q ss_pred ---ccCccceeEEEEecCCcEEEEecCCeEEEe
Q 002496 386 ---NRSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (915)
Q Consensus 386 ---~~~~~~~~~~~~s~~g~~l~~~~~~~i~v~ 415 (915)
..+.+.|.+++|+++|+|+++..+..++++
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 334578899999999999999999999987
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.8e-23 Score=209.17 Aligned_cols=244 Identities=22% Similarity=0.347 Sum_probs=204.5
Q ss_pred ecCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCc----------eeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCe
Q 002496 55 VTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMD----------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDML 122 (915)
Q Consensus 55 ~~~~~v~~l~~s~~~~~-l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~ 122 (915)
.|.+.|+.+..-|.... +++++..+.|.|||+.+-. +-..+.+|.+.-.+++|++.. -+|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 38889999999997655 5566788999999986421 112677888877889999864 47899999999
Q ss_pred EEEEECCCCe------eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC--CCCCceEEecCCCCeeEEEEE
Q 002496 123 IKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 123 i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~ 194 (915)
|++||+.... .....+.+|...|..++|+|...++|++++.|+.+.|||++ +.++......|..+|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997542 24567889999999999999999999999999999999999 566677788999999999999
Q ss_pred eCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCc-----------
Q 002496 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTY----------- 261 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~----------- 261 (915)
|-+.. +|++|+.|++|++||+|+ .+++.++.+|...|.++.|+|+. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 98754 899999999999999997 45789999999999999999965 58889999999999998642
Q ss_pred ---ceeeeeecCCccEEEEEEecCCCE-EEEEecCCeEEEec
Q 002496 262 ---RLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKI 299 (915)
Q Consensus 262 ---~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~v~i~~ 299 (915)
+++....+|...|..+.|+|...+ |++.++|+.+.||.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234566778889999999999765 55688999999984
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.2e-23 Score=214.69 Aligned_cols=282 Identities=21% Similarity=0.295 Sum_probs=233.1
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE--EEecCCCCEEE-EEEcC-CCCEEEEEEcCCeE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFEAHTDYIRC-VAVHP-TLPYVLSSSDDMLI 123 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~-l~~s~-~~~~l~~~~~dg~i 123 (915)
++-+.+.+|+..|+.++..+.. ++++++.||++++|+-..++.+. .+.+|.+.|.+ +++-+ ++-++++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4567889999999998876544 89999999999999976655443 46677787777 77775 44569999999999
Q ss_pred EEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEE
Q 002496 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
.+|...+. .+..++.+|...|+++.... ++ .+++||.|.++++|-. ++....+.+|...|+.+...|.+ .++
T Consensus 84 ~v~~~~~~-~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~---~~v 155 (745)
T KOG0301|consen 84 IVFKLSQA-EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN---TYV 155 (745)
T ss_pred EEEecCCC-CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC---cEE
Confidence 99999887 78889999999999998765 44 4999999999999975 45566689999999999999887 499
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC
Q 002496 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
+|+.|.+|++|.- ++.++++.+|...|..+++-+++ .+++++.||.|++|++ +|..+..+.+|..-+++++...++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 9999999999984 88999999999999999999985 4788999999999998 799999999999999999988899
Q ss_pred CEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002496 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (915)
Q Consensus 284 ~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (915)
+.++++++|++++||.... . .+.+ ......+.+..+-+
T Consensus 232 ~~Ivs~gEDrtlriW~~~e-~-----------------~q~I------------------------~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKDE-C-----------------VQVI------------------------TLPTTSIWSAKVLL 269 (745)
T ss_pred CeEEEecCCceEEEeecCc-e-----------------EEEE------------------------ecCccceEEEEEee
Confidence 9999999999999984330 0 0111 11112334667778
Q ss_pred CCCEEEEEcCCcEEEEEeecc
Q 002496 364 NGRFVVVCGDGEYIIYTALAW 384 (915)
Q Consensus 364 ~g~~lav~~~~~~~i~~~~~~ 384 (915)
+|..++.|+||.++||+....
T Consensus 270 NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 270 NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCCEEEeccCceEEEEEeccc
Confidence 899999999999999976643
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.5e-22 Score=192.46 Aligned_cols=269 Identities=18% Similarity=0.209 Sum_probs=210.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|..+.|+|.++.|++++.||.+++|+..+......++ |..++.+++|.++ ..+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 45679999999999999999999999999998875555554 8899999999974 57999999999999999987 34
Q ss_pred EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|...|.|+.+++ ..+.+++|+.|++|++||.+.......+.. ...|.++... ++ .|++|+.+..|.+||
T Consensus 88 ~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~--~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN--RLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC--EEEEeecCceEEEEE
Confidence 55677999999999998 788999999999999999987655555553 4478877763 44 699999999999999
Q ss_pred CCCCcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc----ceeeeeecCC---------ccEEEEEEe
Q 002496 216 YQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL---------ERVWAIGYM 280 (915)
Q Consensus 216 ~~~~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~---------~~v~~i~~~ 280 (915)
+++.....+.. ...-.+.++++.|++.-.++++-||.|.+=.+... +....++.|. -+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99866543222 23456889999998888899999999887554443 2222333331 368999999
Q ss_pred cCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002496 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|-.+.+++|+.||.|.+|....+. + ++++...+..+..++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rK------------------------------------r----l~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRK------------------------------------R----LKQLAKYETSISSLS 281 (323)
T ss_pred cccceEEecCCCceEEEccCcchh------------------------------------h----hhhccCCCCceEEEE
Confidence 999999999999999998433221 1 112233344577999
Q ss_pred ECCCCCEEEEEcCC
Q 002496 361 HNPNGRFVVVCGDG 374 (915)
Q Consensus 361 ~s~~g~~lav~~~~ 374 (915)
|+.+|..||++++-
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999998743
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.9e-23 Score=214.48 Aligned_cols=286 Identities=21% Similarity=0.325 Sum_probs=228.4
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE--EEEEeCCC-----
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW--VVAGADDM----- 79 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~--l~~~~~dg----- 79 (915)
+...+.||++.|+|++.+|.|.|||+|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+.. ||++-...
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345578999999999999999999999999999999999999999887 5568999999997653 33332222
Q ss_pred ---------------------------eEEEEECCCC---c-eeEEEecCCCCEEEEEEcCCCCEEEEEEcC---CeEEE
Q 002496 80 ---------------------------FIRVYNYNTM---D-KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---MLIKL 125 (915)
Q Consensus 80 ---------------------------~i~vwd~~~~---~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i~i 125 (915)
.+..|.-... + -++..-.|...|+.+.|+..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2223322210 0 123334688899999999999999987654 57889
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002496 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.++... .....|....+.|.++.|+| ...+|++++ ...|++||+.....+..+.....-|..++++|.|++ |+.|
T Consensus 551 HQLSK~-~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn--li~g 625 (733)
T KOG0650|consen 551 HQLSKR-KSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN--LILG 625 (733)
T ss_pred Eecccc-cccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe--EEEe
Confidence 998876 44455666678899999999 666676665 478999999888777777777788999999999995 9999
Q ss_pred eCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc---------eeeeeecCCcc--
Q 002496 206 SDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---------LENTLNYGLER-- 273 (915)
Q Consensus 206 ~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~-- 273 (915)
+.|+.+..+|+.-. ++.+++..|...+++++||+.-+++++|+.||++.+|.-.-+. ++..+.+|...
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999754 5677888899999999999999999999999999999733211 34556666443
Q ss_pred --EEEEEEecCCCEEEEEecCCeEEEe
Q 002496 274 --VWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 274 --v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
|..+.|+|...+|++++.||++++|
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEee
Confidence 8889999999999999999999986
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=207.10 Aligned_cols=289 Identities=19% Similarity=0.261 Sum_probs=228.3
Q ss_pred hhhcccCCCCEEEEEEcCCCC--eEEEEEcCCcEEEEECCCC----ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002496 8 KRKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~--~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~ 80 (915)
.....-|.++|++++|||..+ .+|+|...|.|-+||+.+. .-+..+..|.++|.++.|+|.. ..+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 344567899999999999765 7888999999999999533 3455678899999999999954 67899999999
Q ss_pred EEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 81 IRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
|+.-|++++..-..+.. ....+..+.|+.+.+.++.+..=|.+.+||.+++......+.-|...|.+++++|-...+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987644333332 4456788899998888999988889999999987665666777888999999999888999
Q ss_pred EEEECCCcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC----CCcEEEEecCCcc
Q 002496 159 ASASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ----TKSCVQTLEGHTH 230 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~ 230 (915)
++++.|++.+|||++.-. +......|...|++..|+|.+. .|++.+.|..|+|||.. ...+..++. |..
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 999999999999997633 2344567999999999999987 49999999999999973 222333332 221
Q ss_pred ----C--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCc-cEEE-EEEecCCC-EEEEEecCCeEEEec
Q 002496 231 ----N--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWA-IGYMKSSR-RIVIGYDEGTIMVKI 299 (915)
Q Consensus 231 ----~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~-i~~~~~~~-~l~~~~~dg~v~i~~ 299 (915)
. .....|.|+..+|++|-.-..|-|+|-..++.+..+..+.. .|.+ ..|+|-+. +++.|+..|.+.+|.
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 1 34568999999999999999999999988888887665543 4444 57999988 444556678887764
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.3e-23 Score=194.17 Aligned_cols=278 Identities=10% Similarity=0.177 Sum_probs=217.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
-.|+.|++-|.+||+|+.||.|.|||+.|...-+.+.+|-.||++++||++|+.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999988887
Q ss_pred CCCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCeeEEEEeecC-----CccEEEEEEecCCCCEEEEEECCCcEEEEE
Q 002496 98 HTDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d 171 (915)
..++|+...|+|.....+ ++--+..-.+-++..+ ....+... +..-.+..|.+ .++++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEe
Confidence 467999999999654333 3323333444444432 11111111 11122335777 899999999999999999
Q ss_pred CCCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-------CcE--EEEecC--CccCeEEEEEeC
Q 002496 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KSC--VQTLEG--HTHNVSAVCFHP 239 (915)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~--~~~~~~--~~~~i~~i~~~~ 239 (915)
..+.+.+..++-.. ..|..+.++..|. .+++.+.|+.|+.|+++. +++ .+.++. ....-.+++|+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988887776555 7788899988887 799999999999999862 111 111111 122345789999
Q ss_pred CCCEEEEEEc-CCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeEEEecCCC
Q 002496 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~ 302 (915)
+|.+++.|+. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|....
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 9999988774 3469999999999999999887 568889999998777766 889999985433
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.3e-22 Score=190.69 Aligned_cols=283 Identities=18% Similarity=0.291 Sum_probs=226.3
Q ss_pred ccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCc----------eeE-----EEEecCCCEEEEEEeC-CCCEEEE
Q 002496 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQT----------MAK-----SFEVTELPVRSAKFVA-RKQWVVA 74 (915)
Q Consensus 12 ~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~~~----------~~~-----~~~~~~~~v~~l~~s~-~~~~l~~ 74 (915)
..|.+.|.++...+ .|+++++|+.||.|.+||++.-. .+. .-.+|.-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999998 57899999999999999997642 111 1125677899999999 5567778
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC---CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEe
Q 002496 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 75 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (915)
++-|.+++|||.+|.+....|+ ..+.|.+-+|||- ..++++|..+-.|++.|+.++ ...+++.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence 8889999999999998888876 4677888889883 347889999999999999999 8899999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCce--------------EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSP-DPNF--------------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~-~~~~--------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
|...-.|++|+.||.|++||++.- .+.. .-..|.+.|+.++|..++. ++++.+.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeec
Confidence 988888999999999999999643 1111 1235778899999999888 7999999999999999
Q ss_pred CCCcEEEEecC---Ccc----CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE
Q 002496 217 QTKSCVQTLEG---HTH----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 217 ~~~~~~~~~~~---~~~----~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (915)
.+|+....-.+ |.. .+. +. +-+...++.--.++.+.++++-.|..+..+..|...+.+..+.|+-+...+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88763221110 111 111 22 3333344444456889999999999999999998899999999999999999
Q ss_pred ecCCeEEEecC
Q 002496 290 YDEGTIMVKIG 300 (915)
Q Consensus 290 ~~dg~v~i~~~ 300 (915)
..|+.+..|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999854
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=202.54 Aligned_cols=260 Identities=17% Similarity=0.286 Sum_probs=216.4
Q ss_pred CCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 36 SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..++.+||+++|....++++. ...-.++..- .+.+++++. ....|.+|.+..........--+++|.+++-+|.|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 456999999999988888765 2222222222 235566654 4568999998765554433345778999999999999
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC---------CCCCceEEecC
Q 002496 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------SPDPNFTLDAH 184 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~---------~~~~~~~~~~~ 184 (915)
|+.|+..|.|++|.+.+| .+...+..|-..|+|+.|+. |+.+|++|+.||.|.+|++. +.++...+..|
T Consensus 96 l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 999989999999999999 77778899999999999998 99999999999999999872 34677888999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--
Q 002496 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-- 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 262 (915)
.-+|+.+...+.+....+++++.|.++++||+..|..+.++. ....+.+++.+|-+..+++|+.+|.|.+.++.+..
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 999999999998888899999999999999999999888887 56789999999999999999999999988764322
Q ss_pred --------------eeeeeecCCc--cEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 263 --------------LENTLNYGLE--RVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 263 --------------~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
.+..+.+|.+ .|+|++.+-||..|++|+.||.+.+|.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 3445667766 899999999999999999999999983
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=200.70 Aligned_cols=286 Identities=13% Similarity=0.210 Sum_probs=218.4
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCe
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 132 (915)
..++|+++.|+|....+++++.|++++||.+.. ...++.+.-...+|.+..|.|+|. .+++++....++.||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a- 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA- 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-
Confidence 356899999999999999999999999998753 345666666678999999999999 8999999999999999876
Q ss_pred eEEEE--eecC-CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC
Q 002496 133 MCTQI--FEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 133 ~~~~~--~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
+..+. ..++ ...+.....+| ++++|++.+..|.|.+....+++.+..++ ..+.|..++|+.++. .|++.+.+|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~G 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTG 366 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCc
Confidence 32222 2233 34566778889 89999999999999999999998888876 578899999998886 688888899
Q ss_pred eEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCcEEEEeCCC------cceeeeeecCCccEEEEEEecC
Q 002496 210 TAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRIWHATT------YRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
.|.+||++...+++.+....+ .-+++|.++++.++++|+..|.|.|||..+ .+++..+..-...|+++.|+++
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999999999888863322 246788889999999999999999999653 3455555555578999999999
Q ss_pred CCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002496 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
++.||+++....=.+.+-+-+....+.. |.. ....-..+++++||
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsN-----------------------fP~------------~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSN-----------------------FPT------------SNTKVGHVTCMAFS 491 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeecc-----------------------CCC------------CCCcccceEEEEec
Confidence 9999998764332222111111100000 000 12223467899999
Q ss_pred CCCCEEEEEc-CCcEEEEEe
Q 002496 363 PNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~~~ 381 (915)
|.|.++|++. .|++.+|.+
T Consensus 492 P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCceEEeecCCCceeeEee
Confidence 9999999998 788888864
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-24 Score=227.15 Aligned_cols=259 Identities=20% Similarity=0.407 Sum_probs=232.0
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+.+++.+-..-.++||+.+. +..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 33444444555677887533 445888888888877889999999999999999887777778999999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC
Q 002496 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 186 (915)
|++...+|+.|+.+|+|++||++.. ...+.+.+|...+.++.|+| -+.+++.|+.|+.+.+||++...+.+.+.+|..
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999999999999999988 66778899999999999999 888999999999999999998889999999999
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002496 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.|.++.|+|+|. +++.|++|..++|||...|+.+..|..|...+.++.|+|..-++++|+.|++|++||+.+...+..
T Consensus 156 vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 156 VVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeEEEeecCCCc--eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 999999999998 899999999999999999999999999999999999999988999999999999999999999988
Q ss_pred eecCCccEEEEEEecCCCEEEEEecCCeE
Q 002496 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~v 295 (915)
.......|.+.+|+|++..+.+|......
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhhh
Confidence 88888899999999999998888765443
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=6.1e-22 Score=204.07 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=110.6
Q ss_pred hhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCceeE------EEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002496 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK------SFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~------~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i 81 (915)
-.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|...+ .+.+..-.|.|+.|+|...-|...+..|.+
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34678999999999999 45689999999999999998553221 122345578999999988878888888999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC
Q 002496 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
.|||+.+++.+..+.+|.+.|.++.|+.||..|++++.|..|+|||.+......+...+|
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 999999999999999999999999999999999999999999999987654444444444
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.7e-24 Score=224.48 Aligned_cols=238 Identities=24% Similarity=0.420 Sum_probs=221.7
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~ 88 (915)
+.+..|+..|.++..-..++.+++|+.+..+-+|.+..-..+..+.+|.++|.++.|++...+|++|+.+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 56778999999999988889999999999999999888778888999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEE
Q 002496 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
++.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++.. -+...+.+|...+.++.|+| ++.+++.++.|.+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCcceee
Confidence 9999999999999999999999999999999999999999954 58888899999999999999 999999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002496 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 169 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~ 248 (915)
+||+..++....|..|.+.+..+.|+|..- +++.|+.|+++++||+++.+.+.........|.+..|+|++..+++|.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eecccccccccccccccccccccccCchhh--hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999999999988765 789999999999999999888888888888999999999999888887
Q ss_pred cC
Q 002496 249 ED 250 (915)
Q Consensus 249 ~d 250 (915)
..
T Consensus 258 q~ 259 (825)
T KOG0267|consen 258 QI 259 (825)
T ss_pred hh
Confidence 65
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.2e-22 Score=204.03 Aligned_cols=274 Identities=20% Similarity=0.355 Sum_probs=218.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC--eeEEEEe--ecCCccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--WMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
.|..-|..+.+|...+++.+|+. |.|+|||+... +.....+ .....+|.++...| +++.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 57888889999999999999886 68999999753 1222222 23457899999999 9999999999999999999
Q ss_pred CCCCCceEEecCC--CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002496 173 GSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
....+........ .....++.+|+.+ +.++++.||.|.|||+++...++.|++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 8876654433223 3456678888877 78899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeec
Q 002496 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
++||.||+++++.+...... ..|.++.++|++.+|++|-.++.+.+-....+
T Consensus 573 ntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~skp--------------------------- 624 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--------------------------- 624 (705)
T ss_pred cceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEecCCc---------------------------
Confidence 99999999999877766554 78999999999999999999998877211110
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeec----ccccCccceeEEEEecCCcEEE
Q 002496 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALA----WRNRSFGSALEFVWSSDGEYAV 405 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~----~~~~~~~~~~~~~~s~~g~~l~ 405 (915)
++ ..+..++.-|-++.|++.|++++..+ |+-+-.|.... ...+...+|+++..|.|.+|++
T Consensus 625 ---------~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 625 ---------EK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred ---------cc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 00 01234455567899999999999877 88888886543 3456667889999999999999
Q ss_pred Eec-CCeEEEec
Q 002496 406 RES-SSKIKIFS 416 (915)
Q Consensus 406 ~~~-~~~i~v~~ 416 (915)
+++ +.+-.||.
T Consensus 691 TGSGdkkATVYe 702 (705)
T KOG0639|consen 691 TGSGDKKATVYE 702 (705)
T ss_pred ecCCCcceEEEE
Confidence 998 55666764
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.4e-23 Score=219.15 Aligned_cols=242 Identities=19% Similarity=0.319 Sum_probs=203.8
Q ss_pred EEEEEEcC-CCCeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcee
Q 002496 18 VKSVDLHP-SEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 18 V~~v~~sp-~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
+..|.|+. +.++|||++.+|.|.+||+.. .+++..|..|+..++++.|++.. .+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 45677875 567999999999999999987 56667788999999999999854 67889999999999999998888
Q ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEE
Q 002496 93 KVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d 171 (915)
.++.+....|+.+.|+| .+.+++++.+.|.+.+||++....+...+..|.++|.|+.|+| +..+||+|+.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 88888899999999999 4678899999999999999988788888999999999999999 999999999999999999
Q ss_pred CCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEe--CCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEE
Q 002496 172 LGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIIT 246 (915)
Q Consensus 172 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~-~~~~l~~ 246 (915)
..+++...... ....+|.++.|-|.... .|++++ .|-.|+|||++.. -+..++..|...++.++|.. +...+.+
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 98665433322 24578999999998763 666665 4788999999754 35677888999999999976 4457889
Q ss_pred EEcCCcEEEEeCCCc
Q 002496 247 GSEDGTVRIWHATTY 261 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~ 261 (915)
++.||.|..-.+++.
T Consensus 328 ~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNA 342 (839)
T ss_pred ecCccHHHHhhhhcc
Confidence 999998876555443
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.9e-20 Score=199.55 Aligned_cols=266 Identities=14% Similarity=0.146 Sum_probs=203.0
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002496 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++++.||.|++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888999999999999998888876544 6789999999977 5667789999999999888877765544 56789
Q ss_pred EcCCCCEEEEE-EcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCceEEecC
Q 002496 107 VHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 107 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~ 184 (915)
|+|+++.++++ +.++.|++||+.+. .....+.. ...+.+++|+| ++..+++++.++ .+.+||..+++...... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 99999977655 56899999999886 44444432 23467899999 888888888765 46778988776554443 2
Q ss_pred CCCeeEEEEEeCCCcCEEE-EEeCCCeEEEEECCCCcEEEEecCCc-------cCeEEEEEeCCCCEEEEE-EcCCcEEE
Q 002496 185 QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLEGHT-------HNVSAVCFHPELPIIITG-SEDGTVRI 255 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~l~~~-~~dg~v~i 255 (915)
...+.++.|+|++. +++ ++..++.|++||+.+++.+..+..+. .....++|+|++++++++ +.++.+.+
T Consensus 156 ~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 34557889999887 454 44568999999999988776654221 123468899999976543 45678999
Q ss_pred EeCCCcceeeeeecCCccEEEEEEecCCCEEEEE-ecCCeEEEecCCC
Q 002496 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIGRE 302 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~v~i~~~~~ 302 (915)
||+.+++....+.. ...+++++|+|+|++|+++ ..+|.|.+|....
T Consensus 234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 99998887765543 3578999999999999886 4689999975443
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-22 Score=214.37 Aligned_cols=277 Identities=21% Similarity=0.356 Sum_probs=219.1
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEec---CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVT---ELPVRSAKFVA-RKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~---~~~v~~l~~s~-~~~~l~~~~~dg~i~vwd~~ 87 (915)
....+|+..++-..|++++. ..+.||.+.... +...+... ...+..++|.. +.++||+++..|.|.+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45677888898888888874 478888765432 11111111 12355678874 46789999999999999998
Q ss_pred C---CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 88 T---MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 88 ~---~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
. .+.+..|..|...+.+++|++..+ +|++||.||+|++||++.. ....++.+....|..+.|+|..++.|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecC
Confidence 6 455667889999999999999664 6789999999999999987 5566677788889999999999999999999
Q ss_pred CCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc--EEEEecCCccCeEEEEEeCC
Q 002496 164 DRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 164 dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~i~~~~~ 240 (915)
.|.+.+||++... +...+..|.++|.|+.|+|++. +|++|+.|+.|+|||..+++ .+.++. ...+|..+.|-|.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 9999999998764 4567889999999999999665 99999999999999998654 344443 4568999999998
Q ss_pred CCE-EEEEE--cCCcEEEEeCCC-cceeeeeecCCccEEEEEEec-CCCEEEEEecCCeEEE
Q 002496 241 LPI-IITGS--EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMV 297 (915)
Q Consensus 241 ~~~-l~~~~--~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~v~i 297 (915)
.++ |++++ .|-.|+|||++. +-+..++..|...++.++|.. |...+.+++.||++..
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 774 44443 467899999874 446678888989999999976 3456677888888765
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=184.15 Aligned_cols=235 Identities=16% Similarity=0.286 Sum_probs=183.5
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee
Q 002496 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 60 v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+. +.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999984 555544
Q ss_pred cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC----CeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----GVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..++|+.+.|+|.+.+.+++.-.+..-.+-++..++...--....+ .-.+..|.+.|+ |+++|...|.+.++|
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEe
Confidence 5688999999998888888777777666666655322111111111 112234666666 999999999999999
Q ss_pred CCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCc-------cee--eeeec--CCccEEEEEEecCC
Q 002496 216 YQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTY-------RLE--NTLNY--GLERVWAIGYMKSS 283 (915)
Q Consensus 216 ~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~--~~~~~--~~~~v~~i~~~~~~ 283 (915)
..+.+++..++... ..|..+.++..|++++..+.|..||.|+++.- .+. +.++. ..-.-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999998888666 78999999999999999999999999997621 111 11111 11233578999999
Q ss_pred CEEEEEecC-CeEEEe
Q 002496 284 RRIVIGYDE-GTIMVK 298 (915)
Q Consensus 284 ~~l~~~~~d-g~v~i~ 298 (915)
.+++.|+.. -.+++|
T Consensus 262 eYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIW 277 (405)
T ss_pred cEEEeccccceeEEEE
Confidence 999887743 345555
No 148
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.89 E-value=6.9e-20 Score=185.83 Aligned_cols=620 Identities=17% Similarity=0.191 Sum_probs=334.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE-cC-------CCCEEEEEEcCCeEEEEE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-HP-------TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-s~-------~~~~l~~~~~dg~i~iwd 127 (915)
|...|.|+.|+.+...+.++ +|..+.+|+--+...........+.+....+ -+ ....++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 45556799999887755555 4555556654343433333322222222111 11 223688999999999987
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
-.. ........|.+.+.+-.|+| ++.-|++++.||.|++|.- +|-...++.....+|.|++|.|+++. .+.+.
T Consensus 92 k~~--rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~-- 164 (737)
T KOG1524|consen 92 KSA--RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS-IVFCQ-- 164 (737)
T ss_pred ccc--hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc-eEEec--
Confidence 543 46677788999999999999 9999999999999999985 55444455556789999999999875 44433
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (915)
.+.+.|=.+.....+...+.|.+-|.++.|+|...++++|++|-..++||. .|+.+..-..+..+|++++|.|+ ..++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-ccee
Confidence 456777677766777788899999999999999999999999999999994 57877777888899999999999 5566
Q ss_pred EEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002496 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (915)
Q Consensus 288 ~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (915)
+++.+ +.++. ....+.+..++||+||..
T Consensus 243 v~S~n-t~R~~---------------------------------------------------~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 243 LWSYN-TARFS---------------------------------------------------SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eeeee-eeeec---------------------------------------------------CCCccceEEEEEcCCCce
Confidence 65532 22220 111224568999999999
Q ss_pred EEEEc-CCcEEEEEeecccccCccceeEEEEecCCcE-EEEecCCeEEEeccCccceeeeecCcccceee----cCcEEE
Q 002496 368 VVVCG-DGEYIIYTALAWRNRSFGSALEFVWSSDGEY-AVRESSSKIKIFSKNFQEKRSVRPTFSAERIY----GGTLLA 441 (915)
Q Consensus 368 lav~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~~g~~-l~~~~~~~i~v~~~~~~~~~~~~~~~s~~~i~----~g~~La 441 (915)
+++++ .|.+++-..-..+ |- .+.+ +.......|.+-|+.......+ .| |+++. +-.+|+
T Consensus 271 ~a~gt~~G~v~~A~~ieq~-----------l~-~~n~~~t~~~r~~I~vrdV~~~v~d~L--E~-p~rv~k~sL~Y~hLv 335 (737)
T KOG1524|consen 271 ATCGTSTGQLIVAYAIEQQ-----------LV-SGNLKATSKSRKSITVRDVATGVQDIL--EF-PQRVVKFSLGYGHLV 335 (737)
T ss_pred eeccccCceEEEeeeehhh-----------hh-hccceeEeeccceEEeehhhhhHHHHh--hC-ccceeeeeeceeEEE
Confidence 99988 5554432111110 00 0111 1111233455544322111000 11 11111 244777
Q ss_pred EeeCCeEEEEeccCCcEEEEEEccccEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEe
Q 002496 442 MCSNDFICFYDWAECRLIRRIDVTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHE 520 (915)
Q Consensus 442 ~~~~~~v~~~d~~~~~~i~~~~~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 520 (915)
+++...|++|.-........+++.-..+..-..+ +++.+.+...+.++.|..-.......+|. ..+.+..
T Consensus 336 vaTs~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~---------~~dlL~~ 406 (737)
T KOG1524|consen 336 VATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGS---------QIDLLTW 406 (737)
T ss_pred EEeccEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCc---------ccccccc
Confidence 7777788888755443333333321111111111 12222222233333322111100000000 1111111
Q ss_pred eeeeEEeeEEecCEEEEEcc-CCeE-EEEEC-------CEEeEEEecccc----eEEEEEEeeCCEEEEEecCCceEEEE
Q 002496 521 TNERVRTGLWVGDCFIYNNS-SWRL-NYCVG-------GEVTTMFHLDRP----MYLLGYLASQSRVYLIDKEFNVMGYT 587 (915)
Q Consensus 521 ~~~~i~~~~w~~~~~i~~~~-~~~l-~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~l~~~d~~~~~~~~~ 587 (915)
+ +.....|.+..... .+++ ++|-. ++...+.+-+.. ....| .+++..+.|+|+.+.++.-.
T Consensus 407 ---r--tlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG-~tnDrkVAFiDknrdl~Its 480 (737)
T KOG1524|consen 407 ---R--TLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKG-LTNDRKVAFIDKNRDLFITS 480 (737)
T ss_pred ---e--eeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccC-CCccceEEEEecCCcEEEEe
Confidence 1 11111222333222 2222 22221 111111111111 11122 25678899999998887654
Q ss_pred e-----cchHHHHHHHHHccCHHHHhhhcCCCCcchH------HHH---HHHHHhCCChhhhhhcccCccc-ee------
Q 002496 588 L-----LLSLIEYKTLVMRGDLERANEILPSIPKEHH------NSV---ARFLESRGMIEEAIEVATDPDY-RF------ 646 (915)
Q Consensus 588 ~-----~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~------~~~---~~~~~~~~~~~~al~~~~~~~~-~f------ 646 (915)
. ...++...+.+..-.+.+--.+|=.+....+ +.+ ...+.+.-.-..+-++.+.|.. .|
T Consensus 481 vKrfgkee~I~KiGTmVhtLawndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsFvgNqvt 560 (737)
T KOG1524|consen 481 VKRFGKEEEIYKIGTMVHTLAWNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSFVGNQVT 560 (737)
T ss_pred ehhcCchhhhhhhhhhhhhhhhccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeeeeccEEE
Confidence 4 2233333333322222221111100000000 000 0001111111111122222211 11
Q ss_pred -------eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhH---HHHHHHcCCcchhHHHHHhcCCHHHHHHH
Q 002496 647 -------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMA---EGCMKQAMDLSGLLLLYSSLGDAEGISKL 716 (915)
Q Consensus 647 -------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A---~~~y~~~~d~~~l~~l~~~~g~~~~~~~l 716 (915)
-+.+....+ ..+..+.....+|.+--+.|-.-++=.+= .-+-.+-++..-....|...++.++|..+
T Consensus 561 irrsdG~LlpisV~py---~~iL~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyi 637 (737)
T KOG1524|consen 561 IRRSDGALLPISVNPY---PEILHEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYI 637 (737)
T ss_pred EEeccCceEeeecccc---HHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHH
Confidence 111222222 22444445567787766666554443221 11112334444455668888888888888
Q ss_pred HHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhh
Q 002496 717 ASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (915)
Q Consensus 717 ~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~ 779 (915)
-.+.....+....++..+.+|+.-+|.-++++++....|+.+.-... .|+.+|.
T Consensus 638 n~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~---------nW~RALE 691 (737)
T KOG1524|consen 638 NHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMH---------NWRRALE 691 (737)
T ss_pred HHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhh---------hHHHHHH
Confidence 88887777777777777788999999999999999888887776543 3776665
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-20 Score=179.36 Aligned_cols=252 Identities=15% Similarity=0.245 Sum_probs=197.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC----ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMF 80 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~~dg~ 80 (915)
+...-.+|.+-|.++.|.+.|+.+|+++.|++|+|||..+. .+....+.|.+.|..+.|.+ =|+.+|+++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34445689999999999999999999999999999996543 34556778999999999976 4899999999999
Q ss_pred EEEEECC---------CCceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCC-----eeEEEEee-----
Q 002496 81 IRVYNYN---------TMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG-----WMCTQIFE----- 139 (915)
Q Consensus 81 i~vwd~~---------~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~----- 139 (915)
+.||.-. ......++......|+.+.|.|. |-.|++++.||.++||+.... +.+...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999752 11234456667788999999995 567899999999999986542 22222222
Q ss_pred --cCCccEEEEEEecC--CCCEEEEEECC-----CcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcC--EEEE
Q 002496 140 --GHSHYVMQVTFNPK--DTNTFASASLD-----RTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKP--YLIT 204 (915)
Q Consensus 140 --~~~~~i~~~~~~p~--~~~~l~~~~~d-----g~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~--~l~~ 204 (915)
.+..+..|+.|+|. ...+|++|+.+ +.+.||....+. .+..+.+|..+|+.++|.|+-... +|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 45667889999982 24578888765 478888765443 234567899999999999975433 5888
Q ss_pred EeCCCeEEEEECCCC--------------------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 205 GSDDHTAKVWDYQTK--------------------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|..|.+.|.||+||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 999998731 1345577899999999999999999999999999999843
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=4.7e-20 Score=196.55 Aligned_cols=264 Identities=12% Similarity=0.133 Sum_probs=198.4
Q ss_pred hhcccCCCCEEEEEEcCCCCeE-EEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Q 002496 9 RKLAQRSERVKSVDLHPSEPWI-LASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~l-a~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~vwd~ 86 (915)
..+.+| ..+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.|+|+++.++++ +.++.|++||+
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 444444 347789999999977 4566789999999999988777765444 5678999999987665 56899999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE-EEECC
Q 002496 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLD 164 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~d 164 (915)
.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..++.. ..... ....+.++.|+| ++..++ ++..+
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~ 178 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTA-DGKELWVSSEIG 178 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECC-CCCEEEEEcCCC
Confidence 98887777753 33468899999999999988765 567789887733 33222 223457789999 677665 44569
Q ss_pred CcEEEEECCCCCCceEEecCC-------CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002496 165 RTIKIWNLGSPDPNFTLDAHQ-------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 165 g~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
+.|++||+.+++....+..+. .....+.|+|+++. .+++.+.++.+.+||.++++.+..+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 999999999887665554221 12346788988873 23444567789999999888776554 4457899999
Q ss_pred eCCCCEEEEE-EcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002496 238 HPELPIIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 238 ~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
+|+|++|+++ +.+|.|++||+.+++.+..+..+ ...+.++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999886 46899999999999998888876 5558888765
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.9e-22 Score=195.90 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=193.9
Q ss_pred EEEEEEcC-------CCCeEEEEEcCCcEEEEECCCCce---------------------eEEEEecCCCEEEEEEeCC-
Q 002496 18 VKSVDLHP-------SEPWILASLYSGTVCIWNYQSQTM---------------------AKSFEVTELPVRSAKFVAR- 68 (915)
Q Consensus 18 V~~v~~sp-------~~~~la~~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~l~~s~~- 68 (915)
..|++|.. .|+++|+|+.+..|.|||+.-... -..-.+|+..|.+++|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999752110 0112358888889999875
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEE
Q 002496 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 69 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (915)
.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+|.. .+|++|+.|+++.+.|.+........+ ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 4578899999999999999999999999999999999999964 578899999999999998431222222 23467999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE--EEE
Q 002496 148 VTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQT 224 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~ 224 (915)
++|+|...+.+++++.||+|+-+|+++. ++++++..|..+|.++++++...+ ++++++.++.|++|++....+ +..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCCccccc
Confidence 9999988899999999999999999886 899999999999999999887655 899999999999999874332 222
Q ss_pred ecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCccee
Q 002496 225 LEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
-...-+...|.++.|+-. +++.|+..+.+++||+.+...+
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 222233467778888765 6777888889999998877643
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=203.00 Aligned_cols=240 Identities=17% Similarity=0.252 Sum_probs=206.5
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee
Q 002496 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133 (915)
Q Consensus 55 ~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 133 (915)
.|...-+.++|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++... .++++|+.+++|.+|.+.++ .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~-~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSG-E 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCC-C
Confidence 57778899999999999999999999999998765 44455555777888887754 48999999999999999987 4
Q ss_pred EEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002496 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 134 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
....+....-++.+++++. +++.++.|+.|-.|++.++......+.+.+|..+|.++.|+|.+. +|++.+.||.|++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEEecCceEEE
Confidence 4445556678899999998 899999999999999999999999999999999999999999988 8999999999999
Q ss_pred EECCCCcEEEEecCC--------ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC--CccEEEEEEecCC
Q 002496 214 WDYQTKSCVQTLEGH--------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKSS 283 (915)
Q Consensus 214 wd~~~~~~~~~~~~~--------~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~ 283 (915)
||++++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..++.....+... ...+..+.|+|.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999998876665431 334678999999888888888999999999999887776643 3448999999999
Q ss_pred CEEEEEecCCeEEEecC
Q 002496 284 RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 284 ~~l~~~~~dg~v~i~~~ 300 (915)
++||+++.+|.|.+|..
T Consensus 245 ~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNV 261 (933)
T ss_pred cEEeeeccCCcEEEEec
Confidence 99999999999999843
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.6e-21 Score=186.60 Aligned_cols=247 Identities=20% Similarity=0.295 Sum_probs=191.9
Q ss_pred hhhhcccCCCCEEEEEEcCCC--CeEEEEEcCCcEEEEECCC----------------CceeEEEEecCCCEEEEEEeCC
Q 002496 7 IKRKLAQRSERVKSVDLHPSE--PWILASLYSGTVCIWNYQS----------------QTMAKSFEVTELPVRSAKFVAR 68 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~--~~la~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~s~~ 68 (915)
+.....+|.+.|..+.-++-+ .+.|+-+..|.|.|||+.. .+.+.++.+|.+.=..++|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 344556788888888877765 3555556799999999743 2567778889988999999994
Q ss_pred C-CEEEEEeCCCeEEEEECCCCcee---EEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCe-eEEEEeecCC
Q 002496 69 K-QWVVAGADDMFIRVYNYNTMDKV---KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHS 142 (915)
Q Consensus 69 ~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 142 (915)
. ..|++|..-+.|++|...+|... ..+.+|+..|..++|||.. ..|++||.||+|+|||++.+. ........|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 3 34888888899999999887653 3356799999999999964 578899999999999999872 2333447899
Q ss_pred ccEEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002496 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 143 ~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+.|..+.|+. ...+|++|+.||+++|||+++ ++++..++.|..+|+++.|+|.... .|++++.|.+|.+||+..-
T Consensus 303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEeecc
Confidence 9999999998 555999999999999999975 5677899999999999999998765 7889999999999998531
Q ss_pred cE----------------EEEecCC--ccCeEEEEEeCCCC-EEEEEEcCCcEEEE
Q 002496 220 SC----------------VQTLEGH--THNVSAVCFHPELP-IIITGSEDGTVRIW 256 (915)
Q Consensus 220 ~~----------------~~~~~~~--~~~i~~i~~~~~~~-~l~~~~~dg~v~iw 256 (915)
.- .+-+--| ...+..+.|+++-+ ++++.+.|| +.||
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 10 1111112 34577889998765 777777787 4444
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.5e-21 Score=186.62 Aligned_cols=241 Identities=20% Similarity=0.325 Sum_probs=184.2
Q ss_pred ecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC----------------CceeEEEecCCCCEEEEEEcCC-CCEEE
Q 002496 55 VTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT----------------MDKVKVFEAHTDYIRCVAVHPT-LPYVL 115 (915)
Q Consensus 55 ~~~~~v~~l~~s~~~--~~l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~-~~~l~ 115 (915)
.|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+.+.++.+|.+.=..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 356667766666654 4555667799999999742 3456778899988899999993 23588
Q ss_pred EEEcCCeEEEEECCCCee-E-EEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEE
Q 002496 116 SSSDDMLIKLWDWEKGWM-C-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCV 191 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~-~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~ 191 (915)
+|.--+.|++|...++.- . ...+.+|...|-.++|+|...+.|++||.||+|+|||++++. .....+.|.+.|+.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 888888999999887622 1 234667999999999999889999999999999999999873 333447899999999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCC---CcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcce----
Q 002496 192 DYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL---- 263 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~---- 263 (915)
+|+..-. +|++|++||+++|||+++ ++++..++-|..+|++|.|+|.. ..|++++.|.+|.|||+..-.-
T Consensus 309 SWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 309 SWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9986655 899999999999999986 66889999999999999999954 5788889999999999863211
Q ss_pred --------------eeeeecCCccEEEEEEecCCC-EEEEEecCCeEEE
Q 002496 264 --------------ENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMV 297 (915)
Q Consensus 264 --------------~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~i 297 (915)
+..+......+..+.|+++-. ++++.+.+|.-.+
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 001111224566788888743 5555666665544
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.5e-21 Score=193.32 Aligned_cols=262 Identities=13% Similarity=0.189 Sum_probs=211.4
Q ss_pred CEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002496 17 RVKSVDLHPSEPWILASL--YSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~--~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
.+.++.|+.... |++++ .|..|++|. +.|+ ....-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 389999998765 55444 477899997 4443 2111111222334555555568999999999999999997667
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC-CccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
.+.++.|.+.|+++.++....+|++++..|.|.|..+.++ .....+... ...|.-+.|+|....+|.+++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7788999999999999999999999999999999999987 333444433 45566899999777788899999999999
Q ss_pred ECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 171 NLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
|..+..++..+ ..|..+...|+|+|.... +|++.+.|..|.+||.+.......+. ...+.++++|+++|.+|++|+.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 99888887665 568899999999998765 88999999999999998766655554 5678999999999999999999
Q ss_pred CCcEEEEeCCCc-ceeeeeecCCccEEEEEEecCC
Q 002496 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
.|.|..||++.. .++.++..|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999864 4788888898999999998875
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.5e-20 Score=175.87 Aligned_cols=246 Identities=18% Similarity=0.332 Sum_probs=195.1
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEE
Q 002496 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 54 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd 127 (915)
.+|..-|.++.|.+-|+.+|+|+.|++|+|||.+.. .+....+.|.+.|..+.|-+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357888999999999999999999999999996432 34556779999999999976 588999999999999996
Q ss_pred CC--------CCeeEEEEeecCCccEEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCc------eEEe-------cCC
Q 002496 128 WE--------KGWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN------FTLD-------AHQ 185 (915)
Q Consensus 128 ~~--------~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~v~d~~~~~~~------~~~~-------~~~ 185 (915)
=. ..+....++......|+.+.|.|. -+-.+++++.||.++||+.-..-.. ..++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 41 124555667777889999999993 3667899999999999987543221 1111 355
Q ss_pred CCeeEEEEEeCC-CcCEEEEEeCC-----CeEEEEECCCCc----EEEEecCCccCeEEEEEeCCC----CEEEEEEcCC
Q 002496 186 KGVNCVDYFTGG-DKPYLITGSDD-----HTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDG 251 (915)
Q Consensus 186 ~~v~~~~~~~~~-~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~----~~l~~~~~dg 251 (915)
.+..|+.|+|.. ..++|++|+.+ +.++||....+. .+.++.+|..+|+.++|.|+- ..|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899999764 34477777766 578899775432 455677899999999999964 3899999999
Q ss_pred cEEEEeCCCc--------------------ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002496 252 TVRIWHATTY--------------------RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 252 ~v~iwd~~~~--------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~ 300 (915)
|+||++... +.+..+..|.+.||.+.|.-.|..|++.++||.|++|..
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999997631 134557788899999999999999999999999999843
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.9e-20 Score=187.06 Aligned_cols=253 Identities=19% Similarity=0.278 Sum_probs=192.3
Q ss_pred EECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcCCC-CEE
Q 002496 42 WNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTL-PYV 114 (915)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~-~~l 114 (915)
+|+.+.........+..+|++++|+|.. +.+++|+..|+|-+||+.+. ..+..+..|..+|.+|.|+|.+ ..+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 3444445556677889999999999965 57888999999999999532 2356677899999999999954 578
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeec--CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEE
Q 002496 115 LSSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCV 191 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~ 191 (915)
++.|.||+|++-|++++ .....+.. ....+.++.|+. +...++.+..=|...+||++++.. ...+..|...|+.+
T Consensus 251 ~ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeccCceeeeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 99999999999999876 22222222 445677788887 555566666666999999998765 55667788899999
Q ss_pred EEEeCCCcCEEEEEeCCCeEEEEECCCCc----EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC----Ccce
Q 002496 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRL 263 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~----~~~~ 263 (915)
+++|-... ++++++.|++.+|||++.-. ++...-.|...|.+..|||.+-.|++.+.|..|+|||.. ...+
T Consensus 329 ~~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 329 ALNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred ecCCCCch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 99998765 89999999999999998622 233444589999999999998889999999999999973 2223
Q ss_pred eeeeecCCc-----cEEEEEEecCCCEEEEEecCCeEEE
Q 002496 264 ENTLNYGLE-----RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 264 ~~~~~~~~~-----~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
..++..... ......|.|+..++++|..-..|-|
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 333332211 2345789999999998887666665
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=188.46 Aligned_cols=275 Identities=19% Similarity=0.276 Sum_probs=208.0
Q ss_pred EEEEcCCCCeEEEEEcC---Cc--EEEEECCCCceeEEEEec----CCCEEEEEEeC-------CCCEEEEEeCCCeEEE
Q 002496 20 SVDLHPSEPWILASLYS---GT--VCIWNYQSQTMAKSFEVT----ELPVRSAKFVA-------RKQWVVAGADDMFIRV 83 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~d---g~--v~iwd~~~~~~~~~~~~~----~~~v~~l~~s~-------~~~~l~~~~~dg~i~v 83 (915)
.+..-|+.++|+++-.. .. |+||+- ... ..+-.| .....|++|.. .|+++|+|+-+..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~--~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNE--EEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcC--CCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45566777777777542 22 555553 221 112222 23346777753 3689999999999999
Q ss_pred EECCCCce---------------------eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecC
Q 002496 84 YNYNTMDK---------------------VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 84 wd~~~~~~---------------------~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
||+.-... -..-.+|++.|.++.|+..- +.|++||.|.+|++||+.++ ++..++..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhhc
Confidence 99852110 11123688889899998753 57889999999999999999 888899999
Q ss_pred CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-Cc
Q 002496 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KS 220 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 220 (915)
.+.|.++.|+|..+..|++|+.|++|.+.|.+........-...+.|-.+.|.|.... .++++..||+|+-+|+|. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCC
Confidence 9999999999999999999999999999999854333222234678899999998765 788899999999999997 48
Q ss_pred EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc--eeeeeecCCccEEEEEEecCC-CEEEEEecCCeEE
Q 002496 221 CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIM 296 (915)
Q Consensus 221 ~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~ 296 (915)
++.+++.|.++|+++++++.-+ ++++++.|+.|++|++..-+ .+.......++..|.++.|+- -.+++|+..+.++
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 9999999999999999998665 78889999999999976433 333333344567888888875 4677788888888
Q ss_pred Eec
Q 002496 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
+|.
T Consensus 445 vwd 447 (463)
T KOG0270|consen 445 VWD 447 (463)
T ss_pred Eee
Confidence 863
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=178.74 Aligned_cols=272 Identities=19% Similarity=0.291 Sum_probs=214.3
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCC------------ceeEEEEe-cCCCEEEEEEe-------CCCCEEEEEeC
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQ------------TMAKSFEV-TELPVRSAKFV-------ARKQWVVAGAD 77 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~~~------------~~~~~~~~-~~~~v~~l~~s-------~~~~~l~~~~~ 77 (915)
...+.|||||..|++-+.|..+++|++... +...++.. ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999997531 11112222 24467777775 57789999999
Q ss_pred CCeEEEEECCCCceeEEEec--CCC---CEEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCeeEEE--E----eecCCccE
Q 002496 78 DMFIRVYNYNTMDKVKVFEA--HTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDW-EKGWMCTQ--I----FEGHSHYV 145 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~--~~~---~i~~l~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~--~----~~~~~~~i 145 (915)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|+.|.. ..|+++|+ +.++.+.. + ..+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998777653 333 3468999999999887754 68999999 45533221 1 12346778
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCC-CcEEE
Q 002496 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-KSCVQ 223 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~ 223 (915)
.+++|+|.+...+++|+...++-+|.-....+...+-+|.++|+.++|.++|++ |.+|. .+..|..||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~--lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNK--LFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCe--ecccccCCCeEEEEeehhccchhh
Confidence 999999988889999999999999998899999999999999999999999984 66665 478899999986 44566
Q ss_pred EecCCcc-CeE--EEEEeCCCCEEEEEEcCCcEEEEeCCC-cceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002496 224 TLEGHTH-NVS--AVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 224 ~~~~~~~-~i~--~i~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (915)
.+..|.. .-. -....|.+++|++|+.||.|++||+.+ +..+..+..+...+..++++|--.++++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 6666554 222 345678999999999999999999998 66677888888899999999998777776543
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=2.3e-20 Score=178.58 Aligned_cols=282 Identities=21% Similarity=0.402 Sum_probs=218.1
Q ss_pred hcccCCCCEEEEEEcC----CCC-eEEEEEcCCcEEEEECCCCceeEEEE-----ecCCCEEEEEEeCC----CCEEEEE
Q 002496 10 KLAQRSERVKSVDLHP----SEP-WILASLYSGTVCIWNYQSQTMAKSFE-----VTELPVRSAKFVAR----KQWVVAG 75 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp----~~~-~la~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~~----~~~l~~~ 75 (915)
....|..+|..++|++ +.. .+|+.+ .+.+.||.....--++.++ .|+.....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999986 333 455555 5689999987654333333 25667888899765 4579999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEee---cCCccEEEEEEe
Q 002496 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFN 151 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~ 151 (915)
+.-|.|+|.|+.+++....+.+|...|..+.++|+. ++++++|.|..|++|++++. .+..++. +|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEc
Confidence 999999999999999999999999999999999976 57889999999999999998 7777764 699999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC---------------------------ce-EEecCCCCeeEEEEEeCCCcCEEE
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSPDP---------------------------NF-TLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~~~---------------------------~~-~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
+ ++..|++++.|.+|++|++...+. .+ +...|...|.|+.|.- + +++
T Consensus 191 ~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d--~il 265 (385)
T KOG1034|consen 191 L-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D--FIL 265 (385)
T ss_pred C-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h--hee
Confidence 9 888999999999999999973210 00 1234666777777753 3 799
Q ss_pred EEeCCCeEEEEEC-CCCc-------------EEEEecCCccCeEEE--EEeCCCCEEEEEEcCCcEEEEeCCCccee--e
Q 002496 204 TGSDDHTAKVWDY-QTKS-------------CVQTLEGHTHNVSAV--CFHPELPIIITGSEDGTVRIWHATTYRLE--N 265 (915)
Q Consensus 204 ~~~~dg~i~iwd~-~~~~-------------~~~~~~~~~~~i~~i--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~ 265 (915)
+-+.++.|..|.. +-++ .+..+.-....|+-+ +|.|-++.|+.|...|.|.+||+.+.... .
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9999999999987 2111 123333344455555 45677889999999999999999876652 2
Q ss_pred ee--ecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 266 TL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 266 ~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
++ ......|...+|+.||..|+..++|++|.-|
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 22 2234679999999999999999999999765
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.4e-20 Score=190.77 Aligned_cols=244 Identities=20% Similarity=0.279 Sum_probs=197.5
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCC------
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDM------ 121 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg------ 121 (915)
-..+.+|.+.|+|+...|.|.+|++|+.||+|+||.+.||.++..+.- .+.|.|++|+|.+. .|+++-...
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 345778999999999999999999999999999999999999998874 56899999999765 334333222
Q ss_pred --------------------------eEEEEECCC---CeeEEEEeecCCccEEEEEEecCCCCEEEEEECC---CcEEE
Q 002496 122 --------------------------LIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD---RTIKI 169 (915)
Q Consensus 122 --------------------------~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d---g~i~v 169 (915)
.+..|.-.. ...-......|...|.++.|+. .|.+|++...+ ..|.|
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEE
Confidence 222332221 1111234446888999999998 89999987654 56889
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
.++........|....+.|.++.|+|... +|++++ ...|+|||+.....++.+......|++++++|.|.-|+.|+.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99987776666766778899999999876 677666 468999999887777777777788999999999999999999
Q ss_pred CCcEEEEeCCCc-ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
|+.+..||+.-. +..+++..|...+++++|++.-.++++|++||+++++
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999998754 4677888999999999999999999999999999984
No 162
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.1e-18 Score=183.92 Aligned_cols=407 Identities=16% Similarity=0.228 Sum_probs=270.3
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECC
Q 002496 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYN 87 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~~~dg~i~vwd~~ 87 (915)
+.|....-..-.||+|+++++... +..|.||...+|.++..+..|..++..+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444444556899999887765 66899999999999999999999999999988654 67789999999999998
Q ss_pred CCceeEEEecCCCC----------------------------------------------------------EEEEEEcC
Q 002496 88 TMDKVKVFEAHTDY----------------------------------------------------------IRCVAVHP 109 (915)
Q Consensus 88 ~~~~~~~~~~~~~~----------------------------------------------------------i~~l~~s~ 109 (915)
.+..++++..+... -.++..++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 87777666532110 01222233
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeeEE---EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC----CCCceEEe
Q 002496 110 TLPYVLSSSDDMLIKLWDWEKGWMCT---QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----PDPNFTLD 182 (915)
Q Consensus 110 ~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~ 182 (915)
.|.+...... ..+.+|+........ ..-..|...+++.+++| .++++++|..||.|.+|.--. ......+.
T Consensus 171 ~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 171 SGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 3333222222 346666666532111 11124666689999999 999999999999999996433 12345677
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc
Q 002496 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
.|...|++++|+++|. +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|+.|.+....+..
T Consensus 249 WH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ecccccceeEEecCCc--eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 8999999999999998 89999999999999999988 44455577899999999999999999999999999876655
Q ss_pred eeeeeecC-----------CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecc
Q 002496 263 LENTLNYG-----------LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (915)
Q Consensus 263 ~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 331 (915)
...++.+. .+-.+.++++|..+.++..+..|.|.++..... ..+..+.+.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td----------------~~i~~~~v~--- 386 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD----------------STIYKLQVC--- 386 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc----------------ceeeeEEEE---
Confidence 44333322 233567889998888888889999988521111 111111110
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---------CCc--EEEEEeec----cc------ccCcc
Q 002496 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---------DGE--YIIYTALA----WR------NRSFG 390 (915)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---------~~~--~~i~~~~~----~~------~~~~~ 390 (915)
..+..+|.. .....++.++.+.+|.++++.. +|+ +.+|.... |. +.+-.
T Consensus 387 -~~n~~~~~~---------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 387 -DENYSDGDV---------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred -eecccCCcc---------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 011233331 2223456777777788887653 222 33442211 11 11112
Q ss_pred ceeEEEEe-c-CCcEEEEec-CCeEEEeccCcc------c-------------eeeeecCcccceeecCcEEEEeeCCeE
Q 002496 391 SALEFVWS-S-DGEYAVRES-SSKIKIFSKNFQ------E-------------KRSVRPTFSAERIYGGTLLAMCSNDFI 448 (915)
Q Consensus 391 ~~~~~~~s-~-~g~~l~~~~-~~~i~v~~~~~~------~-------------~~~~~~~~s~~~i~~g~~La~~~~~~v 448 (915)
.+...++. + ....+++.+ ++.++||-.+.. . .....++|+.| |.+|+++.+++|
T Consensus 457 ~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~s~~~~I 532 (792)
T KOG1963|consen 457 AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAVSFDDTI 532 (792)
T ss_pred eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC----CcEEEEecCCEE
Confidence 22333333 2 222555654 899999975211 0 01111267777 899999999999
Q ss_pred EEEeccCC
Q 002496 449 CFYDWAEC 456 (915)
Q Consensus 449 ~~~d~~~~ 456 (915)
.+||..+.
T Consensus 533 tiwd~~~~ 540 (792)
T KOG1963|consen 533 TIWDYDTK 540 (792)
T ss_pred EEecCCCh
Confidence 99999884
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.5e-22 Score=219.01 Aligned_cols=280 Identities=17% Similarity=0.288 Sum_probs=221.1
Q ss_pred CEEEEEEcCCCC-eEEEEE----------cCCcEEEEECC--CCc----eeEEEEecCCCEEEEEEeCCCCE----EEEE
Q 002496 17 RVKSVDLHPSEP-WILASL----------YSGTVCIWNYQ--SQT----MAKSFEVTELPVRSAKFVARKQW----VVAG 75 (915)
Q Consensus 17 ~V~~v~~sp~~~-~la~~~----------~dg~v~iwd~~--~~~----~~~~~~~~~~~v~~l~~s~~~~~----l~~~ 75 (915)
+--.++|+|+++ ++|+|. .+.++-||.+. +.. .+..+. ...+.+.++|.+.|.. |+.|
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc
Confidence 345689999997 666653 24455666543 222 222222 3456789999998876 8888
Q ss_pred eCCCeEEEEECCCC------ceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEE-eecCCccEEE
Q 002496 76 ADDMFIRVYNYNTM------DKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQ 147 (915)
Q Consensus 76 ~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~ 147 (915)
..||.|.+||...- ..+.....|.+.|..+.|++.+. .|++|+.||.|.|||+.+....... -......|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 89999999997652 23456678999999999999765 9999999999999999875322222 1124567999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC--CeeEEEEEeCCCcCEEEEEeCC---CeEEEEECCC-CcE
Q 002496 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQT-KSC 221 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~ 221 (915)
++|+.+....|++++.+|++.|||++..+++..+..+.. .+..+.|+|+... .+++++.| -.|.+||+|. ..+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCc
Confidence 999998888999999999999999999988887765544 4678999999876 45555443 4699999986 457
Q ss_pred EEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEEecCCeEEEe
Q 002496 222 VQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVK 298 (915)
Q Consensus 222 ~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~i~ 298 (915)
++.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+|.|.|+
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 78888999999999999977 7999999999999999999999999998888999999999876 78889999999884
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=192.34 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=204.0
Q ss_pred EEEEcC---CCCeEEEEEcCCcEEEEECCCCce------eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002496 20 SVDLHP---SEPWILASLYSGTVCIWNYQSQTM------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 20 ~v~~sp---~~~~la~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
+..|++ ....||++..+|.|.++|...... ++.+..|...|..+.|.|....|++++.|.++++||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 334789999999999999766433 24556799999999999977789999999999999999988
Q ss_pred eeEE--EecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCee------EEE--------------------EeecC
Q 002496 91 KVKV--FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM------CTQ--------------------IFEGH 141 (915)
Q Consensus 91 ~~~~--~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~--------------------~~~~~ 141 (915)
.+.. +.+|...+.+++|.|+++ .+++|+.||.|.|||++-... +.. ....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999765 577999999999999864310 000 01112
Q ss_pred Ccc----EEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCceEE--------ecC---CCCeeEEEEEeCCCcCEEEEE
Q 002496 142 SHY----VMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL--------DAH---QKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 142 ~~~----i~~~~~~p~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~ 205 (915)
... |+.+.|- |...|++++. |+.|+|||++........ ..+ ..++.++.. +..+.++++.
T Consensus 214 s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssGt~L~As 289 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFAS 289 (720)
T ss_pred cCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCCCeEEEE
Confidence 223 4445444 7889999888 999999999876433221 122 233445544 4444488888
Q ss_pred eCCCeEEEEECCCCc--EEEEecCCccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEEe
Q 002496 206 SDDHTAKVWDYQTKS--CVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (915)
Q Consensus 206 ~~dg~i~iwd~~~~~--~~~~~~~~~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 280 (915)
+.|+.|++|++.+-. ++..+.++... -..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 889999999997532 34444443221 1233578999999999999999999998766 345667788889999998
Q ss_pred cCC-CEEEEEecCCeEEEecC
Q 002496 281 KSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 281 ~~~-~~l~~~~~dg~v~i~~~ 300 (915)
|.. .-++++++|-.+.+|..
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cccCCCceeeccCcceEEEec
Confidence 862 34666799999999853
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=5.7e-19 Score=174.07 Aligned_cols=317 Identities=18% Similarity=0.308 Sum_probs=208.7
Q ss_pred CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---------ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002496 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
..++.++.|.+.+.+.+++|+.|..|++|-+..+.+ ...+..|...|+++.|+|+|+ ++++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 356899999986667999999999999998865432 234567999999999999998 899999999999
Q ss_pred EEECC--------C--------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEE
Q 002496 213 VWDYQ--------T--------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 213 iwd~~--------~--------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|-.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..|+....+..|...+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 1234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002496 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|.|-++++++-+.|...+.......++... ... .+... .. ...++-.......-++...+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~--------~~~-~~m~~----~~----~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR--------HGL-DIMPA----KA----FNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeee--------eee-eEeee----cc----cCCCCcceeeeeecCchhhhh
Confidence 99999999999987776443321111111100 000 00000 00 011111111122224445567
Q ss_pred ceEEECCCCCEEEEEc-----CCcEEEEEeecccccC-ccceeEEEEecC-Cc-EEEEecCCeEEEeccCccceeeeecC
Q 002496 357 QSLKHNPNGRFVVVCG-----DGEYIIYTALAWRNRS-FGSALEFVWSSD-GE-YAVRESSSKIKIFSKNFQEKRSVRPT 428 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-----~~~~~i~~~~~~~~~~-~~~~~~~~~s~~-g~-~l~~~~~~~i~v~~~~~~~~~~~~~~ 428 (915)
+.++|+|||.+|++.. .+.+..........+. ..++.. .|. ++ .+++... -| .|.+ ........-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~---lp~~~k~~lavr~~-pV-y~el--rp~~~~~~~ 306 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR---LPSPKKPALAVRFS-PV-YYEL--RPLSSEKFL 306 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee---cCCCCcceEEEEee-ee-EEEe--ccccccccc
Confidence 8899999999988653 3333222111111110 011111 111 11 1111111 01 1100 000000000
Q ss_pred c-ccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE----ccccEEEEcCCCCEEEEEeCCeEEE
Q 002496 429 F-SAERIYGGTLLAMCSNDFICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDTSFYI 488 (915)
Q Consensus 429 ~-s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~~~~~~ 488 (915)
| -| .+-.+|+++.+.|.+||.++..++.... ..++.++||+||..+++.+-|+.+-
T Consensus 307 ~~lp----yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 307 FVLP----YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccc----cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 0 12 2567889999999999999988887766 4899999999999999999999884
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.9e-21 Score=194.17 Aligned_cols=264 Identities=21% Similarity=0.299 Sum_probs=202.3
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC--------CceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002496 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------QTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 5 ~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 76 (915)
+.++.++..|.+.|+.++|+|..+.|++++.+|.+.+|+++. .+.+.+|.+|.+||.|++..+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345567888999999999999999999999999999999932 256788999999999999999999999999
Q ss_pred CCCeEEEEECCCC----------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEE
Q 002496 77 DDMFIRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM 146 (915)
Q Consensus 77 ~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 146 (915)
.||+|+.|++... .....+.+|.+.++.+++|+...+|++|+.||++++|+......+........+...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 9999999965421 234567799999999999999999999999999999998765332222122234445
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec-------CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002496 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
++.+........++...-+.-.++++........+.. ....++.+.++|..+ +.+++..|+.|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC--eeEecccCCceeccccccc
Confidence 6666432222333333233333333333333333321 124567788888875 8999999999999999999
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002496 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 220 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
..+.....|...++++++.|+|.+|++|+.||.+++|.+....++.....|
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999999999999999999999998766655544433
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.2e-20 Score=183.99 Aligned_cols=263 Identities=17% Similarity=0.271 Sum_probs=206.4
Q ss_pred EEEcCCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEE--eCCCeEEEEECCC--CceeEEEecCCCCEEEE
Q 002496 32 ASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAG--ADDMFIRVYNYNT--MDKVKVFEAHTDYIRCV 105 (915)
Q Consensus 32 ~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~--~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l 105 (915)
+++....++|||....+....+..|. ..+.++.|+.+.. |+++ +.|..+++|.-.. ++....-+...+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33445579999998776666655443 3488999987765 4444 4578899996432 11222212223345566
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC-
Q 002496 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH- 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~- 184 (915)
+......++++|+..+.|+|||++.. .+.+.+.+|...|+++.++- ...+|++++..|.|.+..+.++.....+...
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 66666689999999999999999965 78888999999999999998 7789999999999999999988777777644
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcc
Q 002496 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
...|.-+.|++.... +|.+++++|.|.+||+....++..+ ..|..+...|||+|... +|++.+.|..|.+||....+
T Consensus 164 gqsvRll~ys~skr~-lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRF-LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCeEEEeecccccce-eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 344568899988765 7889999999999999877766554 46889999999999654 77889999999999999777
Q ss_pred eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
....+.+. .+..+++|+++|.+|++|+..|.++.+.
T Consensus 243 s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 243 STDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccceeeec-CCcceeeecCCceEEEeecCCceEEEEe
Confidence 77776655 6889999999999999999999998864
No 168
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=172.97 Aligned_cols=383 Identities=14% Similarity=0.196 Sum_probs=239.3
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeEEEecC
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
-++|||+|+++|+.+.- .+.|-|..+-+..+.+.. -..|.-+.|..|.-+++++ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999999854 888999888776655543 3457789999999887765 56889999999988888888888
Q ss_pred CCCEEEEEEcCCCCEE-EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC---C
Q 002496 99 TDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~---~ 174 (915)
..++.+++|||+|+.| .+...+-.|.+|.+.+.... .+......+..++|+| ++++.+.++.-...-.+.+. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 8899999999999655 46667899999999886222 2222234468899999 88888887753211111111 1
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
-.....+....-..+.+.|+|+|+ .+ .+||.--.-.+.... -.-.+..++|+|.+++|++|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~l---------aVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--WL---------AVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--EE---------EEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhh
Confidence 122333444455567899999987 34 455532111121221 224578899999999999999999998
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe-cCCeEE-EecCCCcceeEecCCCcEEEEeeCceEEEEeeeccc
Q 002496 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTIM-VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~v~-i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 332 (915)
+.+--+.+. -+.++-.++ .|.+.. +...... .+
T Consensus 236 vlnh~tWk~------------------f~eflhl~s~~dp~~~~~~ke~~~----------~~----------------- 270 (447)
T KOG4497|consen 236 VLNHFTWKP------------------FGEFLHLCSYHDPTLHLLEKETFS----------IV----------------- 270 (447)
T ss_pred hhceeeeee------------------hhhhccchhccCchhhhhhhhhcc----------hh-----------------
Confidence 876444433 333222211 111111 1000000 00
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEE----------Ee--ecccccCccceeEEEEecC
Q 002496 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIY----------TA--LAWRNRSFGSALEFVWSSD 400 (915)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~----------~~--~~~~~~~~~~~~~~~~s~~ 400 (915)
.....+++|.|..--.-.+ ...-.+| .. ...+......+-.++||+|
T Consensus 271 --------------------ql~~~cLsf~p~~~~a~~~-~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D 329 (447)
T KOG4497|consen 271 --------------------QLLHHCLSFTPTDLEAHIW-EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD 329 (447)
T ss_pred --------------------hhcccccccCCCccccCcc-ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC
Confidence 0000112222211000000 0000011 01 1122333455677899999
Q ss_pred CcEEEEecC---CeEEEeccCccceee-------ee-cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEE-c-cc
Q 002496 401 GEYAVRESS---SKIKIFSKNFQEKRS-------VR-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID-V-TV 466 (915)
Q Consensus 401 g~~l~~~~~---~~i~v~~~~~~~~~~-------~~-~~~s~~~i~~g~~La~~~~~-~v~~~d~~~~~~i~~~~-~-~i 466 (915)
..|+++..| +.+-+||+....... ++ ..+.|. ...|++++.. .+++|.......+.... | .|
T Consensus 330 s~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~----~prL~vctg~srLY~W~psg~~~V~vP~~GF~i 405 (447)
T KOG4497|consen 330 STYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNI 405 (447)
T ss_pred ceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC----CceEEEEcCCceEEEEcCCCceEEecCCCCcee
Confidence 999999885 578999976443222 11 155665 6777777777 99999877655555433 2 79
Q ss_pred cEEEEcCCCCEEEEEeCCeEEEE
Q 002496 467 KNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 467 ~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
..+.|..+|+.++..++|.+++-
T Consensus 406 ~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred eeEEecCCCcEEEEEcCCceEEE
Confidence 99999999999999999988863
No 169
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=6.6e-17 Score=182.19 Aligned_cols=285 Identities=28% Similarity=0.486 Sum_probs=231.6
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-eeEEEEecCC-CEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVTEL-PVRSAKF-VARKQ-WVVAGAD-DMFIRVY 84 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~-~~~~~~~~~~-~v~~l~~-s~~~~-~l~~~~~-dg~i~vw 84 (915)
.+..|...+.++.+++.+..++.++.++.+.+|+...+. .+..+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999988886 6677776443 7787877 88887 5555444 9999999
Q ss_pred ECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCC-EEEEE
Q 002496 85 NYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASA 161 (915)
Q Consensus 85 d~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~~~ 161 (915)
+..+ ......+..|...|..++|+|++..+++++. |+.+++|+...+ .....+.+|...+.++.|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9988 7888889999999999999999998888885 999999999985 56677777999999999998 665 55555
Q ss_pred ECCCcEEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeC
Q 002496 162 SLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 162 ~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~ 239 (915)
+.|+.|++||...+.... .+..|.... ...|++++. ++++++.++.+++|+...... +..+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 999999999988766666 577777765 447888884 788999999999999987664 455567888999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcceeeeee--cCCccEEEEEEecCCCEEEEE-ecCCeEEEec
Q 002496 240 ELPIIITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIG-YDEGTIMVKI 299 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~-~~dg~v~i~~ 299 (915)
++..+++++.|+.+++|+..+........ .+...+..+.|.+++..++.+ ..++.+.+|.
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 88888889999899999988887666665 565568899983332556655 5667776653
No 170
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-17 Score=180.73 Aligned_cols=417 Identities=16% Similarity=0.220 Sum_probs=274.6
Q ss_pred hhhhhcccCCCCEEEEEEcCCCC---eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEE-----------------
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF----------------- 65 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~---~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~----------------- 65 (915)
+..+.|.+|..+++.+.+.|... ++.+++.+|.|++||...+.+++++..+- ++..+.+
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~ 126 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED 126 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc
Confidence 45668999999999999998654 56788899999999999998888776322 2222221
Q ss_pred ------------------------------------------eCCCCEEEEEeCCCeEEEEECCCCceeEE----EecCC
Q 002496 66 ------------------------------------------VARKQWVVAGADDMFIRVYNYNTMDKVKV----FEAHT 99 (915)
Q Consensus 66 ------------------------------------------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~ 99 (915)
++.|.+... ..+..+.+|+..++..... -..|.
T Consensus 127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred ceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhhc
Confidence 111111111 1223456666655431111 11466
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002496 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~ 176 (915)
-.++|.++||+++++++|..||.|.+|.--. .....+.+.-|...|+++.|++ ++.+|.+|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC
Confidence 6689999999999999999999999996433 2234456677889999999999 99999999999999999999988
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-----------ccCeEEEEEeCCCCEEE
Q 002496 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-----------THNVSAVCFHPELPIII 245 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~l~ 245 (915)
..-+.....+|..+.++|+++ +.+....|+.|.+....+.....++.+. .+-.+.++++|.-+.++
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -cccccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 444556778999999999998 6778888999999987655443333321 23367789999777888
Q ss_pred EEEcCCcEEEEeCCCcceeeeee-----cCC------ccEEEEEEecCCCEEEEEec--------CCeEEEecCCCccee
Q 002496 246 TGSEDGTVRIWHATTYRLENTLN-----YGL------ERVWAIGYMKSSRRIVIGYD--------EGTIMVKIGREEPVA 306 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~-----~~~------~~v~~i~~~~~~~~l~~~~~--------dg~v~i~~~~~~~~~ 306 (915)
-.+..|.|.+||+.+.+.+..+. .+. -.+++++.+..|+++++.-. +|.+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~---------- 431 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS---------- 431 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE----------
Confidence 88899999999998776554432 111 23556666666777776432 12221
Q ss_pred EecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEE-cCCcEEEEEeecc
Q 002496 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVC-GDGEYIIYTALAW 384 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~-~~~~~~i~~~~~~ 384 (915)
..+|......+.+.+.+... . ++....+..+..+|..+ ..+++ .+|.+.+|-....
T Consensus 432 ------LKFW~~n~~~kt~~L~T~I~---~-------------PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 432 ------LKFWQYNPNSKTFILNTKIN---N-------------PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ------EEEEEEcCCcceeEEEEEEe---c-------------CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 23455444444444433211 2 22223333444444433 44444 5999999976433
Q ss_pred ccc---------------CccceeEEEEecCCcEEEEecCCeEEEeccCcc-ceeeee-c--------CcccceeecCcE
Q 002496 385 RNR---------------SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVR-P--------TFSAERIYGGTL 439 (915)
Q Consensus 385 ~~~---------------~~~~~~~~~~s~~g~~l~~~~~~~i~v~~~~~~-~~~~~~-~--------~~s~~~i~~g~~ 439 (915)
.+. +..++..++||.||..++.+.+++|.+||...+ +..... . .|..... ....
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 568 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQ-NDGA 568 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccc-cccc
Confidence 211 234678899999999999999999999996542 111110 0 1111100 1223
Q ss_pred EEEeeCCeEEEEeccCCcEEEE
Q 002496 440 LAMCSNDFICFYDWAECRLIRR 461 (915)
Q Consensus 440 La~~~~~~v~~~d~~~~~~i~~ 461 (915)
+..++...+.+|++-+..++..
T Consensus 569 ~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 569 LVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred eeeccCceEehHhhhhhheecc
Confidence 4445555999999998888773
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=175.03 Aligned_cols=271 Identities=15% Similarity=0.222 Sum_probs=205.6
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceeEEE--ecCC-CCE
Q 002496 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVYNYNTMDKVKVF--EAHT-DYI 102 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~-~~i 102 (915)
..+|++..+|.|++||..+++.+..+++++..++.++|.. ....+.+++.||+|++||+++......+ ..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 4567899999999999999987665444 3444 467
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEECCCCee-EEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC-
Q 002496 103 RCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD- 176 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~- 176 (915)
.|++.+..++.+++|+. +-.|.+||++...+ +......|...|+++.|+|.++++|++||.||-|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78888777888888754 67899999998755 5566778999999999999999999999999999999997643
Q ss_pred --CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc------------cCeEEEEEeC-CC
Q 002496 177 --PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------HNVSAVCFHP-EL 241 (915)
Q Consensus 177 --~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~~i~~~~-~~ 241 (915)
.+...-.+...|.++.|..++-+ .|.+-+...+..+|++..+.+...+.... ..+... .+| +.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc
Confidence 22222346778999999988733 37888888999999999887655443221 111111 223 33
Q ss_pred CEEEEEEc-CCcEEEEeCC---Ccc---eeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEecC
Q 002496 242 PIIITGSE-DGTVRIWHAT---TYR---LENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 242 ~~l~~~~~-dg~v~iwd~~---~~~---~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~ 300 (915)
...+.++. -|...++-+. ++. .+..+.+ +..-|.++.|...+..+.+|+.||.+.+|-.
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44444443 4555555432 333 3444554 5567888999999999999999999999964
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=5.9e-19 Score=187.91 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=95.1
Q ss_pred CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH---cCCHHHH
Q 002496 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM---LGKLEDC 742 (915)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~---~g~~~~a 742 (915)
.++.+|+++|++.++.|+++.|...|..++||-.+.++.+..|+ +.+.+++|.+.|+-...++++.. .|++-+|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk---~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK---TDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC---chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 34679999999999999999999999999999999999999999 88889999999999888888655 4899999
Q ss_pred HHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcCh
Q 002496 743 LQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNP 783 (915)
Q Consensus 743 ~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~ 783 (915)
+.+|.++.-+.-|+.+++.+.... ++|.-.|.....
T Consensus 987 v~FfTrAqafsnAIRlcKEnd~~d-----~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 987 VKFFTRAQAFSNAIRLCKENDMKD-----RLANLALMSGGS 1022 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHhhcCch
Confidence 999999999999999999986521 346656665543
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-20 Score=209.19 Aligned_cols=246 Identities=19% Similarity=0.303 Sum_probs=203.1
Q ss_pred CCCEEEEEEcCCCCe----EEEEEcCCcEEEEECCCC------ceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002496 15 SERVKSVDLHPSEPW----ILASLYSGTVCIWNYQSQ------TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~----la~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~v 83 (915)
..+-..++|.+.|.. ||.|+.||.|.+||...- ..+.+...|.++|..+.|++.+. +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999997765 888889999999997652 34566778999999999999765 9999999999999
Q ss_pred EECCCCceeEEEe--cCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCC--ccEEEEEEecCCCCEE
Q 002496 84 YNYNTMDKVKVFE--AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l 158 (915)
||++..+...... ...+.|.+++|+..- ..|++++.+|.+.|||++..+.++. +..+. ..+..+.|+|+....+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-LSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc-cccCCCccceeeeeeCCCCceee
Confidence 9998755444442 245689999999854 4678889999999999998743333 33332 3477899999888888
Q ss_pred EEEECCC---cEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEE
Q 002496 159 ASASLDR---TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 159 ~~~~~dg---~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 234 (915)
++++.|. .|.+||++.. .+.+.+.+|..+|.++.|++.+.. ++++++.|++|.+|+..+++.+..+......+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999764 466778899999999999998754 8999999999999999999999999988889999
Q ss_pred EEEeCCCC-EEEEEEcCCcEEEEeCCCcc
Q 002496 235 VCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 235 i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
+.|+|..+ .+++.+-||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999877 78888999999999977543
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=8.1e-19 Score=173.01 Aligned_cols=278 Identities=20% Similarity=0.271 Sum_probs=208.2
Q ss_pred CCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 15 ~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
..+|.++.|+++.. .||+|+.|..|+||-+..+. ....+..|...|+++.|+|+|..|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999876 99999999999999876532 234466799999999999999999999999999999
Q ss_pred ECC--------C--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEE
Q 002496 85 NYN--------T--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 85 d~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (915)
-.. + ....+.+.+|...|..++|+|++.++++++.|..+++||+..+ .....+..|.+.+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecccccccccee
Confidence 765 2 1234556789999999999999999999999999999999998 8888999999999999
Q ss_pred EEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-------------------cC----CCCeeEEEEEeCCCcCEEEEE
Q 002496 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-------------------AH----QKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------------------~~----~~~v~~~~~~~~~~~~~l~~~ 205 (915)
+|.| -+.++++-+.|...+.+++.....+.... .| ..-...++|+|+|. ++++.
T Consensus 172 awDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~--llvtP 248 (434)
T KOG1009|consen 172 AWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS--LLVTP 248 (434)
T ss_pred ecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc--EEEcc
Confidence 9999 78899998888877777664432221110 01 11234577888886 56654
Q ss_pred eC----C-----CeEEEEECCC-CcEEEEecCCccCeEEEEEeC------------------CCCEEEEEEcCCcEEEEe
Q 002496 206 SD----D-----HTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP------------------ELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 206 ~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~------------------~~~~l~~~~~dg~v~iwd 257 (915)
.. . +..++|+-.. .++...+.....+...+.|+| -+-.++.++. ..|.+||
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvyd 327 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYD 327 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEec
Confidence 31 1 2234454322 234444554455555555544 1224455554 4899999
Q ss_pred CCCcceeeee-ecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 258 ATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 258 ~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
..+..++..+ +.|...++.++|+++|..+++.+.||...+
T Consensus 328 tq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 328 TQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 8887765443 456789999999999999999999998876
No 175
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=8.9e-19 Score=165.00 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=195.3
Q ss_pred ccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECC
Q 002496 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 12 ~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~~dg~i~vwd~~ 87 (915)
.+|.-.|..+.|-| |...+.+++.|.+++|||..+-+....|+ .++.|.+-+|||- ..++|+|..+-.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 55577788889999999999988888887 6678999999984 4578888899999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCeeEEEEe--------------ecCCccEEEEEEec
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIF--------------EGHSHYVMQVTFNP 152 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~i~~~~~~p 152 (915)
+|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++...-+...+ ..|.+.+..++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999998876 5699999999999998542233222 34678899999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCCCe-eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 002496 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 228 (915)
++.++++++.|..+++|+..+|+....-. .|.... ..+... .+....++.--.++.+.++++-.+..++.+..|
T Consensus 257 -d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 257 -DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred -cchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 99999999999999999998876432211 111110 011111 111114444455689999999999999999999
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002496 229 THNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
...|.+..+-|+-+...+|..|+.+..|..
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 889999999999999999999999999986
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.8e-19 Score=171.30 Aligned_cols=244 Identities=21% Similarity=0.272 Sum_probs=197.1
Q ss_pred cCCCCEEEEEEcCC----CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002496 13 QRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~V~~v~~sp~----~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~ 87 (915)
.|...-..++|+-+ .++||+|+.-|.|+|.|+.+++..+.+.+|...|+.+.+.|+. ++++++|.|..|++||+.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36677788888764 4689999999999999999999999999999999999999976 678899999999999999
Q ss_pred CCceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe------------------------eEE---EE
Q 002496 88 TMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW------------------------MCT---QI 137 (915)
Q Consensus 88 ~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------~~~---~~ 137 (915)
++.++..|. +|.+.|.++.|+++|.+|++|+.|.+|++|++.... ... .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999998874 799999999999999999999999999999987320 000 01
Q ss_pred eecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC-CC-------------CceEEecCCCCeeEEEEEeCCCcCEEE
Q 002496 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PD-------------PNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~-~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
..-|..+|-|+.|- ++++++-+.++.|..|.... .+ ....+......++-+.|.-+..+..|+
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 22467778888885 68899999999999998721 11 122334455667788887776666899
Q ss_pred EEeCCCeEEEEECCCCcEE--EEe--cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 204 TGSDDHTAKVWDYQTKSCV--QTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.|...|.|.+||++...+. .++ ......|...+|+.||.+|+..+.|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999876542 111 2234568899999999999999999999999853
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=164.07 Aligned_cols=268 Identities=23% Similarity=0.329 Sum_probs=201.7
Q ss_pred CCeEEEEEc----CCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEE-EEeCC-------CeEEEEECCCC--
Q 002496 27 EPWILASLY----SGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVV-AGADD-------MFIRVYNYNTM-- 89 (915)
Q Consensus 27 ~~~la~~~~----dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~d-------g~i~vwd~~~~-- 89 (915)
.-.+++|.. ++.|++.++..+. ..+.|..|.+.|..++-+|..+.|+ ++..+ -.+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 345666653 6788888776542 2245667889999999999766554 44331 25779987532
Q ss_pred -------ceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEec-CCC
Q 002496 90 -------DKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNP-KDT 155 (915)
Q Consensus 90 -------~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~p-~~~ 155 (915)
+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......+ ..+....++-+|+| .++
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 2333443 4556899999999998888776 7789999999775433322 23566788999999 677
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeE
Q 002496 156 NTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVS 233 (915)
Q Consensus 156 ~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~ 233 (915)
+.+++. .|+++..||+++.+....+ ..|...|..+.|+|+... +|+++++||.|+|||.+. ..+++.+.+|...|+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 777775 4899999999988776665 467788999999998765 899999999999999986 558999999999999
Q ss_pred EEEEeCC-CCEEEEEEcCCcEEEEeCCCc-----------------------------ceeeeeecCCccEEEEEEecCC
Q 002496 234 AVCFHPE-LPIIITGSEDGTVRIWHATTY-----------------------------RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 234 ~i~~~~~-~~~l~~~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
++.|+|. .++|++||.|..|.+|....- ..+.++..|...|++++||.-.
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 9999994 468899999999999954211 1233566778899999999877
Q ss_pred CEE-EEEecCCeEEE
Q 002496 284 RRI-VIGYDEGTIMV 297 (915)
Q Consensus 284 ~~l-~~~~~dg~v~i 297 (915)
..+ |+-+.||.+.|
T Consensus 343 PWiFASLSYDGRviI 357 (370)
T KOG1007|consen 343 PWIFASLSYDGRVII 357 (370)
T ss_pred CeeEEEeccCceEEe
Confidence 654 55678888877
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2e-20 Score=199.28 Aligned_cols=281 Identities=19% Similarity=0.267 Sum_probs=231.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
+++..+.|.+|-+.|.|..|...|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEecCCCCEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~l 158 (915)
|.+.++..+..+.+|++.|++++|+|-. +.+.||++++||.+-. ..... ......+.++.|.. .+..+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~-~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFEN-NGDRF 331 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccc-ccccc
Confidence 9999999999999999999999999954 7789999999998821 11111 11234456666665 67889
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002496 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
++++.|+.-..|.+..- ..+...+.-+..+.+.+ .+.+++-.+-.+++|++.+|...+.+.+|...+..+.++
T Consensus 332 ~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccccCCcccccchhhHh------hhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 99999998877765321 11222222222222222 267777788899999999999999999999999999999
Q ss_pred CCCC-EEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 239 PELP-IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 239 ~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
|-.+ +..+++.||...|||+..|..++.+..+...+....||++|+.++...+-|.+.|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 9665 45578999999999999998887776666888999999999999999999999885
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=163.88 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=196.6
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcC--------CcEEEEECCCC---------ceeEEEE-ecCCCEEEEEEeCC
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYS--------GTVCIWNYQSQ---------TMAKSFE-VTELPVRSAKFVAR 68 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~d--------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~l~~s~~ 68 (915)
+.+.|..|.+.|..++-+|..+.|++..++ -.+.||.+... +++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 456678899999999999977655554433 24789987643 2333333 34568999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-eEEEe-----cCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeec
Q 002496 69 KQWVVAGADDMFIRVYNYNTMDK-VKVFE-----AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 69 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+..+++-. |..|.+|++..+.. +..+. .|....++-+|+| +++.+++. .|+++..||+++......+-..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99998876 78899999987766 33332 3566788899999 56666655 5689999999988666677778
Q ss_pred CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002496 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
|...|..+.|+|+...+|++|+.||.|++||.+.. .+++.+.+|..-|.++.|+|..+. ++++|+.|..|.+|....-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecccc
Confidence 99999999999988889999999999999999865 477888999999999999998876 8999999999999975321
Q ss_pred -----------------------------cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCcEEEEeCC
Q 002496 220 -----------------------------SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 -----------------------------~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
..+.++..|...|.+++|+.-.+ ++++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345677889999999998777 56677899999886543
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.2e-18 Score=186.33 Aligned_cols=286 Identities=18% Similarity=0.301 Sum_probs=218.3
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec---CCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 002496 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFVA--RKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~l~~s~--~~~~l~~~~~dg~i~vwd 85 (915)
..+....-..+.|+|-.+.++++...-.|+|||.+.++....|..+ ...|+.+.+.. |..++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3444556788999999999999988889999999999988887754 45788998876 456899999999999996
Q ss_pred C-CCC----ceeEEEec-------CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecC
Q 002496 86 Y-NTM----DKVKVFEA-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 86 ~-~~~----~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (915)
- .++ +.+....+ ..+.=.-+.|.....+|+++++-..|+|||......+..+..+....|+++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 3 232 22322221 11111446788877788888888899999999875555555566677888876655
Q ss_pred CCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCC--eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE--EEec
Q 002496 154 DTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLE 226 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~ 226 (915)
.++.++.|..||.|++||.+...+ +...+.|... |..+.+.+.|-+ -|++|+.+|.|++||++..... .++.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceee
Confidence 689999999999999999976543 4556677766 999999887765 6999999999999999974222 1222
Q ss_pred CC---ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-------CccEEEEEEecCCCEEEEEecCCeEE
Q 002496 227 GH---THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-------LERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 227 ~~---~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
.| .+.++++..|++.+++++|+. +.|+||++. |+.+..+..+ .+.+.+++|+|-.-.+|+|+.|.+|.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 235999999999999999997 899999976 5544444332 35679999999999999999999999
Q ss_pred Eec
Q 002496 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
++.
T Consensus 1377 iYs 1379 (1387)
T KOG1517|consen 1377 IYS 1379 (1387)
T ss_pred Eee
Confidence 864
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=163.08 Aligned_cols=294 Identities=11% Similarity=0.150 Sum_probs=224.7
Q ss_pred hhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC------CceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCC
Q 002496 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QTMAKSFE-VTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 7 ~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~dg 79 (915)
.++.+.+|.+.|.++.||.++++|++|+.|..+++|++.. .+++.... .|.+.|.|++|.....++.+|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3566789999999999999999999999999999999753 24444333 3568999999999999999999999
Q ss_pred eEEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE--EeecCCccEEEEEEecCCC
Q 002496 80 FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~~ 155 (915)
+|..-|+.+.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+....... ..........++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999888777652 235899999999999999999999999999986532222 2223445678899999888
Q ss_pred CEEEEEECCCcEEEEECCCCCC-ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecC
Q 002496 156 NTFASASLDRTIKIWNLGSPDP-NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG 227 (915)
Q Consensus 156 ~~l~~~~~dg~i~v~d~~~~~~-~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~ 227 (915)
.+|++.+..+-+-+||.+.... +... ......-..+.|+|+|++ +++--....-.+||+.+.++ +..+.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe--ehhhhccCCCEEeeeecccceeEecc-
Confidence 9999999999999999976542 2111 111222356789999984 66655555666788876444 33333
Q ss_pred Cc-------cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----------c-------------ceeeeeecCCccEEEE
Q 002496 228 HT-------HNVSAVCFHPELPIIITGSEDGTVRIWHATT----------Y-------------RLENTLNYGLERVWAI 277 (915)
Q Consensus 228 ~~-------~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~----------~-------------~~~~~~~~~~~~v~~i 277 (915)
|. ..+.+++|..+. .+++|+.+-.|++|.+.. | +.+..+.+|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 22 236677887775 499999999999997631 1 1234677888888999
Q ss_pred EEecCCCEEEEEecCCeEEEecCCCcc
Q 002496 278 GYMKSSRRIVIGYDEGTIMVKIGREEP 304 (915)
Q Consensus 278 ~~~~~~~~l~~~~~dg~v~i~~~~~~~ 304 (915)
.|+|....|++.+-...+.+|.....|
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred eecCCcceEeccchhhheeccccccCC
Confidence 999999999999999999999766554
No 182
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=3e-18 Score=178.14 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=184.6
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE--EEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVARK-QWVVAGADDMFIRVYN 85 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd 85 (915)
+.+..|-+.|..+.|-|-...|++++.|.++++||+++.+++.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44567999999999999667888999999999999999988776 88999999999999965 5678999999999999
Q ss_pred CCCCc---------------------------eeEEEecCCCCEEE---EEEcCCCCEEEEEEc-CCeEEEEECCCCeeE
Q 002496 86 YNTMD---------------------------KVKVFEAHTDYIRC---VAVHPTLPYVLSSSD-DMLIKLWDWEKGWMC 134 (915)
Q Consensus 86 ~~~~~---------------------------~~~~~~~~~~~i~~---l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 134 (915)
+.-.. .+..-..+...|.+ +.+..|...|++++. |+.|++||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 74211 11112234455555 566678888998888 999999999875221
Q ss_pred EE-------EeecC---CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCee--EEEEEeCCCcC
Q 002496 135 TQ-------IFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVN--CVDYFTGGDKP 200 (915)
Q Consensus 135 ~~-------~~~~~---~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~--~~~~~~~~~~~ 200 (915)
.. .+..| ...+.++.... .|.+|++.+.|++|++|++.+-. +...+.++...-. .-..+|++.
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-- 330 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-- 330 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--
Confidence 11 11122 23466777665 56677666679999999997643 3333333322211 223455665
Q ss_pred EEEEEeCCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcc
Q 002496 201 YLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-+++++.|..+++|++.++-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999999999999998754 456677899999999998843 356777999999999986553
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.3e-18 Score=176.87 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=122.2
Q ss_pred cEEEEEEecCCCCEEEEEECCCcEEEEECCCC-------CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.|+.+.|+|-|...|++++.||.|++|.+..+ ++...+..|...|+++.|+|-... +|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence 47889999989999999999999999998543 456678899999999999997654 8999999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCC-ccEEEEEEecCCCEEEEEecC
Q 002496 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL-ERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d 292 (915)
++++....+.+|.+.|.+++|+|+|+.+++.+.||+|++|..+.+. .+..-++.. .+--.+.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 9999999999999999999999999999999999999999987654 233322221 233456777777777765543
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=162.23 Aligned_cols=286 Identities=16% Similarity=0.174 Sum_probs=206.1
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
++...|++|.+.|+++.|..++. |.+|...|.|++|++.+......+. .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 44556779999999999999886 8899999999999999998888888 57788999998888 568888999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcC-----CCC----EEEEEEcCC-eEEEEECCCCeeEEEEe----ecCCccEEEEEE
Q 002496 85 NYNTMDKVKVFEAHTDYIRCVAVHP-----TLP----YVLSSSDDM-LIKLWDWEKGWMCTQIF----EGHSHYVMQVTF 150 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~-----~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~ 150 (915)
++.-+..+.. |+-.+.++-|.+ .++ .++.-+... .+.+-|.... ...+.. .+..+.++|..|
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCceeeeec
Confidence 9876544333 222333333332 211 111111100 0111121111 111111 123456777776
Q ss_pred ecCCCC--EEEEEECCCcEEEEECCCCCCc----------eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002496 151 NPKDTN--TFASASLDRTIKIWNLGSPDPN----------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 151 ~p~~~~--~l~~~~~dg~i~v~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
....+. +++.|..+|.+.+||+.++..+ .....|..+|.++.|.+..+. =++|+.+..+..|++..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r--Gisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR--GISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC--CcCCCccccceeeeecc
Confidence 543333 5677889999999999987433 333568889999999876552 56777777888888763
Q ss_pred --CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCe
Q 002496 219 --KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 219 --~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (915)
+.+ ........-.|..+.+-||++++++++.|+.||+|+.++.+.+..+..|...|.+++|+|+...+|.++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 222 1122223445888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 002496 295 IMVKI 299 (915)
Q Consensus 295 v~i~~ 299 (915)
|.+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99983
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=2.1e-17 Score=179.95 Aligned_cols=260 Identities=16% Similarity=0.195 Sum_probs=197.3
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCce--eEE----EecCCCCEEEEEEcC
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK--VKV----FEAHTDYIRCVAVHP 109 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~~~dg~i~vwd~~~~~~--~~~----~~~~~~~i~~l~~s~ 109 (915)
+.+.||+++........-....+|+|+.|+|. ...++.|+.+|+|.+||+..+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999877333333336778999999995 46677778899999999987655 222 236899999999977
Q ss_pred CCC--EEEEEEcCCeEEEEECCCCeeEEEEe-----e------cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002496 110 TLP--YVLSSSDDMLIKLWDWEKGWMCTQIF-----E------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 110 ~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-----~------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~ 176 (915)
+-. -+++++.||.|+.|+++.-..+.... . .....++++.|.|.+.+.|++|+.+|.|..-+..+.+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 49999999999999887432211111 1 1234588999999899999999999999874433322
Q ss_pred --------CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-CCcEEEEecCCccCeEEEEEeCCCC-EEEE
Q 002496 177 --------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELP-IIIT 246 (915)
Q Consensus 177 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~ 246 (915)
....+..|.++|+++.++|-+.. .+++++ |-+++||... ...++..+..+...+++++|||..+ .+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 23355678899999999999876 444444 8999999987 6677777777788899999999876 6667
Q ss_pred EEcCCcEEEEeCCCc--ceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 247 GSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+..+|.|.+||+... .++.+..........+.|++.|+.|++|...|.+.++
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 778999999998643 3445555555677889999999999999999999885
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.5e-16 Score=144.66 Aligned_cols=268 Identities=16% Similarity=0.289 Sum_probs=194.0
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCC----------CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
..|.+-+|+|.+++|++|..+|.|.++.+++ ...+-.+..|+++|..++|. ..+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 4577778999999999999999999998754 22344557899999999998 345666654 9999998
Q ss_pred CCCCce------eEE--EecCC-----CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEec
Q 002496 86 YNTMDK------VKV--FEAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 86 ~~~~~~------~~~--~~~~~-----~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
.+.... +.. ...|. ..|.+|...|..+-+++++.|+.++.||++++ +....+++|+.+|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 764322 111 11122 35889999998888888889999999999999 88999999999999998854
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCC----------CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE
Q 002496 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
....+++|+.||++++||.++++.+..+...+. -|.+++ .+.+ ++++|+ ...+.+|.++..++.
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~ed--WlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNED--WLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCc--eEEecC-CCceeEEeccCCCce
Confidence 567899999999999999999988877643221 133333 2333 666655 567999999998887
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC-CEEEEEecCCeEEE
Q 002496 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~i 297 (915)
..+. ...++..+.|..+ .++++++.+.|.-|.+. |.+...........++.+|+..- ++|.+++....+.+
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 7776 4456777888765 68888888899999865 55544444444445555554432 33444444444444
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.6e-18 Score=176.54 Aligned_cols=245 Identities=17% Similarity=0.261 Sum_probs=193.4
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002496 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 52 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
++..|...|+.+.|.|....|++++.||+|.+|++.. -+++.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4556888999999999999999999999999999931 24577889999999999999999999999999999
Q ss_pred EEEECCCC---------eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEE
Q 002496 124 KLWDWEKG---------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVD 192 (915)
Q Consensus 124 ~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~ 192 (915)
+.|++..+ ......+.||...|+.+++++ ....|++++.||+++.|......+ .++.. ..+...+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99965422 244567889999999999999 778899999999999999876665 33322 223334555
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-------ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceee
Q 002496 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
+-..... +.++...-+.-.+++......+..+... ...+..+.++|.+.+.+++..|+.|+++|..++.++.
T Consensus 447 ~~ss~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 5332211 2333333344445555555544444321 2347788999999999999999999999999999999
Q ss_pred eeecCCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
....|...++++++.|+|.+|.+|+.||.+.+|.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhh
Confidence 9999999999999999999999999999999973
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=7.5e-17 Score=152.06 Aligned_cols=273 Identities=16% Similarity=0.235 Sum_probs=201.6
Q ss_pred CEEEEEEcC---CCCeEEEEEc----CCcEEEEECC--CCceeEEE-EecCCCEEEEEEeCCCC-----EEEEEeCCCeE
Q 002496 17 RVKSVDLHP---SEPWILASLY----SGTVCIWNYQ--SQTMAKSF-EVTELPVRSAKFVARKQ-----WVVAGADDMFI 81 (915)
Q Consensus 17 ~V~~v~~sp---~~~~la~~~~----dg~v~iwd~~--~~~~~~~~-~~~~~~v~~l~~s~~~~-----~l~~~~~dg~i 81 (915)
.+.++.||. .+.+||.|+. ++.|.|..+. +++.+..- -.|.-|++.+.|.|+.. +||+++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 578899984 2347888875 5667776543 44444322 14788999999999873 455544 479
Q ss_pred EEEECCCCce----eEEE-----ecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCe--eEEEEeecCCccEEEEE
Q 002496 82 RVYNYNTMDK----VKVF-----EAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 82 ~vwd~~~~~~----~~~~-----~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~ 149 (915)
++|.+...+. ...+ ..+..++++..|+.- -++|.++|-|-+..|||++++. .+...+..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9999874221 1111 245678999999984 4578899999999999999862 35667788999999999
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCceEEec---CCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCC-CcEEEE
Q 002496 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---HQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~ 224 (915)
|...+.+.|++.+.||.+++||++.......+.. ...+...++|++.... |+++-. +...|.|.|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCCCcceeh
Confidence 9986778999999999999999988765444422 2456778888876554 676654 446799999986 457889
Q ss_pred ecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcce------eeeeecCCccEEEEEEecC-CCEEEEEecCC
Q 002496 225 LEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL------ENTLNYGLERVWAIGYMKS-SRRIVIGYDEG 293 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg 293 (915)
+++|.+.|..++|.|.. ..|+++|.|..+.+||+...-. +..+. ..+.|..+.|++. +..+++++...
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 99999999999999965 5899999999999999875322 22222 3467999999964 67788776554
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=172.03 Aligned_cols=290 Identities=28% Similarity=0.474 Sum_probs=232.5
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCeEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002496 6 EIKRKLAQRSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~V~~v~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~v 83 (915)
.....+..|...|.+++|+|++.++++++. ++.+++|+..++..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 344567889999999999999998888875 99999999999889999999999999999999998 4555589999999
Q ss_pred EECCCCceeE-EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 84 YNYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||..++.... .+..|.... ...|+|++.++++++.|+.+++|+..........+..|...+.++.|+| ++..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEee
Confidence 9988888887 688888875 4489999988999999999999999876442333367889999999999 777888899
Q ss_pred CCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEE-eCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002496 163 LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~ 239 (915)
.|+.+.+|+..+........ .|...+..+.+ +.. ...++.+ ..|+.+.+|+............ ...+..+.+++
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 380 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP 380 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC
Confidence 99999999988877666655 67777889998 532 1245555 6789999999987773333332 22288899988
Q ss_pred CCCEEEE-EEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCC
Q 002496 240 ELPIIIT-GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
...+.. +..++.+.+|+................+....+++++..++.++.++.+.+|...
T Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 544444 6889999999998877666555443688899999999999999999999887433
No 190
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=156.60 Aligned_cols=233 Identities=21% Similarity=0.328 Sum_probs=186.3
Q ss_pred CCCEEEEEEc-------CCCCeEEEEEcCCcEEEEECCCCceeEEEEe--cC---CCEEEEEEeCCCCEEEEEeCCCeEE
Q 002496 15 SERVKSVDLH-------PSEPWILASLYSGTVCIWNYQSQTMAKSFEV--TE---LPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 15 ~~~V~~v~~s-------p~~~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~---~~v~~l~~s~~~~~l~~~~~dg~i~ 82 (915)
.+.|...+|- |+..++|+.+.+.-|++||.-+|+...++.. |. ....+++|+|||.+|++|. ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 4557777774 6778899999999999999999998887765 32 2457899999999998874 57899
Q ss_pred EEEC-CCCceeEEE-------ecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecC
Q 002496 83 VYNY-NTMDKVKVF-------EAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 83 vwd~-~~~~~~~~~-------~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (915)
+||+ +.|..-..+ .+..+.|.|++|+|... .+++|+....+-||..... .+...+.+|.+.|+.++|.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e- 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE- 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-
Confidence 9998 555432221 13467899999999665 8899999999999988877 77788889999999999999
Q ss_pred CCCEEEEEEC-CCcEEEEECCCC-CCceEEecCCC-CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCc
Q 002496 154 DTNTFASASL-DRTIKIWNLGSP-DPNFTLDAHQK-GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT 229 (915)
Q Consensus 154 ~~~~l~~~~~-dg~i~v~d~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 229 (915)
+++.|++|.. |-.|..||++.. .++..+..|.. .-..|-|.-+.++.+|++|+.+|.|++||+++ +..+..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 8888888876 778999999864 45566665554 33456666666666999999999999999998 77788888899
Q ss_pred cCeEEEEEeCCCCEEEEEEcC
Q 002496 230 HNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~d 250 (915)
..+..++++|--+++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888887643
No 191
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.76 E-value=1.4e-14 Score=162.56 Aligned_cols=276 Identities=14% Similarity=0.208 Sum_probs=171.0
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCc--EEEEECCC-Cc---eeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGT--VCIWNYQS-QT---MAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~--v~iwd~~~-~~---~~~~~~--~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
|++.-.+...+|.-..++++...+. +.++.++. ++ ....+. ..+..|.++.|..++..++.+...|.|.+-|
T Consensus 17 ~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd 96 (1265)
T KOG1920|consen 17 GPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVD 96 (1265)
T ss_pred CCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEc
Confidence 4443455666666656666533222 23333222 22 111121 1335799999999999999999999999998
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC----C-----------------Ce-eEEEEeecC--
Q 002496 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE----K-----------------GW-MCTQIFEGH-- 141 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~----~-----------------~~-~~~~~~~~~-- 141 (915)
..+... .....-.+.|.+++||||++.++..+..+++.+-+-. . || .....+.+.
T Consensus 97 ~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 97 PETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred ccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchh
Confidence 877543 3333446789999999999999999888888776421 0 00 000011110
Q ss_pred -------------------CccEEEEEEecCCCCEEEEEE-----CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC
Q 002496 142 -------------------SHYVMQVTFNPKDTNTFASAS-----LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (915)
Q Consensus 142 -------------------~~~i~~~~~~p~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (915)
...=++++|-- |+.+|++.. ..+.|++||-. +.....-....+.-.+++|-|.|
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG 253 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC
Confidence 11124588987 888988832 23789999976 44333333334445789999987
Q ss_pred CcCEEEEE---eCCCeEEEEECCCCcE----EEEecCCccCeEEEEEeCCCCEEEE---EEcCCcEEEEeCCCcc--eee
Q 002496 198 DKPYLITG---SDDHTAKVWDYQTKSC----VQTLEGHTHNVSAVCFHPELPIIIT---GSEDGTVRIWHATTYR--LEN 265 (915)
Q Consensus 198 ~~~~l~~~---~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~i~~~~~~~~l~~---~~~dg~v~iwd~~~~~--~~~ 265 (915)
. .+++- .+++.|.+|.- +|-. ...+......+..++|+.++..|++ ......|++|.+.++. +.+
T Consensus 254 s--~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 254 S--LIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred C--eEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 7 56654 34567888874 3432 2223333445899999999998887 4555569999988876 334
Q ss_pred eeecCCccEEEEEEecCC-CEEEEEecCCeEEE
Q 002496 266 TLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~i 297 (915)
.+..+.... +.|+|.. ..+.+-..+|...+
T Consensus 331 ~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 331 ELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred EEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 444443333 8888853 34444446666655
No 192
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.76 E-value=4.3e-12 Score=149.90 Aligned_cols=545 Identities=13% Similarity=0.162 Sum_probs=302.0
Q ss_pred CCEEEEEEcCCCCeEEEEEcCC----cEEEEECCCCc---eeEEEE-----ecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSG----TVCIWNYQSQT---MAKSFE-----VTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg----~v~iwd~~~~~---~~~~~~-----~~~~~v~~l~~s~~~~~l~~~~~dg~i~v 83 (915)
..+...+|.+....+.++.... .|.+....... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3678888888776555444322 34444433332 222332 23467999999999999999999999999
Q ss_pred E----ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------------------ee-EEEE
Q 002496 84 Y----NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------WM-CTQI 137 (915)
Q Consensus 84 w----d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------~~-~~~~ 137 (915)
. +..+. .+.....-...|.+++||||+..|+..+.+|++.+.+-.=. |- ....
T Consensus 102 ~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 54442 23333344678999999999999999999999888752100 00 0000
Q ss_pred eec------------------------CCccEEEEEEecCCCCEEEEEEC---C---CcEEEEECCCCCCceEEecCCCC
Q 002496 138 FEG------------------------HSHYVMQVTFNPKDTNTFASASL---D---RTIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 138 ~~~------------------------~~~~i~~~~~~p~~~~~l~~~~~---d---g~i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|.| +...-..++|-. ||.+|++.+. . +.++||+-. |....+...-.+-
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 000 222456788988 9999999875 2 578999864 5443333333333
Q ss_pred eeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEec----CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 188 VNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLE----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
-.+++|-|.|+ +|++... ...|.+|. ++|-.-..|. .....|..+.|++++..|+....|. |.+|...+
T Consensus 259 e~~l~WrPsG~--lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 259 EGALSWRPSGN--LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred cCCccCCCCCC--EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 45789999998 6666543 35677777 4454433333 3456799999999999999987664 99999988
Q ss_pred cc--eeeeeecCC-ccEEEEEEecC-CCEEEEEecCCeEEEe----cCCCcceeEecCCCcEEEEeeCceEEEEeeeccc
Q 002496 261 YR--LENTLNYGL-ERVWAIGYMKS-SRRIVIGYDEGTIMVK----IGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (915)
Q Consensus 261 ~~--~~~~~~~~~-~~v~~i~~~~~-~~~l~~~~~dg~v~i~----~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 332 (915)
+. +.+.+.... ..+..+.|+|. ...|.+.+.+|.+... .....+...-...|.+.......+.+..+....
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~- 413 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV- 413 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC-
Confidence 76 334444332 34455999996 4557777776666552 111010000011112221122222222111100
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeeccccc-----------------------C
Q 002496 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWRNR-----------------------S 388 (915)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~~~-----------------------~ 388 (915)
-+.++...++. ....+..++|++++..+++. ++|.+.+|........ .
T Consensus 414 -------VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 414 -------VPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred -------CCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 00011112222 23467899999998755555 5898999974322110 1
Q ss_pred ccceeEEEEecCCcEEEEecC----CeEEEeccCccc-eeeeecCcccceeecCcEEEEeeCC--eEEEEeccCCcEEE-
Q 002496 389 FGSALEFVWSSDGEYAVRESS----SKIKIFSKNFQE-KRSVRPTFSAERIYGGTLLAMCSND--FICFYDWAECRLIR- 460 (915)
Q Consensus 389 ~~~~~~~~~s~~g~~l~~~~~----~~i~v~~~~~~~-~~~~~~~~s~~~i~~g~~La~~~~~--~v~~~d~~~~~~i~- 460 (915)
......++|..+..+++.... ..+.+++..... ...+......+ +..+.....+ ...++-..+|+.+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 234577888877766555543 456666542211 11111111111 1122221111 21223333443331
Q ss_pred ----------EEEccccEEEE--cCCCC---EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeE
Q 002496 461 ----------RIDVTVKNLYW--ADSGD---LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (915)
Q Consensus 461 ----------~~~~~i~~v~~--s~dg~---~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (915)
.+...+..+.. ..+.. .++..++.+.++.. -..+...+
T Consensus 562 ~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n---------------------------~~~la~~~ 614 (928)
T PF04762_consen 562 SSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYAN---------------------------SRLLASNC 614 (928)
T ss_pred ecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEEC---------------------------CEEEecCC
Confidence 11111111111 11211 22222333333321 11234567
Q ss_pred EeeEEecCEEEEEccCCeEEEEECC-----------E-----EeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEec
Q 002496 526 RTGLWVGDCFIYNNSSWRLNYCVGG-----------E-----VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (915)
Q Consensus 526 ~~~~w~~~~~i~~~~~~~l~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 589 (915)
+|....+++++|+|.+..+.+.... . -..++...+-..++...|+..++++.-..||+-...+.
T Consensus 615 tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR 694 (928)
T PF04762_consen 615 TSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPR 694 (928)
T ss_pred ceEEEEcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccH
Confidence 7888889999999997667665533 0 01233444455677888889999999999988776653
Q ss_pred chHH-HHHHHHHccCHHHH
Q 002496 590 LSLI-EYKTLVMRGDLERA 607 (915)
Q Consensus 590 ~~~~-~~~~~~~~~~~~~a 607 (915)
.-++ .-...+.++++-+|
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~A 713 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEA 713 (928)
T ss_pred hHHHHHHHHHHhhccHHHH
Confidence 2222 22334445555554
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.1e-16 Score=142.68 Aligned_cols=227 Identities=20% Similarity=0.290 Sum_probs=168.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.|.+-+|+|.+++|++|+.+|.|.+..+++. .++..+++|.++|..++|+ ..+|++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3556689999999999999999999988642 2344557999999999998 345666665 99999988
Q ss_pred CCCee---EEEEe----e-----cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC
Q 002496 129 EKGWM---CTQIF----E-----GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG 196 (915)
Q Consensus 129 ~~~~~---~~~~~----~-----~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (915)
+...+ +...+ . ..-..|.++...| ..+.+++++.|+.++.||+.+++....+++|...+.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 64311 11110 1 1124578899999 5555666668999999999999999999999999999987333
Q ss_pred CCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc----------cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002496 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT----------HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.. .+++|+.||++++||.++++++..+.... ..|-+++. +..++++|+ ...+.+|+++..+....
T Consensus 168 ~~--qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 168 NG--QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred Cc--ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEE
Confidence 32 49999999999999999999988775422 12444444 445777766 55799999999988888
Q ss_pred eecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+..+ .++..+.|..+ .+++++....+.-
T Consensus 243 fpip-a~v~~v~F~~d--~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 243 FPIP-ARVHLVDFVDD--CVLIGGEGNHVQS 270 (325)
T ss_pred Eecc-cceeEeeeecc--eEEEeccccceee
Confidence 8766 67888888654 4555655544444
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.5e-16 Score=152.46 Aligned_cols=243 Identities=16% Similarity=0.245 Sum_probs=194.2
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 52 ~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.+.....+|+|.+|++|+..+|++..+..|.||.....+ ..++++.|...|++++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 344456799999999999999999999999999877554 56788899999999999999999999999999999998
Q ss_pred CCC--eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc----eEEecCCCCeeEEEEEeCCCcCEE
Q 002496 129 EKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 129 ~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
..+ ++....+..++...+++.|+| .++.|++|+..+.|.||-+.....- ..-..+...|.+++|+|++- ++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--Ll 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--ee
Confidence 433 445556677899999999999 8999999999999999988654321 12235667899999999887 79
Q ss_pred EEEeCCCeEEEEECCC------------------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-e
Q 002496 203 ITGSDDHTAKVWDYQT------------------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-L 263 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~ 263 (915)
++|+.|+..+++..-- |+.+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 9999999999997421 22334444566789999999999999999999999999977654 4
Q ss_pred eeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 264 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+..+....-+..++.|-.+...++.|.+-+-+.+
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 5555555577888888887776666665454443
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.4e-16 Score=151.03 Aligned_cols=308 Identities=16% Similarity=0.260 Sum_probs=201.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEc-CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002496 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~ 92 (915)
-+.|..+.|..|.-+++++.+ ++.|.+|++...+-...+.....++.+++|||||+.|+.. .-+-.|.||.+.|.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999999988887655 8899999998888888888888899999999999766654 55889999999885544
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
. ++.....+..++|+|+|++.+.++.-...-.+++. ..+.+...+....-..+.+.|+| |++.+++ |
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laV---------w 196 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAV---------W 196 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEE---------e
Confidence 3 33334456889999999998887753211111111 11222233333334456677777 5555543 3
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-----------------------------
Q 002496 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC----------------------------- 221 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------- 221 (915)
|.--.-.+.... ..-++..+.|+|.++ ++++|+.|+.+++.+--+.++
T Consensus 197 d~~Leykv~aYe-~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 197 DNVLEYKVYAYE-RGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred cchhhheeeeee-eccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 321111111111 224566677777665 677777777766654211100
Q ss_pred -------------------------------EEEec------CCccCeEEEEEeCCCCEEEEEEcC--CcEEEEeCCCcc
Q 002496 222 -------------------------------VQTLE------GHTHNVSAVCFHPELPIIITGSED--GTVRIWHATTYR 262 (915)
Q Consensus 222 -------------------------------~~~~~------~~~~~i~~i~~~~~~~~l~~~~~d--g~v~iwd~~~~~ 262 (915)
+..++ ...-.+.-++|++|..++++-... +.+-+||+++.+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 01111 122346789999999888886532 469999998776
Q ss_pred eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCcee
Q 002496 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
+...+. ...+|....|.|....|++.+....+++|......++...
T Consensus 354 l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP--------------------------------- 399 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP--------------------------------- 399 (447)
T ss_pred hhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---------------------------------
Confidence 554443 4478999999999999999988888888754433222221
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEE
Q 002496 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYII 378 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i 378 (915)
.....++.+.|..+|.+++.++...+.+
T Consensus 400 --------~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 400 --------KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred --------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 1224567899999999999998766654
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=1.5e-16 Score=173.28 Aligned_cols=243 Identities=17% Similarity=0.238 Sum_probs=185.9
Q ss_pred CCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCCCce--eEE----EEecCCCEEEEEEeCCCCE--EEEEeCCCeEEEEE
Q 002496 15 SERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTM--AKS----FEVTELPVRSAKFVARKQW--VVAGADDMFIRVYN 85 (915)
Q Consensus 15 ~~~V~~v~~sp~~-~~la~~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~l~~s~~~~~--l~~~~~dg~i~vwd 85 (915)
...|+|+.|+|.. .++|.|+++|.|.+||++.+.. ... ...|..+|..+.|..+..- +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4579999999955 4677778899999999987755 222 2358899999999876544 99999999999998
Q ss_pred CCCCce-eE-----EEe------cCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCC---Ce----eEEEEeecCCccE
Q 002496 86 YNTMDK-VK-----VFE------AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK---GW----MCTQIFEGHSHYV 145 (915)
Q Consensus 86 ~~~~~~-~~-----~~~------~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~---~~----~~~~~~~~~~~~i 145 (915)
++.... .. ... .....+++++|.+.. ..+++|++.|.|.--+..+ .. +....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764322 10 011 123368899999855 4688999999887744332 21 1233556788999
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC--cEE
Q 002496 146 MQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCV 222 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~ 222 (915)
.++.++|-....|.+++ |-++++|+.. ...++..+..+...+++++|||.... +++++..+|.+.+||+... .++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhccccCCc
Confidence 99999996566666665 9999999988 67778888878888999999998664 8888999999999999653 355
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.+...+....+.+.|+++|+.|++|...|.+++|++.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5555556667788999999999999999999999985
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=166.38 Aligned_cols=296 Identities=19% Similarity=0.255 Sum_probs=234.3
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeCC--CCEEEEEeCCCe
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR--KQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~--~~~l~~~~~dg~ 80 (915)
++.+..+|.+|.+.|..|.|+..|..|++|+.|..|.+||+.++.....+. +|...|....|.|. ...+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 567889999999999999999999999999999999999999998877765 68888888889884 467999999999
Q ss_pred EEEEECCC-Cce--eEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEE--EEeecCCc---cEEEEEEe
Q 002496 81 IRVYNYNT-MDK--VKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCT--QIFEGHSH---YVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~~-~~~--~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~---~i~~~~~~ 151 (915)
+++=.+.. +.. .+.+..|.++|.-++.-|+.+ -+.+++.|+.+.-.|++.+.... ..-..+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99876543 322 345668999999999999775 47899999999999998762111 11122333 57889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC------ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSPDP------NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT- 218 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 218 (915)
|...+.+++++.|..+++||.+.-.. +.++ ......|+|++|+.++.. +++...|-.|+++.-..
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccc
Confidence 98888999999999999999864221 1222 133457899999977764 77777888899995432
Q ss_pred -C----------cEEEE-ecCCcc--CeEEEEE-eCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCC
Q 002496 219 -K----------SCVQT-LEGHTH--NVSAVCF-HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 219 -~----------~~~~~-~~~~~~--~i~~i~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
| ..+.. +++|.. .|..+-| -|...++++|+.-|.|.||+-.+++.+..+.+...-|.|+.-+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 12222 567754 3666664 5778899999999999999999999999888887889999999999
Q ss_pred CEEEEEecCCeEEEecCC
Q 002496 284 RRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 284 ~~l~~~~~dg~v~i~~~~ 301 (915)
..||+.+-|.-|.||...
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 999999999999999653
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=153.97 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=156.1
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEE-EeecCC-ccE
Q 002496 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQ-IFEGHS-HYV 145 (915)
Q Consensus 70 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-~~i 145 (915)
..++++...|.|++||..+++.+..+++++..+..+.|.. ....+.+|+.||+|++||+++..+..+ .+..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999977 455788999999999999997644333 334444 456
Q ss_pred EEEEEecCCCCEEEEEEC----CCcEEEEECCCCCC-ceE-EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC
Q 002496 146 MQVTFNPKDTNTFASASL----DRTIKIWNLGSPDP-NFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.+++.+- ..+.+++|+. +-.|.+||.+..+. +.. ...|...|++++|+|.... +|++|+.||.|.+||+...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 6777665 5678888764 56799999998765 433 3679999999999998765 9999999999999998753
Q ss_pred c---EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeee
Q 002496 220 S---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 220 ~---~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
. .+...-.+...|.++.|+.++ +.|.+-+..+...+|++..+.....+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 223333477789999999887 458888889999999999887554443
No 199
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.8e-14 Score=150.07 Aligned_cols=367 Identities=15% Similarity=0.199 Sum_probs=252.8
Q ss_pred CchhhhhhcccCCCCEEEEEEcCC------------CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC--
Q 002496 3 LRLEIKRKLAQRSERVKSVDLHPS------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-- 68 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~V~~v~~sp~------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-- 68 (915)
+.++....+..|...|+.+.|.|- ...||++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 456778888999999999999873 125778888999999999999999999999999999999873
Q ss_pred -C-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC------eeEEEEee
Q 002496 69 -K-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFE 139 (915)
Q Consensus 69 -~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 139 (915)
. ..|++-.....|.+||..+|++............|+.+.| |.+.+..-+..|.+.+-+.-.. .+..++..
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4566667778999999999999988887777888899998 4556666666777777654311 12222222
Q ss_pred cCCc-------------------------cEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEE
Q 002496 140 GHSH-------------------------YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 140 ~~~~-------------------------~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 194 (915)
.|.. +...++|+|.-.+.++. ...+.+.++|+.-..+.....-..+.+.-+.|.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 2221 12245678844555444 456789999998888777777777888889999
Q ss_pred eCCCcCEEEEEeCCCeEEEEECCC----------------CcEEE---Ee------------------------------
Q 002496 195 TGGDKPYLITGSDDHTAKVWDYQT----------------KSCVQ---TL------------------------------ 225 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~---~~------------------------------ 225 (915)
|++++..+.+...||.+.+|-.+. +.... .+
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 999988999999999999996432 11110 00
Q ss_pred ------------------------------------------cCCccCeEEEEEe-----------CCC-------CEEE
Q 002496 226 ------------------------------------------EGHTHNVSAVCFH-----------PEL-------PIII 245 (915)
Q Consensus 226 ------------------------------------------~~~~~~i~~i~~~-----------~~~-------~~l~ 245 (915)
.+|....++.... |.+ ++++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0111222222211 112 3688
Q ss_pred EEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEE
Q 002496 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTV 325 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 325 (915)
.|...|+|.++|+.++..-..+..|...|.++.|.....++-.++..-.-. .| -..+++.+.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~--------------sg----~vrN~l~vt 503 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSA--------------SG----GVRNDLVVT 503 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecccccc--------------cc----ceeeeEEEE
Confidence 999999999999999999999999999999999988776665554321100 00 011223332
Q ss_pred EeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEe
Q 002496 326 NIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWS 398 (915)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s 398 (915)
. +.+|...+.... -+..+.+++.|..|..|+||++.- +.-+.+|+.+..+ .+.+-.++.+.|+
T Consensus 504 d---------LrtGlsk~fR~l-~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 504 D---------LRTGLSKRFRGL-QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred E---------cccccccccccC-CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 2 334433222111 134566889999999999999987 6778888775442 3344457888888
No 200
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3e-16 Score=154.14 Aligned_cols=227 Identities=14% Similarity=0.228 Sum_probs=169.4
Q ss_pred hcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002496 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~ 80 (915)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+|.- +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 4567899999999999998765 4567788999999999999964 67889999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCc-cEEEEEEecCCCCEEE
Q 002496 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~l~ 159 (915)
|.+||+.||+.+..+. |.+.|.++.|+.+|.+|++.+.|..|+|||.+++ .+...-.+|.+ .-..+.|-. ++..+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~-~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA-SGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec-cCceee
Confidence 9999999999988888 9999999999999999999999999999999998 44444455643 334455665 666555
Q ss_pred EEE---CCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecC--CccC
Q 002496 160 SAS---LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG--HTHN 231 (915)
Q Consensus 160 ~~~---~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~ 231 (915)
+|- .++++-+||..+-+....+. ....+|.---|.++.. -+.++|-.|+.|+-|.+.+..+ ++.+.. ...+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~-ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS-IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC-EEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence 543 36789999976644322221 2334454444555544 3566778899999999876553 232222 2233
Q ss_pred eEEEEEeCC
Q 002496 232 VSAVCFHPE 240 (915)
Q Consensus 232 i~~i~~~~~ 240 (915)
-..+.|-|.
T Consensus 312 QRG~g~mPK 320 (472)
T KOG0303|consen 312 QRGMGFMPK 320 (472)
T ss_pred ccccccccc
Confidence 445666664
No 201
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.73 E-value=8.8e-16 Score=162.01 Aligned_cols=216 Identities=24% Similarity=0.284 Sum_probs=160.1
Q ss_pred EEec--CEEEEEccCCeEEEEECC---EEeEEEecccceEEEEEEeeCCE-EEEEecCCceEEEEecchHHHHHHHHHcc
Q 002496 529 LWVG--DCFIYNNSSWRLNYCVGG---EVTTMFHLDRPMYLLGYLASQSR-VYLIDKEFNVMGYTLLLSLIEYKTLVMRG 602 (915)
Q Consensus 529 ~w~~--~~~i~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 602 (915)
.|++ |+++..+. +.++.+++. +..+....+.. +.++...+++ -+++-....-+.|.++..+++|..++..|
T Consensus 382 qwvp~sdvivaqn~-dnl~iwyn~d~peqvt~~kikgd--v~~l~r~~~kteviv~e~takvayeld~~~iefgaaid~~ 458 (1636)
T KOG3616|consen 382 QWVPGSDVIVAQNG-DNLCIWYNIDAPEQVTMFKIKGD--VEALERDADKTEVIVMEGTAKVAYELDEGLIEFGAAIDDG 458 (1636)
T ss_pred eeccCcceEEecCC-CceEEEecCCcchhheeeEeccc--chhhhcCCCceeEEEeecceeEEEEecCcceecccccccC
Confidence 3775 77776555 667776643 33333333322 2222223332 23333555667899999999999999888
Q ss_pred CHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 002496 603 DLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTG 682 (915)
Q Consensus 603 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~ 682 (915)
+++.|... |+...+-. +...+|..||++|+..|
T Consensus 459 df~ra~af---------------les~~~~~--------------------------------da~amw~~laelale~~ 491 (1636)
T KOG3616|consen 459 DFDRATAF---------------LESLEMGP--------------------------------DAEAMWIRLAELALEAG 491 (1636)
T ss_pred chHHHHHH---------------HHhhccCc--------------------------------cHHHHHHHHHHHHHHhc
Confidence 88876444 44433322 22579999999999999
Q ss_pred ChhhHHHHHHHcCCcchhHHHHHhcCCHHHH------------HHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCC
Q 002496 683 KLEMAEGCMKQAMDLSGLLLLYSSLGDAEGI------------SKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 683 ~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
++-+|++||...+|..++.+|+-...-++.+ +-.+.++....++.+|..+++..++.++|+-||.+..
T Consensus 492 nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lh 571 (1636)
T KOG3616|consen 492 NLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELH 571 (1636)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999999998765544433 3457888888899999999999999999999999999
Q ss_pred CchHHHHHHHhcCCchHHHHHHHHHHhhhhcC--hhhhhhcCCCcc
Q 002496 751 RIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--PKAAESLADPEE 794 (915)
Q Consensus 751 ~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~--~~~a~~l~~~~~ 794 (915)
+|+||+.+|+..+++.+..+..-|-++|...+ .|+|+.-...++
T Consensus 572 kwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd 617 (1636)
T KOG3616|consen 572 KWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGD 617 (1636)
T ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCc
Confidence 99999999999999999999989999998776 455555444443
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=2.9e-17 Score=164.61 Aligned_cols=270 Identities=16% Similarity=0.246 Sum_probs=223.3
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 96 (915)
.-..+.++.+|.+|+.|+..|.|..+|+.++++...+... ..|..+.|-.+.+++|++. ...++|||- .|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence 4567899999999999999999999999999999888754 4689999999999888875 467999995 567788887
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002496 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~ 176 (915)
.|. .|..+.|-|..-+|++++..|.++--|+.+| .+...+....+.+..++-+| -+..+-+|...|+|.+|+..+.+
T Consensus 208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hcC-chhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc
Confidence 654 6889999999888899999999999999999 56666666778889999999 78899999999999999999999
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002496 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
++..+..|.++|.++++.++|. |+++.+.|..++|||+++...+.++.. ..+...+++|..| +++.+....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999988 999999999999999998877777764 5667888998876 3444555689999
Q ss_pred eC-CCcc--eeeeee--cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 257 HA-TTYR--LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~-~~~~--~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
.- ..+. ....+- ...+.|..+.|.|-...|-+|...|.-.+
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 52 2211 111111 11358999999999999999998887665
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=6.8e-16 Score=147.98 Aligned_cols=234 Identities=16% Similarity=0.165 Sum_probs=185.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CC
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NT 88 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~-~~ 88 (915)
--..+|+|.+|++|+..+|++..+..|.||...... ..++++.|...|+++.|+|..+.|++++.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999976654 56778889999999999999999999999999999998 33
Q ss_pred C--ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---eeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 89 M--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 89 ~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
+ ++...+..++...+++.|+|.++.+++|+.-..|.||-.+.. +...++-..+.+.|.++.|+| ++-++++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence 3 344456678999999999999999999999999999987643 233445556778899999999 8889999999
Q ss_pred CCcEEEEECC-----C-------------CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-EEEE
Q 002496 164 DRTIKIWNLG-----S-------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQT 224 (915)
Q Consensus 164 dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 224 (915)
|+..++|..- . |.....+....+.+..+.|+|+|. .|+-.+.|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeecCCCchhccc
Confidence 9999999741 1 112233345667899999999998 69999999999999977554 3444
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcC
Q 002496 225 LEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
.....-+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444446777777776644 4444444
No 204
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=8.7e-16 Score=144.95 Aligned_cols=239 Identities=17% Similarity=0.225 Sum_probs=181.8
Q ss_pred ccCCCCEEEEEEcCCCC-----eEEEEEcCCcEEEEECCCC--ce--eEEE-----EecCCCEEEEEEeC-CCCEEEEEe
Q 002496 12 AQRSERVKSVDLHPSEP-----WILASLYSGTVCIWNYQSQ--TM--AKSF-----EVTELPVRSAKFVA-RKQWVVAGA 76 (915)
Q Consensus 12 ~~h~~~V~~v~~sp~~~-----~la~~~~dg~v~iwd~~~~--~~--~~~~-----~~~~~~v~~l~~s~-~~~~l~~~~ 76 (915)
..|.-+++.+.|.|+.. +||+.+ ..+++|.+... +. ...+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999873 555543 47999998732 11 1111 23567999999987 567788899
Q ss_pred CCCeEEEEECCCCce---eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecC--CccEEEEEE
Q 002496 77 DDMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTF 150 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~ 150 (915)
-|-+..|||++++.. ...+-+|...|..++|...+ +.+++++.||.++++|++......-+++.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998733 45567899999999999855 468899999999999999764444444432 467889999
Q ss_pred ecCCCCEEEEEECC-CcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc------EE
Q 002496 151 NPKDTNTFASASLD-RTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------CV 222 (915)
Q Consensus 151 ~p~~~~~l~~~~~d-g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~ 222 (915)
++.+.+++++-..| ..|.+.|++.+ .++..+++|...|+.++|.|.... .|+++++|..+.+||+...- ++
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCch
Confidence 99999999987665 46899999875 467788999999999999998765 89999999999999997532 22
Q ss_pred EEecCCccCeEEEEEeCC-CCEEEEEEcCCcEEE
Q 002496 223 QTLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRI 255 (915)
Q Consensus 223 ~~~~~~~~~i~~i~~~~~-~~~l~~~~~dg~v~i 255 (915)
.... ..+.|..+.|++. ...|+.+. ++.+.+
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 2233 4567999999974 44676665 344444
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.2e-15 Score=147.47 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=181.6
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------CCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002496 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN------TMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 51 ~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~------~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|++. +.+++.... .|...|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3455799999999999999999999999999999975 335555554 455899999999999999999999999
Q ss_pred EEEECCCCeeEEEEee--cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC-Cce--EEecCCCCeeEEEEEeCCC
Q 002496 124 KLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNF--TLDAHQKGVNCVDYFTGGD 198 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~-~~~--~~~~~~~~v~~~~~~~~~~ 198 (915)
..-|+++. ....++. ...+.|..+..+| ..+.|++.+.++.|.+||.+... +.. .+.........+-|+|...
T Consensus 130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETK-QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccc-eeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987 3333332 1235899999999 68899999999999999997654 222 2233455677888998766
Q ss_pred cCEEEEEeCCCeEEEEECCCCcE-EEE------ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee-eeeecC
Q 002496 199 KPYLITGSDDHTAKVWDYQTKSC-VQT------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYG 270 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~ 270 (915)
. +|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+++--....-.+||+.+.++. ..+...
T Consensus 208 ~-Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 208 A-LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred e-eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 5 888999999999999875432 111 1111122356789999998888766666667887765532 222211
Q ss_pred ------CccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 271 ------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 271 ------~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
...+.+++|..+- .+++|+++-.+.+|-
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 2346778887664 489999998888883
No 206
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.1e-16 Score=160.04 Aligned_cols=244 Identities=17% Similarity=0.299 Sum_probs=178.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE-ecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~s~--~~~~l~~~~~dg~ 80 (915)
++.+...|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +...+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 567788899999999999999999999999999999999998888887765 6999999999999 4567889999999
Q ss_pred EEEEECCCC----------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecC--------
Q 002496 81 IRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-------- 141 (915)
Q Consensus 81 i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------- 141 (915)
|+++|+... .....+..|.+.|..|+.-|++ ..+.++++||+|+-+|++....+......+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999842 2344566899999999999999 567899999999999998753333222111
Q ss_pred -CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-----ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 142 -SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-----DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 142 -~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
--...|+..+|.+..+|++|+.|--.++||.+...+...- ........|+.+...+. + ...+|.+.
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~--- 270 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH---L--KNSQGNLD--- 270 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc---c--cCcccccc---
Confidence 1346789999999999999999999999996432221110 11122233444332222 1 11111110
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeee
Q 002496 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
. ....++-++|+|+|.-|++.-..-.|+++|+..++....
T Consensus 271 -------~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 -------R----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -------c----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0 112356789999998777665566899999987775443
No 207
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=2.2e-14 Score=154.23 Aligned_cols=259 Identities=13% Similarity=0.191 Sum_probs=173.7
Q ss_pred EEcCCcEEEEECCC-Cc--eeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC-CCce--eEEEecCCCCEEEE
Q 002496 33 SLYSGTVCIWNYQS-QT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN-TMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 33 ~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l 105 (915)
...++.|.+|++.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ..+....+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 35689999999964 43 444554 345677899999999987765 47889999987 3332 22222 33456789
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCee---EEEEeecCCccEEEEEEecCCCCEE-EEEECCCcEEEEECCCCCCce-
Q 002496 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTF-ASASLDRTIKIWNLGSPDPNF- 179 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~p~~~~~l-~~~~~dg~i~v~d~~~~~~~~- 179 (915)
+|+|+++++++++. ++.|.+|+++.... ....+. +.....+++++| +++.+ ++...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999999888764 78999999974311 222222 223456788999 66666 455567999999997633221
Q ss_pred ----EEe-cCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEEEECCC--Cc--EEEEecCC------ccCeEEEEEeCCCCE
Q 002496 180 ----TLD-AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT--KS--CVQTLEGH------THNVSAVCFHPELPI 243 (915)
Q Consensus 180 ----~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~i~~i~~~~~~~~ 243 (915)
... ........+.|+|+++ +++++.. ++.|.+|++.. ++ .+..+... ......+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234467899999987 6666654 89999999973 32 23333221 112346889999999
Q ss_pred EEEEEc-CCcEEEEeCCCcc----eeeeeecCCccEEEEEEecCCCEEEEEec-CCeEEEe
Q 002496 244 IITGSE-DGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~v~i~ 298 (915)
++++.. ++.|.+|++.... .+...... ...+.+.++|+|++|+++.. +++|.+|
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 998854 6889999985432 22222222 34568999999999998775 7778775
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.6e-15 Score=167.85 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=166.5
Q ss_pred CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002496 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
+..|.|||..... .+.+..+...+.+.+|+|||+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999976554 55677788889999999999999987653 4799999988764322 21223344689999999
Q ss_pred EEEEEE-cCCeEEEE--ECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCe
Q 002496 113 YVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 113 ~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v 188 (915)
.|+.++ .+|.+.|| |+.++ .. ..+..+...+.+..|+| ++..|+.++ .+|...+|++...........+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~-~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGG-TP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCC-Ce-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 888765 57765555 66655 33 33455666788999999 777666544 578888887643222222223333
Q ss_pred eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC--CCcceeee
Q 002496 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA--TTYRLENT 266 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~ 266 (915)
.+..|+|+++ +++..+.++ +.+||+.+++........ ...++.|+|+|++|+.++.+|.+.+|.+ .+|+....
T Consensus 336 ~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 4578999988 677766654 566999888754332222 3456789999999999999998888875 35778888
Q ss_pred eecCCccEEEEEEecC
Q 002496 267 LNYGLERVWAIGYMKS 282 (915)
Q Consensus 267 ~~~~~~~v~~i~~~~~ 282 (915)
+..+.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 8877778889999985
No 209
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.68 E-value=1.9e-15 Score=148.59 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=163.4
Q ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC------eeEEEEeecCCccEEEEEEecCCCCEEEEEECCC
Q 002496 93 KVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
..+.+|.++|..++|+| +...|++||+|.+|.||.+..+ ......+.+|...|-.+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34568999999999999 4567899999999999998754 2345678899999999999998889999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-eEEEEEeCCCCEE
Q 002496 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l 244 (915)
+|.+|++.+++...++. |...|.+++|+.+|. ++++.+.|..|+|||.++++.+..-.+|.+. -..+.|-.+|.++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999888887 999999999999998 7999999999999999999999888777653 4567788888855
Q ss_pred EEEE---cCCcEEEEeCCCcce---eeeeecCCccEEEEEEecCCCEEEE-EecCCeEEEe
Q 002496 245 ITGS---EDGTVRIWHATTYRL---ENTLNYGLERVWAIGYMKSSRRIVI-GYDEGTIMVK 298 (915)
Q Consensus 245 ~~~~---~dg~v~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~v~i~ 298 (915)
-+|. ++..+-+||..+.+. ..++... ..|.---|.+|.+.+.. |-.|+.|+.+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEE
Confidence 4443 467799999766543 3444444 44555567788777665 5567777764
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.3e-13 Score=135.25 Aligned_cols=236 Identities=13% Similarity=0.182 Sum_probs=179.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCce
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDK 91 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~vwd~~~~~~ 91 (915)
....+..+.|+.+...|.+|+.+| -++|+..............-.|.-+-|+ ..++|..+.+ ..+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 445678888999999999999887 6788876654422222222334445554 4566665553 4699999988877
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec---CCccEEEEEEecCCCCEEEEE--ECCCc
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASA--SLDRT 166 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~--~~dg~ 166 (915)
+..+. -...|.++.++. ++|+++-.+. |+|||+++. ++..++.. +...+..+.+++ .+.+++.- ...|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDM-KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccc-eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCce
Confidence 77765 356799999975 4677777764 999999987 44444432 444466666665 45566642 33689
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe-EEEEECCCCcEEEEecCCc--cCeEEEEEeCCCCE
Q 002496 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGHT--HNVSAVCFHPELPI 243 (915)
Q Consensus 167 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~--~~i~~i~~~~~~~~ 243 (915)
|.+||..+-++...+..|++.+.+++|+++|. +|++++..|+ ||++.+.+|+.+..|+... ..|.+++|+|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999999999999999999998 8999999987 7899999999999987433 35889999999999
Q ss_pred EEEEEcCCcEEEEeCCC
Q 002496 244 IITGSEDGTVRIWHATT 260 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~ 260 (915)
|++.|..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998754
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=2.7e-14 Score=139.99 Aligned_cols=232 Identities=15% Similarity=0.215 Sum_probs=176.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC--CeEEEEECCCCeeEE
Q 002496 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCT 135 (915)
Q Consensus 58 ~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 135 (915)
..+..+.|+.+...|.+|+.|| .++|+..............-.|.-+-|+.. +++..+.+ ..+++++.+.+..+-
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 4566777999999999999998 678887765543333333445667777754 56655554 358999988763333
Q ss_pred EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEe--CCCeEE
Q 002496 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGS--DDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~--~dg~i~ 212 (915)
... ....|.++.++. +.|+++-. ..|+|||+++.+.+.++... ..+-..++++++..+.|++.-+ ..|.|.
T Consensus 83 e~~--fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIF--FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEe--cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 332 346799999974 45555544 44999999999988877544 2222345555555554777643 468999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc-EEEEeCCCcceeeeeecCC--ccEEEEEEecCCCEEEEE
Q 002496 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~ 289 (915)
+||..+-+++..+..|.+++.+++|+++|.+||++|..|+ ||+|++.+|+.+..+..+. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999997 7999999999999888664 468899999999999999
Q ss_pred ecCCeEEEe
Q 002496 290 YDEGTIMVK 298 (915)
Q Consensus 290 ~~dg~v~i~ 298 (915)
++.++|.++
T Consensus 237 S~TeTVHiF 245 (391)
T KOG2110|consen 237 SNTETVHIF 245 (391)
T ss_pred cCCCeEEEE
Confidence 999999985
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=132.39 Aligned_cols=235 Identities=16% Similarity=0.270 Sum_probs=168.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEE-EEEcC------CeEEEEECC
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVL-SSSDD------MLIKLWDWE 129 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~-~~~~d------g~i~iwd~~ 129 (915)
...+++|+.|...+++|.++| .+||+.+..+....-..+.+. +.-|-|- .++|+ +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999999999998887 899998764443222222222 2223332 23444 44433 479999954
Q ss_pred CCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EeC
Q 002496 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD 207 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~ 207 (915)
.. .+...+. ...+|.++.+.+ ..+++. ..+.|.+|... +.+.+..+.....+---++..|.....+|+. |..
T Consensus 84 k~-~~i~el~-f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIELS-FNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEEE-eccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 44 4444443 457899999975 445544 46899999987 5555666554332322444555555445555 345
Q ss_pred CCeEEEEECCCCcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCc-EEEEeCCCcceeeeeecCC--ccEEEEEEecC
Q 002496 208 DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~ 282 (915)
-|.|+|-|+...+. ...+..|.+.|.+++.+-+|..+|++|..|+ |||||..+|.++.++..+. ..|.+++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 69999999976554 5778899999999999999999999999998 8999999999999988654 46999999999
Q ss_pred CCEEEEEecCCeEEEecCCC
Q 002496 283 SRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i~~~~~ 302 (915)
+.+||++++.|++.++-.++
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999964433
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.8e-13 Score=131.54 Aligned_cols=237 Identities=15% Similarity=0.252 Sum_probs=169.6
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCC------CeEEEEECCCC
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADD------MFIRVYNYNTM 89 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~d------g~i~vwd~~~~ 89 (915)
...+++|+.|...+++|..+| .+||+++.-+.......+.+.+.-+..--..++|+ +|+.+ +.|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 456699999999999998776 99999876443332222332222222222445554 34332 47999996556
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCC-CEEEE-EECCCcE
Q 002496 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDT-NTFAS-ASLDRTI 167 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~~l~~-~~~dg~i 167 (915)
+++..+. -..+|.++.++++ +|++.-. +.|.+|....+.+....+.....+=--++..|..+ ..|+. |-.-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 6666665 4678999999876 4666554 68999999865455555443322211233444233 33333 4456899
Q ss_pred EEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe-EEEEECCCCcEEEEecC--CccCeEEEEEeCCCC
Q 002496 168 KIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEG--HTHNVSAVCFHPELP 242 (915)
Q Consensus 168 ~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~i~~i~~~~~~~ 242 (915)
.+-|+...+. ...+..|...|.|++.+..|. .+++++..|+ |+|||..+|+.+..++. ....|.+++|||++.
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 9999987665 478899999999999999888 7999999987 79999999999999874 345699999999999
Q ss_pred EEEEEEcCCcEEEEeCCC
Q 002496 243 IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~ 260 (915)
+|+++|..|+|+||.++.
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 999999999999998764
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=138.92 Aligned_cols=253 Identities=11% Similarity=0.112 Sum_probs=165.2
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC----
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM---- 89 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~~~---- 89 (915)
-.+..++||+.-..+|++..|..|+|||-.. +....++. ....|+|++|-|.+ +-|++|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4588999999888899999999999999655 55555553 45679999999975 4577777655 899976421
Q ss_pred ce----------eEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 90 DK----------VKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 ~~----------~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.. +....+| .+|++|.|++||..+++++. |..|.|||.+++ ..........+.+.-+.|+| |+..|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP-dgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP-DGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC-CCCEE
Confidence 11 1112234 58999999999999998875 678999999988 44444444556788999999 99999
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002496 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
+.++-|+..++|...............+.|...+|+|.|.. +|++.+... ++|.+.....-..+.+ ...+..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf-LLf~~sgsp--~lysl~f~~~~~~~~~-~~~~k~---- 325 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF-LLFACSGSP--RLYSLTFDGEDSVFLR-PQSIKR---- 325 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCE-EEEEEcCCc--eEEEEeecCCCccccC-ccccee----
Confidence 99999999999966443333333334568999999999984 444444333 3333321111001110 111111
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCe
Q 002496 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (915)
..-+-|+..-....--..-.+.+.+++|.|.|.+||+....+.
T Consensus 326 -------------~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 326 -------------VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred -------------eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 2222222210000000011356789999999999999776654
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.1e-14 Score=160.09 Aligned_cols=288 Identities=15% Similarity=0.176 Sum_probs=199.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---CCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCC-
Q 002496 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH---TDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKG- 131 (915)
Q Consensus 58 ~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~- 131 (915)
.+-..+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35677889999999999998889999999999988877643 34688888765 4457999999999999974321
Q ss_pred ---eeEEEEeec-------CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcC
Q 002496 132 ---WMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 132 ---~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 200 (915)
.++..-+.+ ..+.-.-+.|... ..+|++++.-..|+|||.........+. +....++++.-+... +.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhh-CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-Cc
Confidence 122221111 1111144567763 4455555557899999998766555443 234455665544333 34
Q ss_pred EEEEEeCCCeEEEEECCCCc---EEEEecCCccC--eEEEEEeCCCC-EEEEEEcCCcEEEEeCCCcceeeee--ecC--
Q 002496 201 YLITGSDDHTAKVWDYQTKS---CVQTLEGHTHN--VSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL--NYG-- 270 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--i~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--~~~-- 270 (915)
.+++|..||.|++||.+... .+...+.|... |..+.+-++|- .|++|+.+|.|++||++.......+ ..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 89999999999999988643 46667778777 99999998765 4999999999999999874322222 222
Q ss_pred -CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeec
Q 002496 271 -LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (915)
Q Consensus 271 -~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (915)
.+.++++..++....+|+|+. +.+.||......+..+..++.. +
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F----------------------------------~ 1347 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF----------------------------------M 1347 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc----------------------------------c
Confidence 125899999999999999998 8888875444433333221111 1
Q ss_pred CCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002496 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 350 ~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
+.....+.+++|+|-.-++|+|. |..+.||...
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 22333457899999888888887 7778888543
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.6e-13 Score=147.48 Aligned_cols=266 Identities=12% Similarity=0.185 Sum_probs=167.9
Q ss_pred EEEeCCCeEEEEECCC-Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCC-Cee-EEEEeecCCccEE
Q 002496 73 VAGADDMFIRVYNYNT-MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEK-GWM-CTQIFEGHSHYVM 146 (915)
Q Consensus 73 ~~~~~dg~i~vwd~~~-~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~-~~~~~~~~~~~i~ 146 (915)
++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +.. ..... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3346689999999964 33 344444 345678899999999987764 478899999873 311 11211 1233467
Q ss_pred EEEEecCCCCEEEEEE-CCCcEEEEECCCCC-C---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002496 147 QVTFNPKDTNTFASAS-LDRTIKIWNLGSPD-P---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~-~dg~i~v~d~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
.++|+| +++.+++++ .++.|.+|++.... . ...+. +.....+++++|+++. ++++...++.|.+||+.+...
T Consensus 84 ~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 84 HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCc
Confidence 899999 777666665 48899999996432 1 22222 2345677889998873 335556679999999976332
Q ss_pred EE-------EecCCccCeEEEEEeCCCCEEEEEEc-CCcEEEEeCCC--cc--eeeeeecC------CccEEEEEEecCC
Q 002496 222 VQ-------TLEGHTHNVSAVCFHPELPIIITGSE-DGTVRIWHATT--YR--LENTLNYG------LERVWAIGYMKSS 283 (915)
Q Consensus 222 ~~-------~~~~~~~~i~~i~~~~~~~~l~~~~~-dg~v~iwd~~~--~~--~~~~~~~~------~~~v~~i~~~~~~ 283 (915)
+. ... .......+.|+|+|++++++.. ++.|.+|++.. ++ .+..+... ......+.++|++
T Consensus 161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 111 2234568999999999988876 89999999873 33 23333221 1122358899999
Q ss_pred CEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002496 284 RRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 284 ~~l~~~~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
++++++.. ++.|.+|. ++.++..+ ... .. .. ....+..+.++
T Consensus 240 ~~lyv~~~~~~~I~v~~--------i~~~~~~~-------~~~-------------------~~--~~-~~~~p~~~~~~ 282 (330)
T PRK11028 240 RHLYACDRTASLISVFS--------VSEDGSVL-------SFE-------------------GH--QP-TETQPRGFNID 282 (330)
T ss_pred CEEEEecCCCCeEEEEE--------EeCCCCeE-------EEe-------------------EE--Ee-ccccCCceEEC
Confidence 99988754 56666531 11111100 000 00 00 01245678999
Q ss_pred CCCCEEEEEc--CCcEEEEEe
Q 002496 363 PNGRFVVVCG--DGEYIIYTA 381 (915)
Q Consensus 363 ~~g~~lav~~--~~~~~i~~~ 381 (915)
|||++|+++. ++.+.+|..
T Consensus 283 ~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 283 HSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred CCCCEEEEEEccCCcEEEEEE
Confidence 9999988876 677888755
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=2.8e-13 Score=144.46 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=186.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNY 86 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~vwd~ 86 (915)
..++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||+++++++ ..+.+.++|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 34444444444557899999999999999999999999999999998654 468899999999999876 5899999999
Q ss_pred CCCceeEEEecC-------CCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 87 NTMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 87 ~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+.+.++.+... ...+..+..+|..+.++..-. .+.|.+.|......................|+| +++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~ 186 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYF 186 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-cccee
Confidence 999999887632 346788888998886665554 488888887765334333333455677899999 77776
Q ss_pred EE-EECCCcEEEEECCCCCCceEEec----CCCCee-------EEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002496 159 AS-ASLDRTIKIWNLGSPDPNFTLDA----HQKGVN-------CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 159 ~~-~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
++ ...+..|-++|..+++....+.. |..++. ...|...+.....++.-....+.+||..+.+.++++.
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~ 266 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP 266 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE
T ss_pred eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE
Confidence 55 45577899999988766554432 222222 2234433333233333334466688989999999999
Q ss_pred CCccCeEEEEEeCCCCEEEEE----EcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecC--CeEEE
Q 002496 227 GHTHNVSAVCFHPELPIIITG----SEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDE--GTIMV 297 (915)
Q Consensus 227 ~~~~~i~~i~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d--g~v~i 297 (915)
....+ ..+..||+++++.+. ...+.|.++|..+.+...++.... .++..+.|+++|+.+.++..+ |.|.+
T Consensus 267 ~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 267 TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp -SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 77666 788999999999988 345789999999998777775432 358999999999987765443 34555
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=4.9e-15 Score=138.10 Aligned_cols=286 Identities=14% Similarity=0.154 Sum_probs=190.7
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
...+.+|.+.|+++.|..++. |.+|...|.|++|++.+......+. .|...|+.+.--|+ ..+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 445668999999999988776 9999999999999999998888888 67789999999987 46889999999999999
Q ss_pred CCCeeEEEEeecCCccEEEEEEec-----CCC---CEEEEEECCC-cEEEEECCCCCCceEE----ecCCCCeeEEEEEe
Q 002496 129 EKGWMCTQIFEGHSHYVMQVTFNP-----KDT---NTFASASLDR-TIKIWNLGSPDPNFTL----DAHQKGVNCVDYFT 195 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p-----~~~---~~l~~~~~dg-~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~ 195 (915)
..+. .. .-|+-.+.++.|.+ +.. ..++.-+... .+++-|......+... .+..+.+.|..+..
T Consensus 85 a~s~-~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 85 AYSA-FI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred cCcc-eE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 8651 11 12333344444443 111 1111111100 0122222111111111 12345566666433
Q ss_pred -CCCcCEEEEEeCCCeEEEEECCCCcEE----------EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC--cc
Q 002496 196 -GGDKPYLITGSDDHTAKVWDYQTKSCV----------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--YR 262 (915)
Q Consensus 196 -~~~~~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~--~~ 262 (915)
.+...++++|..+|.+.+||+.++..+ .....|..+|.++.+.+.-..=++|+.+..+..|++.. +.
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 344446788899999999999987433 33345888999999988655667788888888998753 22
Q ss_pred --eeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCc
Q 002496 263 --LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 263 --~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
...++......+..+...||++.+|+++.|+.++++. ..+.+
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys------------------------------------wrtl~ 284 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS------------------------------------WRTLN 284 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE------------------------------------eccCC
Confidence 2233344456788999999999999999999999842 12222
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002496 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.+.+ +.-|...+++++|+|+..++|.++ |+++-+|++
T Consensus 285 pLAV----LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAV----LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhh----hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2221 234455677888888877777777 777777753
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=8.8e-15 Score=162.00 Aligned_cols=222 Identities=12% Similarity=0.065 Sum_probs=158.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-~dg~i~v 83 (915)
.+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.+++... +....+....++|+|||++|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34567788899999999999999987653 369999998875432 222233345789999999998765 5776555
Q ss_pred E--ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 84 Y--NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 w--d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
| |+.+++ ...+..+...+....|+|+|+.|+.++ .+|...+|+++........+ .+.. .+..|+| +++.++.
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVM 349 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEE
Confidence 5 666655 445556677788999999999877655 56778888765321222222 3333 4578999 8888888
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC--CCCcEEEEecCCccCeEEEEEe
Q 002496 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 161 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~ 238 (915)
.+.++ +.+||+.+++....... .....+.|+|++. +|+.++.++.+.+|.+ .+|..++.+..|.+.+...+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 77654 56699988765432222 2335678999988 7888888888887775 3588888888888888999999
Q ss_pred CC
Q 002496 239 PE 240 (915)
Q Consensus 239 ~~ 240 (915)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=6.6e-16 Score=165.24 Aligned_cols=238 Identities=21% Similarity=0.350 Sum_probs=187.2
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
+.++.+.+|...|.|+.|...|.++++|++|..++||...++.+.....+|.+.|+.++.+.++-+++++|.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34455668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE---Ee-cCCCCeeEEEEEeCCCcCEEE
Q 002496 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LD-AHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~l~ 203 (915)
+..+ .+...+.+|.+.|++++|+| +.+.+.||++++||.+-.-.+.. +. .....+.++.+...+. -++
T Consensus 261 l~~~-~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~--~f~ 332 (1113)
T KOG0644|consen 261 LPDG-APVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD--RFL 332 (1113)
T ss_pred cCCC-chHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc--ccc
Confidence 9998 78889999999999999999 23778899999999871111110 01 1234556667766666 489
Q ss_pred EEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002496 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+++.|+.-..|.+..-. .+...+.-+..+.+. .+.++.-.+-.+++|++.+|.+.+.+.++...+..+.++|-
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 99999988887754211 111111122222222 35666667778999999999999999999999999999998
Q ss_pred CCEEE-EEecCCeEEEec
Q 002496 283 SRRIV-IGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~-~~~~dg~v~i~~ 299 (915)
...++ .++.||...||.
T Consensus 407 n~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred CcHhhhhccCCCceEeee
Confidence 77766 477888888873
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.5e-12 Score=138.90 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=166.2
Q ss_pred CeEEE-EEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002496 28 PWILA-SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+++++ -..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..++... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 44444 4458999999999999999998765544567899999999999999999999999999999987543 568899
Q ss_pred EcCCCCEEEEEE-cCCeEEEEECCCCeeEEEEeec-------CCccEEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCC
Q 002496 107 VHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDP 177 (915)
Q Consensus 107 ~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~~~~~-dg~i~v~d~~~~~~ 177 (915)
+|+||++++++. ..+.+.++|.++. +..+.+.. ...++..+..+| ....++..-. .+.|.+.|....++
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccc
Confidence 999999998765 6899999999987 44443332 234677888888 5665555544 58888888877654
Q ss_pred ce-EEecCCCCeeEEEEEeCCCcCEEEE-EeCCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCC----------C
Q 002496 178 NF-TLDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPE----------L 241 (915)
Q Consensus 178 ~~-~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~----------~ 241 (915)
.. .............|.|+++ |+++ ...++.|.++|..+++.+..+.. |..++..+ .+|. +
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgr--y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGR--YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSS--EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred cceeeecccccccccccCcccc--eeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 43 2223445667888998876 5554 55678999999998887665532 33333322 2222 2
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (915)
...++.-..+.+.+||..+++.+..+....+. .-+..+|+++++.+.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 22222222336677899999999999887666 778889999999887
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1e-14 Score=145.78 Aligned_cols=194 Identities=16% Similarity=0.225 Sum_probs=152.3
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee-
Q 002496 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE- 139 (915)
Q Consensus 61 ~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 139 (915)
.+++|+++|..+++|+.||.+|||++.+...+.....|...|.++.|+|||++|++-+.| ...||+.+++ .......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 679999999999999999999999999888888888999999999999999999999999 8999999988 3333222
Q ss_pred -cCCccEEEEEEecCCC---CE--EEEEECCCcEEEEECCCCCC-----ceEEecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002496 140 -GHSHYVMQVTFNPKDT---NT--FASASLDRTIKIWNLGSPDP-----NFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 -~~~~~i~~~~~~p~~~---~~--l~~~~~dg~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
...-....+.|+. ++ .+ ++.....+.|+.|++...+. ..+.......|.+++.+.+|+ +++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLALGTMD 302 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEEeccC
Confidence 2233456677876 44 22 23333345677766543221 222223456799999999998 89999999
Q ss_pred CeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC
Q 002496 209 HTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~-~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
|.|.|++..+.++++.+ +.|..-|+.+.|+|+.+++++.+.+....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999999888877665 4588899999999999999999888888877654
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=2e-15 Score=151.66 Aligned_cols=231 Identities=11% Similarity=0.137 Sum_probs=192.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (915)
......+.++.+|..|+.|+..|.|-.+|+.+++....+.. ...|..+.|-.+.++++++-. ..++|||-..- -.+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt--ElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT--ELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCCc--EEe
Confidence 33456789999999999999999999999999998888764 457899999998888887754 58999996643 334
Q ss_pred EeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 137 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.+..| ..|..+.|-| .--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+. ++-+|...|+|.+|..
T Consensus 205 Clk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSP 280 (545)
T ss_pred ehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCC
Confidence 44444 5588999999 778899999999999999999999988888888888888888766 7889999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002496 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
...+++..+-.|.++|.+|++.++|.+++|.|.|..++|||+++...+.++.. .-+...+++|..| .||+ +....+.
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~-~~G~~v~ 357 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLAL-SYGDHVQ 357 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceee-ecCCeee
Confidence 99999888888999999999999999999999999999999999887777665 3566778888665 3443 3444566
Q ss_pred Ee
Q 002496 297 VK 298 (915)
Q Consensus 297 i~ 298 (915)
+|
T Consensus 358 iw 359 (545)
T KOG1272|consen 358 IW 359 (545)
T ss_pred ee
Confidence 65
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.4e-13 Score=136.04 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=194.2
Q ss_pred cCCCCEEEEEEcCCCC-eEEEEE-cCCcEEEEECCCCceeEEE------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002496 13 QRSERVKSVDLHPSEP-WILASL-YSGTVCIWNYQSQTMAKSF------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~-~la~~~-~dg~v~iwd~~~~~~~~~~------~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vw 84 (915)
....+|++++|--+++ -++.+. .+..+..+.+....+...+ ....++|..++.. ..+|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 4556788899987665 233443 5666777777665544432 3345667666653 3468888999999999
Q ss_pred ECCCCc----eeEEEecCCCCEEEEEEcCCCCEEE-EEEcC--CeEEEEECCCCeeEEEEeecC-----------CccEE
Q 002496 85 NYNTMD----KVKVFEAHTDYIRCVAVHPTLPYVL-SSSDD--MLIKLWDWEKGWMCTQIFEGH-----------SHYVM 146 (915)
Q Consensus 85 d~~~~~----~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~-----------~~~i~ 146 (915)
..+.+. +...+..+ ..+..+.-++..++|+ +|+.. ..+.+||+.+. .+++..- .-.++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeec
Confidence 988443 23333333 4566677777666554 58887 78999999876 3333321 23467
Q ss_pred EEEEecCC--CCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE
Q 002496 147 QVTFNPKD--TNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 147 ~~~~~p~~--~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
++.|.| + ...|++++.-+.+++||.+.+ +|+..+.....++.++...|+++ ++++|..-|.+..||++.++.+.
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCceeec
Confidence 888988 5 789999999999999999865 46778888899999999999998 79999999999999999998776
Q ss_pred E-ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecC
Q 002496 224 T-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 224 ~-~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.+++...... ..++++-+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccEEEecCC
Confidence 6 8889999999999999999999999999999999986665543322 45566665544
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-13 Score=152.64 Aligned_cols=256 Identities=15% Similarity=0.193 Sum_probs=179.7
Q ss_pred chhhhhhcccCCCCEEEEEEcCCC-CeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAG 75 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~-~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 75 (915)
+..+..+|..|+..|..++.++.. .++++|+.||+|++||...- +...++.....++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 345667788899999999988866 99999999999999997642 1223344457889999999999999999
Q ss_pred eCCCeEEEEECCC--Cce-----eEEEecC-CCC-EEEEEEcC-CC-CEEEEEEcCCeEEEEECCCCeeEE-EEeecCCc
Q 002496 76 ADDMFIRVYNYNT--MDK-----VKVFEAH-TDY-IRCVAVHP-TL-PYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSH 143 (915)
Q Consensus 76 ~~dg~i~vwd~~~--~~~-----~~~~~~~-~~~-i~~l~~s~-~~-~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 143 (915)
+.||.|++.+++- .+. ......+ .+. +..-+|.. .+ ..++.+...+.|..||++.....- .......+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999998875 211 1122222 222 33334433 22 367788888999999998652111 11222347
Q ss_pred cEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCC--cCEEEEEe-CCCeEEEEECCCC
Q 002496 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGD--KPYLITGS-DDHTAKVWDYQTK 219 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~l~~~~-~dg~i~iwd~~~~ 219 (915)
.|++++.+| .++.+++|+..|.+.+||++-+.++.... ++..++..+..+|-.. ...+.+++ ..+.|.+|++.+|
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 799999999 88999999999999999999887776653 3446777777776544 32334444 5788999999998
Q ss_pred cEEEEecCC-----------------ccC--eEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 220 SCVQTLEGH-----------------THN--VSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 220 ~~~~~~~~~-----------------~~~--i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+...+... ... ....++...+.++++|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 776655422 011 11223333456899999999999999654
No 226
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=3.6e-13 Score=150.88 Aligned_cols=262 Identities=14% Similarity=0.171 Sum_probs=188.3
Q ss_pred EECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCCCE
Q 002496 42 WNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
|+ ..|.++..+..|...|..++.++.. .++++||.||+|++||.... +...++......+.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 4678888888899999888888765 99999999999999998632 222333445678999999999999
Q ss_pred EEEEEcCCeEEEEECCCC--ee----EEEEe--ecCCccEEEEEEecCCCC-EEEEEECCCcEEEEECCCCCCceEE--e
Q 002496 114 VLSSSDDMLIKLWDWEKG--WM----CTQIF--EGHSHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTL--D 182 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~--~~----~~~~~--~~~~~~i~~~~~~p~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~--~ 182 (915)
+++++.||.|.+.+++.. .. +.... ......+..-+|...... .++.+...+.|..||+++.....++ .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 11 11111 112222333345443445 7888888999999999887655544 3
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCC---EEEEE-E-cCCcEEEE
Q 002496 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELP---IIITG-S-EDGTVRIW 256 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~~~~---~l~~~-~-~dg~v~iw 256 (915)
...+.|++++.+|.++ ++++|+..|.+.+||++-+.++..+. ++..+|..++.+|-.+ ..+++ + ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~--WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN--WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce--EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4567899999999887 99999999999999999888887765 3456788888777433 44444 4 56789999
Q ss_pred eCCCcceeeeeecCC-----------------c--cEEEEEEecCCCEEEEEecCCeEEEecCCCccee
Q 002496 257 HATTYRLENTLNYGL-----------------E--RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA 306 (915)
Q Consensus 257 d~~~~~~~~~~~~~~-----------------~--~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~ 306 (915)
++.+|....++.... . .....++...+..+.+|+.|+.|+.|....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999987665554331 0 1122334444668889999999999876555444
No 227
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.2e-14 Score=145.12 Aligned_cols=195 Identities=15% Similarity=0.122 Sum_probs=150.8
Q ss_pred EEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec-
Q 002496 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA- 97 (915)
Q Consensus 19 ~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 97 (915)
.+++|+++|..|++|+.||+++||++.+...+.....|.+.|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999998888888888899999999999999999999999 899999999966655542
Q ss_pred -CCCCEEEEEEcCCC---CEE-E-EEEcCCeEEEEECCCCee----EEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 98 -HTDYIRCVAVHPTL---PYV-L-SSSDDMLIKLWDWEKGWM----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 98 -~~~~i~~l~~s~~~---~~l-~-~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+-....+.|+.++ .+. + .-..-+.|..|++..... ...........|.+++.++ ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 22345667787766 222 2 223345566655432111 1111122234699999999 99999999999999
Q ss_pred EEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002496 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
.+++..+.+..+.. +.|...|+.+.|+|+.+ ++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 99999877665544 57889999999999887 68888888887777654
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.9e-13 Score=132.06 Aligned_cols=190 Identities=16% Similarity=0.260 Sum_probs=141.0
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC----
Q 002496 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---- 175 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~---- 175 (915)
..++.++|++.-..++++..|-.|++||-... ............|+|++|-|.....|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 45788999997767889999999999997763 33333334456799999999778888888864 5889976421
Q ss_pred CC----------ceEEecCCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002496 176 DP----------NFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 176 ~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
.+ +..-.+| .+|+++.|.++|. .+++++ .+..|.|||..++..+.......+.++-+.|||||.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1122233 6899999999987 466655 57889999999988766554456778899999999999
Q ss_pred EEEEcCCcEEEEeCCC-cceeeeeecCCccEEEEEEecCCCEEEEEecCCeE
Q 002496 245 ITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v 295 (915)
++++-|+..++|.... .....- ....++|...+|+|.|++|...+.....
T Consensus 254 faAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred EEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEcCCce
Confidence 9999999999996443 333332 2334699999999999998876654433
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.2e-14 Score=148.60 Aligned_cols=168 Identities=24% Similarity=0.326 Sum_probs=138.3
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcC--CCCEEEEEEcCCeEEE
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHP--TLPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~dg~i~i 125 (915)
+-+.+.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..+++..+. +|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345688999999999999999999999999999999998888877764 8999999999998 4568899999999999
Q ss_pred EECCC---------CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE----------EecCCC
Q 002496 126 WDWEK---------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----------LDAHQK 186 (915)
Q Consensus 126 wd~~~---------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~----------~~~~~~ 186 (915)
+|+.. .......+..|...|..++-.|..++.|.+++.||+|+-+|++....... +...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 22344556678889999999996679999999999999999987432211 111223
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002496 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
...|+.++|.... +|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~-~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPY-YLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCc-eEEecCCCchhhhhhhh
Confidence 4578899988665 99999999999999964
No 230
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=2.7e-13 Score=131.28 Aligned_cols=245 Identities=18% Similarity=0.298 Sum_probs=175.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-----eeEEEEecCC------------CEEEEEEeCCCC--EEEE
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTEL------------PVRSAKFVARKQ--WVVA 74 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~l~~s~~~~--~l~~ 74 (915)
..+-|.++.|.-+|.+||+|..+|.|.+|.-.... ....++.|.. .|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999999743321 2334444532 588899998764 5777
Q ss_pred EeCCCeEEEEECCCCce-----------------------------------eEEE-ecCCCCEEEEEEcCCCCEEEEEE
Q 002496 75 GADDMFIRVYNYNTMDK-----------------------------------VKVF-EAHTDYIRCVAVHPTLPYVLSSS 118 (915)
Q Consensus 75 ~~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~i~~l~~s~~~~~l~~~~ 118 (915)
.+.|.+|++|-+..... .+.+ .+|+-.|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999997642111 0111 2577779999999999877765
Q ss_pred cCCeEEEEECCCCeeEEEEe--ecC-----CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc----eEE------
Q 002496 119 DDMLIKLWDWEKGWMCTQIF--EGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTL------ 181 (915)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~--~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~------ 181 (915)
+|-.|-+|+++-......+. ..+ ..-|++..|+|...+.|+-++..|+|++.|++..... ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56789999987432333222 222 2358899999988999999999999999999853211 111
Q ss_pred ------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-CCcEEEEecCCcc------------C---eEEEEEeC
Q 002496 182 ------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTH------------N---VSAVCFHP 239 (915)
Q Consensus 182 ------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~------------~---i~~i~~~~ 239 (915)
..--..|..+.|+++|+ |+++-. --+|++||+. ..+++.++..|.. . -..++|+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGr--yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGR--YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCc--EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11234678899999987 666644 4689999994 4566666654421 1 24578999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCcc
Q 002496 240 ELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++++|+....+++++...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999976654
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.2e-12 Score=144.63 Aligned_cols=235 Identities=13% Similarity=0.076 Sum_probs=162.0
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|...... +.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3699999765543 445556778999999999999987643 45799999988764332 223334557899999998
Q ss_pred EEEE-EcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECC-Cc--EEEEECCCCCCceEEecCCCC
Q 002496 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.+| .|.+||+.++ ...+.. .+...+....|+| +++.|+..+.+ +. |.++|+.++.. ..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg-~~~~lt-~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC-CEEEcc-CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 8865 4344 5899999887 444433 3445678899999 78877766654 44 55557766543 344434445
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc---EEEEeCCCc
Q 002496 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT---VRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~---v~iwd~~~~ 261 (915)
.....|+|+|+ +++..+.+ ..|.+||+.++... .+... .......|+|||+.|+.++.++. +.++++ +|
T Consensus 333 ~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 333 NQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred ccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 56788999988 56554432 45888999877643 33322 22346789999999999887764 677776 46
Q ss_pred ceeeeeecCCccEEEEEEecC
Q 002496 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 666667666677888888873
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.3e-13 Score=138.46 Aligned_cols=276 Identities=12% Similarity=0.150 Sum_probs=203.9
Q ss_pred cCCCCEEEEEEcCCCCeE-EEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002496 13 QRSERVKSVDLHPSEPWI-LASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~l-a~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
.|+..-+.|..+|||+|+ |+|.+.-.|++||+..-.+...-......|.-.-.+-|-..++.-..|.+|-+-.-- |.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 578888999999999975 567778899999987765544333334566666667777777777788887665422 211
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEE
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d 171 (915)
..+. -+..-+.|+++.-..-|++++....|+-++++.| .....+....+.+.++..++ -..+|++|+.+|.|.+||
T Consensus 128 -y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 128 -YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWD 203 (703)
T ss_pred -eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecC-ccceEEecccCceEEEec
Confidence 1111 1223345666654444566666668999999998 66667777778899999999 788999999999999999
Q ss_pred CCCCCCceEEec------CCC-----CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-CCccCeEEEEEeC
Q 002496 172 LGSPDPNFTLDA------HQK-----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHP 239 (915)
Q Consensus 172 ~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~i~~~~ 239 (915)
.+....+.++.. +.+ .|+++.|+.+|- .+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 988766655532 222 389999987665 69999999999999999988766543 3345788899977
Q ss_pred C--CCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 240 E--LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 240 ~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
. ++.|++.. ...++|||-.+|+....+... ..+..+|+-|++.++.++.+++.+..
T Consensus 282 ~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 5 44566554 558999999999988877765 45899999999999999888776654
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.3e-12 Score=145.15 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=160.1
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.+||... ...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999754 444556667788999999999999998774 3479999998876543 3334455568899999998
Q ss_pred EE-EEEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CCc--EEEEECCCCCCceEEecCCCC
Q 002496 114 VL-SSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+| .|++||+.++ ... .+..+.......+|+| +++.|+.++. +|. |+++++.+++.. .+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g-~~~-~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSR-QLT-RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCC-CeE-ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 76 445555 5999999887 333 3344545556789999 7877776653 444 677777666533 33333344
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCc
Q 002496 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~ 261 (915)
....+|+|+|+ +|+..+.+ ..|.+||+.+++.. .+. +........|+|+|++|+..+.+ +.|.+++.. +
T Consensus 338 ~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 45789999998 56554433 26999999877654 333 22234567999999988876653 357788874 4
Q ss_pred ceeeeeecCCccEEEEEEec
Q 002496 262 RLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~ 281 (915)
.....+..+.+.+...+|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 45555555556667777776
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=144.02 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=191.6
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCC--CCEEEEEEcCCeEEE
Q 002496 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~--~~~l~~~~~dg~i~i 125 (915)
+...+..|.+.|..+.|+..|..|++|+.|..|.+||+.+++....+. +|...|..-.|-|. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 445678899999999999999999999999999999999988777664 78888887788774 457999999999999
Q ss_pred EECCCCeeE--EEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCC---CeeEEEEEeCC
Q 002496 126 WDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK---GVNCVDYFTGG 197 (915)
Q Consensus 126 wd~~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~---~v~~~~~~~~~ 197 (915)
-.+.....+ ...+..|.++|.-++.-|.....|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876533222 345667999999999999888999999999999999999877654442 2223 45677777766
Q ss_pred CcCEEEEEeCCCeEEEEECCCCc------EEEEec------CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC--c--
Q 002496 198 DKPYLITGSDDHTAKVWDYQTKS------CVQTLE------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--Y-- 261 (915)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~--~-- 261 (915)
.. .+++|+.|..+++||.+.-. .+..+. .....|++++++.++.-+++.-.|-.|+++.... |
T Consensus 294 t~-~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TN-EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred cc-ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 79999999999999986421 122222 2234699999998777677767788899995332 2
Q ss_pred --------ceee-eeecCC--ccEEEEE-EecCCCEEEEEecCCeEEEecCCC
Q 002496 262 --------RLEN-TLNYGL--ERVWAIG-YMKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 262 --------~~~~-~~~~~~--~~v~~i~-~~~~~~~l~~~~~dg~v~i~~~~~ 302 (915)
..+. .+++|. ..|..+- |-|...++++|++-|.|.||..+.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 1122 245553 2355555 568889999999999999985443
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=7.5e-13 Score=146.37 Aligned_cols=235 Identities=13% Similarity=0.026 Sum_probs=157.0
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46778886 454555566677889999999999999887642 469999999887644 3334456678999999998
Q ss_pred EE-EEEcCCeEEEEE--CCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CCcEEEEEC--CCCCCceEEecCCCC
Q 002496 114 VL-SSSDDMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNL--GSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~i~v~d~--~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|...+|. ..++ . ...+..+........|+| +++.++..+. +|...+|.+ .++.. ..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 87 456677766664 4444 2 334444555567789999 7777765553 456666654 44433 223222333
Q ss_pred eeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEEEEeCCCc
Q 002496 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
.....|+|+|+ +|+..+.++ .|.+||+.+++...... . .......|+|+|+.|+.++.++ .+.+.+. ++
T Consensus 330 ~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 330 NTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred cCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 45678999988 566655443 69999998876543322 2 2346789999999888877544 3555665 46
Q ss_pred ceeeeeecCCccEEEEEEecC
Q 002496 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 656556555566777788774
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.55 E-value=4.9e-12 Score=129.31 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=187.1
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC----------
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---------- 78 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---------- 78 (915)
..+....-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|++++|.+-+..
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccC
Confidence 3344456689999999999999987755 49999988776555554 3 458999999999999986543
Q ss_pred -----CeEEEEECCCCceeEEEecCCCC--EE-EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC-CccEEEEE
Q 002496 79 -----MFIRVYNYNTMDKVKVFEAHTDY--IR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVT 149 (915)
Q Consensus 79 -----g~i~vwd~~~~~~~~~~~~~~~~--i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~ 149 (915)
+.+.+||..+|..+..+.....+ .+ -+.|+-+..+++-... ..++|+++ ++......+..- ...|....
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFs 180 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFS 180 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEE
Confidence 35999999999999998866655 55 6889999888775433 46899997 331222111111 24578888
Q ss_pred EecC-CCCEEEE-----EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe-----------CCCeEE
Q 002496 150 FNPK-DTNTFAS-----ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-----------DDHTAK 212 (915)
Q Consensus 150 ~~p~-~~~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----------~dg~i~ 212 (915)
|+|. +...|+. .+..+++++|.+..++.+.+-.-.+..-..+.|.+.|+ ++++-- ....++
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~--~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK--YLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc--eEEEEEEEeeecccceeccceEE
Confidence 9983 3333443 35578899999986665544433333445677888777 444321 235688
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE--cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
+++++...+... ....++|..++|.|.++.+++.+ .+..+.++|++.. +...+ +...=..+.|+|.++++++++
T Consensus 259 l~~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 259 LLRITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred EEeeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEec
Confidence 888874433332 25678999999999988666544 6778999998754 33332 334446788999999988865
Q ss_pred cC
Q 002496 291 DE 292 (915)
Q Consensus 291 ~d 292 (915)
-+
T Consensus 335 F~ 336 (561)
T COG5354 335 FD 336 (561)
T ss_pred CC
Confidence 43
No 237
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.54 E-value=2.3e-08 Score=118.82 Aligned_cols=234 Identities=12% Similarity=0.141 Sum_probs=151.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCC----eEEEEECCCCc---eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002496 58 LPVRSAKFVARKQWVVAGADDM----FIRVYNYNTMD---KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 58 ~~v~~l~~s~~~~~l~~~~~dg----~i~vwd~~~~~---~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
..+...+|.+..+.+.+..... .|.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3566677777665544433322 23333332222 222222 23568999999999999999999999999
Q ss_pred E----ECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC---------------C--------CCCc
Q 002496 126 W----DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------------S--------PDPN 178 (915)
Q Consensus 126 w----d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~---------------~--------~~~~ 178 (915)
. +..+. .......-...|.+++||| |..+++..+.++++.+.+.. . |+..
T Consensus 102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDED--EIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCc--eeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 55543 3344444567899999999 99999999999998876521 0 1111
Q ss_pred eEEec------------------------CCCCeeEEEEEeCCCcCEEEEEeC------CCeEEEEECCCCcEEEEecCC
Q 002496 179 FTLDA------------------------HQKGVNCVDYFTGGDKPYLITGSD------DHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 179 ~~~~~------------------------~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.+|.+ ....-..++|-.||. |+++.+- -+.+++|+-. |....+-..-
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE--YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc--EEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 11100 112334566655554 8888764 2579999954 7654444433
Q ss_pred ccCeEEEEEeCCCCEEEEEEc---CCcEEEEeCCCcceeeeeec----CCccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
.+--.+++|.|.|++|++.-. ...|.+|. ++|-....+.. ....|..+.|++++..||+...+. |.+|.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 333457899999999998764 34688888 45554444433 346799999999999999988666 77763
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5.3e-12 Score=130.81 Aligned_cols=271 Identities=11% Similarity=0.110 Sum_probs=180.5
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-----C-----CCeEEEE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-----D-----DMFIRVY 84 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-----~-----dg~i~vw 84 (915)
+.++...++|++|+++|.+. +..|.|++..++..+.+.... .+.++.|+|.|.+|.+-- . .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578899999999888875 678999998888644443322 789999999999987631 1 2457899
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEE------------------
Q 002496 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM------------------ 146 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~------------------ 146 (915)
++.++.....+......-++..|++|..+.+ --..+.+.+|++.+.......+ |...|.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 9988554444432222225677777654322 1122356666655432222221 222333
Q ss_pred ----------------------------------EEEEecCCCCEEEEEECC-----------CcEEEEECCCCCCceEE
Q 002496 147 ----------------------------------QVTFNPKDTNTFASASLD-----------RTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 147 ----------------------------------~~~~~p~~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~ 181 (915)
.+.|++.+..+|+.++.| .++++.++.+......+
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 344554333333333321 23555555422222222
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeC
Q 002496 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHA 258 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~ 258 (915)
...++|.++.|++++..--++-|..-..+.|||++ +.++..+. .++-.++-|+|.|++|+.+|-+ |.|-+||+
T Consensus 268 -~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 268 -LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 34789999999999987556667778899999987 67776664 5667789999999999887754 78999999
Q ss_pred CCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 259 TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
.+.+++..+.... -+-+.|+|||+++++++..-.+++
T Consensus 344 ~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred cchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence 9988888776653 356889999999999998877777
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=144.66 Aligned_cols=222 Identities=9% Similarity=0.017 Sum_probs=154.6
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg--~i~ 82 (915)
+.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445566778999999999999987643 3579999998886433 22233445678999999998865 3344 699
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+||+.+++... +..+...+....|+|+|+.|+.++.+ | .|.++|+.++ .... +..+........|+| +++.++
T Consensus 271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~-lt~~~~~~~~~~~Sp-DG~~Ia 346 (429)
T PRK03629 271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQR-ITWEGSQNQDADVSS-DGKFMV 346 (429)
T ss_pred EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEE-eecCCCCccCEEECC-CCCEEE
Confidence 99998876544 33344567889999999998877764 3 4555577766 2222 233344456789999 788877
Q ss_pred EEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe---EEEEECCCCcEEEEecCCccCeE
Q 002496 160 SASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT---AKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.+ ..|.+||+.++... .+.. ........|+|+|. +|+.++.++. +.++++. |.....+..|.+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGT--MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCC--EEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 76543 35888999877643 3332 22334678999988 5777766653 6777874 666677777888888
Q ss_pred EEEEeCC
Q 002496 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 8999873
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4e-12 Score=141.42 Aligned_cols=234 Identities=11% Similarity=0.043 Sum_probs=161.5
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378999974 4455667778889999999999999988764 468999999887653 44456667788999999998
Q ss_pred EE-EEEcCCe--EEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002496 114 VL-SSSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|. |.+||+.++ .. ..+..+........|+| +++.++..+. +| .|+++|+.++.. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~-~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSG-TT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCC-ce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 76 4455554 777898877 33 33445556667899999 7887776663 33 688889876554 344434555
Q ss_pred eeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC------CcEEEEeC
Q 002496 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHA 258 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d------g~v~iwd~ 258 (915)
+....|+|+++ .|+....+ ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+ ..+.++|+
T Consensus 336 ~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 336 YSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 67788999998 56555432 3688889765443 3333 22346788999999988765543 25778887
Q ss_pred CCcceeeeeecCCccEEEEEEecC
Q 002496 259 TTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~ 282 (915)
..+.. ..+.. .+.+...+|+|-
T Consensus 412 ~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCce-EEccC-CCCccCcccCCC
Confidence 65544 34432 234566777763
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6.9e-12 Score=129.18 Aligned_cols=337 Identities=15% Similarity=0.178 Sum_probs=212.7
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEC
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----------DMFIRVYNY 86 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----------dg~i~vwd~ 86 (915)
-+-+.|||.|.||++--..| |.+|--++-..++.|. |. .|.-+.|||+.++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999988776 8899877766666665 54 4889999999999998653 258999999
Q ss_pred CCCceeEEEecCCC--CE-EEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 87 NTMDKVKVFEAHTD--YI-RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 87 ~~~~~~~~~~~~~~--~i-~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.||...+.|....+ .+ .-..||.|+++++.-..+ .|.||+..+- .+...-.-....|....|+| .+++||--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~Kslki~gIr~FswsP-~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKKSLKISGIRDFSWSP-TSNLLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeecccccCCccccCcccCC-CcceEEEEcc
Confidence 99999888875222 22 346899999999977775 6999987763 22222122335688899999 6777765332
Q ss_pred -----CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe----------CCCeEEEEECCCCcEEEEecCC
Q 002496 164 -----DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS----------DDHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 164 -----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~ 228 (915)
-.++.+..+.+++.+++-..+.-.-..+.|-.+|+ +|+.-- .-..+.|+.++........-..
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd--yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD--YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc--EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 12455666666655554444433334566666666 666532 1123556666554432222224
Q ss_pred ccCeEEEEEeCCCCEEEEEEc---CCcEEEEeCCC-c---ceeeeeecCCccEEEEEEecCCCEEEEEec---CCeEEEe
Q 002496 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATT-Y---RLENTLNYGLERVWAIGYMKSSRRIVIGYD---EGTIMVK 298 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~v~i~ 298 (915)
...|...+|-|.|..+++-+. ..++.+|.+.+ . +++..+. ......+.|+|.|++++++.- .|.+.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 567889999999987776543 34688888763 2 2333333 245678999999999998653 3333331
Q ss_pred cCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc------
Q 002496 299 IGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG------ 372 (915)
Q Consensus 299 ~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~------ 372 (915)
+.+ ..+-+... .......+.+.|.|.|+|+++++
T Consensus 523 ----------D~~------------------------~a~~k~~~------~~eh~~at~veWDPtGRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 523 ----------DTD------------------------YADLKDTA------SPEHFAATEVEWDPTGRYVVTSSSSWRHK 562 (698)
T ss_pred ----------ecc------------------------hhhhhhcc------CccccccccceECCCCCEEEEeeehhhhc
Confidence 110 00000000 00112346889999999999885
Q ss_pred -CCcEEEEEeeccc--ccCccceeEEEEecCCcEE
Q 002496 373 -DGEYIIYTALAWR--NRSFGSALEFVWSSDGEYA 404 (915)
Q Consensus 373 -~~~~~i~~~~~~~--~~~~~~~~~~~~s~~g~~l 404 (915)
+..+.+|+..+.- ....+....+.|-|.--.+
T Consensus 563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~ 597 (698)
T KOG2314|consen 563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSL 597 (698)
T ss_pred cccceEEEEeecHHHHHHHHHHHHhhccCCCCCcc
Confidence 5677788766432 1222334455666544333
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.2e-11 Score=124.31 Aligned_cols=322 Identities=16% Similarity=0.256 Sum_probs=200.3
Q ss_pred CCcEEEEECCCCcee-EEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002496 36 SGTVCIWNYQSQTMA-KSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~-~~~~~--~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
.-.+.+|+....... ..+.. ...+++..+++++|++++.+ .+..+.|++..++..+.+.... .+.++.|+|-|.
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence 334788876542222 22322 24557888999999887776 4568999999888654444432 789999999999
Q ss_pred EEEEE-----Ec-----CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe
Q 002496 113 YVLSS-----SD-----DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (915)
Q Consensus 113 ~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 182 (915)
+|.+= .. .-.+.+|+++++............. ++..|++ |.. ++.--..+.+++|++.+.+.+. -.
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~-~k 162 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ-HK 162 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc-chh-hhhhhhcceEEEEecCCcccee-ee
Confidence 88742 11 2357799999852222222222332 5788887 443 4433446789999998754332 23
Q ss_pred cCCCCeeEEEEEeCCCcCEEEE-----EeCCCeEEEEECCCCcEEEEe---cCCccCeEEEEEeCCCC-EEEEEE--cC-
Q 002496 183 AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELP-IIITGS--ED- 250 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~-~l~~~~--~d- 250 (915)
-|...++.+.++|.+....+++ .+.-+.|+||.+.....-..+ .-....=..+.|++-|. +|+..+ -|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 4678899999999877656665 345578999987632211111 11122234577888776 233222 22
Q ss_pred --------CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEE--ecCCeEEEecCCCcceeEecCCCcEEEEeeC
Q 002496 251 --------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG--YDEGTIMVKIGREEPVASMDNSGKIIWAKHN 320 (915)
Q Consensus 251 --------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~ 320 (915)
..+++.++......-.+. ..++|.++.|+|+++-+++. ..--.+.| ++..|+.++.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvti----------fnlr~~~v~d--- 308 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTI----------FNLRGKPVFD--- 308 (566)
T ss_pred CCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEE----------EcCCCCEeEe---
Confidence 357888877333333332 35899999999999877763 33334444 3334444322
Q ss_pred ceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccCc---ccee
Q 002496 321 EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSF---GSAL 393 (915)
Q Consensus 321 ~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~---~~~~ 393 (915)
+. +..-..+-|+|.|+++++++ .|.+-+|+....+.... ...+
T Consensus 309 ---------------f~---------------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt 358 (566)
T KOG2315|consen 309 ---------------FP---------------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT 358 (566)
T ss_pred ---------------CC---------------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce
Confidence 22 22335889999999999987 57889998877443222 2346
Q ss_pred EEEEecCCcEEEEec
Q 002496 394 EFVWSSDGEYAVRES 408 (915)
Q Consensus 394 ~~~~s~~g~~l~~~~ 408 (915)
-+.|+|||+++++.+
T Consensus 359 ~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTAT 373 (566)
T ss_pred EEEEcCCCcEEEEEe
Confidence 678889998877665
No 243
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=8.5e-12 Score=133.30 Aligned_cols=442 Identities=12% Similarity=0.128 Sum_probs=267.1
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC------------CEEEEEeCCCeEEE
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK------------QWVVAGADDMFIRV 83 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~------------~~l~~~~~dg~i~v 83 (915)
..-.++.|+|.| ++|.|+ ...|.+-|..+-+.++.++.|...|+.+.|.|-. -.||++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 346789999987 577776 4579999999999999999999999999998831 24677778999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCC---C-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
||...+..+..+..|.+++..++|-+. . ..|+.-....+|.+|+..+|...-+. ........|+.+.|-+.+.|.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY-DYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc-ccCCcceeeeeeCCCCcceEE
Confidence 999999888889999999999999763 3 35666677789999999998443333 223355777999998888888
Q ss_pred EEECCCcEEEEECCCCC----C--ceEE-ecCCC-------------------C------eeEEEEEeCCCcCEEEEEeC
Q 002496 160 SASLDRTIKIWNLGSPD----P--NFTL-DAHQK-------------------G------VNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~~~----~--~~~~-~~~~~-------------------~------v~~~~~~~~~~~~~l~~~~~ 207 (915)
.-+..|.+.+.+.-..+ + ...+ ..|.. . ...++|+|.-++ ++....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~~ 250 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFITF 250 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEEe
Confidence 88888888877653211 1 1111 11111 0 112345666554 333445
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC--EEEEEEcCCcEEEEeCCCcce----------------eeeeec
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRIWHATTYRL----------------ENTLNY 269 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~v~iwd~~~~~~----------------~~~~~~ 269 (915)
.+.+.++|++-..++..+.-..+.+.-+.+-|+++ .|+++..||.+.+|-.+.... ...+..
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 67799999998888887776677677777877664 799999999999997543111 111111
Q ss_pred C-CccEEEEEEecC-CCEEEEEecCCeEEEecCCCcce------------eEecCCCcEEEEeeCceEEEEeeeccccee
Q 002496 270 G-LERVWAIGYMKS-SRRIVIGYDEGTIMVKIGREEPV------------ASMDNSGKIIWAKHNEIQTVNIKSVGADYE 335 (915)
Q Consensus 270 ~-~~~v~~i~~~~~-~~~l~~~~~dg~v~i~~~~~~~~------------~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~ 335 (915)
. .-++......|. ...+++-..+|.+.+|..+...+ ..++.++.......+....+...+ .
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-----~ 405 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-----S 405 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC-----C
Confidence 0 112222333343 44555566677777764332211 112222222211111111111000 0
Q ss_pred ccCCceeeeeeeecCCcccCCceEEECCCC-------CEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCc
Q 002496 336 VTDGERLPLAVKELGTCDLYPQSLKHNPNG-------RFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGE 402 (915)
Q Consensus 336 ~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g-------~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~g~ 402 (915)
.+.|..+.. ... --.++...--|.| .++|+|+ .|++.+++..... ..+.+.+.++-|-....
T Consensus 406 h~sGs~~~~-~~p----~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss 480 (1062)
T KOG1912|consen 406 HSSGSTCVR-MRP----MPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS 480 (1062)
T ss_pred CCCCceeee-ccc----CcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee
Confidence 112221110 000 0011112222222 2678888 8999999887653 23445667777766655
Q ss_pred EEEEecC----------CeEEEeccCccceeeeec----Ccccceee----cCcEEEEeeCC-eEEEEeccCCcEEEEEE
Q 002496 403 YAVRESS----------SKIKIFSKNFQEKRSVRP----TFSAERIY----GGTLLAMCSND-FICFYDWAECRLIRRID 463 (915)
Q Consensus 403 ~l~~~~~----------~~i~v~~~~~~~~~~~~~----~~s~~~i~----~g~~La~~~~~-~v~~~d~~~~~~i~~~~ 463 (915)
++-...+ +.+.|-++...-.+.++. .-+|-.+. .+++|++.-.+ -+.+||+.+..+++...
T Consensus 481 lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 481 LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred EEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHh
Confidence 5443321 224444432221121221 11111111 48899999998 99999998887766544
Q ss_pred --cc-ccEEEEc
Q 002496 464 --VT-VKNLYWA 472 (915)
Q Consensus 464 --~~-i~~v~~s 472 (915)
-+ ++.+.|+
T Consensus 561 ~a~P~it~leWs 572 (1062)
T KOG1912|consen 561 LALPLITVLEWS 572 (1062)
T ss_pred hcCCcEEEEeec
Confidence 23 7888888
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.5e-12 Score=144.08 Aligned_cols=222 Identities=11% Similarity=0.085 Sum_probs=149.8
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCCeEEEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVY 84 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg~i~vw 84 (915)
+.+..+.+.+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4456678889999999999999987652 359999998886543 3434456778999999998875 5667765665
Q ss_pred --ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEE--CCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 85 --NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 85 --d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
|..++. ...+..+........|+|||+.|+..+. +|...+|. +.++ ...... .+........|+| +++.++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-AAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-ceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 454443 4555555556677899999998886664 45555664 4454 222222 2223345678999 888888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-CC--eEEEEECCCCcEEEEecCCccCeE
Q 002496 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.++ .|.+||+.+++... +.. ........|+|+++ .|+.++. .| .+.+.+. ++.....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC--EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 776654 59999998876433 322 23346789999988 4555443 33 3566666 4666666665666777
Q ss_pred EEEEeCC
Q 002496 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 7888874
No 245
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=6.5e-11 Score=121.28 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=165.3
Q ss_pred EEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc
Q 002496 40 CIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (915)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 119 (915)
.+|+..+...-..+....-++..++|||.|.+|++....| |.+|....+..+..+. | ..|..+.|||.++||.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 3455555444444555667899999999999999876655 8899988777666665 3 35899999999999997654
Q ss_pred C---------------CeEEEEECCCCeeEEEEeecCCcc--EE-EEEEecCCCCEEEEEECCCcEEEEECCCCCCc-eE
Q 002496 120 D---------------MLIKLWDWEKGWMCTQIFEGHSHY--VM-QVTFNPKDTNTFASASLDRTIKIWNLGSPDPN-FT 180 (915)
Q Consensus 120 d---------------g~i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~-~~ 180 (915)
. ..+.+||+.++ .+...+.....+ .+ -+.|+- +..+++-- ....++|+++ ++... ..
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCc
Confidence 3 35999999998 666666655444 33 567776 55555443 3457899997 33211 11
Q ss_pred Ee-cCCCCeeEEEEEeCCCcCEEEE-----EeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE------
Q 002496 181 LD-AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS------ 248 (915)
Q Consensus 181 ~~-~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~------ 248 (915)
+. ....++....|+|.+++..|+. ++..+++++|.+..+..+.+..-....=..+.|.+.|.++++-.
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1236788889999877666554 45678999999987776665543343445688999998776422
Q ss_pred -----cCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 249 -----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 249 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
....++++++.. +-+.....-.++|...+|.|.++.+++.+
T Consensus 248 nKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 248 NKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeEEe
Confidence 124578888763 32332224468999999999998877644
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=4.6e-13 Score=137.29 Aligned_cols=137 Identities=19% Similarity=0.433 Sum_probs=113.9
Q ss_pred CCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCC--------------C--------------ceeEEEEecCCCEEEEEE
Q 002496 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQS--------------Q--------------TMAKSFEVTELPVRSAKF 65 (915)
Q Consensus 15 ~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~--------------~--------------~~~~~~~~~~~~v~~l~~ 65 (915)
..+|+|+.|-|.+. .++++-.+|.+.+||..- + ..+..+....++|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999554 455555699999997521 1 111222233457889999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccE
Q 002496 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV 145 (915)
Q Consensus 66 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 145 (915)
+|||++||+.+.||.++|||+.+.+.+..++.--+...|++|||||++|++|++|-.|.||.+... ++...-.+|.+.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence 999999999999999999999998888888877788999999999999999999999999999987 6777778999999
Q ss_pred EEEEEec
Q 002496 146 MQVTFNP 152 (915)
Q Consensus 146 ~~~~~~p 152 (915)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999987
No 247
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=1.2e-12 Score=134.40 Aligned_cols=245 Identities=16% Similarity=0.246 Sum_probs=171.6
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce----eEEEEecCCCEEEEEE-----eCCCCEEEEEeCCCeEEEEECC
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM----AKSFEVTELPVRSAKF-----VARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~l~~-----s~~~~~l~~~~~dg~i~vwd~~ 87 (915)
.++....+-.|.+|...- ...+.+|+++.+.. +....-......|-.| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344555555667766543 45688998875322 1111111122334444 3456678899899999999876
Q ss_pred CCceeEEEe----cCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEec-CCCCEEEEE
Q 002496 88 TMDKVKVFE----AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASA 161 (915)
Q Consensus 88 ~~~~~~~~~----~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~~~ 161 (915)
..+..+.+. .....++|+.|-|.+ ..++.+..+|.+++||..-. ...+...|.+ +++..|...
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------CGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------ccCCCCcccccCCCCeeEEe
Confidence 532222121 234689999999955 45667788999999987321 1111111211 145555544
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002496 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 162 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
..-+. .+..++..+.-..+.|+..+|+|+|. +|++.+.||.++|||+.+.+.+-.++...+...|++|+|||
T Consensus 273 t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 273 TSKSK------KTRNPVARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eeecc------ccCCccceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence 32211 12245555555667899999999887 89999999999999999888888888788899999999999
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
++|++|++|.-|.||.+...+.+..-++|...|..++|.|
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999998
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.5e-12 Score=142.79 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=153.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg--~i 81 (915)
.+.+..|...+.+.+|+|||+.|+..+. ...|.+||+.+++... +....+...+.+|+|||+.|+. .+.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3456677788999999999999998764 3469999998876543 3334555668899999998864 44555 69
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCe--EEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+.......+|+|+|++|+.++. +|. |.++|+.++. ..... .+.......+|+| +++.+
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~~g~~~~~~~~Sp-DG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-FQGNYNARASVSP-DGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-cCCCCccCEEECC-CCCEE
Confidence 9999988764 345555555678899999999887764 344 7777777663 32222 2334455789999 88888
Q ss_pred EEEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCe
Q 002496 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 159 ~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i 232 (915)
+..+.++ .|.+||+.+++.. .+. +........|+|+++ +++..+. .+.|.+++.. +.....+..+.+.+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEEcccCCCCC
Confidence 7765443 5999999877644 333 222345678999988 4555443 3468888875 55555565555667
Q ss_pred EEEEEeC
Q 002496 233 SAVCFHP 239 (915)
Q Consensus 233 ~~i~~~~ 239 (915)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 7778876
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=2e-12 Score=125.58 Aligned_cols=213 Identities=21% Similarity=0.350 Sum_probs=165.0
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEEC-CCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002496 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNY-QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~-~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~dg~ 80 (915)
.++.+.+.++||.+.|.....-|..+-+.+.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 356788999999999999999998888999999999999953 3444433333 34678999999999999999999999
Q ss_pred EEEEEC----CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--------------------------
Q 002496 81 IRVYNY----NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK-------------------------- 130 (915)
Q Consensus 81 i~vwd~----~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~-------------------------- 130 (915)
+.-+.+ +....++....|...+..+.|+-....+++.+.|..+.---.+.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvG 171 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVG 171 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEec
Confidence 998865 34445566667888888888877767777766654432111111
Q ss_pred --------------CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEe
Q 002496 131 --------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFT 195 (915)
Q Consensus 131 --------------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~ 195 (915)
...+...+.+|.+.+.+++|.| ....+.+|..|..+.+||+...+- ...+.+|...|..+.+.+
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 1233445678999999999999 888999999999999999976543 356678888998888877
Q ss_pred CCCcCEEEEEeCCCeEEEEECCC
Q 002496 196 GGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 196 ~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
... .+++++.||.|.+|++..
T Consensus 251 ~t~--~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTR--QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhe--eeeeccCCCeEEEEeccc
Confidence 666 699999999999999753
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.4e-12 Score=139.32 Aligned_cols=222 Identities=11% Similarity=0.030 Sum_probs=154.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002496 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~V~~v~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~~~dg--~i 81 (915)
.+.+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+. .+.++ .|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3556778889999999999999988764 467999999888653 45556677889999999998764 44454 47
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+........|+|||+.|+..+. + ..|.+||+.++ ...... .+...+....|+| +++.+
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt-~~~~~~~~~~~Sp-dG~~i 348 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRIS-FGGGRYSTPVWSP-RGDLI 348 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEee-cCCCcccCeEECC-CCCEE
Confidence 7889887654 445556666778999999999887764 3 36888898776 333332 2345567788999 78888
Q ss_pred EEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-C-----CeEEEEECCCCcEEEEecCCc
Q 002496 159 ASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D-----HTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 159 ~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~ 229 (915)
+..+.+ ..|.+||+.++. ...+. ....+....|+|+|+ .|+..+. . ..+.++|+..+.. ..+. ..
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~ 422 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TP 422 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CC
Confidence 776543 358888886544 33333 233567889999988 4544333 2 3688888865544 4444 23
Q ss_pred cCeEEEEEeCC
Q 002496 230 HNVSAVCFHPE 240 (915)
Q Consensus 230 ~~i~~i~~~~~ 240 (915)
..+...+|+|-
T Consensus 423 ~~~~~p~Wsp~ 433 (435)
T PRK05137 423 GDASDPAWSPL 433 (435)
T ss_pred CCccCcccCCC
Confidence 44666777763
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=3.2e-12 Score=126.51 Aligned_cols=221 Identities=9% Similarity=0.122 Sum_probs=169.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEE-EEeCC--CeEEEEE
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVV-AGADD--MFIRVYN 85 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~d--g~i~vwd 85 (915)
..+.+|..++.. ..+|++|..+|.+.+|..+.+. .+..+..+ .++..+.-++....|+ +|+.. ..+.+||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344455555544 3468888889999999988442 22233333 4566777777665554 58888 8899999
Q ss_pred CCCCceeEEEecCC---------CCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCC
Q 002496 86 YNTMDKVKVFEAHT---------DYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 86 ~~~~~~~~~~~~~~---------~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
++..+++..-+.-. -.++.+.|-+. ...+++++.-+.+++||.+.++.+...+.-...+++++...| +
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~ 258 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-S 258 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-C
Confidence 99875554433211 13677888887 778999999999999999998888888888889999999999 9
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceE-EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeE
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
++.+++|..-|.+..||+++++.... +.+..+.+.++..+|... ++++++-|+.|+|+|+++.+.+...- -...++
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt 335 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLT 335 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchhhhhhh-hhcccc
Confidence 99999999999999999999887765 788889999999988766 89999999999999999866655433 234456
Q ss_pred EEEEeCC
Q 002496 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
++.+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666554
No 252
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.7e-11 Score=124.43 Aligned_cols=234 Identities=15% Similarity=0.195 Sum_probs=164.5
Q ss_pred cCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecC--CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe
Q 002496 56 TELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
++...+.|..+|||+++. +|...-.|++||+..... .|..| ...|...-.+.|-..++.-..|.+|-+-..-+.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~- 126 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR- 126 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-
Confidence 556778999999999865 666788999999986433 34434 345666666666555666666777665433221
Q ss_pred eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEE
Q 002496 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
..... -...-..++++.-...+++. +....|+-+++..|..+..+....+.++++..++-.. +|++|+.+|.|.
T Consensus 127 hy~~R---IP~~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VE 200 (703)
T KOG2321|consen 127 HYRTR---IPKFGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTEDGVVE 200 (703)
T ss_pred eeeee---cCcCCccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccCceEE
Confidence 11111 12233556666534444444 4456789999999998888888889999999988765 899999999999
Q ss_pred EEECCCCcEEEEecC------Ccc-----CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee-cCCccEEEEEEe
Q 002496 213 VWDYQTKSCVQTLEG------HTH-----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYM 280 (915)
Q Consensus 213 iwd~~~~~~~~~~~~------~~~-----~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~ 280 (915)
+||.++...+.++.. |.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. ...-+|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999998776655532 222 39999999999999999999999999999888655433 234578888887
Q ss_pred cCC-CEEEEEecCCeEEEe
Q 002496 281 KSS-RRIVIGYDEGTIMVK 298 (915)
Q Consensus 281 ~~~-~~l~~~~~dg~v~i~ 298 (915)
+.+ +--++..+...+.||
T Consensus 281 ~~~~q~~v~S~Dk~~~kiW 299 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIW 299 (703)
T ss_pred ccCCCceEEecchHHhhhc
Confidence 763 233445555666666
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.9e-11 Score=118.32 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCeEEEEEc----------CCcEEEEECC-CCceeEEEEe-cCCCEEEEEEeCCCCEEEEE--eCCCeEEE
Q 002496 18 VKSVDLHPSEPWILASLY----------SGTVCIWNYQ-SQTMAKSFEV-TELPVRSAKFVARKQWVVAG--ADDMFIRV 83 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~--~~dg~i~v 83 (915)
=..+.|+|+|.+|++-.. -|...||-++ .+..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356889999998876543 2345555542 2334455544 35679999999999997655 35679999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++. ....... | ..+..++|+| ++++|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsP-dGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSP-DGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcC-CCCEEEE
Confidence 9996 66666664 567889999999999999874 367999999976 3333332 3 4478999999 8999998
Q ss_pred EEC------CCcEEEEECCCCCCc
Q 002496 161 ASL------DRTIKIWNLGSPDPN 178 (915)
Q Consensus 161 ~~~------dg~i~v~d~~~~~~~ 178 (915)
++. |..++||+.. |+.+
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred EEeccceeccccEEEEEec-CeEe
Confidence 875 6788999984 4433
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=5.3e-10 Score=124.62 Aligned_cols=196 Identities=20% Similarity=0.235 Sum_probs=156.5
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
.|..-.+.-....++.++.++.+.|||...+.....+..... +..-+.++++.-++++|+.-+.|.+|.....+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 344445555677889988899999999888876665553322 2333455677788999999999999998844444
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
..+.+|.+.|.++.|+-+|.++++.|+|.++++|++++........-+|+.+|..++|.| . .+++++.|-+.++|+.
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGV 245 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEec
Confidence 468899999999999999999999999999999999998666667778999999999997 3 9999999999999976
Q ss_pred CCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002496 173 GSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 173 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
+. +....+..|. +.+..++..++.. .+++++.|+.+++|++..
T Consensus 246 ~~-~~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-ceehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhhhc
Confidence 44 3344565554 5678888877655 799999999999999753
No 255
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=1e-08 Score=104.26 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=127.3
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec------CC-----ccEEEEE-EecCCCCEEEEEECCCcEEEEECCCC
Q 002496 108 HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG------HS-----HYVMQVT-FNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~~i~~~~-~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
+.||+.|+.. ..|.|.+||..+.. +...-.+ .. .+..-+. |++.++++++..|. |...+.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3456655543 34678888887652 2221111 00 0111111 44556888888875 66667665444
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC-eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
-.+. -++...|.-..+..++. -++.|..|| .+-++|.++++ +..+...-+.|.++..+|+|++++++.....+.
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3222 24677788888877776 488888888 89999998665 455666788999999999999999998888899
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002496 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 296 (915)
+.|+.+|.....-+...+-|+.+.|+|+++++|-+.-+|.+.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 999999987655555567899999999999999988877654
No 256
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.6e-10 Score=119.27 Aligned_cols=306 Identities=16% Similarity=0.225 Sum_probs=188.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEEC
Q 002496 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDW 128 (915)
Q Consensus 60 v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~ 128 (915)
-+-+.|||.|.+|++--..| |.+|--.+...++.|. |+ .|..+.|||..+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987766 8899766656666664 55 4889999999999998653 257999999
Q ss_pred CCCeeEEEEeec--CCccE-EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002496 129 EKGWMCTQIFEG--HSHYV-MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 129 ~~~~~~~~~~~~--~~~~i-~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+| .....+.. ....+ .-..||. |+.++|.-.. .+|.||+..+..+.-.-.-...+|....|+|.+. +|+-=
T Consensus 290 ~tG-~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAYw 364 (698)
T KOG2314|consen 290 ATG-LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAYW 364 (698)
T ss_pred ccc-chhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc--eEEEE
Confidence 999 44444443 22222 3357888 7888887765 5789998765333222223446788889999876 44432
Q ss_pred eC-----CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE----------cCCcEEEEeCCCcceeeeeecC
Q 002496 206 SD-----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 206 ~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.. -.++.+..+.+++.+++..-+.-.=..+-|-.+|.+|+.-- .-..+-|+.++.....-..-.-
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 21 24577778777877777665543334566777888887532 1123556665544322222223
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecC
Q 002496 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
...|...+|-|.|+.+++-+.+-. ...+..+.+.. ++....+ ++.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~------------------------k~tvsfY~~e~--------~~~~~~l-Vk~~d 491 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTV------------------------KNTVSFYAVET--------NIKKPSL-VKELD 491 (698)
T ss_pred chheeeeeeccCCCeEEEEEcccc------------------------ccceeEEEeec--------CCCchhh-hhhhc
Confidence 467889999999998887443211 01111222111 1111111 11111
Q ss_pred CcccCCceEEECCCCCEEEEEc----CCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec
Q 002496 351 TCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES 408 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~g~~l~~~~ 408 (915)
. ...+.+.|+|.|+++++++ .|.+.+|+......+ ..-..+.+-|.|.|+|+++.+
T Consensus 492 k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 1 2446899999999999875 567777766532211 112335566667777666554
No 257
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=3.4e-11 Score=116.51 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=112.0
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCCCeeEEEEe-ecCCccEEEEEEecCCCCEEEEE--ECCCcEEE
Q 002496 103 RCVAVHPTLPYVLSSSD----------DMLIKLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASA--SLDRTIKI 169 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~~~--~~dg~i~v 169 (915)
..+.|+|+|.+|++-.. -|...+|.++........+ ....++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45889999988775433 2345555553322223333 23445799999999 77776554 45679999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEE
Q 002496 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 246 (915)
||++ ++.+..+ ....++.+.|+|+|+ ++++++. .|.|.+||.++.+.+.... | ..++.++|+|+|+++++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 9996 5555555 356788999999998 7887764 4679999999888887765 3 34789999999999998
Q ss_pred EEc------CCcEEEEeCCCcceeeee
Q 002496 247 GSE------DGTVRIWHATTYRLENTL 267 (915)
Q Consensus 247 ~~~------dg~v~iwd~~~~~~~~~~ 267 (915)
++. |+.++||+.. |+++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 874 6789999974 6665543
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.4e-10 Score=129.59 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=154.2
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|...+ ..+.+..+...+.+.+|+|||++|+.++.. ..|++||+.+++... +..+...+.++.|+|+|+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 35888887544 345555577789999999999999987653 489999999876543 3345566778999999997
Q ss_pred EEEE-EcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002496 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.++ .|++||+.++ ... .+..+........|+| +++.|+..+. ++ .|+++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~-~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK-QLT-RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC-CEE-ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 7654 4443 5888998876 333 3333444455778999 7777766554 33 588888876653 344445556
Q ss_pred eeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEEEEeCCCc
Q 002496 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
+....|+|+++ +++.++.++ .|.+||+.++... .+... .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 324 ~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 324 NASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred ccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 67889999887 677766665 7899998876543 23222 2334568999999888877654 3555553 34
Q ss_pred ceeeeeecCCccEEEEEE
Q 002496 262 RLENTLNYGLERVWAIGY 279 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~ 279 (915)
+....+..+.+.+..++|
T Consensus 399 ~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceeeECCCCCCCcCCCCC
Confidence 444444443344444444
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2e-10 Score=128.32 Aligned_cols=234 Identities=15% Similarity=0.057 Sum_probs=153.0
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002496 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|...+. .+.+..+..++....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876554 45555677789999999999999876643 479999999876543 33334455678999999988
Q ss_pred EE-EEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002496 115 LS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+| .|.+||+.++ ... .+..+........|+| +++.++..+. +| .|+++++.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~-~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR-QLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCC-CeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 74 44444 6888899887 333 3344555566788999 7776665553 33 57777887766432 22222333
Q ss_pred eEEEEEeCCCcCEEEEEeC-CC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCcc
Q 002496 189 NCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~ 262 (915)
....|+|+++ +++..+. ++ .|.+||+.+++... +.. ........|+|+|+.++..+.+ ..|.+++.. +.
T Consensus 334 ~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 334 ARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred cceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4578999988 4555443 33 58889998876533 322 1222356899999988876644 246677764 44
Q ss_pred eeeeeecCCccEEEEEEecC
Q 002496 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44445444456677777763
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=1e-10 Score=113.69 Aligned_cols=239 Identities=16% Similarity=0.228 Sum_probs=167.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
..-+.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999644322 233344443 2578899998765 56777
Q ss_pred EcCCeEEEEECCCCee----------------------------------EEEE-eecCCccEEEEEEecCCCCEEEEEE
Q 002496 118 SDDMLIKLWDWEKGWM----------------------------------CTQI-FEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~~----------------------------------~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
+.|.+|++|.+..... +.+. -..|.--|.++.++. |...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 8899999998753211 0111 124666789999997 77777775
Q ss_pred CCCcEEEEECCCCCCceEE---ecC-----CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE----EE------
Q 002496 163 LDRTIKIWNLGSPDPNFTL---DAH-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QT------ 224 (915)
Q Consensus 163 ~dg~i~v~d~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------ 224 (915)
.|-.|.+|++.-....+.+ +++ ..-|++..|+|.... +++-.++.|+|++-|++..... ..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4788999998654433333 222 234788889987654 7888889999999999843211 01
Q ss_pred ------ecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCC-CcceeeeeecCC------------cc---EEEEEEecC
Q 002496 225 ------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYGL------------ER---VWAIGYMKS 282 (915)
Q Consensus 225 ------~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~------------~~---v~~i~~~~~ 282 (915)
+..--..|+.+.|+++|+++++-.. -+|++||+. ..+++.+++.|. .. -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112245889999999999998764 489999984 445666655442 11 245889999
Q ss_pred CCEEEEEecCCeEEEec
Q 002496 283 SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i~~ 299 (915)
+..+.+|+....+++..
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999888854
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.7e-10 Score=126.36 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=150.4
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002496 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|..... .+.+..+..++.+..|+|||++|+..+.+ ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 57777865443 34555577789999999999999876542 3688999988765332 2223344578999999988
Q ss_pred EE-EEcCCe--EEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002496 115 LS-SSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+|. |.++|+.++ .... +..+........|+| +++.++..+. ++ .|.++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 75 455664 788888876 3333 334445567889999 7776665543 34 46667877765433 32222233
Q ss_pred eEEEEEeCCCcCEEEEEe-CCC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-C--cEEEEeCCCcc
Q 002496 189 NCVDYFTGGDKPYLITGS-DDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-G--TVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~d-g--~v~iwd~~~~~ 262 (915)
...+|+|+++ +++..+ .++ .|.++|+.++.... +... .......|+|+|+.|+..+.+ | .+.+++. +|+
T Consensus 353 ~~~~~SpDG~--~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGR--SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCC--EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 4578999988 454443 344 46667887776432 3222 122345899999987765543 3 3677775 566
Q ss_pred eeeeeecCCccEEEEEEecC
Q 002496 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66666655566777888773
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.36 E-value=4.2e-08 Score=111.55 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=131.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC----C
Q 002496 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG----S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~----~ 174 (915)
.+.|.++.|..++..++.+...|.|.+-|..+. .......-...|.+++|+| |+..++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 358999999999999999999999999988775 3444455567899999999 99999999988888765420 0
Q ss_pred -------------------CCCceEEecCC---------------------CCeeEEEEEeCCCcCEEEEE-----eCCC
Q 002496 175 -------------------PDPNFTLDAHQ---------------------KGVNCVDYFTGGDKPYLITG-----SDDH 209 (915)
Q Consensus 175 -------------------~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~-----~~dg 209 (915)
|+....+.+.. ..-+.++|-.+|+ ++++. ...+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCce
Confidence 01111222111 1123577766665 77773 2337
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE---cCCcEEEEeCCCcceeee----eecCCccEEEEEEecC
Q 002496 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS---EDGTVRIWHATTYRLENT----LNYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~ 282 (915)
.|++||-. |..-.+-....+--.+++|-|.|..+++-. .|+.|.+|. ++|-.... +......+..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 99999966 443222222333345799999999888754 456799998 34433322 2222334899999999
Q ss_pred CCEEEE---EecCCeEEEec
Q 002496 283 SRRIVI---GYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~---~~~dg~v~i~~ 299 (915)
+..|++ ......|.+|.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCceeeeecccccceEEEEE
Confidence 999998 44555588874
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.5e-08 Score=108.97 Aligned_cols=266 Identities=11% Similarity=0.176 Sum_probs=175.3
Q ss_pred EEEEEcC----CcEEEEEC--CCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC--c--eeEE
Q 002496 30 ILASLYS----GTVCIWNY--QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGAD----DMFIRVYNYNTM--D--KVKV 94 (915)
Q Consensus 30 la~~~~d----g~v~iwd~--~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~----dg~i~vwd~~~~--~--~~~~ 94 (915)
+++|++. +.|.+|++ .++++...-. ........++++|++++|.+... ++.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5667765 68999887 5554432221 23455677999999999999876 579999988764 3 2333
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCCCeeEEEE---ee----------cCCccEEEEEEecCCCCEEEE
Q 002496 95 FEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQI---FE----------GHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~---~~----------~~~~~i~~~~~~p~~~~~l~~ 160 (915)
..........++++|++++|+++. .+|.|.++++.....+... .. .......++.|+| +++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEE
Confidence 333455677899999999999887 4899999999863233222 11 1234467899999 7777666
Q ss_pred EEC-CCcEEEEECCCCCC-c---eEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC--CCc--EEEEecCC--
Q 002496 161 ASL-DRTIKIWNLGSPDP-N---FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKS--CVQTLEGH-- 228 (915)
Q Consensus 161 ~~~-dg~i~v~d~~~~~~-~---~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-- 228 (915)
... ...|.+|++..... + ..+ .........+.|+|+++. ++++.-.++.|.++++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 543 45799999976652 1 122 234566789999999874 44555668899999988 443 22333211
Q ss_pred ----ccCeEEEEEeCCCCEEEEEE-cCCcEEEEeCC--Ccc--eeeeeecCCccEEEEEEecCCCEEEEEec-CCeEEE
Q 002496 229 ----THNVSAVCFHPELPIIITGS-EDGTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 229 ----~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~v~i 297 (915)
......|.++|+|++|+++. ..+.|.+|++. +++ .+..+.......+.++++|+|++|+++.. ++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12578899999999888765 45679999983 344 33444444455899999999999998874 456655
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=9.5e-09 Score=110.37 Aligned_cols=263 Identities=13% Similarity=0.128 Sum_probs=170.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEc----CCcEEEEECCCC--ce--eEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEE
Q 002496 15 SERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQ--TM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYN 85 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~vwd 85 (915)
......++++|++++|.+... +|.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999998876 468999987764 33 3334334455678999999999999875 89999999
Q ss_pred CCC-CceeEE---Ee----------cCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCee-EEE---EeecCCccEE
Q 002496 86 YNT-MDKVKV---FE----------AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM-CTQ---IFEGHSHYVM 146 (915)
Q Consensus 86 ~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~---~~~~~~~~i~ 146 (915)
+.. +..... +. .......++.|+|+++++++... ...|.+|+++.... +.. ..........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 986 333222 21 12345789999999998887643 35799999976531 211 1223345578
Q ss_pred EEEEecCCCCEE-EEEECCCcEEEEECC--CCCC--ceEEecC------CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 147 QVTFNPKDTNTF-ASASLDRTIKIWNLG--SPDP--NFTLDAH------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 147 ~~~~~p~~~~~l-~~~~~dg~i~v~d~~--~~~~--~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.+.|+| +++++ ++.-.+++|.++++. ++.. ...+... ......+.++|+++. ++++....+.|.+|+
T Consensus 196 h~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 196 HLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-LYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-EEEEECTTTEEEEEE
T ss_pred EEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-EEEEeccCCEEEEEE
Confidence 999999 66655 555568889999987 3321 1222211 124678999999883 344455678999999
Q ss_pred CC--CCc--EEEEecCCccCeEEEEEeCCCCEEEEEE-cCCcEEEEeC--CCcceeeeee-cCCccEEEEEE
Q 002496 216 YQ--TKS--CVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHA--TTYRLENTLN-YGLERVWAIGY 279 (915)
Q Consensus 216 ~~--~~~--~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~-~~~~~v~~i~~ 279 (915)
+. ++. .+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .......|+.|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 83 343 3334443344578999999999999887 4567888865 5676554432 23344556554
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.7e-10 Score=127.27 Aligned_cols=219 Identities=11% Similarity=0.066 Sum_probs=146.8
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg--~i~ 82 (915)
+.+..+...+.+.+|+|||++|+.+... ..|++||+.+++... +..+.+.+.+++|+|||+.|+.. +.++ .|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455677789999999999999987653 479999998886543 33455667789999999988754 4343 688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+|++.+++. ..+..+........|+|+|+.|+.++.. + .|.++|+.++. .. .+..+........|+| +++.++
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~-~l~~~~~~~~~~~~sp-dg~~i~ 337 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VR-RLTFRGGYNASPSWSP-DGDLIA 337 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCCccCeEECC-CCCEEE
Confidence 999987654 3344455555678999999988876653 2 68888887763 22 3333455677889999 788888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC---eEEEEECCCCcEEEEecCCccCeE
Q 002496 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
.++.++ .|.+||+.++.. ..+.. ........|+|++. +|+..+.++ .+++.+.. +.....+..+.+.+.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGR--MILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR 412 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCC--EEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence 887765 789999877543 33322 22334568999887 455555433 45555543 555555544344444
Q ss_pred EEEE
Q 002496 234 AVCF 237 (915)
Q Consensus 234 ~i~~ 237 (915)
.++|
T Consensus 413 ~~~w 416 (417)
T TIGR02800 413 EPAW 416 (417)
T ss_pred CCCC
Confidence 4433
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.1e-10 Score=126.77 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=147.1
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg--~i~ 82 (915)
+.+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999876643 369999998886543 33344556678999999988754 4444 688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+||+.+++.. .+..+........|+|+|+.|+..+. + ..|.++++.++. ...... .........|+| +++.++
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~-~~~~~~~~~~Sp-dg~~i~ 346 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTF-VGNYNARPRLSA-DGKTLV 346 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeec-CCCCccceEECC-CCCEEE
Confidence 8899887644 44445556677899999998877664 2 368888887763 332221 223344678999 777777
Q ss_pred EEECC-C--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-C--CeEEEEECCCCcEEEEecCCccCeE
Q 002496 160 SASLD-R--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~i~ 233 (915)
..+.+ + .|.++|+.+++.. .+.. ........|+|+|. .++..+. + ..+.+++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGT--MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 76643 3 4888999877543 3322 22223568999987 4544433 3 357777775 444445554555677
Q ss_pred EEEEeCC
Q 002496 234 AVCFHPE 240 (915)
Q Consensus 234 ~i~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7778763
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=8.4e-10 Score=121.36 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=152.1
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE---EEeCC--CeEEEEECCCCceeEEEecCCCCEEEEEEcCCC
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV---AGADD--MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~---~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
+.|.+.|...+.. +.+......+.+-+|+|||+.++ +...+ ..|.+.++.+++..... ...+......|||||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4677888665544 44555566677889999998632 33333 46888899877654333 234455678999999
Q ss_pred CEEEEEEc-----CCeEEEEECCCC--eeEEEEeecCCccEEEEEEecCCCCEEEEEE-CCCcEEEE--ECCC-CCCceE
Q 002496 112 PYVLSSSD-----DMLIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIW--NLGS-PDPNFT 180 (915)
Q Consensus 112 ~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~v~--d~~~-~~~~~~ 180 (915)
+.|+..+. +..+..|++.++ ....+....+.......+|+| |++.|+..+ .+|...+| ++.. +.....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 98886653 223444676642 133334333333456789999 777766655 46654455 4432 223344
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEeCC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc---CCcEE
Q 002496 181 LDAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVR 254 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~---dg~v~ 254 (915)
+......+....|+|+|+ .|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+..+. .+.|.
T Consensus 322 lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 444555677889999998 45554432 479999998887644 3323345678999999998875443 34688
Q ss_pred EEeCCCcceeeeeecCCccEEEEEEecCC
Q 002496 255 IWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (915)
++|+.+++..... ...+.+...+|+|..
T Consensus 399 ~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEee-cCCCcccCceecCCC
Confidence 8898877654433 333556778888754
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.3e-10 Score=122.34 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=143.6
Q ss_pred hhcccCCCCEEEEEEcCCCCeEE---EEEcC--CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----C
Q 002496 9 RKLAQRSERVKSVDLHPSEPWIL---ASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----D 78 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-----d 78 (915)
+.+......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.|+..+. +
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 34555566778889999998533 33333 358888988776433 3334555667899999999887653 2
Q ss_pred CeEEEEECCCC---ceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCe--EEEEECCCCeeEEEEeecCCccEEEEEEec
Q 002496 79 MFIRVYNYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 79 g~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
..+.+|++.++ +.......+.......+|+|||+.|+..+ .+|. |.++++.........+..+...+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 23444776653 33333333333456789999999888765 4564 444455422122333444445677889999
Q ss_pred CCCCEEEEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EeC--CCeEEEEECCCCcEEEEec
Q 002496 153 KDTNTFASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD--DHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 153 ~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~ 226 (915)
+++.|+..+.+ ..|.+||+.+++.. .+......+....|+|+++ .|+. +.. ...|+++|+.+++......
T Consensus 337 -DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~--~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 337 -DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSL--HLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 78877766543 36899999887654 3333344567889999987 4543 332 3578889988776544333
Q ss_pred CCccCeEEEEEeCCC
Q 002496 227 GHTHNVSAVCFHPEL 241 (915)
Q Consensus 227 ~~~~~i~~i~~~~~~ 241 (915)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556677888753
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=3.9e-10 Score=107.64 Aligned_cols=250 Identities=12% Similarity=0.132 Sum_probs=170.1
Q ss_pred CCcEEEEECCCCceeE--EE-EecCCCEEEEEEeC---CCC-EEEEEeCCCeEEEEECCCCceeEEEecCCC------CE
Q 002496 36 SGTVCIWNYQSQTMAK--SF-EVTELPVRSAKFVA---RKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTD------YI 102 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~--~~-~~~~~~v~~l~~s~---~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~------~i 102 (915)
.|.+.+|++...+... ++ ......+..+.|.. +|. .++-+..+|.|.+|..........+.+-+. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4679999988765543 22 22345677788864 445 456667789999998765444444432211 24
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCC-eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CceE
Q 002496 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFT 180 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~-~~~~ 180 (915)
.++.|++.+..++++..+|.+.+-+.... -+..+..+.|.-..+...|+..+++++.+|+.|+.+..||++.++ .+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 57889999999999999999996655443 122347889999999999998889999999999999999999443 2322
Q ss_pred -EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCCC--EEEEEEcCCcEEEE
Q 002496 181 -LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRIW 256 (915)
Q Consensus 181 -~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~v~iw 256 (915)
.+.|..+|.+|.-+|. ...++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-. .++++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence 3467889999987766 345999999999999999995 56665443 457899999999543 444444444 6666
Q ss_pred eCCCcce-----eeeeecCCccEEEEEEecCCCEEEE
Q 002496 257 HATTYRL-----ENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 257 d~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (915)
+.+.+.. ....+.|.+-...-.|......+++
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccccceeee
Confidence 6654432 2233344333344444333345665
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=6.1e-10 Score=116.84 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=156.8
Q ss_pred cCCCCeEEEEEcCCcEEEEECCCCceeEEEEe---cCCCEEEEEEe------C--------------CCCEEEEEeCCCe
Q 002496 24 HPSEPWILASLYSGTVCIWNYQSQTMAKSFEV---TELPVRSAKFV------A--------------RKQWVVAGADDMF 80 (915)
Q Consensus 24 sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~l~~s------~--------------~~~~l~~~~~dg~ 80 (915)
.|...++|....||.++|||...++....|.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999988877764 24556666663 2 3346788888999
Q ss_pred EEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 81 IRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
|.+|+...|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.... .....+......+.+++.+| |+..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEE
Confidence 9999999999887775 79999999999999999999999999999999987 77788888888899999999 79999
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC-----CCcCEEEEEeCCCeEEEEECC
Q 002496 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----GDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~ 217 (915)
++++ ++|++||+.+.+.+..+.+|.++|.++.|... |.. +|.+...+..+.+|-..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY-VLSSAAAERGITVWVVE 220 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce-eeeccccccceeEEEEE
Confidence 9887 89999999999999999999999999999876 331 34444455667777654
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=4.6e-10 Score=124.54 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=142.6
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEc-C--CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEEE
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLY-S--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIRV 83 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg--~i~v 83 (915)
.+..+...+.+..|||||++|+..+. + ..|.+||+.+++... +....+......|+|||+.|+.. +.+| .|.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34445667889999999999987654 2 358899988876533 33233444578999999988754 5566 4888
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+|+.+++. ..+..+........|+|+|+.|+..+. + ..|.++|+.++. ..... ..........|+| +++.++.
T Consensus 291 ~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt-~~g~~~~~~~~Sp-DG~~l~~ 366 (448)
T PRK04792 291 VDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLT-FEGEQNLGGSITP-DGRSMIM 366 (448)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEe-cCCCCCcCeeECC-CCCEEEE
Confidence 89887654 344445556678899999998876654 3 357777887763 32221 1222334578999 7777766
Q ss_pred EEC-CC--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC--eEEEEECCCCcEEEEecCCccCeEEE
Q 002496 161 ASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 161 ~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~i 235 (915)
.+. ++ .|.++|+.+++.. .+... .......|+|++.. ++++...++ .+++++. +|.....+..+.+.+...
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~-I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM-VIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE-EEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 554 34 4566787776543 23222 12234579999884 333333444 3777786 466666676666667778
Q ss_pred EEeC
Q 002496 236 CFHP 239 (915)
Q Consensus 236 ~~~~ 239 (915)
+|+|
T Consensus 443 ~Wsp 446 (448)
T PRK04792 443 AWSP 446 (448)
T ss_pred ccCC
Confidence 8887
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=4.4e-08 Score=102.00 Aligned_cols=261 Identities=10% Similarity=0.060 Sum_probs=167.2
Q ss_pred CCCeEEEEEcC-----CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCc
Q 002496 26 SEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMD 90 (915)
Q Consensus 26 ~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----------dg~i~vwd~~~~~ 90 (915)
++.++++.... |+|.+.|..+++.+..+.....+- .+ ++|||+.|+++.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 44555554443 899999999999999888655443 34 9999999887765 7899999999999
Q ss_pred eeEEEecCCC-------CEEEEEEcCCCCEEEEEE-c-CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEE
Q 002496 91 KVKVFEAHTD-------YIRCVAVHPTLPYVLSSS-D-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 91 ~~~~~~~~~~-------~i~~l~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
.+..+....+ ....++++|+|++|++.. . +..|.+.|+.+++....+-.+ ....-...+ ...+.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t~---e~~~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPTA---NDTFFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEec---CCccEEE
Confidence 9988874222 334789999999999776 3 689999999998444333221 111112222 1222233
Q ss_pred ECCCcEEEEECCCCCCce-----EEecCCCCee-EEEEEe-CCCcCEEEEEeCCCeEEEEECCCC-----cEEEEecC--
Q 002496 162 SLDRTIKIWNLGSPDPNF-----TLDAHQKGVN-CVDYFT-GGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEG-- 227 (915)
Q Consensus 162 ~~dg~i~v~d~~~~~~~~-----~~~~~~~~v~-~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-- 227 (915)
+.||......+....... .+.....++. .-.+.+ ++. ++.+... |+|.+.|+... .....+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 456655554443211111 1111000000 003455 443 5555555 99999996432 22222211
Q ss_pred -----CccCeEEEEEeCCCCEEEEEEc----------CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEEe-
Q 002496 228 -----HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY- 290 (915)
Q Consensus 228 -----~~~~i~~i~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~- 290 (915)
..+.+.-++++|+++.+++... .+.|.++|..+++.+..+... ..++.++++||++ +|++..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCC
Confidence 1223445999999998887431 247999999999999988865 6899999999999 777665
Q ss_pred cCCeEEE
Q 002496 291 DEGTIMV 297 (915)
Q Consensus 291 ~dg~v~i 297 (915)
.++.|.+
T Consensus 320 ~s~~VsV 326 (352)
T TIGR02658 320 GDKTLYI 326 (352)
T ss_pred CCCcEEE
Confidence 4566665
No 273
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2e-10 Score=127.82 Aligned_cols=267 Identities=18% Similarity=0.233 Sum_probs=186.9
Q ss_pred CCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec-CCCEEEEEEeC------CCCEEEEEeCCCeEEEEECCC
Q 002496 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVA------RKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~s~------~~~~l~~~~~dg~i~vwd~~~ 88 (915)
+++.+..+-. ++|++|. .-.|.+||+.++..+..+... -.++. .+ .+.+++++..-+.+..=....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh
Confidence 3444444433 6777765 457999999988766544321 11111 11 233455554433333322111
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEE---EEEEecCCCCEEEEEECCC
Q 002496 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM---QVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~---~~~~~p~~~~~l~~~~~dg 165 (915)
+... .-.+.|....+......++.++.+..+.+||...++....+......... -+-+++ +.-++++|+.-+
T Consensus 81 -~~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 -QIIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFG 155 (967)
T ss_pred -hhhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccc
Confidence 1111 22333444555566778899999999999999887444433322221111 122344 667889999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE-EecCCccCeEEEEEeCCCCEE
Q 002496 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-TLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l 244 (915)
.|.+|+....+....+.+|.+.+..+.|+.+|. ++++.++|+++++|++.+.+... ..-+|...|+.++|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999975554456889999999999999888 89999999999999999887655 55679999999999998 89
Q ss_pred EEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCCCEEEEEecCCeEEEec
Q 002496 245 ITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~v~i~~ 299 (915)
++++.|.+.++|+.. +..+..+..|. ..+|.++..++...+++++.||.+.+|.
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999754 55555666664 5699999999999999999999999975
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.7e-08 Score=105.04 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=158.2
Q ss_pred EcCCCCeEEEEEc----------CCcEEEEECCCCceeEEEEecCC-------CEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 002496 23 LHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGA-D-DMFIRV 83 (915)
Q Consensus 23 ~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l~~s~~~~~l~~~~-~-dg~i~v 83 (915)
+||||+.|+++.. ++.|.+||..+++.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998888765 68899999999999988875333 234789999999999876 3 789999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEE---EeecCCccEE-EEEEecCCCCEE
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ---IFEGHSHYVM-QVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~i~-~~~~~p~~~~~l 158 (915)
.|+.+++.+..+.-. +...-...++++.+ + -+.||......+....+ ... .+.....++. .-.|.+.++..+
T Consensus 133 vD~~~~kvv~ei~vp-~~~~vy~t~e~~~~-~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVP-DCYHIFPTANDTFF-M-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCC-CCcEEEEecCCccE-E-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 999999999888752 23333333333322 2 22344444433332111 111 1111001110 003455466777
Q ss_pred EEEECCCcEEEEECCCCCC-----ceEEe-------cCCCCeeEEEEEeCCCcCEEEE-E---------eCCCeEEEEEC
Q 002496 159 ASASLDRTIKIWNLGSPDP-----NFTLD-------AHQKGVNCVDYFTGGDKPYLIT-G---------SDDHTAKVWDY 216 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~-----~~~~~-------~~~~~v~~~~~~~~~~~~~l~~-~---------~~dg~i~iwd~ 216 (915)
.+... |+|.+.|+.+... ...+. ...+.+.-++++++++. +.+ . ...+.|.++|.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~--lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR--IYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE--EEEEecCCccccccCCCCEEEEEEC
Confidence 66665 9999999754322 22211 12334455899998885 443 2 12258999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCcEEEEeCCCcceeeee
Q 002496 217 QTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (915)
.+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999988874 45789999999999 777665 5788999999999988887
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=8.9e-10 Score=105.28 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=163.8
Q ss_pred CCEEEEEEcC---CCC-eEEEEEcCCcEEEEECCCCceeEEEEec---CC---CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 16 ERVKSVDLHP---SEP-WILASLYSGTVCIWNYQSQTMAKSFEVT---EL---PVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~V~~v~~sp---~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~---~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
..+..|.|+- +|. .++-+-..|.|.+|..........+.+- .. ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3456666653 344 4556666899999986544433333322 11 245788999999999999999999666
Q ss_pred CCCCcee--EEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCee-EEEEeecCCccEEEEEEecCCCCEEEEE
Q 002496 86 YNTMDKV--KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 86 ~~~~~~~--~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
...+... +..+.|.-.++...|+... +.+.+|++|+.+..||++.... .-+....|...|.++.-+|..+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 5554433 4778899999999998754 4778999999999999993322 3333556888899999999889999999
Q ss_pred ECCCcEEEEECCC-CCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCc-----EEEEecCCccCeEEE
Q 002496 162 SLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-----CVQTLEGHTHNVSAV 235 (915)
Q Consensus 162 ~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~i~~i 235 (915)
+.|-.|++||.++ +++++.-. ..++|+.+.++|.-...++++ +.-+-.+|-+.+.+. .....+.|.+-...-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~-CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAA-CMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHH-HHhcCceEEEecccccchheeeeccccccceeecc
Confidence 9999999999985 55555433 458999999999766533443 444446666665432 233444565555555
Q ss_pred EEeCCCCEEEEEE-cCCcEE-EEe
Q 002496 236 CFHPELPIIITGS-EDGTVR-IWH 257 (915)
Q Consensus 236 ~~~~~~~~l~~~~-~dg~v~-iwd 257 (915)
.|.....+|++++ .|..++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 5644335677754 344433 453
No 276
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=9.6e-10 Score=117.19 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=112.5
Q ss_pred eeeecccCCHHHHHHHHHHcCChhH----------------HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHH----
Q 002496 646 FELAIQLGRLEVAQEIATEVQSESK----------------WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYS---- 705 (915)
Q Consensus 646 f~~~l~l~~~~~A~~~a~~~~~~~~----------------w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~---- 705 (915)
.-|+-.|.+|++|..+|+...+|.. =...|+.-++.|+--.|...|.+++...+++++..
T Consensus 564 igmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~ 643 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEE 643 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHH
Confidence 4778899999999999987777552 12345555666777778888888888877776543
Q ss_pred hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002496 706 SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 706 ~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~ 782 (915)
.+.|-+.++.++....+...+..|+.+|..+.++++|+++|.+.+.+-+|+++||--.|.++-.+.+.|..+|...+
T Consensus 644 l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 644 LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH
Confidence 25566677888888888888999999999999999999999999999999999999999999999999999986544
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.9e-09 Score=113.23 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=150.1
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEec---CCCCEEEEEEc--------------------CCCCEEEEEEcCCeE
Q 002496 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVH--------------------PTLPYVLSSSDDMLI 123 (915)
Q Consensus 67 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s--------------------~~~~~l~~~~~dg~i 123 (915)
|-..++|....||.+++|+..+++....|.. -.+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887776642 23344555552 233467888899999
Q ss_pred EEEECCCCeeEEEEe-ecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002496 124 KLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.+|+...+....... ..|.+.|.++.++. +-..|.+++.|+.+..|+......+..+......+.+++++|++. .+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--IL 159 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--EE
Confidence 999999884333333 47899999999987 788999999999999999999998899998899999999999977 67
Q ss_pred EEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC-----CCEEEEEE-cCCcEEEEeC
Q 002496 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LPIIITGS-EDGTVRIWHA 258 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~-----~~~l~~~~-~dg~v~iwd~ 258 (915)
++++ +.|++||+.+++.+.+|.+|.++|.++.|..+ |.+++++. .+..+.+|-+
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 7766 68999999999999999999999999999887 66666543 3444666654
No 278
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3e-08 Score=108.58 Aligned_cols=464 Identities=14% Similarity=0.142 Sum_probs=245.3
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccC-eEEEEEeCCCCEEEEEEcCCc-----EEEEeCCCc-----
Q 002496 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDGT-----VRIWHATTY----- 261 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~i~~~~~~~~l~~~~~dg~-----v~iwd~~~~----- 261 (915)
|++++. .++.|+.+|.|.+.+-+ -+.++.++.+... |..+....+..+|++.++|+. |+||++..-
T Consensus 31 ~~s~~~--~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG--SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc--eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 444444 69999999999998843 5555777777776 444444444468888777654 899997532
Q ss_pred -cee---eee--ec--CCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccc
Q 002496 262 -RLE---NTL--NY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (915)
Q Consensus 262 -~~~---~~~--~~--~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~ 333 (915)
.++ ..+ .. ...++.+++.+.+-+.+|+|..+|.|...- |.++.........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~------------GDi~RDrgsr~~~--------- 166 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK------------GDILRDRGSRQDY--------- 166 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc------------Ccchhccccceee---------
Confidence 222 111 12 246788999999999999999999998852 2222221111100
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCE-EEEEcCCcEEEEEeecccccCccceeEEEEecCCcEEEEecCCeE
Q 002496 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF-VVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKI 412 (915)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~-lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~i 412 (915)
......+++.+++..+++. +.+.+..++.+|.+.... . .+
T Consensus 167 ---------------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p-----------------------~~ 207 (933)
T KOG2114|consen 167 ---------------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P-----------------------SL 207 (933)
T ss_pred ---------------eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c-----------------------ce
Confidence 1122346778888888776 555566777776554111 0 01
Q ss_pred EEeccCccceeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEE-ccccEEEEcCCCCEEEEEeCCeEEEEEe
Q 002496 413 KIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKY 491 (915)
Q Consensus 413 ~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~ 491 (915)
++.| ..+..-..+.|++. ..-+++++...+.|||.+...+--.+. +.-.-+.|..-|-++++..+.+.-.
T Consensus 208 ~~ld--~~G~~lnCss~~~~----t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~--- 278 (933)
T KOG2114|consen 208 KVLD--NNGISLNCSSFSDG----TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN--- 278 (933)
T ss_pred eeec--cCCccceeeecCCC----CccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC---
Confidence 1110 00000011133332 223666666678888876544444444 3333344444343333332221110
Q ss_pred cHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEE-EEECCEEeEEEecccceEEEEEEee
Q 002496 492 NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLN-YCVGGEVTTMFHLDRPMYLLGYLAS 570 (915)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (915)
.+ ..+.. ..+ + +-+|.-. ++.. |.. -++..... +...
T Consensus 279 -----------------~s--~s~ss----~~~---i-----~~~~d~~-n~~v~ys~--------vl~~l~d~--l~~w 316 (933)
T KOG2114|consen 279 -----------------TS--LSNSS----SNR---I-----FKAYDLR-NRYVLYSS--------VLEDLSDN--LIEW 316 (933)
T ss_pred -----------------cc--cCccc----hhh---e-----eehhhhc-CcccchHH--------hHHHHHHH--HHhc
Confidence 00 00000 000 0 0111111 1111 110 00000000 0011
Q ss_pred CCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcch------HHHHHHHHHhCCChhhhhhcccCccc
Q 002496 571 QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEH------HNSVARFLESRGMIEEAIEVATDPDY 644 (915)
Q Consensus 571 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~------~~~~~~~~~~~~~~~~al~~~~~~~~ 644 (915)
+..++++..++.+....--...-.......+..+..|..+.++-..+. |-..+.||-++|..+.|+.
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~------- 389 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATD------- 389 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-------
Confidence 235556666666554332111111122222444455544443322211 2334556777777777762
Q ss_pred eeeeec-ccCCHHHHHHHHHHcCChhHHHHHHHHHHHc--------CChhhHHHHHHHcCCcchhHHHHHhcCC----HH
Q 002496 645 RFELAI-QLGRLEVAQEIATEVQSESKWKQLGELAMST--------GKLEMAEGCMKQAMDLSGLLLLYSSLGD----AE 711 (915)
Q Consensus 645 ~f~~~l-~l~~~~~A~~~a~~~~~~~~w~~la~~al~~--------~~~~~A~~~y~~~~d~~~l~~l~~~~g~----~~ 711 (915)
+++ .+|.++-++-+ ++--+++.-++|..+.+.- -+..+-..||.+.+|.++|...-.. ++ .-
T Consensus 390 ---qYI~tI~~le~s~Vi-~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~-~~~g~~~f 464 (933)
T KOG2114|consen 390 ---QYIETIGFLEPSEVI-KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK-CDKGEWFF 464 (933)
T ss_pred ---HHHHHcccCChHHHH-HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc-CCCcceee
Confidence 222 34445555433 3334466667777765443 3455567899999999987664333 33 11
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH-HCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC
Q 002496 712 GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV-ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 712 ~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~-~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~ 782 (915)
.++..-++....+-...|.+++...++-+...++++ ..+.+.+|+.+-..+-++.+-+.+..+.+.|....
T Consensus 465 d~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~ 536 (933)
T KOG2114|consen 465 DVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHD 536 (933)
T ss_pred eHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhC
Confidence 255666777777778888888888887666666555 55668888888888877887777777877776543
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=1.3e-08 Score=111.79 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=164.3
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-E
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-l 105 (915)
+..+++++.+|.|.-+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 56788888899999999999998877665433222222 256788899999999999999999887765332 2221 1
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccE-----EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002496 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 180 (915)
.. .+..++.++.+|.|..||.+++...- ........+ .+.... +..++.++.+|.+..+|..+++....
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCceee-EEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeee
Confidence 12 24577888889999999999883322 222111111 111222 24677888889999999998876654
Q ss_pred EecCCC----C---eeEEEEEe--CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002496 181 LDAHQK----G---VNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 181 ~~~~~~----~---v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
...... . +..+.-+| .++ .+++++.+|.++.||..+|+.+...... ...... ..+..+++++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECC--EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCC
Confidence 321100 0 00010011 122 6888888999999999999887766521 122222 2456788888999
Q ss_pred cEEEEeCCCcceeeeeec-CCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
.|..+|..+|+.+..... ......+... .+..+++++.+|.+.++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 999999999988776532 2111222222 35688888888888773
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=7.5e-11 Score=137.11 Aligned_cols=199 Identities=16% Similarity=0.272 Sum_probs=161.6
Q ss_pred ccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002496 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 12 ~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
..|-..|.+|.=||..++-++|+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+.++..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 34566799999999999999999999999999999988877763 34789999999999999999999999999987 46
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.....+.|......+.|-. ..+++++ +++.+.+||.--......+-..|.+.++++++-| ..++|++|+.+|.|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEV 2360 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcE
Confidence 6667788988888888875 4566553 5789999996532222222278999999999999 88999999999999
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002496 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 168 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
++||++..+....++. +. .+.++++|+..|.++||++.....+.++.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh---hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999988776665553 22 22389999999999999998776666554
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=1.3e-08 Score=111.67 Aligned_cols=256 Identities=12% Similarity=0.050 Sum_probs=167.8
Q ss_pred CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE--
Q 002496 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-- 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-- 103 (915)
++..+++++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45678888889999999999999887665332 22221111 345778888899999999999998877654332211
Q ss_pred ---EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC---c---c---E-EEEEEecCCCCEEEEEECCCcEEEE
Q 002496 104 ---CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---Y---V-MQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 104 ---~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~---i-~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
+.... +..++.++.+|.+..+|.+++...-..-.... . . + .+..+ .+..+++++.+|.+..+
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEE
Confidence 11121 24678888889999999988843222111000 0 0 0 11112 24577778889999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEc
Q 002496 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~ 249 (915)
|..+++........ ....... .+. .+++++.+|.+..+|..+++.+........ ...+... .+..|++++.
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 99998876655421 1122222 233 588888999999999999988776632222 2222222 3568899999
Q ss_pred CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+|.|+++|..+|+.+..+..+...+..--...+ +.|++++.||.++.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 999999999999999888766544333322233 45888999998865
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=3.2e-09 Score=103.68 Aligned_cols=246 Identities=14% Similarity=0.192 Sum_probs=181.6
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
.++..+++|...|+.....|...-+++.+.|.+++||- .++++.-..+. ..+.+++++.+++....|++|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 34556778888888888889888899999999999994 45555544443 34678999999999999999999999998
Q ss_pred EECCCC---eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002496 126 WDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 126 wd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
+.+... ....+....|..+++.+-|+- ....+++.+.|..+.---.+++..+-...- ....+++.+.-. +.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~----~~ 168 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL----YA 168 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE----EE
Confidence 876532 133445567999999999987 778888888887765433344433211110 000111111100 34
Q ss_pred EEEeCCCeEEEEEC--CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCCccEEEEEE
Q 002496 203 ITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGY 279 (915)
Q Consensus 203 ~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~ 279 (915)
..|...|.|.+-.+ ..-..+.++.+|.+.+++++|.|....+++|..|..+.+||+...+ ....+.++...|..++.
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 45555566555444 3456788999999999999999999999999999999999987555 44567788888999998
Q ss_pred ecCCCEEEEEecCCeEEEec
Q 002496 280 MKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 280 ~~~~~~l~~~~~dg~v~i~~ 299 (915)
-+--+.+.+++.||.|.+|.
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88889999999999999985
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=3.6e-10 Score=131.65 Aligned_cols=196 Identities=17% Similarity=0.310 Sum_probs=160.6
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (915)
+-..|.++.=+|...+.++|+.||.+++|....++.+..+. ..+..++.+.|+.+|+.+.++..||.+.+|.... ++
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 44568888889999999999999999999999998888775 3347899999999999999999999999999873 56
Q ss_pred EEEeecCCccEEEEEEecCCCCEEEEEE---CCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 135 TQIFEGHSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 135 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
......|+.....+.|-. ..+++++ .++.+.+||..-.. .-..-..|.++++++++.|... ++++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCCcCc
Confidence 667778888888888863 5666654 46889999964322 2222378999999999999877 8999999999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002496 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
|++||++..+.++.++. ++ ...++++|+..|.++||++....++.++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998777766653 44 45689999999999999999887776654
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=8.9e-08 Score=116.23 Aligned_cols=238 Identities=10% Similarity=0.132 Sum_probs=159.5
Q ss_pred EEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEe-c-------------CCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002496 19 KSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEV-T-------------ELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 19 ~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~-~-------------~~~v~~l~~s~~~~~l~~~~~-dg~i~ 82 (915)
..+++++++. .+++-..++.|.+||.. +..+..+.. . -.....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688988654 44444557889999965 544444332 1 113578999999887766654 57899
Q ss_pred EEECCCCceeEEEecC-----------------CCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecC---
Q 002496 83 VYNYNTMDKVKVFEAH-----------------TDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--- 141 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 141 (915)
++|..++. +.++.+. -.....++++| ++..+++.+.++.|++||..++.. . .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-R-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-E-EEecCCcc
Confidence 99987754 3333210 12346799999 455556667789999999987632 2 11111
Q ss_pred ------------CccEEEEEEecCCCC-EEEEEECCCcEEEEECCCCCCceEEec---------------------CCCC
Q 002496 142 ------------SHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTLDA---------------------HQKG 187 (915)
Q Consensus 142 ------------~~~i~~~~~~p~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~---------------------~~~~ 187 (915)
-.....++++| +++ ++++-+.++.|++||+.++.......+ .-..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 12345789999 555 666667789999999987543211100 0112
Q ss_pred eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec-------------CCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------GHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
...++++++|+ ++++-+.+++|++||..++....... ........++++++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCc--EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 45788888876 77888889999999998766543221 1122467899999999888888899999
Q ss_pred EEeCCCcce
Q 002496 255 IWHATTYRL 263 (915)
Q Consensus 255 iwd~~~~~~ 263 (915)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988765
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=4.8e-08 Score=92.29 Aligned_cols=238 Identities=12% Similarity=0.008 Sum_probs=160.4
Q ss_pred EEEEcCC-----CCeEEEEEcCCcEEEEECCCCce-eEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcee
Q 002496 20 SVDLHPS-----EPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 20 ~v~~sp~-----~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
.|.|-|- -.+||.|+..|...+|...+.+. .+....|...|+-+.=.. ....+..++.|.++++.++.-+..-
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4556662 34799999999999999886543 333333444333222111 2234667788888888887644332
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCee-EEE-EeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
....-..-.+.++.++++++++++.++...|..|.++.... ... ........-.+..|+. ....||+++.||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEE
Confidence 22221112378999999999999999999999999875422 222 2233344457788988 78899999999999999
Q ss_pred ECCCCCCce-----EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-------Cc-cCeEEEEE
Q 002496 171 NLGSPDPNF-----TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HT-HNVSAVCF 237 (915)
Q Consensus 171 d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~-~~i~~i~~ 237 (915)
|++...... +-..|.+.+..+.|++.|.-.+|+..-.-+.+.+.|++++...+.+.. |. ..|....|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 998754321 224578899999999887766777777788999999999876554432 22 23777778
Q ss_pred eCCCCEEEEEEcCCcEEEEeCC
Q 002496 238 HPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+.++..+.+.+++ .+.=|++.
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cCCCcccccccch-hhheeecc
Confidence 8777766666544 34455544
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=2e-06 Score=85.93 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=135.1
Q ss_pred CCcEEEEECCCC--cee-EEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC--CceeE--EEecCCCCEEEE
Q 002496 36 SGTVCIWNYQSQ--TMA-KSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT--MDKVK--VFEAHTDYIRCV 105 (915)
Q Consensus 36 dg~v~iwd~~~~--~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l 105 (915)
+.-|.+|++.+. ++. ..+-...+.++-++|+|+++.|.++-. +|.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998743 221 112235667889999999999988855 46787777764 44322 222223344889
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCeeEEE--EeecCCcc----------EEEEEEecCCCCEEEEEEC-CCcEEEEE
Q 002496 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQ--IFEGHSHY----------VMQVTFNPKDTNTFASASL-DRTIKIWN 171 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~~----------i~~~~~~p~~~~~l~~~~~-dg~i~v~d 171 (915)
+++++|++++++.. .|.|.++-+.....+.. ....|.+. +....+.| +++++++... --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998865 58899998865212221 12234333 77888999 8888887664 34689999
Q ss_pred CCCCCCceEE---ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecC---------CccCeEEEEEe
Q 002496 172 LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEG---------HTHNVSAVCFH 238 (915)
Q Consensus 172 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~---------~~~~i~~i~~~ 238 (915)
+..++....- -....+...|.|+|+++- ..++.--+++|.+|.+... ..+..++. .......|.++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKY-AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcE-EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9876543211 134456789999999983 2333445889999998763 22222221 12345567777
Q ss_pred CCCCEEEEEE
Q 002496 239 PELPIIITGS 248 (915)
Q Consensus 239 ~~~~~l~~~~ 248 (915)
|+|++|.++.
T Consensus 253 ~dGrFLYasN 262 (346)
T COG2706 253 PDGRFLYASN 262 (346)
T ss_pred CCCCEEEEec
Confidence 7777776653
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=2.1e-07 Score=94.85 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=116.6
Q ss_pred cCCCCEEEEEEcCCCCeEEEEEcCC-cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002496 13 QRSERVKSVDLHPSEPWILASLYSG-TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
+|.++|.-..+..+++-++.|..|| .+-|||..+++. +.+...-+.|.++..+|+|++++++.....|.++|+.+|+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 5778899999999988999999998 899999877754 55666778899999999999999999999999999999988
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
...-+...+-|+.+.|||++++++-+--+ ..|+++|+.+++ ...... ..+.=.+-+|.| ++++|..-+
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 77766777889999999999999977655 469999999873 332222 223335567777 666665443
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=2.9e-08 Score=95.48 Aligned_cols=238 Identities=17% Similarity=0.284 Sum_probs=162.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
...|+++.|...|.++++|...|.|.+|.-+... ....|++|. ..|..+.|-.++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754322 122344443 2477788876543 57777
Q ss_pred EcCCeEEEEECCCCe-----------------------------------------eEEEEe-ecCCccEEEEEEecCCC
Q 002496 118 SDDMLIKLWDWEKGW-----------------------------------------MCTQIF-EGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~-----------------------------------------~~~~~~-~~~~~~i~~~~~~p~~~ 155 (915)
+.|.+|++|.+.... .+.++. ..|.-.|.++.|+. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999865320 000111 34666688999987 66
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE---ecCC-----CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE------
Q 002496 156 NTFASASLDRTIKIWNLGSPDPNFTL---DAHQ-----KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (915)
Q Consensus 156 ~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (915)
..++++ .|-.|.+|++.-....+.+ ++|. .-|++..|+|.... ++.-.++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCchh
Confidence 666654 5788999998655443333 2232 34778888887654 677778899999999984221
Q ss_pred EE----------EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc-eeeeeecCC------------ccE---E
Q 002496 222 VQ----------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL------------ERV---W 275 (915)
Q Consensus 222 ~~----------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~------------~~v---~ 275 (915)
+. -+.+-...|+.+.|+++|+++++-+.- +|+|||++..+ ++.++..|. ..| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 10 112233568899999999999987754 89999987644 555554331 222 3
Q ss_pred EEEEecCCCEEEEEecCCeEEEe
Q 002496 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
.+.||.|.+.+.+|+......++
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 58899999999999888777774
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=9.2e-09 Score=98.85 Aligned_cols=240 Identities=19% Similarity=0.368 Sum_probs=166.5
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc-----eeEEEEecCC------------CEEEEEEeCCC--CEEEE
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTEL------------PVRSAKFVARK--QWVVA 74 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~l~~s~~~--~~l~~ 74 (915)
..+.|+++.|...|.+|++|...|.|.+|.-+... ....|++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999854422 2334555543 47888997765 35677
Q ss_pred EeCCCeEEEEECCCC------------------c-------------------ee-----EEE-ecCCCCEEEEEEcCCC
Q 002496 75 GADDMFIRVYNYNTM------------------D-------------------KV-----KVF-EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 75 ~~~dg~i~vwd~~~~------------------~-------------------~~-----~~~-~~~~~~i~~l~~s~~~ 111 (915)
.+.|.+|++|.+... + .+ +.+ ..|.-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999976321 0 00 111 2566678899999988
Q ss_pred CEEEEEEcCCeEEEEECCCCeeEEEE--eecCC-----ccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC------c
Q 002496 112 PYVLSSSDDMLIKLWDWEKGWMCTQI--FEGHS-----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------N 178 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~-----~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~------~ 178 (915)
..++++ +|-.|.+|+++-......+ ...|. .-|++..|+|...+.|.-++..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777665 5678999998743222222 23332 34788999998888999999999999999984321 1
Q ss_pred eE----------EecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecCCc------------cCe---
Q 002496 179 FT----------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT------------HNV--- 232 (915)
Q Consensus 179 ~~----------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~------------~~i--- 232 (915)
.. +......|..+.|+++|. |+++- +--+|++||.+. ..++.++..|. ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 11 112234677889999887 55554 457899999986 45677764432 122
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEe
Q 002496 233 SAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd 257 (915)
..+.|+.+.+.+++|+..+..-+|-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3477888888999999887776665
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=3.2e-09 Score=113.36 Aligned_cols=282 Identities=18% Similarity=0.197 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC-CceeEEEEe-cCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC--
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT-- 88 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~-~~~~v~~l~~s~~~--~~l~~~~~dg~i~vwd~~~-- 88 (915)
.+++.++.++|.|+-+|.++.-| +.|-|+.. +...+-+.. ..-.|-...|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 35678899999999999988766 55666554 333333331 12346778888754 3334444445566898753
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 89 -MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
...-..+.+|...|+.+.|+|+.+ .+++++.|-.+..||+++.......+..-...-..+.|+-.+++.+++. ..+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND 181 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCc
Confidence 223345568999999999999765 6789999999999999987666666555555678899998777777664 4567
Q ss_pred EEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEE
Q 002496 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 167 i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l 244 (915)
|.+||++.+ .+...+++|-..|+.+.|...... .+.+.+.||+|++||...... .........+|+.-++.|-|.-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 999999765 466778888888888888765433 588999999999999875322 11122245567777777755422
Q ss_pred EE--EEcCCcEEEE---------eCCC-cceeeeeecCCccEEEEEEecCCC----------EEEEEecCCeEEEec
Q 002496 245 IT--GSEDGTVRIW---------HATT-YRLENTLNYGLERVWAIGYMKSSR----------RIVIGYDEGTIMVKI 299 (915)
Q Consensus 245 ~~--~~~dg~v~iw---------d~~~-~~~~~~~~~~~~~v~~i~~~~~~~----------~l~~~~~dg~v~i~~ 299 (915)
++ .-.+..+.++ +..+ .+.+.++.+|...|....|...+. .|++-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 21 1112234443 3333 346788889988887777665433 688999999999984
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=7.7e-07 Score=86.13 Aligned_cols=235 Identities=11% Similarity=0.150 Sum_probs=139.7
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCC--ceeEEEEecC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTE---LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 94 (915)
.++.+++|+.||+.. |..|.|-..++. ..+.....+. ..=+-++||||+..||.+...|+|++||+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 367789999888865 778888876543 3333333332 2357899999999999999999999999875 33333
Q ss_pred Eec-------CCCCEEEEEEcCCC------CEEEEEEcCCeEEEEECCC----CeeEEEEee---cCCccEEEEEEecCC
Q 002496 95 FEA-------HTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWEK----GWMCTQIFE---GHSHYVMQVTFNPKD 154 (915)
Q Consensus 95 ~~~-------~~~~i~~l~~s~~~------~~l~~~~~dg~i~iwd~~~----~~~~~~~~~---~~~~~i~~~~~~p~~ 154 (915)
+.. -...|..|.|.+.. ..|++-..+|.++-|-+.. +......+. .+...|.++.|+| .
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-K 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-C
Confidence 331 12457777775532 1466667778887776532 112222222 2467899999999 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE-EEEeCCC------eEEEEECCCCcEEEEecC
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL-ITGSDDH------TAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg------~i~iwd~~~~~~~~~~~~ 227 (915)
.++|++|+.... ..+. -.....++++-....+... +. ++...++ +..+|.+-+.+.......
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccceeeeecccc
Confidence 677777665322 0000 0011222222222211111 11 1111111 112333322222111122
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002496 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 228 ~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
....|..+..||||+.|++...+|.|.+|++.+-++.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 45679999999999999999999999999998777665544
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1e-07 Score=104.13 Aligned_cols=190 Identities=11% Similarity=-0.032 Sum_probs=123.6
Q ss_pred CEEEEEEcCCCCe-EEEEEcC---CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 002496 17 RVKSVDLHPSEPW-ILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTM 89 (915)
Q Consensus 17 ~V~~v~~sp~~~~-la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~~ 89 (915)
.+....|||||+. ++..+.. ..|.++|+.+++..... ...+......|+|||+.++.... +..|.++++.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6789999999985 6654443 46999999888665443 35566777899999998875533 357888898877
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECC--
Q 002496 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-- 164 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-- 164 (915)
+. ..+..+........|+|||+.|+..+.. | .|.++|+.++. ..+.... ... ...|+| +++.++..+..
T Consensus 268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~-g~~--~~~~SP-DG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFH-GKN--NSSVST-YKNYIVYSSRETN 341 (419)
T ss_pred cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccC-CCc--CceECC-CCCEEEEEEcCCC
Confidence 64 3444344334456899999988876643 2 68888988773 3333221 111 248999 77777666543
Q ss_pred -------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC-C--CeEEEEECC
Q 002496 165 -------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQ 217 (915)
Q Consensus 165 -------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~ 217 (915)
..|.+.|+.++.. ..+... .......|+|+|.. ++.... . ..+.++++.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~--I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGS--IMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCE--EEEEEccCCcEEEEEEecC
Confidence 3678888877754 333322 23345889999984 433332 2 236666665
No 293
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.2e-06 Score=85.60 Aligned_cols=251 Identities=12% Similarity=0.146 Sum_probs=165.1
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcC---CcEEEEECCC--Ccee--EEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002496 11 LAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQS--QTMA--KSFEVTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~~~~la~~~~d---g~v~iwd~~~--~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~ 82 (915)
+..+.+.++-|+|+|+++.|.++..+ |.|.-|.+.. |++. ........+-+.++++++|++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 33567789999999999999988654 6787777764 5432 222223344588999999999999876 68999
Q ss_pred EEECCC-CceeE--EEecCCCC----------EEEEEEcCCCCEEEEEEc-CCeEEEEECCCCeeEEEE---eecCCccE
Q 002496 83 VYNYNT-MDKVK--VFEAHTDY----------IRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FEGHSHYV 145 (915)
Q Consensus 83 vwd~~~-~~~~~--~~~~~~~~----------i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~~i 145 (915)
++-++. |.... ..-.|.+. +.+..+.|++++|+++.- --.|.+|++..+. +... ........
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc-cccccccccCCCCCc
Confidence 998865 33321 22235444 888999999999988753 2369999998662 2211 11233456
Q ss_pred EEEEEecCCCCEEEE-EECCCcEEEEECCCC-CCceEEe---------cCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEE
Q 002496 146 MQVTFNPKDTNTFAS-ASLDRTIKIWNLGSP-DPNFTLD---------AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKV 213 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~-~~~dg~i~v~d~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~i 213 (915)
..+.|+| ++++..+ +-.+++|.+|..+.. .....++ ........|.++++|+ +|.++.. ...|.+
T Consensus 194 RHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--FLYasNRg~dsI~~ 270 (346)
T COG2706 194 RHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--FLYASNRGHDSIAV 270 (346)
T ss_pred ceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--EEEEecCCCCeEEE
Confidence 8899999 6666554 455899999998764 1122221 1234456778888887 5555432 346777
Q ss_pred EECCC--CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCC-cEEEEeC--CCcceee
Q 002496 214 WDYQT--KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHA--TTYRLEN 265 (915)
Q Consensus 214 wd~~~--~~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~v~iwd~--~~~~~~~ 265 (915)
|.+.. ++. +.....+......+.++|.|++|+++.+++ .|.+|.. .+|++..
T Consensus 271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 77653 322 222233444467899999999999888764 4777754 4566543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=8.3e-09 Score=103.44 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=121.0
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTM 89 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~~~---dg~i~vwd~~~~ 89 (915)
.+..+..+|.+++||++..+....++++.... ++..... ...-+++.|..+.....++.. ...+.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556778899999999888887777765443 2233322 233455666666655555544 456666666554
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEE
Q 002496 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (915)
.. ..+-+|-..++.++|+||+++|+++..|..|++-.............||...|..++..+ +..|++++.|++|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 33 334479999999999999999999999999999988876566667778999999999985 667999999999999
Q ss_pred EECCCCCCceEEe
Q 002496 170 WNLGSPDPNFTLD 182 (915)
Q Consensus 170 ~d~~~~~~~~~~~ 182 (915)
||+.+++...++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998876553
No 295
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=2.9e-06 Score=80.24 Aligned_cols=191 Identities=12% Similarity=0.006 Sum_probs=115.9
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++.|+..+.+.--|..+|+++..-. -..++.+-+.- -|++++.|+.+|.+++.+.+||.+...+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577888889999999999998876533 23334433333 577899999999999999999988887764333223345
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe--cC
Q 002496 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AH 184 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~ 184 (915)
..+++..|..|+.|++.+..|.++. .+....+-..+...+-+..| ....|..+...|.+.--..+... ...+- ..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~-~~~~w~~~~ 177 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYS-STEFWAATR 177 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCC-cceehhhhc
Confidence 6778999999999999999999886 33333333333334445666 34445555555655544443321 11111 11
Q ss_pred CCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002496 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
.+++..--..- +. .+..+.-||.+.-+| ..|+.+..+.
T Consensus 178 ~~PiF~splcv-~~--sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 178 FGPIFASPLCV-GS--SVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred CCccccCceec-cc--eEEEEEeccEEEEEc-CCCcEEEeec
Confidence 22222110000 11 355556666666666 4555555443
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.4e-07 Score=99.20 Aligned_cols=210 Identities=15% Similarity=0.022 Sum_probs=131.3
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE-EEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW-VVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
..|.+-|..... .+.+... +......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 356666654333 3334333 37788999999985 654433 3579999998887655543 455567788999998
Q ss_pred EEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCC
Q 002496 113 YVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 113 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~ 186 (915)
.|+.... +..|.++|+.++ ...+ +..+........|+| |++.|+..+. .+ .|.+.|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~~~-LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TLTQ-ITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cEEE-cccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 7765432 357888898877 3333 333333344568999 7776666553 33 588888887765333221 11
Q ss_pred CeeEEEEEeCCCcCEEEEEeCC---------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---cEE
Q 002496 187 GVNCVDYFTGGDKPYLITGSDD---------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVR 254 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg---~v~ 254 (915)
....|+|+|+. ++..... ..|.+.|+.++.. +.+... .......|+|||+.|+..+..+ .+.
T Consensus 322 --~~~~~SPDG~~--Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 322 --NNSSVSTYKNY--IVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred --cCceECCCCCE--EEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 12489999984 5444332 3688889887764 333322 2233588999999877665432 355
Q ss_pred EEeCC
Q 002496 255 IWHAT 259 (915)
Q Consensus 255 iwd~~ 259 (915)
+.++.
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 66654
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.2e-09 Score=110.52 Aligned_cols=280 Identities=12% Similarity=0.135 Sum_probs=189.2
Q ss_pred hhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002496 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i 81 (915)
..+.||+..|+.++--.+.+-+++++.|.+|++|.++.. .+..+++.|+.+|..+.|-.+-++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 457899999999988888888999999999999998642 3556677899999999999998877754 7889
Q ss_pred EEEECCCCceeEEEe--cCCCCEEEEEEcC--CCCEEE-EEEcCCeEEEEECCCCeeEEEEe-----ecCCccEEEEEEe
Q 002496 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHP--TLPYVL-SSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFN 151 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~--~~~~~i~~l~~s~--~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~ 151 (915)
.+||.--++.+..+. ...+.+..+..-+ +...++ .|+...+|+++|.+.. .....+ .+.+..+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEec
Confidence 999987776655332 1112222333333 334444 4477899999999876 222222 2344668899999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEE-EECCCCcEEEEecCCcc
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV-WDYQTKSCVQTLEGHTH 230 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~ 230 (915)
| .++.++.+-.+|.|.+.|.++|+.+..+.........++- |... .++....|.++.+ |..-.|....+.+....
T Consensus 886 ~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq--~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 886 D-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQ--ALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred c-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhH--HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 8 8999999999999999999999877766655544444432 3333 5777777888888 87666655544443322
Q ss_pred CeEEEEEeCCCCEEEEEEcCCcEEEEeCCC----cceeeeee--cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 231 NVSAVCFHPELPIIITGSEDGTVRIWHATT----YRLENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 231 ~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
+..- .-.-|+.+++......+.+|--.. ...+..+. ...+..++++.-|-..-+..|...|.|.+
T Consensus 962 pahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2111 112355677776666777774211 11111111 12356788888888777888888888765
No 298
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=8.9e-07 Score=107.69 Aligned_cols=234 Identities=10% Similarity=0.094 Sum_probs=157.7
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEECCCCceeEEEec--------------CCCCEEEEEEcCCCCEEEEEEc-CCeEE
Q 002496 61 RSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKVKVFEA--------------HTDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (915)
Q Consensus 61 ~~l~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~~~~l~~~~~-dg~i~ 124 (915)
..++++++ +..+++-+.++.|.+||.. ++.+..+.. +-.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788875 5556666678899999976 454444432 1123678999998887766654 57799
Q ss_pred EEECCCCeeEEEEeecC-----------------CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec----
Q 002496 125 LWDWEKGWMCTQIFEGH-----------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---- 183 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~-----------------~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---- 183 (915)
++|..++ ... .+.+. -.....++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~-~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNE-TVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCC-EEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876 322 22110 1123578999866777788888899999998765422 2211
Q ss_pred -----------CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC---------------------CccC
Q 002496 184 -----------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---------------------HTHN 231 (915)
Q Consensus 184 -----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~ 231 (915)
.-.....++++|+++. ++++-+.++.|++||+.++.......+ ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1123567899998764 455666779999999987653211100 0112
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec-------------CCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 232 VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 232 i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
..+++++++|.++++-+.++.|++||..++........ .......++++++|+.+++.+.++.|+++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46899999999888888899999999887765433221 12356789999999988888888888885
Q ss_pred c
Q 002496 299 I 299 (915)
Q Consensus 299 ~ 299 (915)
.
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 4
No 299
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.3e-09 Score=110.48 Aligned_cols=239 Identities=14% Similarity=0.177 Sum_probs=166.9
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002496 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 50 ~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
+..+.+|...|+.++-..+.+-+++++.|++|++|.++. ..+..++..|..+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778988899888888888899999999999999863 23566778999999999999998887765 788
Q ss_pred EEEEECCCCeeEEEEee----cCCccEEEEEEecCCCCEEE-EEECCCcEEEEECCCCCCceEEe-----cCCCCeeEEE
Q 002496 123 IKLWDWEKGWMCTQIFE----GHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVD 192 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~----~~~~~i~~~~~~p~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~v~~~~ 192 (915)
|.+||.--++...+... +..+.|.|+.-- +...++ .++...+|+++|.+...-...++ +....+.+++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99999766533332221 112234443211 333444 44778999999999887665553 2335578899
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEE-EeCCCcceeeeeecCC
Q 002496 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI-WHATTYRLENTLNYGL 271 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~ 271 (915)
..+.|+ .++++-++|.|.+.|.++|+.+..++...-....++- |..+.++....|.++.+ |....+......+.+.
T Consensus 884 Va~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 884 VADKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred eccCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 988888 6999999999999999999998887765554444443 44467777778888988 9887777665555443
Q ss_pred ccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 272 ERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 272 ~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
.+..-+ ..-|..+++......+.+
T Consensus 961 epahfl--qsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 961 EPAHFL--QSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred cchhhh--hccCceeEEeccCcEEEE
Confidence 322111 112445555555554544
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.95 E-value=2.4e-06 Score=87.32 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=148.0
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEc-CCCCEEEEEEcCCeEEEEECCCCeeEEEEee
Q 002496 62 SAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH-PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 62 ~l~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
+..|.+ ++.++++-...+.|..|+..+++... +.... ...+.+. ++ ..++++...+ +.++|..++ .......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC-cEEEEee
Confidence 578998 66666666678999999998865433 33222 7778888 55 5666666655 566698887 3333333
Q ss_pred c-----CCccEEEEEEecCCCCEEEEEECC--------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 140 G-----HSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 140 ~-----~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
. .......+++.| ++++.++.... |.|..++.. ++. ..+...-...+.++|+|+++. ++++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~-lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKT-LYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSE-EEEEET
T ss_pred ccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchh-eeeccc
Confidence 2 346688999999 78877776543 557777776 443 333334566789999999873 445667
Q ss_pred CCCeEEEEECCCC-c------EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE
Q 002496 207 DDHTAKVWDYQTK-S------CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 207 ~dg~i~iwd~~~~-~------~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
..+.|..+++... . ....+....+..-.+++..+|++.++....+.|.+++.. |+.+..+..+...+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7889999998532 2 122222222347789999999988888889999999976 9988888888678999999
Q ss_pred e-cCCCEEEEEe
Q 002496 280 M-KSSRRIVIGY 290 (915)
Q Consensus 280 ~-~~~~~l~~~~ 290 (915)
. ++.+.|.+.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6667776654
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=6.3e-10 Score=120.77 Aligned_cols=266 Identities=13% Similarity=0.177 Sum_probs=187.3
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC--eE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--FI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg--~i 81 (915)
+|...+.+..|...-+|++|+-+.+.|++|+..|.|++|++.+|.......+|.++|+-+.-+.+|..+++.+... ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5667788899999999999999999999999999999999999999999999999999999999999888765533 57
Q ss_pred EEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC---CccEEEEEEecCCCCE
Q 002496 82 RVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH---SHYVMQVTFNPKDTNT 157 (915)
Q Consensus 82 ~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~~ 157 (915)
.+|+..+ +...++|. .-.++.|+...+.-+.|+......+||+.++..+...+.+. +-.-.+..|+| ...+
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccce
Confidence 7898763 44445554 24578888776555666655678999999985554434322 22236788999 5544
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002496 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~ 237 (915)
++ .|| .+||.+..+.+..+...... -.-.|+|+|.. ++..+ -|||+++.+.++.+..-. -..+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~e--VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNE--VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCce--EEeec-----hhhhhHHHHHHhcCcccc--ceEEEe
Confidence 44 455 47999988777766543322 23358898874 66554 489999988877665332 356788
Q ss_pred eCCCCEEEEEEc--C---------------CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 238 HPELPIIITGSE--D---------------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 238 ~~~~~~l~~~~~--d---------------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
+..|..+...-. | ...+-++...++.+.++... ..+..++-+|...++++-.
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 888875543320 0 12445555556666666544 4566677777766666543
No 302
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=7.4e-09 Score=97.31 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=105.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCcee-EEEEecCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEECC
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVARKQWVVAGA-----DDMFIRVYNYN 87 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~-----~dg~i~vwd~~ 87 (915)
|+++-.+-+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++. .-+..+.|++.
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence 3333333333445667999999999999997652111 11111111112223333444444432 12345566654
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 88 TMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
..+....-....+.|.+++-+|..+ .+++|+.||.+.+||+++...+...+..|...+..+.|+|+++..|++++.||.
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 3332222222234599999999654 567888999999999998877778888999999999999999999999999999
Q ss_pred EEEEECCC
Q 002496 167 IKIWNLGS 174 (915)
Q Consensus 167 i~v~d~~~ 174 (915)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999754
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=5.7e-07 Score=91.82 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=145.7
Q ss_pred CCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 36 SGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
+|.|..||..+|+.+....... ....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999998886421 222211 344677788889999999999999999888775 22222111 223556
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCC---ccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCe--
Q 002496 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-- 188 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-- 188 (915)
+++++.++.|..+|..++...-....... .......... .++.++++..++.|..+|+.+|+.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 78888889999999998855444222221 1112222222 36788888889999999999999888776543221
Q ss_pred --------eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 189 --------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 189 --------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
..-... .+. .+..++.++.+..+|..+++.+.... ...+.. ...+.+..|++++.++.|.+||+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVI-SDG--RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEEC-CTT--EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEE-ECC--EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 111111 222 57777777754444999998765433 222222 2456777888888999999999999
Q ss_pred cceeee
Q 002496 261 YRLENT 266 (915)
Q Consensus 261 ~~~~~~ 266 (915)
|+....
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 987654
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=3.3e-07 Score=86.79 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=148.4
Q ss_pred EcCCcEEEEECCCCc--eeEEEEecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcee-EEEecCCCCEEEE
Q 002496 34 LYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKV-KVFEAHTDYIRCV 105 (915)
Q Consensus 34 ~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~l 105 (915)
.....|.+|++-+.. .+... ..+.|-| .-.+|+.|+..|...+|...+.+.. .....|...|+-.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 345568888875543 23322 2344444 4457999999999999999876543 2333444433222
Q ss_pred EEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-c-e-EE
Q 002496 106 AVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-N-F-TL 181 (915)
Q Consensus 106 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~-~-~-~~ 181 (915)
.=..+ .-.+..++.|.++++.+++.+.. ........-.+.++.+++ ++.++++.+....|..|.+..... + . ..
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~-~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSN-KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcc-cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 11111 22477788888999988876522 222211112378899999 999999999999999998865432 1 2 22
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEE-E----EecCCccCeEEEEEeCCCC--EEEEEEcCCcEE
Q 002496 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-Q----TLEGHTHNVSAVCFHPELP--IIITGSEDGTVR 254 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~----~~~~~~~~i~~i~~~~~~~--~l~~~~~dg~v~ 254 (915)
......-.+..|+.... .+++++.||++.|||++..... . +-..|.+.+..+.|++.|. +|+..-.-+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred cccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 33444556778877665 7999999999999999874432 2 2234788999999998765 455544567899
Q ss_pred EEeCCCcceeeeeecC
Q 002496 255 IWHATTYRLENTLNYG 270 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~ 270 (915)
+.|+++++..+.+...
T Consensus 278 v~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEcccCceeeEEecC
Confidence 9999999866555443
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=1.6e-06 Score=95.43 Aligned_cols=259 Identities=11% Similarity=-0.031 Sum_probs=158.6
Q ss_pred CCCeEEEEEcCCcEEEEECCCCceeEEEEecCC-CE-E-----EEE--EeCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 002496 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL-PV-R-----SAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v-~-----~l~--~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 96 (915)
.+..+++++.+|.|.-+|..+|+.+........ .. . .+. -.-.+..++.++.+|.+..+|.++|+.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356788888889999999999998876653320 00 0 000 01135678888899999999999999888776
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCcc----EEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY----VMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
.......+... .+..+++++.+|.|..+|..++...-..-...... ..+... .+..++.++.+|.+..+|.
T Consensus 148 ~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 148 VAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEc
Confidence 43321111122 24467788889999999999884332221111000 011111 1235777788999999999
Q ss_pred CCCCCceEEecCCC-------CeeEEEEEe--CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002496 173 GSPDPNFTLDAHQK-------GVNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 173 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 243 (915)
.+++.......... ....+..+| .++ .+++++.+|.+..+|..+|+.+...... ....+.. .+..
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~ 296 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGR 296 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCE
Confidence 98887665431110 000111111 122 5777788999999999999887765421 1112222 3557
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002496 244 IITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
|+.++.+|.+..+|..+|+.+......... ..+... .+..|++++.+|.+.+
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 888888999999999999877654322111 122222 2456777888887765
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.88 E-value=4.2e-06 Score=85.58 Aligned_cols=217 Identities=13% Similarity=0.117 Sum_probs=143.9
Q ss_pred EEEEcC-CCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002496 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV-ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 20 ~v~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
++.|.+ ++.++++-...+.|+.|+..++... .+.... ...+++. ++ ..++++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 6666666556899999998777543 233222 6777888 56 5556665555 45569998866544442
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEEcC--------CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE-EEEEC
Q 002496 98 -----HTDYIRCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASL 163 (915)
Q Consensus 98 -----~~~~i~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~~~~~ 163 (915)
.......+++.|+|++.++.... |.|..++.. + ....... .-.....++|+| +++.| ++-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECC-cchheeecccc
Confidence 34567899999999976666543 567777777 4 3333333 235568999999 66655 56677
Q ss_pred CCcEEEEECCCCCC-c---eEE-ecCC--CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002496 164 DRTIKIWNLGSPDP-N---FTL-DAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 164 dg~i~v~d~~~~~~-~---~~~-~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
.+.|..+++..... . ..+ .... +....+++..+|+ +.++....+.|.++|.+ |+.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88899999864332 1 122 2122 2367888877776 67777788999999987 888888876666899999
Q ss_pred Ee-CCCCEEEEEE
Q 002496 237 FH-PELPIIITGS 248 (915)
Q Consensus 237 ~~-~~~~~l~~~~ 248 (915)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 5666555543
No 307
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=1.5e-08 Score=108.45 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=176.5
Q ss_pred EEEEEEcCCC--CeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce
Q 002496 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 18 V~~v~~sp~~--~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
|-.+.|+|.- ++-++...+..-.||++.. ...-..+.+|...|+.+-|+|.. ..+++++.|..+..||+.+-..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 5667787743 4444555566677898753 23445577899999999999976 4678999999999999987543
Q ss_pred -eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 92 -VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 -~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
+..+..-......++|+-..+.+++.+....|.+||.+.+..+...+++|...|..+.|+......+.+++.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 3344444445678999987777877788889999999988888999999999999999987666788999999999999
Q ss_pred ECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE---------CCC-CcEEEEecCCccCeEEEEEeC
Q 002496 171 NLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD---------YQT-KSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 171 d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~i~~i~~~~ 239 (915)
|....... ........+|..-++.|-|++.++.-.-.+..+-+++ ..+ .+++.+|.+|...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 98654322 2223355677777788877763333222223344433 322 457899999999887766644
Q ss_pred CCC----------EEEEEEcCCcEEEEeCCC
Q 002496 240 ELP----------IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 240 ~~~----------~l~~~~~dg~v~iwd~~~ 260 (915)
.+. .|++=+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 322 689999999999997653
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.83 E-value=1.8e-06 Score=95.04 Aligned_cols=258 Identities=11% Similarity=0.066 Sum_probs=161.3
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC- 104 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~- 104 (915)
+..+++++.+|.+.-+|.++|+.+....... .+.+ ... .+..+++++.++.|..+|..+|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567778889999999999999887766432 2221 111 2456777888999999999999998877632111100
Q ss_pred EEEcC--CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC---c---cEEEEEEec-CCCCEEEEEECCCcEEEEECCCC
Q 002496 105 VAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---YVMQVTFNP-KDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 105 l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~i~~~~~~p-~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
..-+| .+..++.++.+|.+..+|..++...-..-.... . ....+..+| -.+..+++++.+|.+..+|..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00111 133577788899999999888733221100000 0 000111111 02446667778999999999999
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
+....... .....+.. .+. .++.++.+|.+..+|..+|+.+........ ...+.... +..|+.++.+|.|.
T Consensus 277 ~~~W~~~~--~~~~~~~~--~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~ 348 (394)
T PRK11138 277 QIVWKREY--GSVNDFAV--DGG--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLH 348 (394)
T ss_pred CEEEeecC--CCccCcEE--ECC--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEE
Confidence 87655432 11112222 233 588888999999999999988765432111 12222222 45788899999999
Q ss_pred EEeCCCcceeeeeecCCccEEE-EEEecCCCEEEEEecCCeEEE
Q 002496 255 IWHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~dg~v~i 297 (915)
++|..+|+.+.........+.+ ..+ .+..|++++.+|.++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 9999999988877654333332 222 2457888899988765
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.3e-09 Score=116.50 Aligned_cols=220 Identities=17% Similarity=0.212 Sum_probs=163.5
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC--eEEE
Q 002496 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg--~i~i 125 (915)
+..++|..|....+|++|+.+.+.|++|+..|.|++|++.+|.......+|...|+-+.-+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44566777888999999999999999999999999999999999999999999999999999999888765543 4678
Q ss_pred EECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe----cCCCCeeEEEEEeCCCcCE
Q 002496 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD----AHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~ 201 (915)
|++.+.....+.+.. -.++.|+. ....-+.|+......+||+.++.+..++- +....-++..|+|..+ +
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~--L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT--L 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc--e
Confidence 998764344444432 34678876 34444556666778999999988776632 1223347888999876 3
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEec
Q 002496 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (915)
++ .|| .+||.+..+.++.|......+ .-.|+|.|.-++..++ |||++|.++++.+..-. -..+.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence 43 344 589999888888777555333 3369999998888664 79999999887665332 24567777
Q ss_pred CCCEEE
Q 002496 282 SSRRIV 287 (915)
Q Consensus 282 ~~~~l~ 287 (915)
.|..+.
T Consensus 1312 tG~VmY 1317 (1516)
T KOG1832|consen 1312 TGDVMY 1317 (1516)
T ss_pred Cccchh
Confidence 666544
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=5.6e-06 Score=83.07 Aligned_cols=231 Identities=12% Similarity=0.126 Sum_probs=158.3
Q ss_pred CCEEEEEEcC-CCCeEEEEEcCCc-EEEEECCCCceeEEEEecCCCEE--EEEEeCCCCEEEEEe-----CCCeEEEEEC
Q 002496 16 ERVKSVDLHP-SEPWILASLYSGT-VCIWNYQSQTMAKSFEVTELPVR--SAKFVARKQWVVAGA-----DDMFIRVYNY 86 (915)
Q Consensus 16 ~~V~~v~~sp-~~~~la~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~--~l~~s~~~~~l~~~~-----~dg~i~vwd~ 86 (915)
.+...++.+| ....++.+-.-|+ ..+||..+++....+....+.-. .-.||+||++|++.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4566789999 4556667766655 78899999998887765444322 468999999999863 3689999999
Q ss_pred C-CCceeEEEecCCCCEEEEEEcCCCCEEEEEEc------------------CCeEEEEECCCCeeEEE-Ee--ecCCcc
Q 002496 87 N-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD------------------DMLIKLWDWEKGWMCTQ-IF--EGHSHY 144 (915)
Q Consensus 87 ~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~~--~~~~~~ 144 (915)
. +.+++..+..|.-....+.+.|||+.|+++-. +.++...|..++....+ .+ ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 77888889888777788999999988887631 33566667777743333 23 346778
Q ss_pred EEEEEEecCCCCEEEEEECCCc-------EEEEECCCCCCceEE-------ecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 145 VMQVTFNPKDTNTFASASLDRT-------IKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
|..+++.+ ++..++..-..|. |-+++. +.....+ ......+-+|+++.++.. +.+++-..+.
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~-ia~tsPrGg~ 240 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL-IAVTSPRGGR 240 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE-EEEECCCCCE
Confidence 99999998 6655554443332 333332 2222222 223467889999988872 3345556789
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEE
Q 002496 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~ 254 (915)
+.+||..+++.+.... -..+..++..+++ ++++.+ .|.+.
T Consensus 241 ~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred EEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC-CccEE
Confidence 9999999999887665 3346778887777 566555 44443
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=2.8e-05 Score=73.85 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=116.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002496 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 190 (915)
..+++.|+..+.+.-.|..++...-....+ .+|.+-+.- -+++++.|+..|.+++.+.+++.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 356778888888888888887433332222 333333333 2678999999999999999999887776543322222
Q ss_pred EEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcc--eeeeee
Q 002496 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENTLN 268 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~ 268 (915)
....+++. ++..|+.|+..+..|.++..++...+-..+...+-++.|....|..+...|.|.--..+++. .+....
T Consensus 99 a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 99 AQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred eEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 33444555 89999999999999999999988876555545556667733345555556666555544442 222111
Q ss_pred cCCccEEE--EEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEE
Q 002496 269 YGLERVWA--IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (915)
Q Consensus 269 ~~~~~v~~--i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~ 317 (915)
.. +++.+ ++. ++.+..++-||.+.- +++.|..+|.
T Consensus 177 ~~-~PiF~splcv---~~sv~i~~VdG~l~~----------f~~sG~qvwr 213 (354)
T KOG4649|consen 177 RF-GPIFASPLCV---GSSVIITTVDGVLTS----------FDESGRQVWR 213 (354)
T ss_pred cC-CccccCceec---cceEEEEEeccEEEE----------EcCCCcEEEe
Confidence 11 22221 121 345667777777765 5566666664
No 312
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.80 E-value=5e-06 Score=90.37 Aligned_cols=92 Identities=23% Similarity=0.249 Sum_probs=58.2
Q ss_pred HhCCChhhhhhcccCccce------eeeecccCCHHHHHHHHHHcC-------------ChhHHHHHHHHHHHcCChhhH
Q 002496 627 ESRGMIEEAIEVATDPDYR------FELAIQLGRLEVAQEIATEVQ-------------SESKWKQLGELAMSTGKLEMA 687 (915)
Q Consensus 627 ~~~~~~~~al~~~~~~~~~------f~~~l~l~~~~~A~~~a~~~~-------------~~~~w~~la~~al~~~~~~~A 687 (915)
.+.|..+.|++++...+.. .+.||..|+++.|.+...+.. +...-+.||+.|...|++..|
T Consensus 329 l~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHH
Confidence 5567777777777665532 367777788887777776544 466778899999999999999
Q ss_pred HHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 002496 688 EGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLF 734 (915)
Q Consensus 688 ~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~ 734 (915)
-.|+.-+||++.. .++....|+..+|..++.
T Consensus 409 f~~~~~lgd~~~c----------------v~lL~~~~~~~~A~~~A~ 439 (443)
T PF04053_consen 409 FQAALLLGDVEEC----------------VDLLIETGRLPEAALFAR 439 (443)
T ss_dssp HHHHHHHT-HHHH----------------HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHH----------------HHHHHHcCCchHHHHHHH
Confidence 6555555555444 445555555555555543
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=5.1e-08 Score=97.90 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=114.3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEEecCCCCEEEEEEcCCCCEEEEE---EcCCeEEEEECCCC
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSS---SDDMLIKLWDWEKG 131 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~---~~dg~i~iwd~~~~ 131 (915)
....+..++.++++|++..+....++++..... ..... -...-+.+.|-.+...+.++ ++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556788899999998888877777654332 22221 12223344444444444444 44456666666543
Q ss_pred eeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
......+|-+.+..++|+| |+.+++++..|..|++-.......+..+ .+|..-|..++..++. .|++++.|++
T Consensus 143 --~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~t 216 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKT 216 (390)
T ss_pred --CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCc
Confidence 3445568999999999999 8899999999999999887665555444 4699999999987654 5899999999
Q ss_pred EEEEECCCCcEEEEec
Q 002496 211 AKVWDYQTKSCVQTLE 226 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~ 226 (915)
|++||+.+|+++.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999887664
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=1.1e-07 Score=89.69 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=121.7
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECCCCce------------eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTM------------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
|+.+.++.+- .|+++..++.+..+...++.+ .+.+.-|..+-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666544 466766666666555433322 223333333333333344567799999999999998
Q ss_pred CCCCcee-EEEe-cCCCCEEEEEEcCCCCEEEEEE-----cCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE
Q 002496 86 YNTMDKV-KVFE-AHTDYIRCVAVHPTLPYVLSSS-----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 86 ~~~~~~~-~~~~-~~~~~i~~l~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+.-..+ ..+. .|.+ -.+.+....+..+.++. .-+..+.|+++........... ...|.+++-+|...+++
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEE
Confidence 7641111 1111 1111 11222223344444332 1235667776644222222222 23388999999778888
Q ss_pred EEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC
Q 002496 159 ASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++|+.||.+.+||.++.. +...+..|+.+++.+.|+|.... .|++++.||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 999999999999998864 34456789999999999998655 699999999999999764
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-07 Score=96.46 Aligned_cols=250 Identities=13% Similarity=0.169 Sum_probs=177.1
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC---CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTM 89 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~vwd~~~~ 89 (915)
|.+.|+.+.-+. -+++.+++.||.++.|.-.. -+.++.+..|-+.|.+++.+.++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 677777776554 46899999999999998433 1445566778899999999999999999887 999999998876
Q ss_pred ceeEEEec--CCCCEEEEEEcCCCC--EEEEE-EcCCeEEEEECCCCe-eEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 90 DKVKVFEA--HTDYIRCVAVHPTLP--YVLSS-SDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 ~~~~~~~~--~~~~i~~l~~s~~~~--~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
..+..++. -++.+. ...++... .|+++ -.+|.+.++|-.... .....-.-|..+|.++.++| .+..+++...
T Consensus 87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence 55543331 122222 11222211 34433 457899999977653 33344456899999999999 8889999999
Q ss_pred CCcEEEEECCC------CCCc---------eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-
Q 002496 164 DRTIKIWNLGS------PDPN---------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG- 227 (915)
Q Consensus 164 dg~i~v~d~~~------~~~~---------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 227 (915)
.|.|..|.... .+.. ..+...+....++.++|++. .+.+-+.|..|+++++.+|+.++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--cccccCcccEEEEEEeccchhhhhhhcc
Confidence 99999998763 1111 11223345678999999998 588888999999999998876554321
Q ss_pred -------------------------------Cc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec
Q 002496 228 -------------------------------HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 228 -------------------------------~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
|. ..-+.+.|...|++|+-|+-=| |++.++.++.+.+.+..
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 11 1235677888888888887665 88888888887776643
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=3.5e-07 Score=100.79 Aligned_cols=182 Identities=12% Similarity=0.132 Sum_probs=140.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEE
Q 002496 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 68 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (915)
++..++.|+-...+..+|+++.+..+...-..+.|.-|.. +++++.+|...|+|.+-|.++. ...+.+..|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceee
Confidence 3456777777778889999988877776654545655554 5788999999999999999987 788899999999988
Q ss_pred EEEecCCCCEEEEEEC---------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-
Q 002496 148 VTFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ- 217 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 217 (915)
+.. .+++|++++. |.-|+|||++..+.+..+.-+.++ .-+.|.|.-.. .+++++..|...+-|..
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEecccceeeccccc
Confidence 776 4788888875 456899999987766555544433 66788887554 68888999999999943
Q ss_pred --CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEe
Q 002496 218 --TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 218 --~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd 257 (915)
+. ..+..+......+.+++++++|+.++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 12344444555699999999999999999999999997
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=2.5e-05 Score=78.46 Aligned_cols=223 Identities=14% Similarity=0.123 Sum_probs=149.8
Q ss_pred CEEEEEEeCC-CCEEEEEeCCC-eEEEEECCCCceeEEEecCCCCEE--EEEEcCCCCEEEEEEc-----CCeEEEEECC
Q 002496 59 PVRSAKFVAR-KQWVVAGADDM-FIRVYNYNTMDKVKVFEAHTDYIR--CVAVHPTLPYVLSSSD-----DMLIKLWDWE 129 (915)
Q Consensus 59 ~v~~l~~s~~-~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~~~~~-----dg~i~iwd~~ 129 (915)
....++.+|. ...++.+-.-| ...+||..+++....+....+.-. .-.||+||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456788884 45555665544 678999999998888765444332 4689999999998643 5899999999
Q ss_pred CCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC------------------CCcEEEEECCCCCCceE--E--ecCCCC
Q 002496 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL------------------DRTIKIWNLGSPDPNFT--L--DAHQKG 187 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~------------------dg~i~v~d~~~~~~~~~--~--~~~~~~ 187 (915)
.+......+..|.-....+.+.| ++..|+++.. +.++.+.|..+++.+.+ + ..|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66566667776665566788899 7767776532 33455666677776655 3 236678
Q ss_pred eeEEEEEeCCCcCEEEEEeC-CC-------eEEEEECCCCcEEEEec-------CCccCeEEEEEeCCCCEEEEEE-cCC
Q 002496 188 VNCVDYFTGGDKPYLITGSD-DH-------TAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHPELPIIITGS-EDG 251 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~l~~~~-~dg 251 (915)
+..+++.++|. ++.+.. .| .|.+++. +..+..+. ...+.+-+|++++++..+++.+ ..|
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 88899888875 444432 22 2444443 23232222 2346789999999998776655 567
Q ss_pred cEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
.+.+||..+++.+...... .+..++..+++ ++++.+
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC
Confidence 8999999999988766544 45666666666 444433
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.68 E-value=1.9e-05 Score=80.54 Aligned_cols=211 Identities=11% Similarity=0.018 Sum_probs=133.7
Q ss_pred CCCeEEEEECCCCceeEEEecC--CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCC
Q 002496 77 DDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
.+|.|..||..+|+.+...... .....+. ..+++.++++++.++.|..||..++...-..-.... +...... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~--~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVV--D 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeee--c
Confidence 3689999999999999887641 1222221 233566888889999999999998844333222111 1111122 3
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEE-ecCC---CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCcc
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ---KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 230 (915)
++.+++++.++.|..+|..+++..... .... ...........++ .++++..++.|..+|.++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 566777778899999999999988874 3221 1112222333344 688888899999999999999888765432
Q ss_pred C----------eEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 231 N----------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 231 ~----------i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
. +..-....++ .++.++.+|.+..+|..+++.+.... ...+.. .....+..|++++.++.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 2 1222233344 77777777764444999999765333 222222 245677888888888888774
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=4.9e-06 Score=89.95 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=132.6
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 92 (915)
|..+|.--+++..+++++.|+..|.+++|+-..+...+. ..+..+.+..+..+++..++|.|+..|.|.++-++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 667788888888999999999999999999666654432 2235566777788999999999999999999987764332
Q ss_pred EE-----E-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---eeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 93 KV-----F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 93 ~~-----~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.. . ..|...|++++|++++..+++|...|.|..-.+++. ....+.+....+.|..+.+. ++.+|+ ++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLV-Stl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLV-STL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehH-hhh
Confidence 11 1 247889999999999999999999999999888761 11223333456778888776 343443 333
Q ss_pred CCcEEEEECCCCCCceEEe-cCCC-CeeEEEEEeC---CCcCEEEEEeCCCeEEEEECCC-CcEEEE
Q 002496 164 DRTIKIWNLGSPDPNFTLD-AHQK-GVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~-~~~~-~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-~~~~~~ 224 (915)
-.. .+++....+..+.=+ ..++ .-...+|.|. ++.+.|+++--. .++|..+- |..+++
T Consensus 189 ~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 189 TRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKT 252 (726)
T ss_pred hhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEe
Confidence 333 345544333111111 1111 1245566665 344456655444 45564432 554444
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.64 E-value=6.8e-07 Score=98.64 Aligned_cols=182 Identities=14% Similarity=0.210 Sum_probs=141.0
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+..++.|+....+..+|+.+.+..+......+.|.-++ .+++.+.+|...|+|.+-|.++.+.++++.+|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 44577777777888999999988887776666666555 4778999999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEEc---------CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEE---CCC
Q 002496 107 VHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN---LGS 174 (915)
Q Consensus 107 ~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d---~~~ 174 (915)
. .|+.|++|+. |..|++||++.-+. ...+.-+.++ .-+.|.|.-...+++++..|...+-| +.+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 6 4788998875 45689999987632 2222223332 45778887788999999999999999 444
Q ss_pred CC-CceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 175 PD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 175 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.. .++.+......+..++++++++ .++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeecC
Confidence 32 2333444556689999999888 7999999999999973
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.2e-06 Score=95.72 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=130.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 94 (915)
.+.++|++++ +++|+.|+.+|.|++++.. +.. ++...|... ..+|.++++|+.||.|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3457777777 6789999999999999964 433 333334433 66899999999999999999988887777
Q ss_pred EecCCCCEEEEEEcCC-----CCEEEEEEcCCeEEEEECC--CCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 95 FEAHTDYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.- ..++.+++++|+ .+.+++|+..| +.++.-+ +. .....+....++|.++.|. +++++-++.+| |
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v 181 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-V 181 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEec---CcEEEEecCCC-c
Confidence 663 458999999997 45789999988 7776532 22 1222455667899999995 78888877655 8
Q ss_pred EEEECCCCCCceEEecCCCC------eeEEEEEeCCCcCEEEEEeCCCeEEEEECC
Q 002496 168 KIWNLGSPDPNFTLDAHQKG------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~v~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
++||+.+.+.+..+...... ...+.|.+... ++.|- ..+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~---LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR---LVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe---EEEec-CCeEEEEEEe
Confidence 99999887766555432222 34577776553 65554 4478888776
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=6.9e-06 Score=90.68 Aligned_cols=201 Identities=13% Similarity=0.245 Sum_probs=137.9
Q ss_pred EEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC-----
Q 002496 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDM-----FIRVYNYNTM----- 89 (915)
Q Consensus 21 v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~~~dg-----~i~vwd~~~~----- 89 (915)
-+|++.+..++.|+.+|.|.+++ ++.+.+..+..++.. |..+....+..+|++.+.|+ .|+||+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 35688889999999999999998 666777888888777 44444444446777766654 5999998632
Q ss_pred -cee---EEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCe-eEEEEeecCCccEEEEEEecCCCCEE
Q 002496 90 -DKV---KVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGW-MCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 -~~~---~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.++ ..+. ..+.++.+++.|.+-+.+++|-.+|.|..+.-+ ..+ ...........+|+.+.+.. ++..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence 222 1121 235678999999999999999999999998532 111 22223334567899999987 55553
Q ss_pred EEEECCCcEEEEECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEec
Q 002496 159 ASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 159 ~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+.......|.+|.+.+..+. ..+..+..+++|..+++.... +++++ +..+.+|+.....+...+.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q--fIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ--FICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc--EEEec-CceEEEEcCCCcceeeeec
Confidence 33334568999999755533 346778888999988876542 44444 3479999987555555554
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.58 E-value=4.3e-05 Score=82.52 Aligned_cols=263 Identities=13% Similarity=0.170 Sum_probs=152.5
Q ss_pred cCCCCeEEEEE---------cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002496 24 HPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 24 sp~~~~la~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 94 (915)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|++++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68999888743 246799999999866544333 56788999999999999885 57899999877744332
Q ss_pred Ee-c-------C---------CCCEEEEEEcCCCCEEEEEEcC-C-----------------------------------
Q 002496 95 FE-A-------H---------TDYIRCVAVHPTLPYVLSSSDD-M----------------------------------- 121 (915)
Q Consensus 95 ~~-~-------~---------~~~i~~l~~s~~~~~l~~~~~d-g----------------------------------- 121 (915)
-. + - -+.-..+-||||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 21 1 0 1123568899999998865322 1
Q ss_pred eEEEEECCCCeeEE-EEe---ecCCccEEEEEEecCCCCEEEEEEC--CC---cEEEEECCCCCCceEEec-CCC---Ce
Q 002496 122 LIKLWDWEKGWMCT-QIF---EGHSHYVMQVTFNPKDTNTFASASL--DR---TIKIWNLGSPDPNFTLDA-HQK---GV 188 (915)
Q Consensus 122 ~i~iwd~~~~~~~~-~~~---~~~~~~i~~~~~~p~~~~~l~~~~~--dg---~i~v~d~~~~~~~~~~~~-~~~---~v 188 (915)
.+.++|+.++.... ... ......+..+.|.+ ++..|+..-. +. .+.++|..++........ ... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 23344555442211 111 23456788999998 6663444333 22 366778877665433322 111 22
Q ss_pred eEEEEE-eCCCcCEEEEEeCCCe--EEEEECCCCcEEEEecCCccCeEE-EEEeCCCCEEE-EEEcC----CcEEEEeCC
Q 002496 189 NCVDYF-TGGDKPYLITGSDDHT--AKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIII-TGSED----GTVRIWHAT 259 (915)
Q Consensus 189 ~~~~~~-~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~-i~~~~~~~~l~-~~~~d----g~v~iwd~~ 259 (915)
....+. +++.. ++.....+|. |.+++...+. ...+....-.|.. +.++++++.|. ++..+ ..|...++.
T Consensus 238 ~~~~~~~~~~~~-~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNE-FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSE-EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCE-EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 345554 55554 5656656665 5555655444 4455555556744 67888877655 44332 245555666
Q ss_pred CcceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002496 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 260 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (915)
.+.....+......-..+.|||++++++..+.
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 23344444444333379999999999887654
No 324
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=5.1e-05 Score=73.78 Aligned_cols=222 Identities=11% Similarity=0.128 Sum_probs=126.2
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCC--ceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002496 63 AKFVARKQWVVAGADDMFIRVYNYNTM--DKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 63 l~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
++.+.+|+.||+-. |..|.|-..+.. ..+.... .....-+.++||||+..|+.+...|+|+++|+.+. .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 45677888777764 456666554431 1122222 22334678999999999999999999999999864 33322
Q ss_pred eecC------CccEEEEEEecCC-----CCEEEEEECCCcEEEEECCCC-----CCceE--Eec-CCCCeeEEEEEeCCC
Q 002496 138 FEGH------SHYVMQVTFNPKD-----TNTFASASLDRTIKIWNLGSP-----DPNFT--LDA-HQKGVNCVDYFTGGD 198 (915)
Q Consensus 138 ~~~~------~~~i~~~~~~p~~-----~~~l~~~~~dg~i~v~d~~~~-----~~~~~--~~~-~~~~v~~~~~~~~~~ 198 (915)
-..+ ...|..+.|.+.. ...|++-...|.++-|-+..+ +.... +.. ...+|.++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2222 3456667675421 235666667888877765322 22222 322 467899999998765
Q ss_pred cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE--EEEEcCC------cEEEEeCCCcceeeeeecC
Q 002496 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII--ITGSEDG------TVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l--~~~~~dg------~v~iwd~~~~~~~~~~~~~ 270 (915)
+|++|+.... +.+. -......+++-..-.+.++. ++...|+ +..+|.+-+.+........
T Consensus 161 --LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 --LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred --EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 6666654322 0000 00111122222222222211 1111111 1223333333322222334
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 271 LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
...|..++.||||+.||+...+|.+.+|
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 5789999999999999999999999998
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=3e-07 Score=90.19 Aligned_cols=161 Identities=11% Similarity=0.129 Sum_probs=117.6
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----eeEEEE
Q 002496 64 KFVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----WMCTQI 137 (915)
Q Consensus 64 ~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~ 137 (915)
+|+-+ |-. ++.+.+..|-+-|+.||-. ..|. ..+.|.++.|...+++++.|..+|.|..+|++.. ..+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56532 333 3444556788888887643 3333 4667899999999999999999999999999854 223333
Q ss_pred eecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002496 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
+ -|.+.|+++..-..++..|++.+.+|+|++||++.-+. +.+..+|-..-.-+-+.-+.....++++++|...+||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 3 37788888876544678899999999999999987666 6677776554444434434444489999999999999
Q ss_pred ECCCCcEEEEecCC
Q 002496 215 DYQTKSCVQTLEGH 228 (915)
Q Consensus 215 d~~~~~~~~~~~~~ 228 (915)
.++.|..+.++...
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999998887643
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.4e-07 Score=90.87 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=117.4
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC-----CCceEEecCCCCee
Q 002496 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-----DPNFTLDAHQKGVN 189 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~ 189 (915)
++.+.+..|.+-|++++ ..+.+. ..+.|.++.|.. .++++..|+.+|.|..+|++.. .+... -.|...|+
T Consensus 228 fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecc--cccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence 45556677889999987 344444 567788899986 7899999999999999999765 23333 34888999
Q ss_pred EEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE---EEEecCCccCeEE--EEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002496 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSA--VCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~--i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
++......+. +|++.+.+|+|++||.+.-++ +.+..+|...-.- +-..+....+++++.|...|||.+..|.++
T Consensus 303 slq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9887763333 799999999999999997666 8888888654333 334566678999999999999999999999
Q ss_pred eeeecCC
Q 002496 265 NTLNYGL 271 (915)
Q Consensus 265 ~~~~~~~ 271 (915)
.++..+.
T Consensus 382 ~tipf~~ 388 (425)
T KOG2695|consen 382 CTIPFPY 388 (425)
T ss_pred eccCCCC
Confidence 8887654
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.50 E-value=0.0001 Score=83.10 Aligned_cols=262 Identities=12% Similarity=0.135 Sum_probs=155.8
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCC------CEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL------PVR--SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+..+.+++.++.|.-.|..+|+.+..+..... .+. .+.. .++..++.++.++.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34567777789999999999988877654332 110 0111 12367888899999999999999998887643
Q ss_pred CCC-----E-EEEEEcCCCCEEEEEE---------cCCeEEEEECCCCeeEEEEeecCCc-------------------c
Q 002496 99 TDY-----I-RCVAVHPTLPYVLSSS---------DDMLIKLWDWEKGWMCTQIFEGHSH-------------------Y 144 (915)
Q Consensus 99 ~~~-----i-~~l~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~ 144 (915)
... + .+..+. +..++.++ .+|.+..+|..+++..-+.-..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 1 111222 24555554 3678999999988433322111110 0
Q ss_pred E-EEEEEecCCCCEEEEEECCC------------------cEEEEECCCCCCceEEecCCCCe------eEEEEEe----
Q 002496 145 V-MQVTFNPKDTNTFASASLDR------------------TIKIWNLGSPDPNFTLDAHQKGV------NCVDYFT---- 195 (915)
Q Consensus 145 i-~~~~~~p~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~~~~~v------~~~~~~~---- 195 (915)
+ .+..+.+ .+..++.++.++ .|.-+|..+++.....+...... ....+.+
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1233343 456777777665 79999999999887765321111 1111111
Q ss_pred CCC-cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE------------------EcCCcEEEE
Q 002496 196 GGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG------------------SEDGTVRIW 256 (915)
Q Consensus 196 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~------------------~~dg~v~iw 256 (915)
++. ..++++++.+|.+..+|.++|+.+....... ..++.+| ..++.+ ..+|.|.-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 121 1257888889999999999999988765221 1233444 233332 236789999
Q ss_pred eCCCcceeeeeecCCc--------cEEEEEEecCCCEEEEEecCCeEEE
Q 002496 257 HATTYRLENTLNYGLE--------RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
|..+|+.+........ +...-.....+..|++++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 9999998877765411 1111111124567777777777665
No 328
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00081 Score=70.03 Aligned_cols=245 Identities=10% Similarity=0.071 Sum_probs=120.1
Q ss_pred ECCCCceeEEEEecCCCEEEE-----EEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002496 43 NYQSQTMAKSFEVTELPVRSA-----KFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~l-----~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
|..||..+..+.........+ +|.++|+.|+.++. ...+.+.|+.+++..+.-.+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 667787777776544433333 56789988777665 4478888999877655444322223356778888888
Q ss_pred EEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEec-CCCCEEEEEEC----------------------CCcEEEEE
Q 002496 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASL----------------------DRTIKIWN 171 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~~~~~----------------------dg~i~v~d 171 (915)
+-......|.-.|+++. +...++......+-...|.. .++..++-.-. ...|...|
T Consensus 96 ~Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTL-EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTTEEEEEETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCCeEEEEECCcC-cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76666678999999987 45566666666666677753 24444432211 13455667
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC---CC-eEEEEECCC-CcEEEEecCCcc--CeEEEEEeCCCCEE
Q 002496 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DH-TAKVWDYQT-KSCVQTLEGHTH--NVSAVCFHPELPII 244 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~--~i~~i~~~~~~~~l 244 (915)
+.+++....+. ...-+..+.|+|.... +|+-|-. +. .-+||-+++ +...+.+..+.. .+..=-|.|||..|
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 77776544444 4556678888887654 3444332 22 124554432 444444443322 23344589999866
Q ss_pred EEEEc-----CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecC
Q 002496 245 ITGSE-----DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 245 ~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (915)
.--+. +..|.-+|..+++....... .....+-.++||++++--+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 54322 33577778888765433222 245567777888877664433
No 329
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.5e-06 Score=82.05 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=146.2
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 002496 4 RLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~~dg~i 81 (915)
.|+...-+.+|..-|..++|||... ++..++.+..|.|.|+++...+..+..+ .++.+++|.-|. .+|..|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3444556778889999999999877 6778888999999999999999988877 789999998765 567777889999
Q ss_pred EEEECCCCce-eEEEec--CCCCEEEEE------EcCCCCEEEEEEcCCeEEEEECCCCee-EEEEee-cCCccEEEEEE
Q 002496 82 RVYNYNTMDK-VKVFEA--HTDYIRCVA------VHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFE-GHSHYVMQVTF 150 (915)
Q Consensus 82 ~vwd~~~~~~-~~~~~~--~~~~i~~l~------~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~i~~~~~ 150 (915)
.|||+...+- +..+.+ ...+|..++ ..+.|.+++..+.+ +..|.+..... ...+++ ...+...++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999875332 111111 122333333 23344445544443 56676543211 111111 22455666666
Q ss_pred ecCCCCEEEEEECCC------cEEE-EECCCCCCceEEe-cCCC----Ce--eEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 151 NPKDTNTFASASLDR------TIKI-WNLGSPDPNFTLD-AHQK----GV--NCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg------~i~v-~d~~~~~~~~~~~-~~~~----~v--~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.+..+..+++.-.+. .|-. -|-..|.++...+ .+.+ ++ ....+.+..+..++.++...+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 663333333332211 1111 1222232222111 1100 00 0111112222223445566789999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeC-CC-CEEEEEEcCCcEEEEeCC
Q 002496 217 QTKSCVQTLEGHTHNVSAVCFHP-EL-PIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~~~~-~~-~~l~~~~~dg~v~iwd~~ 259 (915)
.+.+.++++.. ..+|..++... ++ .+|++-. |..++||..+
T Consensus 419 ~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred chhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998874 47787777554 33 3555554 5588888644
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.39 E-value=0.00021 Score=80.64 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=145.3
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCCC-----EE-EEEEeCCCCEEEEEe---------CCCeEEEEECCCCcee
Q 002496 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VR-SAKFVARKQWVVAGA---------DDMFIRVYNYNTMDKV 92 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~l~~s~~~~~l~~~~---------~dg~i~vwd~~~~~~~ 92 (915)
..+++++.+|.|.-+|.++|+.+..+...... +. +..+. +..+++++ .+|.+..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56778888999999999999998777643221 11 11121 24555554 3678999999999988
Q ss_pred EEEecCCCC--------------------E-EEEEEcCCCCEEEEEEcCC------------------eEEEEECCCCee
Q 002496 93 KVFEAHTDY--------------------I-RCVAVHPTLPYVLSSSDDM------------------LIKLWDWEKGWM 133 (915)
Q Consensus 93 ~~~~~~~~~--------------------i-~~l~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 133 (915)
..+...... + ...++.+.+..+++++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 877542110 1 1234445566788887665 789999998844
Q ss_pred EEEEe-ecCCc----cEEEEEEe---cCCC---CEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002496 134 CTQIF-EGHSH----YVMQVTFN---PKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 134 ~~~~~-~~~~~----~i~~~~~~---p~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.-+.- ..|.. ......+. +.++ ..+++++.+|.+...|..+++.+....... ..+...| + .+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~--~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G--LV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c--eE
Confidence 33321 11211 00001111 0122 257788889999999999999887654221 1122222 1 22
Q ss_pred EEE------------------eCCCeEEEEECCCCcEEEEecCCc--------cCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002496 203 ITG------------------SDDHTAKVWDYQTKSCVQTLEGHT--------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 203 ~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
..+ ..+|.+.-.|..+|+.+.+..... .+...-.....+..|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 222 246789999999999888776431 111111111245688889999999999
Q ss_pred eCCCcceeeeeecC
Q 002496 257 HATTYRLENTLNYG 270 (915)
Q Consensus 257 d~~~~~~~~~~~~~ 270 (915)
|..+|+.+...+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 99999999888765
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1.4e-06 Score=59.37 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=36.7
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
++++.++.+|.++|++++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.4e-06 Score=83.50 Aligned_cols=209 Identities=16% Similarity=0.120 Sum_probs=144.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCC
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT---MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKG 131 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~ 131 (915)
|...|+.+. ..-.+++.+++-||.++.|--.. -+.++.+..|...|.+++.+-++-.+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 555555543 33567899999999999997442 1334556688999999999999988888777 999999998865
Q ss_pred eeEEE-EeecCCccEEEEEEecCCC-CEEEE-EECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 132 WMCTQ-IFEGHSHYVMQVTFNPKDT-NTFAS-ASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 132 ~~~~~-~~~~~~~~i~~~~~~p~~~-~~l~~-~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
..... .+..-.+. .++..+|.+. ..+++ .-.+|.+.++|-.... ....-.-|..+|.++.+.+.++ .+++..
T Consensus 87 DminmiKL~~lPg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSID 163 (558)
T ss_pred chhhhcccccCCCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeecc
Confidence 22211 11111121 1222233111 13333 3347889999976543 2233356889999999999998 588888
Q ss_pred CCCeEEEEECCC------CcEE---------EEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeee
Q 002496 207 DDHTAKVWDYQT------KSCV---------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 207 ~dg~i~iwd~~~------~~~~---------~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
..|.|.-|.... .... ..+.......+++.|+|+|..+.+-+.|..|++++..+|++++.+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 899999998762 1111 1122234567899999999999999999999999999998766543
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00065 Score=69.36 Aligned_cols=246 Identities=13% Similarity=0.149 Sum_probs=151.7
Q ss_pred EEEEEcCCCCeEEEEEc----------CCcEEEEECCCCceeEEEEecCC-C------EEEEEEeCCCCEEEEEeC--CC
Q 002496 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-P------VRSAKFVARKQWVVAGAD--DM 79 (915)
Q Consensus 19 ~~v~~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-~------v~~l~~s~~~~~l~~~~~--dg 79 (915)
-.+..||+++.++++.. ...|.+||..+-.....+....+ . ...++++.|++++++..- -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999998887542 33599999999988877765543 2 234678889998887643 56
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE----eecCCccEE-EEEEecCC
Q 002496 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI----FEGHSHYVM-QVTFNPKD 154 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~-~~~~~p~~ 154 (915)
.|.|.|+..++.+..+.... . ..+-=++ ...+.+-+.||.+.-..+....+..+. +.....++. .-.+.. .
T Consensus 119 SVtVVDl~~~kvv~ei~~PG-C-~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPG-C-WLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTS-E-EEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred eEEEEECCCCceeeeecCCC-E-EEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence 89999999988888876432 1 2221122 245778888999998888732222221 222222222 333444 4
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceE--Eec----------CCCCeeEEEEEeCCCcCEEEEEe--CC-------CeEEE
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFT--LDA----------HQKGVNCVDYFTGGDKPYLITGS--DD-------HTAKV 213 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~----------~~~~v~~~~~~~~~~~~~l~~~~--~d-------g~i~i 213 (915)
+..++.-+.+|.|+-.|+........ +.. ..++-.-+++++..+. +++.-. .+ ..|.+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r-lyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR-LYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE-EEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe-EEEEecCCCCCCccCCceEEEE
Confidence 55666678899999999876653221 110 1233445666665553 222211 11 24888
Q ss_pred EECCCCcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCcEEEEeCCCcceeeeeecC
Q 002496 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 214 wd~~~~~~~~~~~~~~~~i~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
+|+.+++.+..+.. ..++.+|..+.+.+ +|++.+ .++.+.+||..+|+.+..+..-
T Consensus 274 ~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 274 YDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 89999999988873 34677999998775 665544 5789999999999998877643
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.7e-05 Score=77.60 Aligned_cols=249 Identities=11% Similarity=0.039 Sum_probs=147.8
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEE
Q 002496 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~ 116 (915)
|++.+..+.+....+..+...|+.++|||... ++..++.+..|.|.|+.+...+..+..+ ..+++++|.-+. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555555666778899999999877 6788899999999999999888888887 789999998765 46778
Q ss_pred EEcCCeEEEEECCCCeeEEEEeec--CCccEEEEEEecC-----CCCEEEEEECCCcEEEEECCC--CCCceEEe-cCCC
Q 002496 117 SSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPK-----DTNTFASASLDRTIKIWNLGS--PDPNFTLD-AHQK 186 (915)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~-----~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~-~~~~ 186 (915)
|...|.|.+||++........+.+ ...+|..++.-+. .+.+++..+.+ +..|.+.. +.....+. ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 888999999999976444433332 2344544443320 23344444332 44565532 22222222 2244
Q ss_pred CeeEEEEEeCCCcCEEEEEeCCC------eEE-EEECCCCcEEEEec-CC-cc---Ce---EEEEEeCCCCEEE-EEEcC
Q 002496 187 GVNCVDYFTGGDKPYLITGSDDH------TAK-VWDYQTKSCVQTLE-GH-TH---NV---SAVCFHPELPIII-TGSED 250 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg------~i~-iwd~~~~~~~~~~~-~~-~~---~i---~~i~~~~~~~~l~-~~~~d 250 (915)
...++++.+..+. ++++.-.+. .+- -.|..+|.++...+ ++ .+ ++ ..+.-.++.++|+ +|...
T Consensus 332 ~cismqy~~~snh-~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNH-LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccce-EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4555556554443 344333221 011 12333444433222 11 01 11 1122234445444 45556
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecC--CCEEEEEecC
Q 002496 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKS--SRRIVIGYDE 292 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d 292 (915)
+.+.+||..++..++++... .+|..++.... +.+|++-+++
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~ 453 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDD 453 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecc
Confidence 78999999999999988877 77777775443 3455554443
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.32 E-value=1.9e-06 Score=58.73 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.7
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367888999999999999999999999999999999997
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.0011 Score=69.03 Aligned_cols=272 Identities=11% Similarity=0.113 Sum_probs=136.2
Q ss_pred EEcCCCCeEEEEEc---CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002496 22 DLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 22 ~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+|.+||+.|+.++. ...+.+.|+.+++..+--.+.........++|+++.++-......|+-.|+.|++....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57889987777665 456888899999776644432222334667899888877666678999999998887777777
Q ss_pred CCCEEEEEEc--CCCCEEEEEEc----------------------CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCC
Q 002496 99 TDYIRCVAVH--PTLPYVLSSSD----------------------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 99 ~~~i~~l~~s--~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
.+.+-...|. .++..++..-. ...|.-.|+.++ ....++. ....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEE-ESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEe-cCccccCcccCCCC
Confidence 7766666664 45555443211 234666677777 4444443 44667889999988
Q ss_pred CCEEEEEECC---C-cEEEEECCC-CCCceEEecCC--CCeeEEEEEeCCCcCEEEEEeC---CCeEEEEECCCCcEEEE
Q 002496 155 TNTFASASLD---R-TIKIWNLGS-PDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 155 ~~~l~~~~~d---g-~i~v~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 224 (915)
+.+|+.|... . .-+||-+++ +.....+..+. ..+..=-|.|+|...+...... +..|.-+|..+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 8888887652 2 124554433 22222222222 2223334778877422222222 34577788888765433
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcCC----------------cEEEEeCCCcceeeeee---------cCCc-cEEEEE
Q 002496 225 LEGHTHNVSAVCFHPELPIIITGSEDG----------------TVRIWHATTYRLENTLN---------YGLE-RVWAIG 278 (915)
Q Consensus 225 ~~~~~~~i~~i~~~~~~~~l~~~~~dg----------------~v~iwd~~~~~~~~~~~---------~~~~-~v~~i~ 278 (915)
.. ......+-.++||++++-=+.|. -|+++++..++...... .+.. .=....
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 22 12345666788988776544432 35667776655321111 1100 124578
Q ss_pred EecCCCEEEEEec-CCeEEE
Q 002496 279 YMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 279 ~~~~~~~l~~~~~-dg~v~i 297 (915)
|+|||+.|+..++ .|...+
T Consensus 358 FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EE
T ss_pred cCCCCCEEEEECCCCCCccE
Confidence 9999988776554 344443
No 337
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.0027 Score=69.96 Aligned_cols=84 Identities=13% Similarity=-0.014 Sum_probs=63.6
Q ss_pred HcCCcchhHHHHHhcCCHHHHH--HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHH
Q 002496 693 QAMDLSGLLLLYSSLGDAEGIS--KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEI 770 (915)
Q Consensus 693 ~~~d~~~l~~l~~~~g~~~~~~--~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~ 770 (915)
+-.-|+.++.+|+--|...++. --+.-...+++++.|..+|...|++.||..+|..+++|.++..++..-.+..+...
T Consensus 903 ~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~ 982 (1243)
T COG5290 903 RHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLC 982 (1243)
T ss_pred hccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHH
Confidence 4456678888888877655433 34556677888999999999999999999999999999999988777667665554
Q ss_pred HHHHHH
Q 002496 771 VAIWRK 776 (915)
Q Consensus 771 ~~~w~~ 776 (915)
-+....
T Consensus 983 AE~L~S 988 (1243)
T COG5290 983 AELLPS 988 (1243)
T ss_pred HHhhhh
Confidence 333333
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=5.3e-05 Score=83.33 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=112.6
Q ss_pred cccCCCCEEEEEEcCC-------------CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC-----CCEE
Q 002496 11 LAQRSERVKSVDLHPS-------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-----KQWV 72 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~-------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l 72 (915)
|..|.+.|.-..+.-. |.++++++.||+|.|-.+-+.+...++. ...++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 4567777766665544 9999999999999999998888777766 5578999999998 5679
Q ss_pred EEEeCCCeEEEEECC--CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC-----ccE
Q 002496 73 VAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-----HYV 145 (915)
Q Consensus 73 ~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~i 145 (915)
++|+..| +.++.-+ ..+....+....++|.++.|. |++|+-++++| |++||..++..+..+-..+. ...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fp 208 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFP 208 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCC
Confidence 9999988 7777532 112222455667899999997 67899888887 89999998744444333331 123
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECC
Q 002496 146 MQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~v~d~~ 173 (915)
..+.|.+ .+.++.|= ..+|++..++
T Consensus 209 phl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred CceEecC--CCeEEEec-CCeEEEEEEe
Confidence 4677875 55666654 4578888876
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.22 E-value=0.00057 Score=73.60 Aligned_cols=266 Identities=10% Similarity=0.083 Sum_probs=135.9
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------- 88 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~-------- 88 (915)
.|+.|.|.++..-|++|..+|.|.||.+...+... .....+-..+.+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998889999999999999875543221 000011111111110 00011111222211
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE-eec------CCccEEEEEEec----CCC-
Q 002496 89 -MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEG------HSHYVMQVTFNP----KDT- 155 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~------~~~~i~~~~~~p----~~~- 155 (915)
..+...+....++|++++.|.-| ++++|..+|.+.|.|+++...+... +.. ....++++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12233445568899999998554 9999999999999999887443331 112 234678888863 222
Q ss_pred --CEEEEEECCCcEEEEECC-C--CCCce----EEecCCCCeeEEEEEe-CC------------------CcCEEEEEeC
Q 002496 156 --NTFASASLDRTIKIWNLG-S--PDPNF----TLDAHQKGVNCVDYFT-GG------------------DKPYLITGSD 207 (915)
Q Consensus 156 --~~l~~~~~dg~i~v~d~~-~--~~~~~----~~~~~~~~v~~~~~~~-~~------------------~~~~l~~~~~ 207 (915)
-.+++|+..|.+.+|.+. . +.... ....+..+|..+.... +. .-+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 468889999999999874 1 11111 1123556665555332 11 0112455556
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEe-----CCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC----ccEEEEE
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----PELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIG 278 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~ 278 (915)
+..++++...+.+.........-....+++- ..+..|++-..+|.|++|.+-.-+.+..+..+. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7789999988777655544222233344452 356678888899999999999888877766542 2234455
Q ss_pred EecCCCEEEEEec
Q 002496 279 YMKSSRRIVIGYD 291 (915)
Q Consensus 279 ~~~~~~~l~~~~~ 291 (915)
++++|..++..+.
T Consensus 314 is~~Gdi~~~~gp 326 (395)
T PF08596_consen 314 ISRNGDIFYWTGP 326 (395)
T ss_dssp E-TTS-EEEE-SS
T ss_pred ECCCCCEEEEeCc
Confidence 6666665544433
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.00068 Score=67.56 Aligned_cols=201 Identities=8% Similarity=0.117 Sum_probs=121.0
Q ss_pred hhcccCCCCEEEEEEcCCCC-eEEEEEcCCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002496 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~ 86 (915)
+.+.+-.+.+..++|+|+.. ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 44556666799999999866 5555666888888885 58888887754 356889999888877776656899999988
Q ss_pred CCCc------eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CeeEE-EEe------ecCCccE
Q 002496 87 NTMD------KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCT-QIF------EGHSHYV 145 (915)
Q Consensus 87 ~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~i 145 (915)
.... ....+. .++..+..++|+|.++.|+++-...-..+|.+.. ..... ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4321 112222 3455689999999988888888776667776654 11111 111 1123457
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCC---------CCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002496 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.++.++|..+++++.+..+..|..+| .++++...+.-.. ...-.|++.++|+ |.+.+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC---EEEEcCCceEEEe
Confidence 89999998888899999999999999 5666665554322 2456788888775 5566666666554
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.19 E-value=4.2e-07 Score=96.49 Aligned_cols=200 Identities=19% Similarity=0.254 Sum_probs=137.1
Q ss_pred CCCCEEEEEEcCC--CCeEEEEEcCCcEEEEECCCCce--eEEEEecCCCEEEEEEeC-CCCEEEEEeC----CCeEEEE
Q 002496 14 RSERVKSVDLHPS--EPWILASLYSGTVCIWNYQSQTM--AKSFEVTELPVRSAKFVA-RKQWVVAGAD----DMFIRVY 84 (915)
Q Consensus 14 h~~~V~~v~~sp~--~~~la~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~~s~-~~~~l~~~~~----dg~i~vw 84 (915)
....+.|++++-+ ...+++|..+|.|.+-..+...- .....++..++++++|++ |.++||+|-. |..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456888887664 45788999999999998765432 233456778999999998 5667777743 6789999
Q ss_pred ECCCC--cee--EEEec-CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 85 NYNTM--DKV--KVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 85 d~~~~--~~~--~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
|+.++ .+. ..|.+ ......+++|..+.+.+++|.....+.++|++.... +...-.+..+..+...|-.+++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--SVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh--hhhhhhhhhcccceecCCCCCcee
Confidence 99876 111 12222 334566899998999999999999999999985412 221223345666777776677887
Q ss_pred EEECCCcEEEEE-CCCCC-CceEEec----CCCCeeEEEEEeCCCcCEEEEEe-CCCeEEEEECC
Q 002496 160 SASLDRTIKIWN-LGSPD-PNFTLDA----HQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ 217 (915)
Q Consensus 160 ~~~~dg~i~v~d-~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 217 (915)
+.. ||.|.+|| ..+-+ +..++.. ....+..++|+|...+ ++++.. +.++|+++|+.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 766 99999999 33322 2222221 2235899999998876 455544 55889999875
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.16 E-value=0.0026 Score=69.70 Aligned_cols=211 Identities=11% Similarity=0.004 Sum_probs=121.0
Q ss_pred EEEEcCCCCeEEEEEcC-----------CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002496 20 SVDLHPSEPWILASLYS-----------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~ 88 (915)
.++.+|.|..+|+...+ ..|.||+ ..|+++.++.-..+.+.++.|+.+. .|++-..||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 45777877777776544 1599999 5777888777666899999998865 56667799999999986
Q ss_pred CceeEEE-------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee---c-----CCc-cEEE-EEEe
Q 002496 89 MDKVKVF-------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE---G-----HSH-YVMQ-VTFN 151 (915)
Q Consensus 89 ~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-----~~~-~i~~-~~~~ 151 (915)
|+....+ .-....+....+..+| ++.-..++.+.+.+--........+. . +.. .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 3331111 1111223333444455 33333455554443222111111110 0 000 0000 1233
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC-cc
Q 002496 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-TH 230 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 230 (915)
. +....+....++.+.+.+-...+. +. ..+++..++.||+++ +++.-..+|.+.+.+..-.+.+..+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3 334444444455555444322111 11 246899999999998 7888888999999987666666666543 34
Q ss_pred CeEEEEEeCCCC
Q 002496 231 NVSAVCFHPELP 242 (915)
Q Consensus 231 ~i~~i~~~~~~~ 242 (915)
....+.|+.+..
T Consensus 261 ~p~~~~WCG~da 272 (410)
T PF04841_consen 261 PPKQMAWCGNDA 272 (410)
T ss_pred CCcEEEEECCCc
Confidence 566788877643
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.13 E-value=0.00072 Score=74.72 Aligned_cols=216 Identities=12% Similarity=0.019 Sum_probs=135.1
Q ss_pred CCCeEEEEEc-CCcEEEEECCCCceeEEEEec-CCCEEEEE-------------------EeCCCCEEEEEe-CCCeEEE
Q 002496 26 SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAK-------------------FVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 26 ~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~-------------------~s~~~~~l~~~~-~dg~i~v 83 (915)
||+||.+-.. +..|-.-+++..++-+.+... ...+..++ ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888888765 666777777666554444321 12222222 344555443222 2567788
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCeeEEEEeecCCccEEEEEEec-------
Q 002496 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP------- 152 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p------- 152 (915)
.|..+.+...++.-. +....+.++|+|+++++.+.+ +++...+.... . ..+.|++
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----------d--~~vvfni~~iea~v 285 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----------D--WVVVFNIARIEEAV 285 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC-----------c--eEEEEchHHHHHhh
Confidence 888887777666532 245678999999999887632 22222222111 1 2233332
Q ss_pred CCCCEEEEEECCCcEEEEECCC----C-CCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE------
Q 002496 153 KDTNTFASASLDRTIKIWNLGS----P-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (915)
.+++.... .+++|.+.|..+ + .....+. -......+.++|+|+. +++++..+.+|.++|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 14555554 367899999987 3 3333443 5566789999999984 455556689999999987542
Q ss_pred ------EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC
Q 002496 222 ------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 222 ------~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+....-..+ ....+|.++|....+-.-|..|..|++.+
T Consensus 362 ~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333223 34578999998888888899999999875
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.11 E-value=0.0074 Score=67.20 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=137.3
Q ss_pred CEEEEEEcCCCCeEEEEEc-CCc----EEEEECCCCceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC-----------C
Q 002496 17 RVKSVDLHPSEPWILASLY-SGT----VCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADD-----------M 79 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~-dg~----v~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~~d-----------g 79 (915)
.+..+++||+|+++|.+.. .|. ++|+|+.+|+.+... .... ...+.|.++++.|+....+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3447899999999997643 444 999999999776532 2221 2339999998887766432 2
Q ss_pred eEEEEECCCCcee--EEEecCCC-C-EEEEEEcCCCCEEEEEEcC----CeEEEEECCCC----eeEEEEeecCCccEEE
Q 002496 80 FIRVYNYNTMDKV--KVFEAHTD-Y-IRCVAVHPTLPYVLSSSDD----MLIKLWDWEKG----WMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 80 ~i~vwd~~~~~~~--~~~~~~~~-~-i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~i~~ 147 (915)
.|..|.+.+.... ..+..... . ...+..++++++|++.+.. ..+.+.++..+ ...........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776543 45544333 3 6788999999998765432 35778888763 2333333333333333
Q ss_pred EEEecCCCCEEEEEEC---CCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC--eEEEEECCCC
Q 002496 148 VTFNPKDTNTFASASL---DRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTK 219 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~---dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 219 (915)
+... ++.+++.... .+.|...++.+... ...+..+...+.-..+...++. +++....++ .|+++++..+
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-T
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCC
Confidence 4333 3444444432 45677778877663 2244445554444444444553 444444444 5888998834
Q ss_pred cEEEEecC-CccCeEEEEEeCCCCEEEEE--E--cCCcEEEEeCCCccee
Q 002496 220 SCVQTLEG-HTHNVSAVCFHPELPIIITG--S--EDGTVRIWHATTYRLE 264 (915)
Q Consensus 220 ~~~~~~~~-~~~~i~~i~~~~~~~~l~~~--~--~dg~v~iwd~~~~~~~ 264 (915)
.....+.. ..+.|..+...++++.+... | .-+++.-||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44443332 33446666666666543322 2 1246888888877653
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.002 Score=69.43 Aligned_cols=228 Identities=11% Similarity=0.154 Sum_probs=118.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--------C
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--------K 130 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--------~ 130 (915)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-..+.+.+- ...++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876533322 000011111111110 0011112222322 2
Q ss_pred CeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--------CCCCeeEEEEEe---CCCc
Q 002496 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--------HQKGVNCVDYFT---GGDK 199 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~v~~~~~~~---~~~~ 199 (915)
+..+...+....++|++++.+ +-.++++|+.+|.+.|.|++.+..++.-.- ....++++.|.. .++.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 334445555668999999998 678999999999999999988876655321 223577787763 3332
Q ss_pred ---CEEEEEeCCCeEEEEECCC---CcE----EEEecCCccCeEEEE-EeCCC---------------------CEEEEE
Q 002496 200 ---PYLITGSDDHTAKVWDYQT---KSC----VQTLEGHTHNVSAVC-FHPEL---------------------PIIITG 247 (915)
Q Consensus 200 ---~~l~~~~~dg~i~iwd~~~---~~~----~~~~~~~~~~i~~i~-~~~~~---------------------~~l~~~ 247 (915)
..+++|...|.+.+|.+-- +.. ......+.++|..+. ++.+. .+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4789999999999997741 221 112223556666555 32221 144444
Q ss_pred EcCCcEEEEeCCCcceeeeeecCCccEEEEEE-----ecCCCEEEEEecCCeEEE
Q 002496 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGY-----MKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-----~~~~~~l~~~~~dg~v~i 297 (915)
+ +..+|++...+.+.........-....+++ ...+..|++-..+|.+++
T Consensus 233 S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred c-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 4 668999998877765544422122333444 234566677777777776
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.00068 Score=72.96 Aligned_cols=113 Identities=13% Similarity=0.171 Sum_probs=81.0
Q ss_pred CEEEEEEeCCC-CEEEEE----eCCC----eEEEEECCCCcee--EEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002496 59 PVRSAKFVARK-QWVVAG----ADDM----FIRVYNYNTMDKV--KVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 59 ~v~~l~~s~~~-~~l~~~----~~dg----~i~vwd~~~~~~~--~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
...++.||... ..+.+. +.+| .-++|++...+.. ... -.....+.|.+++|+...++.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 34677887633 344443 2344 2456766544322 111 1467789999999999999999999999999
Q ss_pred ECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002496 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
|...+.. .+....-..+.++|+| ++..|++|+..|.+.+||+.-+
T Consensus 287 D~~~~~t---~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVT---LLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCee---eeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 9887622 2223445678999999 9999999999999999998544
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00022 Score=77.54 Aligned_cols=183 Identities=13% Similarity=0.085 Sum_probs=114.2
Q ss_pred hcccCCCCEEEEEEcCCCCeEEEEEc---C-CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CC--eEE
Q 002496 10 KLAQRSERVKSVDLHPSEPWILASLY---S-GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DM--FIR 82 (915)
Q Consensus 10 ~l~~h~~~V~~v~~sp~~~~la~~~~---d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg--~i~ 82 (915)
.+..-...+..-+|+|++..++.... . ..+.++++.+++...... ..+.-..-+|+|||++|+.... || .|.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 34444566778899999997775432 2 359999999887665554 3444556799999999886644 55 566
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
++|+.++...+ +....+.-..-.|+|+|++|+..++. | .|.+++++++.....+.... . -..-.|+| ++..++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~-~~~p~~Sp-dG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-G-NSNPVWSP-DGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-C-CcCccCCC-CCCEEE
Confidence 66777665333 44333333467899999998866553 3 46777777763322222222 2 22778999 888887
Q ss_pred EEECC-Cc--EEEEECCCCCCceEEecCCCCeeEEEEEeCCC
Q 002496 160 SASLD-RT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD 198 (915)
Q Consensus 160 ~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (915)
..+.. |. |.+.|+.++.....+. .......-+|.+++.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 76643 44 6666665554333332 333334455666665
No 348
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.00071 Score=73.08 Aligned_cols=232 Identities=10% Similarity=0.086 Sum_probs=131.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEE-EEec----------------CCCEEEEEEeCCCCEEEEEeC
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVT----------------ELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~----------------~~~v~~l~~s~~~~~l~~~~~ 77 (915)
...+....|||+|+++|... ++.|.+++..++...+. ..+. -+.-..+-|||||++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 46788999999999999886 68999999877744321 1120 112356889999999887432
Q ss_pred C-C-----------------------------------eEEEEECCCCceeEE--E---ecCCCCEEEEEEcCCCCEEEE
Q 002496 78 D-M-----------------------------------FIRVYNYNTMDKVKV--F---EAHTDYIRCVAVHPTLPYVLS 116 (915)
Q Consensus 78 d-g-----------------------------------~i~vwd~~~~~~~~~--~---~~~~~~i~~l~~s~~~~~l~~ 116 (915)
| . .+.|+|+.+++.... . ......+..+.|.+++..|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 1 1 134455555543221 1 123446788999999884443
Q ss_pred E--EcC---CeEEEEECCCCeeEEEEeecCCccE---EEEEEe-cCCCCEEEEEECCCcEEE--EECCCCCCceEEecCC
Q 002496 117 S--SDD---MLIKLWDWEKGWMCTQIFEGHSHYV---MQVTFN-PKDTNTFASASLDRTIKI--WNLGSPDPNFTLDAHQ 185 (915)
Q Consensus 117 ~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~-p~~~~~l~~~~~dg~i~v--~d~~~~~~~~~~~~~~ 185 (915)
. ..+ ..+.+.|..++.............| ....|. +++..++.....+|--++ ++..++. ...+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence 3 222 3466778776533222222222222 244554 646667777777776544 4554443 33444455
Q ss_pred CCeeE-EEEEeCCCcCEEEEEeC----CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 186 KGVNC-VDYFTGGDKPYLITGSD----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 186 ~~v~~-~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
-.|.. +.|.+.++. +++++.. ...|+..++..+..+..+......-..+.|||++++++....
T Consensus 280 ~~V~~i~~~d~~~~~-iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNR-IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSE-EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCE-EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56644 566666553 4555554 235666677634455556544433368999999998876543
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00011 Score=78.72 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=82.4
Q ss_pred EEEEEEcCCCC-eEEEE----EcCCc----EEEEECCCCceeEE--EE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 18 VKSVDLHPSEP-WILAS----LYSGT----VCIWNYQSQTMAKS--FE-VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 V~~v~~sp~~~-~la~~----~~dg~----v~iwd~~~~~~~~~--~~-~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
..++.||-..+ .+.+- +.+|. -.+|++...+..+. .. .....|.|++++|+..+++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35666665333 33332 22343 45677665543221 11 3677899999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002496 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
..++... +....-.++.++|+|+|..+++|+..|.+.+||+.-+....+.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 8765332 2234456789999999999999999999999998765333333
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.02 E-value=0.025 Score=58.10 Aligned_cols=252 Identities=10% Similarity=0.086 Sum_probs=155.7
Q ss_pred CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCC------
Q 002496 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMDKVKVFEAHTD------ 100 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~------ 100 (915)
+.+.|+|..+++.+-.+...-. -.+..+|+++.+++++. .-.|.+||..|......+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999988777664332 33667999999887542 34799999999988776543221
Q ss_pred -CEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECC-CCC
Q 002496 101 -YIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPD 176 (915)
Q Consensus 101 -~i~~l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~-~~~ 176 (915)
....+.++.+++++++.. --..|.|.|+..+ +....+... + |....|..+..|.+-|.||++.-..+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 223468889999887664 3467999999988 444443322 2 222224345678899999999999887 454
Q ss_pred CceEEe----cCCCCe-eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE--EEEecCC----------ccCeEEEEEeC
Q 002496 177 PNFTLD----AHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGH----------THNVSAVCFHP 239 (915)
Q Consensus 177 ~~~~~~----~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~----------~~~i~~i~~~~ 239 (915)
...+.. ....++ ..-.+...+. .++-.+.+|.|+-.|+..... ...+... .+.-.-+++++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred EeEeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 432221 112222 2333333333 455578889999988875542 2222110 11233477887
Q ss_pred CCCEEEEEEc---CC-------cEEEEeCCCcceeeeeecCCccEEEEEEecCCC-EEEEE-ecCCeEEEe
Q 002496 240 ELPIIITGSE---DG-------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIG-YDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~~dg~v~i~ 298 (915)
..+.|.+.-. +| .|-++|+.+++.+..+... ..+.+++.+.+.+ +|.+. ..++.+.++
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 6665554322 12 3888899999998888754 4677999998876 44333 346778774
No 351
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00063 Score=74.21 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=101.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCC
Q 002496 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~ 177 (915)
+...|.--+++..+++++.|+.-|.+++|+-.++........+..+.+..+..++ +..++|.|+..|.|.++-++...+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4445666677778899999999999999998887555555545556667777887 788899999999999998876443
Q ss_pred ceEE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC----cEEEEecCCccCeEEEEEeC
Q 002496 178 NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 178 ~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~i~~~~ 239 (915)
.... ..|+..|++++|++++. .+.+|...|+|..-.+.+. ...+.+....+.|..+....
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred CcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2211 23678899999999998 5999999999998887761 12223333455666665543
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00045 Score=75.13 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=123.0
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe---CC-CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002496 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA---DD-MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
.+.+-|.. +...+.+......+..-+|+|+++.++..+ .. ..+.++++++++...... -.+.-....|+|||++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444543 545555555566788889999999876552 23 469999999887665554 2233345789999998
Q ss_pred EEEEE-cCCe--EEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEE-ECCCc--EEEEECCCCCCceEEecCCCC
Q 002496 114 VLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA-SLDRT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~-~~dg~--i~v~d~~~~~~~~~~~~~~~~ 187 (915)
|+.++ .||. |.+.|+.++. ..+ +....+.-..-.|+| +++.++.. +..|. |.+++...+.. ..+......
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-cee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 87554 4554 6666777763 222 333333334667999 66655554 44554 66667666554 333333333
Q ss_pred eeEEEEEeCCCcCEEEEEeC-CCe--EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 188 VNCVDYFTGGDKPYLITGSD-DHT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
-..-.|+|+|+. ++..+. +|. |.+.|+.++...+.+. .......-+|.|++..++..+.
T Consensus 328 ~~~p~~SpdG~~--i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 328 NSNPVWSPDGDK--IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcCccCCCCCCE--EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 347789999984 544443 444 6677776665444443 3333445678888876665443
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.0099 Score=65.14 Aligned_cols=191 Identities=8% Similarity=0.003 Sum_probs=105.7
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee--cCCccE-----EEEEEec
Q 002496 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYV-----MQVTFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i-----~~~~~~p 152 (915)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.++++|+.+.. ...+. .....| ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC
Confidence 58899864 67777665444899999999865 56677799999999997552 11111 011122 2222221
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCC---------eeE-EEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002496 153 KDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKG---------VNC-VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~---------v~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
+| ++.-..++.+.+..-.... ....+...... ... ..++.+ ....+....++.+.+.+-.....
T Consensus 138 -~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~--~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 138 -NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD--RVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred -CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC--cceEEEEecCCEEEEEEcccccc
Confidence 22 3333445555544322211 11111100000 000 112222 22344444455555444322111
Q ss_pred EEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC-CccEEEEEEecCC
Q 002496 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSS 283 (915)
Q Consensus 222 ~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~ 283 (915)
+. ..+++..+++||+|++|+.-..+|.+.+.+..-.+....+... ......+.|.-+.
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 22 2468999999999999999999999999886655555555544 3456778887664
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.97 E-value=0.0055 Score=61.16 Aligned_cols=200 Identities=12% Similarity=0.100 Sum_probs=114.3
Q ss_pred EEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECC
Q 002496 52 SFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (915)
Q Consensus 52 ~~~~~~~~v~~l~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~ 129 (915)
.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3444455699999999865 5556666888888886 47888777533 3568889998888766666568999999884
Q ss_pred CCe-----eEEEEe-----ecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCceEE--------ecCCCCe
Q 002496 130 KGW-----MCTQIF-----EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTL--------DAHQKGV 188 (915)
Q Consensus 130 ~~~-----~~~~~~-----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~--------~~~~~~v 188 (915)
... ...+.+ ..++..+-.++|+| .++.|+++-...-..+|.+.. ....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 321 111111 13455689999999 556666666766667776654 2221111 1133457
Q ss_pred eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc---------cCeEEEEEeCCCCEEEEEEcCCcEEEE
Q 002496 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~i~~~~~~~~l~~~~~dg~v~iw 256 (915)
..+.++|.... +++....+..|..+| .+|+.+..+.-.. ...-.|+|.++|++.+ .++-+..++|
T Consensus 174 S~l~~~p~t~~-lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGH-LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTE-EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cceEEcCCCCe-EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 88999887654 677777889999999 5687766554322 2467899999986444 4565555544
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=0.0017 Score=71.84 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=132.3
Q ss_pred EcCCCCeEEEEE-cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceeEEEec
Q 002496 23 LHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 23 ~sp~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~ 97 (915)
++|||+.+...+ +.+.+.+.|.++.+...++.... ....+.++|+|+++++.+.+ +++...+..+...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 567887664433 36778899998888877777544 45778999999999888642 2333333322222222211
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC----CeeEEEEeecCCccEEEEEEecCCCCEEE-EEECCCcEEEEEC
Q 002496 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK----GWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNL 172 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~dg~i~v~d~ 172 (915)
. .+ -.+.++|++...+ ++.|.+.|..+ +......+. -......+.++| |+.+++ ++..+.+|.++|+
T Consensus 279 ~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 279 A--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred H--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEC
Confidence 0 00 1334577776663 56899999987 334444433 345568899999 666555 4556899999999
Q ss_pred CCCCC------------ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC----------CcEEEEecCCcc
Q 002496 173 GSPDP------------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------KSCVQTLEGHTH 230 (915)
Q Consensus 173 ~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~ 230 (915)
.+.+. ...... .......+|.++|. ...+-.-|..|..||+.. ...+..+.-|..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~--aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN--AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC--EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 87543 122222 22334567766654 788888899999999875 234444544443
Q ss_pred CeEE-----EEEeCCCCEEEEEEc
Q 002496 231 NVSA-----VCFHPELPIIITGSE 249 (915)
Q Consensus 231 ~i~~-----i~~~~~~~~l~~~~~ 249 (915)
+..- =.-.|+|++|++...
T Consensus 428 pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 428 PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cceeeecCCCcCCCCCCEEEEccc
Confidence 3221 123678888877653
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.012 Score=61.35 Aligned_cols=227 Identities=12% Similarity=0.173 Sum_probs=133.4
Q ss_pred CCCCeEEEEEcCCcEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------
Q 002496 25 PSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-------- 95 (915)
Q Consensus 25 p~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------- 95 (915)
..++.|++|+.+| +.+++... ....+.. +..+|..+...|+-+.+++-+ |+.+.++++.+.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999888 99999833 3332222 333499999999888777765 499999998765443311
Q ss_pred ------ecCCCCEEEEE--EcCCCCEEEEEEcCCeEEEEECCCCe----eEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 96 ------EAHTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 96 ------~~~~~~i~~l~--~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
-.....+...+ -.+.+...++......|.+|.+.... ...+.+. -...+.+++|. ++.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEeC
Confidence 01222344444 12233344444455589999887531 1222322 34678899997 467777764
Q ss_pred CCcEEEEECCCCCCceEEecCC------------CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEE--EecCCc
Q 002496 164 DRTIKIWNLGSPDPNFTLDAHQ------------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHT 229 (915)
Q Consensus 164 dg~i~v~d~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 229 (915)
+ ...+.|+.++.....+.... .++..+... ++. +|++ . +..-.+.|. .|++.+ .+. -.
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e--~Ll~-~-~~~g~fv~~-~G~~~r~~~i~-W~ 228 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE--FLLC-Y-DNIGVFVNK-NGEPSRKSTIQ-WS 228 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce--EEEE-e-cceEEEEcC-CCCcCcccEEE-cC
Confidence 4 57888998766544332111 223333332 222 4543 3 233333443 354433 222 12
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002496 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
..+.++++.. ++|++.+. +.|.||++.++++++++...
T Consensus 229 ~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3455666643 57777665 46999999999998888755
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.89 E-value=4.2e-06 Score=89.15 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=129.4
Q ss_pred CCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCeeE-EEEeecCCccEEEEEEecCCCCEEEEEEC----CCcEEEEE
Q 002496 99 TDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASL----DRTIKIWN 171 (915)
Q Consensus 99 ~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~----dg~i~v~d 171 (915)
...+.|++++-+. ..+++|..+|.|.+-..+..... .....++..+.++++|++-|.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4467777776543 46889999999999988754322 34556788899999999988888888743 56799999
Q ss_pred CCCC--CCc--eEEec-CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEE
Q 002496 172 LGSP--DPN--FTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIII 245 (915)
Q Consensus 172 ~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~-~~~~l~ 245 (915)
+.+. .|. ..+.+ ......+++|..+.+ ++++|...+.+.++|++.. +.....-....+..+..+| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 222 12222 345566888874443 8889999999999999832 2111122334566788888 667777
Q ss_pred EEEcCCcEEEEe-CCCcc-eeeeeec----CCccEEEEEEecCCC--EEEEEecCCeEEEe
Q 002496 246 TGSEDGTVRIWH-ATTYR-LENTLNY----GLERVWAIGYMKSSR--RIVIGYDEGTIMVK 298 (915)
Q Consensus 246 ~~~~dg~v~iwd-~~~~~-~~~~~~~----~~~~v~~i~~~~~~~--~l~~~~~dg~v~i~ 298 (915)
+.. ||.|.+|| ..+-+ ++..+.. ...++..++|+|... ..+..-+.++|+..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 765 99999999 33222 2222221 223589999999743 33334445566553
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.86 E-value=0.0063 Score=64.93 Aligned_cols=213 Identities=14% Similarity=0.194 Sum_probs=124.2
Q ss_pred CeEEEEECCCCceeEEEecC-CCCEEEE---EEcCC----CCEEEEEEc---------C-CeEEEEECCCC----eeEEE
Q 002496 79 MFIRVYNYNTMDKVKVFEAH-TDYIRCV---AVHPT----LPYVLSSSD---------D-MLIKLWDWEKG----WMCTQ 136 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~~~~-~~~i~~l---~~s~~----~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 136 (915)
+.|++.|..+.+.+..+.-. ...+.++ .+..+ .++|++|+. . |.|.++++... .++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888898888877666422 2334444 34432 467887754 2 89999999883 12221
Q ss_pred -EeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEE
Q 002496 137 -IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 137 -~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
......++|++++-. ++. ++++. .+.|.+|++...+..........++...+....++ ++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEE
Confidence 223457889998876 344 44444 58999999988773333332333334444444444 799999888888885
Q ss_pred CCC-CcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCC-------c--ceeeeeecC-CccEEEE---EE
Q 002496 216 YQT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-------Y--RLENTLNYG-LERVWAI---GY 279 (915)
Q Consensus 216 ~~~-~~~~~~~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~-------~--~~~~~~~~~-~~~v~~i---~~ 279 (915)
++. +..+..+. .....++++.+-+++..++++..+|.+.++.... + ++......+ ...|.++ ++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 543 33233332 2345588888987767999999999999987652 1 222222222 2456666 44
Q ss_pred ecC--CC------EEEEEecCCeEEE
Q 002496 280 MKS--SR------RIVIGYDEGTIMV 297 (915)
Q Consensus 280 ~~~--~~------~l~~~~~dg~v~i 297 (915)
.|. +. .++.++.+|.+..
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eecCCCCcccccceEEEEecCCEEEE
Confidence 441 21 3777888888874
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.023 Score=61.83 Aligned_cols=261 Identities=15% Similarity=0.100 Sum_probs=165.8
Q ss_pred CEEEEEEcCCCCeEEEEEc-CCcEEEEECCCCceeEEE-EecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeE
Q 002496 17 RVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~ 93 (915)
....+...|++..+.+... ...+.+.+.. ...+... ......-..++.++.+..+.+. ..++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566788888865555443 2245555544 2222221 1111334577888888855544 456899999988777766
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEE-EEEECCCcEEE
Q 002496 94 VFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASLDRTIKI 169 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~~~~~dg~i~v 169 (915)
....-. ....++++|+++.+.++.. ++++.+.|-.++..... ......+ ..++++| +++.+ ++-..++.|.+
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSV 186 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCc-ceEEECC-CCCeEEEEecCCCeEEE
Confidence 665322 6678999999988877765 68899999888844444 3333333 8899999 66644 44457899999
Q ss_pred EECCCCCCce-E---EecCCCCeeEEEEEeCCCcCEEEEEeC-CCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCE
Q 002496 170 WNLGSPDPNF-T---LDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPI 243 (915)
Q Consensus 170 ~d~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~i~~~~~~~~ 243 (915)
.|..+..... . ..........+.+.+++..-|+..... ++.+...|..++........-.. ....+..+|+|..
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 9976554332 1 112233446788999988522222222 26899999988776654221111 4567899999998
Q ss_pred EEEEEc-CCcEEEEeCCCcceeeeeecCCc---cEEEEEEecC
Q 002496 244 IITGSE-DGTVRIWHATTYRLENTLNYGLE---RVWAIGYMKS 282 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~ 282 (915)
+.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 887744 47899999888777766554422 3445555544
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.045 Score=59.63 Aligned_cols=252 Identities=17% Similarity=0.172 Sum_probs=160.7
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCCCEEEE
Q 002496 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~ 116 (915)
+.+++..+......+..+. ....+...+++..+.+... ...+...+.. ...+... .........++.++.+..+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6677766655555555443 4456788888865554433 2345555554 2222222 211144567889998886554
Q ss_pred E-EcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC---CCcEEEEECCCCCCceEEecCCCCeeEEE
Q 002496 117 S-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (915)
Q Consensus 117 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 192 (915)
. ..+..|.+.|..+.........+. ....++++| ++..+.++.. ++++.+.|..+.+..........+ ..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 4 445899999987764444444443 567889999 5545544444 689999999888877775544444 8899
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEE-E---ecCCccCeEEEEEeCCCCEEEEEEcC---CcEEEEeCCCcceee
Q 002496 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-T---LEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~ 265 (915)
+.|++.. .+++-..++.|.+.|..+....+ . ..........+.++|+|.++.+.... +.+...|..++....
T Consensus 167 ~~p~g~~-vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNK-VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCe-EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999885 34444578999999977655442 1 01122334678999999966665443 589999988877665
Q ss_pred e-eecCCccEEEEEEecCCCEEEEEecC-CeEEE
Q 002496 266 T-LNYGLERVWAIGYMKSSRRIVIGYDE-GTIMV 297 (915)
Q Consensus 266 ~-~~~~~~~v~~i~~~~~~~~l~~~~~d-g~v~i 297 (915)
. ..........+..+|+|..+.+.... +.+.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 4 22221145678999999988887444 55554
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.75 E-value=0.019 Score=65.09 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=138.1
Q ss_pred CeEEEEEcCCcEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceeEEEec
Q 002496 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~l~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~ 97 (915)
..+++++.++.|.-.|..+|+.+........ .+++--..-++ .+++++. +|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4577778899999999999998876653211 11111111133 4555543 68999999999998876542
Q ss_pred CCC-------------------------------CE-EEEEEcCCCCEEEEEEcC-----C-----------eEEEEECC
Q 002496 98 HTD-------------------------------YI-RCVAVHPTLPYVLSSSDD-----M-----------LIKLWDWE 129 (915)
Q Consensus 98 ~~~-------------------------------~i-~~l~~s~~~~~l~~~~~d-----g-----------~i~iwd~~ 129 (915)
-.. .+ ..+++.|...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 11 134666666667666522 2 56777888
Q ss_pred CCeeEEEEeecCCccE---------EEEEEecCCCC---EEEEEECCCcEEEEECCCCCCceE--------E----ecCC
Q 002496 130 KGWMCTQIFEGHSHYV---------MQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFT--------L----DAHQ 185 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i---------~~~~~~p~~~~---~l~~~~~dg~i~v~d~~~~~~~~~--------~----~~~~ 185 (915)
+++ ..-.+....+.+ .-+.... ++. .++.+..+|.+.+.|-.+++++.. . ....
T Consensus 280 TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TGK-IKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cCC-EEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 873 333333221111 1122212 444 788899999999999998886421 1 0000
Q ss_pred -CCe----------------------------eEEEEEeCCCcCEEEEEe------------------------------
Q 002496 186 -KGV----------------------------NCVDYFTGGDKPYLITGS------------------------------ 206 (915)
Q Consensus 186 -~~v----------------------------~~~~~~~~~~~~~l~~~~------------------------------ 206 (915)
.++ ..+++.|... ++.+..
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g--~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTG--LFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCC--EEEEecccccccccccccccCCCCceeccccccCCC
Confidence 000 0133333222 222111
Q ss_pred ---CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecC
Q 002496 207 ---DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 207 ---~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.-|.|.-+|+.+++.............+. +.-.+.+++.++.+|.++.+|..||+.+..++..
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 12568888999998887765332222222 2224457778888999999999999999888765
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.71 E-value=0.12 Score=58.64 Aligned_cols=190 Identities=9% Similarity=0.022 Sum_probs=115.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEE---E-------EEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002496 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIR---C-------VAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 69 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~---~-------l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
+..+++++.++.|.-+|..+|+.+..+.... ..+. + +++ .+..++.++.|+.|.-.|..+++.+-+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577788888899999999999888765321 1111 1 122 2346888889999999999988544332
Q ss_pred ee-cCC--ccEEE-EEEecCCCCEEEEEEC------CCcEEEEECCCCCCceEEecCCCC--------------------
Q 002496 138 FE-GHS--HYVMQ-VTFNPKDTNTFASASL------DRTIKIWNLGSPDPNFTLDAHQKG-------------------- 187 (915)
Q Consensus 138 ~~-~~~--~~i~~-~~~~p~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~-------------------- 187 (915)
-. .+. ..+.+ .... ++ .+++++. +|.|.-+|..+++.+..+......
T Consensus 147 ~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 21 111 01111 1111 33 4555432 688999999998877665322110
Q ss_pred -----------ee-EEEEEeCCCcCEEEEEeCC-----C-----------eEEEEECCCCcEEEEecCCccCeE------
Q 002496 188 -----------VN-CVDYFTGGDKPYLITGSDD-----H-----------TAKVWDYQTKSCVQTLEGHTHNVS------ 233 (915)
Q Consensus 188 -----------v~-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~------ 233 (915)
+. .+++.+..+ ++..+..+ + .|.-.|.+||+....++...+.++
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~--lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETN--LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCccccCCCCccCceeEcCCCC--eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence 11 123333333 45444421 2 577789999998887765332221
Q ss_pred ---EEEEeCCCC---EEEEEEcCCcEEEEeCCCcceee
Q 002496 234 ---AVCFHPELP---IIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 234 ---~i~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
-+.+..+|+ .++.+..+|.+.+.|..+|+.+.
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 222334665 78899999999999999998764
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.69 E-value=0.06 Score=56.04 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=86.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEE---------
Q 002496 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT--------- 224 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 224 (915)
.++.|+.|+.+| +.++++.......... +...|..+...+.-+ .+++-+ |+.++++++..-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578899999888 9999983333222222 233488998888776 344443 59999999876433221
Q ss_pred -----ecCCccCeEEEE--EeCCC-CEEEEEEcCCcEEEEeCCCc-----ceeeeeecCCccEEEEEEecCCCEEEEEec
Q 002496 225 -----LEGHTHNVSAVC--FHPEL-PIIITGSEDGTVRIWHATTY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 225 -----~~~~~~~i~~i~--~~~~~-~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (915)
.......+..++ -.+.+ ..|+++ ....|.+|..... +....+..+ ..+.+++|. ++.+++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC
Confidence 011223344444 12233 344444 4558888876542 455566555 778899998 668889988
Q ss_pred CCeEEEecC
Q 002496 292 EGTIMVKIG 300 (915)
Q Consensus 292 dg~v~i~~~ 300 (915)
++...+.+.
T Consensus 157 ~~f~~idl~ 165 (275)
T PF00780_consen 157 KGFYLIDLN 165 (275)
T ss_pred CceEEEecC
Confidence 887777543
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.035 Score=59.18 Aligned_cols=211 Identities=15% Similarity=0.264 Sum_probs=127.8
Q ss_pred CcEEEEECCCCceeEEEEecC-CCEEEEE---EeC----CCCEEEEEeC---------C-CeEEEEECCCC----ceeEE
Q 002496 37 GTVCIWNYQSQTMAKSFEVTE-LPVRSAK---FVA----RKQWVVAGAD---------D-MFIRVYNYNTM----DKVKV 94 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~-~~v~~l~---~s~----~~~~l~~~~~---------d-g~i~vwd~~~~----~~~~~ 94 (915)
+.|++.|..+.+.+..+.... ..+.+++ +.. ...+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888887766533 2344443 332 2577888754 2 89999999874 23332
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe-eEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEE
Q 002496 95 F--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 95 ~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d 171 (915)
+ ....++|++++-- ++ +|+++. .+.|.+|++.... ............+.++... ++++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 2 2457889988876 33 455554 4789999998875 3333333344567777765 56999999989988875
Q ss_pred CCCC-CCceEE--ecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-------Cc--E--EEEecCCccCeEEE--
Q 002496 172 LGSP-DPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KS--C--VQTLEGHTHNVSAV-- 235 (915)
Q Consensus 172 ~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~~~~~i~~i-- 235 (915)
.+.. .....+ ......+.++.+.++++ .++++..+|.+.++.... +. . ...+. ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence 5432 222222 23345577888887764 799999999999998752 22 2 22222 23456666
Q ss_pred -EEeC--CC------CEEEEEEcCCcEEEE
Q 002496 236 -CFHP--EL------PIIITGSEDGTVRIW 256 (915)
Q Consensus 236 -~~~~--~~------~~l~~~~~dg~v~iw 256 (915)
++.| .+ +.++.++.+|.|...
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4444 12 247777888888743
No 365
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00021 Score=76.79 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=77.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
.-.|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|..+++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568999999999999999999999999987 677788887877787 99999999999999999999999999987776
Q ss_pred EEe-cCCCCEEEEEEc
Q 002496 94 VFE-AHTDYIRCVAVH 108 (915)
Q Consensus 94 ~~~-~~~~~i~~l~~s 108 (915)
.+. .-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 532 223456666665
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0066 Score=70.04 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=99.8
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCC-----cCEEEEEeCCCeEEEEECCCCc--EEEE-
Q 002496 154 DTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKS--CVQT- 224 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~- 224 (915)
+.++|+... ....|+-.|+..|+.+..+..+... ....+.|+.+ ..-.++|-++..+..||.|-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 445555443 4578999999999999988876644 2344445321 1136778888999999998632 2221
Q ss_pred ec--CCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcce-eeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 225 LE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 225 ~~--~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
.. ......+|++-+.+| +||+|+.+|.||+||- .|+. ...+.+-..+|..|..+.||++|++.+..-.+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 11 134467888888887 7999999999999994 4443 33444546899999999999999998887777663
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.62 E-value=0.23 Score=57.25 Aligned_cols=455 Identities=13% Similarity=0.129 Sum_probs=210.9
Q ss_pred CCEEEEEEcCC----CCeEEEEEc---CCcEEEEECCCC-ceeEE--EEecCCCEEEEE--EeCC-CCEEEEEeCCCeEE
Q 002496 16 ERVKSVDLHPS----EPWILASLY---SGTVCIWNYQSQ-TMAKS--FEVTELPVRSAK--FVAR-KQWVVAGADDMFIR 82 (915)
Q Consensus 16 ~~V~~v~~sp~----~~~la~~~~---dg~v~iwd~~~~-~~~~~--~~~~~~~v~~l~--~s~~-~~~l~~~~~dg~i~ 82 (915)
++|..++.-.. ++.+++++. ||+++|....-+ ..... +.+ -..+..+. ++++ ..+|+.+-.+ .-+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~-eTr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFIS-ETR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEecc-ceE
Confidence 47777776542 235665543 899999864322 11111 222 23455555 3332 1255554433 334
Q ss_pred EEECCCCceeE-EEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 83 VYNYNTMDKVK-VFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 83 vwd~~~~~~~~-~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+..+.. +... ...+-......+..|. .++.|+=...+ .|++++-.. ....+....+ ++....+- +...++.
T Consensus 432 vl~i~~-e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~-~iRl~ss~~---~~~~W~~p~~-~ti~~~~~-n~sqVvv 504 (1096)
T KOG1897|consen 432 VLNISE-EVEETEDPGFSTDEQTIFCSTINGNQLVQVTSN-SIRLVSSAG---LRSEWRPPGK-ITIGVVSA-NASQVVV 504 (1096)
T ss_pred EEEEcc-ceEEeccccccccCceEEEEccCCceEEEEecc-cEEEEcchh---hhhcccCCCc-eEEEEEee-cceEEEE
Confidence 455432 2111 1112222233333332 23333333332 466665441 1222222222 22222222 4557777
Q ss_pred EECCCcEEEEECCCCCCceE-EecCCCCeeEEEEEeCCCc----CEEEEEeCCCeEEEEECC-CCcEEEEe--cC--Ccc
Q 002496 161 ASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDK----PYLITGSDDHTAKVWDYQ-TKSCVQTL--EG--HTH 230 (915)
Q Consensus 161 ~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~-~~~~~~~~--~~--~~~ 230 (915)
++.++.+...++..+..... -......|.|+.++|-++. +++++|.++..+.+.-.- +...+... .+ -..
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 77777777777655441111 1234578999999986543 268888887766655433 22222211 11 122
Q ss_pred CeEEEEEeCCCCEEEEEEcCCcEEEE--eCCCcceeeee--ecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcc--
Q 002496 231 NVSAVCFHPELPIIITGSEDGTVRIW--HATTYRLENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP-- 304 (915)
Q Consensus 231 ~i~~i~~~~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~-- 304 (915)
.|.-.++-.+..+|.++..||.+.-| |..+|..-..- ..+..++.=-.|+..++.-+.+..|.-..++..+..-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 34455666667899999999998765 55555543222 2233344444454444333333333322222111110
Q ss_pred ----------eeEecC---CCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002496 305 ----------VASMDN---SGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 305 ----------~~~~~~---~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
+..+.. ...++....+.+....+..... + ..+. -.....++.+++.+...++.+.
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk---------l--~irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK---------L--HIRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhh---------c--ceee-ecCCCChhheEecccceEEEEE
Confidence 001110 0112222223333222221110 0 0111 1112356788888866666665
Q ss_pred cC------C---------cEEEEEeeccc---------ccCccceeEEEEecC-CcEEEEec-----------CCeEEEe
Q 002496 372 GD------G---------EYIIYTALAWR---------NRSFGSALEFVWSSD-GEYAVRES-----------SSKIKIF 415 (915)
Q Consensus 372 ~~------~---------~~~i~~~~~~~---------~~~~~~~~~~~~s~~-g~~l~~~~-----------~~~i~v~ 415 (915)
++ + .+.+|+-.+.+ ....-++.+..|..| +.|+++++ .|.|.||
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 42 1 12223222221 111123455557766 56666653 1456665
Q ss_pred ccCc-cceeeee---cCcccc--eeecCcEEEEeeCCeEEEEeccCCcEEEEEE---ccccEEEEcCCCCEEEEEeCC-e
Q 002496 416 SKNF-QEKRSVR---PTFSAE--RIYGGTLLAMCSNDFICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDT-S 485 (915)
Q Consensus 416 ~~~~-~~~~~~~---~~~s~~--~i~~g~~La~~~~~~v~~~d~~~~~~i~~~~---~~i~~v~~s~dg~~la~~~~~-~ 485 (915)
.... .....+. ..-++- ..+.|++|| +-+..|++|+|.+.+.++.-. .++..+...-.|..+++++-- +
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~fngkllA-~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVEFNGKLLA-GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhhhCCeEEE-ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 4322 1111110 011111 112455554 444589999999986665432 477788888889999998743 4
Q ss_pred EEEEEec
Q 002496 486 FYILKYN 492 (915)
Q Consensus 486 ~~~~~~~ 492 (915)
+-++.|.
T Consensus 892 itll~y~ 898 (1096)
T KOG1897|consen 892 ITLLQYK 898 (1096)
T ss_pred EEEEEEe
Confidence 4455543
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00029 Score=75.76 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=76.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE-EEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+.-+.|+|.-..+|++..+|.|.+..++ .+.+.++..|...++ +++|.|||+.|++|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 788999987777777 99999999999999999999999999884444
Q ss_pred EEeecCCccEEEEEEe
Q 002496 136 QIFEGHSHYVMQVTFN 151 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~ 151 (915)
.........|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 3322333445555554
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.046 Score=56.78 Aligned_cols=218 Identities=11% Similarity=0.110 Sum_probs=130.0
Q ss_pred EEEcCCCCeEE-EEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe---
Q 002496 21 VDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (915)
Q Consensus 21 v~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--- 96 (915)
..|.|+...|+ +--..+.|+-|+..+++. ..+. +.+.+.++.....+..|+++.. | +.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecccc
Confidence 35778777444 444578899999776643 3344 3334455555555555555433 2 5666766665533322
Q ss_pred --cCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEEC
Q 002496 97 --AHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 97 --~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
......+.+...|+|.+.++... -|.|+.+|. .+ ........+-..-..++||| +++.|..+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 11235667888999886665433 143444444 33 44555555555567899999 6666655544
Q ss_pred -CCcEEEEECCC--C----CC-ceEEecCCCCeeEEEEEeCCCcCEEEEEeCCC-eEEEEECCCCcEEEEecCCccCeEE
Q 002496 164 -DRTIKIWNLGS--P----DP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 164 -dg~i~v~d~~~--~----~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~ 234 (915)
.+.|..|++.. + +. ...+....+..-.++...+|. +.+++..+| .|.+|+.. |+.+..+......+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~--lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN--LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC--EEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 58888887752 1 11 111222344555666665665 444554444 99999988 9999888877677888
Q ss_pred EEEeC-CCCEEEEEE
Q 002496 235 VCFHP-ELPIIITGS 248 (915)
Q Consensus 235 i~~~~-~~~~l~~~~ 248 (915)
++|-. +.+.|.+.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 88864 445444443
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.50 E-value=0.049 Score=58.63 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=59.2
Q ss_pred EEEEcCCCCeEEEEEcCCcEEE---EECC-CC----ceeEEEEe---cC--CCEEEEEEeC-----------CCCEEEEE
Q 002496 20 SVDLHPSEPWILASLYSGTVCI---WNYQ-SQ----TMAKSFEV---TE--LPVRSAKFVA-----------RKQWVVAG 75 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~i---wd~~-~~----~~~~~~~~---~~--~~v~~l~~s~-----------~~~~l~~~ 75 (915)
.++.+|++..||.|..+..+.+ |+.. .+ .......+ ++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987665555 5331 11 12222221 11 4677777654 35679999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC
Q 002496 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 109 (915)
..+|.|++|.. +|..+..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999986 5666655556788888887754
No 371
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.50 E-value=0.16 Score=52.36 Aligned_cols=270 Identities=9% Similarity=0.061 Sum_probs=122.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC----CccEEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002496 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~ 174 (915)
..++..|.|.....-+++| ..+.| +-..+.+.......... .....++.|.. ...+++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence 4578999999555555555 45544 33334442222221111 23466788864 4455554 444 44444455
Q ss_pred CCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002496 175 PDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 175 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~d 250 (915)
++.=..+. ........+....++ .....+..|.|+.= ...|+. ........+.+..+..+++|+++++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 55433332 112333444444333 24444455554332 122332 23334455778899999999988888765
Q ss_pred CcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeec
Q 002496 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
....-||.-...-...-.....+|.++.|+|++....++ ..|.+++-. ..+..--|.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~---------~~~~~~~w~------------- 222 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD---------DPDDGETWS------------- 222 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----------TTEEEEE--------------
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc---------CCCCccccc-------------
Confidence 556677743211111122245789999999997765544 777777621 000000000
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec---ccc-----cCccceeEEEEecCCc
Q 002496 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA---WRN-----RSFGSALEFVWSSDGE 402 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~---~~~-----~~~~~~~~~~~s~~g~ 402 (915)
....++......+-.+++.+++...|+++.|.+.. .... |+. ........+.|.++.+
T Consensus 223 -------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 223 -------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp ---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred -------------cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 00111122233356889999999999988886554 2222 221 1234556777776666
Q ss_pred EEEEecCCeEEEe
Q 002496 403 YAVRESSSKIKIF 415 (915)
Q Consensus 403 ~l~~~~~~~i~v~ 415 (915)
-++.+.+|.|--|
T Consensus 289 gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE-STTEEEEE
T ss_pred eEEECCCcEEEEe
Confidence 6777777765433
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.47 E-value=0.15 Score=56.77 Aligned_cols=221 Identities=12% Similarity=0.077 Sum_probs=117.2
Q ss_pred EEEEEeCCCCEEEEEe-CCC----eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-----------eEE
Q 002496 61 RSAKFVARKQWVVAGA-DDM----FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----------LIK 124 (915)
Q Consensus 61 ~~l~~s~~~~~l~~~~-~dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-----------~i~ 124 (915)
....+||+|++++.+- ..| .|+++|+.+|+.+...-... ....+.|.++++.|+....+. .|+
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3578899999998763 333 69999999997765421111 123499999988776654332 378
Q ss_pred EEECCCCeeE-EEEeecCCcc--EEEEEEecCCCCEEEEEEC-C---CcEEEEECCCC----CCceEEecCCCCeeEEEE
Q 002496 125 LWDWEKGWMC-TQIFEGHSHY--VMQVTFNPKDTNTFASASL-D---RTIKIWNLGSP----DPNFTLDAHQKGVNCVDY 193 (915)
Q Consensus 125 iwd~~~~~~~-~~~~~~~~~~--i~~~~~~p~~~~~l~~~~~-d---g~i~v~d~~~~----~~~~~~~~~~~~v~~~~~ 193 (915)
.|.+.+.... ..++...... ...+..++ ++++++..+. . ..+.+.++..+ .....+......+....-
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888766322 3444443332 56788888 7777665433 2 34777788764 233344434444433332
Q ss_pred EeCCCcCEEEEEe---CCCeEEEEECCCCc---EEEEecCCcc--CeEEEEEeCCCCEEEEEEcCC--cEEEEeCCCcce
Q 002496 194 FTGGDKPYLITGS---DDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDG--TVRIWHATTYRL 263 (915)
Q Consensus 194 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~---~~~~~~~~~~--~i~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~~ 263 (915)
+. ++. +++... ..+.|...++.+.. ....+-.+.. .+..+....+ .+++....++ .|+++++..+..
T Consensus 285 ~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCcE
Confidence 33 332 333332 24677777877654 2324444444 3555555433 2444444554 478889883333
Q ss_pred eeeeec-CCccEEEEEEecCCCEE
Q 002496 264 ENTLNY-GLERVWAIGYMKSSRRI 286 (915)
Q Consensus 264 ~~~~~~-~~~~v~~i~~~~~~~~l 286 (915)
...+.. ..+.|..+...++++.+
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEE
T ss_pred EeeecCCcceEEeccCCCCCCCEE
Confidence 333332 33444444444444433
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.40 E-value=0.45 Score=55.04 Aligned_cols=419 Identities=11% Similarity=0.125 Sum_probs=209.0
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCC-----
Q 002496 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTL----- 111 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~----- 111 (915)
.|++++-. + ....+. ..+.++....+.+...++.++.++.+....+..+...... ......|.|+.++|-|
T Consensus 471 ~iRl~ss~-~-~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA-G-LRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch-h-hhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 35666532 2 223333 2344555555666677888887777777777655422221 1234579999999742
Q ss_pred -CEEEEEEcCCeEEEEECC-CCeeEEEE-eec--CCccEEEEEEecCCCCEEEEEECCCcEEEEECCC--CCCc--eEEe
Q 002496 112 -PYVLSSSDDMLIKLWDWE-KGWMCTQI-FEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPN--FTLD 182 (915)
Q Consensus 112 -~~l~~~~~dg~i~iwd~~-~~~~~~~~-~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~--~~~~--~~~~ 182 (915)
+++++|..+..+.+.-.. ........ +.+ -...|.-..+-. +..+|.++..||.+..|-+.. +... ++..
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~ 626 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVT 626 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccc
Confidence 267888777655544322 22122222 111 123344444544 578999999999987765543 3221 1111
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE-EeCC-C-CEEEEEEcCCcEEEEeCC
Q 002496 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC-FHPE-L-PIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~-~~~~-~-~~l~~~~~dg~v~iwd~~ 259 (915)
-...|+.--.|+..+.. .+++ .+|+-..+|..+ ++.+.+--. -..+..+| |+.+ . ..++++. .+.+++.-+.
T Consensus 627 lGt~P~~Lr~f~sk~~t-~vfa-~sdrP~viY~~n-~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid 701 (1096)
T KOG1897|consen 627 LGTQPISLRTFSSKSRT-AVFA-LSDRPTVIYSSN-GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTID 701 (1096)
T ss_pred cCCCCcEEEEEeeCCce-EEEE-eCCCCEEEEecC-CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEec
Confidence 23345555556655543 3443 445555566543 443322111 11111111 2221 1 2455544 5567777665
Q ss_pred Ccce--eeeeecCCccEEEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceecc
Q 002496 260 TYRL--ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVT 337 (915)
Q Consensus 260 ~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~ 337 (915)
.-+. ++++..+ .....+++.+....+++.+......... +.....+..+. +-
T Consensus 702 ~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~----------------~~ee~~~s~l~---------vl 755 (1096)
T KOG1897|consen 702 EIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEY----------------YGEEYEVSFLR---------VL 755 (1096)
T ss_pred chhhcceeeecCC-CChhheEecccceEEEEEecccccchhh----------------cCCcceEEEEE---------Ee
Confidence 4332 2333333 5567788888666666665544333210 00011111111 11
Q ss_pred CCcee-eeeeeecCCccc--CCceEEECCC-CCEEEEEc-----------CCcEEEEEeeccc-cc------CccceeEE
Q 002496 338 DGERL-PLAVKELGTCDL--YPQSLKHNPN-GRFVVVCG-----------DGEYIIYTALAWR-NR------SFGSALEF 395 (915)
Q Consensus 338 ~g~~~-~~~~~~~~~~~~--~~~~l~~s~~-g~~lav~~-----------~~~~~i~~~~~~~-~~------~~~~~~~~ 395 (915)
|.... .+...++..++. .+-+..|..| +.+++||+ .|++++|...... .+ -.|.+.++
T Consensus 756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL 835 (1096)
T KOG1897|consen 756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL 835 (1096)
T ss_pred cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence 11111 111112222221 2234456666 77888885 3788888766521 11 11233322
Q ss_pred EEecCCcEEEEecCCeEEEeccCccceeeeec-Ccccce-e---ecCcEEEEeeCC---eEEEEeccCCcEEEEEE----
Q 002496 396 VWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAER-I---YGGTLLAMCSND---FICFYDWAECRLIRRID---- 463 (915)
Q Consensus 396 ~~s~~g~~l~~~~~~~i~v~~~~~~~~~~~~~-~~s~~~-i---~~g~~La~~~~~---~v~~~d~~~~~~i~~~~---- 463 (915)
.- -+|+++|.- +..|++|+...+..-.... -+.|.. + ..|..+++++-= ++..|+-..|..+-..+
T Consensus 836 ~~-fngkllA~I-n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p 913 (1096)
T KOG1897|consen 836 VE-FNGKLLAGI-NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP 913 (1096)
T ss_pred hh-hCCeEEEec-CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence 11 356665543 5678888755441111111 111111 1 147777777643 78888877776655443
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEEEEecH
Q 002496 464 VTVKNLYWADSGDLVAIASDTSFYILKYNR 493 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~~~~~~ 493 (915)
..++.+.+-.+..++.+-...+++++.++.
T Consensus 914 ~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 914 NWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred cceeeEEEecCceEEeecccccEEEEEecC
Confidence 256677777777777766677777776553
No 374
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.38 Score=53.98 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=74.0
Q ss_pred eecccCCHHHHHHHHHHcCChh-----HHHHHHHHHHHc---CChhhHHHHHHHcCC--cchhHHHHHhcCCHHHHHHHH
Q 002496 648 LAIQLGRLEVAQEIATEVQSES-----KWKQLGELAMST---GKLEMAEGCMKQAMD--LSGLLLLYSSLGDAEGISKLA 717 (915)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~~~~~-----~w~~la~~al~~---~~~~~A~~~y~~~~d--~~~l~~l~~~~g~~~~~~~l~ 717 (915)
-.+..+.+..|.++|+.++-+. ...+||....++ .+-+.+.+.=.|.++ ..++. ...+|
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS-----------y~~iA 514 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS-----------YAAIA 514 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee-----------HHHHH
Confidence 3456778889999998665543 557778877776 344445444444444 33322 24577
Q ss_pred HHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-chHHHHHHHHHHhhh
Q 002496 718 SLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIVAIWRKDLQ 779 (915)
Q Consensus 718 ~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~-~~~~~~~~~w~~~L~ 779 (915)
+.|...|...+|..+..+--+-.+-+.+++++++.+.|+.=|..-+. +.+-.++-.-++.+.
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~ 577 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN 577 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 77788888887777776666666667777777777777754444333 444444433333333
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.013 Score=66.96 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=102.9
Q ss_pred CCEEEEEEcCCCCeEEEEE------cCC--cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC-C-------
Q 002496 16 ERVKSVDLHPSEPWILASL------YSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-M------- 79 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-g------- 79 (915)
..+.+.++||+|+.+|... .++ .|.+++. .+.. ..+.. ....+.-.|+|+|++|++.+.. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999888765 233 4555564 2323 33322 2237888999999988877543 2
Q ss_pred ----eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEE---EECCCCeeEE----EEeecCCccEEEE
Q 002496 80 ----FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL---WDWEKGWMCT----QIFEGHSHYVMQV 148 (915)
Q Consensus 80 ----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~i~~~ 148 (915)
.+.+.++..+.... ...+.|..+.|||||.+++... +|.|.+ -....+.... .....-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 23333333322221 2245799999999999988766 477777 4434442111 1112223346789
Q ss_pred EEecCCCCEEEEEECCCcEEEE--ECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002496 149 TFNPKDTNTFASASLDRTIKIW--NLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
.|.+ ++. |+++..++...+| ++...... .+.. ...++..++-+++ -+++...++.+.+
T Consensus 503 ~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS----TVYVTDARAVLQL 564 (591)
T ss_pred eEec-CCE-EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc----eEEEEcCCceEEe
Confidence 9997 555 4555555444444 44433222 1122 2445555655432 2555555664444
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.30 E-value=0.28 Score=50.62 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=105.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe--cC---CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002496 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--AH---TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 56 ~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~---~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
...++..|.|.....-+++|. .+.| +-..+.|+.-.... .. .-...++.|..+ ...+++..|. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcCCce-EEEecCC
Confidence 456899999996666666664 4543 22223333222211 11 123567777643 3334455554 4444454
Q ss_pred CeeEEEEe--ecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 131 GWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 131 ~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
+.....+. ..-......+.... ++ .....+..|.|+.- .+.++.= .........+..+.-++++. +++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSR 164 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS---EEEEETT
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECc
Confidence 43333321 12223334444443 33 44444555665432 2334332 22334456677777777776 6777766
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEe-CCCcceeee----eecCCccEEEEEEecC
Q 002496 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH-ATTYRLENT----LNYGLERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~i~~~~~ 282 (915)
.....-||.-...-...-+.....|.++.|.|++.+.+++ ..|.|++=+ ......... +....-.+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 5556678754222222223356789999999998766654 788888876 222222111 1122234789999998
Q ss_pred CCEEEEEecCCeEEE
Q 002496 283 SRRIVIGYDEGTIMV 297 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i 297 (915)
+...++|+ .|.+..
T Consensus 244 ~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV 257 (302)
T ss_dssp S-EEEEES-TT-EEE
T ss_pred CCEEEEeC-CccEEE
Confidence 77666554 455544
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.054 Score=53.68 Aligned_cols=165 Identities=10% Similarity=0.116 Sum_probs=118.7
Q ss_pred cccCCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002496 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 11 l~~h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~ 89 (915)
+.|-...|.++.|+|+.+.|.+......-.|+=..+|+.+.++... -...-.+.|..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455566999999999998888877777777777889999887632 233467889989988888778999999887654
Q ss_pred ceeEEEe---------cC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeE--EEEeecC-------CccEEEEEE
Q 002496 90 DKVKVFE---------AH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQIFEGH-------SHYVMQVTF 150 (915)
Q Consensus 90 ~~~~~~~---------~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~i~~~~~ 150 (915)
..+..+. .+ +.....++|.|.+..|+.+-+..-+.|+.+...... ......+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 3222111 12 556889999999999999988887888776643111 1111111 134678889
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCC
Q 002496 151 NPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
++..+++++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9878889999999999888887543
No 378
>PRK10115 protease 2; Provisional
Probab=97.16 E-value=0.89 Score=53.67 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=124.3
Q ss_pred CEEEEEEcCCCCeEEEEEc-C----CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEE
Q 002496 17 RVKSVDLHPSEPWILASLY-S----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYN 85 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~vwd 85 (915)
.+..+.|||||++|+.+.. + ..|++.|+.+|..+...-... -..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4778899999999988754 2 348899998886432211111 1469999999877766442 3688888
Q ss_pred CCCC--ceeEEEecCCCCEE-EEEEcCCCCEEEEEEc---CCeEEEEECC--CCeeEEEEeecCCccEEEEEEecCCCCE
Q 002496 86 YNTM--DKVKVFEAHTDYIR-CVAVHPTLPYVLSSSD---DMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 86 ~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
+.++ +-...+........ ....+.++++++..+. ++.+.+++.. .+ .....+.........+. +. + ..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~-~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HY-Q-HR 281 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eC-C-CE
Confidence 8887 44445553333333 3334448887765443 3578888853 23 11222222222222222 32 2 33
Q ss_pred EEEEECC----CcEEEEECCCCCCceEEecC-C-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEec-CCc
Q 002496 158 FASASLD----RTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLE-GHT 229 (915)
Q Consensus 158 l~~~~~d----g~i~v~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~ 229 (915)
|...+.. ..|...++.+...-..+..+ . ..+..+.++ ++. ++++...+|.-+++-+.. +..+..+. ...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~-l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDW-LVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCE-EEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 3333332 23444455422222333333 2 357777776 332 566666677655554432 23334333 222
Q ss_pred cCeEEEEEe--CCCC-EEEEEE---cCCcEEEEeCCCcc
Q 002496 230 HNVSAVCFH--PELP-IIITGS---EDGTVRIWHATTYR 262 (915)
Q Consensus 230 ~~i~~i~~~--~~~~-~l~~~~---~dg~v~iwd~~~~~ 262 (915)
..+..+.++ +++. ++++.+ .-+.+..+|..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333444 3433 333333 23568888877654
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.14 E-value=0.038 Score=63.14 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=104.0
Q ss_pred CCEEEEEEeCCCCEEEEEe------CCC--eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC---------
Q 002496 58 LPVRSAKFVARKQWVVAGA------DDM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--------- 120 (915)
Q Consensus 58 ~~v~~l~~s~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--------- 120 (915)
..+...+.+|+|+.++... .|. .|.+++.. +.......+ ...+.-.|+|+|..|.+.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999988665 243 55555642 233222222 237889999998877776532
Q ss_pred ---CeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEE---EECCCCCCc----eEEec-CCCCee
Q 002496 121 ---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI---WNLGSPDPN----FTLDA-HQKGVN 189 (915)
Q Consensus 121 ---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v---~d~~~~~~~----~~~~~-~~~~v~ 189 (915)
+.+.+.+++.++. .. .....|..+.|+| |+..++... +|.|.+ -....+... ..+.. ....+.
T Consensus 427 ~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAV-AS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchh-hh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334443311 11 2345699999999 788777765 577777 443344311 11222 223357
Q ss_pred EEEEEeCCCcCEEEEEeCCCeEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcCCcEEE
Q 002496 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~i~~i~~~~~~~~l~~~~~dg~v~i 255 (915)
.+.|..++. |+++..++...+|.+.- |.....+.. ...++.+++-+++ .++....+|.+.+
T Consensus 501 ~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 899998876 55655554444454332 332222222 2456777777763 3555555664443
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0089 Score=68.75 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=76.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEE
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
++..++-.-.+.+++.|++.|.+-..|+.+. .+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+..+ ...+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceee
Confidence 3444444446678999999999998887642 111111233578999999999999999999999999999987 56666
Q ss_pred eecCCccEEEE---EEecCCCCEEEEEECCCcEEEEEC
Q 002496 138 FEGHSHYVMQV---TFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 138 ~~~~~~~i~~~---~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
+..|..+.+.+ .+.. ++..+.++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 66565554444 3333 4556777777776 5654
No 381
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.035 Score=63.65 Aligned_cols=218 Identities=8% Similarity=0.036 Sum_probs=104.9
Q ss_pred cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceeEEEecCCCCEEEEEEcCCC
Q 002496 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
.+..||..+++....-.............-++...++|+.+ ..+..||..+......-.-....-......-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 57788887765332111111111111222366777777753 357788887765422111111111111122256
Q ss_pred CEEEEEEcCC-----eEEEEECCCC-eeEEEEeecCCccEEEEEEecCCCCEEEEEECCC--------------------
Q 002496 112 PYVLSSSDDM-----LIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-------------------- 165 (915)
Q Consensus 112 ~~l~~~~~dg-----~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-------------------- 165 (915)
...+.|+.++ .+..||..++ |.....+.........+.. ++.+.++|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccccc
Confidence 6667777653 4788998865 2211111111111112222 577888887653
Q ss_pred ---cEEEEECCCCCCceEEecCCCCe-eEEEEEeCCCcCEEEEEeCC------CeEEEEECCC-CcE--EEEecCCccCe
Q 002496 166 ---TIKIWNLGSPDPNFTLDAHQKGV-NCVDYFTGGDKPYLITGSDD------HTAKVWDYQT-KSC--VQTLEGHTHNV 232 (915)
Q Consensus 166 ---~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~~i 232 (915)
++..||..+.+-...-.-..... .+++ .-++. +.+.|+.+ ..+..||..+ .+- +..+.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~--IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD--IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE--EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 46678876653211111001111 1222 22333 55666543 2467899886 442 23332222222
Q ss_pred EEEEEeCCCCEEEEEEcCC--cEEEEeCCCcce
Q 002496 233 SAVCFHPELPIIITGSEDG--TVRIWHATTYRL 263 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~~ 263 (915)
..+.+ ++++.++||.+| .+-.||..+.+-
T Consensus 507 ~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 507 HTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 22222 667888999888 677777766553
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0039 Score=71.49 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCcEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002496 26 SEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
.+.+++.|+..|.|...|... .+. ..-....++|++++|+.+|..++.|-.+|.|.+||..+++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 356789999999999988644 222 11222467999999999999999999999999999999999888876655444
Q ss_pred E---EEEcCCCCEEEEEEcCCeEEEEEC
Q 002496 104 C---VAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 104 ~---l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+ +.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3 445556667888777775 5553
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.10 E-value=0.16 Score=48.37 Aligned_cols=215 Identities=12% Similarity=0.157 Sum_probs=114.5
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEE-eCCCeEEEEECC--CCceeEEEe-----
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAG-ADDMFIRVYNYN--TMDKVKVFE----- 96 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~-~~dg~i~vwd~~--~~~~~~~~~----- 96 (915)
+.++.+--..|.|+-||+.+.+..+. +....++.++.+--.+ +.++++ +..-.|.-||.. .-....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34555555678888899877544332 2122223334442222 223333 333344456622 222223311
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc---------CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcE
Q 002496 97 AHTDYIRCVAVHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
........-..+|+|++..-.-. .|.++.|-.... +...+ ..-.--..++|+.+...+.++-+.+-+|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee-hhccCCccccccccCcEEEEEccCceEE
Confidence 11345666778999988442222 234444433322 11111 1112235678886334455566667778
Q ss_pred EEEE--CCCCC-----CceEEec----CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002496 168 KIWN--LGSPD-----PNFTLDA----HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 168 ~v~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~ 236 (915)
.-|| ..++. .+..++. .......+++...| .+.++....++|...|..+|+.+.++.-....|+++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7777 44432 2222221 11112334443344 4788888899999999999999999998889999999
Q ss_pred EeCC-CCEEEEE
Q 002496 237 FHPE-LPIIITG 247 (915)
Q Consensus 237 ~~~~-~~~l~~~ 247 (915)
|-.. -..+.+.
T Consensus 261 FgGkn~d~~yvT 272 (310)
T KOG4499|consen 261 FGGKNLDILYVT 272 (310)
T ss_pred ecCCCccEEEEE
Confidence 9653 3344443
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.34 Score=47.75 Aligned_cols=242 Identities=15% Similarity=0.168 Sum_probs=137.0
Q ss_pred CCceeEEEEecCCCEEEEEEeCCCCE-EEEEeCCC-eEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEEEEEc--
Q 002496 46 SQTMAKSFEVTELPVRSAKFVARKQW-VVAGADDM-FIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVLSSSD-- 119 (915)
Q Consensus 46 ~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~~~~~-- 119 (915)
.|+.+.... -......++|+|.... ++.+-.-| ...++|.++.+....+....+. .-.-.|||||.+|...-.
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 344444333 2233456777876543 44444444 4668899888777666543332 223579999998886643
Q ss_pred ---CCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEE--------ECCCCCCceEE-------
Q 002496 120 ---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW--------NLGSPDPNFTL------- 181 (915)
Q Consensus 120 ---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~--------d~~~~~~~~~~------- 181 (915)
-|.|-+||.+.+....-.+..|.-....+.|.+ |+.+++.+. |-|..- ++.+.++...+
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccc
Confidence 388999999977566666777776677888998 888888765 333322 22222322222
Q ss_pred -------e--cCCCCeeEEEEEeCCCcCEEEEEeC-CCe-----EEEEECCCCcEEEEecC-------CccCeEEEEEeC
Q 002496 182 -------D--AHQKGVNCVDYFTGGDKPYLITGSD-DHT-----AKVWDYQTKSCVQTLEG-------HTHNVSAVCFHP 239 (915)
Q Consensus 182 -------~--~~~~~v~~~~~~~~~~~~~l~~~~~-dg~-----i~iwd~~~~~~~~~~~~-------~~~~i~~i~~~~ 239 (915)
. .+...+..++.-+++. +..|+. .|. -.+=-...++++.-+.. ....|-+|+.+.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgt---vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGT---VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCc---EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 1 2233455555555553 333332 110 00111122333333321 234577888887
Q ss_pred CCCEEEEEEc-CCcEEEEeCCCcceeeeeecCCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
+..+++..+- .+...+||..+|..+....... +.-.-+...-+++.+.+|.+.+.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEEecccccc----cccceeccCceEEecCCceEEec
Confidence 6666665554 4567899999999776543321 12223344457777777877764
No 385
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.063 Score=45.25 Aligned_cols=102 Identities=20% Similarity=0.378 Sum_probs=69.8
Q ss_pred eeEEEEEe---CCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee
Q 002496 188 VNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 188 v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
|++++++. +|. +-|++|+.|..|++|+- ...+..+. -...|++++-... ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 45666554 332 37999999999999983 46667766 3456788877776 56888899999999984 2334
Q ss_pred eeeecCCccEEEEEEecCC----CEEEEEecCCeEEE
Q 002496 265 NTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMV 297 (915)
Q Consensus 265 ~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~v~i 297 (915)
+..+.. ..+.++.+..-. .-|++|-.+|.+-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 346666655432 36888988888754
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.09 E-value=0.6 Score=50.57 Aligned_cols=270 Identities=14% Similarity=0.168 Sum_probs=146.5
Q ss_pred CCeEEEEEcCCcEEEEECCCCc-----eeEEEEecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCC--Cc----
Q 002496 27 EPWILASLYSGTVCIWNYQSQT-----MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNT--MD---- 90 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~vwd~~~--~~---- 90 (915)
...|++|+.+|.++||+...+. ++-+. .-..||..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3589999999999999975543 11111 1456777776542 2234444 4556788887621 11
Q ss_pred ---eeEEEecCC--CCEEEEEEcC----C-CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 91 ---KVKVFEAHT--DYIRCVAVHP----T-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 91 ---~~~~~~~~~--~~i~~l~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
.+..+..|. .....+++-| . ..+|++-+-||.+.+++-+.- .....+.. ---...+.|.| ..+.|++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~-~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCP-RTDSFVT 191 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEee-cCCEEEE
Confidence 122222232 2233344333 2 357888999999999997764 33333333 22234567888 7788999
Q ss_pred EECCCcEEEEECCC--------------------CC---CceEEecCCCCeeEEEEEeC-CCcCEEEEEeCCCeEEEEEC
Q 002496 161 ASLDRTIKIWNLGS--------------------PD---PNFTLDAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 161 ~~~dg~i~v~d~~~--------------------~~---~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~ 216 (915)
++.+..+..|.... ++ +..++.. ...+..+..... +....+++-+ ...+.+.+-
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~ 269 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD 269 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcC
Confidence 99888888886421 00 1112221 122333333222 1222344433 345666664
Q ss_pred CCCcEEEEecCCccCeEEEE-EeC----CC---CEEEEEEcCCcEEEEeCCCcceeeeeecCCccE--EEEEEecCCCEE
Q 002496 217 QTKSCVQTLEGHTHNVSAVC-FHP----EL---PIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSRRI 286 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~~i~-~~~----~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l 286 (915)
+|......+- .....+++ +.. ++ ..+++++.++++.||.- .++.+.-+....+| .-..+..-...|
T Consensus 270 -~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~I 345 (418)
T PF14727_consen 270 -NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLI 345 (418)
T ss_pred -CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceE
Confidence 4544333332 22222222 211 22 24888899999999963 34555544443333 222233335678
Q ss_pred EEEecCCeEEE-ecCCCcceeE
Q 002496 287 VIGYDEGTIMV-KIGREEPVAS 307 (915)
Q Consensus 287 ~~~~~dg~v~i-~~~~~~~~~~ 307 (915)
++-+++|.+.+ ++|.+++...
T Consensus 346 V~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred EEEcCCCcEEEEEeCCCCcccc
Confidence 88888999888 5677665443
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.09 E-value=0.25 Score=49.22 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCeEEEEEcCC--cEEEEECCCCceeEEEEecCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002496 18 VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 94 (915)
...+.|..+|.++-+.+.-| .|+.+|+.+|+.......... ---.++.. +++.....-.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45677767777666666544 699999999988776654321 11233333 333444556789999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec--CC---ccEEEEEEecCCCCEEEEEECCCcEEE
Q 002496 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG--HS---HYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (915)
+.- .+.=+.++ .+++.|+.+.....|.++|..+... ...+.. .. ..+.-+.|. ++...|-.-....|..
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence 864 34556676 4567788777778999999887533 222221 12 235556776 4666666656667777
Q ss_pred EECCCCCCceEEe---------------cCCCCeeEEEEEeCCCcCEEEEEe
Q 002496 170 WNLGSPDPNFTLD---------------AHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 170 ~d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.|..+|+....+. ....-.+.|+|.|..+. ++++|-
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTGK 250 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEET
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEeC
Confidence 8888877655442 01345789999988775 666663
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.07 E-value=0.041 Score=46.34 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=68.9
Q ss_pred EEEEEEec---CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcE
Q 002496 145 VMQVTFNP---KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 145 i~~~~~~p---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
|+++++.. ++.+.|++|+.|..|++|+- ...+..+. ....|.+++-...+ .++.+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--cce
Confidence 45555543 34578999999999999974 34555555 34566777666554 5999999999999984 445
Q ss_pred EEEecCCccCeEEEEEeC-CC---CEEEEEEcCCcEE
Q 002496 222 VQTLEGHTHNVSAVCFHP-EL---PIIITGSEDGTVR 254 (915)
Q Consensus 222 ~~~~~~~~~~i~~i~~~~-~~---~~l~~~~~dg~v~ 254 (915)
+...+.... ++++.+.. ++ +-|++|-.+|.|-
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555554433 55655443 33 3788898888774
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.00083 Score=63.40 Aligned_cols=141 Identities=10% Similarity=0.084 Sum_probs=78.7
Q ss_pred EEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce-EEecCCCCeeEEE
Q 002496 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVD 192 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~ 192 (915)
+...+.||.|.-++++......+.-.-+. +..--+..+..+++|+.+|.|.+|......... ........+.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44556677777777664322111111121 111112246789999999999999876322111 1111222333322
Q ss_pred EEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEE--EcCCcEEEEeCC
Q 002496 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITG--SEDGTVRIWHAT 259 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~~~~~~~~l~~~--~~dg~v~iwd~~ 259 (915)
-. .....+.++++.+|.|+.|+...++.+-....|. .++.....+..+.++... |.|..++.|++.
T Consensus 109 p~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11 1122378899999999999998887777666666 444444444444555555 555556666554
No 390
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.02 E-value=0.63 Score=49.49 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=96.0
Q ss_pred CCCEEEEEe-CCCeEEEEECCCC----ceeEEEec---CC----CCEEEEEEcCCCCEEEEEEc------CCeEEEEECC
Q 002496 68 RKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEA---HT----DYIRCVAVHPTLPYVLSSSD------DMLIKLWDWE 129 (915)
Q Consensus 68 ~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~---~~----~~i~~l~~s~~~~~l~~~~~------dg~i~iwd~~ 129 (915)
+.++|+..+ .++.|.|+|+.+. +..+++.. +. .....+-.-|+|+.++++-. .|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6889999998743 33444442 11 22344555678888887633 3668888877
Q ss_pred CCeeEEEEeec---CCccEEEEEEecCCCCEEEEEEC--------------------CCcEEEEECCCCCCceEEecCCC
Q 002496 130 KGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASL--------------------DRTIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 130 ~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~--------------------dg~i~v~d~~~~~~~~~~~~~~~ 186 (915)
+. .+...... ....-..+-|.| ..+.++++.. ..++.+||+.+.+.++++.-...
T Consensus 166 tf-~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TF-EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc-cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 65 34443332 233456778888 7788887654 35799999999999888875443
Q ss_pred --CeeEEEEEeCCCcCEEEEEe-CCCeEEEEEC-CCCc----EEEEecCC-----------------ccCeEEEEEeCCC
Q 002496 187 --GVNCVDYFTGGDKPYLITGS-DDHTAKVWDY-QTKS----CVQTLEGH-----------------THNVSAVCFHPEL 241 (915)
Q Consensus 187 --~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~i~~i~~~~~~ 241 (915)
-+..+.|..+....+=++|+ -..+|..|-- ..++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 35578887776655544433 3344444432 3332 12222110 2347899999999
Q ss_pred CEEEEEE-cCCcEEEEeCCCc
Q 002496 242 PIIITGS-EDGTVRIWHATTY 261 (915)
Q Consensus 242 ~~l~~~~-~dg~v~iwd~~~~ 261 (915)
++|..++ ..|.|+.||++..
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 9887665 6899999998764
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.17 Score=50.38 Aligned_cols=169 Identities=9% Similarity=0.065 Sum_probs=113.1
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCe
Q 002496 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 54 ~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -.....|.+..+|++.++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 444556999999999999999988888888887889999887621 2235568888888888888888888888776542
Q ss_pred eEEE---------EeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE---ec-------CCCCeeEEEE
Q 002496 133 MCTQ---------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DA-------HQKGVNCVDY 193 (915)
Q Consensus 133 ~~~~---------~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~-------~~~~v~~~~~ 193 (915)
.... ...+.+...-.++|.| ....|..+-+-.-+.||........... .. .-..|.++.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2211 1112255678899999 6667777777777777766533211111 01 1124566777
Q ss_pred EeCCCcCEEEEEeCCCeEEEEECCCCcEEEEe
Q 002496 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (915)
.+..+. +++-+..++.+.-.|.. |..+..+
T Consensus 241 ~~~~~~-LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNS-LLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCc-EEEEecCCceEEEEecC-CCeeeeE
Confidence 765543 67777778888888865 5544443
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.13 Score=50.46 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=132.3
Q ss_pred EEEEEecCCCCEEEEEECCCc-EEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEEEeCC-----CeEEEEECC
Q 002496 146 MQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQ 217 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 217 (915)
..++++|..+..++.+-.-|+ ..++|.++.+...++...+.. .-.-.|+|+|. +|...-.| |.|-+||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc
Confidence 357788867777777777776 467898887766665433322 12345888887 56554333 789999987
Q ss_pred CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEc------------------CCcEEEEeCCCcceeeeeec----CCccE
Q 002496 218 TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSE------------------DGTVRIWHATTYRLENTLNY----GLERV 274 (915)
Q Consensus 218 ~~-~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~~----~~~~v 274 (915)
.+ +.+-.+..|.-....+.+.+||+.++.+.. .-++.+.|..+|.++..... +.-.+
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 53 356677777777788999999998887532 11234444455554433222 22345
Q ss_pred EEEEEecCCCEEEEEecCCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeeeecCCccc
Q 002496 275 WAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL 354 (915)
Q Consensus 275 ~~i~~~~~~~~l~~~~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 354 (915)
..++..+||..++.+-..|.- ...++++.+...|+-+ ..+. ++-........
T Consensus 229 RHld~g~dgtvwfgcQy~G~~----~d~ppLvg~~~~g~~l-------~~~~-----------------~pee~~~~~an 280 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPR----NDLPPLVGHFRKGEPL-------EFLD-----------------LPEEQTAAFAN 280 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCC----ccCCcceeeccCCCcC-------cccC-----------------CCHHHHHHHHh
Confidence 566666665544332221110 1112222222111111 1110 11111112234
Q ss_pred CCceEEECCCCCEEEEEc--CCcEEEEEeecccccCccceeEEEE-e-cCCcEEEEecCCeEEEec
Q 002496 355 YPQSLKHNPNGRFVVVCG--DGEYIIYTALAWRNRSFGSALEFVW-S-SDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 355 ~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~~~~~~~~~~~~~~-s-~~g~~l~~~~~~~i~v~~ 416 (915)
++-+|+.+.+..+++..+ .+.+.+|+..+........+.+.+- . ..+-++++...|.+..++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence 677888888878887777 5678888877665443333222211 1 123455555567776653
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.98 E-value=0.36 Score=52.69 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=92.2
Q ss_pred cCCCCEEEEEEcCCCCeEEEEE--cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEC
Q 002496 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 13 ~h~~~V~~v~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~----~~~l~~~~~dg~i~vwd~ 86 (915)
.--.+|..++|..-.+.+++.. .+|.+++=| ...+..|+ .|..+.|.|- ...+++......|.||-+
T Consensus 17 qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 17 QAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3345788899975444555554 356555433 23333333 5889999985 345666678889999987
Q ss_pred C-----CCceeEEEecCC-----CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCC
Q 002496 87 N-----TMDKVKVFEAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 87 ~-----~~~~~~~~~~~~-----~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (915)
. +++.+..-..+- --...+.|+|....|++-.....=.+.++.......+.-....+.|.|.+|.+ ||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCC
Confidence 5 222222211111 11246789999988776665544455666543233333335668899999999 666
Q ss_pred EEEEEE-CCCcEEEEECC
Q 002496 157 TFASAS-LDRTIKIWNLG 173 (915)
Q Consensus 157 ~l~~~~-~dg~i~v~d~~ 173 (915)
.|+++- ..=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 666553 33446788853
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.24 Score=51.55 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=128.2
Q ss_pred EEeCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEee---
Q 002496 64 KFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--- 139 (915)
Q Consensus 64 ~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 139 (915)
.|.++...|+-. -..+.|.-|+..+++. ..+.. .+.+.++..-..+..|+++.. .+.+++.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 567777755444 4577899998876543 33332 333455544444445555543 256677665523122111
Q ss_pred c-CCccEEEEEEecCCCCEEEEEEC-----------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeC
Q 002496 140 G-HSHYVMQVTFNPKDTNTFASASL-----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 140 ~-~~~~i~~~~~~p~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
+ .......+...| ++.+.++... -|.|+.+|. .+.....+..+-..-+.++|+|+++. ++++=+.
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE-EEEEeCC
Confidence 1 123455677777 5555444322 133444443 44445555554566689999999973 4444445
Q ss_pred CCeEEEEECCC--C----cE-EEEecCCccCeEEEEEeCCCCEEEEEEcCC-cEEEEeCCCcceeeeeecCCccEEEEEE
Q 002496 208 DHTAKVWDYQT--K----SC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 208 dg~i~iwd~~~--~----~~-~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
.+.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+.+++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 58888887752 1 11 222223345566788888888775555454 89999977 9999988888777788887
Q ss_pred ec-CCCEEEEEe
Q 002496 280 MK-SSRRIVIGY 290 (915)
Q Consensus 280 ~~-~~~~l~~~~ 290 (915)
-- +.+.|.+.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 54 345555444
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.029 Score=59.61 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=99.4
Q ss_pred CCCEEE-EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCE-----EEEEeCCCeEEEEECCCC-c-EEEEe
Q 002496 154 DTNTFA-SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-----LITGSDDHTAKVWDYQTK-S-CVQTL 225 (915)
Q Consensus 154 ~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~-~-~~~~~ 225 (915)
+.++++ .+.....++-.|+..|+.+.....+.. |+-+.+.|+.+... -++|-++..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 455556788889999998888876655 78888888765322 355777889999998732 2 22222
Q ss_pred cCC----ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCccee-eeeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 226 EGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 226 ~~~----~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
++| .....|++-..+| +|++||.+|.||+||- .++.- ..+.+-..+|..+..+.+|++|+..+..-.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 222 2346677777666 8999999999999996 55543 445555678999999999999988877666555
No 396
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.91 E-value=0.0029 Score=42.08 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=34.3
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002496 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd 85 (915)
++....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.0031 Score=41.97 Aligned_cols=39 Identities=41% Similarity=0.609 Sum_probs=34.2
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002496 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++....+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 398
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.89 E-value=0.022 Score=65.92 Aligned_cols=135 Identities=12% Similarity=0.167 Sum_probs=92.3
Q ss_pred cCCeEEEEECCCCeeEEEEeecCCcc-EEEEEEec----CCCCEEEEEECCCcEEEEECCCCCC-ceEEe----cCCCCe
Q 002496 119 DDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDP-NFTLD----AHQKGV 188 (915)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p----~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~----~~~~~v 188 (915)
....|+-.|++.| +++..+..|... |..++-.. -.+..-++|-.+..+..||.+-... +..-. ......
T Consensus 502 ~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 4577899999999 666666665533 55543221 1234566777889999999976431 11111 233456
Q ss_pred eEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002496 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
.|++-+.+| +|++|+.+|.||+||--..+....+.+...+|..|..+.||++|++.+ +..|.+++.
T Consensus 581 s~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 677665555 699999999999999433333445567788999999999999998877 457777774
No 399
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.00034 Score=72.88 Aligned_cols=128 Identities=15% Similarity=0.013 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002496 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
.+.|+..+..|....+...| +++|+..||..++--+..+-..++.+..-+.++-.+-.||+|.+.+.
T Consensus 3 ~~~~~~~~~~a~~d~~~~~a-------------iriyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l 69 (615)
T KOG2247|consen 3 LKVIPCTLTKAQEDFKCVSA-------------IRIYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL 69 (615)
T ss_pred ccchhhHHHhhhhhccchHH-------------HHHHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceec
Confidence 35799999999999999999 77788888877777776666777777666677778899999999999
Q ss_pred HCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCcc
Q 002496 748 ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAED 824 (915)
Q Consensus 748 ~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 824 (915)
+.+++-+|+.|+|+. . |...+. +|+.-. |..-|-+-.+|++++|.-|.+..+..+|++.-.
T Consensus 70 e~n~tg~aldm~wDk-e---------gdvlav-----lAek~~-piylwd~n~eytqqLE~gg~~s~sll~wsKg~~ 130 (615)
T KOG2247|consen 70 ELNPTGKALDMAWDK-E---------GDVLAV-----LAEKTG-PIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTP 130 (615)
T ss_pred ccCCchhHhhhhhcc-c---------cchhhh-----hhhcCC-CeeechhhhhhHHHHhccCcchHHHHhhccCCc
Confidence 999999999999997 3 555544 444443 777777778888888888777777666655433
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.083 Score=60.45 Aligned_cols=228 Identities=13% Similarity=0.090 Sum_probs=117.8
Q ss_pred CCCCeEEEEEcC------CcEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCce
Q 002496 25 PSEPWILASLYS------GTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDK 91 (915)
Q Consensus 25 p~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~~d------g~i~vwd~~~~~~ 91 (915)
..+..+++|+.. ..+..||..++......... ...-.+++.. ++...++|+.| ..+..||..+.+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345667777776 35889998887444332222 2223334433 56778888888 3677888877765
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEECCCC-eeEEEEeecCCccEEEEEEecCCCCEEEEEECCC
Q 002496 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
...-.-.......-.-.-+|...++|+.|| ++-.||..+. |.............-.+.+ ++.+.++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCC
Confidence 442211111111111122577778888885 4777887765 1222111111111222222 678888888654
Q ss_pred ------cEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEeCCC-----eEEEEECCCCcEEEEecCCccCe
Q 002496 166 ------TIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 166 ------~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i 232 (915)
++..||..+++-.. .+....... .++.. ++. +.++|+.++ +|..||..+.+.... .....+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~--iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~r 513 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK--IYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPR 513 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE--EEEECCccCCCccceEEEEcCCCCceeEc-ccCcccc
Confidence 46778877654222 111111111 22222 333 677777665 377788876654332 1111222
Q ss_pred EEEEE-eCCCCEEEEEEcCCc-----EEEEeCCCc
Q 002496 233 SAVCF-HPELPIIITGSEDGT-----VRIWHATTY 261 (915)
Q Consensus 233 ~~i~~-~~~~~~l~~~~~dg~-----v~iwd~~~~ 261 (915)
..+.. .-++...++|+.||. |..||..+.
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 22211 224567777877764 555655443
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=96.76 E-value=1 Score=48.00 Aligned_cols=226 Identities=11% Similarity=0.041 Sum_probs=109.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..++.++.|.....-+++|. +|.| |.. +.|+.-.... ....++.++.|.++ ..+++ +..|.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666677765 4543 332 2232222111 11234677888754 33443 455544332 2222
Q ss_pred eeEEEEee--cCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEeCC
Q 002496 132 WMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 132 ~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
........ ........+.... .+..+ .++..|.|..-+ +.++.=..+ ......+..+.+.+++. ++..+..
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~-~~~~~-~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~---~v~~g~~ 192 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALG-PGTAE-MATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK---YVAVSSR 192 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEEC-CCcce-eeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe---EEEEeCC
Confidence 22222111 1111112222221 22333 344455553322 233322222 22345678888887654 4455555
Q ss_pred CeEEE-EECCCCcEEE-EecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec----CCccEEEEEEecC
Q 002496 209 HTAKV-WDYQTKSCVQ-TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKS 282 (915)
Q Consensus 209 g~i~i-wd~~~~~~~~-~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~ 282 (915)
|.+.. +| ..++.-. ........++++.+.++++.++++ ..|.+++=....|..-..... ....+.++.+.++
T Consensus 193 G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 193 GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 65543 22 1222222 222345678999999999877765 467665423344443222221 1235778889887
Q ss_pred CCEEEEEecCCeEEE
Q 002496 283 SRRIVIGYDEGTIMV 297 (915)
Q Consensus 283 ~~~l~~~~~dg~v~i 297 (915)
+..++ ++.+|.+..
T Consensus 271 ~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 271 GEIWA-GGGNGTLLV 284 (334)
T ss_pred CCEEE-EcCCCeEEE
Confidence 76554 445665554
No 402
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.75 E-value=0.0024 Score=66.72 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=71.9
Q ss_pred eeecccCCHHHHHHHHHH-------cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHH
Q 002496 647 ELAIQLGRLEVAQEIATE-------VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAE 711 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~-------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~ 711 (915)
.++...++++++.++... -.++..|..+|..+...|+.+.|+++|.++-.. ..++.++...|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 556788999998888765 235678999999999999999999999987422 23344555567766
Q ss_pred HHHHHHHHHHHc----CCchH-HHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcChhhh
Q 002496 712 GISKLASLAKEQ----GKNNV-AFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAA 786 (915)
Q Consensus 712 ~~~~l~~~~~~~----~~~~~-a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a 786 (915)
.+..+.+..... ..... -+.+++.+|++++|+.+|.+.- ...|
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----------~~~p---------------------- 245 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL----------KLNP---------------------- 245 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH----------HHST----------------------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc----------cccc----------------------
Confidence 544433333222 22222 2344555666666666665421 1111
Q ss_pred hhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCC
Q 002496 787 ESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPA 822 (915)
Q Consensus 787 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 822 (915)
..|.....|+.++...|..++|...+..|
T Consensus 246 -------~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 -------DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -------T-HHHHHHHHHHHT---------------
T ss_pred -------ccccccccccccccccccccccccccccc
Confidence 23344456777777777777777666554
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.75 E-value=1.2 Score=48.74 Aligned_cols=149 Identities=12% Similarity=0.126 Sum_probs=82.9
Q ss_pred CCEEEEEEcCCCCEE-EEEE--cCCeEEEEECCCCeeEEEEeecCCccEEEEEEecC---CCCEEEEEECCCcEEEEECC
Q 002496 100 DYIRCVAVHPTLPYV-LSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK---DTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~---~~~~l~~~~~dg~i~v~d~~ 173 (915)
.++..++|. ||+.+ ++.- .+|.+++-|- ... +.-..|..+.|.|- +...+........|.+|.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 368889998 45544 4432 3444444331 112 22234888999882 23234444557889999885
Q ss_pred C-----CCCceEEec-----CCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCC
Q 002496 174 S-----PDPNFTLDA-----HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 174 ~-----~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~i~~~~~~~ 242 (915)
- ++....-.. ..--...+.|+|... +|++-.....-.+++++.. ..++.--...+-|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~--iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA--ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc--eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 2 222111111 111224678999876 5555544444345565532 23332223567799999999999
Q ss_pred EEEEEE-cCCcEEEEeCC
Q 002496 243 IIITGS-EDGTVRIWHAT 259 (915)
Q Consensus 243 ~l~~~~-~dg~v~iwd~~ 259 (915)
.|+++- ..=.-+|||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 776653 23346788844
No 404
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.18 Score=54.55 Aligned_cols=272 Identities=8% Similarity=-0.024 Sum_probs=143.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
..+|.++.+...|. +.+|+.+| +..||..+++..+.-.... .+|..+.-+-.| .+.+|+.+| |.+.+....+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 35678888888775 77777777 6778888887766544333 566666655555 477888877 6666655422211
Q ss_pred EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCC--ccEEEEEEecCCCCEEEEEECCCcEEEE
Q 002496 94 VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 94 ~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg~i~v~ 170 (915)
... -....|..+.-..+| .+-.|+.+|..+. ..............|. +.|.++..+ ....+.+++.+|.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D--~dGsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLD--TDGSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeec--cCCCEeeeccCceEEEe
Confidence 111 123345544444444 5677777775433 3332212222222222 223344333 34457777777665554
Q ss_pred ECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC-CccCeEEEEEeCCCCEEEEEE
Q 002496 171 NLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~ 248 (915)
+- .-.....+...++. +..++..|......+-...+-|.+.+-+-.+|..+.+... ....|+.+++..+| .+-.|+
T Consensus 316 ~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TA-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cc-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 32 11221222222121 1122222211111122233334455555556665554322 23567778888755 455666
Q ss_pred cCCcEEEEeCCC-cceeeeee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002496 249 EDGTVRIWHATT-YRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
...-+..|+..+ +-...... ...++|..+.-.|+++ |.+|+.+|.+..
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 664466677665 32222222 2346788888888887 888999988876
No 405
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.026 Score=64.51 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=83.8
Q ss_pred ccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc---hhHHHHHhcCCHHHHHH------------
Q 002496 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS---GLLLLYSSLGDAEGISK------------ 715 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~---~l~~l~~~~g~~~~~~~------------ 715 (915)
..++++.|+++|.+.+.+..|.+||.+-++.+.+..|.+.|.|+.|-. .++.+....|..+.+.+
T Consensus 1087 ~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 578899999999999999999999999999999999999999998653 44455555555554322
Q ss_pred ---------------------------------HHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002496 716 ---------------------------------LASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 716 ---------------------------------l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
++..+..++.+..|..+|....++.+-..-++..|.+.-|..-||+-
T Consensus 1167 ~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1167 YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 23333455556666666666666666666677777777777777765
Q ss_pred C
Q 002496 763 L 763 (915)
Q Consensus 763 ~ 763 (915)
.
T Consensus 1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred c
Confidence 4
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.65 E-value=0.63 Score=54.91 Aligned_cols=230 Identities=10% Similarity=0.048 Sum_probs=124.6
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEEecCC--------CEEEEEEeC----------------CCCEEEEEeCCCeEE
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--------PVRSAKFVA----------------RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~l~~s~----------------~~~~l~~~~~dg~i~ 82 (915)
+..|.+++.++.|.-.|..+|+.+..+..... .++.+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677778889999999999998888764321 122333321 344788999999999
Q ss_pred EEECCCCceeEEEecCCCCEE-------------EEEEcC--CCCEEEEEEc----------CCeEEEEECCCCeeEEEE
Q 002496 83 VYNYNTMDKVKVFEAHTDYIR-------------CVAVHP--TLPYVLSSSD----------DMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~-------------~l~~s~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 137 (915)
-.|.+||+....+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 111112 1345666643 688999999999443333
Q ss_pred eecCCccEEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEEC
Q 002496 138 FEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
..+.... ... .+ .+.....++.+. ...-+|.+.+... .-.+.. +..+..... ........+.|.-.|.
T Consensus 353 ~~g~p~~-~~~--~~-~g~~~~~gg~n~W~~~s~D~~~glvy-~ptGn~----~pd~~g~~r--~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 353 DPGNPDP-TAP--PA-PGETYTRNTPNSWSVASYDEKLGLVY-LPMGNQ----TPDQWGGDR--TPADEKYSSSLVALDA 421 (764)
T ss_pred ecCCCCc-ccC--CC-CCCEeccCCCCccCceEEcCCCCeEE-EeCCCc----cccccCCcc--ccCcccccceEEEEeC
Confidence 2221110 100 01 222222222111 1222333222111 000110 011110000 0001122456777888
Q ss_pred CCCcEEEEecCCccCeE---------EEEEeC-CCC---EEEEEEcCCcEEEEeCCCcceeeeee
Q 002496 217 QTKSCVQTLEGHTHNVS---------AVCFHP-ELP---IIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~i~---------~i~~~~-~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
+||+....++...+.++ -+.+.. +|+ .++.++.+|.+.++|..+|+.+....
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88888877765222111 122332 553 88999999999999999999876554
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.63 E-value=0.5 Score=51.05 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=54.6
Q ss_pred CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC-eeEEEEEeCCC----------------cCEEEE
Q 002496 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGD----------------KPYLIT 204 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~----------------~~~l~~ 204 (915)
...+.+++.+| ++++.++...-|.|.++|+.++..++.+++-... +.-+.....+. .-+++-
T Consensus 307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34578899999 7888888888899999999988776665543321 11111111111 002333
Q ss_pred EeCCCeEEEEECCCCcEEEEec
Q 002496 205 GSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 4567889999999888777665
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.62 E-value=0.71 Score=49.12 Aligned_cols=211 Identities=15% Similarity=0.230 Sum_probs=94.3
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----CCceEEec---C----CCCeeEEEEEeCCCcCEEEEEeC------CCeEEEEE
Q 002496 154 DTNTFASAS-LDRTIKIWNLGSP----DPNFTLDA---H----QKGVNCVDYFTGGDKPYLITGSD------DHTAKVWD 215 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~v~d~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd 215 (915)
+.++|+..+ .++.|+++|+.+. +..+.+.. + -.....+..-|+|+ +++++-. -|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 456666666 6788999998743 22233321 1 12223444455565 5666422 35688888
Q ss_pred CCCCcEEEEecCCcc---CeEEEEEeCCCCEEEEEEc--------------------CCcEEEEeCCCcceeeeeecCCc
Q 002496 216 YQTKSCVQTLEGHTH---NVSAVCFHPELPIIITGSE--------------------DGTVRIWHATTYRLENTLNYGLE 272 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~---~i~~i~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~ 272 (915)
-.+.+.......... --..+.|.|..+.++|... ..++.+||+.+.+.++++.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 887777666654322 2456788898888887542 35799999999999999987754
Q ss_pred c--EEEEEEec--CCCEEEEEec-CCeEEEecCCCcceeEecCCCcEEEEeeCceEEEEeeecccceeccCCceeeeeee
Q 002496 273 R--VWAIGYMK--SSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (915)
Q Consensus 273 ~--v~~i~~~~--~~~~l~~~~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (915)
. ...+.|.. +..+-.+|+. .+.|..|-. +.+|. |....- +.+... -.++-.++..++
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k--------~~~g~--W~a~kV---i~ip~~-----~v~~~~lp~ml~ 305 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK--------DDDGE--WAAEKV---IDIPAK-----KVEGWILPEMLK 305 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---------ETTE--EEEEEE---EEE--E-----E--SS---GGGG
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEE--------cCCCC--eeeeEE---EECCCc-----ccCccccccccc
Confidence 3 44555544 4455444443 223332211 01222 221111 111110 011111221122
Q ss_pred ecCCcccCCceEEECCCCCEEEEEc--CCcEEEEEeecc
Q 002496 348 ELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAW 384 (915)
Q Consensus 348 ~~~~~~~~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~ 384 (915)
.++....-++.|.+|.|.++|-+++ .|.+..|++...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2233344678999999999998887 999999988764
No 409
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.00043 Score=72.17 Aligned_cols=279 Identities=9% Similarity=0.062 Sum_probs=163.9
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~ 92 (915)
|-.......|-|.+.-+++++.+..|..|| +.++...... .++....++|..++..+++. -..+.+.+|++++....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444556678889888799999899999999 5555554444 44556778999888776654 45789999999764322
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc------
Q 002496 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT------ 166 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~------ 166 (915)
..-.+....-.-+.|++.++.++.+...|.+.+++..+. ........|..++++++|.+ .++.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTTQ 187 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhhh
Confidence 111111222233789999999999999999999998776 33334455889999999998 445555554433
Q ss_pred ----EEEEECCC---------------------------C--------------CCceEEecCCCCeeEEEEEeCCCcCE
Q 002496 167 ----IKIWNLGS---------------------------P--------------DPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 167 ----i~v~d~~~---------------------------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
+..+.... + ..-..++...+.+.|+.|.-+|.
T Consensus 188 egeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~--- 264 (615)
T KOG2247|consen 188 EGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY--- 264 (615)
T ss_pred ccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc---
Confidence 23332211 0 00113333445566777776663
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEe---cCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcce--eeeeecCCccEEE
Q 002496 202 LITGSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWA 276 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~ 276 (915)
|..+.+-|.|..-+..+++....+ ..+.+.+.+++.|..-+.+++.+ |+.+++-|...-.. ...+.........
T Consensus 265 i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lge 343 (615)
T KOG2247|consen 265 ILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLGE 343 (615)
T ss_pred ccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 666666666666666655432211 13445555555544333233333 33444433221100 0001111122334
Q ss_pred EEEecCCCEEEEEecCCeEEEecCC
Q 002496 277 IGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 277 i~~~~~~~~l~~~~~dg~v~i~~~~ 301 (915)
+.|.-+|++++.++..|...+.+.+
T Consensus 344 ~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 344 IEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred eeeeeccceeeehhccchHHHHHHh
Confidence 5667788888888777776665444
No 410
>PHA02713 hypothetical protein; Provisional
Probab=96.59 E-value=0.19 Score=57.81 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=94.8
Q ss_pred eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC------CeEEEEECCCCe-eEEEEeecCCccEEEEEEe
Q 002496 80 FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~ 151 (915)
.+..||..+++....-.-..... .+++. -++...++|+.+ ..+..||..++. .....+....... +++..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE
Confidence 56778887765432211111111 12222 255666677643 347788987762 1111111111111 22222
Q ss_pred cCCCCEEEEEECCC-----cEEEEECCCCCCceEEecCCCCee--EEEEEeCCCcCEEEEEeCC----------------
Q 002496 152 PKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDD---------------- 208 (915)
Q Consensus 152 p~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~d---------------- 208 (915)
++.+.+.|+.++ ++..||..+.+-.. ......+.. +++ .-++. +.+.|+.+
T Consensus 351 --~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~-~~~g~--IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 351 --DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMC-VLDQY--IYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred --CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEE-EECCE--EEEEeCCCcccccccccccccccc
Confidence 578888888764 47889987653211 111111111 111 12333 56666644
Q ss_pred -------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC------cEEEEeCCC-cc--eeeeeecCCc
Q 002496 209 -------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG------TVRIWHATT-YR--LENTLNYGLE 272 (915)
Q Consensus 209 -------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg------~v~iwd~~~-~~--~~~~~~~~~~ 272 (915)
..+..||..+.+-...-.........-...-++++.+.||.++ .+..||..+ .+ .+..+.....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477788776543221111111111112223456666776542 467888776 33 2333322212
Q ss_pred cEEEEEEecCCCEEEEEecCC
Q 002496 273 RVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg 293 (915)
..-...-+++..++|+.+|
T Consensus 505 --~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 505 --ALHTILHDNTIMMLHCYES 523 (557)
T ss_pred --cceeEEECCEEEEEeeecc
Confidence 2222223667777888777
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.51 E-value=0.15 Score=58.35 Aligned_cols=221 Identities=14% Similarity=0.097 Sum_probs=114.1
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCceeEEEec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCee
Q 002496 67 ARKQWVVAGADD------MFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~ 133 (915)
..+..+++|+.+ ..+..||..++.......- +...-.+++.. ++...++|+.| .++..||..++ .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN-Q 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-c
Confidence 345667777766 3678888887755433321 22223344444 45677788887 35778888766 2
Q ss_pred EEE--EeecCCccEEEEEEecCCCCEEEEEECCCc-----EEEEECCCCCCceEEecCCCCeeEEEEEe-CCCcCEEEEE
Q 002496 134 CTQ--IFEGHSHYVMQVTFNPKDTNTFASASLDRT-----IKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (915)
Q Consensus 134 ~~~--~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ 205 (915)
... .+....... .++.. ++.+.++|+.||. +-.||..+.+-...-. ............ ++. +.++|
T Consensus 361 W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~--iYi~G 434 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGK--LYIIG 434 (571)
T ss_pred eeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCE--EEEEc
Confidence 222 222111212 22222 6889999999864 7778876654222111 111222222222 333 66677
Q ss_pred eCC------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCc-----EEEEeCCCcceeee--eecCCc
Q 002496 206 SDD------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-----VRIWHATTYRLENT--LNYGLE 272 (915)
Q Consensus 206 ~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~--~~~~~~ 272 (915)
+.+ .++..||..+++....-.........-...-++.+.+.||.|+. |..||..+.+-... ......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 644 45788888876543222111111111122235667888887763 67788766543222 222211
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEE
Q 002496 273 RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~v~i 297 (915)
.+ -...-++...++|+.+|.-.+
T Consensus 515 ~~--g~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 515 AV--GVVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred cc--cEEEECCEEEEEecccCcccc
Confidence 11 122235666777777766554
No 412
>PRK10115 protease 2; Provisional
Probab=96.48 E-value=2.8 Score=49.54 Aligned_cols=195 Identities=6% Similarity=-0.005 Sum_probs=101.2
Q ss_pred CEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC------CeEEEEE
Q 002496 59 PVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWD 127 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd 127 (915)
.+..+.|+|+|++|+.+.+ ...|++.|+.+|+.+...-... -..++|++|++.|+.+..+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999999987644 2378899998886432221111 1469999999877665432 3677888
Q ss_pred CCCCe-eEEEEeecCCccEEEEEEecCCCCEEEEEEC---CCcEEEEECC--CCCCceEEecCCCCeeEEEEEeCCCcCE
Q 002496 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
+.++. .-..++........-..+.+.++..++..+. ++.+.+++.. .+.....+. +...+.. .+...++.-+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHEY-SLDHYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCEE-EEEeCCCEEE
Confidence 88762 1223333332333322333436665555443 3568888843 333222222 2222221 1222233212
Q ss_pred EEEEeC--CCeEEEEECCC-CcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002496 202 LITGSD--DHTAKVWDYQT-KSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 202 l~~~~~--dg~i~iwd~~~-~~~~~~~~~~-~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
+.+... ...|...++.+ ++....+... ...|..+.++.+ .++++...+|.-+++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEE
Confidence 222211 22344445442 2222222321 236788888743 46666666776555443
No 413
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.44 E-value=1.8 Score=46.96 Aligned_cols=146 Identities=11% Similarity=0.116 Sum_probs=87.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCe-eE--EEEeecCCccEEEEEEe---cC-CCCEEEEEECCCcEEEEECCCC--C-----
Q 002496 111 LPYVLSSSDDMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVTFN---PK-DTNTFASASLDRTIKIWNLGSP--D----- 176 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~~~i~~~~~~---p~-~~~~l~~~~~dg~i~v~d~~~~--~----- 176 (915)
...|++||..|.++||+...+. .. ...-..-..+|..+..- +. ....|++ -.-+.+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3589999999999999986542 11 11112234677777643 22 2234444 45677888887321 1
Q ss_pred --CceEEecCC--CCeeEEEEEeCCC---cCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002496 177 --PNFTLDAHQ--KGVNCVDYFTGGD---KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 177 --~~~~~~~~~--~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~ 249 (915)
.+..+..|. .....+++-|-|. +.++++-+.||.+.+|+-+.-.....+.. .--...+++.+....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111112222 2233444444332 35899999999999999654333333332 222334788888888999998
Q ss_pred CCcEEEEeC
Q 002496 250 DGTVRIWHA 258 (915)
Q Consensus 250 dg~v~iwd~ 258 (915)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 414
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.0037 Score=59.19 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=48.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCC
Q 002496 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 185 (915)
+..+++|+.+|.|.+|++................|.++.-+-.++++.++++.||.|+.|++.-.+..-....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 456899999999999998732112222222233344443333456689999999999999987666554444444
No 415
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.33 E-value=0.028 Score=67.25 Aligned_cols=149 Identities=16% Similarity=0.134 Sum_probs=101.2
Q ss_pred ccCHHHHhhhcCCCCcc---hHHHHHHHHHhCCChhhhhhcccCcc----------------------------------
Q 002496 601 RGDLERANEILPSIPKE---HHNSVARFLESRGMIEEAIEVATDPD---------------------------------- 643 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~~---~~~~~~~~~~~~~~~~~al~~~~~~~---------------------------------- 643 (915)
.|+++.|.+++..++.. .++.+..-+.+.|..++|+++.....
T Consensus 171 ~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 171 CGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred CCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 56677776666665543 24555555566666666666543320
Q ss_pred --------c-----eeeeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------Ccch
Q 002496 644 --------Y-----RFELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSG 699 (915)
Q Consensus 644 --------~-----~f~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~ 699 (915)
. -..++.+.|++++|.++...+.. ...|..|...+.+.|+++.|.+.|.++. -|..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 0 01567788999999999987754 4589999999999999999999998774 2346
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHC
Q 002496 700 LLLLYSSLGDAEGISKLASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 700 l~~l~~~~g~~~~~~~l~~~~~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~ 749 (915)
++..|...|+.+....+-+...+.|- ++.-..+|...|++++|.++|.++
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777778887766666555555542 233345566678888888776554
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.31 E-value=1.4 Score=44.12 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=118.5
Q ss_pred ceeEEEec-CCCCEEEEEEcCCCCEEEEEEcCC--eEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 90 DKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 90 ~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+.+..+.. .......+.|..+|.++-+.+.-| .|+.+|+.++...........-.--.++.. ++.+....-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 33444442 233456788877777777777665 799999999854444333222223344444 3455555666889
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCc-----cCeEEEEEeCCC
Q 002496 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPEL 241 (915)
Q Consensus 167 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~i~~~~~~ 241 (915)
..+||..+.+.+.++.- .+.-+.++ .+++ .|+.......++++|..+.+...++.-.. ..+.-+.|. +|
T Consensus 112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred EEEEccccceEEEEEec-CCcceEEE--cCCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 99999998888777764 34556666 3555 46666667899999998887766664322 235556666 55
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeec---------------CCccEEEEEEecCCCEEEEEec
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENTLNY---------------GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~~~~~ 291 (915)
.+.|=.-....|...|..+|+....+.. ...-...|++.|..+.+.+.+.
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5555555566788889999987765431 1245789999998887776654
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=96.28 E-value=2 Score=45.78 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=131.9
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEE----ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~ 90 (915)
...+.+|.|.....-+++|. +|.|..=. +.|+.-.... ....++.++.|.++ ..+++| ..+.|.. ..+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCC
Confidence 55789999986666677764 55443321 3333222211 12345778888654 334444 4454332 222233
Q ss_pred eeEEEe---cCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEECCCc
Q 002496 91 KVKVFE---AHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 91 ~~~~~~---~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.-..+. ... .........+ +. +..++..|.|..-+ +.+.............+.++.+.| ++..+ ..+..|.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~v-~~g~~G~ 194 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKYV-AVSSRGN 194 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeEE-EEeCCce
Confidence 222221 111 1222222332 22 33344455443332 233233333333356788899988 55444 4445665
Q ss_pred EEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCC
Q 002496 167 IKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPEL 241 (915)
Q Consensus 167 i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~~ 241 (915)
+..-.-..++.-. ........++.+.+.+++. .++ .+..|.+++=+...|..-..... ....+.++.+.|++
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~--~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN--LWM-LARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC--EEE-EecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 5432112222111 1223446778888888776 444 45567665433344433222111 12357889999987
Q ss_pred CEEEEEEcCCcEEEEeCCCcceeeeeec---CCccEEEEEEecCCCEEEEEecCCeEEEe
Q 002496 242 PIIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~v~i~ 298 (915)
..+++ +.+|.+. .....++.-..... -....+.+.|..+++.++ .+..|.|.-+
T Consensus 272 ~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 272 EIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred CEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 76555 4567554 34444444333321 123577788776665544 5566666553
No 418
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.26 E-value=0.019 Score=67.59 Aligned_cols=130 Identities=17% Similarity=0.167 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCChhhhhhccc-----Cccce---e---eeecccCCHHHHHHHHHH-----cCChhHHHHHHHHHHHcCC
Q 002496 620 NSVARFLESRGMIEEAIEVAT-----DPDYR---F---ELAIQLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGK 683 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~-----~~~~~---f---~~~l~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~ 683 (915)
.....++...|.+++|+.... +|... + .+++.+|++++|.+.... ..++..|..+|..+...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 444556667788888876542 33322 1 445688999999988764 2457899999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hHHHHHHHHcCCHHHHHHHHHHC
Q 002496 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQG-KN----NVAFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~l~~~~~~~~-~~----~~a~~~~~~~g~~~~a~~l~~~~ 749 (915)
++.|..+|.++-... .+..++...|+.+......+.+.... +. ..-+.++...|++++|++.|.++
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999885432 23445666777665555444443322 11 22345566677777777776653
No 419
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.079 Score=56.50 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=99.4
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE-------EEEEEcCCeEEEEECCCCee-EEEEe
Q 002496 68 RKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY-------VLSSSDDMLIKLWDWEKGWM-CTQIF 138 (915)
Q Consensus 68 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~ 138 (915)
+.++|+ ++.....++-.|++.|+.+...+-|.+ |.-+.+.|+.+. -++|-.+..|.-||.+-... .....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 445556788889999999999987776 777888886542 34677788899999884322 22222
Q ss_pred ecCC----ccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEE
Q 002496 139 EGHS----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 139 ~~~~----~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.+|. ....|.+-. ...++++||.+|.|++||--.......+.+...+|..+..+.+|+ +| .|..+..+.+.
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK--wi-l~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK--WI-LATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc--EE-EEecccEEEEE
Confidence 2221 223444443 567999999999999999744444556678889999999999998 34 44556677777
Q ss_pred ECC
Q 002496 215 DYQ 217 (915)
Q Consensus 215 d~~ 217 (915)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.24 E-value=1.2 Score=42.73 Aligned_cols=207 Identities=11% Similarity=0.103 Sum_probs=114.0
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEE-EecCCCCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCCe-eEEEEe-ec---
Q 002496 70 QWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGW-MCTQIF-EG--- 140 (915)
Q Consensus 70 ~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~--- 140 (915)
.++.+--..|.|.-||+.+.+..+. +.+. +..++.+--.+ .+.+.++..-.|.-||-.... .+...+ +-
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444566777788876543322 2222 13333332222 233444444345556632211 112221 10
Q ss_pred -CCccEEEEEEecCCCCEEEEEEC---------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCe
Q 002496 141 -HSHYVMQVTFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 141 -~~~~i~~~~~~p~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
...+...-..+| ++++++-.-. .|.++.|-.. ++ +..+...-.--+.++|..+.+. +..+-+.+-.
T Consensus 106 ~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~~~v~IsNgl~Wd~d~K~-fY~iDsln~~ 181 (310)
T KOG4499|consen 106 RKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIWNCVGISNGLAWDSDAKK-FYYIDSLNYE 181 (310)
T ss_pred HHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CC-ceeeehhccCCccccccccCcE-EEEEccCceE
Confidence 133455566677 6766432211 2445555432 22 2222223333467888866553 5666677778
Q ss_pred EEEEE--CCCCc-----EEEEecC---Ccc-CeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCCccEEEEEE
Q 002496 211 AKVWD--YQTKS-----CVQTLEG---HTH-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 211 i~iwd--~~~~~-----~~~~~~~---~~~-~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
|.-|| ..+|. .+..++. ... -.-.+++..+|.+.++.-..|+|...|..+|+.+.++..+..++++++|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 87788 44443 2333322 111 1234566778888888888999999999999999999999999999999
Q ss_pred ecC
Q 002496 280 MKS 282 (915)
Q Consensus 280 ~~~ 282 (915)
---
T Consensus 262 gGk 264 (310)
T KOG4499|consen 262 GGK 264 (310)
T ss_pred cCC
Confidence 643
No 421
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.20 E-value=0.016 Score=40.51 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce
Q 002496 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM 49 (915)
Q Consensus 14 h~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~ 49 (915)
...+|.+++|+|...+||.|..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 4443
No 422
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.16 E-value=1.1 Score=45.59 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=88.2
Q ss_pred CEEEEEEcCCCCeEEEEE---cCCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCcee
Q 002496 17 RVKSVDLHPSEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKV 92 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd-~~~~~~~ 92 (915)
.+.+.++|++++.+|... ....+.++. .+....... ....+..-.|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999887665 233455554 333333322 233678889999987777766666666664 3333322
Q ss_pred E-EEec--CCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCC---C--eeE---EEEeecCCccEEEEEEecCCCCEE
Q 002496 93 K-VFEA--HTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEK---G--WMC---TQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 93 ~-~~~~--~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~---~--~~~---~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
. .... -...|+.+.+||||.+++... .++.|.+--+.. + ... ..........+..+.|.+ +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 1 2221 112899999999999988665 347777765431 1 011 111222345789999998 66666
Q ss_pred EEEECCC
Q 002496 159 ASASLDR 165 (915)
Q Consensus 159 ~~~~~dg 165 (915)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 6555443
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.08 E-value=1.9 Score=43.52 Aligned_cols=221 Identities=14% Similarity=0.175 Sum_probs=126.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECC------CC-ceeEEEec-----CCCCEEEEEEcCCCCE------------EE
Q 002496 60 VRSAKFVARKQWVVAGADDMFIRVYNYN------TM-DKVKVFEA-----HTDYIRCVAVHPTLPY------------VL 115 (915)
Q Consensus 60 v~~l~~s~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~~~~------------l~ 115 (915)
-..|+++|.+.+-++....+...+||.+ .. ..+..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888888888999999986 12 22333331 2346778888754433 67
Q ss_pred EEEcCCeEEEEECCCCee----EEEEeec-CCccE-EEEEEecC-CCCEE-EEEECCCcEEEEECCCCCCce--EE----
Q 002496 116 SSSDDMLIKLWDWEKGWM----CTQIFEG-HSHYV-MQVTFNPK-DTNTF-ASASLDRTIKIWNLGSPDPNF--TL---- 181 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~----~~~~~~~-~~~~i-~~~~~~p~-~~~~l-~~~~~dg~i~v~d~~~~~~~~--~~---- 181 (915)
.+++||+|.-|...-+.. ....+.. ....| ..+++-+. .+++| ++--..++|.+||-.-.+... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998643311 1111211 11222 33444321 23444 444457899999853222110 01
Q ss_pred -ecCCCCeeE--------EEEEeC-CCcCEEEEEeCCCeEEEEECCCCcEEEEec--CCccCeEEEEEeC------CCCE
Q 002496 182 -DAHQKGVNC--------VDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHP------ELPI 243 (915)
Q Consensus 182 -~~~~~~v~~--------~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~i~~~~------~~~~ 243 (915)
.....+.+. +.|... .....=+.|..-|.|-+||.. |+.++.+. +.-...+.++..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 011111111 111110 000012233445789999975 88888774 2334467777765 4566
Q ss_pred EEEEEcCCcEEEEeCCCcceeeeeecCC------ccEEEEEEec
Q 002496 244 IITGSEDGTVRIWHATTYRLENTLNYGL------ERVWAIGYMK 281 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~i~~~~ 281 (915)
|+----||+|..||..+++.+..+.... ..+|.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7766679999999999998877776543 3467777765
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.1 Score=50.61 Aligned_cols=201 Identities=8% Similarity=0.052 Sum_probs=105.2
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEE--EeecCCccEEEEEEecCC
Q 002496 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~ 154 (915)
..-.|+||++ +|+.+..+.-..+.+-.+.|+.+. .|++...+|++.+|++-....... .+......|..+.+.. +
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 3456888887 466666554334478899999775 577778999999999876422111 1122233455555543 2
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEec-CCCCeeEEEEE--eCCCcCEEEEEeC--CC-eEEEEECCCCcEEEEecCC
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYF--TGGDKPYLITGSD--DH-TAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~l~~~~~--dg-~i~iwd~~~~~~~~~~~~~ 228 (915)
| +++-..+|++.+-.-.+.....++.. ......+.+|. +++....++..-. .+ .+..-+..+. ....+...
T Consensus 139 G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~ 215 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWP 215 (829)
T ss_pred c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCC
Confidence 3 34444456655543222112222221 11111222332 2222112211110 00 0111111111 12223333
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeecCC-ccEEEEEEecCC
Q 002496 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSS 283 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~ 283 (915)
.+.+..+..||+.++|+.-...|.|.+-+....+....++... .....++|..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 4568889999999999999999999999888777666665321 222256665443
No 425
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.93 E-value=5.1 Score=47.23 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeEEEE---ecCCCEEEEEEeCCC------CEEEEEeCCCeEEEEECCCCceeEEEe-
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAKSFE---VTELPVRSAKFVARK------QWVVAGADDMFIRVYNYNTMDKVKVFE- 96 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~------~~l~~~~~dg~i~vwd~~~~~~~~~~~- 96 (915)
...++++..+|.+.-+..........+. .-+..|.|+++.++. ++++.++.|++++++.+.....+..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 3456666667776666543332333332 235678899998764 679999999999999998666666554
Q ss_pred -cCCCCEEEEEE---cCCCC------EEEEEEcCCeEEEE
Q 002496 97 -AHTDYIRCVAV---HPTLP------YVLSSSDDMLIKLW 126 (915)
Q Consensus 97 -~~~~~i~~l~~---s~~~~------~l~~~~~dg~i~iw 126 (915)
+-..++.++.+ ..++. +|.+|-.+|.+.-.
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 33344444443 22332 56677777766544
No 426
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.93 E-value=0.024 Score=39.68 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 91 (915)
..+|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4554
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.84 E-value=3.2 Score=44.25 Aligned_cols=234 Identities=12% Similarity=0.143 Sum_probs=119.0
Q ss_pred CEEEEEEcCCCCeEEEEEcCCcEEEEECCCCce---eEEEE----ecCCCEEEEEEeCC---CCEEEEEeC-C-------
Q 002496 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM---AKSFE----VTELPVRSAKFVAR---KQWVVAGAD-D------- 78 (915)
Q Consensus 17 ~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~---~~~~~----~~~~~v~~l~~s~~---~~~l~~~~~-d------- 78 (915)
..++|+|.|||..++ +...|.|++++ ..+.. +..+. ........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999999987554 56699999999 55544 22221 23456799999994 334443332 1
Q ss_pred -CeEEEEECCCC-------cee-EEEec---CCCCEEEEEEcCCCCEEEEEEcC-------------CeEEEEECCCCe-
Q 002496 79 -MFIRVYNYNTM-------DKV-KVFEA---HTDYIRCVAVHPTLPYVLSSSDD-------------MLIKLWDWEKGW- 132 (915)
Q Consensus 79 -g~i~vwd~~~~-------~~~-~~~~~---~~~~i~~l~~s~~~~~l~~~~~d-------------g~i~iwd~~~~~- 132 (915)
..|.-|.+..+ +.+ ..+.. ....-..|.|.|+|.+.++.+.. |.|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444544433 111 12222 23345679999999655554432 334434433210
Q ss_pred -----------eEEEEeecCCccEEEEEEecCCCCEEEEEE-CCCcEEEEECCCC-------------------------
Q 002496 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSP------------------------- 175 (915)
Q Consensus 133 -----------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~v~d~~~~------------------------- 175 (915)
.....-.++.. ...++|+|..+.++++=. .++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111122322 468899994355554421 1222222222111
Q ss_pred ----CCceEEecCCCCeeEEEEEeCCC-----cCEEEEEeCCCeEEEEECCCCcEEE---E-ecCCccCeEEEEEeCCCC
Q 002496 176 ----DPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKSCVQ---T-LEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 176 ----~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~i~~i~~~~~~~ 242 (915)
.+...+. +...+..+.|..... +.++++....+.|....+..+..+. . +......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 1223333 334566677765432 2255555556788888876543322 1 223444799999999998
Q ss_pred EEEEEEcCCcEE
Q 002496 243 IIITGSEDGTVR 254 (915)
Q Consensus 243 ~l~~~~~dg~v~ 254 (915)
+.++...+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877788764
No 428
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.82 E-value=0.058 Score=66.08 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=69.9
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc------CChhHHHHHHHHHHH
Q 002496 619 HNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV------QSESKWKQLGELAMS 680 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~------~~~~~w~~la~~al~ 680 (915)
++.+...+-+.|..+.|.++...... . ...+.+.|++++|.++...+ .+...|..|-..+.+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35555666666666666655433211 0 13455666666666666544 234566666666666
Q ss_pred cCChhhHHHHHHHcCC-----------cchhHHHHHhcCCHHHHHHHHHHHHHcCC------chHHHHHHHHcCCHHHHH
Q 002496 681 TGKLEMAEGCMKQAMD-----------LSGLLLLYSSLGDAEGISKLASLAKEQGK------NNVAFLCLFMLGKLEDCL 743 (915)
Q Consensus 681 ~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~g~~~~~~~l~~~~~~~~~------~~~a~~~~~~~g~~~~a~ 743 (915)
.|+++.|.+.|..+.. |..++..|...|+.+...++-+.....|- ++.....|...|++++|.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 6777766666665532 23455556666666655555554444442 223333444555555555
Q ss_pred HHHH
Q 002496 744 QLLV 747 (915)
Q Consensus 744 ~l~~ 747 (915)
++|.
T Consensus 635 ~lf~ 638 (1060)
T PLN03218 635 SIYD 638 (1060)
T ss_pred HHHH
Confidence 5543
No 429
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.026 Score=58.26 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCc------------chhHHHHHhcCCHHHHHHHHHHHHHcC-----CchHHH
Q 002496 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDL------------SGLLLLYSSLGDAEGISKLASLAKEQG-----KNNVAF 730 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~------------~~l~~l~~~~g~~~~~~~l~~~~~~~~-----~~~~a~ 730 (915)
-..|+.=|..+-++|++..|.+||..+-.. -....++..+|....-..-.+.+...+ -+.+++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 458999999999999999999999977533 233333334444222211112221111 246788
Q ss_pred HHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCchHHHHHHHHHHhhhhcC--------------hhhhhhcCCCccCC
Q 002496 731 LCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--------------PKAAESLADPEEYS 796 (915)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~--------------~~~a~~l~~~~~~~ 796 (915)
.|++.++++++|++-|.++-+.+.-.+.+|++...+...=..+|+.|...-+ +|+|-... |..+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~H-pd~~- 406 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHH-PDKN- 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC-CCcC-
Confidence 8999999999999999988877777677777643222222235555554221 12222222 2221
Q ss_pred CccccHHHHHHHHHHHhhccCCCCCCccccc
Q 002496 797 NLFDDWQVALAVESKAAATRGVHPPAEDYVN 827 (915)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (915)
-..++|+|..|++.-.+|....++.+
T Consensus 407 -----agsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 407 -----AGSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred -----cchhHHHHHHHHHHHHHHHHhcCHHH
Confidence 11268999999999999988888754
No 430
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.74 E-value=0.12 Score=63.52 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=95.2
Q ss_pred ccCHHHHhhhcCCCCc---chHHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc
Q 002496 601 RGDLERANEILPSIPK---EHHNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~---~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~ 665 (915)
.+.+++|..+++.++. ..++.+.+.+-+.|..+.|.++...... . ...+.+.|++++|.++...+
T Consensus 419 ~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4556666555444433 2235555666667777777766433211 1 25677889999999988876
Q ss_pred C------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC---------cchhHHHHHhcCCHHHHHHHHHHHHHcC--C---
Q 002496 666 Q------SESKWKQLGELAMSTGKLEMAEGCMKQAMD---------LSGLLLLYSSLGDAEGISKLASLAKEQG--K--- 725 (915)
Q Consensus 666 ~------~~~~w~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~g~~~~~~~l~~~~~~~~--~--- 725 (915)
. +...|..|-..+.+.|+++.|.++|.++.. |..++..|...|+.+....+-+.....+ -
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 4 567899999999999999999999988742 4577778888888776655544333211 1
Q ss_pred ---chHHHHHHHHcCCHHHHHHHHH
Q 002496 726 ---NNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 726 ---~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
++.-..+|...|++++|.++|.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1222344556677777766654
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.45 Score=55.78 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=93.9
Q ss_pred CEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCeeE----EEEeec------CCccEEEEEEecCCCCEEEEEECCCcEE
Q 002496 101 YIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMC----TQIFEG------HSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~----~~~~~~------~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+|..+..++|+...++.. .+-.|..||+++-... ...+.. ......++.|+|.=....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 466667777766544433 3347889998753111 111111 2234567889996666778888899999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCCCEE
Q 002496 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELPII 244 (915)
Q Consensus 169 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~i~~~~~~~~l 244 (915)
+..+........--......++++|+|.|. .+++|...|++.-|-.. ++....+.. ....|.+|+|-....++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccc--eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 987754333322223456679999999998 59999999999988754 443333322 14679999998877766
Q ss_pred EEE
Q 002496 245 ITG 247 (915)
Q Consensus 245 ~~~ 247 (915)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 432
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.60 E-value=0.11 Score=62.04 Aligned_cols=154 Identities=20% Similarity=0.144 Sum_probs=91.7
Q ss_pred ccCHHHHhhhcCCCCcc---hHHHHHHHHHhCCChhhhhhcccCccce------------eeeecccCCHHHHHHHHHHc
Q 002496 601 RGDLERANEILPSIPKE---HHNSVARFLESRGMIEEAIEVATDPDYR------------FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~~---~~~~~~~~~~~~~~~~~al~~~~~~~~~------------f~~~l~l~~~~~A~~~a~~~ 665 (915)
.|++++|.+++..+... +++.++.-+-+.|+.++|+++....... +..+...|++++|+++...+
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 57777777766555432 3466666677777777777665432111 13345677777777776654
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC------cchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002496 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAMD------LSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...|..+.+.+...|+++.|.+.|.++.. |..|+..++..|+.+....+++.....+-.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~------ 526 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE------ 526 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC------
Confidence 2 223567777777777888888777776643 233444444455544333333322211110
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002496 733 LFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
..+.|.-.+++|.+.|+|++|.++.+..
T Consensus 527 --~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 527 --KLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred --CCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1245667788899999999998877654
No 433
>PLN03077 Protein ECB2; Provisional
Probab=95.53 E-value=0.1 Score=64.10 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=74.8
Q ss_pred eeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002496 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~g~~~~~~~ 715 (915)
.++.+.|++++|.++...+.. ...|..+...+.+.|+++.|.+.|.++. .|..++..+...|+.+....
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 556678888888888887654 3468888888888999999988888763 23456666777888777777
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHCCC
Q 002496 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVESNR 751 (915)
Q Consensus 716 l~~~~~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~~~ 751 (915)
+-+.+...|-. +.-..+|...|++++|.++|.++..
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 76666665542 2223456667888888887766544
No 434
>PHA03098 kelch-like protein; Provisional
Probab=95.36 E-value=0.46 Score=54.85 Aligned_cols=145 Identities=8% Similarity=0.012 Sum_probs=69.9
Q ss_pred CCeEEEEEcC------CcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceeEEE
Q 002496 27 EPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 27 ~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~ 95 (915)
+..++.|+.+ ..+..||..+++....-.............-++..++.|+.+ ..+..||..+.+....-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455566543 257788877765432111111111111222367777788764 35778888765543221
Q ss_pred ec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCeeEEEE--eecCCccEEEEEEecCCCCEEEEEECCC-
Q 002496 96 EA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDR- 165 (915)
Q Consensus 96 ~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg- 165 (915)
.. +...-.+++. -++...+.|+.+ ..+..||..++ ..... +..... -.++... ++..++.|+.++
T Consensus 375 ~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~ 449 (534)
T PHA03098 375 PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGSPLPISHY-GGCAIYH--DGKIYVIGGISYI 449 (534)
T ss_pred CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecCCCCcccc-CceEEEE--CCEEEEECCccCC
Confidence 11 1111112222 245666666632 45888998865 22221 111111 1122222 566777776432
Q ss_pred -------cEEEEECCCCC
Q 002496 166 -------TIKIWNLGSPD 176 (915)
Q Consensus 166 -------~i~v~d~~~~~ 176 (915)
.+.+||..+++
T Consensus 450 ~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCcccceEEEecCCCCc
Confidence 37888887654
No 435
>PHA03098 kelch-like protein; Provisional
Probab=95.28 E-value=0.52 Score=54.43 Aligned_cols=184 Identities=11% Similarity=0.087 Sum_probs=86.5
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCee
Q 002496 67 ARKQWVVAGADDM------FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 133 (915)
.++..++.|+.++ .+..||..+.+....-.. .......+. -++...+.|+.+ ..+..||..++ .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 4566677776532 577888877655322111 111122222 256666777754 35777888765 2
Q ss_pred EEEEee-cCCccEEEEEEecCCCCEEEEEECC------CcEEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEE
Q 002496 134 CTQIFE-GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 134 ~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~ 204 (915)
....-. .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-... .....+ -.++. ..++. +++.
T Consensus 370 W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~-~~~~~--iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAI-YHDGK--IYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccCceEE-EECCE--EEEE
Confidence 222111 111111122222 56777777742 3578888876532211 111111 11222 22333 5566
Q ss_pred EeCC--------CeEEEEECCCCcEEEE--ecCCccCeEEEEEeCCCCEEEEEEcC-----CcEEEEeCCCc
Q 002496 205 GSDD--------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (915)
Q Consensus 205 ~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 261 (915)
|+.+ ..+.+||..+++-... +.........+. -++.+++.||.+ +.|.+||..+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 6532 2388888876553221 111111111222 256666777654 35667776544
No 436
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.23 E-value=0.19 Score=55.38 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=43.9
Q ss_pred HHHHHHHhCCChhhhhhcccCc-----cce------eeeecccCCHHHHHHHHHHcCC----------hhHHHHHHHHHH
Q 002496 621 SVARFLESRGMIEEAIEVATDP-----DYR------FELAIQLGRLEVAQEIATEVQS----------ESKWKQLGELAM 679 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~~~~-----~~~------f~~~l~l~~~~~A~~~a~~~~~----------~~~w~~la~~al 679 (915)
.++..+...|..+.|+.+.... ... -.++.+.|++++|.++.+.+.. ...|..+|..+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3355556667777776543221 111 1345667777777777654311 113456777777
Q ss_pred HcCChhhHHHHHHHcC
Q 002496 680 STGKLEMAEGCMKQAM 695 (915)
Q Consensus 680 ~~~~~~~A~~~y~~~~ 695 (915)
..++++.|+++|.++-
T Consensus 192 ~~~~~~~A~~~~~~al 207 (389)
T PRK11788 192 ARGDLDAARALLKKAL 207 (389)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 7788888877777653
No 437
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=0.12 Score=56.37 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=48.2
Q ss_pred eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHH
Q 002496 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGI 713 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~~~ 713 (915)
..+-..|.+|.|....++. .=+.....||...-..|++..|+.||.++-.+ ..|..+|+..|..++.
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 6677889999988877642 22678889999999999999999999987533 2344455555554443
No 438
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.10 E-value=0.15 Score=59.96 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=21.3
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002496 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+..+|++++|.+..++. ++...|..||..+...|+++.|..+|.++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555444322 12334444555555555555555555443
No 439
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.06 E-value=4.6 Score=41.10 Aligned_cols=142 Identities=11% Similarity=-0.022 Sum_probs=84.8
Q ss_pred CEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE-CCCCeeE
Q 002496 59 PVRSAKFVARKQWVVAGA---DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEKGWMC 134 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~ 134 (915)
.+.+.+++++++.++... ....+.++... ....... ....+..-.|++++........+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 33456666543 3332221 223688889999987766666666666663 2232122
Q ss_pred EEEeec--CCccEEEEEEecCCCCEEEEEE---CCCcEEEEECC---CCCC------ceEEecCCCCeeEEEEEeCCCcC
Q 002496 135 TQIFEG--HSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLG---SPDP------NFTLDAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 135 ~~~~~~--~~~~i~~~~~~p~~~~~l~~~~---~dg~i~v~d~~---~~~~------~~~~~~~~~~v~~~~~~~~~~~~ 200 (915)
...... ....|..+.++| |+..++... .++.|.+--+. .+.+ ..........+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-- 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-- 178 (253)
T ss_pred eEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE--
Confidence 211111 112899999999 777776655 24667666542 2211 111223346788999998876
Q ss_pred EEEEEe
Q 002496 201 YLITGS 206 (915)
Q Consensus 201 ~l~~~~ 206 (915)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 444443
No 440
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.97 E-value=0.16 Score=58.00 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCch
Q 002496 653 GRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNN 727 (915)
Q Consensus 653 ~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~ 727 (915)
|++++|.+++.++ .....|..||+.+.+.|+++.|..|.. +-.+...+|.+++..+++.+...|+++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l--------lAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--------LAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH--------HHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 6666666666532 346677777777777777777755433 334455667777777777777777777
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHCCCchHHHHHHHhc
Q 002496 728 VAFLCLFML--------GKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 728 ~a~~~~~~~--------g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
.|-.||-.. .-+-+-..||.++|...+|++-.+..
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 777776553 12356667777777777777554443
No 441
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.95 E-value=6.9 Score=46.05 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=23.0
Q ss_pred cCeEEEEEeCCC---CEEEEEEcCCcEEEEeCCCcc
Q 002496 230 HNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 230 ~~i~~i~~~~~~---~~l~~~~~dg~v~iwd~~~~~ 262 (915)
..|..+.|+|.+ ..|++-+.|+++|+||+...+
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 456677788753 677777778888888876433
No 442
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.17 Score=53.34 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=58.0
Q ss_pred HcCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHc----
Q 002496 664 EVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFML---- 736 (915)
Q Consensus 664 ~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 736 (915)
+..++.+|-.||+-+++.++++.|++||.++ +|..+. .+.+|+++=++-++.+.|..+|...
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~-----------~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS-----------ALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3566899999999999999999999999986 444332 2455666666666666666655442
Q ss_pred ---CCHH----H----HHHHHHHCCCchHHHHHHHh
Q 002496 737 ---GKLE----D----CLQLLVESNRIPEAALMARS 761 (915)
Q Consensus 737 ---g~~~----~----a~~l~~~~~~~~~A~~~ar~ 761 (915)
|..+ + -++.|.+++.|++|-..|..
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 2221 1 23556677777777665544
No 443
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.70 E-value=0.38 Score=43.76 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHhCCChhhhhhcc-cCcccee----eeecccCCHHHHHHHHHH---c--CChhHHHHHHHHHHHcCChhhHHHH
Q 002496 621 SVARFLESRGMIEEAIEVA-TDPDYRF----ELAIQLGRLEVAQEIATE---V--QSESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~-~~~~~~f----~~~l~l~~~~~A~~~a~~---~--~~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
.+..|+..-|-+.....+. .+....+ ....+.|++++|.++.+. + .+..-|-.||-.+-..|++..|..|
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455666555555544444 3322222 334577888888777653 3 3467899999999999999999999
Q ss_pred HHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002496 691 MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 691 y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
|.++..++- .|+.- .--++.|++.+|+.+.|.+.|.
T Consensus 92 Y~~A~~L~~--------ddp~~-------------~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 92 YGRAAQIKI--------DAPQA-------------PWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHhcCC--------CCchH-------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 998754321 22211 1236678888999999988876
No 444
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.64 E-value=11 Score=44.58 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=55.5
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCce--e-EEE--------ecCCCCEEEEEEcCC---CCEEE
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYN---------TMDK--V-KVF--------EAHTDYIRCVAVHPT---LPYVL 115 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~---------~~~~--~-~~~--------~~~~~~i~~l~~s~~---~~~l~ 115 (915)
.|..+..+|+|+.++..+..|...+.=.. .|+. . +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58889999999999999887755443211 1111 1 111 133457899999996 57899
Q ss_pred EEEcCCeEEEEECCCCeeEEEEe
Q 002496 116 SSSDDMLIKLWDWEKGWMCTQIF 138 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~ 138 (915)
+-+.|+++++||+.....+.+++
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEecCCEEEEEecCCCCCCeEEE
Confidence 99999999999997654444443
No 445
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.64 E-value=8.2 Score=42.02 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=107.2
Q ss_pred eEEEEEcCCcEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEE
Q 002496 29 WILASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCV 105 (915)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l 105 (915)
.+.++..+|.|.-.|..++..+....... ..+.+-.+..+|+ +++++.+|.+..+|..+|+.+....... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35555678888888888887654333221 2222223333665 8888899999999998999988887655 111122
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecC--CccEEEEEEecCCCCEEEEEEC--CCcEEEEECCCCCCceEE
Q 002496 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~ 181 (915)
..-.++ .+..++.+|.+...|..++...-...... ...+..-... ....+..+.. ++.+.-.|..++......
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~--~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI--ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee--ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222233 44455577888888888773322211110 1111111111 2334444444 556777777777665543
Q ss_pred ec----CCC------CeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCC
Q 002496 182 DA----HQK------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 182 ~~----~~~------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.. ... .+..-...-++ -+..++.++.+...|..+++.+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 21 111 11111111122 2567778888999999999998888753
No 446
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.60 E-value=0.23 Score=54.73 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=79.0
Q ss_pred HHccCHHHHhhhcCCCCc------chHHHHHHHHHhCCChhhhhhcccC-----ccce------e-----eeecccCCHH
Q 002496 599 VMRGDLERANEILPSIPK------EHHNSVARFLESRGMIEEAIEVATD-----PDYR------F-----ELAIQLGRLE 656 (915)
Q Consensus 599 ~~~~~~~~a~~~l~~i~~------~~~~~~~~~~~~~~~~~~al~~~~~-----~~~~------f-----~~~l~l~~~~ 656 (915)
...|+++.|...+..... ..+..++..+.+.|.+++|++.... +... + ..++..|+++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 346788887665543321 1234556677788888888765422 1110 1 2235779999
Q ss_pred HHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc---------chhHHHHHhcCCHHHHHHHHHHH
Q 002496 657 VAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL---------SGLLLLYSSLGDAEGISKLASLA 720 (915)
Q Consensus 657 ~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~g~~~~~~~l~~~~ 720 (915)
+|.+.+++. .....|..+|..+...|+++.|.+.|.++... ..+..+|...|+.+......+.+
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988753 23557889999999999999999999987633 23345566666666554444433
No 447
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.51 E-value=0.18 Score=47.88 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------hhHHHHHhcCCHHHHHHHHHHH----HHcCCch-----
Q 002496 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----------GLLLLYSSLGDAEGISKLASLA----KEQGKNN----- 727 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~g~~~~~~~l~~~~----~~~~~~~----- 727 (915)
...|..+|+++.+.|+++.|.+||.++.++- .++++....+|...+......+ ...|+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4578899999999999999999999999874 5677777888888776543333 2222221
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHCC
Q 002496 728 --VAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 728 --~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
..+..++..++|.+|.++|+++.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 13344556688999999998875
No 448
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.45 E-value=0.46 Score=60.35 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=72.4
Q ss_pred ecccCCHHHHHHHHHHc-CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHH
Q 002496 649 AIQLGRLEVAQEIATEV-QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASL 719 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~~~~~l~~~ 719 (915)
....|++++|.++++.. .++..+..||..++..|+++.|+++|.++-.. -.+..+|...|+.+......+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45778889998888743 34567888999999999999999999977532 2456677778887766655554
Q ss_pred HHHcCCc-----hHHHHHHHHcCCHHHHHHHHHHCC
Q 002496 720 AKEQGKN-----NVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 720 ~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
+...... ...+.++...|++++|+++|.+.-
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4433211 112456667888888888888753
No 449
>PLN03077 Protein ECB2; Provisional
Probab=94.41 E-value=0.22 Score=61.30 Aligned_cols=155 Identities=19% Similarity=0.108 Sum_probs=108.2
Q ss_pred HccCHHHHhhhcCCCCcc--hHHHHHHHHHhCCChhhhhhcccC-------ccce-e----eeecccCCHHHHHHHHHHc
Q 002496 600 MRGDLERANEILPSIPKE--HHNSVARFLESRGMIEEAIEVATD-------PDYR-F----ELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 600 ~~~~~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~al~~~~~-------~~~~-f----~~~l~l~~~~~A~~~a~~~ 665 (915)
..|.+++|..++..++.. .++.+..-+-+.|+.++|+++... |+.. | ..+...|++++|+++...+
T Consensus 536 k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 368888887777666332 346777778888999999887643 2221 2 4455779999999998765
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcC------CcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002496 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAM------DLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...+..+.+.+.+.|+++.|++.+.++. -|..|+..|+..++.+..+.+++.....+-.+.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---- 691 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---- 691 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc----
Confidence 4 34578999999999999999999999874 133555566667776665555544444333332
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002496 733 LFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
+-+---..+|.+.|+|++|..+++..
T Consensus 692 ----~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 692 ----GYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred ----chHHHHHHHHHHCCChHHHHHHHHHH
Confidence 22444567899999999999888765
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=1.7 Score=53.23 Aligned_cols=231 Identities=11% Similarity=0.120 Sum_probs=111.6
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 93 (915)
......++|+|...++|.+..+|.|++|....-+......... ..+..+.|........+...+..+.+|.......+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 3467789999999999999999999999843322221111110 122333333333333444445556666543221111
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEE-EEecCC-CCEEEEEECCCcEEEEE
Q 002496 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV-TFNPKD-TNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~p~~-~~~l~~~~~dg~i~v~d 171 (915)
+...+++..-.+--.. +.| ..+.+++||+.-.+.....+......-... .+.+.. .-..... +-.-..|.
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~ 186 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI--DLDTVLIS 186 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc--ccccceee
Confidence 1222333322222223 445 778888888764311111111111100000 000000 0000000 11111111
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002496 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg 251 (915)
+.-. . ..+..+..++.+..+..... ++.+...+.+.+|+.........+. +....+++++..++++..||
T Consensus 187 ~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dg 256 (993)
T KOG1983|consen 187 LPDA-Y-LGLSLIEYESLQVLYYSPTK---ILIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDG 256 (993)
T ss_pred cccc-c-ccccccccccceeeeecCCC---cceeeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecC
Confidence 1111 1 22334455566666655544 5666666777777754332222222 12222288899999999999
Q ss_pred cEEEEeCCCcce
Q 002496 252 TVRIWHATTYRL 263 (915)
Q Consensus 252 ~v~iwd~~~~~~ 263 (915)
.+.+||...+..
T Consensus 257 s~~fWd~s~g~~ 268 (993)
T KOG1983|consen 257 SYAFWDVSSGKL 268 (993)
T ss_pred CEEeeecCCCce
Confidence 999999988765
No 451
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.32 E-value=0.35 Score=56.98 Aligned_cols=150 Identities=9% Similarity=-0.004 Sum_probs=80.2
Q ss_pred HHccCHHHHhhhcCCC----Ccch--HHHHHHHHHhCCChhhhhhcc-----cCccce------eeeecccCCHHHHHHH
Q 002496 599 VMRGDLERANEILPSI----PKEH--HNSVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEI 661 (915)
Q Consensus 599 ~~~~~~~~a~~~l~~i----~~~~--~~~~~~~~~~~~~~~~al~~~-----~~~~~~------f~~~l~l~~~~~A~~~ 661 (915)
+..|++.+|..++..+ |... ...+..-....|..+.|++.. .+|+.. -.++.+.|++++|.+.
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 3367777766554433 1111 112222223466777766543 233322 1456677888888777
Q ss_pred HHH-----cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCc----ch---hHHHHHhcCCHHHHHHHHHHHHHcCC-c--
Q 002496 662 ATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL----SG---LLLLYSSLGDAEGISKLASLAKEQGK-N-- 726 (915)
Q Consensus 662 a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~----~~---l~~l~~~~g~~~~~~~l~~~~~~~~~-~-- 726 (915)
+.+ -++...|..+|..+...|+++.|..+|.+.-.. .. ....+...|+.+......+.+..... .
T Consensus 133 l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 133 AEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 654 234667888888888888888888888755211 10 11234456665554444333322211 1
Q ss_pred ---hHHHHHHHHcCCHHHHHHHHHH
Q 002496 727 ---NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 727 ---~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
...+.++...|++++|++.|.+
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223455567777777766543
No 452
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=0.46 Score=55.68 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=86.0
Q ss_pred EEEEEEecCCCCEEEE--EECCCcEEEEECCCCCCce-----EE------ecCCCCeeEEEEEeCCCcCEEEEEeCCCeE
Q 002496 145 VMQVTFNPKDTNTFAS--ASLDRTIKIWNLGSPDPNF-----TL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~--~~~dg~i~v~d~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
+..+..++ |....++ .+.+-.|..||++...... .+ ........++.|.|.-.. ..++...|+.|
T Consensus 103 i~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl 180 (1405)
T KOG3630|consen 103 IVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSL 180 (1405)
T ss_pred ceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccch
Confidence 44444455 4433333 3334468889986532111 11 112234467788886543 46667788888
Q ss_pred EEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec----CCccEEEEEEecCCCEE
Q 002496 212 KVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRI 286 (915)
Q Consensus 212 ~iwd~~~~~-~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l 286 (915)
++..+.... .+..+. .....++++|+|.|+.++.|-.+|++.-|... ++....+.. ...+|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 887765322 222222 45568999999999999999999999988744 332222221 14689999998877666
Q ss_pred EE
Q 002496 287 VI 288 (915)
Q Consensus 287 ~~ 288 (915)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 65
No 453
>PHA02790 Kelch-like protein; Provisional
Probab=94.29 E-value=1.8 Score=48.95 Aligned_cols=181 Identities=9% Similarity=0.075 Sum_probs=84.4
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC--CeEEEEECCCC-eeEEEEe
Q 002496 68 RKQWVVAGADDM-----FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD--MLIKLWDWEKG-WMCTQIF 138 (915)
Q Consensus 68 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~ 138 (915)
++..+++|+.++ .+..||..+++....-.-..... .+++ .-++...++|+.+ ..+..||..++ |.....+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455667777542 56778877755433221111111 1222 2356666677653 35788887654 2222222
Q ss_pred ecCCccEEEEEEecCCCCEEEEEECCC---cEEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEEEeCCCeEEE
Q 002496 139 EGHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 139 ~~~~~~i~~~~~~p~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
....... +++.. ++.+.++|+.++ .+..||..+.+-... .....+ -.+++ ..++. +.+.| |.+.+
T Consensus 350 ~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~-~~~~~--IYv~G---G~~e~ 419 (480)
T PHA02790 350 LKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCAL-VFGRR--LFLVG---RNAEF 419 (480)
T ss_pred CCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEE-EECCE--EEEEC---CceEE
Confidence 2111111 22222 677888887654 467788765432111 101111 11222 22333 45555 35778
Q ss_pred EECCCCcEEEE--ecCCccCeEEEEEeCCCCEEEEEEcC-----CcEEEEeCCCc
Q 002496 214 WDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (915)
Q Consensus 214 wd~~~~~~~~~--~~~~~~~i~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 261 (915)
||..+++-... +....... +++. -++++.++||.+ ..+..||..+.
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 88876553321 21111122 2222 355677777754 23555555443
No 454
>PHA02790 Kelch-like protein; Provisional
Probab=94.29 E-value=1.7 Score=49.11 Aligned_cols=143 Identities=9% Similarity=-0.062 Sum_probs=68.2
Q ss_pred CCeEEEEEcCC-----cEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCceeEEEecCC
Q 002496 27 EPWILASLYSG-----TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVKVFEAHT 99 (915)
Q Consensus 27 ~~~la~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~ 99 (915)
+..+++|+.++ .+..||..+++....-.............-++...++|+.+ ..+..||..+++....-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 44556666432 47778877764332211111111111123467777788754 357778876554332211111
Q ss_pred CCEEEEEEcCCCCEEEEEEcCC---eEEEEECCCCeeEEEE--eecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002496 100 DYIRCVAVHPTLPYVLSSSDDM---LIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~ 174 (915)
.........-+|+..++|+.++ .+..||..++ ..... +.........+.+ ++.+.+.| |.+.+||..+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALVF---GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEEE---CCEEEEEC---CceEEecCCC
Confidence 1111111222566666776543 4678888765 22221 1111111112222 56666666 4577888866
Q ss_pred CC
Q 002496 175 PD 176 (915)
Q Consensus 175 ~~ 176 (915)
++
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 54
No 455
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.27 E-value=9.7 Score=41.34 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=77.4
Q ss_pred CEEEEEEeCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002496 59 PVRSAKFVARKQWVVAGA-----------DDM-FIRVYNYNT--MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.......+.+++.+++ |++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 456789999998776643 223 677776432 22 234444344556889999988 444554433
Q ss_pred EEEEECCCC-------eeEEEEeec----CCccEEEEEEecCCCCEEEEEECC-------------------CcEEEEEC
Q 002496 123 IKLWDWEKG-------WMCTQIFEG----HSHYVMQVTFNPKDTNTFASASLD-------------------RTIKIWNL 172 (915)
Q Consensus 123 i~iwd~~~~-------~~~~~~~~~----~~~~i~~~~~~p~~~~~l~~~~~d-------------------g~i~v~d~ 172 (915)
.++.|.+.. ..+...+.. +.+....+.|.| ++.+.++-+.. |.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 334454321 112222222 234577899999 77766654421 44555565
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002496 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
.+++. ..+...-.....++|++.++ ++++
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~--l~~t 200 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGD--VFFC 200 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCC--EEEE
Confidence 54432 22322234456788988776 4444
No 456
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.09 E-value=0.3 Score=55.96 Aligned_cols=105 Identities=29% Similarity=0.412 Sum_probs=66.1
Q ss_pred HccCHHHHhhhcCCCCc-ch-----HHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHH-----HcCCh
Q 002496 600 MRGDLERANEILPSIPK-EH-----HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIAT-----EVQSE 668 (915)
Q Consensus 600 ~~~~~~~a~~~l~~i~~-~~-----~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~-----~~~~~ 668 (915)
.+|++++|..++..|-. .. +..++..++++|..+.++ .... .-.+.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l-----------------------~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKAL-----------------------NFWLLAAHLNPKDY 207 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHH-----------------------HHHHHHHhcCCCCh
Confidence 37888888776533211 11 234445555555555554 3332 23457
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 002496 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM 735 (915)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~ 735 (915)
..|..||+++.+.|+++.|.-||.|+=.+ .-.+...+.+-+.+..+.|+...|..++.+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 89999999999999999999999986322 223344455556666666666666666544
No 457
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.09 E-value=0.64 Score=54.84 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=25.0
Q ss_pred cccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh----HHHHHHHcC
Q 002496 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM----AEGCMKQAM 695 (915)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~----A~~~y~~~~ 695 (915)
+.+|++++|.+..+.. ++...+..||..+...|+++. |+.+|.++-
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 3456666666555431 234455566666666666654 555555543
No 458
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.04 E-value=0.23 Score=51.63 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHH----HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHH
Q 002496 671 WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEG----ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLL 746 (915)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~----~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~ 746 (915)
..+.|..+-..++++.|.+||.++. .+|...++... ....+.+.... +...|..+ +++|+++|
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa------~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~------~~~A~~~y 104 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA------DCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC------YEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH------HHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH------HHHHHHHH
Confidence 4667777777888888888887753 33444444221 12222222222 33333333 36677777
Q ss_pred HHCCCchHHHH----HHHhcCCc--hHHHHHHHHHHhhh
Q 002496 747 VESNRIPEAAL----MARSYLPS--KVSEIVAIWRKDLQ 779 (915)
Q Consensus 747 ~~~~~~~~A~~----~ar~~~~~--~~~~~~~~w~~~L~ 779 (915)
.+.|++..|+. +++-|... .....++.|.+++.
T Consensus 105 ~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777753 44444443 55666666666553
No 459
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.94 E-value=0.42 Score=46.53 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=52.3
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHH-HHHhcCC--HHHHHHHHHHHHHcCC-chH----
Q 002496 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLL-LYSSLGD--AEGISKLASLAKEQGK-NNV---- 728 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~-l~~~~g~--~~~~~~l~~~~~~~~~-~~~---- 728 (915)
-++...|..||..++..++++.|..+|.++-.+. .+.. +|...|+ .+....+.+.+...+- +..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 4668899999999999999999999999886442 2222 2344454 2333333333333332 222
Q ss_pred HHHHHHHcCCHHHHHHHHHHC
Q 002496 729 AFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 729 a~~~~~~~g~~~~a~~l~~~~ 749 (915)
-+.+++..|++++|+..|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 223445567777777776643
No 460
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.86 E-value=18 Score=43.03 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=104.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeeEEEEeecCC-c------cEEEEEEec---------------CCCCEEEEEECCCcEE
Q 002496 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-H------YVMQVTFNP---------------KDTNTFASASLDRTIK 168 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~------~i~~~~~~p---------------~~~~~l~~~~~dg~i~ 168 (915)
+..|++++.++.|.-.|..+++..-+.-.... . ....+.+.. .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45777888888888888888743322211110 0 012233321 0234788888999999
Q ss_pred EEECCCCCCceEEecCCCCee-------------EEEEEeCCCcCEEEEEeC----------CCeEEEEECCCCcEEEEe
Q 002496 169 IWNLGSPDPNFTLDAHQKGVN-------------CVDYFTGGDKPYLITGSD----------DHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 169 v~d~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 225 (915)
-.|..+++.+..+.. .+.+. .+.-.|-=.+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 11110 001111000114666643 688999999999998876
Q ss_pred cCC---------c--------cCe-EEEEEeCCCCEEEEEE------------------cCCcEEEEeCCCcceeeeeec
Q 002496 226 EGH---------T--------HNV-SAVCFHPELPIIITGS------------------EDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 226 ~~~---------~--------~~i-~~i~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~~ 269 (915)
..- . ..+ ...++.++..+++.+. ..++|.-.|..||+....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 521 0 011 2345555555444422 124567778889998887776
Q ss_pred CCccEEEEE---------Eec-CCC---EEEEEecCCeEEE
Q 002496 270 GLERVWAIG---------YMK-SSR---RIVIGYDEGTIMV 297 (915)
Q Consensus 270 ~~~~v~~i~---------~~~-~~~---~l~~~~~dg~v~i 297 (915)
....+|... +.. +|+ .++.++.+|.+.+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~v 473 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYV 473 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEE
Confidence 433333321 222 342 5666777776665
No 461
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.67 E-value=0.68 Score=57.51 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=67.6
Q ss_pred HHHHHHhCCChhhhhhcccC-----ccce-----eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh
Q 002496 622 VARFLESRGMIEEAIEVATD-----PDYR-----FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM 686 (915)
Q Consensus 622 ~~~~~~~~~~~~~al~~~~~-----~~~~-----f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~ 686 (915)
+...+...|.+++|+..... |... .......|++++|.+..... ++...+..+|..+...|+++.
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 34445556666666554322 1111 13445677777777666542 345677778888888888888
Q ss_pred HHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCchH----HHHHHHHcCCHHHHHHHHHH
Q 002496 687 AEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGKNNV----AFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 687 A~~~y~~~~d~--------~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~----a~~~~~~~g~~~~a~~l~~~ 748 (915)
|.++|.++-.. ..+..+|...|+...+..+.+.......... -+.++...|++++|+++|.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888776422 2445556666663322222222222222211 12234445666666665543
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.60 E-value=12 Score=39.96 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---eEEEe----cCCCCEEEEEEcCC---CCEEEEEEcC--------
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKVFE----AHTDYIRCVAVHPT---LPYVLSSSDD-------- 120 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~l~~~~~d-------- 120 (915)
..+.|+|.|+|+.+++ ...|.|++++ ..+.. +..+. ........++++|+ ..+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999876665 5699999999 44443 22221 23456889999994 3445444331
Q ss_pred -CeEEEEECCCC-------eeEEEEeec---CCccEEEEEEecCCCCEEEEEECC-------------CcEEEEECCCCC
Q 002496 121 -MLIKLWDWEKG-------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLD-------------RTIKIWNLGSPD 176 (915)
Q Consensus 121 -g~i~iwd~~~~-------~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~d-------------g~i~v~d~~~~~ 176 (915)
..|.-|....+ ..+...... ..+.-..+.|.| ++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24554544332 111112222 345567799999 77666665543 234444432210
Q ss_pred ------------CceEEecCCCCeeEEEEEeC-CCcCEEEEE--eCCCeEEEEECCCC----------------------
Q 002496 177 ------------PNFTLDAHQKGVNCVDYFTG-GDKPYLITG--SDDHTAKVWDYQTK---------------------- 219 (915)
Q Consensus 177 ------------~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~--~~dg~i~iwd~~~~---------------------- 219 (915)
....+...-.....++|.|. +. |.++ +.++.=.|--+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~---l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR---LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE---EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCc---EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 11112111223457888887 43 3333 22222222111111
Q ss_pred -------cEEEEecCCccCeEEEEEeCC-------CCEEEEEEcCCcEEEEeCCCccee---ee-eecCCccEEEEEEec
Q 002496 220 -------SCVQTLEGHTHNVSAVCFHPE-------LPIIITGSEDGTVRIWHATTYRLE---NT-LNYGLERVWAIGYMK 281 (915)
Q Consensus 220 -------~~~~~~~~~~~~i~~i~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~~---~~-~~~~~~~v~~i~~~~ 281 (915)
.++..+..| ..++.+.|.+. |.++++.-..+.|....+.....+ .. +.....++..+++.|
T Consensus 237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 122233323 45666776643 335555544567777776544322 12 222334899999999
Q ss_pred CCCEEEEEecCCeEE
Q 002496 282 SSRRIVIGYDEGTIM 296 (915)
Q Consensus 282 ~~~~l~~~~~dg~v~ 296 (915)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 998888877777764
No 463
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.54 E-value=0.71 Score=46.07 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=32.6
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002496 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
+...|++++|.+..++. .+...|..+|..+...|+++.|+++|.++-
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566666666665432 335677788888888888888888888764
No 464
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.35 E-value=0.65 Score=57.73 Aligned_cols=75 Identities=25% Similarity=0.343 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCChhhhhhcccC-----ccc---e---eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCC
Q 002496 620 NSVARFLESRGMIEEAIEVATD-----PDY---R---FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~~-----~~~---~---f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (915)
..++..+...|..++|+..... |.. . -..+...|++++|.++.+.. .++..|..+|..+...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3445555666676666654322 111 1 13455677888887777643 346678888888888888
Q ss_pred hhhHHHHHHHc
Q 002496 684 LEMAEGCMKQA 694 (915)
Q Consensus 684 ~~~A~~~y~~~ 694 (915)
++.|..+|.++
T Consensus 617 ~~~A~~~~~~~ 627 (899)
T TIGR02917 617 LNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 465
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.31 E-value=4.4 Score=44.00 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=76.4
Q ss_pred CCEEEEEEcCCCCeEEEEE-----------cCC-cEEEEECCC--Cce--eEEEEecCCCEEEEEEeCCCCEEEEEeCCC
Q 002496 16 ERVKSVDLHPSEPWILASL-----------YSG-TVCIWNYQS--QTM--AKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 16 ~~V~~v~~sp~~~~la~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~~dg 79 (915)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-...+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4578899999999665532 223 788886443 332 23343333456889999998 44444444
Q ss_pred eEEEEECCCC-----ceeEE---Eec----CCCCEEEEEEcCCCCEEEEEEcC-------------------CeEEEEEC
Q 002496 80 FIRVYNYNTM-----DKVKV---FEA----HTDYIRCVAVHPTLPYVLSSSDD-------------------MLIKLWDW 128 (915)
Q Consensus 80 ~i~vwd~~~~-----~~~~~---~~~----~~~~i~~l~~s~~~~~l~~~~~d-------------------g~i~iwd~ 128 (915)
..++.+.+.. +.... +.. +......+.|.|+|.+.++-+.. |.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344321 22112 222 12347789999999765544421 34555555
Q ss_pred CCCeeEEEEeecCCccEEEEEEecCCCCEEEE
Q 002496 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+++ .......++ .....++|+| +++++++
T Consensus 172 dg~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~t 200 (367)
T TIGR02604 172 DGG-KLRVVAHGF-QNPYGHSVDS-WGDVFFC 200 (367)
T ss_pred CCC-eEEEEecCc-CCCccceECC-CCCEEEE
Confidence 554 222222222 2345777877 6666654
No 466
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.22 E-value=0.59 Score=48.93 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=101.9
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchH--------H-HHHHHHHhCCChhh-------hhhcccCccce----eeeecccCC
Q 002496 595 YKTLVMRGDLERANEILPSIPKEHH--------N-SVARFLESRGMIEE-------AIEVATDPDYR----FELAIQLGR 654 (915)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~i~~~~~--------~-~~~~~~~~~~~~~~-------al~~~~~~~~~----f~~~l~l~~ 654 (915)
-...+.+||++.|.++|+.....-. + .+-+|++.-..+-+ |+...+-..+. =..+...|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 3455668899998888754432211 1 12355554333333 43332222111 156678899
Q ss_pred HHHHHHHHHHc-CC----hhHHHHHHHHHHHcCChhhHHHHHHHcC---------------------CcchhHHHHHh--
Q 002496 655 LEVAQEIATEV-QS----ESKWKQLGELAMSTGKLEMAEGCMKQAM---------------------DLSGLLLLYSS-- 706 (915)
Q Consensus 655 ~~~A~~~a~~~-~~----~~~w~~la~~al~~~~~~~A~~~y~~~~---------------------d~~~l~~l~~~-- 706 (915)
++.|.+..++. .+ .+..-.+|-.|...|+++.|..||.+.. |-..++.+|..
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 99999998753 22 2233467888999999999999998764 22222333332
Q ss_pred ---cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCC--------HHHHHHHHHHCCCchHHHH
Q 002496 707 ---LGDAEGISKLASLAKEQGKNNVAFLCLFMLGK--------LEDCLQLLVESNRIPEAAL 757 (915)
Q Consensus 707 ---~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~--------~~~a~~l~~~~~~~~~A~~ 757 (915)
-.|+.-+.+|+++-.++|+-..||.|+.-.=+ ++=-..+|+++.-|++|+.
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 45666778899999999999999998643211 2444567778887888774
No 467
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.16 E-value=11 Score=38.30 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECC-------CCceeEEEEe-----cCCCEEEEEEeCCCCE------------EE
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ-------SQTMAKSFEV-----TELPVRSAKFVARKQW------------VV 73 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~-------~~~~~~~~~~-----~~~~v~~l~~s~~~~~------------l~ 73 (915)
-+.|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4789999999876666668899999986 1223333332 1345778888754333 67
Q ss_pred EEeCCCeEEEEECCCCce-----eEEEe-cCCCC-EEEEEEcC--CCCEEEEE-EcCCeEEEEECCCCeeEEEE---eec
Q 002496 74 AGADDMFIRVYNYNTMDK-----VKVFE-AHTDY-IRCVAVHP--TLPYVLSS-SDDMLIKLWDWEKGWMCTQI---FEG 140 (915)
Q Consensus 74 ~~~~dg~i~vwd~~~~~~-----~~~~~-~~~~~-i~~l~~s~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~ 140 (915)
.+++||+|.-|+..-+.. ...+. ...+. -..+++-. .+.+|..+ -..++|.++|-.=. .... +..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCccC
Confidence 788999999998532211 12222 11222 33455543 34555544 35688888874422 1111 000
Q ss_pred ----------------CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCC----C
Q 002496 141 ----------------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGG----D 198 (915)
Q Consensus 141 ----------------~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~----~ 198 (915)
..-.|+-..-.+ +.+.=+.|..-|.|-+||+. ++.++++. +.-...+.++..|.. .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000111111112 11222233345789999974 55566553 222345667765532 1
Q ss_pred cCEEEEEeCCCeEEEEECCCCcEEEEecCCcc------CeEEEEEeC
Q 002496 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHP 239 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~i~~~~ 239 (915)
+.+|+--..||+|..||..+++.+-.+....+ .++.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 22666667899999999999988777765433 356777765
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=1.6 Score=46.14 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=90.3
Q ss_pred EEEEcCCCCeEEEEEcCCcEEEEECCCC--ceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE---
Q 002496 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--- 93 (915)
Q Consensus 20 ~v~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--- 93 (915)
.+-|...++.|.+ ..+|.+.=|-++.. ...-++. ...++|.++.||+|++.||+--.++.|.+++....+...
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3445444444443 33455666654332 2222332 356799999999999999999999999999984333221
Q ss_pred -EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeecCCccEEEEEEecCCCCEEEEEE
Q 002496 94 -VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 94 -~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
..+..+..|....|+.+ .-++..+..| +-+|.........+..+.|+..|.-..|.+ +.+.+..++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeec
Confidence 22233456899999976 4566666655 677776655455666677888888889998 666554443
No 469
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.00 E-value=0.091 Score=59.52 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=68.7
Q ss_pred hhcccCCCCEEEEEEcC-CCCeEEEEEcCCcEEEEECC--CCceeEEEEe-----cCCCEEEEEEeC---CCCEEEEEeC
Q 002496 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQ--SQTMAKSFEV-----TELPVRSAKFVA---RKQWVVAGAD 77 (915)
Q Consensus 9 ~~l~~h~~~V~~v~~sp-~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~-----~~~~v~~l~~s~---~~~~l~~~~~ 77 (915)
..++|.++.|-.+.|-. +-+.++ -.-|...||++. .|++...+.. -..++.-+.|.| +..++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34557777787787743 223333 234678899875 3544443332 233445556654 6778888888
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEE-----------cCCCCEEEEEEcCCeEEEEE
Q 002496 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-----------HPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-----------s~~~~~l~~~~~dg~i~iwd 127 (915)
++.|++.++++... ..+.+|...+..++| ||||..++..+.||.++.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 99999888775433 445557776666554 45555555555555554443
No 470
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.99 E-value=3.1 Score=47.40 Aligned_cols=102 Identities=10% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEeCCCeEEEEECC-----C----CcEEEE
Q 002496 155 TNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-----T----KSCVQT 224 (915)
Q Consensus 155 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~----~~~~~~ 224 (915)
+...++.+...++.|||.+.+.....-. .....|..++|...+++..+++.+..+.|.+|.-. + ..+++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 3333444445579999998876433322 35788999999988777788888889999998531 1 123333
Q ss_pred e--cCCc-cCeEEEEEeCCCCEEEEEEcCCcEEEEeC
Q 002496 225 L--EGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 225 ~--~~~~-~~i~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
+ ..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 3 2333 679999999999655443 447888873
No 471
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.86 E-value=26 Score=41.76 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCEEEEEEcCCC------CeEEEEEcCCcEEEEECCCCceeEEEEe--cCCCEEEEEEeC---CCC------EEEEEeC
Q 002496 15 SERVKSVDLHPSE------PWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVA---RKQ------WVVAGAD 77 (915)
Q Consensus 15 ~~~V~~v~~sp~~------~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~s~---~~~------~l~~~~~ 77 (915)
+..|.|+++.++. ++++.|+.|+.++++.+.....+..+.. -..++.++.+-+ ++. +|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568899998876 4799999999999999887766666553 344455555433 332 4567777
Q ss_pred CCeEEEE
Q 002496 78 DMFIRVY 84 (915)
Q Consensus 78 dg~i~vw 84 (915)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=3.2 Score=43.97 Aligned_cols=129 Identities=8% Similarity=-0.006 Sum_probs=79.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCC--ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE---EEeecC
Q 002496 68 RKQWVVAGADDMFIRVYNYNTM--DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT---QIFEGH 141 (915)
Q Consensus 68 ~~~~l~~~~~dg~i~vwd~~~~--~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~ 141 (915)
|.+..+.+...|.+.=|-++.. .....+ ....++|.++.||+|.+.|++--.+.+|.+++........ ......
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 3333334444455555544321 112222 2346799999999999999999999999999884431111 122233
Q ss_pred CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCc
Q 002496 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
+..|...+|+. +.-++..+..| +-+|-....+ ..+..+.+...|+-..|+++..-
T Consensus 112 ~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 112 NANILGFCWTS--STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred cceeEEEEEec--CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 45588899985 45566655444 5666554332 33444667888888889888763
No 473
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.82 E-value=1.2 Score=46.20 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=10.6
Q ss_pred HHHHHHHHHCCCchHHHHHHH
Q 002496 740 EDCLQLLVESNRIPEAALMAR 760 (915)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~~ar 760 (915)
.++..++.+.+++++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 345555555555555554443
No 474
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.76 E-value=9.8 Score=36.69 Aligned_cols=102 Identities=15% Similarity=0.290 Sum_probs=65.1
Q ss_pred CeEEEEEcCCcEEEEECC--CCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---C---eEEEE-ECCCC----ceeE-
Q 002496 28 PWILASLYSGTVCIWNYQ--SQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---M---FIRVY-NYNTM----DKVK- 93 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~d---g---~i~vw-d~~~~----~~~~- 93 (915)
..|.++...+.|.+|++. ..+....|..- +.|..+.++..|++|++--.+ . .+|+| |+... +++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999988 33555666644 789999999999999986332 2 67776 33211 1111
Q ss_pred --------------------EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002496 94 --------------------VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 94 --------------------~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.++ .-..++.+++..|-...|++|+.+ .+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEE
Confidence 111 123356778877755557777664 7899987654
No 475
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.68 E-value=0.37 Score=52.73 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred ccCCHHHHHHHHHHcC---C--hhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002496 651 QLGRLEVAQEIATEVQ---S--ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~---~--~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
..|++.+|.....+.- . .-.|..||-....+|++-.|.+.|.++
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 4566666666543211 1 124555555555555555554444443
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.67 E-value=15 Score=38.55 Aligned_cols=230 Identities=12% Similarity=0.083 Sum_probs=114.8
Q ss_pred CCeEEEEEcCCcEEEEECCC--CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCce------------
Q 002496 27 EPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK------------ 91 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~~-dg~i~vwd~~~~~~------------ 91 (915)
+++|+.|+.+| +.+.+... ++..+.+ +..+|+++...+.-+.|++-+. ...++++++.....
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999998 45555554 2333333 4568999999998887766553 44699999843221
Q ss_pred ---eEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCeeEEEEee-------cCCccEEEEEEecC-CCCEEE
Q 002496 92 ---VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK-DTNTFA 159 (915)
Q Consensus 92 ---~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~p~-~~~~l~ 159 (915)
....-.|........+... ...++++....+|.++.+.........+. ....++..+..++. ....++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0111133332332333321 12334455556777775543211111111 11123333333331 245777
Q ss_pred EEECCCcEEEEECCC--CCCce-----EEecCC-CCeeEEEEEeCCCcCEEEEEeCCCeEEEEECCCC-cEE--EEecCC
Q 002496 160 SASLDRTIKIWNLGS--PDPNF-----TLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCV--QTLEGH 228 (915)
Q Consensus 160 ~~~~dg~i~v~d~~~--~~~~~-----~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~ 228 (915)
.|+..+...++++.. ..+.. ...... .++..... +++ -++.+.++. ..+.|.. | +.. ..+. -
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~---e~Llc~~~~-~v~Vn~~-G~~~~r~~~l~-w 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD---EFLLCYDEF-GVFVNLY-GKRRSRNPILH-W 242 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC---eEEEEECcE-EEEEeCC-CCccccceEEE-c
Confidence 777653344444432 11100 011111 33333333 333 244444443 4444544 3 221 1222 2
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCcEEEEeCCCcceeeeeec
Q 002496 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 229 ~~~i~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
.....++++.. ++|++-+. ..|.++++.++..++++..
T Consensus 243 ~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 34456777764 57776664 4599999999998887764
No 477
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.63 E-value=1.1 Score=57.19 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=64.8
Q ss_pred HHHHHhCCChhhhhhcccC-ccce---e---eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHH
Q 002496 623 ARFLESRGMIEEAIEVATD-PDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 623 ~~~~~~~~~~~~al~~~~~-~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
+..+...|..++|+.+... |... + .++.+.|++++|.+..+.. ++...|..||..+...|+++.|+++
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445667888888776532 2221 1 5567889999999988743 4578999999999999999999999
Q ss_pred HHHcCCcc--------hhHHHHHhcCCHHHHHHHHH
Q 002496 691 MKQAMDLS--------GLLLLYSSLGDAEGISKLAS 718 (915)
Q Consensus 691 y~~~~d~~--------~l~~l~~~~g~~~~~~~l~~ 718 (915)
|.++-... .+..++...|+.+....+.+
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99765321 23334445555444443333
No 478
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.39 E-value=1.4 Score=35.03 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002496 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
..+..+|..+...|+++.|..+|.++ +.+....|+ .-..++.. ....+.++...|++++|+++|.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~~~~~~-----~~~~~a~~---~~~lg~~~~~~g~~~~A~~~~~- 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA------LDIEEQLGD-----DHPDTANT---LNNLGECYYRLGDYEEALEYYQ- 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHHHTTT-----HHHHHHHH---HHHHHHHHHHTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHHCC-----CCHHHHHH---HHHHHHHHHHcCCHHHHHHHHH-
Q ss_pred CCCchHHHHHHHh
Q 002496 749 SNRIPEAALMARS 761 (915)
Q Consensus 749 ~~~~~~A~~~ar~ 761 (915)
+|+.+++.
T Consensus 71 -----~al~i~~k 78 (78)
T PF13424_consen 71 -----KALDIFEK 78 (78)
T ss_dssp -----HHHHHHHH
T ss_pred -----HHHhhhcC
No 479
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.32 E-value=2.1 Score=52.51 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHcC----ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----hhHHHHHhc---CCHHHHHHHHH
Q 002496 651 QLGRLEVAQEIATEVQ----SESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----GLLLLYSSL---GDAEGISKLAS 718 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~----~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----~l~~l~~~~---g~~~~~~~l~~ 718 (915)
+.|++++|....+++. ....|..+|..++..|+++.|+.+|.++-... -...++... |+.+......+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6777777777765432 23456777777888888888888877654331 111122223 66555444433
Q ss_pred HHHHcCC----chHHHHHHHHcCCHHHHHH
Q 002496 719 LAKEQGK----NNVAFLCLFMLGKLEDCLQ 744 (915)
Q Consensus 719 ~~~~~~~----~~~a~~~~~~~g~~~~a~~ 744 (915)
.+....- ....+.++..+|++++|+.
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3332221 1112344555677766665
No 480
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.16 E-value=1 Score=55.01 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHc----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002496 653 GRLEVAQEIATEV----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 653 ~~~~~A~~~a~~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
|++++|....++. ++...|..+|..+...|+++.|+.+|.++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666665554421 23455556666666666666666666554
No 481
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.10 E-value=5.5 Score=45.48 Aligned_cols=111 Identities=13% Similarity=0.100 Sum_probs=71.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEc--CCCCEEEEEEcCCeEEEEECC------
Q 002496 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWE------ 129 (915)
Q Consensus 59 ~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s--~~~~~l~~~~~dg~i~iwd~~------ 129 (915)
...-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.+....|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555555555556689999998876433322 457789999996 588888888888899998531
Q ss_pred C--CeeEEEE--eecCC-ccEEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002496 130 K--GWMCTQI--FEGHS-HYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 130 ~--~~~~~~~--~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~ 172 (915)
. .+..... +..|+ ++|.+..|.+ ++. +++|+ +..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~-LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGT-LVVGS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEec-CCe-EEEEe-CCEEEEECC
Confidence 1 1122221 23333 6789999997 554 44444 356777763
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.10 E-value=0.53 Score=52.86 Aligned_cols=96 Identities=16% Similarity=0.025 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHH-----HHcC-CchHHHHHHHHcCCHH
Q 002496 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLA-----KEQG-KNNVAFLCLFMLGKLE 740 (915)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~-----~~~~-~~~~a~~~~~~~g~~~ 740 (915)
+..+....|.++...|.+..|..+|..++.+....-+..+....+ +...|+.. .... ..+.+-....++.+..
T Consensus 934 ~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~ 1012 (1243)
T COG5290 934 DNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENLY 1012 (1243)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHH
Confidence 344566778888889999999999999999988776666655433 44333332 1222 2333444567789999
Q ss_pred HHHHHHHHCCCchHHHHHHHhcC
Q 002496 741 DCLQLLVESNRIPEAALMARSYL 763 (915)
Q Consensus 741 ~a~~l~~~~~~~~~A~~~ar~~~ 763 (915)
+|+.++++..++.+|+..|+.-+
T Consensus 1013 eava~~ckgs~y~ea~~~a~~s~ 1035 (1243)
T COG5290 1013 EAVAMDCKGSEYREAFCEAMVSR 1035 (1243)
T ss_pred HHHHHHcccccchHHHHHHHHhh
Confidence 99999999999999998777643
No 483
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.10 E-value=0.66 Score=31.49 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCC---CeEEEEEcCCcEEEEECCCC
Q 002496 16 ERVKSVDLHPSE---PWILASLYSGTVCIWNYQSQ 47 (915)
Q Consensus 16 ~~V~~v~~sp~~---~~la~~~~dg~v~iwd~~~~ 47 (915)
+.|.+|.|||.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888999999999853
No 484
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=9.1 Score=36.35 Aligned_cols=173 Identities=10% Similarity=0.029 Sum_probs=91.5
Q ss_pred CCeEEEEEc--CCcEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002496 27 EPWILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 27 ~~~la~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
|.++.+.+. ...|++||+.+|+.+.+-+.....+..=-...-|+.+. -...+|.-.++|.++.+.+..+.- .+.=+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcce
Confidence 444444443 45699999999988766543322222111112233333 334678889999998888777653 22334
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCee---EEEEeecC-CccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce
Q 002496 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179 (915)
Q Consensus 104 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~ 179 (915)
.++ .|+..|+.++...++..-|.++-.. +.....+. -..+.-+.|- ++...+-.-.+..|...+..+|+...
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 444 3555677776666777777654311 11122111 1123334444 34444444444445455555554333
Q ss_pred EE------------ecCCCCeeEEEEEeCCCcCEEEEE
Q 002496 180 TL------------DAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 180 ~~------------~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+ ..+..-.+.+++.|.+++ ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence 22 123445678888887764 56655
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.94 E-value=27 Score=39.90 Aligned_cols=282 Identities=13% Similarity=0.186 Sum_probs=133.2
Q ss_pred CCCEEEEEEcCCCCeEEEEEcCCcEEEEECCC----C-ceeEEEE---ecCCCEEEEEEeC-----CCCEEEEE--eCCC
Q 002496 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS----Q-TMAKSFE---VTELPVRSAKFVA-----RKQWVVAG--ADDM 79 (915)
Q Consensus 15 ~~~V~~v~~sp~~~~la~~~~dg~v~iwd~~~----~-~~~~~~~---~~~~~v~~l~~s~-----~~~~l~~~--~~dg 79 (915)
...-..++.+|.|+.++++...|.+.||-++. + .....+. ...+.|..++|-. +...+++- ...+
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 34466799999999999999999999999877 1 1111111 1256788899985 23344432 2222
Q ss_pred --eEEEEECCCCceeEE----------E-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE-CCC--C-eeEEEEee---
Q 002496 80 --FIRVYNYNTMDKVKV----------F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEK--G-WMCTQIFE--- 139 (915)
Q Consensus 80 --~i~vwd~~~~~~~~~----------~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd-~~~--~-~~~~~~~~--- 139 (915)
.+..|.+.....+.. + ..+..+..-+........+++++.. +.+|. ... + ......-.
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~--~i~y~~~~~~~~~~~~~~~~~~~~ 200 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGEN--IIIYKNHLIGSGDYSFLSIPSPPS 200 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEESS--EEEEEE------TTEEEEE--H-H
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECCE--EEEEecccccccccccccccCCcc
Confidence 344444222211111 1 0111222222222223335555443 33343 111 1 11111111
Q ss_pred cCCccEEEEEE------ecCCCCEEEEEECCCcEEEEECCCCCC--ceEEecC-CCCeeEEEEEeCCCcCEEEEEeCCC-
Q 002496 140 GHSHYVMQVTF------NPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDH- 209 (915)
Q Consensus 140 ~~~~~i~~~~~------~p~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg- 209 (915)
....-+.+..+ ...++..++.+..+|.+....+..... ....-+. .....++.+..++ ..+++.|+.-|
T Consensus 201 ~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs~~gd 279 (504)
T PF10433_consen 201 SSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-GDYLFVGSEFGD 279 (504)
T ss_dssp HHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT---EEEEEESSS-
T ss_pred CCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEEecCC
Confidence 11222333332 234678899999999998887754331 1111122 4556778887776 33688887654
Q ss_pred -eEEEEECCCCcEEEEecCCccCeEEEEEeCC----CC------EEEEEE---cCCcEEEEeCCCcc---eeeeeecC-C
Q 002496 210 -TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE----LP------IIITGS---EDGTVRIWHATTYR---LENTLNYG-L 271 (915)
Q Consensus 210 -~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~----~~------~l~~~~---~dg~v~iwd~~~~~---~~~~~~~~-~ 271 (915)
.+..|....-+.+..+. .-++|..+++.+. .. .|++++ .+|.+++..-.-+- ........ .
T Consensus 280 s~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v 358 (504)
T PF10433_consen 280 SQLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGV 358 (504)
T ss_dssp EEEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTE
T ss_pred cEEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCc
Confidence 45555544344555555 5578888888632 11 455544 56788887532111 11111111 2
Q ss_pred ccEEEEEEec-CCCEEEEEecCCeEEEecC
Q 002496 272 ERVWAIGYMK-SSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 272 ~~v~~i~~~~-~~~~l~~~~~dg~v~i~~~ 300 (915)
..+|.+.... +..+|+++..+.+..+...
T Consensus 359 ~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 359 TGIWTLKLSSSDHSYLVLSFPNETRVLQIS 388 (504)
T ss_dssp EEEEEE-SSSSSBSEEEEEESSEEEEEEES
T ss_pred eEEEEeeecCCCceEEEEEcCCceEEEEEe
Confidence 4556665433 2578888888888888764
No 486
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.91 E-value=24 Score=39.12 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=82.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEE
Q 002496 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~l~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
..+|..+.+...| .+.+|+.|| +..||..+++.+..-.... .+|..+.-+-.| .+.+|+.+| |.+.+.++. ...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~-~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGW-RAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhc-ccc
Confidence 4467777887777 467788888 6678888877766544333 566666666555 578888877 677776652 222
Q ss_pred EEeec-CCccEEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec-C--CCCeeEEEEEeCCCcCEEEEEeCCCeE
Q 002496 136 QIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-H--QKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 136 ~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
..... ....|..+.-. ....+..|+..|..+.- +........... + ...|+++....+|. +-+++.+|.+
T Consensus 239 n~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~-l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs---LWv~t~~giv 312 (671)
T COG3292 239 NWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTR-LPRQGLQIPLSKMHLGVSTVNSLWLDTDGS---LWVGTYGGIV 312 (671)
T ss_pred ccCCCCcchheeeeecc--cCCCEEEeecccceeEe-cCCCCccccccccCCccccccceeeccCCC---EeeeccCceE
Confidence 22111 22334433332 34567777777754332 222222222211 1 23344444444444 7778877766
Q ss_pred EEEE
Q 002496 212 KVWD 215 (915)
Q Consensus 212 ~iwd 215 (915)
++-+
T Consensus 313 ~~~~ 316 (671)
T COG3292 313 RYLT 316 (671)
T ss_pred EEec
Confidence 6544
No 487
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.83 E-value=2.8 Score=46.16 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHcCC---cchhHHHHHh--cCCHHHHHHHHHHH-HHcCCchH----HHHHHHHcCCHH
Q 002496 671 WKQLGELAMSTGKLEMAEGCMKQAMD---LSGLLLLYSS--LGDAEGISKLASLA-KEQGKNNV----AFLCLFMLGKLE 740 (915)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~~~d---~~~l~~l~~~--~g~~~~~~~l~~~~-~~~~~~~~----a~~~~~~~g~~~ 740 (915)
+-.+|..+...|+.+.|++...++-. ...+..+|.. .++.+...+.++.. ....+... -+.+++..|+++
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 33446666667777777666655432 2233334443 35544433333322 22222211 234455566677
Q ss_pred HHHHHHHHC
Q 002496 741 DCLQLLVES 749 (915)
Q Consensus 741 ~a~~l~~~~ 749 (915)
+|.+.|.++
T Consensus 346 ~A~~~le~a 354 (398)
T PRK10747 346 EASLAFRAA 354 (398)
T ss_pred HHHHHHHHH
Confidence 776666654
No 488
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.68 E-value=0.31 Score=39.66 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHc----C---ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002496 652 LGRLEVAQEIATEV----Q---SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (915)
Q Consensus 652 l~~~~~A~~~a~~~----~---~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~ 724 (915)
.|+++.|..++.++ + +...|-.+|..+.+.|+++.|...+.+ ..... . -....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~-------~~~~~---- 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------S-------NPDIH---- 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------C-------HHHHH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------C-------CHHHH----
Confidence 35667776666532 2 345788899999999999999777766 11100 0 00111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002496 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+ +.+.|++.+|++++|++.|.+
T Consensus 62 -~-l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 -Y-LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -H-HHHHHHHHTT-HHHHHHHHHH
T ss_pred -H-HHHHHHHHhCCHHHHHHHHhc
Confidence 2 236788899999999999875
No 489
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.53 E-value=2.1 Score=41.38 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc----hhHH----HHHhcCCHHHHHHHHHHHHHc-
Q 002496 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS----GLLL----LYSSLGDAEGISKLASLAKEQ- 723 (915)
Q Consensus 653 ~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~----~l~~----l~~~~g~~~~~~~l~~~~~~~- 723 (915)
.++++|++... +....|-.+|.++...|+.+.|.+.|.++-... .++. ..+..|.++.-+..-+.|...
T Consensus 56 ~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 56 KNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 34555555432 346689999999999999999999999874221 1111 123455666555554555332
Q ss_pred ------CCchHHHHHHHHcCCHHHHHHHHHHC-----CCchHHHHHHHhcC
Q 002496 724 ------GKNNVAFLCLFMLGKLEDCLQLLVES-----NRIPEAALMARSYL 763 (915)
Q Consensus 724 ------~~~~~a~~~~~~~g~~~~a~~l~~~~-----~~~~~A~~~ar~~~ 763 (915)
+-+.=++.|+++.|+++.|.++|.++ +.+.-.++|++.+.
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 33455788999999999999988765 44555557777653
No 490
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.53 E-value=0.58 Score=48.69 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCc-----------chhHHHHHhcCCHHHHHHHHHHHHHcC------------
Q 002496 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDL-----------SGLLLLYSSLGDAEGISKLASLAKEQG------------ 724 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~-----------~~l~~l~~~~g~~~~~~~l~~~~~~~~------------ 724 (915)
....+.||+.++..|+++.|.+||.|++|| -.++++....||...|......|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 345688999999999999999999998887 356677777888887766655555441
Q ss_pred -CchHHHHHHHHcCCHHHHHHHHHHCC
Q 002496 725 -KNNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 725 -~~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
-.-.|+.+.+.+++|+.|++.|+...
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12346677777899999999998654
No 491
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.52 E-value=9.3 Score=33.69 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCeEEEEEcCCcEEEEECC--------CCceeEEEEecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEE
Q 002496 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ--------SQTMAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVY 84 (915)
Q Consensus 18 V~~v~~sp~~~~la~~~~dg~v~iwd~~--------~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~~~dg~i~vw 84 (915)
|..-.|....+.|++++..|+|.|++.. ....+..+. -...|++++-.+ +...|+.|+... |..|
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~-llaY 78 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTS-LLAY 78 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccce-EEEE
Q ss_pred ECCCCceeEEEecCCC--CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCeeEEEEeec
Q 002496 85 NYNTMDKVKVFEAHTD--YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~--~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
|+....-+..-.-+.+ .|..-.+.....-++..+.+..|.-+|.+.. ...-...+
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~-e~fWtVtg 135 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN-EIFWTVTG 135 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc-EEEEEecc
No 492
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.37 E-value=2 Score=39.26 Aligned_cols=80 Identities=18% Similarity=0.026 Sum_probs=48.9
Q ss_pred eecccCCHHHHHHHHHH-----cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002496 648 LAIQLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (915)
Q Consensus 648 ~~l~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~ 722 (915)
.+.+.|++++|...++. ..+...|..+|..+...|+++.|..+|.++-.. ..++++..
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~--------- 95 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPV--------- 95 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHH---------
Confidence 34577777777776653 234667777787788888888887777764322 12222212
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHH
Q 002496 723 QGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 723 ~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
...+.++..+|++++|+..|.+
T Consensus 96 ----~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 96 ----YQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHH
Confidence 1223455567788888777753
No 493
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.20 E-value=0.88 Score=47.39 Aligned_cols=101 Identities=24% Similarity=0.224 Sum_probs=23.4
Q ss_pred eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc----C---CcchhHHHHHhcCCHHHHH
Q 002496 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA----M---DLSGLLLLYSSLGDAEGIS 714 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~----~---d~~~l~~l~~~~g~~~~~~ 714 (915)
.++..+++++.|.+..+++ .++.....|+.. +..++++.|.+++.++ + -+..++.+|...++.+.+.
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence 4555666666666665532 234456666666 6777777776655443 2 2234445566677766666
Q ss_pred HHHHHHHHcCCc-------hHHHHHHHHcCCHHHHHHHHHH
Q 002496 715 KLASLAKEQGKN-------NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 715 ~l~~~~~~~~~~-------~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
.+.+.+...... ...+.++...|+.++|+.+|.+
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555544332211 1233445556777777766654
No 494
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.01 E-value=0.31 Score=37.28 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=37.2
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002496 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+++.|++++|.++.+.+ .+...|..+|..+...|+++.|...|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35778888888888753 34779999999999999999999888875
No 495
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.77 E-value=9.2 Score=44.21 Aligned_cols=144 Identities=13% Similarity=0.168 Sum_probs=90.2
Q ss_pred CCeEEEEEcCCcEEEEECCCCceeE------EEEe----------------cCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002496 27 EPWILASLYSGTVCIWNYQSQTMAK------SFEV----------------TELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~------~~~~----------------~~~~v~~l~~s~--~~~~l~~~~~dg~i~ 82 (915)
+++|.+|. .+.|.||+...-.... .+.. ....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777765 7899999976432211 1100 111244443332 456788999999999
Q ss_pred EEECCC-------C----c---------eeEEEecCCCCEEEEEEc--CCCCEEEEEEcCCeEEEEECCCC--eeEEEEe
Q 002496 83 VYNYNT-------M----D---------KVKVFEAHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWEKG--WMCTQIF 138 (915)
Q Consensus 83 vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 138 (915)
+|.+++ . + +-..+ .-....++++++ ...++||+++....|.||-.... +.....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997521 0 0 01111 124468999998 77888999988888888865432 1111111
Q ss_pred ecCCccEEEEEEecCC--CC---EEEEEECCCcEEEEEC
Q 002496 139 EGHSHYVMQVTFNPKD--TN---TFASASLDRTIKIWNL 172 (915)
Q Consensus 139 ~~~~~~i~~~~~~p~~--~~---~l~~~~~dg~i~v~d~ 172 (915)
..+.+-|-+++|.+.+ +. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356678899998733 22 7888899999999887
No 496
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.74 E-value=1.2 Score=30.21 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCC
Q 002496 100 DYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 100 ~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~ 131 (915)
+.|+++.|||.. .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888888899999999964
No 497
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.74 E-value=42 Score=40.52 Aligned_cols=160 Identities=10% Similarity=0.162 Sum_probs=101.8
Q ss_pred cCCCCEEEEEEc---C----CCCeEEEEEcCCcEEEEEC------CCC---------ceeEEEEe---cCCCEEEEEEeC
Q 002496 13 QRSERVKSVDLH---P----SEPWILASLYSGTVCIWNY------QSQ---------TMAKSFEV---TELPVRSAKFVA 67 (915)
Q Consensus 13 ~h~~~V~~v~~s---p----~~~~la~~~~dg~v~iwd~------~~~---------~~~~~~~~---~~~~v~~l~~s~ 67 (915)
.-..+|..|+|. . ...+|++-. ...+.|+.. ... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 3 224666654 556777771 111 23333432 234678899998
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC----------CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002496 68 R-KQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT----------DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 68 ~-~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~----------~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
. ...||+....|...||++..+. .......+. +.-..+.|.++-+.|++++.. .+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCC
Confidence 4 5689999999999999992111 111111112 223478898888888888775 6899999987
Q ss_pred eeEE-EEeecCCccEEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002496 132 WMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 132 ~~~~-~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v~d~~~~ 175 (915)
+... -........|..+.-+|.+.++++.-+ ...|...++...
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 5433 233345577888888884445554443 367777777653
No 498
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.72 E-value=17 Score=35.18 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=38.3
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEeCCC--cceeeeeecCCccEEEEEEecCCCEEEEEe
Q 002496 234 AVCFHPELPIIITGSEDGTVRIWHATT--YRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (915)
.++..+. ..|+.+...+.|.+|++.+ .+...++..- +.|..+.++..|++|++--
T Consensus 22 ~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 22 AVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred eeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 3444432 3454446677899999883 3455666555 8899999999999999843
No 499
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.68 E-value=2.3 Score=51.38 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=57.1
Q ss_pred HHccCHHHHhhhcCCCCcch-------HHHHHHHHHhCCChhhhhhcc-----cCccc----------eeeeecccCCHH
Q 002496 599 VMRGDLERANEILPSIPKEH-------HNSVARFLESRGMIEEAIEVA-----TDPDY----------RFELAIQLGRLE 656 (915)
Q Consensus 599 ~~~~~~~~a~~~l~~i~~~~-------~~~~~~~~~~~~~~~~al~~~-----~~~~~----------~f~~~l~l~~~~ 656 (915)
+.++.+.+|...+..+.... ...++..+...|.+++|+... .+|.. .+...++.|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 44666777665544433221 122455666677777776642 22211 122446778888
Q ss_pred HHHHHHHHcCCh--------------------hHHHHHHHHHHHcCChhhHHHHHHHc
Q 002496 657 VAQEIATEVQSE--------------------SKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 657 ~A~~~a~~~~~~--------------------~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+|.+.+..+... .....+|......|+++.|+++|.++
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888886643221 23456788888888888888887764
No 500
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.67 E-value=1.8 Score=43.13 Aligned_cols=97 Identities=24% Similarity=0.244 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHH-----cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHH
Q 002496 652 LGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLAS 718 (915)
Q Consensus 652 l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~l~~ 718 (915)
.|++++|.+...+ ..+...|..+|..+...|+++.|.++|.++-... .+..+|...|+.+......+
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3444444444432 2346688899999999999999999998775332 23344555666555444444
Q ss_pred HHHHcCC-------chHHHHHHHHcCCHHHHHHHHHH
Q 002496 719 LAKEQGK-------NNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 719 ~~~~~~~-------~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
.+..... ....+.++...|++++|+++|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 124 QAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4332211 11123445556666666666654
Done!