BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002497
(915 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Query: 534 DPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKD 593
D K +QN++I L + + E+ +LE N L ++++L+K P E+ + + E K+
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 594 ESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSR 653
E L +E+F + +P R++A+L+ F +VE +K ++ AC ELRKS
Sbjct: 163 EYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 221
Query: 654 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQ 707
F LLE L GN MN G+ A F AD K TLLHF+ +
Sbjct: 222 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 275
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Query: 534 DPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKD 593
D K +QN++I L + + E+ +LE N L ++++L+K P E+ + + E K+
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 594 ESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSR 653
E L +E+F + +P R++A+L+ F +VE +K ++ AC ELRKS
Sbjct: 73 EYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 131
Query: 654 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQ 707
F LLE L GN MN G+ A F AD K TLLHF+ +
Sbjct: 132 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 1/174 (0%)
Query: 534 DPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKD 593
D K +QN++I L + + E+ +LE N L ++++L+K P E+ + + E K+
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 594 ESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSR 653
E L +E+F + +P R++A+L+ F +VE +K ++ AC ELRKS
Sbjct: 144 EYD-DLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSE 202
Query: 654 MFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQ 707
F LLE L GN MN G+ A F AD K TLLHF+ +
Sbjct: 203 NFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 256
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 3/176 (1%)
Query: 532 VLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEF 591
+L+ +++N+AI LR + +E+C + + TL + +E L++ PT+ E + ++++
Sbjct: 86 LLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQY 145
Query: 592 KDE-SPF-KLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGEL 649
+ E P +L ++F+ ++ +R+ M ++ NF ++ L + A +
Sbjct: 146 ERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASV 205
Query: 650 RKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFV 705
+ S+ ++LE +L GN MN + RG + F D K TLLHF+
Sbjct: 206 KSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFI 260
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 19/265 (7%)
Query: 459 KSEETPRP--KLKPLHWDKVRASSDRAMVWDQFK-SGSFQ-LNEEMIETLFT-------- 506
K + P+P LK +W K+ + VW + + F+ L+ E +E F+
Sbjct: 6 KKKSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDF 65
Query: 507 -VNNSNLNSKDNGRKQVLS--VPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGN 563
VN+++ + + LS + +E V+D +++QN ILL L ++ DE+ +L +
Sbjct: 66 FVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMD 125
Query: 564 -SDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAM 622
+ L ++LE LLK P K + ++E K E ++ A++FL + I +R+ ++
Sbjct: 126 EQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELD-RMAKADRFLFEMSRINHYQQRLQSL 184
Query: 623 LYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFX 682
+ F V +K E ++ E+ +S +LLE VL GN MN G RG+A+ F
Sbjct: 185 YFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFK 243
Query: 683 XXXXXXXXXXXGA-DGKTTLLHFVV 706
+ D TLLH+++
Sbjct: 244 ISSLNKIADTKSSIDKNITLLHYLI 268
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 19/265 (7%)
Query: 459 KSEETPRPK--LKPLHWDKVRASSDRAMVWDQFK-SGSFQ-LNEEMIETLFT-------- 506
K + P+P LK +W K+ + VW + + F+ L+ E +E F+
Sbjct: 4 KKKSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDF 63
Query: 507 -VNNSNLNSKDNGRKQVLS--VPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGN 563
VN+++ + + LS + +E V+D +++QN ILL L ++ DE+ +L +
Sbjct: 64 FVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMD 123
Query: 564 -SDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAM 622
+ L ++LE LLK P K + ++E K E ++ A++FL + I +R+ ++
Sbjct: 124 EQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELD-RMAKADRFLFEMSRINHYQQRLQSL 182
Query: 623 LYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFX 682
+ F V +K E ++ E+ +S +LLE VL GN MN G RG+A+ F
Sbjct: 183 YFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFK 241
Query: 683 XXXXXXXXXXXGA-DGKTTLLHFVV 706
+ D TLLH+++
Sbjct: 242 ISSLNKIADTKSSIDKNITLLHYLI 266
>pdb|3R07|A Chain A, Structural Analysis Of An Archaeal Lipoylation System. A
Bi-Partite Lipoate Protein Ligase And Its E2 Lipoyl
Domain From Thermoplasma Acidophilum
Length = 285
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 522 VLSVPNQENRVLDPKKS-QNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAP 580
VL VP+++ R K + + +A + ++V++DEV L+ G S+TL + E +
Sbjct: 199 VLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTI---- 254
Query: 581 TKEEERKIKEFKDE 594
T++EE +E D+
Sbjct: 255 TEKEESLARELFDK 268
>pdb|2ART|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A Bound With
Lipoyl-Amp
pdb|2ARU|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A Bound With
Atp
pdb|2C7I|A Chain A, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|B Chain B, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|C Chain C, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C7I|D Chain D, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum.
pdb|2C8M|A Chain A, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|B Chain B, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|C Chain C, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
pdb|2C8M|D Chain D, Structure Of Protein Ta0514, Putative Lipoate Protein
Ligase From T. Acidophilum With Bound Lipoic Acid
Length = 262
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 522 VLSVPNQENRVLDPKKS-QNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAP 580
VL VP+++ R K + + +A + ++V++DEV L+ G S+TL + E +
Sbjct: 176 VLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTI---- 231
Query: 581 TKEEERKIKEFKDE 594
T++EE +E D+
Sbjct: 232 TEKEESLARELFDK 245
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute
With A Guide Rna
Length = 1046
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 483 AMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKKSQNIA 542
+VWD FK S Q N ++ +N K G LS+ N N++L K+S N+
Sbjct: 714 CVVWDNFKKNSIQYNSNVV--------MKMNLKLLGSNHSLSIEN--NKLLIDKES-NLP 762
Query: 543 ILLRALNVT 551
IL+ +VT
Sbjct: 763 ILVLGSDVT 771
>pdb|2ARS|A Chain A, Crystal Structure Of Lipoate-Protein Ligase A From
Thermoplasma Acidophilum
Length = 262
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 522 VLSVPNQENRVLDPKKS-QNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAP 580
VL VP+++ R K + + +A + ++V++DEV L+ G S+TL + E +
Sbjct: 176 VLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTI---- 231
Query: 581 TKEEERKIKEFKDE 594
T++EE +E D+
Sbjct: 232 TEKEESLARELFDK 245
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 115/281 (40%), Gaps = 41/281 (14%)
Query: 461 EETPRP--KLKPLHWDKVRASSDRAMVWDQFKSGSF--QLNEEMI----ETLFTVNNSNL 512
E+ PRP KLK LHW+K+ + + +W K+ F L E+ + E F +
Sbjct: 23 EKYPRPHKKLKQLHWEKLDCTDNS--IWGTGKAEKFADDLYEKGVLADLEKAFAAR--EI 78
Query: 513 NSKDNGRKQVLSVPNQENRVLDPKKSQNIAILLRAL-NVTVDEVCEGLLEGNSDTLG--- 568
S + RK+ L Q+ L SQ I L +++V ++ + +L + D L
Sbjct: 79 KSLASKRKEDL----QKITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPS 134
Query: 569 -------AELLESLLKM----APTKEEERKIKEFKDESPFKLGP------AEKFLRAVLE 611
+E++E + + AP + ++ +D P + P + +L+ ++
Sbjct: 135 VVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVN 194
Query: 612 I-PFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMN 670
+ + R+ A+ + +++ E L + A L++S + +L GN MN
Sbjct: 195 LESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMN 254
Query: 671 VGTNRGDAHAFXXXXXXXXXXXXGADGKTTLLHFVVQEIIR 711
+ + A F T L++ V++I+R
Sbjct: 255 DTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNY-VEKIVR 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,691,879
Number of Sequences: 62578
Number of extensions: 657257
Number of successful extensions: 1282
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 14
length of query: 915
length of database: 14,973,337
effective HSP length: 108
effective length of query: 807
effective length of database: 8,214,913
effective search space: 6629434791
effective search space used: 6629434791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)