Query 002497
Match_columns 915
No_of_seqs 268 out of 1083
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00498 FH2 Formin Homology 100.0 1.9E-70 4.1E-75 626.6 37.9 374 461-872 3-379 (432)
2 KOG1924 RhoA GTPase effector D 100.0 6.4E-70 1.4E-74 619.2 40.6 376 460-872 618-998 (1102)
3 PF02181 FH2: Formin Homology 100.0 7.2E-67 1.6E-71 585.1 33.2 366 460-864 3-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 8.9E-54 1.9E-58 524.3 40.3 401 462-881 390-797 (833)
5 KOG1923 Rac1 GTPase effector F 100.0 1.2E-49 2.5E-54 457.5 31.3 366 460-871 363-734 (830)
6 KOG1925 Rac1 GTPase effector F 100.0 5.1E-45 1.1E-49 401.0 35.5 395 462-903 278-701 (817)
7 KOG1924 RhoA GTPase effector D 99.0 7.6E-08 1.6E-12 113.3 24.1 51 637-694 749-799 (1102)
8 smart00498 FH2 Formin Homology 98.0 1.9E-05 4.2E-10 91.7 10.3 117 755-871 315-432 (432)
9 KOG1922 Rho GTPase effector BN 96.4 2.5 5.4E-05 53.7 30.2 33 639-671 620-652 (833)
10 PHA03247 large tegument protei 96.2 7.8 0.00017 53.6 33.2 9 481-489 3024-3032(3151)
11 KOG3671 Actin regulatory prote 95.4 0.062 1.3E-06 62.5 9.2 29 462-490 475-503 (569)
12 PHA03247 large tegument protei 95.3 21 0.00044 49.9 37.0 13 638-650 3110-3122(3151)
13 KOG3671 Actin regulatory prote 94.9 0.09 2E-06 61.2 8.9 7 428-434 426-432 (569)
14 PF08374 Protocadherin: Protoc 93.8 0.14 3E-06 54.2 6.6 19 125-144 36-54 (221)
15 PF08693 SKG6: Transmembrane a 93.7 0.0045 9.8E-08 48.8 -3.4 27 129-156 13-39 (40)
16 TIGR01478 STEVOR variant surfa 91.5 0.17 3.7E-06 55.5 3.8 23 133-157 266-288 (295)
17 PTZ00370 STEVOR; Provisional 91.3 0.19 4E-06 55.4 3.8 23 133-157 262-284 (296)
18 KOG1923 Rac1 GTPase effector F 89.2 1 2.3E-05 55.2 7.9 28 647-674 558-585 (830)
19 KOG0994 Extracellular matrix g 89.2 15 0.00033 47.3 17.7 17 656-672 1471-1487(1758)
20 PF15102 TMEM154: TMEM154 prot 88.3 0.22 4.7E-06 50.0 1.3 54 106-160 35-89 (146)
21 KOG0994 Extracellular matrix g 86.4 40 0.00088 43.8 19.0 12 537-548 1472-1483(1758)
22 KOG1962 B-cell receptor-associ 85.7 37 0.00081 36.6 16.1 54 810-881 160-213 (216)
23 PF01299 Lamp: Lysosome-associ 84.9 0.54 1.2E-05 52.6 2.3 32 126-158 270-301 (306)
24 PF01102 Glycophorin_A: Glycop 84.7 1.2 2.5E-05 43.8 4.1 26 133-159 70-95 (122)
25 KOG1830 Wiskott Aldrich syndro 82.0 5.8 0.00013 46.0 8.8 7 542-548 466-472 (518)
26 KOG4849 mRNA cleavage factor I 81.7 1.1E+02 0.0023 35.3 18.5 18 494-511 355-372 (498)
27 PF12325 TMF_TATA_bd: TATA ele 81.6 34 0.00073 33.7 12.8 52 810-865 63-114 (120)
28 PF08336 P4Ha_N: Prolyl 4-Hydr 80.4 14 0.00031 36.4 10.0 70 799-872 13-82 (134)
29 KOG2460 Signal recognition par 79.6 78 0.0017 38.3 17.0 67 806-872 420-487 (593)
30 PF14610 DUF4448: Protein of u 79.1 0.44 9.5E-06 49.7 -1.1 31 129-160 158-188 (189)
31 PHA03246 large tegument protei 78.8 2.6E+02 0.0056 39.8 22.7 162 629-843 1647-1812(3095)
32 PF06679 DUF1180: Protein of u 78.6 20 0.00043 37.1 10.6 7 147-153 112-118 (163)
33 cd07606 BAR_SFC_plant The Bin/ 78.6 86 0.0019 33.5 15.8 41 626-666 4-49 (202)
34 KOG4672 Uncharacterized conser 77.6 82 0.0018 36.9 15.9 12 549-560 469-480 (487)
35 PF03114 BAR: BAR domain; Int 76.3 14 0.0003 38.1 9.1 24 628-651 24-47 (229)
36 KOG0804 Cytoplasmic Zn-finger 76.0 24 0.00052 41.5 11.4 91 745-839 360-452 (493)
37 PF12273 RCR: Chitin synthesis 75.5 2.1 4.6E-05 42.0 2.6 12 148-159 18-29 (130)
38 KOG3091 Nuclear pore complex, 75.5 1.3E+02 0.0029 36.0 17.3 15 609-623 333-347 (508)
39 PRK10132 hypothetical protein; 72.6 31 0.00066 33.4 9.5 74 766-843 14-87 (108)
40 cd07593 BAR_MUG137_fungi The B 70.4 23 0.0005 38.1 9.1 57 811-874 145-205 (215)
41 PF14991 MLANA: Protein melan- 70.2 0.82 1.8E-05 44.0 -1.6 41 132-177 28-68 (118)
42 PF05278 PEARLI-4: Arabidopsis 69.8 51 0.0011 36.7 11.7 40 800-839 199-238 (269)
43 PF06013 WXG100: Proteins of 1 69.3 56 0.0012 28.2 10.0 63 805-873 8-70 (86)
44 PF06365 CD34_antigen: CD34/Po 68.1 8.8 0.00019 40.9 5.3 34 127-161 101-134 (202)
45 PRK10404 hypothetical protein; 67.5 46 0.001 31.7 9.5 72 767-842 8-80 (101)
46 COG1579 Zn-ribbon protein, pos 66.0 1.1E+02 0.0023 33.8 13.0 77 762-838 50-126 (239)
47 PF04478 Mid2: Mid2 like cell 65.6 0.63 1.4E-05 47.1 -3.5 32 129-160 50-81 (154)
48 PTZ00382 Variant-specific surf 65.5 1 2.3E-05 42.3 -1.9 8 146-153 84-91 (96)
49 KOG2391 Vacuolar sorting prote 65.1 85 0.0018 36.0 12.3 27 613-639 300-326 (365)
50 cd07664 BAR_SNX2 The Bin/Amphi 64.2 1.7E+02 0.0037 31.9 14.3 66 805-876 163-228 (234)
51 PRK11637 AmiB activator; Provi 63.2 2E+02 0.0043 33.9 15.8 24 628-651 94-117 (428)
52 PF09325 Vps5: Vps5 C terminal 62.9 2.1E+02 0.0045 30.3 14.7 66 805-876 167-232 (236)
53 cd07637 BAR_ACAP3 The Bin/Amph 62.3 2.2E+02 0.0048 30.4 18.5 28 625-652 4-31 (200)
54 KOG3771 Amphiphysin [Intracell 62.0 1.4E+02 0.0031 35.6 13.8 29 812-840 161-190 (460)
55 KOG3617 WD40 and TPR repeat-co 61.8 4.6E+02 0.01 33.9 20.7 225 600-876 1122-1359(1416)
56 PHA03291 envelope glycoprotein 61.2 53 0.0012 37.7 9.9 31 129-160 289-321 (401)
57 PF01034 Syndecan: Syndecan do 60.2 2.8 6.1E-05 36.7 -0.1 11 143-153 25-35 (64)
58 COG5178 PRP8 U5 snRNP spliceos 60.0 6.8 0.00015 50.2 3.0 9 650-658 633-641 (2365)
59 cd07667 BAR_SNX30 The Bin/Amph 60.0 63 0.0014 35.5 10.0 14 649-662 4-17 (240)
60 COG5185 HEC1 Protein involved 59.7 3.8E+02 0.0083 32.3 19.7 74 754-836 355-428 (622)
61 PF03999 MAP65_ASE1: Microtubu 58.7 7.5 0.00016 47.9 3.2 38 804-841 282-319 (619)
62 PF06120 Phage_HK97_TLTM: Tail 58.5 1.7E+02 0.0036 33.3 13.3 38 750-787 52-90 (301)
63 PF05957 DUF883: Bacterial pro 58.3 96 0.0021 28.6 9.7 71 768-842 2-73 (94)
64 PRK15319 AIDA autotransporter- 57.6 13 0.00029 50.1 5.2 9 483-491 1762-1770(2039)
65 cd07637 BAR_ACAP3 The Bin/Amph 57.0 71 0.0015 34.1 9.7 21 856-876 103-123 (200)
66 PHA03265 envelope glycoprotein 56.8 4.8 0.0001 45.7 1.0 32 129-161 350-382 (402)
67 PF05278 PEARLI-4: Arabidopsis 56.8 1.7E+02 0.0038 32.6 12.8 77 751-838 154-230 (269)
68 PF04728 LPP: Lipoprotein leuc 56.6 85 0.0019 27.0 8.1 23 766-788 5-27 (56)
69 PF05454 DAG1: Dystroglycan (D 56.4 3.7 7.9E-05 46.0 0.0 15 237-251 223-237 (290)
70 PF02439 Adeno_E3_CR2: Adenovi 56.2 18 0.0004 28.6 3.7 13 146-158 20-34 (38)
71 PRK11637 AmiB activator; Provi 55.9 1.7E+02 0.0037 34.4 13.6 33 804-836 99-131 (428)
72 cd07617 BAR_Endophilin_B2 The 55.6 3.1E+02 0.0067 29.9 16.0 61 811-874 157-217 (220)
73 PF02009 Rifin_STEVOR: Rifin/s 55.5 12 0.00027 42.1 3.9 12 143-154 272-283 (299)
74 PF14575 EphA2_TM: Ephrin type 54.9 7.8 0.00017 34.9 1.8 9 148-156 20-28 (75)
75 PF08580 KAR9: Yeast cortical 54.7 2.2E+02 0.0048 35.9 14.8 61 810-876 237-298 (683)
76 PF11932 DUF3450: Protein of u 54.5 1.4E+02 0.003 32.5 11.8 73 753-834 31-103 (251)
77 cd07604 BAR_ASAPs The Bin/Amph 54.4 3.1E+02 0.0067 29.6 14.5 43 627-669 6-53 (215)
78 cd07623 BAR_SNX1_2 The Bin/Amp 54.3 3.1E+02 0.0067 29.5 15.3 66 805-876 153-218 (224)
79 PF10234 Cluap1: Clusterin-ass 54.2 2.9E+02 0.0064 30.9 14.1 31 679-709 106-144 (267)
80 cd07307 BAR The Bin/Amphiphysi 54.0 2.3E+02 0.0049 27.9 19.2 58 810-873 130-187 (194)
81 cd07603 BAR_ACAPs The Bin/Amph 53.4 76 0.0017 33.7 9.2 112 766-878 4-125 (200)
82 PF10805 DUF2730: Protein of u 52.4 88 0.0019 29.9 8.6 70 760-836 31-100 (106)
83 cd07595 BAR_RhoGAP_Rich-like T 52.3 2E+02 0.0043 31.6 12.4 29 811-839 161-189 (244)
84 PF14523 Syntaxin_2: Syntaxin- 51.6 1.4E+02 0.003 27.5 9.8 26 799-824 28-53 (102)
85 PF06809 NPDC1: Neural prolife 50.9 39 0.00084 38.3 6.7 18 143-160 213-230 (341)
86 TIGR01167 LPXTG_anchor LPXTG-m 50.8 16 0.00035 27.2 2.7 8 148-155 24-31 (34)
87 PF15120 DUF4561: Domain of un 50.7 52 0.0011 34.2 7.1 64 801-874 24-87 (171)
88 KOG3653 Transforming growth fa 50.6 32 0.00069 41.1 6.3 27 133-159 159-185 (534)
89 PF12768 Rax2: Cortical protei 50.3 12 0.00026 41.8 2.7 26 125-153 226-253 (281)
90 PF12325 TMF_TATA_bd: TATA ele 50.2 2.6E+02 0.0057 27.5 12.4 33 804-836 85-117 (120)
91 smart00503 SynN Syntaxin N-ter 50.1 2.2E+02 0.0048 26.6 12.0 63 768-832 12-74 (117)
92 PF12889 DUF3829: Protein of u 49.9 2.4E+02 0.0051 30.6 12.7 175 569-838 79-272 (276)
93 cd07639 BAR_ACAP1 The Bin/Amph 49.2 2E+02 0.0044 30.8 11.5 22 766-787 4-25 (200)
94 smart00503 SynN Syntaxin N-ter 49.2 2.3E+02 0.0049 26.5 13.6 22 767-788 4-25 (117)
95 KOG2391 Vacuolar sorting prote 49.2 1.5E+02 0.0032 34.1 10.9 41 803-843 269-314 (365)
96 KOG0963 Transcription factor/C 48.8 2.6E+02 0.0056 34.7 13.4 108 763-875 14-128 (629)
97 PF08114 PMP1_2: ATPase proteo 48.2 7.3 0.00016 31.2 0.5 27 129-159 11-37 (43)
98 PF04420 CHD5: CHD5-like prote 48.1 62 0.0013 33.2 7.3 65 768-838 37-103 (161)
99 PF10456 BAR_3_WASP_bdg: WASP- 47.9 2.8E+02 0.0062 30.4 12.7 58 771-828 176-233 (237)
100 PF12252 SidE: Dot/Icm substra 47.8 3.4E+02 0.0075 35.7 14.6 30 812-841 1319-1348(1439)
101 KOG2129 Uncharacterized conser 47.7 80 0.0017 37.0 8.6 51 814-864 291-341 (552)
102 KOG0995 Centromere-associated 47.6 6.3E+02 0.014 31.2 16.2 25 803-827 505-529 (581)
103 PF06008 Laminin_I: Laminin Do 47.5 2.5E+02 0.0054 30.8 12.4 20 821-840 152-171 (264)
104 PF12191 stn_TNFRSF12A: Tumour 47.5 5.7 0.00012 39.1 -0.2 11 148-158 97-107 (129)
105 PF14316 DUF4381: Domain of un 47.0 22 0.00048 35.6 3.8 16 112-127 6-23 (146)
106 cd07627 BAR_Vps5p The Bin/Amph 46.5 3.9E+02 0.0085 28.5 16.9 66 805-876 147-212 (216)
107 cd00179 SynN Syntaxin N-termin 46.4 3E+02 0.0064 27.1 12.0 32 800-831 40-71 (151)
108 COG3889 Predicted solute bindi 46.4 23 0.00051 44.2 4.5 13 143-155 859-871 (872)
109 PRK09039 hypothetical protein; 46.0 1.4E+02 0.003 34.4 10.5 41 751-791 121-164 (343)
110 cd07606 BAR_SFC_plant The Bin/ 46.0 2.9E+02 0.0063 29.5 12.2 21 856-876 105-125 (202)
111 cd07588 BAR_Amphiphysin The Bi 45.6 2.5E+02 0.0053 30.3 11.6 14 799-812 49-62 (211)
112 PF08700 Vps51: Vps51/Vps67; 45.6 2.2E+02 0.0049 25.4 9.9 62 763-836 18-79 (87)
113 PF05615 THOC7: Tho complex su 45.4 2.2E+02 0.0048 28.1 10.6 69 767-837 49-117 (139)
114 PF04740 LXG: LXG domain of WX 45.1 3.8E+02 0.0082 27.9 13.7 41 799-839 44-85 (204)
115 PF01690 PLRV_ORF5: Potato lea 44.7 18 0.0004 42.8 3.2 14 273-286 222-235 (465)
116 PF05667 DUF812: Protein of un 44.6 2.6E+02 0.0057 34.7 13.0 73 800-876 393-469 (594)
117 PF06013 WXG100: Proteins of 1 44.1 2.1E+02 0.0045 24.6 11.1 24 798-821 45-68 (86)
118 PTZ00208 65 kDa invariant surf 44.1 13 0.00029 43.1 1.9 36 122-159 381-417 (436)
119 PF03915 AIP3: Actin interacti 44.0 1.9E+02 0.004 34.5 11.2 34 807-840 291-324 (424)
120 KOG3054 Uncharacterized conser 43.5 45 0.00098 36.5 5.6 26 133-158 4-30 (299)
121 KOG1830 Wiskott Aldrich syndro 43.1 1.3E+02 0.0029 35.4 9.5 6 35-40 299-304 (518)
122 PF07200 Mod_r: Modifier of ru 42.7 2.6E+02 0.0056 27.9 10.7 45 818-873 99-143 (150)
123 PF04156 IncA: IncA protein; 42.7 2.2E+02 0.0049 29.3 10.6 28 808-835 123-150 (191)
124 cd07601 BAR_APPL The Bin/Amphi 42.5 3.5E+02 0.0076 29.3 12.2 108 763-876 1-127 (215)
125 PF05377 FlaC_arch: Flagella a 42.5 1.1E+02 0.0024 26.3 6.6 18 768-785 4-21 (55)
126 PF15330 SIT: SHP2-interacting 41.9 26 0.00056 33.8 3.2 19 143-161 13-32 (107)
127 KOG4482 Sarcoglycan complex, a 41.8 33 0.00072 39.6 4.5 40 125-165 295-334 (449)
128 cd07651 F-BAR_PombeCdc15_like 41.5 1.8E+02 0.0039 31.3 10.1 69 803-872 152-229 (236)
129 PHA03246 large tegument protei 41.3 3E+02 0.0065 39.2 13.3 76 766-841 1869-1951(3095)
130 KOG2675 Adenylate cyclase-asso 41.2 25 0.00055 41.2 3.5 13 597-609 455-467 (480)
131 cd07594 BAR_Endophilin_B The B 40.8 4.2E+02 0.0091 28.9 12.6 167 626-840 20-224 (229)
132 PF10158 LOH1CR12: Tumour supp 40.7 2.9E+02 0.0062 27.7 10.4 18 817-834 89-106 (131)
133 PF11770 GAPT: GRB2-binding ad 40.6 9.7 0.00021 38.6 0.1 25 129-153 10-34 (158)
134 PF06008 Laminin_I: Laminin Do 40.3 4.3E+02 0.0094 28.9 12.9 73 762-840 43-115 (264)
135 KOG4403 Cell surface glycoprot 39.9 5.3E+02 0.011 30.8 13.6 30 884-913 430-459 (575)
136 cd07603 BAR_ACAPs The Bin/Amph 39.8 4.9E+02 0.011 27.7 19.1 27 626-652 5-31 (200)
137 KOG0971 Microtubule-associated 39.8 1E+03 0.022 31.3 17.0 22 749-770 958-979 (1243)
138 PF14712 Snapin_Pallidin: Snap 39.1 1.5E+02 0.0033 27.0 7.8 74 800-876 6-79 (92)
139 cd07602 BAR_RhoGAP_OPHN1-like 39.1 5.3E+02 0.011 27.8 14.8 26 626-651 5-30 (207)
140 cd07616 BAR_Endophilin_B1 The 39.0 5.6E+02 0.012 28.1 14.4 43 812-861 167-209 (229)
141 PF10265 DUF2217: Uncharacteri 38.9 56 0.0012 39.5 6.0 22 636-657 296-317 (514)
142 PF10226 DUF2216: Uncharacteri 38.8 4.6E+02 0.01 28.0 11.8 38 804-841 104-144 (195)
143 COG4575 ElaB Uncharacterized c 38.6 2.8E+02 0.006 26.9 9.4 72 767-842 11-83 (104)
144 cd07665 BAR_SNX1 The Bin/Amphi 38.5 5.7E+02 0.012 28.0 14.8 70 800-876 159-228 (234)
145 KOG4673 Transcription factor T 38.4 7.2E+02 0.016 31.4 14.9 52 815-870 904-955 (961)
146 TIGR00383 corA magnesium Mg(2+ 38.1 2.9E+02 0.0063 30.7 11.4 88 749-836 152-244 (318)
147 PHA02562 46 endonuclease subun 38.0 4.8E+02 0.011 31.4 14.0 34 755-788 204-237 (562)
148 PF10376 Mei5: Double-strand r 37.8 1.8E+02 0.0039 31.6 9.2 44 799-842 169-215 (221)
149 PRK04654 sec-independent trans 37.6 2.6E+02 0.0057 30.2 10.1 20 769-788 32-51 (214)
150 COG3763 Uncharacterized protei 37.6 49 0.0011 29.7 3.9 26 129-155 3-28 (71)
151 KOG1118 Lysophosphatidic acid 37.5 3.8E+02 0.0083 30.7 11.7 12 638-649 41-52 (366)
152 PF08855 DUF1825: Domain of un 37.5 4E+02 0.0087 26.0 11.8 77 765-842 6-86 (108)
153 KOG4302 Microtubule-associated 37.3 4.2E+02 0.009 33.4 13.1 38 797-834 226-263 (660)
154 COG1340 Uncharacterized archae 37.1 3.4E+02 0.0073 30.8 11.3 62 747-813 139-202 (294)
155 KOG1853 LIS1-interacting prote 37.1 2.1E+02 0.0046 31.7 9.4 75 800-878 80-161 (333)
156 PF07544 Med9: RNA polymerase 37.1 2.5E+02 0.0054 25.7 8.7 35 756-790 13-47 (83)
157 TIGR03778 VPDSG_CTERM VPDSG-CT 36.9 39 0.00085 24.7 2.7 14 143-156 12-25 (26)
158 PF03114 BAR: BAR domain; Int 36.7 2.7E+02 0.0058 28.5 10.1 18 856-873 140-157 (229)
159 KOG2140 Uncharacterized conser 36.7 4.3E+02 0.0092 32.5 12.5 147 529-713 440-593 (739)
160 PF03597 CcoS: Cytochrome oxid 36.6 62 0.0013 26.6 4.1 17 146-162 17-34 (45)
161 TIGR00019 prfA peptide chain r 36.5 7.2E+02 0.016 29.1 14.3 62 808-869 75-143 (360)
162 PF10168 Nup88: Nuclear pore c 36.5 6.9E+02 0.015 31.8 15.2 53 810-863 595-648 (717)
163 KOG0995 Centromere-associated 36.5 9.2E+02 0.02 29.9 17.3 36 753-788 318-356 (581)
164 cd07592 BAR_Endophilin_A The B 36.5 5.8E+02 0.013 27.7 12.8 29 813-841 155-183 (223)
165 KOG0810 SNARE protein Syntaxin 36.5 3.1E+02 0.0068 31.1 11.1 43 799-841 73-117 (297)
166 PF05308 Mito_fiss_reg: Mitoch 36.2 51 0.0011 36.4 4.8 13 249-261 25-37 (253)
167 PF07589 VPEP: PEP-CTERM motif 36.0 38 0.00083 24.3 2.5 10 147-156 16-25 (25)
168 COG0249 MutS Mismatch repair A 35.9 1E+03 0.023 30.9 16.8 108 537-650 331-451 (843)
169 PF10458 Val_tRNA-synt_C: Valy 35.9 2.1E+02 0.0046 24.8 7.8 21 769-789 2-22 (66)
170 KOG0971 Microtubule-associated 35.4 1.2E+03 0.025 30.7 18.6 12 684-695 382-393 (1243)
171 cd07615 BAR_Endophilin_A3 The 35.4 6.2E+02 0.014 27.6 14.4 28 814-841 156-183 (223)
172 KOG2211 Predicted Golgi transp 35.3 6.8E+02 0.015 31.6 14.1 60 637-696 149-208 (797)
173 KOG3651 Protein kinase C, alph 35.0 5.9E+02 0.013 29.1 12.5 47 650-707 205-251 (429)
174 PF13949 ALIX_LYPXL_bnd: ALIX 35.0 4.7E+02 0.01 28.7 12.3 47 816-870 242-288 (296)
175 KOG1853 LIS1-interacting prote 34.8 5.4E+02 0.012 28.7 12.0 19 766-784 54-72 (333)
176 PF05337 CSF-1: Macrophage col 34.6 13 0.00028 41.2 0.0 12 143-154 239-250 (285)
177 PF15066 CAGE1: Cancer-associa 34.3 5.3E+02 0.012 31.1 12.6 95 762-861 409-503 (527)
178 KOG2264 Exostosin EXT1L [Signa 33.9 1.6E+02 0.0034 36.0 8.4 35 803-837 116-150 (907)
179 PRK15396 murein lipoprotein; P 33.8 1.9E+02 0.004 26.6 7.2 24 765-788 26-49 (78)
180 cd07591 BAR_Rvs161p The Bin/Am 33.6 6.4E+02 0.014 27.2 13.7 26 810-835 146-171 (224)
181 PF06160 EzrA: Septation ring 33.6 9.9E+02 0.021 29.4 21.6 28 625-652 103-130 (560)
182 PF15254 CCDC14: Coiled-coil d 33.5 3.7E+02 0.008 34.3 11.7 55 736-791 354-414 (861)
183 TIGR03185 DNA_S_dndD DNA sulfu 33.2 4.6E+02 0.01 32.7 13.0 45 743-787 179-225 (650)
184 PF14257 DUF4349: Domain of un 32.9 1.7E+02 0.0037 31.9 8.3 79 762-841 123-204 (262)
185 PF05008 V-SNARE: Vesicle tran 32.9 3.5E+02 0.0075 23.9 9.4 58 767-825 21-78 (79)
186 KOG4360 Uncharacterized coiled 32.7 2.7E+02 0.0059 33.7 10.1 37 804-840 257-293 (596)
187 PF01544 CorA: CorA-like Mg2+ 32.6 5.6E+02 0.012 27.5 12.3 70 766-838 153-222 (292)
188 PF05659 RPW8: Arabidopsis bro 32.6 1.3E+02 0.0027 30.6 6.6 90 570-662 38-133 (147)
189 PF15050 SCIMP: SCIMP protein 32.5 74 0.0016 31.4 4.6 15 127-141 8-22 (133)
190 KOG2185 Predicted RNA-processi 32.3 1.7E+02 0.0037 34.4 8.2 60 765-830 414-473 (486)
191 KOG4500 Rho/Rac GTPase guanine 31.9 43 0.00093 39.6 3.5 61 646-712 320-387 (604)
192 KOG0996 Structural maintenance 31.7 1.2E+03 0.025 31.5 15.9 14 700-713 834-847 (1293)
193 TIGR00847 ccoS cytochrome oxid 31.4 95 0.0021 26.2 4.5 17 146-162 18-35 (51)
194 PF05545 FixQ: Cbb3-type cytoc 31.1 75 0.0016 26.0 3.9 10 146-155 24-33 (49)
195 cd07668 BAR_SNX9 The Bin/Amphi 31.1 4.1E+02 0.009 28.7 10.3 27 819-845 74-100 (210)
196 PHA03286 envelope glycoprotein 31.0 51 0.0011 39.0 3.9 19 143-161 406-425 (492)
197 PRK04778 septation ring format 31.0 4.3E+02 0.0093 32.5 12.1 21 622-642 21-41 (569)
198 PF14968 CCDC84: Coiled coil p 30.9 69 0.0015 36.8 4.9 92 532-623 16-128 (336)
199 cd07663 BAR_SNX5 The Bin/Amphi 30.8 5E+02 0.011 28.3 11.1 70 799-868 21-97 (218)
200 KOG2115 Vacuolar sorting prote 30.8 1.3E+03 0.029 30.1 17.1 57 601-668 266-322 (951)
201 COG4980 GvpP Gas vesicle prote 30.6 3.6E+02 0.0078 26.6 9.0 69 766-834 41-109 (115)
202 PF12877 DUF3827: Domain of un 30.4 37 0.0008 41.8 2.8 34 124-157 266-299 (684)
203 PRK14155 heat shock protein Gr 30.4 6.1E+02 0.013 27.4 11.6 16 824-839 99-114 (208)
204 cd07620 BAR_SH3BP1 The Bin/Amp 30.3 5.5E+02 0.012 28.7 11.4 21 629-649 14-34 (257)
205 COG4046 Uncharacterized protei 30.2 1.7E+02 0.0038 33.4 7.6 46 825-872 72-118 (368)
206 PF09177 Syntaxin-6_N: Syntaxi 30.1 2.3E+02 0.0051 26.3 7.6 54 768-821 43-97 (97)
207 TIGR01010 BexC_CtrB_KpsE polys 30.1 6E+02 0.013 29.0 12.5 69 766-842 172-241 (362)
208 PRK09546 zntB zinc transporter 29.9 4.4E+02 0.0095 29.7 11.2 12 700-711 142-153 (324)
209 COG3352 FlaC Putative archaeal 29.9 3.6E+02 0.0078 27.8 9.1 74 750-831 55-131 (157)
210 PF11593 Med3: Mediator comple 29.8 1.8E+02 0.004 33.8 7.9 58 597-662 59-116 (379)
211 PF02480 Herpes_gE: Alphaherpe 29.7 18 0.00038 43.0 0.0 12 167-178 393-404 (439)
212 cd07599 BAR_Rvs167p The Bin/Am 29.7 7E+02 0.015 26.4 13.8 9 830-838 101-109 (216)
213 PRK04863 mukB cell division pr 29.7 1.3E+03 0.029 32.0 17.0 37 630-666 230-266 (1486)
214 PRK09459 pspG phage shock prot 29.7 1.1E+02 0.0024 27.9 4.8 16 143-158 52-67 (76)
215 PF13908 Shisa: Wnt and FGF in 29.5 76 0.0017 32.7 4.6 12 129-140 80-91 (179)
216 PF12301 CD99L2: CD99 antigen 29.5 57 0.0012 34.0 3.6 30 126-157 114-143 (169)
217 TIGR02677 conserved hypothetic 29.4 1.1E+03 0.024 28.7 17.7 58 813-870 143-207 (494)
218 PF07439 DUF1515: Protein of u 29.3 4E+02 0.0087 26.0 8.8 22 814-835 53-74 (112)
219 KOG0260 RNA polymerase II, lar 29.3 8E+02 0.017 33.1 13.8 12 203-214 1397-1408(1605)
220 cd07666 BAR_SNX7 The Bin/Amphi 29.2 8.2E+02 0.018 27.0 12.7 60 811-876 180-239 (243)
221 PF15234 LAT: Linker for activ 29.1 5.4E+02 0.012 27.4 10.4 15 239-253 67-81 (230)
222 PF05510 Sarcoglycan_2: Sarcog 29.1 45 0.00097 38.9 3.1 35 128-163 286-320 (386)
223 PF10856 DUF2678: Protein of u 29.0 38 0.00082 33.1 2.1 39 111-155 47-85 (118)
224 PRK01844 hypothetical protein; 29.0 83 0.0018 28.4 4.0 24 130-154 4-27 (72)
225 KOG4603 TBP-1 interacting prot 28.9 4.9E+02 0.011 27.4 10.0 74 763-844 115-188 (201)
226 cd07638 BAR_ACAP2 The Bin/Amph 28.8 3.8E+02 0.0082 28.7 9.7 111 763-877 1-113 (200)
227 PRK10361 DNA recombination pro 28.6 5.4E+02 0.012 31.2 11.8 30 806-835 90-119 (475)
228 PF08359 TetR_C_4: YsiA-like p 28.5 1.4E+02 0.003 28.6 6.0 10 857-866 67-76 (133)
229 PF15431 TMEM190: Transmembran 28.5 65 0.0014 31.3 3.5 27 129-155 60-86 (134)
230 PF08429 PLU-1: PLU-1-like pro 28.3 6.5E+02 0.014 28.3 12.2 223 549-839 82-325 (335)
231 PTZ00473 Plasmodium Vir superf 28.1 4.1E+02 0.0089 31.4 10.3 52 816-867 164-215 (420)
232 PF06072 Herpes_US9: Alphaherp 28.0 87 0.0019 27.3 3.8 26 128-153 33-58 (60)
233 PF08580 KAR9: Yeast cortical 28.0 6.1E+02 0.013 32.1 12.7 27 855-881 131-157 (683)
234 PF01153 Glypican: Glypican; 28.0 3.1E+02 0.0066 33.8 10.0 57 800-856 97-162 (557)
235 PRK15362 pathogenicity island 27.9 2.5E+02 0.0055 33.4 8.7 39 799-837 418-457 (473)
236 PF12018 DUF3508: Domain of un 27.9 7.5E+02 0.016 27.6 12.3 38 800-837 61-98 (281)
237 PF04740 LXG: LXG domain of WX 27.9 6E+02 0.013 26.3 11.1 24 851-874 170-193 (204)
238 cd07598 BAR_FAM92 The Bin/Amph 27.7 7.5E+02 0.016 26.6 11.8 53 809-867 136-188 (211)
239 PF06160 EzrA: Septation ring 27.7 5.8E+02 0.013 31.3 12.4 18 623-640 18-35 (560)
240 cd07648 F-BAR_FCHO The F-BAR ( 27.7 3.2E+02 0.007 29.8 9.4 13 855-867 205-217 (261)
241 KOG4460 Nuclear pore complex, 27.6 7.5E+02 0.016 30.5 12.5 39 800-841 611-649 (741)
242 COG5034 TNG2 Chromatin remodel 27.6 4.7E+02 0.01 29.2 10.1 91 749-839 8-104 (271)
243 PF10112 Halogen_Hydrol: 5-bro 27.6 7.3E+02 0.016 26.0 12.1 6 755-760 84-89 (199)
244 PF13949 ALIX_LYPXL_bnd: ALIX 27.5 3.9E+02 0.0084 29.4 10.0 38 800-838 193-230 (296)
245 PRK10884 SH3 domain-containing 27.2 3.6E+02 0.0078 29.0 9.2 23 806-828 144-166 (206)
246 PF09602 PhaP_Bmeg: Polyhydrox 27.0 7.5E+02 0.016 25.9 11.4 20 851-870 140-159 (165)
247 cd07602 BAR_RhoGAP_OPHN1-like 27.0 6.4E+02 0.014 27.2 11.0 48 766-813 4-53 (207)
248 KOG4031 Vesicle coat protein c 26.9 3.7E+02 0.008 29.1 9.0 71 799-875 134-204 (216)
249 KOG2996 Rho guanine nucleotide 26.8 8.7E+02 0.019 30.3 12.9 63 803-872 340-405 (865)
250 cd07653 F-BAR_CIP4-like The F- 26.7 8.2E+02 0.018 26.3 12.6 38 804-841 164-202 (251)
251 PRK10884 SH3 domain-containing 26.6 4.1E+02 0.0088 28.6 9.5 21 767-787 96-116 (206)
252 PF09789 DUF2353: Uncharacteri 26.6 1E+03 0.022 27.4 15.8 36 616-651 5-44 (319)
253 PF02480 Herpes_gE: Alphaherpe 26.3 22 0.00048 42.2 0.0 11 143-153 366-376 (439)
254 PF05308 Mito_fiss_reg: Mitoch 26.2 90 0.0019 34.6 4.6 9 305-313 135-143 (253)
255 PF10475 DUF2450: Protein of u 26.2 9.4E+02 0.02 26.8 13.8 213 603-868 60-290 (291)
256 COG2317 Zn-dependent carboxype 26.1 3E+02 0.0066 33.1 9.0 17 848-864 168-184 (497)
257 PF15345 TMEM51: Transmembrane 26.1 23 0.0005 38.4 0.1 32 129-161 58-90 (233)
258 KOG2773 Apoptosis antagonizing 26.1 1.2E+03 0.025 28.3 13.5 74 799-877 275-349 (483)
259 KOG3771 Amphiphysin [Intracell 26.1 3.2E+02 0.0069 32.8 9.2 13 799-811 67-79 (460)
260 PF05084 GRA6: Granule antigen 25.9 1.4E+02 0.003 31.0 5.4 12 153-164 172-183 (215)
261 TIGR03024 arch_pef_cterm PEF-C 25.8 78 0.0017 23.2 2.7 8 149-156 18-25 (26)
262 PRK10476 multidrug resistance 25.7 7.7E+02 0.017 27.8 12.3 28 812-839 118-145 (346)
263 KOG4590 Signal transduction pr 25.6 1.3E+02 0.0029 35.5 6.0 9 552-560 321-329 (409)
264 cd07627 BAR_Vps5p The Bin/Amph 25.4 4.6E+02 0.01 27.9 9.8 16 821-836 193-208 (216)
265 PF10821 DUF2567: Protein of u 25.4 91 0.002 32.5 4.2 29 129-157 46-74 (167)
266 cd07640 BAR_ASAP3 The Bin/Amph 25.4 8.7E+02 0.019 26.3 11.4 25 629-653 8-32 (213)
267 PF14942 Muted: Organelle biog 25.3 7.4E+02 0.016 25.3 12.5 36 801-839 104-139 (145)
268 PLN02939 transferase, transfer 25.3 1.7E+03 0.037 29.5 17.5 36 551-586 129-169 (977)
269 TIGR03501 gamma_C_targ gammapr 25.3 77 0.0017 23.2 2.6 11 147-157 13-23 (26)
270 PRK00523 hypothetical protein; 25.3 1.1E+02 0.0023 27.8 4.0 25 129-154 4-28 (72)
271 COG4694 Uncharacterized protei 25.2 6.3E+02 0.014 31.3 11.4 71 770-840 405-477 (758)
272 PHA03309 transcriptional regul 25.1 1.4E+02 0.003 38.0 6.2 20 294-313 1779-1798(2033)
273 KOG0980 Actin-binding protein 25.1 5.2E+02 0.011 33.5 11.1 43 746-788 340-382 (980)
274 smart00806 AIP3 Actin interact 25.0 1.2E+03 0.027 27.8 16.2 143 618-834 161-322 (426)
275 cd07592 BAR_Endophilin_A The B 25.0 6.4E+02 0.014 27.4 10.7 22 628-649 5-26 (223)
276 COG4345 Uncharacterized protei 25.0 1.2E+02 0.0026 31.5 4.9 38 536-578 49-86 (181)
277 PF15290 Syntaphilin: Golgi-lo 25.0 4.8E+02 0.01 29.5 9.7 33 807-839 116-152 (305)
278 KOG2057 Predicted equilibrativ 25.0 4.1E+02 0.0089 30.5 9.3 116 581-711 21-139 (499)
279 PF15035 Rootletin: Ciliary ro 24.8 3.7E+02 0.008 28.3 8.7 82 748-834 79-160 (182)
280 COG4942 Membrane-bound metallo 24.8 1.3E+03 0.027 27.7 14.4 123 746-877 38-169 (420)
281 PF15397 DUF4618: Domain of un 24.7 6.8E+02 0.015 28.0 10.9 40 749-788 66-105 (258)
282 PHA00728 hypothetical protein 24.7 1.4E+02 0.0031 29.4 5.1 24 765-788 6-29 (151)
283 PF11669 WBP-1: WW domain-bind 24.6 60 0.0013 31.0 2.6 17 143-159 33-49 (102)
284 cd07623 BAR_SNX1_2 The Bin/Amp 24.4 6.7E+02 0.014 26.9 10.8 60 810-876 151-211 (224)
285 PF06796 NapE: Periplasmic nit 24.4 1.2E+02 0.0026 26.1 4.0 27 126-153 20-46 (56)
286 KOG2398 Predicted proline-seri 24.4 7.9E+02 0.017 30.8 12.6 197 603-836 12-221 (611)
287 PF10392 COG5: Golgi transport 24.2 5.9E+02 0.013 25.1 9.6 84 750-838 12-95 (132)
288 PLN03099 PIR Protein PIR; Prov 24.2 1.7E+03 0.036 30.2 15.6 174 529-706 106-305 (1232)
289 PF07464 ApoLp-III: Apolipopho 24.1 5.9E+02 0.013 26.3 9.7 75 749-827 77-151 (155)
290 PF01025 GrpE: GrpE; InterPro 24.1 7.4E+02 0.016 24.9 10.6 19 851-869 89-107 (165)
291 COG4477 EzrA Negative regulato 24.0 1.4E+03 0.031 28.1 20.7 295 538-876 15-400 (570)
292 PF07431 DUF1512: Protein of u 24.0 2.6E+02 0.0057 32.4 7.8 45 826-872 60-105 (355)
293 PF15065 NCU-G1: Lysosomal tra 24.0 38 0.00081 39.1 1.3 27 132-159 324-350 (350)
294 KOG4849 mRNA cleavage factor I 23.8 7.4E+02 0.016 28.8 11.1 11 549-559 407-417 (498)
295 PF01025 GrpE: GrpE; InterPro 23.7 7.5E+02 0.016 24.8 11.0 16 857-872 88-103 (165)
296 TIGR00606 rad50 rad50. This fa 23.7 8.5E+02 0.018 33.2 13.8 43 801-843 927-969 (1311)
297 PF10392 COG5: Golgi transport 23.6 7.1E+02 0.015 24.5 10.7 30 755-785 64-93 (132)
298 COG0497 RecN ATPase involved i 23.5 7.6E+02 0.017 30.6 12.0 31 755-785 309-339 (557)
299 KOG4552 Vitamin-D-receptor int 23.3 3.6E+02 0.0077 29.2 8.0 83 738-837 52-134 (272)
300 PF03302 VSP: Giardia variant- 23.3 40 0.00086 39.5 1.3 11 146-156 385-396 (397)
301 COG0598 CorA Mg2+ and Co2+ tra 23.2 5.7E+02 0.012 28.9 10.5 21 769-789 178-198 (322)
302 COG1340 Uncharacterized archae 23.2 1.1E+03 0.025 26.7 13.1 67 768-834 135-202 (294)
303 KOG0976 Rho/Rac1-interacting s 23.1 4.9E+02 0.011 33.4 10.2 12 810-821 136-147 (1265)
304 cd07626 BAR_SNX9_like The Bin/ 22.9 9.5E+02 0.021 25.7 13.1 27 799-825 167-193 (199)
305 PF09057 Smac_DIABLO: Second M 22.9 7.7E+02 0.017 27.0 10.5 71 760-830 129-199 (234)
306 TIGR02595 PEP_exosort PEP-CTER 22.7 92 0.002 22.5 2.6 9 148-156 15-23 (26)
307 COG3197 FixS Uncharacterized p 22.7 1E+02 0.0022 26.7 3.3 15 147-161 19-34 (58)
308 PF09583 Phageshock_PspG: Phag 22.6 1.5E+02 0.0033 26.2 4.4 14 143-156 52-65 (65)
309 PRK00409 recombination and DNA 22.5 1.4E+03 0.03 29.5 14.6 33 801-833 563-595 (782)
310 PF01690 PLRV_ORF5: Potato lea 22.5 67 0.0014 38.3 2.9 9 600-608 455-463 (465)
311 TIGR02972 TMAO_torE trimethyla 22.5 1.5E+02 0.0032 24.8 4.0 27 126-153 12-38 (47)
312 PF12699 phiKZ_IP: phiKZ-like 22.1 6.4E+02 0.014 29.0 10.7 20 762-781 48-67 (339)
313 PF09726 Macoilin: Transmembra 22.1 6.5E+02 0.014 32.0 11.5 19 850-868 618-636 (697)
314 PF11559 ADIP: Afadin- and alp 22.0 8E+02 0.017 24.5 15.2 26 763-788 65-90 (151)
315 PF03961 DUF342: Protein of un 22.0 4.2E+02 0.009 31.5 9.5 29 805-833 379-407 (451)
316 PRK11085 magnesium/nickel/coba 22.0 9.8E+02 0.021 27.3 12.0 22 766-787 171-192 (316)
317 PF08807 DUF1798: Bacterial do 21.9 7.4E+02 0.016 24.1 10.3 26 799-824 25-50 (111)
318 PHA03211 serine/threonine kina 21.9 97 0.0021 36.8 4.2 28 639-670 266-293 (461)
319 PRK04778 septation ring format 21.9 1.5E+03 0.033 27.7 25.2 67 762-830 273-339 (569)
320 PF05055 DUF677: Protein of un 21.9 4.9E+02 0.011 30.1 9.6 26 765-790 258-283 (336)
321 PRK10872 relA (p)ppGpp synthet 21.8 8.5E+02 0.018 31.2 12.4 52 611-664 190-241 (743)
322 KOG2008 BTK-associated SH3-dom 21.8 1.3E+03 0.027 26.7 12.8 7 812-818 131-137 (426)
323 KOG1029 Endocytic adaptor prot 21.8 9.4E+02 0.02 31.0 12.2 47 610-656 437-484 (1118)
324 TIGR00996 Mtu_fam_mce virulenc 21.8 9.6E+02 0.021 26.3 11.8 65 805-873 217-281 (291)
325 PF09802 Sec66: Preprotein tra 21.7 68 0.0015 34.0 2.5 15 776-790 79-93 (190)
326 KOG4302 Microtubule-associated 21.6 7E+02 0.015 31.5 11.3 71 800-871 46-116 (660)
327 KOG3397 Acetyltransferases [Ge 21.5 78 0.0017 33.2 2.8 11 288-298 126-136 (225)
328 COG3165 Uncharacterized protei 21.5 8.2E+02 0.018 26.4 10.3 65 801-876 130-194 (204)
329 PF04108 APG17: Autophagy prot 21.4 1.4E+03 0.03 27.0 18.2 12 697-708 111-122 (412)
330 PF05568 ASFV_J13L: African sw 21.3 78 0.0017 32.1 2.7 9 129-137 34-42 (189)
331 PF02252 PA28_beta: Proteasome 21.3 5.5E+02 0.012 26.3 8.8 65 767-839 16-80 (150)
332 PF10455 BAR_2: Bin/amphiphysi 21.2 1.2E+03 0.027 26.4 15.4 51 813-868 227-277 (289)
333 PRK06975 bifunctional uroporph 21.2 4.2E+02 0.0091 33.2 9.6 7 834-840 610-616 (656)
334 KOG0260 RNA polymerase II, lar 21.2 8.7E+02 0.019 32.8 12.1 16 125-140 1302-1317(1605)
335 PF08687 ASD2: Apx/Shroom doma 21.2 1.2E+03 0.026 26.2 13.8 96 771-877 154-250 (264)
336 cd07628 BAR_Atg24p The Bin/Amp 20.9 9.7E+02 0.021 25.0 13.3 38 800-838 86-123 (185)
337 PF07174 FAP: Fibronectin-atta 20.6 6.8E+02 0.015 28.2 9.8 16 201-216 190-207 (297)
338 TIGR03521 GldG gliding-associa 20.6 77 0.0017 38.7 3.1 8 146-153 538-545 (552)
339 KOG2218 ER to golgi transport 20.5 1.8E+03 0.038 28.4 14.3 29 636-664 504-532 (737)
340 PF10191 COG7: Golgi complex c 20.5 1.7E+03 0.036 28.7 14.8 26 597-622 151-176 (766)
341 PF09869 DUF2096: Uncharacteri 20.4 8E+02 0.017 25.8 9.7 25 763-787 41-65 (169)
342 PF07464 ApoLp-III: Apolipopho 20.4 7.3E+02 0.016 25.6 9.5 54 819-872 96-150 (155)
343 PF06419 COG6: Conserved oligo 20.4 1.6E+03 0.034 28.1 14.3 35 751-789 36-70 (618)
344 TIGR03545 conserved hypothetic 20.4 1E+03 0.022 29.4 12.4 40 805-844 234-277 (555)
345 cd07668 BAR_SNX9 The Bin/Amphi 20.4 1.1E+03 0.024 25.6 11.4 33 799-831 175-207 (210)
346 PF15176 LRR19-TM: Leucine-ric 20.3 1.4E+02 0.0031 28.6 4.1 29 123-153 11-39 (102)
347 PRK10947 global DNA-binding tr 20.3 6.1E+02 0.013 25.6 8.7 19 824-842 54-72 (135)
348 TIGR02973 nitrate_rd_NapE peri 20.2 1.8E+02 0.004 23.7 4.0 26 127-153 8-33 (42)
349 KOG4848 Extracellular matrix-a 20.2 1.1E+03 0.024 25.4 14.4 64 804-872 142-211 (225)
350 PF05600 DUF773: Protein of un 20.2 5.2E+02 0.011 31.5 9.8 21 767-787 120-140 (507)
351 PF04523 Herpes_U30: Herpes vi 20.1 1.7E+03 0.036 29.3 14.8 60 633-694 573-636 (887)
352 cd07618 BAR_Rich1 The Bin/Amph 20.1 1.2E+03 0.026 25.8 12.1 19 631-649 16-34 (246)
No 1
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=1.9e-70 Score=626.59 Aligned_cols=374 Identities=39% Similarity=0.617 Sum_probs=336.0
Q ss_pred CCCCCCCccccccccccccCCCCceeccccccccccCHHHHHHHhhhcCCCCCCCcc-C-Cccc-ccCCCCcccccChhh
Q 002497 461 EETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNSKDN-G-RKQV-LSVPNQENRVLDPKK 537 (915)
Q Consensus 461 ~~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~~~~~~Ld~~eLE~lF~~k~~~~~~K~~-~-kk~v-~~k~~keisvLD~KR 537 (915)
...|+.|||+|||+||+..++++|||+++++.. ++|+++||++|+++......+.. . ++.. .+++.++++|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 468999999999999999999999999999875 79999999999987654332221 1 1111 223456799999999
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHHHhCcccHHH
Q 002497 538 SQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFK 617 (915)
Q Consensus 538 aqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~IP~~~~ 617 (915)
+|||+|+|++|+++.++|++||++||...|+.|.|+.|++++||.||+.+|++|.+++++.|+++||||+.|++||+|..
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~ 161 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE 161 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998867899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCCC
Q 002497 618 RVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADG 697 (915)
Q Consensus 618 RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~ 697 (915)
||+||+|+.+|++.+++|+..|.+|.+||++|++|+.|++||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus 162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~ 241 (432)
T smart00498 162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN 241 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHH
Q 002497 698 KTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLA 777 (915)
Q Consensus 698 k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~ 777 (915)
++|||||||+.|.++++. +..|.+||..|..|++++ ++|.+++.+|+
T Consensus 242 k~tLLhylv~~i~~~~p~--------------------------------~~~f~~el~~v~~askvs-~~l~~~~~~l~ 288 (432)
T smart00498 242 KTTLLHFLVKIIRKKYPD--------------------------------LLDFYSDLHHLDKAKVNL-EQLEKDVKQLE 288 (432)
T ss_pred CccHHHHHHHHHHHhChh--------------------------------hccchhhhccHHHHHHHH-HHHHHHHHHHH
Confidence 999999999988775432 345778999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHH
Q 002497 778 AGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVK 857 (915)
Q Consensus 778 ~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~ 857 (915)
++++.++..+..... ....+|+|..+|..|+..|+.+++.|+..++++...|++++.|||||+++ ..+.+||.+|.
T Consensus 289 ~~~~~~e~~~~~l~~--~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~ 364 (432)
T smart00498 289 RQIKNLETDLGGLSD--PENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFN 364 (432)
T ss_pred HHHHHHHHHHHhcCC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHH
Confidence 999999865432211 12235899999999999999999999999999999999999999999885 45689999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002497 858 EFLSTLDQVCKEVGR 872 (915)
Q Consensus 858 dFl~~~dka~kE~~r 872 (915)
+|+..|.+|++|+.+
T Consensus 365 ~F~~~f~ka~~en~~ 379 (432)
T smart00498 365 EFLKEFSKAAEENIK 379 (432)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=6.4e-70 Score=619.21 Aligned_cols=376 Identities=26% Similarity=0.418 Sum_probs=334.7
Q ss_pred CCCCCCCCccccccccccccC-CCCceeccccccccccC--HHHHHHHhhhcCCCCCCCccC--CcccccCCCCcccccC
Q 002497 460 SEETPRPKLKPLHWDKVRASS-DRAMVWDQFKSGSFQLN--EEMIETLFTVNNSNLNSKDNG--RKQVLSVPNQENRVLD 534 (915)
Q Consensus 460 ~~~~Pk~KLK~LhWdKL~~~~-~~~TIW~~l~~~~~~Ld--~~eLE~lF~~k~~~~~~K~~~--kk~v~~k~~keisvLD 534 (915)
....+...||+++|.||.... -++.+|-.++++.++-| ++.|+.-|+++....+..+.+ ++.+.+|+.++..|||
T Consensus 618 K~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilD 697 (1102)
T KOG1924|consen 618 KVYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILD 697 (1102)
T ss_pred ccCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecc
Confidence 456677789999999998765 47899999998887544 577888899886544322221 3334456777899999
Q ss_pred hhhhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHHHhCccc
Q 002497 535 PKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPF 614 (915)
Q Consensus 535 ~KRaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~IP~ 614 (915)
.|.|||++|+|+.|+++++||+.+|+++|+++|+...|++|++++|..|-+.+|.+++.+. +.|.+.|||...|..|.+
T Consensus 698 sKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaey-e~l~e~EQF~vvm~~vkr 776 (1102)
T KOG1924|consen 698 SKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEY-EDLPEPEQFVVVMSQVKR 776 (1102)
T ss_pred hHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-cCCCCHHHHhHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999998766 789999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeecccccccccccc
Q 002497 615 AFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 694 (915)
Q Consensus 615 ~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs 694 (915)
+.-||.+++|+.+|.+.+++|++.|..+.+||+|||+|+.|.+||++||.+|||||+|+.+.+|+||.++.|.||.|+|+
T Consensus 777 L~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKs 856 (1102)
T KOG1924|consen 777 LRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKS 856 (1102)
T ss_pred cChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHH
Q 002497 695 ADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVA 774 (915)
Q Consensus 695 ~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~ 774 (915)
+|+|+||||||++ |++. .++| +..|..||.+|.+|++++.+.|...+.
T Consensus 857 aDqk~TLLHfLae-~~e~--------------------kypd-----------~l~F~ddl~hv~kaSrvnad~ikK~~~ 904 (1102)
T KOG1924|consen 857 ADQKTTLLHFLAE-ICEE--------------------KYPD-----------ILKFPDDLEHVEKASRVNADEIKKNLQ 904 (1102)
T ss_pred cchhhHHHHHHHH-HHHH--------------------hChh-----------hhcchhhHHHHHhhccccHHHHHHHHH
Confidence 9999999999997 4443 2222 467788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHH
Q 002497 775 KLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFL 854 (915)
Q Consensus 775 kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~ 854 (915)
.++..|++++..++.....+ ...|+|.++|..|.++|.+++..|.....+|+++|+++.+||.-|+++..+ ++||+
T Consensus 905 ~m~~~ik~Le~dlk~~~~~~--~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysm--EEFFa 980 (1102)
T KOG1924|consen 905 QMENQIKKLERDLKNFKIAG--NEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSM--EEFFA 980 (1102)
T ss_pred HHHHHHHHHHHHHHhcCCCC--cchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcH--HHHHH
Confidence 99999999999888654221 236899999999999999999999999999999999999999999998654 79999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002497 855 VVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 855 ~l~dFl~~~dka~kE~~r 872 (915)
.++.|-++|..|.+|+.+
T Consensus 981 Di~tFrnaf~ea~~en~k 998 (1102)
T KOG1924|consen 981 DIRTFRNAFLEAVAENEK 998 (1102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887654
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=7.2e-67 Score=585.07 Aligned_cols=366 Identities=35% Similarity=0.608 Sum_probs=309.6
Q ss_pred CCCCCCCCccccccccccccCCCCceeccccccc--cccCHHHHHHHhhhcCCCCCCCccCCcccccCCCCcccccChhh
Q 002497 460 SEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGS--FQLNEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLDPKK 537 (915)
Q Consensus 460 ~~~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~~~~--~~Ld~~eLE~lF~~k~~~~~~K~~~kk~v~~k~~keisvLD~KR 537 (915)
...+|+.|||+|||++|+..++.+|||+++++.. .++|+++||++|+.+......+. ......++.+.++|||.||
T Consensus 3 ~~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~--~~~~~~~~~~~~~iLd~kr 80 (370)
T PF02181_consen 3 KKPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK--KQASKKKKKKKISILDPKR 80 (370)
T ss_dssp -----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH------HCCCCTTCCESSS-HHH
T ss_pred CCCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc--cccccccccccccccchHH
Confidence 4578999999999999999999999999998875 47889999999998876532211 0111223456789999999
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHHHhCcccHHH
Q 002497 538 SQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFK 617 (915)
Q Consensus 538 aqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~IP~~~~ 617 (915)
+|||+|+|++|++++++|++||.+||...|+.|.|+.|++++||.||++.+++|.++ ...|+++|+|++.|+.||++..
T Consensus 81 ~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~-~~~L~~~E~f~~~l~~ip~~~~ 159 (370)
T PF02181_consen 81 SQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGD-PATLGPAEQFLLELSKIPRLKE 159 (370)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTS-GTTB-HHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhcc-HHhhccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 4899999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCCC
Q 002497 618 RVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADG 697 (915)
Q Consensus 618 RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~ 697 (915)
||+||+|+.+|++.++++...|..|.+||++|++|+.|++||++||++|||||.|+.+|+|+||+|++|.||.+||++|+
T Consensus 160 rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~ 239 (370)
T PF02181_consen 160 RLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDN 239 (370)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHH
Q 002497 698 KTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLA 777 (915)
Q Consensus 698 k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~ 777 (915)
++|||||||+.+.+. +++ +..|.+||..|..|+++++++|.+++.+|+
T Consensus 240 ~~tLL~~l~~~~~~~---------------------~~~-----------~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~ 287 (370)
T PF02181_consen 240 KTTLLHYLVKIVEEK---------------------FPD-----------LLDLEDELSSVEKASKVSLDELEQDIKELE 287 (370)
T ss_dssp TSBHHHHHHHHHHTT---------------------SGG-----------GGGHHHHTTTHHHCCTS-HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc---------------------ChH-----------HhccHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence 999999999866532 111 456778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHH
Q 002497 778 AGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVK 857 (915)
Q Consensus 778 ~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~ 857 (915)
+++++++.+++.... ..+.++.|...|..|++.++.++..|++.++++.+.|++++.|||||+++ ..+.+||++|.
T Consensus 288 ~~~~~~~~~l~~~~~--~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~~ff~~l~ 363 (370)
T PF02181_consen 288 KGLEKIKKELEAIEK--DEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKK--MSPEEFFKILS 363 (370)
T ss_dssp HHHHHHHHHHHHCCT--TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHH
Confidence 999999999976543 23457899999999999999999999999999999999999999999874 56789999999
Q ss_pred HHHHHHH
Q 002497 858 EFLSTLD 864 (915)
Q Consensus 858 dFl~~~d 864 (915)
+|+..|+
T Consensus 364 ~F~~~fk 370 (370)
T PF02181_consen 364 QFIDMFK 370 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=8.9e-54 Score=524.35 Aligned_cols=401 Identities=42% Similarity=0.654 Sum_probs=358.3
Q ss_pred CCCCCCccccccccccccCCCCceeccccccccccCH---HHHHHHhhhcCCCCCCC--ccCCcccccCCCCcccccChh
Q 002497 462 ETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSFQLNE---EMIETLFTVNNSNLNSK--DNGRKQVLSVPNQENRVLDPK 536 (915)
Q Consensus 462 ~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~~~~~~Ld~---~eLE~lF~~k~~~~~~K--~~~kk~v~~k~~keisvLD~K 536 (915)
..++.+||++||++++......++|+.+....+..|. +++|.+|.......... +.+.........+++.|+|.+
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 6789999999999999999999999999988876666 89999997665432211 111111122233678999999
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHH-HhCcccH
Q 002497 537 KSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRA-VLEIPFA 615 (915)
Q Consensus 537 RaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~-l~~IP~~ 615 (915)
+.||++|+|+.+++..+++++||+.+|+..++.++|+.|.+++|+++|..+++.|.++. ..|+.+|+|+.+ +..|+++
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~-~~l~~~e~~~~~~~~~ip~~ 548 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDP-LTLGDAEKFFFEELSGIPEF 548 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCC-CccchHHHHHHHHhhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999986 799999998887 6679999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccC
Q 002497 616 FKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGA 695 (915)
Q Consensus 616 ~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~ 695 (915)
..|+++++|+..|..++..+.+.+.++..||++|+++++|.++|++||..|||||.|++||+|+||+|++|.||.|+|+.
T Consensus 549 ~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~ 628 (833)
T KOG1922|consen 549 EERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSS 628 (833)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHH
Q 002497 696 DGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAK 775 (915)
Q Consensus 696 D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~k 775 (915)
++++++||+++.+|++.++.+.. . ++.+++++|++.|.+|..||.+|++|++|+++++.+++.+
T Consensus 629 ~~~~~~l~~~~~e~~~~~~~r~~---------------~-~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~ 692 (833)
T KOG1922|consen 629 DGKTTLLHFVVPEVVRSEGKRSV---------------I-DVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSD 692 (833)
T ss_pred cccchhhhhhHHHHHHhhccccc---------------h-hhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHH
Confidence 99999999999999998876431 0 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHH
Q 002497 776 LAAGITKIMEVVK-LNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFL 854 (915)
Q Consensus 776 L~~gl~kv~~~l~-~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~ 854 (915)
|.+++.++++.++ ..+... ....+.|..+|..|+..|+.++..+..++.++...++++++|||++++ ++.++.++|.
T Consensus 693 l~~~~~~~~~~l~~~~~~~~-~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~-~~~~~~~~f~ 770 (833)
T KOG1922|consen 693 LKKGLEKVKRELPTASKNES-LPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPK-EEITPEQVFS 770 (833)
T ss_pred HHHHHHHHHHHhhhhhcCCC-CCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccCCHHHHHH
Confidence 9999999999996 222111 235789999999999999999999999999999999999999999998 6788999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCC
Q 002497 855 VVKEFLSTLDQVCKEVGRINERTIYSS 881 (915)
Q Consensus 855 ~l~dFl~~~dka~kE~~r~~er~~~~s 881 (915)
++++|+..|+++|+|++++++++.+.+
T Consensus 771 ~~r~fl~~~~~~~~e~~~~~~k~~~~~ 797 (833)
T KOG1922|consen 771 ILRDFLRTFDKAHEENKKAEEKEKTYE 797 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999885443
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.2e-49 Score=457.45 Aligned_cols=366 Identities=24% Similarity=0.374 Sum_probs=321.1
Q ss_pred CCCCCCCCccccccccccccCCCCceecccccccc--ccCHHHHHHHhhhcCCCCC-CCcc-CCcccccCCCCcccccCh
Q 002497 460 SEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSF--QLNEEMIETLFTVNNSNLN-SKDN-GRKQVLSVPNQENRVLDP 535 (915)
Q Consensus 460 ~~~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~~~~~--~Ld~~eLE~lF~~k~~~~~-~K~~-~kk~v~~k~~keisvLD~ 535 (915)
.....|.|+-.|+|..+...++++|+|+++.+..| ++|++++|+.|........ --+. .+.....+..+++++||.
T Consensus 363 ~~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle~ 442 (830)
T KOG1923|consen 363 KPTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLEQ 442 (830)
T ss_pred CCCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHHH
Confidence 34556778889999999999999999999998776 7999999999998332211 1111 111112334568999999
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhccc-CC-CCCChHHHHHHHHhCcc
Q 002497 536 KKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDE-SP-FKLGPAEKFLRAVLEIP 613 (915)
Q Consensus 536 KRaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d-~p-s~L~~aEqFl~~l~~IP 613 (915)
+|++|++|-++ +++..++|+.||..+|...|..+.+++|.+++||++|...+++|.-+ .+ ..|...|+|++.+..|.
T Consensus 443 ~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIE 521 (830)
T KOG1923|consen 443 RRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIE 521 (830)
T ss_pred HHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhh
Confidence 99999999999 99999999999999999999999999999999999999999998754 23 68999999999999999
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccc
Q 002497 614 FAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVK 693 (915)
Q Consensus 614 ~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvK 693 (915)
++.+||..|.|+.+|.+.+.-+.+++..+..|+..+++|++|+.||++||++|||||.+ .||.|+||+|.+|.-|.++|
T Consensus 522 rle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~tk 600 (830)
T KOG1923|consen 522 RLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLDTK 600 (830)
T ss_pred hhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999987 57999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHH
Q 002497 694 GADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEV 773 (915)
Q Consensus 694 s~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv 773 (915)
++|.++|||||+|-.|.++ ++ .+..|.+||.-|++|+.++++.+..||
T Consensus 601 StDr~~tLlh~iv~~i~ek---------------------lp-----------~l~~F~~el~~~eKa~av~lesV~~Dv 648 (830)
T KOG1923|consen 601 STDRSMTLLHYIVLTIAEK---------------------LP-----------ALQLFFSELDFVEKATAVQLESVLADV 648 (830)
T ss_pred CCccceeeeehhhHHHHHh---------------------hH-----------HHHhhHHHhhccchhhhhhhhccchhH
Confidence 9999999999999766542 21 246788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhH
Q 002497 774 AKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIF 853 (915)
Q Consensus 774 ~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF 853 (915)
.+|.+|+...+++..... .+ .+|+.|++..+.++++|++.++.+.+.|+++++||||.++. ..|..||
T Consensus 649 ~eL~~g~~l~~kE~e~~~-------~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~--tppt~ff 716 (830)
T KOG1923|consen 649 KELNAGMTLAEKETEREG-------LD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKT--TPPTVFF 716 (830)
T ss_pred HHHHhHHHHHHHHHhhhc-------cc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCC--CCCCccH
Confidence 999999999988775431 12 78999999999999999999999999999999999999875 5667899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002497 854 LVVKEFLSTLDQVCKEVG 871 (915)
Q Consensus 854 ~~l~dFl~~~dka~kE~~ 871 (915)
..+..|+.+|+++..|++
T Consensus 717 ~~f~~F~~~~k~~~~ene 734 (830)
T KOG1923|consen 717 QLFVRFVRAYKMARQENE 734 (830)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 999999999999986553
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=5.1e-45 Score=401.05 Aligned_cols=395 Identities=23% Similarity=0.335 Sum_probs=327.7
Q ss_pred CCCCCCcccccccccccc--------CCCCceeccccccccccCHHHHHHHhhhcCCCCCC-CccCCcccccCCCCcccc
Q 002497 462 ETPRPKLKPLHWDKVRAS--------SDRAMVWDQFKSGSFQLNEEMIETLFTVNNSNLNS-KDNGRKQVLSVPNQENRV 532 (915)
Q Consensus 462 ~~Pk~KLK~LhWdKL~~~--------~~~~TIW~~l~~~~~~Ld~~eLE~lF~~k~~~~~~-K~~~kk~v~~k~~keisv 532 (915)
...++|.-+|||..+.-. ..++|+|+.++... +|.+.||.||..+..+..+ |+ +..-+.+..+|
T Consensus 278 ~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~P~KK-----~~E~r~~~~tV 350 (817)
T KOG1925|consen 278 LPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVLPSKK-----AGEGRRTMTTV 350 (817)
T ss_pred ccccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhccchh-----hcccceeeeee
Confidence 445677889999976542 34689999999764 8999999999987655432 22 11223345789
Q ss_pred cChhhhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhcccCC-CCCChHHHHHHHHhC
Q 002497 533 LDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESP-FKLGPAEKFLRAVLE 611 (915)
Q Consensus 533 LD~KRaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~p-s~L~~aEqFl~~l~~ 611 (915)
||.||.|.|+|-|-+|. ++.-|..||++.|+-+|+.|.|+.|++|+|+.||+++++...-..| ..|+.|||||+.|..
T Consensus 351 L~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSs 429 (817)
T KOG1925|consen 351 LDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSS 429 (817)
T ss_pred cCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhh
Confidence 99999999999999996 6788999999999999999999999999999999999988776655 489999999999999
Q ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccc
Q 002497 612 IPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVD 691 (915)
Q Consensus 612 IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~d 691 (915)
|+.+..||+.|+|+..|+..-.+|.+-|-.+..++++|.+++.|+-+|.++|+||||||+. +++||.|+.|.|..+
T Consensus 430 I~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKvsE 505 (817)
T KOG1925|consen 430 IGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKVSE 505 (817)
T ss_pred hHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhchh
Confidence 9999999999999999999999999999999999999999999999999999999999974 789999999999999
Q ss_pred cccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHH
Q 002497 692 VKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSS 771 (915)
Q Consensus 692 vKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~s 771 (915)
||++-.|.||||+|+..+++ +|+|. .+|+.|+..|.+.|+||+++|..
T Consensus 506 VKDtV~KqsLlhHlc~~vVE---------------------~Fpes-----------sDLYSEiGA~tRSAkVDf~qL~D 553 (817)
T KOG1925|consen 506 VKDTVRKQSLLHHLCSLVVE---------------------TFPES-----------SDLYSEIGALTRSAKVDFEQLTD 553 (817)
T ss_pred hcchHHHHHHHHHHHHHHHH---------------------hCCcc-----------hhHHHHhHhhhhhhhccHHHHHH
Confidence 99999999999999988776 45553 56889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc-cccCch
Q 002497 772 EVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAK-EEAHPF 850 (915)
Q Consensus 772 dv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k-~e~~p~ 850 (915)
.+.+|++.++.-=+-|+... +.+-.-.....|..|+++|.++|..|+.-+..+.+.|...+.|||-.+.. .+.++.
T Consensus 554 NL~qlErrCKaSWe~L~~Ia---khe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN 630 (817)
T KOG1925|consen 554 NLGQLERRCKASWESLRSIA---KHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRIN 630 (817)
T ss_pred HHHHHHHHhhHHHHHHHHHH---hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHH
Confidence 99999998876544454433 33445678899999999999999999999999999999999999976543 356788
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHH---hhhhhcc-----------CCCCCCCCCCCCCCCCCCCCCCCc
Q 002497 851 RIFLVVKEFLSTLDQVCK----EVGR---INERTIY-----------SSVRPMPTNPALPPAFPGFNGRQH 903 (915)
Q Consensus 851 ~fF~~l~dFl~~~dka~k----E~~r---~~er~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~ 903 (915)
+||.+|++|.-+|...++ +-+| ..||... +..+..++++..++.+....+-.+
T Consensus 631 ~fc~~~~EFaLEYRTTRervLQQ~qk~A~~RERNKTRGKmit~~Gkfs~~G~~pA~Ps~p~~~s~G~~A~d 701 (817)
T KOG1925|consen 631 QFCHTLREFALEYRTTRERVLQQQQKQATYRERNKTRGKMITETGKFSGVGEAPANPSVPVAVSSGPGAGD 701 (817)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcccccceeeecccccCCCCCCCCcccccccCCCCCCcc
Confidence 999999999999864443 2222 2333211 112477888888877775444443
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=7.6e-08 Score=113.32 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeecccccccccccc
Q 002497 637 RSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 694 (915)
Q Consensus 637 ~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs 694 (915)
..|..+.+-.++|.....|..+|.-|-.+-=+| .+.=|||..=..+.++|-
T Consensus 749 ~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL-------~~ilFKl~fse~vnniKP 799 (1102)
T KOG1924|consen 749 NKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRL-------SAILFKLTFSEQVNNIKP 799 (1102)
T ss_pred HHHHHHHHhccCCCCHHHHhHHHhhccccChhH-------HHHHHHhhHHHHHhhcCh
Confidence 345555555666777777776666665544433 356677776666666664
No 8
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=98.02 E-value=1.9e-05 Score=91.70 Aligned_cols=117 Identities=29% Similarity=0.388 Sum_probs=95.7
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 755 LTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEI-AMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKE 833 (915)
Q Consensus 755 L~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~-~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ke 833 (915)
+.....++..+++.|...+.++...+.++...+...... ..++--..|.+-|..|.+.+++.+..++.+.++.+..+++
T Consensus 315 m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~ 394 (432)
T smart00498 315 MKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKE 394 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478888999999999999999999887766432211 1122336788889999999999999999999999999999
Q ss_pred HHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002497 834 ITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVG 871 (915)
Q Consensus 834 l~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~ 871 (915)
+++||++...+.+.++..+|.+++||+.++|++|++++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 395 TTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred HHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 99999987766668889999999999999999999863
No 9
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=96.35 E-value=2.5 Score=53.66 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhcccccc
Q 002497 639 FETLQVACGELRKSRMFLKLLEAVLKTGNRMNV 671 (915)
Q Consensus 639 l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~ 671 (915)
+..+..+....+....++.+.+++...|++++.
T Consensus 620 ~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~ 652 (833)
T KOG1922|consen 620 LKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVI 652 (833)
T ss_pred hhhhhhhcccccchhhhhhHHHHHHhhccccch
Confidence 333333344445566788888999999998885
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=96.16 E-value=7.8 Score=53.59 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=4.7
Q ss_pred CCCceeccc
Q 002497 481 DRAMVWDQF 489 (915)
Q Consensus 481 ~~~TIW~~l 489 (915)
.+.+.|-..
T Consensus 3024 l~q~~~~~~ 3032 (3151)
T PHA03247 3024 LKQTLWPPD 3032 (3151)
T ss_pred cccCCCCCC
Confidence 455666443
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.39 E-value=0.062 Score=62.48 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=16.2
Q ss_pred CCCCCCccccccccccccCCCCceecccc
Q 002497 462 ETPRPKLKPLHWDKVRASSDRAMVWDQFK 490 (915)
Q Consensus 462 ~~Pk~KLK~LhWdKL~~~~~~~TIW~~l~ 490 (915)
.++...||.+.-..+.....++-+-++|.
T Consensus 475 i~~G~ql~~ve~t~~~~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 475 IAPGGQLKKVETTALSSGDGRDALMAQIR 503 (569)
T ss_pred cCccccccceeeccCcCcccHHHHHHHHH
Confidence 45555666665555554445555655555
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=95.29 E-value=21 Score=49.90 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 002497 638 SFETLQVACGELR 650 (915)
Q Consensus 638 ~l~~l~~AceeLr 650 (915)
.|..|++||+-|+
T Consensus 3110 alAlLi~ACr~i~ 3122 (3151)
T PHA03247 3110 ALAVLIEACRRIR 3122 (3151)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666554
No 13
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.95 E-value=0.09 Score=61.18 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 002497 428 LVAPSSL 434 (915)
Q Consensus 428 ~ppP~Pp 434 (915)
++||+||
T Consensus 426 apPppPP 432 (569)
T KOG3671|consen 426 APPPPPP 432 (569)
T ss_pred CCCCCCc
Confidence 3333333
No 14
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=93.80 E-value=0.14 Score=54.17 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=14.8
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 002497 125 HRHVIILAISLSFLSAAVLI 144 (915)
Q Consensus 125 ~~~~~~~ai~~~~~~~~~~~ 144 (915)
..+ |+|||++++++|+++|
T Consensus 36 ~~~-I~iaiVAG~~tVILVI 54 (221)
T PF08374_consen 36 YVK-IMIAIVAGIMTVILVI 54 (221)
T ss_pred cee-eeeeeecchhhhHHHH
Confidence 444 8999999999999444
No 15
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=93.71 E-value=0.0045 Score=48.79 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSK 156 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~ 156 (915)
||+||+++++.++++| ++.||+||||+
T Consensus 13 Ia~~VvVPV~vI~~vl-~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVL-GAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHH-HHHhheEEecc
Confidence 6777888888877343 44455445443
No 16
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=91.52 E-value=0.17 Score=55.55 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 002497 133 ISLSFLSAAVLIAAAAVFIYFRSKH 157 (915)
Q Consensus 133 i~~~~~~~~~~~~~~~~~~~rr~~~ 157 (915)
+++.|++| +|+|+-+|||||||+
T Consensus 266 lvllil~v--vliiLYiWlyrrRK~ 288 (295)
T TIGR01478 266 LVLIILTV--VLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhcc
Confidence 44455544 455889999998876
No 17
>PTZ00370 STEVOR; Provisional
Probab=91.30 E-value=0.19 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 002497 133 ISLSFLSAAVLIAAAAVFIYFRSKH 157 (915)
Q Consensus 133 i~~~~~~~~~~~~~~~~~~~rr~~~ 157 (915)
+++.|++| +|+|+-+|||||||+
T Consensus 262 lvllil~v--vliilYiwlyrrRK~ 284 (296)
T PTZ00370 262 LVLLILAV--VLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhcc
Confidence 44455544 455889999998875
No 18
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.24 E-value=1 Score=55.15 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=18.5
Q ss_pred HHHHhchhHHHHHHHHHHhccccccCCC
Q 002497 647 GELRKSRMFLKLLEAVLKTGNRMNVGTN 674 (915)
Q Consensus 647 eeLr~S~~L~~lL~lVL~iGN~LN~gt~ 674 (915)
.+-|.-+...++.-.+..++|.=-.|..
T Consensus 558 k~sr~lr~VleiILA~gNymns~kRg~a 585 (830)
T KOG1923|consen 558 KESRKLRPVLEIILAFGNYMNSSKRGAA 585 (830)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccccc
Confidence 4445555566666788888888776653
No 19
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.23 E-value=15 Score=47.31 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=11.7
Q ss_pred HHHHHHHHHhccccccC
Q 002497 656 LKLLEAVLKTGNRMNVG 672 (915)
Q Consensus 656 ~~lL~lVL~iGN~LN~g 672 (915)
+.+=.+|-+|+|||+..
T Consensus 1471 ~el~~Li~~v~~Flt~~ 1487 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQP 1487 (1758)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 33445777888998864
No 20
>PF15102 TMEM154: TMEM154 protein family
Probab=88.26 E-value=0.22 Score=49.96 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=23.0
Q ss_pred cccccccccccCCCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 002497 106 TFPANISSLLFPHPPS-KSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKHRSS 160 (915)
Q Consensus 106 t~panis~l~~p~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~ 160 (915)
++.||+.+--...... .....+++.|+|-+++++|++|++++++++| |||+.|.
T Consensus 35 ~~ta~~~st~~~~t~~~~~q~efiLmIlIP~VLLvlLLl~vV~lv~~~-kRkr~K~ 89 (146)
T PF15102_consen 35 TLTANINSTETSLTEEDSSQLEFILMILIPLVLLVLLLLSVVCLVIYY-KRKRTKQ 89 (146)
T ss_pred ccccccCcccccccCCCCCCcceEEEEeHHHHHHHHHHHHHHHheeEE-eecccCC
Confidence 4566665444322222 2334444455555444444423333333333 4444444
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.42 E-value=40 Score=43.81 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.5
Q ss_pred hhhHHHHHHhhc
Q 002497 537 KSQNIAILLRAL 548 (915)
Q Consensus 537 RaqNI~I~L~kl 548 (915)
..+||.+.++.|
T Consensus 1472 el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1472 ELRNLIQQVRDF 1483 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 22
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.65 E-value=37 Score=36.60 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSS 881 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er~~~~s 881 (915)
++..++++++.+.+++.+.+.+..+..++ .++...||+..+|+.+.+++-.+++
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~------------------e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQS------------------EGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHcccHHHHHHHHHHHHHHHHhccC
Confidence 44455555555666666666666655555 2355677888888888888765554
No 23
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=84.93 E-value=0.54 Score=52.61 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002497 126 RHVIILAISLSFLSAAVLIAAAAVFIYFRSKHR 158 (915)
Q Consensus 126 ~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~ 158 (915)
..+|.|||.+.+++|+ ||+|++++++|||+|+
T Consensus 270 ~~~vPIaVG~~La~lv-livLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLV-LIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHH-HHHHHhheeEeccccc
Confidence 5778888887777666 6666666666666654
No 24
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=84.68 E-value=1.2 Score=43.79 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 002497 133 ISLSFLSAAVLIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 133 i~~~~~~~~~~~~~~~~~~~rr~~~~~ 159 (915)
|..+++.|+ +++|+++|+.||||++.
T Consensus 70 i~gv~aGvI-g~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 70 IFGVMAGVI-GIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHS---
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHhccC
Confidence 333344444 55455555555555443
No 25
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=82.02 E-value=5.8 Score=45.97 Aligned_cols=7 Identities=43% Similarity=0.619 Sum_probs=3.7
Q ss_pred HHHHhhc
Q 002497 542 AILLRAL 548 (915)
Q Consensus 542 ~I~L~kl 548 (915)
||.|+|+
T Consensus 466 GiqLrKV 472 (518)
T KOG1830|consen 466 GIQLRKV 472 (518)
T ss_pred cchhHHH
Confidence 4555555
No 26
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=81.68 E-value=1.1e+02 Score=35.30 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=13.0
Q ss_pred cccCHHHHHHHhhhcCCC
Q 002497 494 FQLNEEMIETLFTVNNSN 511 (915)
Q Consensus 494 ~~Ld~~eLE~lF~~k~~~ 511 (915)
+-|.+.|||++...+.+.
T Consensus 355 ~plSeAEFEdiM~RNrai 372 (498)
T KOG4849|consen 355 FPLSEAEFEDIMTRNRAI 372 (498)
T ss_pred ccchHHHHHHHHhhcchh
Confidence 457788999887766543
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.65 E-value=34 Score=33.66 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHH
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQ 865 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dk 865 (915)
++....++..|+.+++++...|..+++.|||..- +. .++=..|.|.-.+|+.
T Consensus 63 ~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E--~v--eEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQRYQTLLELLGEKSE--EV--EELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--HH--HHHHHHHHHHHHHHHH
Confidence 3556678889999999999999999999998532 12 3344445555555543
No 28
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=80.44 E-value=14 Score=36.36 Aligned_cols=70 Identities=4% Similarity=0.160 Sum_probs=53.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r 872 (915)
++.+...+..|+++-+.+++.|+...+.+.....+... |+.+.-.+|..-|..++.|...|.++.+-++.
T Consensus 13 E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~ 82 (134)
T PF08336_consen 13 EEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQ 82 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45688899999999999999999888887777665543 33333357788899999999999888765544
No 29
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=78 Score=38.27 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhH-HHHHHHHHHHHHHHHHHHH
Q 002497 806 MNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIF-LVVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 806 M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF-~~l~dFl~~~dka~kE~~r 872 (915)
++.|.=.+-...=..+..+.+|..+|.++..|.-+--++-+.-.+..| ..+.+.+..++++.++++.
T Consensus 420 fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~~~~~eli~el~k~k~s~~a 487 (593)
T KOG2460|consen 420 FKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLPLLLLELISELQKRKESLGA 487 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccchHHHHHHHHHHHHHHhhhh
Confidence 334443333333445667778888999999988653322122112234 5677788888887776654
No 30
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=79.06 E-value=0.44 Score=49.69 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKHRSS 160 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~ 160 (915)
+++||+++++.+++++ ++++|+++.||+|+.
T Consensus 158 ~~laI~lPvvv~~~~~-~~~~~~~~~R~~Rri 188 (189)
T PF14610_consen 158 YALAIALPVVVVVLAL-IMYGFFFWNRKKRRI 188 (189)
T ss_pred eeEEEEccHHHHHHHH-HHHhhheeeccceec
Confidence 6888888888777444 444555555555543
No 31
>PHA03246 large tegument protein UL36; Provisional
Probab=78.83 E-value=2.6e+02 Score=39.76 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeee-ccccccccccccCCCCccHHHHHHH
Q 002497 629 DSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFK-LDTLLKLVDVKGADGKTTLLHFVVQ 707 (915)
Q Consensus 629 ~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFk-LsSL~KL~dvKs~D~k~TLLhyVVq 707 (915)
..++.+.+..+..+..+|++-++ +-..+|+-|+.--+..- |..+.||. |.+|+||.-+-. .|+.
T Consensus 1647 rrDl~~ak~al~~a~~a~~eAt~--Ra~~iLrevvea~~a~d----r~~ae~LANLKnLLRLtp~P~---------~iA~ 1711 (3095)
T PHA03246 1647 RRDNDAIKSITQRVTTAIEAAKS--RGESILKDLAEASYAAD----RETAEQLANLKNLLRLVAMPA---------HIAK 1711 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhcccCCCH---------HHHH
Confidence 34555666667777777776543 44566666666444322 33445542 555666644321 1233
Q ss_pred HHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 002497 708 EIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 708 ~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l 787 (915)
.|.+.+ . .+| .|-++.--|..|+++..+|.+.+. =|+..+..+
T Consensus 1712 AIDkA~-------------------S-a~D---------IVTQaALLL~~vEet~ELDvqAVe--------WL~hAr~II 1754 (3095)
T PHA03246 1712 AIDKAE-------------------T-AND---------IVTQAALLLTKVEETKELDTQTVE--------WLKHAESVI 1754 (3095)
T ss_pred Hhhhcc-------------------c-HHH---------HHHHHHHHHHHhhhccccCHHHHH--------HHHHHHHHh
Confidence 343321 0 112 133344447889999888887652 233344445
Q ss_pred HHHHHhh-hh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 002497 788 KLNEEIA-MK--ESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 788 ~~~~~~~-~~--e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~ 843 (915)
+...... .| +.-..|.+.+... ...+.+++.|+.+++.++..+++.+..|+-+-.
T Consensus 1755 DSHpLT~rIDg~GPm~~yaeRIDaL-~~LR~rLd~Lr~~L~~AEaaWDeaW~~F~r~~~ 1812 (3095)
T PHA03246 1755 DSHDLTVRIDESGPMTIYAERIDAL-VRLENRLAELKSELALAEVAWDDTWSTFIHDKD 1812 (3095)
T ss_pred ccCccccccCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC
Confidence 4433221 11 2345677777654 455689999999999999999999999996543
No 32
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=78.61 E-value=20 Score=37.05 Aligned_cols=7 Identities=0% Similarity=-0.045 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 002497 147 AAVFIYF 153 (915)
Q Consensus 147 ~~~~~~r 153 (915)
++|-.||
T Consensus 112 fvir~~R 118 (163)
T PF06679_consen 112 FVIRTFR 118 (163)
T ss_pred HHHHHHh
Confidence 3444445
No 33
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.59 E-value=86 Score=33.48 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc-----hhHHHHHHHHHHhc
Q 002497 626 ANFDSEVEYLKRSFETLQVACGELRKS-----RMFLKLLEAVLKTG 666 (915)
Q Consensus 626 ~~F~~~~~~l~~~l~~l~~AceeLr~S-----~~L~~lL~lVL~iG 666 (915)
..+++.+++|+..++.|...|..+.++ ..-+.+-..+..+|
T Consensus 4 ~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~ 49 (202)
T cd07606 4 QELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFG 49 (202)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999999887664 33344555555555
No 34
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=77.64 E-value=82 Score=36.88 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHh
Q 002497 549 NVTVDEVCEGLL 560 (915)
Q Consensus 549 k~s~eeI~~AIl 560 (915)
+++.+++..+++
T Consensus 469 ~vtkDDaY~~FM 480 (487)
T KOG4672|consen 469 KVTKDDAYNAFM 480 (487)
T ss_pred CCcchHHHHHHH
Confidence 445666666655
No 35
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=76.31 E-value=14 Score=38.12 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 628 FDSEVEYLKRSFETLQVACGELRK 651 (915)
Q Consensus 628 F~~~~~~l~~~l~~l~~AceeLr~ 651 (915)
.+.+++++...+..+...+..|..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~ 47 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQK 47 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556655555555543
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.99 E-value=24 Score=41.54 Aligned_cols=91 Identities=10% Similarity=0.205 Sum_probs=57.5
Q ss_pred chhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002497 745 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIA--MKESSRKFSHSMNEFLKKAEQEIISIQS 822 (915)
Q Consensus 745 lq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~--~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~ 822 (915)
++.+..+..|+..++++.+ .+.+-++++...+++++.+++...+.. .-...+.....+++--+.-++.+...+.
T Consensus 360 ~~e~~~l~~~~~~~e~~kk----~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~ 435 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKK----IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDE 435 (493)
T ss_pred HHHHHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655432 345556677777777776665443322 1223456666777777777777777777
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002497 823 QESVALSMVKEITEYFH 839 (915)
Q Consensus 823 ~~~~~~~~~kel~~YFG 839 (915)
+..++++.+++||-|+-
T Consensus 436 ~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 436 KITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHhHheehh
Confidence 77888888888888884
No 37
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=75.52 E-value=2.1 Score=42.04 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.7
Q ss_pred HHHHHHhccCCC
Q 002497 148 AVFIYFRSKHRS 159 (915)
Q Consensus 148 ~~~~~rr~~~~~ 159 (915)
++++++|||.|+
T Consensus 18 ~~~~~~rRR~r~ 29 (130)
T PF12273_consen 18 LFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHhhc
Confidence 333333444443
No 38
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.49 E-value=1.3e+02 Score=36.04 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=9.6
Q ss_pred HhCcccHHHHHHHHH
Q 002497 609 VLEIPFAFKRVDAML 623 (915)
Q Consensus 609 l~~IP~~~~RL~all 623 (915)
|...+.+..|++|-.
T Consensus 333 vvGF~dL~~R~K~Q~ 347 (508)
T KOG3091|consen 333 VVGFEDLRQRLKVQD 347 (508)
T ss_pred ccchHHHHHHHHHHH
Confidence 455566777777654
No 39
>PRK10132 hypothetical protein; Provisional
Probab=72.62 E-value=31 Score=33.36 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~ 843 (915)
.+.|..|++.|...++.+-.... .. ..+.-+...+.+...++.++.++...+.....+......+-+|-+++|=
T Consensus 14 ~e~L~~Dl~~L~~~le~ll~~~~---~~-~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 14 VQDIQNDVNQLADSLESVLKSWG---SD-AKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hh-hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 35556666666665555422221 11 1122366778888889999888887777666677777888889988763
No 40
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=70.38 E-value=23 Score=38.09 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHH----HHHHHHHHHHhh
Q 002497 811 KKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLST----LDQVCKEVGRIN 874 (915)
Q Consensus 811 ~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~----~dka~kE~~r~~ 874 (915)
..++++|+..++.+.++.+.....|.=|-+... +....|.+|+.. +++|..-+..++
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~-------e~~~~L~~lv~AQl~Yh~q~~e~L~~l~ 205 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAIKESEA-------DQYRDLTDLLDAELDYHQQSLDVLREVR 205 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888877765322 233445555443 344444444443
No 41
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=70.16 E-value=0.82 Score=43.98 Aligned_cols=41 Identities=5% Similarity=0.018 Sum_probs=1.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCCCCCC
Q 002497 132 AISLSFLSAAVLIAAAAVFIYFRSKHRSSPDKTSTSDGQRLFPPNL 177 (915)
Q Consensus 132 ai~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~ 177 (915)
.|.+++|.|+ +|-|+++|+||||.--+.- .+|+.+....++
T Consensus 28 GIGiL~VILg-iLLliGCWYckRRSGYk~L----~~k~~~~gt~~~ 68 (118)
T PF14991_consen 28 GIGILIVILG-ILLLIGCWYCKRRSGYKTL----RDKSLHAGTQST 68 (118)
T ss_dssp SSS-------------------------------------------
T ss_pred cceeHHHHHH-HHHHHhheeeeecchhhhh----hhccccccCchh
Confidence 3555555555 3336899999988654432 234555444333
No 42
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=69.81 E-value=51 Score=36.66 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
++..+.+..=++..++++.+.++.++++...+.++..-.|
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555
No 43
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=69.35 E-value=56 Score=28.19 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~ 873 (915)
.|..+..........|+..+..+...+..+...+.++.+ ..|...+..|...+++.++.+..+
T Consensus 8 ~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~------~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 8 QLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA------DAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666777777777777766543 234455555555555555544443
No 44
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=68.06 E-value=8.8 Score=40.88 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 002497 127 HVIILAISLSFLSAAVLIAAAAVFIYFRSKHRSSP 161 (915)
Q Consensus 127 ~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~~ 161 (915)
.+|+|.++..++-++ ++++++.|+|.||.+++..
T Consensus 101 ~lI~lv~~g~~lLla-~~~~~~Y~~~~Rrs~~~~~ 134 (202)
T PF06365_consen 101 TLIALVTSGSFLLLA-ILLGAGYCCHQRRSWSKKG 134 (202)
T ss_pred EEEehHHhhHHHHHH-HHHHHHHHhhhhccCCcch
Confidence 334444333233333 4435556777788776643
No 45
>PRK10404 hypothetical protein; Provisional
Probab=67.49 E-value=46 Score=31.74 Aligned_cols=72 Identities=8% Similarity=0.142 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCC
Q 002497 767 DVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESV-ALSMVKEITEYFHGNS 842 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~-~~~~~kel~~YFGEd~ 842 (915)
+.|..|++.|...++.+-..... . ..+.-+...+.....++.++.++..+++...+ +....+.+-+|-+++|
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~---~-a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGD---P-ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34455555555555544322211 0 12234567777888888888877777765443 5666667778888765
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.03 E-value=1.1e+02 Score=33.75 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=43.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 762 AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
..+.++.|...+..++..|.++++-++..+..-....+.+=...+..=+..|++++..|+..+..+++.+.++-.+-
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777776655444321111223344455555556666666666666666666665555544
No 47
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=65.57 E-value=0.63 Score=47.09 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKHRSS 160 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~ 160 (915)
|+|-|+|+|-..++|++++++|||++|+++++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecccCc
Confidence 56666666544442333444445554444443
No 48
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=65.51 E-value=1 Score=42.28 Aligned_cols=8 Identities=0% Similarity=0.169 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 002497 146 AAAVFIYF 153 (915)
Q Consensus 146 ~~~~~~~r 153 (915)
++++|||.
T Consensus 84 ~~l~w~f~ 91 (96)
T PTZ00382 84 GFLCWWFV 91 (96)
T ss_pred HHHhheeE
Confidence 34444444
No 49
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=85 Score=36.02 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002497 613 PFAFKRVDAMLYIANFDSEVEYLKRSF 639 (915)
Q Consensus 613 P~~~~RL~allf~~~F~~~~~~l~~~l 639 (915)
+.+++-|+|...-...++.+-.|.+.+
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~ 326 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSL 326 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 445555666555544554444444433
No 50
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=64.24 E-value=1.7e+02 Score=31.93 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
.++.=++.++.+....+..++.+.+..++=+.-|..+. -.+|=..|..|+...-...+++-+++|.
T Consensus 163 ~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er------~~dfk~~l~~fles~ie~qke~ie~We~ 228 (234)
T cd07664 163 QAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER------VKDFKTVIIKYLESLVQTQQQLIKYWEA 228 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666677777777777666666774321 1356666777777777777777776654
No 51
>PRK11637 AmiB activator; Provisional
Probab=63.16 E-value=2e+02 Score=33.86 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 628 FDSEVEYLKRSFETLQVACGELRK 651 (915)
Q Consensus 628 F~~~~~~l~~~l~~l~~AceeLr~ 651 (915)
.+.+++.+...|..+...+++++.
T Consensus 94 ~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 94 TQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 52
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.93 E-value=2.1e+02 Score=30.27 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
.+..=++.++.++..++..+..+.+.++.=++.|..+.. .+|=.+|.+|+..--...+++-+++|.
T Consensus 167 ~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~------~d~k~~l~~~~~~~i~~~~~~~~~We~ 232 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKV------KDFKSMLEEYAESQIEYQKKMLEAWET 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666666667754321 345556777777777777777666654
No 53
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.26 E-value=2.2e+02 Score=30.37 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 625 IANFDSEVEYLKRSFETLQVACGELRKS 652 (915)
Q Consensus 625 ~~~F~~~~~~l~~~l~~l~~AceeLr~S 652 (915)
+...+.++++|+..|+.+.+.|..+.++
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~~~~d~ 31 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIEA 31 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999888775
No 54
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=1.4e+02 Score=35.62 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Q 002497 812 KAEQEIISIQSQESVALSMV-KEITEYFHG 840 (915)
Q Consensus 812 ~Ae~ei~~Lq~~~~~~~~~~-kel~~YFGE 840 (915)
+|+++++..+..++.++... .+|=.+|+.
T Consensus 161 KAeeEl~~Aq~~fE~lN~~L~eELP~L~~s 190 (460)
T KOG3771|consen 161 KAEEELEKAQQVFEELNNELLEELPALYSS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38888888888888886654 455566653
No 55
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=61.84 E-value=4.6e+02 Score=33.92 Aligned_cols=225 Identities=14% Similarity=0.189 Sum_probs=115.2
Q ss_pred ChHHHHHHHHh----CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccc------c
Q 002497 600 GPAEKFLRAVL----EIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNR------M 669 (915)
Q Consensus 600 ~~aEqFl~~l~----~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~------L 669 (915)
.--|.|--.|. +.+.-..|.+.|.-..+|..+--........+..|-+.|+ -|+.+|+-||. .
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~-------AMraLLKSGdt~KI~FFA 1194 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS-------AMRALLKSGDTQKIRFFA 1194 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH-------HHHHHHhcCCcceEEEEe
Confidence 33455544432 3455667888887777776665444455556666666653 57788888882 3
Q ss_pred ccCCCCCceeeeeccccccccccccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhh
Q 002497 670 NVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVS 749 (915)
Q Consensus 670 N~gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~ 749 (915)
|.. +++..+-.--+.|.-|.= .|+-.++-|++ -...+. ..| ..+.
T Consensus 1195 n~s-RqkEiYImAANyLQtlDW---q~~pq~mK~I~-tFYTKg-------------------qaf-----------d~La 1239 (1416)
T KOG3617|consen 1195 NTS-RQKEIYIMAANYLQTLDW---QDNPQTMKDIE-TFYTKG-------------------QAF-----------DHLA 1239 (1416)
T ss_pred ecc-ccceeeeehhhhhhhccc---ccChHHHhhhH-hhhhcc-------------------hhH-----------HHHH
Confidence 332 122222222222222211 12222333322 111110 011 1123
Q ss_pred chhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 750 SLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALS 829 (915)
Q Consensus 750 ~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~ 829 (915)
+|. +.+|.|.++.+ +.+.+.+..+++..++-.+...+.....-.+.++.=+.+.+..|+.++..-+....
T Consensus 1240 nFY------~~cAqiEiee~----q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~ 1309 (1416)
T KOG3617|consen 1240 NFY------KSCAQIEIEEL----QTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAAD 1309 (1416)
T ss_pred HHH------HHHHHhhHHHH----hhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 333 23355666654 45566666666655544332222234455677777788888888888888888888
Q ss_pred HHHHHHhhccCCCCccccCchhhHHHH-HHHH--HHHHHHHHHHHHhhhh
Q 002497 830 MVKEITEYFHGNSAKEEAHPFRIFLVV-KEFL--STLDQVCKEVGRINER 876 (915)
Q Consensus 830 ~~kel~~YFGEd~~k~e~~p~~fF~~l-~dFl--~~~dka~kE~~r~~er 876 (915)
..+++....-|..-++..+.-++|+.| .+.+ +.|+.|..-+..++.|
T Consensus 1310 ~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1310 GIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 888887777553333233445677654 3332 3444444444444433
No 56
>PHA03291 envelope glycoprotein I; Provisional
Probab=61.20 E-value=53 Score=37.71 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hccCCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYF--RSKHRSS 160 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~r--r~~~~~~ 160 (915)
|-|||=+.|++.. +|.--++++.| ||+||..
T Consensus 289 iQiAIPasii~cV-~lGSC~Ccl~R~~rRr~r~~ 321 (401)
T PHA03291 289 IQIAIPASIIACV-FLGSCACCLHRRCRRRRRRP 321 (401)
T ss_pred heeccchHHHHHh-hhhhhhhhhhhhhhcccCCc
Confidence 4566655555444 34344555555 5544443
No 57
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=60.18 E-value=2.8 Score=36.65 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 002497 143 LIAAAAVFIYF 153 (915)
Q Consensus 143 ~~~~~~~~~~r 153 (915)
++.++.|++||
T Consensus 25 ailLIlf~iyR 35 (64)
T PF01034_consen 25 AILLILFLIYR 35 (64)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33345666667
No 58
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=60.03 E-value=6.8 Score=50.17 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=3.2
Q ss_pred HhchhHHHH
Q 002497 650 RKSRMFLKL 658 (915)
Q Consensus 650 r~S~~L~~l 658 (915)
|.++.++.|
T Consensus 633 raCKd~Khl 641 (2365)
T COG5178 633 RACKDWKHL 641 (2365)
T ss_pred HHhhhHHHH
Confidence 333333333
No 59
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.98 E-value=63 Score=35.48 Aligned_cols=14 Identities=29% Similarity=0.225 Sum_probs=7.9
Q ss_pred HHhchhHHHHHHHH
Q 002497 649 LRKSRMFLKLLEAV 662 (915)
Q Consensus 649 Lr~S~~L~~lL~lV 662 (915)
|+.|..|+.+|..-
T Consensus 4 Ls~~~~f~~FLts~ 17 (240)
T cd07667 4 LSFNEHFNVFLTAK 17 (240)
T ss_pred cccChHHHHHHcch
Confidence 34556666666554
No 60
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=59.75 E-value=3.8e+02 Score=32.28 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=35.1
Q ss_pred hhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 754 ELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKE 833 (915)
Q Consensus 754 EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ke 833 (915)
+|...-.-.+|+.+++...+++ -.++.++|+.... ..+.....+..--..|+..++.|++.+.+...+..+
T Consensus 355 ~L~~q~~kq~Is~e~fe~mn~E----re~L~reL~~i~~-----~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~ 425 (622)
T COG5185 355 ELHKQLRKQGISTEQFELMNQE----REKLTRELDKINI-----QSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQN 425 (622)
T ss_pred HHHHHHHhcCCCHHHHHHHHHH----HHHHHHHHHHhcc-----hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444566776665444332 2222222222110 123344444444455666666676666655555555
Q ss_pred HHh
Q 002497 834 ITE 836 (915)
Q Consensus 834 l~~ 836 (915)
+..
T Consensus 426 i~~ 428 (622)
T COG5185 426 ITR 428 (622)
T ss_pred hcc
Confidence 543
No 61
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=58.75 E-value=7.5 Score=47.87 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
..|+.|+.++..+|..|++..--..+.-.....||.++
T Consensus 282 ~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~ 319 (619)
T PF03999_consen 282 QNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDS 319 (619)
T ss_dssp --------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccc
Confidence 46777888888888887776644444444455556443
No 62
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=58.50 E-value=1.7e+02 Score=33.30 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=20.7
Q ss_pred chhhhhhhHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHH
Q 002497 750 SLSGELTNVRKA-AAMDSDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 750 ~ls~EL~~V~kA-Akvdle~L~sdv~kL~~gl~kv~~~l 787 (915)
.|.+.|..|... ..|+..+|...+.+++..|...++.+
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i 90 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAI 90 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555433 45666666666666555555544433
No 63
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.33 E-value=96 Score=28.64 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCC
Q 002497 768 VLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQES-VALSMVKEITEYFHGNS 842 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~-~~~~~~kel~~YFGEd~ 842 (915)
+|..++.+|...+..+...+.... .+..+...+.+...++.+..++..+..+.. ++.+....+-.|-.++|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~----~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLA----GEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 344555555555555544332110 111344455555666666665555543332 23344555556665554
No 64
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=57.64 E-value=13 Score=50.14 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=5.9
Q ss_pred Cceeccccc
Q 002497 483 AMVWDQFKS 491 (915)
Q Consensus 483 ~TIW~~l~~ 491 (915)
+.+|..+..
T Consensus 1762 ~s~W~Ri~G 1770 (2039)
T PRK15319 1762 GSVWARFKA 1770 (2039)
T ss_pred CCeEEEEec
Confidence 467877653
No 65
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.04 E-value=71 Score=34.05 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 002497 856 VKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 856 l~dFl~~~dka~kE~~r~~er 876 (915)
+++--+.|+++.++.....+|
T Consensus 103 ~KE~rK~Fdk~se~yd~al~k 123 (200)
T cd07637 103 FKETKKQFDKVREDLEIALVK 123 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665555
No 66
>PHA03265 envelope glycoprotein D; Provisional
Probab=56.84 E-value=4.8 Score=45.68 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKH-RSSP 161 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~-~~~~ 161 (915)
+-+.|.++|+.|+ +..+..+|+|||||- +|+.
T Consensus 350 ~g~~ig~~i~glv-~vg~il~~~~rr~k~~~k~~ 382 (402)
T PHA03265 350 VGISVGLGIAGLV-LVGVILYVCLRRKKELKKSA 382 (402)
T ss_pred cceEEccchhhhh-hhhHHHHHHhhhhhhhhhhh
Confidence 6666777787777 666777888887764 4443
No 67
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=56.80 E-value=1.7e+02 Score=32.63 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=44.7
Q ss_pred hhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 751 LSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSM 830 (915)
Q Consensus 751 ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~ 830 (915)
+.+.|..++. ++++++-|.+-+.++....+..+..- ....-.+.+...++..+.+++.++..++++.+.
T Consensus 154 ~~~~l~DLes-a~vkV~WLR~~L~Ei~Ea~e~~~~~~----------~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke 222 (269)
T PF05278_consen 154 MIATLKDLES-AKVKVDWLRSKLEEILEAKEIYDQHE----------TREEEKEEKDRKLELKKEELEELEEELKQKEKE 222 (269)
T ss_pred HHHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 56777777766655544333222100 011223566677777777777777777777777
Q ss_pred HHHHHhhc
Q 002497 831 VKEITEYF 838 (915)
Q Consensus 831 ~kel~~YF 838 (915)
++++..-+
T Consensus 223 ~~e~~~~i 230 (269)
T PF05278_consen 223 VKEIKERI 230 (269)
T ss_pred HHHHHHHH
Confidence 77776665
No 68
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=56.60 E-value=85 Score=27.04 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~ 788 (915)
++.|..||..|...+..|...++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777666554
No 69
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=56.45 E-value=3.7 Score=45.96 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC
Q 002497 237 PSGYHKLGSPELNPL 251 (915)
Q Consensus 237 ~~~~~k~~spel~pl 251 (915)
++.|.++++||=.||
T Consensus 223 pp~y~~~~~~~~~p~ 237 (290)
T PF05454_consen 223 PPEYPNSNMPESTPL 237 (290)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCc
Confidence 467999998887655
No 70
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=56.20 E-value=18 Score=28.60 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=5.7
Q ss_pred HHHHHHH--HhccCC
Q 002497 146 AAAVFIY--FRSKHR 158 (915)
Q Consensus 146 ~~~~~~~--rr~~~~ 158 (915)
++.+|+| ++||++
T Consensus 20 ii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 20 IICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHcccc
Confidence 3444443 344443
No 71
>PRK11637 AmiB activator; Provisional
Probab=55.90 E-value=1.7e+02 Score=34.36 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVALSMVKEITE 836 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~ 836 (915)
..+..=+...+.+|..+++.+....+.+++.+.
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666655543
No 72
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=55.56 E-value=3.1e+02 Score=29.89 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 002497 811 KKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRIN 874 (915)
Q Consensus 811 ~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~ 874 (915)
++|+.+|+..++.+.+..+..+.+|.=+-+.... +...+...|..-+.-+++|.+.+..++
T Consensus 157 ~kae~elr~A~~kf~~~~E~a~~~M~~il~~~~e---~l~~L~~lv~AQl~Yh~q~~e~L~~l~ 217 (220)
T cd07617 157 KKAEHELRVAQTEFDRQAEVTRLLLEGISSTHVN---HLRCLHEFVEAQATYYAQCYRHMLDLQ 217 (220)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999988888777777766554221 112233334444444556655555554
No 73
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=55.53 E-value=12 Score=42.10 Aligned_cols=12 Identities=17% Similarity=0.359 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 002497 143 LIAAAAVFIYFR 154 (915)
Q Consensus 143 ~~~~~~~~~~rr 154 (915)
|++|..+|.|||
T Consensus 272 MvIIYLILRYRR 283 (299)
T PF02009_consen 272 MVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 74
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=54.85 E-value=7.8 Score=34.88 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=2.8
Q ss_pred HHHHHHhcc
Q 002497 148 AVFIYFRSK 156 (915)
Q Consensus 148 ~~~~~rr~~ 156 (915)
.++++||++
T Consensus 20 ~~~~~rr~~ 28 (75)
T PF14575_consen 20 VIVCFRRCK 28 (75)
T ss_dssp HHCCCTT--
T ss_pred EEEEEeeEc
Confidence 333334433
No 75
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=54.72 E-value=2.2e+02 Score=35.89 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHH-HHHHHHHHHHHHHHHHhhhh
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVV-KEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l-~dFl~~~dka~kE~~r~~er 876 (915)
++..+.+.+.|++.++.+++.++.|-.=.|||. ...+|..+ ++-..+++.+++.+.++++.
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedR------W~~vFr~l~~q~~~m~esver~~~kl~~~ 298 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKELIEDR------WNIVFRNLGRQAQKMCESVERSLSKLQEA 298 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344444445556666666666666655555431 22344332 33444444444444444443
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.46 E-value=1.4e+02 Score=32.51 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=44.4
Q ss_pred hhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 753 GELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVK 832 (915)
Q Consensus 753 ~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k 832 (915)
.+.........-.++.+..+-.+|...++.++.+++.- ..+.+.+...+...+.++..|+.+.+.+...-.
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L---------~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENL---------EVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444456667777777777777776666533 345666777777777777777776666654443
Q ss_pred HH
Q 002497 833 EI 834 (915)
Q Consensus 833 el 834 (915)
++
T Consensus 102 ~l 103 (251)
T PF11932_consen 102 EL 103 (251)
T ss_pred HH
Confidence 33
No 77
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=54.40 E-value=3.1e+02 Score=29.60 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=29.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc-----hhHHHHHHHHHHhcccc
Q 002497 627 NFDSEVEYLKRSFETLQVACGELRKS-----RMFLKLLEAVLKTGNRM 669 (915)
Q Consensus 627 ~F~~~~~~l~~~l~~l~~AceeLr~S-----~~L~~lL~lVL~iGN~L 669 (915)
.+++.++..+..++.+.++|..+.++ ...+.+-+.+-.+|+..
T Consensus 6 ~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~ 53 (215)
T cd07604 6 ALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKA 53 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 45677777788888888888887765 33455555666666533
No 78
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=54.28 E-value=3.1e+02 Score=29.50 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
.+..=+..++.++...+..++.+....+.=+..|..+- -.+|=..|..|+...-...+++-+.+|.
T Consensus 153 ~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~er------v~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 153 QAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNR------VKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666667777777777777766666775322 1345556777777776666776666553
No 79
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.22 E-value=2.9e+02 Score=30.88 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=20.9
Q ss_pred eeeeccccccccccccC--------CCCccHHHHHHHHH
Q 002497 679 HAFKLDTLLKLVDVKGA--------DGKTTLLHFVVQEI 709 (915)
Q Consensus 679 ~GFkLsSL~KL~dvKs~--------D~k~TLLhyVVq~I 709 (915)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+++
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~ 144 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEV 144 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 56777766788888863 34566777766554
No 80
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=54.02 E-value=2.3e+02 Score=27.93 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHh
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~ 873 (915)
+..++.++...++.+..+...+..-+.-|.+.. -..|...|..|+.......++..++
T Consensus 130 l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~------~~~~~~~L~~~~~~q~~~~~~~~~~ 187 (194)
T cd07307 130 LAEAEEELQEAKEKYEELREELIEDLNKLEEKR------KELFLSLLLSFIEAQSEFFKEVLKI 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445555555556555555555555554444321 1245666777887777666666554
No 81
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.41 E-value=76 Score=33.74 Aligned_cols=112 Identities=11% Similarity=0.202 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEIAMK--ESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~~~~--e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~ 843 (915)
++.+..++.+|+..|+++.+.++..-+.+.. .....|...+..|-..+..+- .+..-+.+.-..+++++.|+-.--.
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~-~i~~~l~kF~~~l~el~~~~~~L~~ 82 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDS-LVQNCLNKFIQALQEMNNFHTILLD 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666555444322111111 123456666666554442221 2222233333344444444431100
Q ss_pred ccc---cCchhhH-----HHHHHHHHHHHHHHHHHHHhhhhhc
Q 002497 844 KEE---AHPFRIF-----LVVKEFLSTLDQVCKEVGRINERTI 878 (915)
Q Consensus 844 k~e---~~p~~fF-----~~l~dFl~~~dka~kE~~r~~er~~ 878 (915)
..+ ..|.+=| ..+++--+.|+++.++.....+|-+
T Consensus 83 q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~ 125 (200)
T cd07603 83 QAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNA 125 (200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0011111 2245555666777777766666643
No 82
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.42 E-value=88 Score=29.93 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=49.0
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 760 KAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITE 836 (915)
Q Consensus 760 kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~ 836 (915)
.|.+-+++.|.+.+.+.++.+..++..++.-. ...=...+.--+.+.+.+++.+...++.+.....-|++
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LP-------t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLP-------TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888999998888886542 12223467777778888888888887766555554444
No 83
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=52.32 E-value=2e+02 Score=31.60 Aligned_cols=29 Identities=7% Similarity=-0.086 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 811 KKAEQEIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 811 ~~Ae~ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
...+++++..+..+.++.+.+...|.=|-
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~~~M~~~l 189 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALATDMYEFL 189 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777666655554443
No 84
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=51.57 E-value=1.4e+02 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQE 824 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~ 824 (915)
...+.+.|..-..++...+..+...+
T Consensus 28 s~~lR~~i~~~~~~~~~l~k~~~~~l 53 (102)
T PF14523_consen 28 SQELREKIHQLIQKTNQLIKEISELL 53 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666665555555554444433
No 85
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=50.89 E-value=39 Score=38.30 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhccCCCC
Q 002497 143 LIAAAAVFIYFRSKHRSS 160 (915)
Q Consensus 143 ~~~~~~~~~~rr~~~~~~ 160 (915)
.++++++.|||-+|+.+.
T Consensus 213 Aliva~~cW~Rlqr~~rl 230 (341)
T PF06809_consen 213 ALIVAGYCWYRLQREIRL 230 (341)
T ss_pred HHHHhhheEEEecccccc
Confidence 454677777775444333
No 86
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=50.80 E-value=16 Score=27.22 Aligned_cols=8 Identities=0% Similarity=0.056 Sum_probs=3.2
Q ss_pred HHHHHHhc
Q 002497 148 AVFIYFRS 155 (915)
Q Consensus 148 ~~~~~rr~ 155 (915)
++++++||
T Consensus 24 ~~~~~~~r 31 (34)
T TIGR01167 24 GGLLLRKR 31 (34)
T ss_pred HHHHheec
Confidence 33444433
No 87
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=50.67 E-value=52 Score=34.20 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 002497 801 KFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRIN 874 (915)
Q Consensus 801 ~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~ 874 (915)
.|...+..-.+.|.+++.-+.. ...+++.++-+|-+.. + .++|..|-+.++.+.+.|.++....
T Consensus 24 tFi~ALer~re~a~~~~~pV~t-----I~QV~~y~eh~~~nst----D-rril~~FL~iv~dL~~l~~~~~~~~ 87 (171)
T PF15120_consen 24 TFIAALERCRENAHDRTRPVST-----IGQVQKYMEHHCNNST----D-RRILEMFLDIVRDLSRLCQQLESLI 87 (171)
T ss_pred HHHHHHHhchhcccCCcccccc-----HHHHHHHHHHHhcccc----c-HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4666666666666555444332 1233444444443332 2 5889998899999999998877643
No 88
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=50.61 E-value=32 Score=41.07 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q 002497 133 ISLSFLSAAVLIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 133 i~~~~~~~~~~~~~~~~~~~rr~~~~~ 159 (915)
|.+++++++++|.++++|.||.||..+
T Consensus 159 ~~~~~v~~l~~lvi~~~~~~r~~k~~~ 185 (534)
T KOG3653|consen 159 IPLLLVSLLAALVILAFLGYRQRKNAR 185 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333444444466678999999777644
No 89
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.33 E-value=12 Score=41.84 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=12.2
Q ss_pred cchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 125 HRHVI--ILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 125 ~~~~~--~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
.++.| .+||++.++.|+ +++++.+.|
T Consensus 226 ~G~VVlIslAiALG~v~ll---~l~Gii~~~ 253 (281)
T PF12768_consen 226 RGFVVLISLAIALGTVFLL---VLIGIILAY 253 (281)
T ss_pred ceEEEEEehHHHHHHHHHH---HHHHHHHHH
Confidence 44544 444555555444 444444444
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.20 E-value=2.6e+02 Score=27.55 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVALSMVKEITE 836 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~ 836 (915)
+.+-..+.+-.++++.|+.+...+++.|+.-+.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888999999999999999987654
No 91
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=50.12 E-value=2.2e+02 Score=26.60 Aligned_cols=63 Identities=3% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 768 VLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVK 832 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k 832 (915)
.|..+|..|...+..|+......-.. .+ ......+.|..-+..+......++..++.+.....
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l~~-~~-~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELLTP-PD-ADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444555555554444433321100 01 12345566666666666666666666665544433
No 92
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=49.87 E-value=2.4e+02 Score=30.63 Aligned_cols=175 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCChHHHHHH---HhhcccCCCCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002497 569 AELLESLLKMAPTKEEERKI---KEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVA 645 (915)
Q Consensus 569 ~e~Le~Llk~lPt~EE~~~L---ke~~~d~ps~L~~aEqFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~A 645 (915)
.+.+..|.++.|.-+|+... +.|..|. ..+.+-| ...|-..++........+..+
T Consensus 79 ~~l~~~l~~l~~~~~e~~~Yy~~k~Y~~D~--------------------~ak~kel--h~~l~~~~~~~~~a~~~~~~~ 136 (276)
T PF12889_consen 79 KELLPALKELYPLINELDSYYDSKDYKDDN--------------------FAKAKEL--HAKLLAAYEEFKAAYDAFDAA 136 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHTT---------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCch--------------------hHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCc
Q 002497 646 CGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTK 725 (915)
Q Consensus 646 ceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~ 725 (915)
.+.+.+......|=. +|. .|+..-.+.+ +.+..
T Consensus 137 l~~~~~~~~~~~l~~-------------------------------lk~-~g~~~~y~~~-~~~~~-------------- 169 (276)
T PF12889_consen 137 LEKINDERRKEQLEA-------------------------------LKK-EGKMIIYYML-KLMID-------------- 169 (276)
T ss_dssp HHHHHHHHH-------------------------------------TTT-TTHHHHHHHH-HHHHH--------------
T ss_pred HHHHHHHHHhHHHHH-------------------------------Hhh-HHHHHHHHHH-HHHHH--------------
Q ss_pred ccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 002497 726 TEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHS 805 (915)
Q Consensus 726 ~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~ 805 (915)
...|.+.| .=......|...+...+.+|+.-++..+.......... .-..|...
T Consensus 170 ----------------------a~~i~~~l-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 223 (276)
T PF12889_consen 170 ----------------------AEQIIDEL-QSDDNQKFDMAALDAALAELEKLLKDLKKLTKENYDDE---MLSSFMSS 223 (276)
T ss_dssp ----------------------HHHHHHHH-T-TTS--HHHHHHH--HHHHHHHHHHHHTS---TT-H-------HHHHH
T ss_pred ----------------------HHHHHHHH-hhccCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccch---hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhc
Q 002497 806 MNEFLKKAEQEIISIQS----------------QESVALSMVKEITEYF 838 (915)
Q Consensus 806 M~~Fl~~Ae~ei~~Lq~----------------~~~~~~~~~kel~~YF 838 (915)
...|+..++.-|..++. ....+.+.|.++..-|
T Consensus 224 ~~~~~~~~~~~i~~vr~~~~~~~~~~~~~~~~~~~~~l~~~yn~lI~~y 272 (276)
T PF12889_consen 224 ADSFKSSAKSFIRRVRDLQQSESNWMSGEPTEGSPEKLLKSYNDLISDY 272 (276)
T ss_dssp HHHHHHHHHHHHHHHHH-------------HCTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCCCCCHHHHHHHHHHHHHHh
No 93
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.22 E-value=2e+02 Score=30.76 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l 787 (915)
++.+..||.+|+..|+++.+.+
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~ 25 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLG 25 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 4556666666666666665544
No 94
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=49.21 E-value=2.3e+02 Score=26.50 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002497 767 DVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~ 788 (915)
..+..++.++..+|..|...+.
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~ 25 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVA 25 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 95
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.19 E-value=1.5e+02 Score=34.14 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCCCC
Q 002497 803 SHSMNEFLKKAEQEIISIQ-----SQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 803 ~~~M~~Fl~~Ae~ei~~Lq-----~~~~~~~~~~kel~~YFGEd~~ 843 (915)
.++++.+.++|.++.+.++ +-.....-+|+++++-|.+|-+
T Consensus 269 iDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~a 314 (365)
T KOG2391|consen 269 IDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALDLA 314 (365)
T ss_pred hHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhH
Confidence 4566666666666555543 2233334567777776666554
No 96
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=48.78 E-value=2.6e+02 Score=34.67 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVKLNEEI-----A--MKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEIT 835 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~~~~~~-----~--~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~ 835 (915)
+.|++.|+.++..-...|.+-+......... . .......-...|..-++.+..+|+.|-+..+.+...|-+++
T Consensus 14 ~~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vy 93 (629)
T KOG0963|consen 14 RFDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVY 93 (629)
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5667777766666666665554433222110 0 11122334567788889999999999999999999999999
Q ss_pred hhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 002497 836 EYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINE 875 (915)
Q Consensus 836 ~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~e 875 (915)
+-.+|-|+ |.-.+.....-+...+++.+|++++.+
T Consensus 94 e~L~eaPD-----P~pll~sa~~~l~k~~~~~~e~~~lk~ 128 (629)
T KOG0963|consen 94 EKLIEAPD-----PVPLLASAAELLNKQQKASEENEELKE 128 (629)
T ss_pred HHHhhCCC-----CchHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 99987653 445566666666666666666665543
No 97
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=48.17 E-value=7.3 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~ 159 (915)
|.+-+.+.+++++ |.+.|.|||.-.|+
T Consensus 11 IlVF~lVglv~i~----iva~~iYRKw~aRk 37 (43)
T PF08114_consen 11 ILVFCLVGLVGIG----IVALFIYRKWQARK 37 (43)
T ss_pred eeehHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3443444444444 77888998665444
No 98
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=48.09 E-value=62 Score=33.19 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 768 VLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFS--HSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~--~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
....+..+|++.+.++++++.... ..|+|. .+++.=+++.++|++++++........++....++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS------~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAIS------AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-------TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888777775432 245564 35566777777777777777777766666665544
No 99
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=47.89 E-value=2.8e+02 Score=30.40 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 771 SEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVAL 828 (915)
Q Consensus 771 sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~ 828 (915)
.++.++.+++..|-..+...-..=..+....|...|+.||+.=-.-.+.+-.+++.+.
T Consensus 176 ~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~ 233 (237)
T PF10456_consen 176 QEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQAL 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776655533211111223567888888888765444444444444443
No 100
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=47.83 E-value=3.4e+02 Score=35.70 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 812 KAEQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 812 ~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
+|..++.+||-.-+......++||+--..+
T Consensus 1319 KAYP~M~QlQ~ksealI~qLRelC~~h~~~ 1348 (1439)
T PF12252_consen 1319 KAYPAMVQLQFKSEALIIQLRELCEAHQDN 1348 (1439)
T ss_pred hhchHHHHHhhhhHHHHHHHHHHHHHhhHH
Confidence 455556666555555555556666554433
No 101
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=47.66 E-value=80 Score=37.02 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHH
Q 002497 814 EQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLD 864 (915)
Q Consensus 814 e~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~d 864 (915)
+++..+||..+..-++.-..+|....|..+..+++-.+||.-+.+|-..+.
T Consensus 291 reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~ 341 (552)
T KOG2129|consen 291 REENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVE 341 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCcee
Confidence 345555666665555555667777777655556666778777777766544
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.61 E-value=6.3e+02 Score=31.21 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 803 SHSMNEFLKKAEQEIISIQSQESVA 827 (915)
Q Consensus 803 ~~~M~~Fl~~Ae~ei~~Lq~~~~~~ 827 (915)
.-.|..-+..|++.++.++..+++|
T Consensus 505 ~l~~~~~m~~a~~~v~s~e~el~~~ 529 (581)
T KOG0995|consen 505 KLVLNTSMKEAEELVKSIELELDRM 529 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777666665554
No 103
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.53 E-value=2.5e+02 Score=30.81 Aligned_cols=20 Identities=10% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 002497 821 QSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 821 q~~~~~~~~~~kel~~YFGE 840 (915)
++.+++|..++.++-.+|+.
T Consensus 152 e~El~~A~~LL~~v~~~~~~ 171 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWFQK 171 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566677777777788853
No 104
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=47.50 E-value=5.7 Score=39.11 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=0.0
Q ss_pred HHHHHHhccCC
Q 002497 148 AVFIYFRSKHR 158 (915)
Q Consensus 148 ~~~~~rr~~~~ 158 (915)
.|++|||.|||
T Consensus 97 g~lv~rrcrrr 107 (129)
T PF12191_consen 97 GFLVWRRCRRR 107 (129)
T ss_dssp -----------
T ss_pred HHHHHhhhhcc
Confidence 44555544443
No 105
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=46.97 E-value=22 Score=35.60 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=7.9
Q ss_pred cccccCCCCC--CCCcch
Q 002497 112 SSLLFPHPPS--KSAHRH 127 (915)
Q Consensus 112 s~l~~p~~~~--~~~~~~ 127 (915)
-.+.+|.+.+ +.+-|-
T Consensus 6 ~DI~~P~~vswwP~a~GW 23 (146)
T PF14316_consen 6 RDIHLPPPVSWWPLAPGW 23 (146)
T ss_pred CCCCCCCCCCCCCccHHH
Confidence 3445555555 444444
No 106
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.54 E-value=3.9e+02 Score=28.47 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
.+..=++.++.++...+..++.+.+.+++=+..|..+.. .+|=..|.+|+...-...+++.+.+|+
T Consensus 147 ~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~------~dfk~~l~~~~e~~ie~~k~~ie~We~ 212 (216)
T cd07627 147 SLLSELEEAERRASELKKEFEEVSELIKSELERFERERV------EDFRNSVEIYLESAIESQKELIELWET 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455667777777777777777777766667753321 345567788888887888888777765
No 107
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=46.43 E-value=3e+02 Score=27.06 Aligned_cols=32 Identities=3% Similarity=0.065 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMV 831 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ 831 (915)
+.....|..-+..+...+..++..++.+....
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666666666666554443
No 108
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=46.39 E-value=23 Score=44.19 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhc
Q 002497 143 LIAAAAVFIYFRS 155 (915)
Q Consensus 143 ~~~~~~~~~~rr~ 155 (915)
.|++++|+|+|||
T Consensus 859 ~LaAla~lLrRRr 871 (872)
T COG3889 859 GLAALALLLRRRR 871 (872)
T ss_pred HHHHHHHHHHhhc
Confidence 3334555555554
No 109
>PRK09039 hypothetical protein; Validated
Probab=46.05 E-value=1.4e+02 Score=34.36 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=26.2
Q ss_pred hhhhhhhHHHh---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 751 LSGELTNVRKA---AAMDSDVLSSEVAKLAAGITKIMEVVKLNE 791 (915)
Q Consensus 751 ls~EL~~V~kA---Akvdle~L~sdv~kL~~gl~kv~~~l~~~~ 791 (915)
+..+|...+.. +.-++..|.++|..|+..+..++.+|+..+
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544432 234567777888888888888877776554
No 110
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.01 E-value=2.9e+02 Score=29.54 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 002497 856 VKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 856 l~dFl~~~dka~kE~~r~~er 876 (915)
+++--+.||++..+.....+|
T Consensus 105 vKe~kK~FdK~s~~yd~al~K 125 (202)
T cd07606 105 VKDARRRFDKASLDYEQARSK 125 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555544333
No 111
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=45.61 E-value=2.5e+02 Score=30.30 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=7.9
Q ss_pred hhhhhHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKK 812 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~ 812 (915)
+-.|.+.|..+++.
T Consensus 49 q~~~~e~l~~lY~p 62 (211)
T cd07588 49 SKTLSETLKELYEP 62 (211)
T ss_pred HHHHHHHHHHHhCC
Confidence 44566666666643
No 112
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=45.58 E-value=2.2e+02 Score=25.40 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITE 836 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~ 836 (915)
..++++|..-..+|...+...+.+++.. +.+....|+..+ ++|..|+.....+...+.++-.
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~eLr~~-----------V~~nY~~fI~as-~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEELRKL-----------VYENYRDFIEAS-DEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777532 444555666544 4555666666555555555443
No 113
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.38 E-value=2.2e+02 Score=28.14 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002497 767 DVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEY 837 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~Y 837 (915)
+.|..++..++-.+.+.+..++.+... .+.-+.....+..-++.++.+|..|+.++..+....+.-.+|
T Consensus 49 e~~l~~l~~~e~~~~k~q~~~~~n~~e--~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ey 117 (139)
T PF05615_consen 49 ERLLKELAQFEFSILKSQLILEMNKRE--RENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEY 117 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666665555443211 122455666777777888888888888888776665554433
No 114
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.10 E-value=3.8e+02 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 799 SRKFSHSMNEFLKKAEQ-EIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~-ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
.++-.+.++.|+..+.. -+..+....+...+.++.+-.|+.
T Consensus 44 kGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~ 85 (204)
T PF04740_consen 44 KGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQS 85 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45556677777776433 333344444444444444444443
No 115
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=44.74 E-value=18 Score=42.77 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=8.9
Q ss_pred CcccccCCCCCCcC
Q 002497 273 DNEVKNITTEEDED 286 (915)
Q Consensus 273 ~~~~~~~~~~~~~~ 286 (915)
..|+|.+|-..||.
T Consensus 222 ~mE~G~IsV~~DE~ 235 (465)
T PF01690_consen 222 DMEFGSISVSLDEH 235 (465)
T ss_pred ceeeeeEEEEEecc
Confidence 56777766656554
No 116
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.62 E-value=2.6e+02 Score=34.71 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=46.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALS----MVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINE 875 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~----~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~e 875 (915)
+.-.+.+..+++..+.++..|+.+.+.... .|+.+-.-... + +....+-...++.+-...+.+..|++...|
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~---~-~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee 468 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASN---R-ESESKQKLQEIKELREEIKEIEEEIRQKEE 468 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh---c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445588999999999999999988877644 33333322221 1 112234566677777777777777766555
Q ss_pred h
Q 002497 876 R 876 (915)
Q Consensus 876 r 876 (915)
.
T Consensus 469 ~ 469 (594)
T PF05667_consen 469 L 469 (594)
T ss_pred H
Confidence 3
No 117
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=44.15 E-value=2.1e+02 Score=24.56 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 002497 798 SSRKFSHSMNEFLKKAEQEIISIQ 821 (915)
Q Consensus 798 ~~d~F~~~M~~Fl~~Ae~ei~~Lq 821 (915)
..+.|.+.+..|......-+..|.
T Consensus 45 a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 45 AADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777766655544443333
No 118
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=44.08 E-value=13 Score=43.06 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=20.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCC
Q 002497 122 KSAHRHVIILAISLSFLSAAVLIAAAAVFIY-FRSKHRS 159 (915)
Q Consensus 122 ~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~~-rr~~~~~ 159 (915)
.+...+.|++||.++++-|+ ++ .++||++ ||||...
T Consensus 381 ~~~~~~~i~~avl~p~~il~-~~-~~~~~~~v~rrr~~~ 417 (436)
T PTZ00208 381 RHQRTAMIILAVLVPAIILA-II-AVAFFIMVKRRRNSS 417 (436)
T ss_pred hhhhhHHHHHHHHHHHHHHH-HH-HHHhheeeeeccCCc
Confidence 34466767777777766555 44 4445555 4554433
No 119
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=43.97 E-value=1.9e+02 Score=34.49 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002497 807 NEFLKKAEQEIISIQSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 807 ~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE 840 (915)
+.|+..-+..+..|+++++++.+.|..+-.+--+
T Consensus 291 QqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~ 324 (424)
T PF03915_consen 291 QQFLKLQEDLLSDLKEDLKKASETFALVEQCTEE 324 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777778888888888888887766665544
No 120
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.53 E-value=45 Score=36.51 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhccCC
Q 002497 133 ISLSFLSAAVLIAAAA-VFIYFRSKHR 158 (915)
Q Consensus 133 i~~~~~~~~~~~~~~~-~~~~rr~~~~ 158 (915)
|+.++|++++|+++.. +||||||-.+
T Consensus 4 ~v~vlVaa~llV~~i~l~l~~r~raA~ 30 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLWKRRRAAR 30 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344444442333333 4444444444
No 121
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=43.09 E-value=1.3e+02 Score=35.39 Aligned_cols=6 Identities=33% Similarity=0.357 Sum_probs=2.4
Q ss_pred CCCCCC
Q 002497 35 FPVPTT 40 (915)
Q Consensus 35 ~p~~~~ 40 (915)
|..++.
T Consensus 299 ~~rPt~ 304 (518)
T KOG1830|consen 299 VVRPTQ 304 (518)
T ss_pred CCCCCC
Confidence 444443
No 122
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=42.69 E-value=2.6e+02 Score=27.87 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHh
Q 002497 818 ISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 818 ~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~ 873 (915)
..|+....++.+.-.++++=|.+.. ..|.+|+..|...++.....
T Consensus 99 ~~L~~~~~e~eeeSe~lae~fl~g~-----------~d~~~Fl~~f~~~R~~yH~R 143 (150)
T PF07200_consen 99 ARLQAAASEAEEESEELAEEFLDGE-----------IDVDDFLKQFKEKRKLYHLR 143 (150)
T ss_dssp HHHHHHHHHHHHHHHHHC-S-SSSH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666665321 13789999999888876653
No 123
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.65 E-value=2.2e+02 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 808 EFLKKAEQEIISIQSQESVALSMVKEIT 835 (915)
Q Consensus 808 ~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~ 835 (915)
.+.+..+.+++.++..++++.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666666666555
No 124
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.49 E-value=3.5e+02 Score=29.31 Aligned_cols=108 Identities=8% Similarity=0.122 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHH-----------------HHHHHHHHHHHHHH
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMK--ESSRKFSHSMNEF-----------------LKKAEQEIISIQSQ 823 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~--e~~d~F~~~M~~F-----------------l~~Ae~ei~~Lq~~ 823 (915)
+-.++++..|+.+|++.|+++.+.++..-..+.. .....|...+.+| +.+-..-+.+|...
T Consensus 1 ~~~l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~ 80 (215)
T cd07601 1 RSLLNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTM 80 (215)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 824 ESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 824 ~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
...+.....+++..==+.--+ .++ ..++|--+.||++.++.....+|
T Consensus 81 ~~~L~~q~~~~l~~pL~~F~k-----~Dl-~~vKe~kK~FdK~s~~~d~al~K 127 (215)
T cd07601 81 HSTLSSQLADTVLHPISQFME-----SDL-AEIMTLKELFKAASNDHDGVLSK 127 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHh-HHHHHHHHHHHHHhHHHHHHHHH
No 125
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.46 E-value=1.1e+02 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002497 768 VLSSEVAKLAAGITKIME 785 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~ 785 (915)
.|.+++.+++..+..++.
T Consensus 4 elEn~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 4 ELENELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 126
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=41.94 E-value=26 Score=33.81 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=10.3
Q ss_pred HHHHHHHHHHH-hccCCCCC
Q 002497 143 LIAAAAVFIYF-RSKHRSSP 161 (915)
Q Consensus 143 ~~~~~~~~~~r-r~~~~~~~ 161 (915)
|+.++.++.|| ++|+.|..
T Consensus 13 l~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 13 LSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 33345667777 55554443
No 127
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=41.76 E-value=33 Score=39.57 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 002497 125 HRHVIILAISLSFLSAAVLIAAAAVFIYFRSKHRSSPDKTS 165 (915)
Q Consensus 125 ~~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~ 165 (915)
+-.+++.||-+.+++|+ +++|+.++++||-++.++..+++
T Consensus 295 ~df~~tfaIpl~Valll-~~~La~imc~rrEg~~~rd~~ts 334 (449)
T KOG4482|consen 295 GDFLHTFAIPLGVALLL-VLALAYIMCCRREGQKKRDDKTS 334 (449)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccccccccch
Confidence 55667888888888777 77788888888777766655554
No 128
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=41.50 E-value=1.8e+02 Score=31.26 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc--------cccCchhhHH-HHHHHHHHHHHHHHHHHH
Q 002497 803 SHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAK--------EEAHPFRIFL-VVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 803 ~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k--------~e~~p~~fF~-~l~dFl~~~dka~kE~~r 872 (915)
.+++..-+++++..+...+.++..+...+..+...|-++-.. ++.+ -.||. .|+.|...+..+|-....
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~R-i~~lk~~l~~~a~~~s~~cv~~d~ 229 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEER-IQFLKSNCWTFANNISTLCVDDDE 229 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCcHH
Confidence 356677777777777778888888877777777666544321 1111 23454 477777777777754433
No 129
>PHA03246 large tegument protein UL36; Provisional
Probab=41.34 E-value=3e+02 Score=39.24 Aligned_cols=76 Identities=5% Similarity=0.019 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-h------hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEE-I------AMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~-~------~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
++.+...+.+++..++++...++.... . ......|.+.+.+-+|+.+-.....+|-..--.....|.++..=.
T Consensus 1869 le~f~~t~~~~e~~~~rl~~l~~rIp~E~~~d~Lr~Ll~eFDaiak~LPkW~~~~~~~yr~Ll~lRLgLYaaYa~~~~g~ 1948 (3095)
T PHA03246 1869 LDAFLDSMKEIEDTQKQMEILCSKIPLTFSLNDLRAISSQFDDIAKRLPKWYVKQVGRYSRLIKLRLALYAAYSNASTGP 1948 (3095)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 444555555555666555544432210 0 011123455556667776666666666655556667777776544
Q ss_pred cCC
Q 002497 839 HGN 841 (915)
Q Consensus 839 GEd 841 (915)
|++
T Consensus 1949 ~g~ 1951 (3095)
T PHA03246 1949 IGD 1951 (3095)
T ss_pred CCC
Confidence 444
No 130
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=41.19 E-value=25 Score=41.24 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=9.2
Q ss_pred CCCChHHHHHHHH
Q 002497 597 FKLGPAEKFLRAV 609 (915)
Q Consensus 597 s~L~~aEqFl~~l 609 (915)
.+..-+|||....
T Consensus 455 ~EfpvPEQfkt~~ 467 (480)
T KOG2675|consen 455 VEFPVPEQFKTKF 467 (480)
T ss_pred ccccChHHHhhhc
Confidence 5667788887554
No 131
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=40.75 E-value=4.2e+02 Score=28.95 Aligned_cols=167 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh-----------chhH----------HHHHH-HHHHhccccccCCCCCceeeeec
Q 002497 626 ANFDSEVEYLKRSFETLQVACGELRK-----------SRMF----------LKLLE-AVLKTGNRMNVGTNRGDAHAFKL 683 (915)
Q Consensus 626 ~~F~~~~~~l~~~l~~l~~AceeLr~-----------S~~L----------~~lL~-lVL~iGN~LN~gt~rG~A~GFkL 683 (915)
.+++.+++..+..++.|....++..+ ..++ ..+|+ ..+..||-|-.++.-|.|--=-=
T Consensus 20 ~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S~~g~aL~~~g 99 (229)
T cd07594 20 ENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGTAYGSALIKVG 99 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q ss_pred cccccccccccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhh-hhhhHHHh-
Q 002497 684 DTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSG-ELTNVRKA- 761 (915)
Q Consensus 684 sSL~KL~dvKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~-EL~~V~kA- 761 (915)
+...||++++. .+-+.|.+.++.. +..+.+ ||..+.++
T Consensus 100 ~a~~kia~~~~-----~~~~~i~~~fl~p-----------------------------------L~~~l~~dik~i~k~R 139 (229)
T cd07594 100 QAQKKLGQAER-----EFIQTSSSNFLQP-----------------------------------LRNFLEGDMKTISKER 139 (229)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHH
Q ss_pred -----hcCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 762 -----AAMDSDVLSSEVA---------KLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVA 827 (915)
Q Consensus 762 -----Akvdle~L~sdv~---------kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~ 827 (915)
.++|+|...+.++ .++..|+..+..+.... +.....|..+++.=-+.+..|.+..+.-
T Consensus 140 KkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~--------E~a~~~M~~i~~~~~~~~~~L~~lv~AQ 211 (229)
T cd07594 140 KLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQA--------EITKLLLEGISSTHANHLRCLRDFVEAQ 211 (229)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhccC
Q 002497 828 LSMVKEITEYFHG 840 (915)
Q Consensus 828 ~~~~kel~~YFGE 840 (915)
.+-|+++.++..+
T Consensus 212 l~Yh~q~~e~L~~ 224 (229)
T cd07594 212 MTYYAQCYQYMDD 224 (229)
T ss_pred HHHHHHHHHHHHH
No 132
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=40.66 E-value=2.9e+02 Score=27.69 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002497 817 IISIQSQESVALSMVKEI 834 (915)
Q Consensus 817 i~~Lq~~~~~~~~~~kel 834 (915)
|+.|...+.++...+.++
T Consensus 89 v~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555554444443
No 133
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=40.57 E-value=9.7 Score=38.61 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
+++||++.++-|+|+.+|-.+|+|.
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwk 34 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWK 34 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEee
Confidence 5666666666566344333444444
No 134
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.25 E-value=4.3e+02 Score=28.92 Aligned_cols=73 Identities=12% Similarity=0.206 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002497 762 AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE 840 (915)
.+..++.+..++..|...+..+++....... ..+.+......-+..|+.-...++.....+.....++. +||+
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~-----~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~-~l~~ 115 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSR-----KAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE-SLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCc
Confidence 4455666777777777777766655543321 12344444455555555544444444444444444444 4454
No 135
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.92 E-value=5.3e+02 Score=30.79 Aligned_cols=30 Identities=30% Similarity=0.285 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCcCCC
Q 002497 884 PMPTNPALPPAFPGFNGRQHYCSSDDESSS 913 (915)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (915)
.+--|.-+|.+...+.++.-+.|+-+-+|+
T Consensus 430 ~iv~nngl~~l~~sl~s~h~~~ssm~~ss~ 459 (575)
T KOG4403|consen 430 QIVNNNGLPSLNRSLYSDHFYNSSMGMSSS 459 (575)
T ss_pred eeecCCCchHHHHHHhcccccccccccCCC
Confidence 555566677666666666655555444443
No 136
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.79 E-value=4.9e+02 Score=27.70 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 626 ANFDSEVEYLKRSFETLQVACGELRKS 652 (915)
Q Consensus 626 ~~F~~~~~~l~~~l~~l~~AceeLr~S 652 (915)
..-+.++++++..|..|.+.|..+.++
T Consensus 5 ~~~E~~~~~l~~~l~kl~K~~~~~~~a 31 (200)
T cd07603 5 EQVEADVSELETRLEKLLKLCNGMVDS 31 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999888774
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.76 E-value=1e+03 Score=31.27 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=14.1
Q ss_pred hchhhhhhhHHHhhcCCHHHHH
Q 002497 749 SSLSGELTNVRKAAAMDSDVLS 770 (915)
Q Consensus 749 ~~ls~EL~~V~kAAkvdle~L~ 770 (915)
.+=..|+..++++++|..++++
T Consensus 958 e~re~eikeLkk~aKmkqeelS 979 (1243)
T KOG0971|consen 958 EDRETEIKELKKSAKMKQEELS 979 (1243)
T ss_pred HhhHHHHHHHHHHHHhhHHHHH
Confidence 3345567777887777666543
No 138
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.09 E-value=1.5e+02 Score=27.04 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
+.+...+..-++.....+..+......+...++++...|.+...... ..+.|.... ....+..+.+++..+++|
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~--~~~~~~~~~-y~~KL~~ikkrm~~l~~~ 79 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ--INEPFDLDP-YVKKLVNIKKRMSNLHER 79 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 44667777778888888888888888888888888777764332111 122333333 445555555554444333
No 139
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=39.06 E-value=5.3e+02 Score=27.84 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 626 ANFDSEVEYLKRSFETLQVACGELRK 651 (915)
Q Consensus 626 ~~F~~~~~~l~~~l~~l~~AceeLr~ 651 (915)
...+.+++++...|..|.+-|..+.+
T Consensus 5 ~~~E~ele~l~~~ikkLiK~ck~~i~ 30 (207)
T cd07602 5 HEHEAELERTNKAIKELIKECKNLIS 30 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999888888766
No 140
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=38.99 E-value=5.6e+02 Score=28.09 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHH
Q 002497 812 KAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLS 861 (915)
Q Consensus 812 ~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~ 861 (915)
.++.++..+++.+.+..+....++.=+-+.. -++-..|.+|+.
T Consensus 167 ~~e~elr~ae~efees~E~a~~~m~~i~~~~-------~e~~~~L~~lv~ 209 (229)
T cd07616 167 AAEQELRITQSEFDRQAEITRLLLEGISSTH-------AHHLRCLNDFVE 209 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------hHHHHHHHHHHH
Confidence 3577888888888888887777776665321 134455666665
No 141
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=38.91 E-value=56 Score=39.52 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHH
Q 002497 636 KRSFETLQVACGELRKSRMFLK 657 (915)
Q Consensus 636 ~~~l~~l~~AceeLr~S~~L~~ 657 (915)
..+|++|..|++.|.....-+.
T Consensus 296 LAKLHCvRqAf~~~l~d~~~r~ 317 (514)
T PF10265_consen 296 LAKLHCVRQAFQVLLQDESNRV 317 (514)
T ss_pred HHHHHHHHHHHHHHhcCchhhh
Confidence 3667777777777766654443
No 142
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=38.81 E-value=4.6e+02 Score=27.99 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccCC
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVA---LSMVKEITEYFHGN 841 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~---~~~~kel~~YFGEd 841 (915)
.+|..=+..+..+|..|+...+++ +-..|+||.|..|.
T Consensus 104 ~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDee 144 (195)
T PF10226_consen 104 SVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEE 144 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 456666666666666665444433 22346666666543
No 143
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.62 E-value=2.8e+02 Score=26.88 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCC
Q 002497 767 DVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQ-SQESVALSMVKEITEYFHGNS 842 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq-~~~~~~~~~~kel~~YFGEd~ 842 (915)
++|.+|++.|...++. +|+..... ..+..++.......-+++++.++.... ......+...+..=+|-+|+|
T Consensus 11 ~~l~~el~~L~d~lEe---vL~ssg~~-a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEE---VLKSSGSL-AGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 5666666666655544 34432211 223356778888888888888888884 444455566666668988876
No 144
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=38.52 E-value=5.7e+02 Score=28.05 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
|++. .+..=+++++.++...+..++++-+.+++=+..|.++.. .+|=..|.+|+...-.+.+|+-+.+|.
T Consensus 159 dK~~-~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~------~Dfk~~v~~fles~ie~qke~ie~We~ 228 (234)
T cd07665 159 DKLQ-QAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKS------KDFKNHIIKYLETLLHSQQQLVKYWEA 228 (234)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 344555667777777777777777777766777754322 345556888999988888888777764
No 145
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.45 E-value=7.2e+02 Score=31.44 Aligned_cols=52 Identities=8% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHH
Q 002497 815 QEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEV 870 (915)
Q Consensus 815 ~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~ 870 (915)
.+|-.|+..++.+...|..++.+|||..- +. .++=..|.|.-.+|+....|+
T Consensus 904 ~~~p~~~~~ledL~qRy~a~LqmyGEk~E--e~--EELrlDl~dlK~mYk~QIdeL 955 (961)
T KOG4673|consen 904 DRVPGIKAELEDLRQRYAAALQMYGEKDE--EL--EELRLDLVDLKEMYKEQIDEL 955 (961)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcchHH--HH--HHHHhhHHHHHHHHHHHHHHH
Confidence 34566788888888899999999998532 22 344445667777776555554
No 146
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=38.13 E-value=2.9e+02 Score=30.73 Aligned_cols=88 Identities=10% Similarity=0.186 Sum_probs=37.2
Q ss_pred hchhhhhhhHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhh-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 002497 749 SSLSGELTNVRKAAA-MDSDVLSSEVAKLAAGITKIMEVVKLNEEIAM---KES-SRKFSHSMNEFLKKAEQEIISIQSQ 823 (915)
Q Consensus 749 ~~ls~EL~~V~kAAk-vdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~---~e~-~d~F~~~M~~Fl~~Ae~ei~~Lq~~ 823 (915)
..+..++..+++.-. -.......++..+++.+..++..+......-. ... .....+..+.+++++..++.++.+.
T Consensus 152 ~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~ 231 (318)
T TIGR00383 152 ENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHILSLLEM 231 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544321 11223334566666666666655543322100 000 0112233444455555555555554
Q ss_pred HHHHHHHHHHHHh
Q 002497 824 ESVALSMVKEITE 836 (915)
Q Consensus 824 ~~~~~~~~kel~~ 836 (915)
.+...+....+++
T Consensus 232 ~~~~~e~l~~l~d 244 (318)
T TIGR00383 232 IETYRELLSSLMD 244 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 147
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.04 E-value=4.8e+02 Score=31.36 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=17.8
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 755 LTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 755 L~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
+..+.+....+++.+..++.++......++.++.
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~ 237 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIE 237 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443444555666666666655555555443
No 148
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=37.83 E-value=1.8e+02 Score=31.59 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHhhccCCC
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESV-ALS--MVKEITEYFHGNS 842 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~-~~~--~~kel~~YFGEd~ 842 (915)
...+...+.+|...+...+.+|+..+.+ -.. ...+|+.+||-|.
T Consensus 169 ~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~~TM~eL~~~l~ID~ 215 (221)
T PF10376_consen 169 LEQLQSLIKKWRSASQEALYELQSEMSEEEGEKFTMGELIKRLGIDY 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHhCCCc
Confidence 3467778888888888888888876654 111 3577888888664
No 149
>PRK04654 sec-independent translocase; Provisional
Probab=37.61 E-value=2.6e+02 Score=30.22 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002497 769 LSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 769 L~sdv~kL~~gl~kv~~~l~ 788 (915)
|...++++++.++.+++++.
T Consensus 32 lGk~irk~R~~~~~vk~El~ 51 (214)
T PRK04654 32 AGLWVRRARMQWDSVKQELE 51 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554
No 150
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.55 E-value=49 Score=29.67 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRS 155 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~ 155 (915)
+++||.+.++|++ +-.+.++|+-||-
T Consensus 3 l~lail~ivl~ll-~G~~~G~fiark~ 28 (71)
T COG3763 3 LWLAILLIVLALL-AGLIGGFFIARKQ 28 (71)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4667766666666 4445677776643
No 151
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=37.52 E-value=3.8e+02 Score=30.65 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002497 638 SFETLQVACGEL 649 (915)
Q Consensus 638 ~l~~l~~AceeL 649 (915)
.+..|.++|.+.
T Consensus 41 ~v~~i~~~ttey 52 (366)
T KOG1118|consen 41 GVTKILAKTTEY 52 (366)
T ss_pred HHHHHHHhhHHh
Confidence 334444444433
No 152
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=37.48 E-value=4e+02 Score=25.99 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccC
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQS----QESVALSMVKEITEYFHG 840 (915)
Q Consensus 765 dle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~----~~~~~~~~~kel~~YFGE 840 (915)
+.+.+..++++|-.....|-.....-... ..+..-.|.+.|..-+++-+.-+.+|+- ..+.+.+..+..+..||-
T Consensus 6 ~SeiVq~e~~~if~~yq~l~~~~~~~~~f-d~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~ 84 (108)
T PF08855_consen 6 DSEIVQDELQDIFEDYQELMQMGSKYGKF-DREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGY 84 (108)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCC
Confidence 34566666666666665554332111000 1123345677777777777766666653 244566778888999996
Q ss_pred CC
Q 002497 841 NS 842 (915)
Q Consensus 841 d~ 842 (915)
.+
T Consensus 85 ~~ 86 (108)
T PF08855_consen 85 TP 86 (108)
T ss_pred Cc
Confidence 55
No 153
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.28 E-value=4.2e+02 Score=33.39 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=29.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 797 ESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEI 834 (915)
Q Consensus 797 e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel 834 (915)
+.-+++...+..|-+...++++.++.....+.+++..+
T Consensus 226 etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 226 ETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888887777544
No 154
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.15 E-value=3.4e+02 Score=30.84 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=30.8
Q ss_pred hhhchhhhhhhHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 002497 747 VVSSLSGELTNVRKAAAM--DSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKA 813 (915)
Q Consensus 747 ~V~~ls~EL~~V~kAAkv--dle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~A 813 (915)
-+..|...|..+++|-.. .+..|..++.++......+...++.-. +..+.+++.|...++.|
T Consensus 139 ~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la-----~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 139 KIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELA-----NEAQEYHEEMIKLFEEA 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 355566666666655332 344444555555554444444332211 12356666666665554
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=37.07 E-value=2.1e+02 Score=31.70 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCCcc-ccCchhhHHHHHHHHHHHHHHHHHHH----H
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHG--NSAKE-EAHPFRIFLVVKEFLSTLDQVCKEVG----R 872 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE--d~~k~-e~~p~~fF~~l~dFl~~~dka~kE~~----r 872 (915)
++|-..-..|+++ +..|++++......-..+-+|.-| ...++ +.-...--..+.||-..+++|.+.+. +
T Consensus 80 ek~e~q~~q~y~q----~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESE 155 (333)
T KOG1853|consen 80 EKQEDQRVQFYQQ----ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESE 155 (333)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544 455666666665555556666553 11111 11111223457899999999988764 3
Q ss_pred hhhhhc
Q 002497 873 INERTI 878 (915)
Q Consensus 873 ~~er~~ 878 (915)
+.||++
T Consensus 156 LdEke~ 161 (333)
T KOG1853|consen 156 LDEKEV 161 (333)
T ss_pred hhHHHH
Confidence 456653
No 156
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.06 E-value=2.5e+02 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=28.3
Q ss_pred hhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 756 TNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLN 790 (915)
Q Consensus 756 ~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~ 790 (915)
..+.+-..++..++...+..|+..|++++..++..
T Consensus 13 ~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~l 47 (83)
T PF07544_consen 13 HQISKDPPLSSKDLDTATGSLKHKLQKARAAIREL 47 (83)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444367889999999999999999999988754
No 157
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=36.94 E-value=39 Score=24.72 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcc
Q 002497 143 LIAAAAVFIYFRSK 156 (915)
Q Consensus 143 ~~~~~~~~~~rr~~ 156 (915)
.+++++++.+|||.
T Consensus 12 ~~~l~~l~~~rRr~ 25 (26)
T TIGR03778 12 GLGLLGLLGLRRRX 25 (26)
T ss_pred HHHHHHHHHHhhcc
Confidence 55677778888764
No 158
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=36.74 E-value=2.7e+02 Score=28.55 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002497 856 VKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 856 l~dFl~~~dka~kE~~r~ 873 (915)
+.+..-.||.++.++.++
T Consensus 140 r~~~~ldyd~~~~k~~k~ 157 (229)
T PF03114_consen 140 REKKRLDYDSARSKLEKL 157 (229)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 159
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=36.72 E-value=4.3e+02 Score=32.47 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=82.4
Q ss_pred cccccChhhhhHHHHHHhhc------CCCHHHHHHHHhcCC-CCCCCHHHHHHHHhhCCChHHHHHHHhhcccCCCCCCh
Q 002497 529 ENRVLDPKKSQNIAILLRAL------NVTVDEVCEGLLEGN-SDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGP 601 (915)
Q Consensus 529 eisvLD~KRaqNI~I~L~kl------k~s~eeI~~AIl~~D-~~~L~~e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~ 601 (915)
+.+|+|.--..-++ +-+.+ .++.+|.+..|+.|+ .+.+..+++.+|+++.-.. ....+ |-| - -
T Consensus 440 ~~qI~D~T~~Nlv~-frr~IYLti~SSldfeEaaHKLLKmkip~~q~~elc~mii~cc~Qe--rTy~k-FYg----l--L 509 (739)
T KOG2140|consen 440 KLQIIDMTETNLVN-FRRTIYLTIQSSLDFEEAAHKLLKMKIPESQEKELCNMIIDCCAQE--RTYEK-FYG----L--L 509 (739)
T ss_pred cceeeccccchhHH-hhhhheeeeeccCcHHHHHHHHHhccCCchhhHHHHHHHHHHhhhH--HHHHH-HHH----H--H
Confidence 46788865554333 22222 478899999999988 4566778888888776322 22112 212 1 1
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeee
Q 002497 602 AEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAF 681 (915)
Q Consensus 602 aEqFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GF 681 (915)
.|+|+..- ..+...|+..+.+-...|+.++. +.||+ +.++++.+|. -+|.++
T Consensus 510 ~eRfc~l~------------r~~q~~fe~~f~q~YstIhr~Et--nkLRn---lakffahLls-----------td~lpw 561 (739)
T KOG2140|consen 510 GERFCMLH------------REWQEAFEKCFKQQYSTIHRYET--NKLRN---LAKFFAHLLS-----------TDALPW 561 (739)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhH--HHHHH---HHHHHHHHhc-----------ccccch
Confidence 25554321 12233444444333333444432 44443 3333333333 257888
Q ss_pred eccccccccccccCCCCccHHHHHHHHHHHHh
Q 002497 682 KLDTLLKLVDVKGADGKTTLLHFVVQEIIRAE 713 (915)
Q Consensus 682 kLsSL~KL~dvKs~D~k~TLLhyVVq~Iir~e 713 (915)
.+=...||.+--++....=++.|+-|+|++.-
T Consensus 562 ~vl~~ikLTEEdTtsssRIfiKilFqELve~l 593 (739)
T KOG2140|consen 562 DVLACIKLTEEDTTSSSRIFIKILFQELVEAL 593 (739)
T ss_pred HHHHHhhcccccCCccceehHHHHHHHHHHHh
Confidence 87666677766666666679999999988753
No 160
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=36.56 E-value=62 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=11.6
Q ss_pred HHHHHHHH-hccCCCCCC
Q 002497 146 AAAVFIYF-RSKHRSSPD 162 (915)
Q Consensus 146 ~~~~~~~r-r~~~~~~~~ 162 (915)
++++|+|- |..|.-+.+
T Consensus 17 ~l~~f~Wavk~GQfdD~e 34 (45)
T PF03597_consen 17 ALAAFLWAVKSGQFDDLE 34 (45)
T ss_pred HHHHHHHHHccCCCCCCc
Confidence 45566666 888877763
No 161
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=36.54 E-value=7.2e+02 Score=29.05 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc-------ccCchhhHHHHHHHHHHHHHHHHH
Q 002497 808 EFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKE-------EAHPFRIFLVVKEFLSTLDQVCKE 869 (915)
Q Consensus 808 ~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~-------e~~p~~fF~~l~dFl~~~dka~kE 869 (915)
++.+.|+.++..|..+++++...++.++..-++..... .+-+.+---.+.+++++|.+-|..
T Consensus 75 e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~ 143 (360)
T TIGR00019 75 EMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAES 143 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888998888887766665554333322210 111223333467788888877764
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.50 E-value=6.9e+02 Score=31.84 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-ccccCchhhHHHHHHHHHHH
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSA-KEEAHPFRIFLVVKEFLSTL 863 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~-k~e~~p~~fF~~l~dFl~~~ 863 (915)
.++..++++.+.+..+.+.+.+++++.-.+.... -.+++ .+|+..|..+-..+
T Consensus 595 ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 595 AEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3334456666676667677777777766654211 11222 45665554444333
No 163
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.49 E-value=9.2e+02 Score=29.87 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=19.1
Q ss_pred hhhhhHHHhhcCCHHHH---HHHHHHHHHHHHHHHHHHH
Q 002497 753 GELTNVRKAAAMDSDVL---SSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 753 ~EL~~V~kAAkvdle~L---~sdv~kL~~gl~kv~~~l~ 788 (915)
++|...-.-++++.+++ ..|-.+|.+.|.+++.+++
T Consensus 318 d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 318 DELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444456654443 4455566666666655443
No 164
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=36.49 E-value=5.8e+02 Score=27.73 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 813 AEQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 813 Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
.+++++..++.+.++.+.+...|.=|-++
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~~ 183 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLEN 183 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47888888988888888888777766553
No 165
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.48 E-value=3.1e+02 Score=31.12 Aligned_cols=43 Identities=2% Similarity=0.050 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCC
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITE--YFHGN 841 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~--YFGEd 841 (915)
.......|..-+.....+-..++..++.+.+...+.-. ..|.+
T Consensus 73 ~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~ 117 (297)
T KOG0810|consen 73 DKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAG 117 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc
Confidence 34455556665555555556666666666555444332 44443
No 166
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=36.15 E-value=51 Score=36.44 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCC
Q 002497 249 NPLPPLLKQNSSF 261 (915)
Q Consensus 249 ~plppl~~~~~~~ 261 (915)
-||=|-+|.+|..
T Consensus 25 LPL~pcpR~~Fql 37 (253)
T PF05308_consen 25 LPLKPCPRPHFQL 37 (253)
T ss_pred CCCCCCCCceeec
Confidence 3555556655543
No 167
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=35.97 E-value=38 Score=24.33 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.2
Q ss_pred HHHHHHHhcc
Q 002497 147 AAVFIYFRSK 156 (915)
Q Consensus 147 ~~~~~~rr~~ 156 (915)
+++.++||||
T Consensus 16 ~~l~~~rrRr 25 (25)
T PF07589_consen 16 LGLAFARRRR 25 (25)
T ss_pred HHHHHHhccC
Confidence 3333345443
No 168
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=35.90 E-value=1e+03 Score=30.90 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=50.7
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHHHHhhc---------ccCCCCCCh---H-H
Q 002497 537 KSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFK---------DESPFKLGP---A-E 603 (915)
Q Consensus 537 RaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~Lke~~---------~d~ps~L~~---a-E 603 (915)
-.+.+.-.|+++. +.+.++..|..+....-+.-.+..-+..+|+-..+ +.... .+. ..+.. . +
T Consensus 331 l~~~L~~~L~~v~-DleRl~~Rl~~~~~~~rDl~~l~~~l~~~~~i~~~--l~~~~~~~~l~~~~~~i-~~~~~~~e~~~ 406 (843)
T COG0249 331 LREKLREMLKKVP-DLERLLSRLSLGRASPRDLLRLRDSLEKIPEIFKL--LSSLKSESDLLLLLEDI-ESLDYLAELLE 406 (843)
T ss_pred HHHHHHHHHhcCc-CHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHH--HhccccchhhhHHhhhh-hccccHHHHHH
Confidence 3455555666664 67777777776665554444433333333321111 11111 100 01111 1 1
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002497 604 KFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELR 650 (915)
Q Consensus 604 qFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr 650 (915)
.+-..+...+-+..|- .+.+..|+.++++++...+...+-..++.
T Consensus 407 ll~~~i~~~~~~~~~~--~ii~~g~~~eLd~lr~~~~~~~~~i~~le 451 (843)
T COG0249 407 LLETAINEDPPLAVRD--GIIKEGYNIELDELRDLLNNAKEWIAKLE 451 (843)
T ss_pred HHHHHhhhcchhhcch--hHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223333333333 56677788888887776665554444443
No 169
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.87 E-value=2.1e+02 Score=24.83 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002497 769 LSSEVAKLAAGITKIMEVVKL 789 (915)
Q Consensus 769 L~sdv~kL~~gl~kv~~~l~~ 789 (915)
+..++.+|.+.+.+++..+..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777776666644
No 170
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.39 E-value=1.2e+03 Score=30.74 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=6.8
Q ss_pred cccccccccccC
Q 002497 684 DTLLKLVDVKGA 695 (915)
Q Consensus 684 sSL~KL~dvKs~ 695 (915)
|+|-||.|+-+.
T Consensus 382 dalVrLRDlsA~ 393 (1243)
T KOG0971|consen 382 DALVRLRDLSAS 393 (1243)
T ss_pred HHHHHHHhcchH
Confidence 556666665543
No 171
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=35.38 E-value=6.2e+02 Score=27.60 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 814 EQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 814 e~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
+++++..++.+.++.+.+...|.=|-+.
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~le~ 183 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFLEN 183 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777788888888887777777666554
No 172
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=6.8e+02 Score=31.64 Aligned_cols=60 Identities=30% Similarity=0.388 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCC
Q 002497 637 RSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGAD 696 (915)
Q Consensus 637 ~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D 696 (915)
..+..|..||+.||.+.....+=.-+-.+--+|-..-.|..-.=|.|++|.+-.|.++.|
T Consensus 149 ~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l~e~~dlsgId 208 (797)
T KOG2211|consen 149 MVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSLLEVLDLSGID 208 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHHHHHhhhcchH
Confidence 346788899999999886555544444322222222123333567889999888888865
No 173
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=35.03 E-value=5.9e+02 Score=29.14 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=29.6
Q ss_pred HhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccccCCCCccHHHHHHH
Q 002497 650 RKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQ 707 (915)
Q Consensus 650 r~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVq 707 (915)
+.++.++.|--++-.+|-|+|..-.. .||.=-|=.|-|.+-|.|..+
T Consensus 205 ~g~~~~k~ikpmlsDL~tYlnkaiPD-----------TrLTikkYlDvKfeYLSYCLK 251 (429)
T KOG3651|consen 205 KGSESAKPIKPMLSDLQTYLNKAIPD-----------TRLTIKKYLDVKFEYLSYCLK 251 (429)
T ss_pred hccchhhhhhHHHHHHHHHHhccCCc-----------chhhhHHhhhhhHHHHHHHHh
Confidence 45677777778888999999975321 112222223556788888754
No 174
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=35.00 E-value=4.7e+02 Score=28.71 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHH
Q 002497 816 EIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEV 870 (915)
Q Consensus 816 ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~ 870 (915)
+.+.+-..+..+.+.|.++..-..+ . ..||..|...+..+.+.|++.
T Consensus 242 ~r~~~~~~l~~a~~~y~el~~~l~e------G--~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 242 ERESALQRLEAAYDAYKELSSNLEE------G--LKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH------H--HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666655542 1 357777777777777766664
No 175
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=34.81 E-value=5.4e+02 Score=28.65 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIM 784 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~ 784 (915)
+++|.....+|+...+.+.
T Consensus 54 L~q~etrnrdl~t~nqrl~ 72 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLT 72 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 176
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=34.63 E-value=13 Score=41.20 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh
Q 002497 143 LIAAAAVFIYFR 154 (915)
Q Consensus 143 ~~~~~~~~~~rr 154 (915)
||+..+++||||
T Consensus 239 LLaVGGLLfYr~ 250 (285)
T PF05337_consen 239 LLAVGGLLFYRR 250 (285)
T ss_dssp ------------
T ss_pred hhhccceeeecc
Confidence 444556667763
No 177
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=34.33 E-value=5.3e+02 Score=31.08 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 762 AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
++.+-+.|.-+++++...+..+++..... +......-..+-.|..-+.+-+++|.+||..-.++.++....++..-..
T Consensus 409 sr~eKetLqlelkK~k~nyv~LQEry~~e--iQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrE 486 (527)
T PF15066_consen 409 SRNEKETLQLELKKIKANYVHLQERYMTE--IQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKRE 486 (527)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHH--HHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888777644321 1111112334567888999999999999988888888777777766532
Q ss_pred CCccccCchhhHHHHHHHHH
Q 002497 842 SAKEEAHPFRIFLVVKEFLS 861 (915)
Q Consensus 842 ~~k~e~~p~~fF~~l~dFl~ 861 (915)
. +..-.+|...=.+|-+
T Consensus 487 K---e~~EqefLslqeEfQk 503 (527)
T PF15066_consen 487 K---ETREQEFLSLQEEFQK 503 (527)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 2 1222445444344444
No 178
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=33.90 E-value=1.6e+02 Score=36.05 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002497 803 SHSMNEFLKKAEQEIISIQSQESVALSMVKEITEY 837 (915)
Q Consensus 803 ~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~Y 837 (915)
.+.++.-+.+++.++.+|+...+.++..++++++-
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 45677788888899999999999999999999873
No 179
>PRK15396 murein lipoprotein; Provisional
Probab=33.80 E-value=1.9e+02 Score=26.61 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 765 dle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
++++|.++|..|...+..+...++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~ 49 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVN 49 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888777776665543
No 180
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=33.64 E-value=6.4e+02 Score=27.24 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEIT 835 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~ 835 (915)
+.+|++++...+..+..+++..++-+
T Consensus 146 L~kae~el~~a~~~Ye~lN~~Lk~EL 171 (224)
T cd07591 146 LPRAEKELDEAKEVYETLNDQLKTEL 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777777777766655433
No 181
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=33.59 E-value=9.9e+02 Score=29.39 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 625 IANFDSEVEYLKRSFETLQVACGELRKS 652 (915)
Q Consensus 625 ~~~F~~~~~~l~~~l~~l~~AceeLr~S 652 (915)
....+..++.+...+..+..+.++|.++
T Consensus 103 i~~~~~~l~~~e~~i~~i~~~l~~L~~~ 130 (560)
T PF06160_consen 103 IKEIEEQLDEIEEDIKEILDELDELLES 130 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777665
No 182
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.50 E-value=3.7e+02 Score=34.27 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=32.6
Q ss_pred hhHHHHHhcchhhhchhhhhhhHHHhhcC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 736 DDVEFRKLGLQVVSSLSGELTNVRKAAAM------DSDVLSSEVAKLAAGITKIMEVVKLNE 791 (915)
Q Consensus 736 ed~e~~klglq~V~~ls~EL~~V~kAAkv------dle~L~sdv~kL~~gl~kv~~~l~~~~ 791 (915)
||-|+.+| +..|+....-|..|.....| -++-|++|...|++.|+-+...|+..+
T Consensus 354 ~DsE~qRL-itEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnqqlreqe 414 (861)
T PF15254_consen 354 EDSEVQRL-ITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQQLREQE 414 (861)
T ss_pred chHHHHHH-HHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45455444 22334444444444433332 356788899999999988887776544
No 183
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.17 E-value=4.6e+02 Score=32.68 Aligned_cols=45 Identities=31% Similarity=0.445 Sum_probs=25.8
Q ss_pred hcchhhhchhhhhhhHHH--hhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 002497 743 LGLQVVSSLSGELTNVRK--AAAMDSDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 743 lglq~V~~ls~EL~~V~k--AAkvdle~L~sdv~kL~~gl~kv~~~l 787 (915)
+||..+..|..||..+.+ ...+....+..++.+|++.++.++..+
T Consensus 179 lGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~ 225 (650)
T TIGR03185 179 LGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKY 225 (650)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777653 233444555555666665555544433
No 184
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.94 E-value=1.7e+02 Score=31.94 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=47.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Q 002497 762 AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEI-AMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVK--EITEYF 838 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~-~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k--el~~YF 838 (915)
..++.+++..++.+++..|+.++...+.-.+. .....-+. .-.+..=|.+.+.+|+.++.++..+.+.+. .+..+|
T Consensus 123 ~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d-~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 123 RNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVED-LLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred eeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 46778888899999999888887655433221 11111111 224556667777777777777766655433 333455
Q ss_pred cCC
Q 002497 839 HGN 841 (915)
Q Consensus 839 GEd 841 (915)
-+.
T Consensus 202 ~~~ 204 (262)
T PF14257_consen 202 YEP 204 (262)
T ss_pred Eec
Confidence 554
No 185
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=32.91 E-value=3.5e+02 Score=23.89 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002497 767 DVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQES 825 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~ 825 (915)
++=...+.+++..|..+++.|+..+... ..........|..=++.++.++..|+.+++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~-~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEV-RSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666665554332111 111335566777777777777777776654
No 186
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.68 E-value=2.7e+02 Score=33.74 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE 840 (915)
+.|..-+..+...-+.+++.++++++.|.+++..|+|
T Consensus 257 eel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 257 EELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566677777777777777777775
No 187
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=32.56 E-value=5.6e+02 Score=27.53 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
+-.++.++..+++.+...++.++..-. ......+.+..+..+++...++..+.+..+.+.+....+...+
T Consensus 153 l~~l~~~l~~l~~~l~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (292)
T PF01544_consen 153 LFDLRRELSRLRRSLSPLREVLQRLLR---RDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLY 222 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555521111 0111222223334455555555555555555544444444433
No 188
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=32.56 E-value=1.3e+02 Score=30.62 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=49.6
Q ss_pred HHHHHHHhhCCChHHHHHHHhhcccCCCCCChHHHHHHHHhC----cccHHHHHHHH--HHHHHhHHHHHHHHHHHHHHH
Q 002497 570 ELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLE----IPFAFKRVDAM--LYIANFDSEVEYLKRSFETLQ 643 (915)
Q Consensus 570 e~Le~Llk~lPt~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~----IP~~~~RL~al--lf~~~F~~~~~~l~~~l~~l~ 643 (915)
....+|..+.|+-+|++.+....+... =..-|+|...|-+ |..+. ++..| +-+..|...++++...|..+.
T Consensus 38 ~L~sTl~~i~P~i~eI~~~~~eld~~~--~ee~e~L~~~L~~g~~LV~k~s-k~~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 38 RLESTLESIIPIIKEIDKLNVELDRPR--QEEIERLKELLEKGKELVEKCS-KVRRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhcCCch--hHHHHHHHHHHHHHHHHHHHhc-cccHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 445677788999999998876655320 1122334333321 11111 22222 235567788888888888777
Q ss_pred HHHHHHHhchhHHHHHHHH
Q 002497 644 VACGELRKSRMFLKLLEAV 662 (915)
Q Consensus 644 ~AceeLr~S~~L~~lL~lV 662 (915)
..--++...+.++.++..+
T Consensus 115 ~v~~q~~~~~D~~~l~~~~ 133 (147)
T PF05659_consen 115 QVDLQLHQLRDIKELLAKM 133 (147)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 7655554444455544433
No 189
>PF15050 SCIMP: SCIMP protein
Probab=32.53 E-value=74 Score=31.38 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 002497 127 HVIILAISLSFLSAA 141 (915)
Q Consensus 127 ~~~~~ai~~~~~~~~ 141 (915)
+.|++||.++++++.
T Consensus 8 FWiiLAVaII~vS~~ 22 (133)
T PF15050_consen 8 FWIILAVAIILVSVV 22 (133)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345555555555544
No 190
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=32.29 E-value=1.7e+02 Score=34.41 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSM 830 (915)
Q Consensus 765 dle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~ 830 (915)
.+-.+..+|..+++.+.+|++.|+.+. .+......|+.=++.+..+|..|++++..+.+.
T Consensus 414 ~lv~~edeirrlkrdm~klkq~l~RN~------gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 414 ALVEYEDEIRRLKRDMLKLKQMLNRNK------GDLVVSEALQERLKEVRKALASLLAQEAALSNE 473 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344567789999999999999998764 234567788889999999999999888766544
No 191
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=31.87 E-value=43 Score=39.60 Aligned_cols=61 Identities=23% Similarity=0.196 Sum_probs=42.3
Q ss_pred HHHHHhchhHHHHHHHHHHhccccccCCCCCceeeee---cccccccccc----ccCCCCccHHHHHHHHHHHH
Q 002497 646 CGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFK---LDTLLKLVDV----KGADGKTTLLHFVVQEIIRA 712 (915)
Q Consensus 646 ceeLr~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFk---LsSL~KL~dv----Ks~D~k~TLLhyVVq~Iir~ 712 (915)
.+.+-.|..-.-++..+|+||||.-. ++.... =+.+.||.++ |+.||..++-|-... ..|+
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls-ALRn 387 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS-ALRN 387 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH-HHHh
Confidence 45556677777888899999999754 333322 2557777775 677888898888764 4454
No 192
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.74 E-value=1.2e+03 Score=31.53 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=8.9
Q ss_pred cHHHHHHHHHHHHh
Q 002497 700 TLLHFVVQEIIRAE 713 (915)
Q Consensus 700 TLLhyVVq~Iir~e 713 (915)
+++.|+.+.|...|
T Consensus 834 ~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 834 ELIEYLESQIAELE 847 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 47777776665544
No 193
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=31.44 E-value=95 Score=26.25 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=11.3
Q ss_pred HHHHHHHH-hccCCCCCC
Q 002497 146 AAAVFIYF-RSKHRSSPD 162 (915)
Q Consensus 146 ~~~~~~~r-r~~~~~~~~ 162 (915)
++++|+|- |..|.-+..
T Consensus 18 ~l~~f~Wavk~GQfDDle 35 (51)
T TIGR00847 18 GLVAFLWSLKSGQYDDLK 35 (51)
T ss_pred HHHHHHHHHccCCCCCCc
Confidence 45566666 888877753
No 194
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.15 E-value=75 Score=26.03 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.2
Q ss_pred HHHHHHHHhc
Q 002497 146 AAAVFIYFRS 155 (915)
Q Consensus 146 ~~~~~~~rr~ 155 (915)
++++|.||++
T Consensus 24 gi~~w~~~~~ 33 (49)
T PF05545_consen 24 GIVIWAYRPR 33 (49)
T ss_pred HHHHHHHccc
Confidence 4555555533
No 195
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=31.14 E-value=4.1e+02 Score=28.73 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcc
Q 002497 819 SIQSQESVALSMVKEITEYFHGNSAKE 845 (915)
Q Consensus 819 ~Lq~~~~~~~~~~kel~~YFGEd~~k~ 845 (915)
.|..-+..+-+.|.+|.++|+|.++++
T Consensus 74 ~L~~Ai~~tg~~y~~IG~~faeQpk~D 100 (210)
T cd07668 74 DLNDAITEAGKTYEEIASLVAEQPKKD 100 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 477777788899999999999998875
No 196
>PHA03286 envelope glycoprotein E; Provisional
Probab=31.03 E-value=51 Score=38.99 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=10.9
Q ss_pred HHHHHHHHHHH-hccCCCCC
Q 002497 143 LIAAAAVFIYF-RSKHRSSP 161 (915)
Q Consensus 143 ~~~~~~~~~~r-r~~~~~~~ 161 (915)
+.++.+.-+|| ||+||+..
T Consensus 406 ~~~~~~~~~~~r~~~~r~~~ 425 (492)
T PHA03286 406 LFALCIAGLYRRRRRHRTNG 425 (492)
T ss_pred HHHHHhHhHhhhhhhhhccc
Confidence 44444445555 66777765
No 197
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.98 E-value=4.3e+02 Score=32.48 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 002497 622 MLYIANFDSEVEYLKRSFETL 642 (915)
Q Consensus 622 llf~~~F~~~~~~l~~~l~~l 642 (915)
++++..+...+++|..+...|
T Consensus 21 ~~~rr~~~~~i~~Le~~k~~l 41 (569)
T PRK04778 21 LILRKRNYKRIDELEERKQEL 41 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666665554443
No 198
>PF14968 CCDC84: Coiled coil protein 84
Probab=30.94 E-value=69 Score=36.81 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=65.0
Q ss_pred ccChhhhhHHHHHHhhcCCCHHHHHHHHhcCCC-------------CCCCHHHH--------HHHHhhCCChHHHHHHHh
Q 002497 532 VLDPKKSQNIAILLRALNVTVDEVCEGLLEGNS-------------DTLGAELL--------ESLLKMAPTKEEERKIKE 590 (915)
Q Consensus 532 vLD~KRaqNI~I~L~klk~s~eeI~~AIl~~D~-------------~~L~~e~L--------e~Llk~lPt~EE~~~Lke 590 (915)
+...+--+++..+|.+|..-+.+++.+|..--. -.++.|+. ..++..+-+.|=+.++++
T Consensus 16 ~Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~ 95 (336)
T PF14968_consen 16 VYSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKK 95 (336)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHH
Confidence 455666778999999997778999888875211 12344444 357888889999999988
Q ss_pred hcccCCCCCChHHHHHHHHhCcccHHHHHHHHH
Q 002497 591 FKDESPFKLGPAEKFLRAVLEIPFAFKRVDAML 623 (915)
Q Consensus 591 ~~~d~ps~L~~aEqFl~~l~~IP~~~~RL~all 623 (915)
|--+.-...+..|+|++.--++-.+++++...+
T Consensus 96 F~w~~g~~~d~~d~f~Is~~d~~r~kk~~~~~l 128 (336)
T PF14968_consen 96 FWWKNGADMDLKDKFRISEEDYARFKKKCEKAL 128 (336)
T ss_pred HHHHcCCCcccccceeecHHHHHHHHHHHHHHH
Confidence 732222355677888887777788888877665
No 199
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=30.83 E-value=5e+02 Score=28.26 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------CccccCchhhHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNS-------AKEEAHPFRIFLVVKEFLSTLDQVCK 868 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~-------~k~e~~p~~fF~~l~dFl~~~dka~k 868 (915)
.|.|.+..+.|+...+..|..+......|...-++++.-||.-. ..+.+...++|..|.++...+++...
T Consensus 21 ~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~~ 97 (218)
T cd07663 21 VDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVED 97 (218)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888877777777666411 11112234566666666665555443
No 200
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.77 E-value=1.3e+03 Score=30.07 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccc
Q 002497 601 PAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNR 668 (915)
Q Consensus 601 ~aEqFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~ 668 (915)
+-|.|+..|..+..+.+++. +--+++.+|+++|..|.+-| .+.-.++|++.+..-|+
T Consensus 266 ~SdsFfha~~~~~~Lq~~~~------d~~~~vk~Lre~i~~vd~~~-----~~~s~~Ile~~~~r~n~ 322 (951)
T KOG2115|consen 266 RSDSFFHAMTSLHNLQKELR------DTMSEVKELRENIKEVDAEN-----VRKSIKILELALTRKNV 322 (951)
T ss_pred hhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHH
Confidence 34789999888887777553 22355666666666666543 23345677777775553
No 201
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=30.59 E-value=3.6e+02 Score=26.56 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEI 834 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel 834 (915)
.+.+.....++...+..+...+..+-.....+..++..+.++.|.++.+.+++.|+.+.+.+.+...+.
T Consensus 41 ~~~~~~~ae~~~~~~~~~a~~~s~~~a~~~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~sd~ 109 (115)
T COG4980 41 GDALFELAEDKGTDILMIADKLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDE 109 (115)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443322211112334567888888888888888888888777776665544
No 202
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=30.43 E-value=37 Score=41.75 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002497 124 AHRHVIILAISLSFLSAAVLIAAAAVFIYFRSKH 157 (915)
Q Consensus 124 ~~~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~ 157 (915)
....+|++||.++|+.|+++++|+.+-|+|+-|.
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~ 299 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKL 299 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence 3555577888888877774444444444444443
No 203
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.39 E-value=6.1e+02 Score=27.36 Aligned_cols=16 Identities=6% Similarity=-0.226 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhcc
Q 002497 824 ESVALSMVKEITEYFH 839 (915)
Q Consensus 824 ~~~~~~~~kel~~YFG 839 (915)
++-+.+.|.++++-||
T Consensus 99 vemi~k~~~~~L~k~G 114 (208)
T PRK14155 99 VEMTEKELLGAFERNG 114 (208)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3333444444444444
No 204
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.32 E-value=5.5e+02 Score=28.65 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002497 629 DSEVEYLKRSFETLQVACGEL 649 (915)
Q Consensus 629 ~~~~~~l~~~l~~l~~AceeL 649 (915)
++++.+|+..++.+..+|..|
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i 34 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLI 34 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777665
No 205
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.16 E-value=1.7e+02 Score=33.36 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHH-HHHHHHHH
Q 002497 825 SVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLD-QVCKEVGR 872 (915)
Q Consensus 825 ~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~d-ka~kE~~r 872 (915)
++++..++++++||--++.+ .+|..|-..++..++..+ +..+++++
T Consensus 72 ~e~es~l~r~~effVI~Pv~--idP~gIi~R~~~Ll~~~~dr~~~~v~r 118 (368)
T COG4046 72 DEAESTLERYAEFFVIPPVD--IDPAGIIDRLRHLLEMGEDRFRKLVRR 118 (368)
T ss_pred cchHHHHHHHHhheecCccc--CCccchHHHHHHHHHhhhHHHHHHHHH
Confidence 55566777777777766654 355666666666666654 33444554
No 206
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=30.08 E-value=2.3e+02 Score=26.32 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002497 768 VLSSEVAKLAAGITKIMEVVKLNEEIAM-KESSRKFSHSMNEFLKKAEQEIISIQ 821 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~~l~~~~~~~~-~e~~d~F~~~M~~Fl~~Ae~ei~~Lq 821 (915)
+|...+..++..|..+++.+...+..+. .+-...=...=+.|+...+.+|..|+
T Consensus 43 eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 43 ELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555555556666555554432210 11122223455667777777776654
No 207
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.08 E-value=6e+02 Score=28.99 Aligned_cols=69 Identities=4% Similarity=-0.024 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEI-AMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNS 842 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~-~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~ 842 (915)
.+-+..++.++++.+...+..+...... +.-+.+.. .....+.+..|+.++.++...+.++..||+++.
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~--------~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ--------SSAQLSLISTLEGELIRVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 4566777888888888777766543221 11011110 112334566777777777777788888898753
No 208
>PRK09546 zntB zinc transporter; Reviewed
Probab=29.89 E-value=4.4e+02 Score=29.69 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHH
Q 002497 700 TLLHFVVQEIIR 711 (915)
Q Consensus 700 TLLhyVVq~Iir 711 (915)
.+|+.|+..|+.
T Consensus 142 ~ll~~lld~ivd 153 (324)
T PRK09546 142 GWLVDVCDALTD 153 (324)
T ss_pred HHHHHHHHHHHH
Confidence 477777766654
No 209
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=29.88 E-value=3.6e+02 Score=27.81 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=40.7
Q ss_pred chhhhhhhHHHh---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 750 SLSGELTNVRKA---AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESV 826 (915)
Q Consensus 750 ~ls~EL~~V~kA---Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~ 826 (915)
.+.+||..++.- .+-.+..+.+++..|+..++.+...+... ...|...|....+..+-.++.|.++..+
T Consensus 55 ~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~V--------s~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 55 DIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELV--------SRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 455566544321 11234566677777777777777666443 2445555555555555555555555555
Q ss_pred HHHHH
Q 002497 827 ALSMV 831 (915)
Q Consensus 827 ~~~~~ 831 (915)
.+..|
T Consensus 127 l~~i~ 131 (157)
T COG3352 127 LKMIV 131 (157)
T ss_pred HHHHH
Confidence 44444
No 210
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.80 E-value=1.8e+02 Score=33.76 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=38.6
Q ss_pred CCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 002497 597 FKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAV 662 (915)
Q Consensus 597 s~L~~aEqFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lV 662 (915)
.+-+.-|+|++-=.+|=.+..|| .+|-.+++.|.+-+++|.+-.+.. ++++|. .||.+
T Consensus 59 ~~~s~qeKFl~IR~KlleL~~~l------Q~lS~df~~LqPLF~Ti~eyse~~-~~kkF~-pLEtL 116 (379)
T PF11593_consen 59 NNKSPQEKFLLIRSKLLELYNKL------QELSSDFQKLQPLFDTIPEYSEKY-NSKKFQ-PLETL 116 (379)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhchHHhhhHHHhccc-CCccce-echhh
Confidence 34577899986544443333333 346677888899999999888887 777776 34433
No 211
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=29.74 E-value=18 Score=42.98 Aligned_cols=12 Identities=33% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCC
Q 002497 167 SDGQRLFPPNLP 178 (915)
Q Consensus 167 ~~~~~~~~~~~~ 178 (915)
+..+.+-+.|..
T Consensus 393 ~~~YtsLPtNE~ 404 (439)
T PF02480_consen 393 SPVYTSLPTNEP 404 (439)
T ss_dssp ------------
T ss_pred CCccccCCCCCc
Confidence 344444454444
No 212
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=29.73 E-value=7e+02 Score=26.42 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=3.9
Q ss_pred HHHHHHhhc
Q 002497 830 MVKEITEYF 838 (915)
Q Consensus 830 ~~kel~~YF 838 (915)
-.++++.||
T Consensus 101 P~~~~~~~~ 109 (216)
T cd07599 101 PAKELKKYI 109 (216)
T ss_pred HHHHHHHHH
Confidence 334444444
No 213
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.67 E-value=1.3e+03 Score=31.99 Aligned_cols=37 Identities=5% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Q 002497 630 SEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTG 666 (915)
Q Consensus 630 ~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iG 666 (915)
..++++...|..+....++|+.++.+..+++.++..+
T Consensus 230 ~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~ 266 (1486)
T PRK04863 230 KAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITES 266 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhh
Confidence 3478899999999999999999999999999887643
No 214
>PRK09459 pspG phage shock protein G; Reviewed
Probab=29.66 E-value=1.1e+02 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhccCC
Q 002497 143 LIAAAAVFIYFRSKHR 158 (915)
Q Consensus 143 ~~~~~~~~~~rr~~~~ 158 (915)
+++++++|+||..++.
T Consensus 52 il~~v~vW~~r~~~~~ 67 (76)
T PRK09459 52 LLAVVVVWVIRAIKAP 67 (76)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4567788999965443
No 215
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.50 E-value=76 Score=32.73 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 002497 129 IILAISLSFLSA 140 (915)
Q Consensus 129 ~~~ai~~~~~~~ 140 (915)
|++.|++.|++|
T Consensus 80 iivgvi~~Vi~I 91 (179)
T PF13908_consen 80 IIVGVICGVIAI 91 (179)
T ss_pred eeeehhhHHHHH
Confidence 444444444433
No 216
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=29.49 E-value=57 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002497 126 RHVIILAISLSFLSAAVLIAAAAVFIYFRSKH 157 (915)
Q Consensus 126 ~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~ 157 (915)
..+||-.||++. ||||-+++++|-|.|+|-
T Consensus 114 ~g~IaGIvsav~--valvGAvsSyiaYqkKKl 143 (169)
T PF12301_consen 114 AGTIAGIVSAVV--VALVGAVSSYIAYQKKKL 143 (169)
T ss_pred cchhhhHHHHHH--HHHHHHHHHHHHHHhhcc
Confidence 333444344443 443566778888876665
No 217
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=29.41 E-value=1.1e+03 Score=28.68 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhH-------HHHHHHHHHHHHHHHHH
Q 002497 813 AEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIF-------LVVKEFLSTLDQVCKEV 870 (915)
Q Consensus 813 Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF-------~~l~dFl~~~dka~kE~ 870 (915)
+...+..|...+..+.+.+.+-+.|++.-.+.+.+....|. .-|.+|+..+.+-..++
T Consensus 143 v~~~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~~~~~~I 207 (494)
T TIGR02677 143 VHRTLRELYGSFESLADNAQAFMADLQRHRPLEVADYEAFLAYKDRLIAYLQDFIVRLVDRSEQI 207 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778888888888899999999855443334444442 34677777776544443
No 218
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.32 E-value=4e+02 Score=26.02 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002497 814 EQEIISIQSQESVALSMVKEIT 835 (915)
Q Consensus 814 e~ei~~Lq~~~~~~~~~~kel~ 835 (915)
|..+..|+++..+|+.--.++.
T Consensus 53 Es~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 53 ESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHhhHHhccchHHHHH
Confidence 4444555555555544444443
No 219
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=29.25 E-value=8e+02 Score=33.08 Aligned_cols=12 Identities=42% Similarity=0.504 Sum_probs=7.6
Q ss_pred Ccceeeeccccc
Q 002497 203 SSEFLYLGTLVN 214 (915)
Q Consensus 203 sseflylgt~~~ 214 (915)
=+|-+-||-++.
T Consensus 1397 vsEnImlgqlap 1408 (1605)
T KOG0260|consen 1397 VSENIMLGQLAP 1408 (1605)
T ss_pred ceeeeeeccccc
Confidence 466677776663
No 220
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.15 E-value=8.2e+02 Score=27.04 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 811 KKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 811 ~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
..++.+|..+++..+.+.+.++.=++-|-++.. .+|=..|.+|+...-+.|+++-+.+|.
T Consensus 180 ~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~------~D~k~~~~~yae~~i~~~~~~~~~We~ 239 (243)
T cd07666 180 DLLKEEIEKLEDKVECANNALKADWERWKQNMQ------TDLRSAFTDMAENNISYYEECLATWES 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777887777777777766777754422 234445667777777777777666654
No 221
>PF15234 LAT: Linker for activation of T-cells
Probab=29.12 E-value=5.4e+02 Score=27.40 Aligned_cols=15 Identities=40% Similarity=0.877 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 002497 239 GYHKLGSPELNPLPP 253 (915)
Q Consensus 239 ~~~k~~spel~plpp 253 (915)
.|.-+.-|+|-|+|=
T Consensus 67 s~pplsqPDLLpIPR 81 (230)
T PF15234_consen 67 SYPPLSQPDLLPIPR 81 (230)
T ss_pred cCCCCCCcccccCCC
Confidence 577788899888763
No 222
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=29.08 E-value=45 Score=38.95 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 002497 128 VIILAISLSFLSAAVLIAAAAVFIYFRSKHRSSPDK 163 (915)
Q Consensus 128 ~~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~ 163 (915)
++.+||-+.|++|+ +++|+.++++||-...++..+
T Consensus 286 ~vtl~iPl~i~llL-~llLs~Imc~rREG~~~rd~~ 320 (386)
T PF05510_consen 286 LVTLAIPLIIALLL-LLLLSYIMCCRREGVKKRDSK 320 (386)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHheechHHhhcchhc
Confidence 34555555555555 554566666666555555433
No 223
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=29.04 E-value=38 Score=33.15 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=22.0
Q ss_pred ccccccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 111 ISSLLFPHPPSKSAHRHVIILAISLSFLSAAVLIAAAAVFIYFRS 155 (915)
Q Consensus 111 is~l~~p~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~~rr~ 155 (915)
|++.+.|+.++.+.+=. .|+.|++...+. ++.+||||+.
T Consensus 47 i~afvf~~~~p~p~~if-favcI~l~~~s~-----~lLI~WYR~g 85 (118)
T PF10856_consen 47 ISAFVFPQDPPKPLHIF-FAVCILLICISA-----ILLIFWYRQG 85 (118)
T ss_pred hheEEecCCCCCceEEe-hHHHHHHHHHHH-----HhheeehhcC
Confidence 88899998776554433 344333333322 3456777743
No 224
>PRK01844 hypothetical protein; Provisional
Probab=29.02 E-value=83 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 130 ILAISLSFLSAAVLIAAAAVFIYFR 154 (915)
Q Consensus 130 ~~ai~~~~~~~~~~~~~~~~~~~rr 154 (915)
.++|.++|+|++ +=++.+||+-||
T Consensus 4 ~~~I~l~I~~li-~G~~~Gff~ark 27 (72)
T PRK01844 4 WLGILVGVVALV-AGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345555666555 443556666553
No 225
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=28.88 E-value=4.9e+02 Score=27.42 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNS 842 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~ 842 (915)
.+.+++++.++++|++.++..++-|...... . ..+-.+=.+.++.....-..+.++-...|.++++-+-|+.
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g-~-------~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~ 186 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAG-T-------NHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGL 186 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3566777777777776666655555432210 0 0011111123333334444445555567777777776665
Q ss_pred Cc
Q 002497 843 AK 844 (915)
Q Consensus 843 ~k 844 (915)
.+
T Consensus 187 pk 188 (201)
T KOG4603|consen 187 PK 188 (201)
T ss_pred cc
Confidence 43
No 226
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.83 E-value=3.8e+02 Score=28.72 Aligned_cols=111 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMK--ESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~--e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE 840 (915)
+..++.+.+|+.+|+..+.++-+.++..-+.+.. .....|...+.+|.. ....-+.+..-+.+--..+.+|..|...
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~-~~~~De~i~~~l~kF~~~l~ei~~~~~~ 79 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQ-YSSKDAVIETSLTKFSDTLQEMINYHTI 79 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hCCcchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002497 841 NSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERT 877 (915)
Q Consensus 841 d~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er~ 877 (915)
=-...+ ..+-.-|..|++.==+..||.++.=++.
T Consensus 80 L~~q~~---~~l~~~L~~F~k~dl~~vke~kk~FdK~ 113 (200)
T cd07638 80 LFDQAQ---RSIKAQLQTFVKEDLRKFKDAKKQFDKV 113 (200)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 227
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=28.61 E-value=5.4e+02 Score=31.21 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 806 MNEFLKKAEQEIISIQSQESVALSMVKEIT 835 (915)
Q Consensus 806 M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~ 835 (915)
+..-.+.+++++..|+...+++...|+.++
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555665555
No 228
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=28.51 E-value=1.4e+02 Score=28.56 Aligned_cols=10 Identities=20% Similarity=0.830 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002497 857 KEFLSTLDQV 866 (915)
Q Consensus 857 ~dFl~~~dka 866 (915)
++|.+.+++.
T Consensus 67 ~~~~~~i~~i 76 (133)
T PF08359_consen 67 REYLRIIEEI 76 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 229
>PF15431 TMEM190: Transmembrane protein 190
Probab=28.49 E-value=65 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRS 155 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~ 155 (915)
-.-|++..-..+++||..+.+|||.||
T Consensus 60 HmWaL~wtC~gll~Li~~iclFWWAkR 86 (134)
T PF15431_consen 60 HMWALGWTCGGLLLLICSICLFWWAKR 86 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666667756666677777654
No 230
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=28.32 E-value=6.5e+02 Score=28.33 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhcCCCCCCCHHHHHHHHhhCCChHHHHH-HHhhccc-CCCC-------CChHHHHHHHHhCcccHHHHH
Q 002497 549 NVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERK-IKEFKDE-SPFK-------LGPAEKFLRAVLEIPFAFKRV 619 (915)
Q Consensus 549 k~s~eeI~~AIl~~D~~~L~~e~Le~Llk~lPt~EE~~~-Lke~~~d-~ps~-------L~~aEqFl~~l~~IP~~~~RL 619 (915)
+++.++|...|..++.-.++...+..|..++=.-++++. .++...+ .... |...+.|-+.+-+++.++.++
T Consensus 82 ~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l 161 (335)
T PF08429_consen 82 KLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRL 161 (335)
T ss_pred cCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHH----HHHHHHHHHHHHHH--HhchhHHHHHHHHHHhccccccCCCCCceeeeeccccccccccc
Q 002497 620 DAMLYIANFDSEVEYL----KRSFETLQVACGEL--RKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVK 693 (915)
Q Consensus 620 ~allf~~~F~~~~~~l----~~~l~~l~~AceeL--r~S~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvK 693 (915)
+.+-+...+...+... ...+..+.+.-..+ -.......-|+.+|..|..-...
T Consensus 162 ~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~k--------------------- 220 (335)
T PF08429_consen 162 EQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEK--------------------- 220 (335)
T ss_pred HHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHH---------------------
Q ss_pred cCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHH
Q 002497 694 GADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEV 773 (915)
Q Consensus 694 s~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv 773 (915)
++.++..+...+ ..+..|.++...+. +.--.+..|...+
T Consensus 221 ------------a~~~L~~~~~~l----------------------------~~Le~l~~~~~~ip-v~~~~~~~L~~~l 259 (335)
T PF08429_consen 221 ------------AKELLSRPRVSL----------------------------EQLEALLEEAENIP-VSLPSLDKLKDAL 259 (335)
T ss_pred ------------HHHHHhcCCCCH----------------------------HHHHHHHHHHhcCC-CchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 774 AKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQ------EIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 774 ~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~------ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
.+-+.-..+++..+.. ....-.....+..-+..++. ++..|+..+..+..=.++....||
T Consensus 260 ~kak~w~~~i~~ll~~------~~~~~p~~~el~~l~~~~~~L~~~~~~~~~Le~~~~~~~~W~~~~~k~F~ 325 (335)
T PF08429_consen 260 QKAKEWLRQIEELLEQ------NGSKRPTLDELEELVAESEELPVKLEELSDLEKQLKRAEDWMEKAKKLFL 325 (335)
T ss_pred HHHHHHHHHHHHHhcc------cCCCCCcHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhc
No 231
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=28.15 E-value=4.1e+02 Score=31.39 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHH
Q 002497 816 EIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVC 867 (915)
Q Consensus 816 ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~ 867 (915)
......+...+|.+.|++.....|......+.....|-.-|..|...|+...
T Consensus 164 ~y~s~C~fvn~CidIYrk~i~~~Cs~~~~~~~s~st~C~EL~~F~D~Yd~~m 215 (420)
T PTZ00473 164 HYASSCKFVNDCLDIYRKYKDEKCSGNSYNTFRGSTICNELNNFFDKYKEHL 215 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCccHHHHHHHHHHHHHHhhc
Confidence 3345567778889999999988886543333444678888888888887654
No 232
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=28.04 E-value=87 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 128 VIILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 128 ~~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
.+++|+++..+.++++.++++.|+++
T Consensus 33 ~~~v~~v~~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 33 RLAVAIVFAVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677766666666555566666654
No 233
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=27.95 E-value=6.1e+02 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCC
Q 002497 855 VVKEFLSTLDQVCKEVGRINERTIYSS 881 (915)
Q Consensus 855 ~l~dFl~~~dka~kE~~r~~er~~~~s 881 (915)
++.+...+++.+.+.+-+|+|+...+-
T Consensus 131 vlg~l~~EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 131 VLGDLDNEIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 445666677777777888888765444
No 234
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=27.95 E-value=3.1e+02 Score=33.83 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccCCCCccccCchhhHHHH
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQ---------ESVALSMVKEITEYFHGNSAKEEAHPFRIFLVV 856 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~---------~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l 856 (915)
..|.+.+...++.+|..+..+-.. ..-..+.|.+|..||-+..-.-+.--.+||..|
T Consensus 97 ~~F~~~f~~ll~~se~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~L 162 (557)
T PF01153_consen 97 RKFDEFFRELLRQSENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFFDRL 162 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467777777777777776655431 122367889999888765433222234566543
No 235
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=27.94 E-value=2.5e+02 Score=33.45 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 002497 799 SRKFSHSMNEFLKKAEQ-EIISIQSQESVALSMVKEITEY 837 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~-ei~~Lq~~~~~~~~~~kel~~Y 837 (915)
++.|.+.|.+|+++.+. +.+.|++.++...+.++++..-
T Consensus 418 ~q~f~qF~~e~~ek~Kk~q~k~l~~l~~~ag~~l~~~~d~ 457 (473)
T PRK15362 418 QQRFLDFIMEQYEKQKKIEQKRLEELYKGSGAALRDALDA 457 (473)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46789999999988765 5666666666666555555443
No 236
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=27.89 E-value=7.5e+02 Score=27.64 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEY 837 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~Y 837 (915)
.-|..++..-+..+.++|+.+..++...++..++++.+
T Consensus 61 e~fLr~ll~dl~~~~~~V~~l~~~~~~~l~~L~~tv~~ 98 (281)
T PF12018_consen 61 EIFLRILLSDLITCAQRVEELIKRFEAQLEKLKETVKS 98 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777778888888887777777777755
No 237
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.87 E-value=6e+02 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 002497 851 RIFLVVKEFLSTLDQVCKEVGRIN 874 (915)
Q Consensus 851 ~fF~~l~dFl~~~dka~kE~~r~~ 874 (915)
.+|..+.+.+..+++...++..+.
T Consensus 170 ~~~~~~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 170 SIFSEIEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888888888888888887754
No 238
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.71 E-value=7.5e+02 Score=26.60 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHH
Q 002497 809 FLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVC 867 (915)
Q Consensus 809 Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~ 867 (915)
-+.+|+.++.+.+.++.++.+..++-+..|..... .+|=.+|.+|+..--...
T Consensus 136 ~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~------~d~K~~l~~fv~~~m~~~ 188 (211)
T cd07598 136 IISQAESELQKASVDANRSTKELEEQMDNFEKQKI------RDIKTIFSDFVLIEMLFH 188 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 44579999999999999999999988888853322 233334555655443333
No 239
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.71 E-value=5.8e+02 Score=31.34 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 002497 623 LYIANFDSEVEYLKRSFE 640 (915)
Q Consensus 623 lf~~~F~~~~~~l~~~l~ 640 (915)
+++..+...+++|..+..
T Consensus 18 ~~rk~~~k~i~~Le~~k~ 35 (560)
T PF06160_consen 18 IYRKRYYKEIDELEERKN 35 (560)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555444433
No 240
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.67 E-value=3.2e+02 Score=29.78 Aligned_cols=13 Identities=8% Similarity=0.220 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 002497 855 VVKEFLSTLDQVC 867 (915)
Q Consensus 855 ~l~dFl~~~dka~ 867 (915)
.|+.|...+..+|
T Consensus 205 ~l~~y~~~~~~~~ 217 (261)
T cd07648 205 FLASYAEVLSENH 217 (261)
T ss_pred HHHHHHHHHHhcc
Confidence 3455555444333
No 241
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.63 E-value=7.5e+02 Score=30.53 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGN 841 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd 841 (915)
..-.+.|..|+++--++ +....+..+...+.++..||-.
T Consensus 611 r~~i~e~a~~La~R~ee---a~e~qe~L~~~~~~L~~~~~~~ 649 (741)
T KOG4460|consen 611 RKSLREMAERLADRYEE---AKEKQEDLMNRMKKLLHSFHSE 649 (741)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhccccc
Confidence 44556777777665444 4445555667788999999853
No 242
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=27.58 E-value=4.7e+02 Score=29.18 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=47.9
Q ss_pred hchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002497 749 SSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEV---VKLNEEI---AMKESSRKFSHSMNEFLKKAEQEIISIQS 822 (915)
Q Consensus 749 ~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~---l~~~~~~---~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~ 822 (915)
.++.+.|.+|..+..+-++.|...=.++..-++++++. ++..... ...+..|.....+++-+-+|...+..-..
T Consensus 8 nd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~si~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~~~~~ 87 (271)
T COG5034 8 NDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQKEKSD 87 (271)
T ss_pred HHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665555544444433223333333333332 2222211 11234566777777777777666665556
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002497 823 QESVALSMVKEITEYFH 839 (915)
Q Consensus 823 ~~~~~~~~~kel~~YFG 839 (915)
..+.+.....++..|+-
T Consensus 88 l~d~~~~l~~Rh~~~~d 104 (271)
T COG5034 88 LADRAEKLLRRHRKLLD 104 (271)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 66777777777777653
No 243
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=27.57 E-value=7.3e+02 Score=25.95 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=2.2
Q ss_pred hhhHHH
Q 002497 755 LTNVRK 760 (915)
Q Consensus 755 L~~V~k 760 (915)
+..+++
T Consensus 84 i~~i~~ 89 (199)
T PF10112_consen 84 IRRIEK 89 (199)
T ss_pred HHHHHH
Confidence 333333
No 244
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=27.47 E-value=3.9e+02 Score=29.37 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
.-|.+.++.| ......|..-......+.+.+++...=|
T Consensus 193 ~lf~~eL~k~-~~~~~~i~~~~~~Q~~ll~~i~~~~~~~ 230 (296)
T PF13949_consen 193 ALFEEELKKF-DPLQNRIQQNLSKQEELLQEIQEANEEF 230 (296)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555553 2222333333333333444444444333
No 245
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.20 E-value=3.6e+02 Score=28.99 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002497 806 MNEFLKKAEQEIISIQSQESVAL 828 (915)
Q Consensus 806 M~~Fl~~Ae~ei~~Lq~~~~~~~ 828 (915)
++.=+..++.+++.|+.+.+...
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444443
No 246
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=27.01 E-value=7.5e+02 Score=25.90 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 002497 851 RIFLVVKEFLSTLDQVCKEV 870 (915)
Q Consensus 851 ~fF~~l~dFl~~~dka~kE~ 870 (915)
+|-..+..|+..++...+++
T Consensus 140 e~qk~~~~yv~~~k~~q~~~ 159 (165)
T PF09602_consen 140 EWQKVLDAYVEQAKSSQKEL 159 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444
No 247
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=26.99 E-value=6.4e+02 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIMEVVKLNEEIAM--KESSRKFSHSMNEFLKKA 813 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l~~~~~~~~--~e~~d~F~~~M~~Fl~~A 813 (915)
+.....+|.++++.|++|.+..+..-..+. -.....|...+..|--.+
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~ 53 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFEC 53 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666665555443322111100 012567888888887554
No 248
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.94 E-value=3.7e+02 Score=29.06 Aligned_cols=71 Identities=10% Similarity=0.215 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINE 875 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~e 875 (915)
.++....+..||++..+++++....-++.++.+..-.+.|+.+ + . ++=-..|-||-..-.+.+|++.|+.+
T Consensus 134 rekAkKelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~~~g-T----e-WErv~kL~D~n~k~sk~gkD~SRlrs 204 (216)
T KOG4031|consen 134 REKAKKELDDWYDQQNEKLEKTKANNKAEEEALVKENEEFSPG-T----E-WERVAKLCDFNPKSSKQGKDVSRLRS 204 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCC-c----h-HHHHHHHHcCCccchhccccHHHHHH
Confidence 4556778889999999988888877766666666666666654 2 2 22234466777777788888888754
No 249
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=26.85 E-value=8.7e+02 Score=30.26 Aligned_cols=63 Identities=19% Similarity=0.363 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHH---HHHHHHHHH
Q 002497 803 SHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTL---DQVCKEVGR 872 (915)
Q Consensus 803 ~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~---dka~kE~~r 872 (915)
+--+++.+++..+..++ ..+++|.++.++++.|..|-..+.++ ...+.+|-..+ ++-..+.+|
T Consensus 340 hLLLkEL~kht~~a~ek--~~LkeAleaM~Dla~yiNEvkRD~et-----lr~I~efq~SIenL~~pl~~~GR 405 (865)
T KOG2996|consen 340 HLLLKELVKHTDEASEK--RNLKEALEAMEDLAQYINEVKRDNET-----LRVIDEFQLSIENLSQPLHDFGR 405 (865)
T ss_pred HHHHHHHHHhcccCChh--hhHHHHHHHHHHHHHHHhHhhcchHH-----HHHHHHHHHhHHhhcchHHHhCC
Confidence 33444444444333332 36778889999999999987654332 34455665444 333444443
No 250
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=26.66 E-value=8.2e+02 Score=26.26 Aligned_cols=38 Identities=5% Similarity=0.029 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCC
Q 002497 804 HSMNEFLKKAEQEIISIQSQESVALSMVKEI-TEYFHGN 841 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel-~~YFGEd 841 (915)
+++..=+..+..++...+..|..+...+... -.||.++
T Consensus 164 eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~ 202 (251)
T cd07653 164 EKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTD 202 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555566666666666666666555 4577765
No 251
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.58 E-value=4.1e+02 Score=28.57 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002497 767 DVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l 787 (915)
..+++++.+|+..+.+++...
T Consensus 96 p~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 344555555555555554443
No 252
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=26.56 E-value=1e+03 Score=27.39 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 616 FKRVDAMLYI----ANFDSEVEYLKRSFETLQVACGELRK 651 (915)
Q Consensus 616 ~~RL~allf~----~~F~~~~~~l~~~l~~l~~AceeLr~ 651 (915)
..+.+|++.. .++..+.+..+..+++|..=+..|+.
T Consensus 5 ~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKk 44 (319)
T PF09789_consen 5 QSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKK 44 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666553 23445556666666666655555543
No 253
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=26.30 E-value=22 Score=42.18 Aligned_cols=11 Identities=9% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 002497 143 LIAAAAVFIYF 153 (915)
Q Consensus 143 ~~~~~~~~~~r 153 (915)
+++++++|++.
T Consensus 366 vVv~viv~vc~ 376 (439)
T PF02480_consen 366 VVVGVIVWVCL 376 (439)
T ss_dssp -----------
T ss_pred HHHHHHhheee
Confidence 33344444443
No 254
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.23 E-value=90 Score=34.55 Aligned_cols=9 Identities=11% Similarity=-0.093 Sum_probs=4.5
Q ss_pred ccccccccc
Q 002497 305 REISTPARI 313 (915)
Q Consensus 305 ~~~~~~~~~ 313 (915)
|.++|.+.+
T Consensus 135 RaQIA~IV~ 143 (253)
T PF05308_consen 135 RAQIAKIVA 143 (253)
T ss_pred HHHHHHHHh
Confidence 445555544
No 255
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.16 E-value=9.4e+02 Score=26.78 Aligned_cols=213 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHhCcccHHH-HHHHHHHHHHhHHHHHHHHHHHHH-----------------HHHHHHHHHhchhHHHHHHHHHH
Q 002497 603 EKFLRAVLEIPFAFK-RVDAMLYIANFDSEVEYLKRSFET-----------------LQVACGELRKSRMFLKLLEAVLK 664 (915)
Q Consensus 603 EqFl~~l~~IP~~~~-RL~allf~~~F~~~~~~l~~~l~~-----------------l~~AceeLr~S~~L~~lL~lVL~ 664 (915)
+.|+.+|..|..+.. =-+++.-..+....+..++..+.. +....+.|+.=.....-++.+|.
T Consensus 60 ~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~ 139 (291)
T PF10475_consen 60 DSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLE 139 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hccccccCCCCCceeeeeccccccccccccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhc
Q 002497 665 TGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLG 744 (915)
Q Consensus 665 iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klg 744 (915)
-|||... |+-+....++-..=.+.+-+.-|-..+......
T Consensus 140 ~~dy~~A-----------l~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~----------------------------- 179 (291)
T PF10475_consen 140 EGDYPGA-----------LDLIEECQQLLEELKGYSCVRHLSSQLQETLEL----------------------------- 179 (291)
T ss_pred cCCHHHH-----------HHHHHHHHHHHHhcccchHHHHHhHHHHHHHHH-----------------------------
Q ss_pred chhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002497 745 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQE 824 (915)
Q Consensus 745 lq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~ 824 (915)
....+..+|..+ |...|.+.-..-+..+ .-|.+++...+.....=...-......++..++..... ...
T Consensus 180 --i~~~ld~~l~~~--~~~Fd~~~Y~~v~~AY-~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~------~~~ 248 (291)
T PF10475_consen 180 --IEEQLDSDLSKV--CQDFDPDKYSKVQEAY-QLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSES------SEE 248 (291)
T ss_pred --HHHHHHHHHHHH--HHhCCHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccc
Q ss_pred HHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHH
Q 002497 825 SVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCK 868 (915)
Q Consensus 825 ~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~k 868 (915)
+...-.|+++|.-..+|.-- ....+....|++++..|-+...
T Consensus 249 ~~~~~~y~~lC~~v~~~~~~--~cl~~l~~~l~~im~sy~~~~~ 290 (291)
T PF10475_consen 249 RSSKMSYKDLCKQVPSDQFI--PCLLELLEVLWDIMCSYYQMLQ 290 (291)
T ss_pred ccccCCHHHHHhhCCHHHHH--HHHHHHHHHHHHHHHHHHHHhc
No 256
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=26.12 E-value=3e+02 Score=33.13 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=12.0
Q ss_pred CchhhHHHHHHHHHHHH
Q 002497 848 HPFRIFLVVKEFLSTLD 864 (915)
Q Consensus 848 ~p~~fF~~l~dFl~~~d 864 (915)
...++|..|++.+..+-
T Consensus 168 ~i~~vF~~Lk~~L~~ll 184 (497)
T COG2317 168 DVDRVFAELKKELVPLL 184 (497)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34578888888877553
No 257
>PF15345 TMEM51: Transmembrane protein 51
Probab=26.11 E-value=23 Score=38.41 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYF-RSKHRSSP 161 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~r-r~~~~~~~ 161 (915)
..||.+++-+.|+ ||.|++|+-.| |||++...
T Consensus 58 ~SVAyVLVG~Gv~-LLLLSICL~IR~KRr~rq~~ 90 (233)
T PF15345_consen 58 FSVAYVLVGSGVA-LLLLSICLSIRDKRRRRQGE 90 (233)
T ss_pred EEEEEehhhHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 5667666667777 55577888888 66665543
No 258
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=1.2e+03 Score=28.30 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhh-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRI-FLVVKEFLSTLDQVCKEVGRINERT 877 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~f-F~~l~dFl~~~dka~kE~~r~~er~ 877 (915)
+.+|...|+.|.......-..+..+..+++..+.+.+..+.+..... ...+.+ |.++ ..++....+-.++.+|+
T Consensus 275 ~~~~~~~l~~~~~~i~sl~~~~~~yrN~~L~KW~dkt~~~sg~a~~~-~~kf~~~~~i~----~Qi~~~l~d~erl~~rt 349 (483)
T KOG2773|consen 275 SGKFKRSLKEFSLEINSLDFFLLEYRNKVLRKWHDKTQLASGGAAPK-CKKFLIPFSIN----FQIEHFLDDPERLVKRT 349 (483)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc-chhhhccchHH----HHHHHHhhCHHHHHHHh
Confidence 45788899999887777667777777778888888888887665431 111222 3332 33444445555666655
No 259
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.06 E-value=3.2e+02 Score=32.81 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.2
Q ss_pred hhhhhHHHHHHHH
Q 002497 799 SRKFSHSMNEFLK 811 (915)
Q Consensus 799 ~d~F~~~M~~Fl~ 811 (915)
..+|.+.|.++++
T Consensus 67 ~~~l~e~l~eiy~ 79 (460)
T KOG3771|consen 67 SKKLAESLQEIYE 79 (460)
T ss_pred HHHHHHHHHHhcC
Confidence 3445555554443
No 260
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=25.88 E-value=1.4e+02 Score=30.99 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.5
Q ss_pred HhccCCCCCCCC
Q 002497 153 FRSKHRSSPDKT 164 (915)
Q Consensus 153 rr~~~~~~~~~~ 164 (915)
||+.+|..+...
T Consensus 172 RR~~rrsppeps 183 (215)
T PF05084_consen 172 RRTGRRSPPEPS 183 (215)
T ss_pred HhhccCCCCCCC
Confidence 455445444333
No 261
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=25.75 E-value=78 Score=23.23 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=3.9
Q ss_pred HHHHHhcc
Q 002497 149 VFIYFRSK 156 (915)
Q Consensus 149 ~~~~rr~~ 156 (915)
+++++|||
T Consensus 18 ~~i~~rrK 25 (26)
T TIGR03024 18 IVILRRRK 25 (26)
T ss_pred HHHHhhcc
Confidence 44445554
No 262
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.65 E-value=7.7e+02 Score=27.85 Aligned_cols=28 Identities=7% Similarity=0.222 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 812 KAEQEIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 812 ~Ae~ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
.++.++...+..++.+.+.|++.-..|.
T Consensus 118 ~~~~~i~~a~~~l~~a~~~~~R~~~L~~ 145 (346)
T PRK10476 118 SANEQVERARANAKLATRTLERLEPLLA 145 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 263
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=25.58 E-value=1.3e+02 Score=35.49 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 002497 552 VDEVCEGLL 560 (915)
Q Consensus 552 ~eeI~~AIl 560 (915)
.+....-+.
T Consensus 321 ~~~~~~g~~ 329 (409)
T KOG4590|consen 321 PDSGRSGIN 329 (409)
T ss_pred ccccccccC
Confidence 333333333
No 264
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.44 E-value=4.6e+02 Score=27.94 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 002497 821 QSQESVALSMVKEITE 836 (915)
Q Consensus 821 q~~~~~~~~~~kel~~ 836 (915)
......+.+.++++++
T Consensus 193 ~~~~e~~ie~~k~~ie 208 (216)
T cd07627 193 EIYLESAIESQKELIE 208 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444443
No 265
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=25.41 E-value=91 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKH 157 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~ 157 (915)
.+.++-+.+..+.-+++.+++|+|||||-
T Consensus 46 ~a~a~f~~l~lv~Gvvaav~~W~~R~~RG 74 (167)
T PF10821_consen 46 DADALFVLLGLVLGVVAAVAVWLWRRRRG 74 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 67775555555554777777888886653
No 266
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=25.37 E-value=8.7e+02 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhch
Q 002497 629 DSEVEYLKRSFETLQVACGELRKSR 653 (915)
Q Consensus 629 ~~~~~~l~~~l~~l~~AceeLr~S~ 653 (915)
++.++-=+..|..+..+|+.|-+|.
T Consensus 8 ee~le~d~~~L~k~kk~vkai~~sg 32 (213)
T cd07640 8 EESLEGDQASLQRIKKIVKAIHNSG 32 (213)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3444444556777777777776663
No 267
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=25.31 E-value=7.4e+02 Score=25.26 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 801 KFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 801 ~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
.....-..|+++...+-..+...+.+ +..+|.++|.
T Consensus 104 ~~~~~we~f~~e~~~~~~~vdee~~~---~~~~l~e~Y~ 139 (145)
T PF14942_consen 104 QRKQEWEEFMKEQQQKKQRVDEEFRE---KEERLKEQYS 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34444455666666665555555443 3344455554
No 268
>PLN02939 transferase, transferring glycosyl groups
Probab=25.29 E-value=1.7e+03 Score=29.54 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=21.5
Q ss_pred CHHHHHHHHhcCCCCCCCHHH-----HHHHHhhCCChHHHH
Q 002497 551 TVDEVCEGLLEGNSDTLGAEL-----LESLLKMAPTKEEER 586 (915)
Q Consensus 551 s~eeI~~AIl~~D~~~L~~e~-----Le~Llk~lPt~EE~~ 586 (915)
-.++++.+|.+....+|-.++ |+.|.+++-.+|+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (977)
T PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQ 169 (977)
T ss_pred cHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888777666654432 445556665555543
No 269
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=25.28 E-value=77 Score=23.20 Aligned_cols=11 Identities=9% Similarity=0.005 Sum_probs=5.6
Q ss_pred HHHHHHHhccC
Q 002497 147 AAVFIYFRSKH 157 (915)
Q Consensus 147 ~~~~~~rr~~~ 157 (915)
+.++++||||.
T Consensus 13 L~~~~~rRr~~ 23 (26)
T TIGR03501 13 LLLLGLRRRRX 23 (26)
T ss_pred HHHHHHHHhhc
Confidence 34455565543
No 270
>PRK00523 hypothetical protein; Provisional
Probab=25.27 E-value=1.1e+02 Score=27.76 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFR 154 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr 154 (915)
+.++|.+.|+|++ +=.+.+||+-||
T Consensus 4 ~~l~I~l~i~~li-~G~~~Gffiark 28 (72)
T PRK00523 4 IGLALGLGIPLLI-VGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556666666654 333456666553
No 271
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.20 E-value=6.3e+02 Score=31.30 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002497 770 SSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEF--LKKAEQEIISIQSQESVALSMVKEITEYFHG 840 (915)
Q Consensus 770 ~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~F--l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGE 840 (915)
...|.+..+.+.+++.+.......-..+--..|.+.++.| +.-++.++..|+...+++.+.++.|-.|-++
T Consensus 405 na~V~~~N~ri~nf~k~~~~sk~~le~~~v~~~~~~VQe~~~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ 477 (758)
T COG4694 405 NAQVVNHNERIKNFEKQKKSSKEQLEKFLVNEFKSDVQEYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKE 477 (758)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555566666665554432211112234456666666 4567778889999888888888888777764
No 272
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=25.14 E-value=1.4e+02 Score=38.01 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=13.8
Q ss_pred CCCCCCCCCCcccccccccc
Q 002497 294 SPRGSSGRKESREISTPARI 313 (915)
Q Consensus 294 sp~~s~~~~~~~~~~~~~~~ 313 (915)
||.--+|++.|||-.-+|.-
T Consensus 1779 spervlgrrqsrrdsvpvrr 1798 (2033)
T PHA03309 1779 SPERVLGRRQSRRDSVPVRR 1798 (2033)
T ss_pred CHHHhhccccccccccceee
Confidence 45556777888887777653
No 273
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.10 E-value=5.2e+02 Score=33.47 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=28.8
Q ss_pred hhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 746 QVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 746 q~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
+.|..+...|.+.+..|+.-+.++...+..|+..+...+.+.+
T Consensus 340 ~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~q 382 (980)
T KOG0980|consen 340 REVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQ 382 (980)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666667777777777777777777777777766554443
No 274
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.05 E-value=1.2e+03 Score=27.80 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc-----cccccCCCCCceeeeecccccccccc
Q 002497 618 RVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTG-----NRMNVGTNRGDAHAFKLDTLLKLVDV 692 (915)
Q Consensus 618 RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iG-----N~LN~gt~rG~A~GFkLsSL~KL~dv 692 (915)
|-+.-.++..+.....++...|..|.+-...++. +-+..+ .|||.|
T Consensus 161 rrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~---------~~~~~~~~s~R~y~e~~-------------------- 211 (426)
T smart00806 161 QRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS---------SSLSASGSSNRAYVESS-------------------- 211 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhccCCCcchHHHHHh--------------------
Q ss_pred ccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhhhhhHHHhhcCC-------
Q 002497 693 KGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMD------- 765 (915)
Q Consensus 693 Ks~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~EL~~V~kAAkvd------- 765 (915)
.+=|.-..+.++.+ .+||..|-.+-+-|
T Consensus 212 ------k~kL~~~Sd~lltk---------------------------------------VDDLQD~vE~LRkDV~~RgVR 246 (426)
T smart00806 212 ------KKKLSEDSDSLLTK---------------------------------------VDDLQDIIEALRKDVAQRGVR 246 (426)
T ss_pred ------HHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHHHHcCCC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 766 -----SDVLSSEVAKLAAGITKIMEVVKLNEEIAMK--ESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEI 834 (915)
Q Consensus 766 -----le~L~sdv~kL~~gl~kv~~~l~~~~~~~~~--e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel 834 (915)
++.+..|+....+.|+++++.++....+=.. +.+-..+=.=+.|+..-+.-+..|+++++++.+.|.-+
T Consensus 247 p~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lV 322 (426)
T smart00806 247 PSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLV 322 (426)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 275
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=25.03 E-value=6.4e+02 Score=27.43 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002497 628 FDSEVEYLKRSFETLQVACGEL 649 (915)
Q Consensus 628 F~~~~~~l~~~l~~l~~AceeL 649 (915)
|++++.+|...++....+++.|
T Consensus 5 ld~df~~le~~~d~~~~~~~~l 26 (223)
T cd07592 5 LDDEFLEMERKTDATSKLVEDL 26 (223)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 276
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.01 E-value=1.2e+02 Score=31.52 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred hhhhHHHHHHhhcCCCHHHHHHHHhcCCCCCCCHHHHHHHHhh
Q 002497 536 KKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKM 578 (915)
Q Consensus 536 KRaqNI~I~L~klk~s~eeI~~AIl~~D~~~L~~e~Le~Llk~ 578 (915)
.|-..++......+++.|+|+.+.-.++ ...++.|+.|
T Consensus 49 ~K~rrv~Fav~~~~VP~EeIvravseln-----k~i~Ekliem 86 (181)
T COG4345 49 DKLRRVAFAVFRGKVPPEEIVRAVSELN-----KRIYEKLIEM 86 (181)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHh-----HHHHHHHHHh
Confidence 3444566666666899999999998876 4555656553
No 277
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.00 E-value=4.8e+02 Score=29.47 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcc
Q 002497 807 NEFLKKAEQEIISIQSQESVALSMV----KEITEYFH 839 (915)
Q Consensus 807 ~~Fl~~Ae~ei~~Lq~~~~~~~~~~----kel~~YFG 839 (915)
+--|++|+.||++|+.-.+.|.+.. +.|-.||-
T Consensus 116 QLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 3457889999999998887776654 45667775
No 278
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=25.00 E-value=4.1e+02 Score=30.52 Aligned_cols=116 Identities=25% Similarity=0.370 Sum_probs=59.4
Q ss_pred ChHHHHHHHhhcccCCCCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhchhHHHHH
Q 002497 581 TKEEERKIKEFKDESPFKLGPAEKFLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRS-FETLQVACGELRKSRMFLKLL 659 (915)
Q Consensus 581 t~EE~~~Lke~~~d~ps~L~~aEqFl~~l~~IP~~~~RL~allf~~~F~~~~~~l~~~-l~~l~~AceeLr~S~~L~~lL 659 (915)
+.|-+-.+++...|+ .+++.-+.|.++++. ..|.|+..|.+.++-|-.. |+.-..|...+- +-..||
T Consensus 21 Y~e~e~~VREATNdD--PWGPsG~lMgeIaea-------Tfmry~EdFpelmnmL~qRMLedNK~~WRRVY---KSLiLL 88 (499)
T KOG2057|consen 21 YPEAEMDVREATNDD--PWGPSGPLMGEIAEA-------TFMRYMEDFPELMNMLFQRMLEDNKDAWRRVY---KSLILL 88 (499)
T ss_pred chHHHHHHHhhccCC--CCCCccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHH
Confidence 445555677777765 567666666666532 2233445555555443221 111111111111 112345
Q ss_pred HHHHHhccccccCCCCCceeeeeccccc--cccccccCCCCccHHHHHHHHHHH
Q 002497 660 EAVLKTGNRMNVGTNRGDAHAFKLDTLL--KLVDVKGADGKTTLLHFVVQEIIR 711 (915)
Q Consensus 660 ~lVL~iGN~LN~gt~rG~A~GFkLsSL~--KL~dvKs~D~k~TLLhyVVq~Iir 711 (915)
.++|.-|---=.... ..+.+.|-.|. +.+|-++.|.+.++-|-|- +|++
T Consensus 89 aYLikNGSER~VqeA--REh~YdLR~LEnYhfiDEhGKDQGINIR~kVK-eilE 139 (499)
T KOG2057|consen 89 AYLIKNGSERFVQEA--REHAYDLRRLENYHFIDEHGKDQGINIRHKVK-EILE 139 (499)
T ss_pred HHHHhcccHHHHHHH--HHHHHHHHhhhhccchhhhCccccccHHHHHH-HHHH
Confidence 555553321111111 23566666654 6778889999999999875 5654
No 279
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=24.82 E-value=3.7e+02 Score=28.32 Aligned_cols=82 Identities=13% Similarity=0.234 Sum_probs=0.0
Q ss_pred hhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 748 VSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVA 827 (915)
Q Consensus 748 V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~ 827 (915)
+..+..-|..--..++.--+.|..|+.+|...+..+..++...+.. -......+..|+..-..+|-.|+.+...+
T Consensus 79 L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~-----~~~ee~~~~~y~~~eh~rll~LWr~v~~l 153 (182)
T PF15035_consen 79 LAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAE-----WREEEENFNQYLSSEHSRLLSLWREVVAL 153 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhcccccHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 002497 828 LSMVKEI 834 (915)
Q Consensus 828 ~~~~kel 834 (915)
...|.++
T Consensus 154 Rr~f~el 160 (182)
T PF15035_consen 154 RRQFAEL 160 (182)
T ss_pred HHHHHHH
No 280
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.80 E-value=1.3e+03 Score=27.75 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhhchhhhhhhHHHh---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002497 746 QVVSSLSGELTNVRKA---AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQS 822 (915)
Q Consensus 746 q~V~~ls~EL~~V~kA---Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~ 822 (915)
+.+..+..||..+.+- ..-....|..++++++.++..++.++...... ...+..=+.+.+..+..|+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~---------l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADD---------LKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHhhHHHHHHHHHHHHH
Q ss_pred HH---HHHHHHHHHHHhhccCCCCccc-cCchhhH--HHHHHHHHHHHHHHHHHHHhhhhh
Q 002497 823 QE---SVALSMVKEITEYFHGNSAKEE-AHPFRIF--LVVKEFLSTLDQVCKEVGRINERT 877 (915)
Q Consensus 823 ~~---~~~~~~~kel~~YFGEd~~k~e-~~p~~fF--~~l~dFl~~~dka~kE~~r~~er~ 877 (915)
+. ...+..+-....++|.++.-.. .++.+.- .-+.-.+..+.++..|.-+.-+.+
T Consensus 109 q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~ 169 (420)
T COG4942 109 QEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKAT 169 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH
No 281
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.70 E-value=6.8e+02 Score=27.99 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=32.3
Q ss_pred hchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 749 SSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 749 ~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
...-.||...+......+..|...+.+|...|.+.+++|.
T Consensus 66 ~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 66 QQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888899999999999988887775
No 282
>PHA00728 hypothetical protein
Probab=24.69 E-value=1.4e+02 Score=29.38 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 765 dle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
++++|..+-.+|++.+.+++..+.
T Consensus 6 eveql~keneelkkkla~leal~n 29 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHc
Confidence 456677777777777777766554
No 283
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=24.57 E-value=60 Score=30.99 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhccCCC
Q 002497 143 LIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 143 ~~~~~~~~~~rr~~~~~ 159 (915)
||+++.++.+||+||+-
T Consensus 33 ll~c~c~~~~~r~r~~~ 49 (102)
T PF11669_consen 33 LLSCCCACRHRRRRRRL 49 (102)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44455555555555443
No 284
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=24.44 E-value=6.7e+02 Score=26.95 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhh-HHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 810 LKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRI-FLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 810 l~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~f-F~~l~dFl~~~dka~kE~~r~~er 876 (915)
+..++.+|..++.....+...|..|..-.- .|. .+| ...+.||-.++....+..-+.+++
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~~k-----~El--~rF~~erv~dfk~~l~~~le~~i~~q~~ 211 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKTIK-----KEI--ERFEKNRVKDFKDIIIKYLESLLNTQQQ 211 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555556666665544332 121 233 345778887777776655554443
No 285
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=24.40 E-value=1.2e+02 Score=26.13 Aligned_cols=27 Identities=7% Similarity=0.373 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 126 RHVIILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 126 ~~~~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
.++.++++.+++++|+ ++++-+|..|-
T Consensus 20 ~flfl~~~l~PiL~v~-~Vg~YGF~VWm 46 (56)
T PF06796_consen 20 AFLFLAVVLFPILAVA-FVGGYGFIVWM 46 (56)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445667889999999 88787777774
No 286
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.39 E-value=7.9e+02 Score=30.80 Aligned_cols=197 Identities=17% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhccccccCCC
Q 002497 603 EKFLRAVLEI-PFAFKRVDAMLYIAN-------FDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTN 674 (915)
Q Consensus 603 EqFl~~l~~I-P~~~~RL~allf~~~-------F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN~gt~ 674 (915)
+.|+.+=..| ..|++||..+.-+.. |...++.++...+.+...-.+| ++.|.++++-+..++--.+
T Consensus 12 ~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ma~~h~~l--~~~l~~~i~~~~k~~~~~~---- 85 (611)
T KOG2398|consen 12 ADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAMAKSHLEL--SRELQDLIKDVAKYYAEQL---- 85 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH----
Q ss_pred CCceeeeeccccccccccccCCCCccHHHHHHHHHHHHhcCCCCCCCCCCcccccccCCcchhHHHHHhcchhhhchhhh
Q 002497 675 RGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGE 754 (915)
Q Consensus 675 rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVq~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klglq~V~~ls~E 754 (915)
..-+-.+..-..+|...|..+.....-++++..-... ..++.+.....+
T Consensus 86 -k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~------------------------------~~~~e~e~~~~~ 134 (611)
T KOG2398|consen 86 -KTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYL------------------------------HRCQEKESLKEK 134 (611)
T ss_pred -HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH------------------------------HHHHhhhhcccc
Q ss_pred hhhHHHh--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 755 LTNVRKA--AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMK---ESSRKFSHSMNEFLKKAEQEIISIQSQESVALS 829 (915)
Q Consensus 755 L~~V~kA--Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~---e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~ 829 (915)
....+++ ++..+.....++..+...++++++.....-....+ +.+..-...|+.++..+..++........++.+
T Consensus 135 ~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E 214 (611)
T KOG2398|consen 135 EKRKKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVME 214 (611)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q ss_pred HHHHHHh
Q 002497 830 MVKEITE 836 (915)
Q Consensus 830 ~~kel~~ 836 (915)
.|+..++
T Consensus 215 ~~k~~le 221 (611)
T KOG2398|consen 215 EFKLTLE 221 (611)
T ss_pred HHHHhhc
No 287
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=24.19 E-value=5.9e+02 Score=25.07 Aligned_cols=84 Identities=10% Similarity=0.109 Sum_probs=43.4
Q ss_pred chhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 750 SLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALS 829 (915)
Q Consensus 750 ~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~ 829 (915)
.|.+++-.......-+--++...+++|..+|+.|.+.++..-.. ..+.+.... .-+++++..+..|+.....+..
T Consensus 12 ~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~----~~~~LL~q~-~~~~~~~~~l~~v~~~v~~L~~ 86 (132)
T PF10392_consen 12 QFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTS----NHEDLLSQA-SSIEELESVLQAVRSSVESLQS 86 (132)
T ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh----CHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence 44555433222223334556778889999999888877643211 011111111 1234444555566666666666
Q ss_pred HHHHHHhhc
Q 002497 830 MVKEITEYF 838 (915)
Q Consensus 830 ~~kel~~YF 838 (915)
.|++|-.=.
T Consensus 87 s~~RL~~eV 95 (132)
T PF10392_consen 87 SYERLRSEV 95 (132)
T ss_pred HHHHHHHHH
Confidence 666554433
No 288
>PLN03099 PIR Protein PIR; Provisional
Probab=24.17 E-value=1.7e+03 Score=30.19 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=81.6
Q ss_pred cccccChhhhhHHHHHHhhcCCCHHHHHHHHhcC---C--CCCCCHHHHHHHHhhCC---ChHHHHHHHhh-cccCCCCC
Q 002497 529 ENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEG---N--SDTLGAELLESLLKMAP---TKEEERKIKEF-KDESPFKL 599 (915)
Q Consensus 529 eisvLD~KRaqNI~I~L~klk~s~eeI~~AIl~~---D--~~~L~~e~Le~Llk~lP---t~EE~~~Lke~-~~d~ps~L 599 (915)
.+.|||+.-.+-..|+-=+-+ -.+.+|+-+.++ + .+..++..+-.|.|++= .-++++..|.- ..|- +..
T Consensus 106 t~eVLepEi~KL~~fm~fq~~-Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~lnmfa~LD~LKNmKAsi~NDf-S~y 183 (1232)
T PLN03099 106 TYQVLDLEIGRLREIQRWQSS-AASKLAADMQRFSRPERRINGPTVTHMWSMLKLLDVLLQLDHLKNAKASIPNDF-SWY 183 (1232)
T ss_pred HHHhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHHHHHHHHHHhhhhccccccH-HHH
Confidence 467998887766555421111 123333333221 1 23667777776666543 33444444432 2232 456
Q ss_pred ChH-HHHHHHHhCcccHHHHHHHH-HHHHHhHHHHHHHH----------HHHHHHHHHHHHHHhchhH-----HHHHHHH
Q 002497 600 GPA-EKFLRAVLEIPFAFKRVDAM-LYIANFDSEVEYLK----------RSFETLQVACGELRKSRMF-----LKLLEAV 662 (915)
Q Consensus 600 ~~a-EqFl~~l~~IP~~~~RL~al-lf~~~F~~~~~~l~----------~~l~~l~~AceeLr~S~~L-----~~lL~lV 662 (915)
-++ .||+..|.+-.-.++-++-| +|..+=......|+ ..|..|..-|-+.-+++.. +.+|--|
T Consensus 184 kRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~gyediL~~ivn~C~~~yE~~~yl~p~EKH~LlrV 263 (1232)
T PLN03099 184 KRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVNNVEDILQVLIVFCLESLESDFVLLYSERHILLRV 263 (1232)
T ss_pred HHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCceecCccceeEEEe
Confidence 788 99999887754444432222 22222222222222 2334444445444444321 2233345
Q ss_pred HHhccccccCCCCCceeeeeccccccccccccCCCCccHHHHHH
Q 002497 663 LKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVV 706 (915)
Q Consensus 663 L~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVV 706 (915)
+.+|=||=.++.+.+..-||--.|.||..+= ...-.++|.+.
T Consensus 264 m~f~l~L~ds~~k~~~~~~Kri~i~rldkiF--~~~y~I~~~m~ 305 (1232)
T PLN03099 264 LPVLVVLATSSEKEGESLFKRIKINRLINIF--QREYLIVNHMG 305 (1232)
T ss_pred eeeeEEEecccccchHHHhhhccHHHHHHHh--cchHHHHHhHH
Confidence 6666666664333333335544555554432 22334444443
No 289
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.14 E-value=5.9e+02 Score=26.25 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=41.0
Q ss_pred hchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 749 SSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVA 827 (915)
Q Consensus 749 ~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~ 827 (915)
..|..+-..|.+.+.-=.+.|.+-|..|.....++.+.+... ..+..++....|+..|+.+-..+..++..+..+
T Consensus 77 ~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~----~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 77 EKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSEN----SEGANEKLQPAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp HGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-------SS-GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555444445666666666666666666666433 123355666677777777666666666655443
No 290
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.14 E-value=7.4e+02 Score=24.87 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002497 851 RIFLVVKEFLSTLDQVCKE 869 (915)
Q Consensus 851 ~fF~~l~dFl~~~dka~kE 869 (915)
.+...|..+...|.++.+.
T Consensus 89 ~~~~g~~~~~~~l~~~L~~ 107 (165)
T PF01025_consen 89 SLLEGLEMILKQLEDILEK 107 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555443
No 291
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.01 E-value=1.4e+03 Score=28.14 Aligned_cols=295 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHhcCCCCCCC---HHHHHHHHhhCCChHHHHHHHhhccc----CCCCCChHHHHHHHHh
Q 002497 538 SQNIAILLRALNVTVDEVCEGLLEGNSDTLG---AELLESLLKMAPTKEEERKIKEFKDE----SPFKLGPAEKFLRAVL 610 (915)
Q Consensus 538 aqNI~I~L~klk~s~eeI~~AIl~~D~~~L~---~e~Le~Llk~lPt~EE~~~Lke~~~d----~ps~L~~aEqFl~~l~ 610 (915)
+..+|++|++=+ ...++++...-.+.++ .|-|..+.++-=+-+-..++++++.+ .-.-+.+.|--++..=
T Consensus 15 ~~~~g~~lRkk~---~~rI~~LEe~K~el~~lPv~dEi~kVK~L~L~GQTe~~Fe~Wrq~W~di~~~~fadvEE~lfeAE 91 (570)
T COG4477 15 AYAVGYLLRKKN---YQRIDKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFADVEEHLFEAE 91 (570)
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCccHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q ss_pred CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc------------hhHHHHHHHHHHhccccccCCCCCce
Q 002497 611 EIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKS------------RMFLKLLEAVLKTGNRMNVGTNRGDA 678 (915)
Q Consensus 611 ~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S------------~~L~~lL~lVL~iGN~LN~gt~rG~A 678 (915)
....=..=..|-.-....++.+..+..+++.+..+..+|..| ..+.++-.-||+
T Consensus 92 ~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~-------------- 157 (570)
T COG4477 92 ALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLA-------------- 157 (570)
T ss_pred HhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------
Q ss_pred eeeeccccccccccccCCCCccHHHHHH------------------------HHHHHHhcCCCCCCCCCCcccccccCCc
Q 002497 679 HAFKLDTLLKLVDVKGADGKTTLLHFVV------------------------QEIIRAEGSRLSGANPDTKTEKTQRSSF 734 (915)
Q Consensus 679 ~GFkLsSL~KL~dvKs~D~k~TLLhyVV------------------------q~Iir~e~~~l~~~~~~~~~~~~~~~~f 734 (915)
.++.+.+.....+.|-.+=..-|=+|++ +.|++.=+..+ .+.+..+
T Consensus 158 n~~~~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~----------~e~~~~l 227 (570)
T COG4477 158 NRHQYGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLL----------AELQTEL 227 (570)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhc
Q ss_pred chhHHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 002497 735 QDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAE 814 (915)
Q Consensus 735 ~ed~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae 814 (915)
|+.++-.+.|++.+ +.+--.+.--.|.+.+..|...+.+....+..-+.....+......+.|..+++.-+
T Consensus 228 P~ql~~Lk~Gyr~m---------~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE 298 (570)
T COG4477 228 PGQLQDLKAGYRDM---------KEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLE 298 (570)
T ss_pred hHHHHHHHHHHHHH---------HHccCCcccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH------------------------------------------------HHHHHHHHHHHHHHHHhhccCCCCccc
Q 002497 815 QEIIS------------------------------------------------IQSQESVALSMVKEITEYFHGNSAKEE 846 (915)
Q Consensus 815 ~ei~~------------------------------------------------Lq~~~~~~~~~~kel~~YFGEd~~k~e 846 (915)
.++.+ .++.++++.+.+.+++.-+++..-.
T Consensus 299 ~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~-- 376 (570)
T COG4477 299 REVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVA-- 376 (570)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 847 AHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 847 ~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
|..|.+=+..++++.+++.+-|+.
T Consensus 377 ------yS~lq~~l~~~~~~l~~i~~~q~~ 400 (570)
T COG4477 377 ------YSELQDNLEEIEKALTDIEDEQEK 400 (570)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhhHHH
No 292
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=24.00 E-value=2.6e+02 Score=32.44 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHH-HHHH
Q 002497 826 VALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCK-EVGR 872 (915)
Q Consensus 826 ~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~k-E~~r 872 (915)
+..+.++++.+||-=+|.. .+|..|-..++..++..+...+ ++++
T Consensus 60 ~~e~~i~r~~dffvI~Pv~--ldP~gIv~k~~hll~t~e~~~~~~v~~ 105 (355)
T PF07431_consen 60 DPESLIDRLLDFFVIEPVD--LDPTGIVRKLKHLLRTYEDRFEKEVKR 105 (355)
T ss_pred chHHHHHHHHhheecCcCC--CCchhhHHHHHHHHHhhHHHHHHHHHH
Confidence 3467789999999988765 5678888888888888765544 4444
No 293
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=23.99 E-value=38 Score=39.13 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 002497 132 AISLSFLSAAVLIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 132 ai~~~~~~~~~~~~~~~~~~~rr~~~~~ 159 (915)
||++++=.++ ||+..++.++||+|+||
T Consensus 324 ~vgLG~P~l~-li~Ggl~v~~~r~r~~~ 350 (350)
T PF15065_consen 324 AVGLGVPLLL-LILGGLYVCLRRRRKRK 350 (350)
T ss_pred HHHhhHHHHH-HHHhhheEEEeccccCC
Confidence 3444444444 33333344445555543
No 294
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.83 E-value=7.4e+02 Score=28.85 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=4.6
Q ss_pred CCCHHHHHHHH
Q 002497 549 NVTVDEVCEGL 559 (915)
Q Consensus 549 k~s~eeI~~AI 559 (915)
++..+|-|+.|
T Consensus 407 rv~~DdRCrvL 417 (498)
T KOG4849|consen 407 RVGHDDRCRVL 417 (498)
T ss_pred ccccchHHHHH
Confidence 34444444433
No 295
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.75 E-value=7.5e+02 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 002497 857 KEFLSTLDQVCKEVGR 872 (915)
Q Consensus 857 ~dFl~~~dka~kE~~r 872 (915)
..|+..|.-..+++.+
T Consensus 88 ~~~~~g~~~~~~~l~~ 103 (165)
T PF01025_consen 88 ESLLEGLEMILKQLED 103 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 296
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.68 E-value=8.5e+02 Score=33.17 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 002497 801 KFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 801 ~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~ 843 (915)
........=.+++..++..++..........++|-.|...+..
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3445555556777778888888888888888888899886643
No 297
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=23.56 E-value=7.1e+02 Score=24.48 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=13.3
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 002497 755 LTNVRKAAAMDSDVLSSEVAKLAAGITKIME 785 (915)
Q Consensus 755 L~~V~kAAkvdle~L~sdv~kL~~gl~kv~~ 785 (915)
...++.+.+ -++.|...+..|...+++++.
T Consensus 64 ~~~~~~~~~-~l~~v~~~v~~L~~s~~RL~~ 93 (132)
T PF10392_consen 64 ASSIEELES-VLQAVRSSVESLQSSYERLRS 93 (132)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334444333 344444444444444444443
No 298
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.45 E-value=7.6e+02 Score=30.56 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=17.9
Q ss_pred hhhHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Q 002497 755 LTNVRKAAAMDSDVLSSEVAKLAAGITKIME 785 (915)
Q Consensus 755 L~~V~kAAkvdle~L~sdv~kL~~gl~kv~~ 785 (915)
|..+.+=-++++++|-....++...|..+..
T Consensus 309 L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~ 339 (557)
T COG0497 309 LKSLARKYGVTIEDLLEYLDKIKEELAQLDN 339 (557)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 4444444456666666666666666665543
No 299
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=23.28 E-value=3.6e+02 Score=29.17 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHhcchhhhchhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 002497 738 VEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEI 817 (915)
Q Consensus 738 ~e~~klglq~V~~ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei 817 (915)
++.+.-..+.+..+..+...++.+ +++|...|.+-...|+++++.|+.++ .++..-+-+|.+++
T Consensus 52 l~~kd~ef~~llkla~eq~k~e~~----m~~Lea~VEkrD~~IQqLqk~LK~aE------------~iLtta~fqA~qKL 115 (272)
T KOG4552|consen 52 LDSKDDEFKTLLKLAPEQQKREQL----MRTLEAHVEKRDEVIQQLQKNLKSAE------------VILTTACFQANQKL 115 (272)
T ss_pred HHhccHHHHHHHHHhHhHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002497 818 ISIQSQESVALSMVKEITEY 837 (915)
Q Consensus 818 ~~Lq~~~~~~~~~~kel~~Y 837 (915)
+.+++-.+..... .++..|
T Consensus 116 ksi~~A~krpvsS-EelIKy 134 (272)
T KOG4552|consen 116 KSIKEAEKRPVSS-EELIKY 134 (272)
T ss_pred HHHHHHhcCCCCH-HHHHHH
No 300
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.28 E-value=40 Score=39.48 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=5.0
Q ss_pred HHHHHHHH-hcc
Q 002497 146 AAAVFIYF-RSK 156 (915)
Q Consensus 146 ~~~~~~~r-r~~ 156 (915)
.++.|||- |.|
T Consensus 385 GfLcWwf~crgk 396 (397)
T PF03302_consen 385 GFLCWWFICRGK 396 (397)
T ss_pred HHHhhheeeccc
Confidence 34444443 554
No 301
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.21 E-value=5.7e+02 Score=28.89 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002497 769 LSSEVAKLAAGITKIMEVVKL 789 (915)
Q Consensus 769 L~sdv~kL~~gl~kv~~~l~~ 789 (915)
...++.+|++.+-.+++.+..
T Consensus 178 ~l~~l~~l~~~l~~lr~~l~~ 198 (322)
T COG0598 178 ELERLGELRRSLVYLRRALAP 198 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666655543
No 302
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.19 E-value=1.1e+03 Score=26.74 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 768 VLSSEVAKLAAGITKIMEVVKLNEEIA-MKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEI 834 (915)
Q Consensus 768 ~L~sdv~kL~~gl~kv~~~l~~~~~~~-~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel 834 (915)
.|.+.+.+|++.+..++..+..+.... .....+.++.....|...+..-...++..+..|.++|.++
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEA 202 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777766665443221 1122345555555555555555555555555555554433
No 303
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.11 E-value=4.9e+02 Score=33.37 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 002497 810 LKKAEQEIISIQ 821 (915)
Q Consensus 810 l~~Ae~ei~~Lq 821 (915)
+++++.+|+.+.
T Consensus 136 ~ke~etelE~~~ 147 (1265)
T KOG0976|consen 136 KKENEIEIENLN 147 (1265)
T ss_pred HHHHHHHHHhhH
Confidence 344444444433
No 304
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=22.94 E-value=9.5e+02 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQES 825 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~ 825 (915)
...|...|..||+.--.-.+++-..++
T Consensus 167 v~Dfk~~m~~yLe~qI~fyqqI~~kl~ 193 (199)
T cd07626 167 VRDFKSMMRNYLQQQIEFYQKIAAKLE 193 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554333333333333
No 305
>PF09057 Smac_DIABLO: Second Mitochondria-derived Activator of Caspases; InterPro: IPR015142 This entry represents Smac (Second Mitochondria-derived Activator of Caspases) and DIABLO (Direct IAP-Binding protein with Low PI) proteins and their homologues. Smac promotes apoptosis by activating caspases in the cytochrome c/Apaf-1/caspase-9 pathway, and by opposing the inhibitory activity of inhibitor of apoptosis proteins (XIAP-BIR3). The protein assumes an elongated three-helix bundle structure, and forms a dimer in solution []. ; GO: 0006917 induction of apoptosis, 0006919 activation of caspase activity, 0005739 mitochondrion; PDB: 1XB0_I 1G73_B 3UIH_P 1XB1_H 3UIJ_Q 3D9U_B 1FEW_A 1TW6_D 1G3F_B.
Probab=22.86 E-value=7.7e+02 Score=27.02 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=38.1
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 760 KAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSM 830 (915)
Q Consensus 760 kAAkvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~ 830 (915)
-.+++++.+..+++.+|+..+.......+...+.+-....|...-.+..=++.|+.+|+.++....++++.
T Consensus 129 Ig~R~E~~dk~~e~~rlEs~w~sAv~L~e~AAEAAy~sGAdqASitar~~iQ~aqsQV~e~r~ls~~AE~k 199 (234)
T PF09057_consen 129 IGQRVEMNDKQQECLRLESTWMSAVNLSEMAAEAAYQSGADQASITARTRIQVAQSQVEEARQLSQKAEKK 199 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888887766555444333222111233344445555556666665555554444433
No 306
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=22.74 E-value=92 Score=22.54 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=4.5
Q ss_pred HHHHHHhcc
Q 002497 148 AVFIYFRSK 156 (915)
Q Consensus 148 ~~~~~rr~~ 156 (915)
+++++||||
T Consensus 15 ~~~~~rrrk 23 (26)
T TIGR02595 15 GFLLLRRRR 23 (26)
T ss_pred HHHHHhhcc
Confidence 444555554
No 307
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=22.70 E-value=1e+02 Score=26.68 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHH-hccCCCCC
Q 002497 147 AAVFIYF-RSKHRSSP 161 (915)
Q Consensus 147 ~~~~~~r-r~~~~~~~ 161 (915)
+++|||. |..|.-+.
T Consensus 19 l~~flWavksgQyDDl 34 (58)
T COG3197 19 LGAFLWAVKSGQYDDL 34 (58)
T ss_pred HHHHHHhcccCCcccc
Confidence 5566666 88887665
No 308
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=22.56 E-value=1.5e+02 Score=26.22 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhcc
Q 002497 143 LIAAAAVFIYFRSK 156 (915)
Q Consensus 143 ~~~~~~~~~~rr~~ 156 (915)
+++++++|+||.+|
T Consensus 52 il~~~~vW~~r~~~ 65 (65)
T PF09583_consen 52 ILAAVVVWFYRARK 65 (65)
T ss_pred HHHHHHHHHhhhcC
Confidence 45567888888654
No 309
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.52 E-value=1.4e+03 Score=29.51 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 801 KFSHSMNEFLKKAEQEIISIQSQESVALSMVKE 833 (915)
Q Consensus 801 ~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ke 833 (915)
+....+....++|++.+.+.+.+.+++.+.+++
T Consensus 563 ~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 563 EEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444444444443
No 310
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=22.50 E-value=67 Score=38.29 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=4.7
Q ss_pred ChHHHHHHH
Q 002497 600 GPAEKFLRA 608 (915)
Q Consensus 600 ~~aEqFl~~ 608 (915)
+.|.+|+..
T Consensus 455 TAAkeYl~~ 463 (465)
T PF01690_consen 455 TAAKEYLES 463 (465)
T ss_pred HHHHHHHHh
Confidence 455555544
No 311
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=22.50 E-value=1.5e+02 Score=24.76 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 126 RHVIILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 126 ~~~~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
..+.++++.+++++|+ +++.-+|..|-
T Consensus 12 ~flfl~v~l~PiLsV~-~Vg~YGF~vWm 38 (47)
T TIGR02972 12 ALGFIIVVLFPILSVA-GIGGYGFIIWM 38 (47)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445667889999999 88787777774
No 312
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=22.11 E-value=6.4e+02 Score=28.99 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=11.0
Q ss_pred hcCCHHHHHHHHHHHHHHHH
Q 002497 762 AAMDSDVLSSEVAKLAAGIT 781 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~ 781 (915)
..++++.|.+.++++-+.+.
T Consensus 48 ~~~s~Edlk~~~k~~~~k~~ 67 (339)
T PF12699_consen 48 VAVSLEDLKERAKEAGKKIK 67 (339)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 33466766666655544443
No 313
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.06 E-value=6.5e+02 Score=31.98 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002497 850 FRIFLVVKEFLSTLDQVCK 868 (915)
Q Consensus 850 ~~fF~~l~dFl~~~dka~k 868 (915)
.++|..|.|=.+.++.+..
T Consensus 618 ldLfsaLg~akrq~ei~~~ 636 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQG 636 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677776666666655443
No 314
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.03 E-value=8e+02 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVVK 788 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l~ 788 (915)
.-|++.+..++..|+..+...+..+.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655554
No 315
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.02 E-value=4.2e+02 Score=31.50 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKE 833 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ke 833 (915)
.+..-+.+...++.+|++++.++.+.+..
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444445555444444443333
No 316
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.97 E-value=9.8e+02 Score=27.33 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002497 766 SDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 766 le~L~sdv~kL~~gl~kv~~~l 787 (915)
++.+-.++.++++.+.++++.+
T Consensus 171 ~~~~l~~i~~l~~~~~~~r~~l 192 (316)
T PRK11085 171 YDEALSTLAELEDIGWKVRLCL 192 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555
No 317
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=21.94 E-value=7.4e+02 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQE 824 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~ 824 (915)
+-.|.+.|+.|.+.+.+.++..+...
T Consensus 25 e~DF~~~VKPf~d~vd~~l~~w~~~a 50 (111)
T PF08807_consen 25 EYDFYEEVKPFADEVDQLLEEWKEYA 50 (111)
T ss_dssp ---TTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhccchhHHHHHHHHHHHHHH
Confidence 56788888888888888777766544
No 318
>PHA03211 serine/threonine kinase US3; Provisional
Probab=21.94 E-value=97 Score=36.84 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhccccc
Q 002497 639 FETLQVACGELRKSRMFLKLLEAVLKTGNRMN 670 (915)
Q Consensus 639 l~~l~~AceeLr~S~~L~~lL~lVL~iGN~LN 670 (915)
+..|..|+..|.+.. |+.-=|+-.|+|=
T Consensus 266 ~~qi~~aL~yLH~~g----IvHrDLKP~NILl 293 (461)
T PHA03211 266 ARQLLSAIDYIHGEG----IIHRDIKTENVLV 293 (461)
T ss_pred HHHHHHHHHHHHHCC----EEECcCCHHHEEE
Confidence 344445555554322 2223344555543
No 319
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.92 E-value=1.5e+03 Score=27.74 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 762 AAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSM 830 (915)
Q Consensus 762 Akvdle~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~ 830 (915)
.+++++.+...+.++...|..+-..+...... ...-++-...+..|+.++++....|...+..+...
T Consensus 273 ~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A--~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 273 EELDLDEAEEKNEEIQERIDQLYDILEREVKA--RKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777777777777777766655433211 11122333455556666555555555544444333
No 320
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=21.85 E-value=4.9e+02 Score=30.11 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVKLN 790 (915)
Q Consensus 765 dle~L~sdv~kL~~gl~kv~~~l~~~ 790 (915)
|+|.|+.-|..|+.+|+.+...++..
T Consensus 258 DldTIsrLV~RL~deIE~~~~~v~fa 283 (336)
T PF05055_consen 258 DLDTISRLVDRLEDEIEHMKALVDFA 283 (336)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888887777654
No 321
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=21.82 E-value=8.5e+02 Score=31.25 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 002497 611 EIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLK 664 (915)
Q Consensus 611 ~IP~~~~RL~allf~~~F~~~~~~l~~~l~~l~~AceeLr~S~~L~~lL~lVL~ 664 (915)
.|-.++..|+-|.|+.-+.+.|..|...|......++...+ .+...|+..|.
T Consensus 190 Gi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~--~~~~~l~~~L~ 241 (743)
T PRK10872 190 GIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIE--EFVGHLRAEMK 241 (743)
T ss_pred ChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 34455667888888888888899998888877776666543 34455555553
No 322
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=21.81 E-value=1.3e+03 Score=26.71 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002497 812 KAEQEII 818 (915)
Q Consensus 812 ~Ae~ei~ 818 (915)
++.+++.
T Consensus 131 h~~qrV~ 137 (426)
T KOG2008|consen 131 HATQRVM 137 (426)
T ss_pred HHHHHHH
Confidence 3333333
No 323
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.80 E-value=9.4e+02 Score=30.97 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=35.1
Q ss_pred hCcccHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 002497 610 LEIPFAFKRVDAMLYIAN-FDSEVEYLKRSFETLQVACGELRKSRMFL 656 (915)
Q Consensus 610 ~~IP~~~~RL~allf~~~-F~~~~~~l~~~l~~l~~AceeLr~S~~L~ 656 (915)
.+...+..+|++|-|+.. ++..+.+++-.+.+...+++++...+.++
T Consensus 437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~ 484 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELM 484 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHH
Confidence 344566678888888754 78888888888888888888887766554
No 324
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.79 E-value=9.6e+02 Score=26.34 Aligned_cols=65 Identities=6% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHh
Q 002497 805 SMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~ 873 (915)
.+..+.....+.-..+...+..+.....++-..+.++.. +..+++..+..+...+.+...+++.+
T Consensus 217 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~----~l~~~l~~l~~~~~~l~~~~~~l~~~ 281 (291)
T TIGR00996 217 NLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRP----NLPQALANLAPVLTLLVDYHPELEQL 281 (291)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 333444333333333333333333444444445554322 12345555666666665555555543
No 325
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=21.74 E-value=68 Score=34.04 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002497 776 LAAGITKIMEVVKLN 790 (915)
Q Consensus 776 L~~gl~kv~~~l~~~ 790 (915)
|++++..|++.++..
T Consensus 79 LrRavedIrR~~klr 93 (190)
T PF09802_consen 79 LRRAVEDIRRIIKLR 93 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 326
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.62 E-value=7e+02 Score=31.49 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVG 871 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~ 871 (915)
+.+.++...++++|.....+|...+..+++...++|.-.|+-..-.+ .+.+.=+.|.+-+..+..+..+++
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr 116 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLR 116 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHH
Confidence 45667777889999999999999999999999999988886543211 112222245555555554444443
No 327
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=21.48 E-value=78 Score=33.23 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=5.9
Q ss_pred ccccccCCCCC
Q 002497 288 EEEEFFSPRGS 298 (915)
Q Consensus 288 ~~~ef~sp~~s 298 (915)
+..-||.=-|-
T Consensus 126 DQ~~FYe~lGY 136 (225)
T KOG3397|consen 126 DQCRFYESLGY 136 (225)
T ss_pred cchhhhhhhcc
Confidence 34458865443
No 328
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.47 E-value=8.2e+02 Score=26.42 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 002497 801 KFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 801 ~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r~~er 876 (915)
-..+.|..+++.....+. ..+.+....+++|..|....- ..+. -+.+|+..++.....+.+.++|
T Consensus 130 v~A~~~~~~l~~~~~~l~------~~~~~~q~~~Ae~iTEE~r~~-v~~~----ela~f~~evd~lr~~~~rL~~R 194 (204)
T COG3165 130 VAAQSVVRALRSGSRFLK------HGLKQLQRNLAEAITEEWRMA-VGPL----ELADFAEEVDALRDAVERLEAR 194 (204)
T ss_pred hHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcchhhcc-CChH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555543332 223455677888888776542 1222 2688999999998888888777
No 329
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=21.36 E-value=1.4e+03 Score=27.00 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=9.0
Q ss_pred CCccHHHHHHHH
Q 002497 697 GKTTLLHFVVQE 708 (915)
Q Consensus 697 ~k~TLLhyVVq~ 708 (915)
...||.|||-+.
T Consensus 111 ~~ktL~DFVd~~ 122 (412)
T PF04108_consen 111 EPKTLYDFVDED 122 (412)
T ss_pred CCCcHHHhcCHH
Confidence 345999999754
No 330
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.29 E-value=78 Score=32.12 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 002497 129 IILAISLSF 137 (915)
Q Consensus 129 ~~~ai~~~~ 137 (915)
|+|||+++|
T Consensus 34 ILiaIvVli 42 (189)
T PF05568_consen 34 ILIAIVVLI 42 (189)
T ss_pred HHHHHHHHH
Confidence 444444443
No 331
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=21.28 E-value=5.5e+02 Score=26.30 Aligned_cols=65 Identities=22% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002497 767 DVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFH 839 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YFG 839 (915)
+.+..++.+|...+..|+.-++.. .+.-|..+.|--.+++= -+..|.+..+++...+.++..||.
T Consensus 16 ~~vk~ei~~l~e~~~~vk~WI~l~--IPkiEDGNNFGV~VQee------vl~~l~~v~~~a~~~~~~i~~Y~~ 80 (150)
T PF02252_consen 16 QKVKPEIRELIEKCNTVKMWIQLL--IPKIEDGNNFGVSVQEE------VLEELRAVESKAENFLDQISKYFS 80 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------SS--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CcccccCCcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888877766543 12223344554444311 122233333444445555555554
No 332
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=21.23 E-value=1.2e+03 Score=26.38 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccCchhhHHHHHHHHHHHHHHHH
Q 002497 813 AEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCK 868 (915)
Q Consensus 813 Ae~ei~~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF~~l~dFl~~~dka~k 868 (915)
++.+++.+++++..+.+.--.+|.=+-+++ ++.+.+..|..|-..|-+.|.
T Consensus 227 ~r~~lE~aEDeFv~aTeeAv~~Mk~vl~~~-----e~l~~Lk~lv~AQl~Yhk~aa 277 (289)
T PF10455_consen 227 LRVELEQAEDEFVSATEEAVEVMKEVLDNS-----EPLRLLKELVKAQLEYHKKAA 277 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHH
Confidence 345566666666655555555555554433 234555555556556655543
No 333
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.22 E-value=4.2e+02 Score=33.24 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=3.4
Q ss_pred HHhhccC
Q 002497 834 ITEYFHG 840 (915)
Q Consensus 834 l~~YFGE 840 (915)
+..||-.
T Consensus 610 l~~yFd~ 616 (656)
T PRK06975 610 LARYFDT 616 (656)
T ss_pred HHHHhCC
Confidence 3456643
No 334
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=21.17 E-value=8.7e+02 Score=32.76 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=8.9
Q ss_pred cchHHHHHHHHHHHHH
Q 002497 125 HRHVIILAISLSFLSA 140 (915)
Q Consensus 125 ~~~~~~~ai~~~~~~~ 140 (915)
+.-++=||-++.|=||
T Consensus 1302 sn~l~ei~~vlgIea~ 1317 (1605)
T KOG0260|consen 1302 SNDLVEIAEVLGIEAV 1317 (1605)
T ss_pred ccchhhhhhhhcHHHH
Confidence 4455666655555544
No 335
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=21.16 E-value=1.2e+03 Score=26.18 Aligned_cols=96 Identities=11% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCCccccCc
Q 002497 771 SEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEIT-EYFHGNSAKEEAHP 849 (915)
Q Consensus 771 sdv~kL~~gl~kv~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~-~YFGEd~~k~e~~p 849 (915)
+-+-.|...|..++..|......+..+......++. .-+..-.++-+.|++.+++=...+.+++ .|+-
T Consensus 154 ~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~-~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~---------- 222 (264)
T PF08687_consen 154 NLLLSLSGRLARVENALSSLDEDADPEERESLLEKR-RLLQRQLEDAKELKENLDRRERVVSEILARYLS---------- 222 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC----------
Confidence 345556666666666665433211111111111111 1122222333556666665556665555 4543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002497 850 FRIFLVVKEFLSTLDQVCKEVGRINERT 877 (915)
Q Consensus 850 ~~fF~~l~dFl~~~dka~kE~~r~~er~ 877 (915)
.+=|.....|+++.-+...|-+.+.+|.
T Consensus 223 ~eq~~dy~~fv~mKa~Ll~eqreLddki 250 (264)
T PF08687_consen 223 EEQLADYRHFVKMKAALLIEQRELDDKI 250 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2346667889999988888888887774
No 336
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.91 E-value=9.7e+02 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002497 800 RKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYF 838 (915)
Q Consensus 800 d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~kel~~YF 838 (915)
..|.+.|++++.-+..- +.+-+.-....-.|..+.+|.
T Consensus 86 ~~f~~~Lkd~~~y~~s~-k~~lk~R~~kq~d~e~l~e~l 123 (185)
T cd07628 86 ENYLTSLKDLLHYILSL-KNLIKLRDQKQLDYEELSDYL 123 (185)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHH
Confidence 45666666655554332 222222233344455555555
No 337
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=20.64 E-value=6.8e+02 Score=28.22 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=8.6
Q ss_pred CCCccee--eecccccCC
Q 002497 201 STSSEFL--YLGTLVNSR 216 (915)
Q Consensus 201 ~~ssefl--ylgt~~~~~ 216 (915)
|-+-||| |=||=+|..
T Consensus 190 sdmgeffmp~pg~rinq~ 207 (297)
T PF07174_consen 190 SDMGEFFMPYPGTRINQE 207 (297)
T ss_pred ccccceeccCCCcccccc
Confidence 3455555 555555554
No 338
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.64 E-value=77 Score=38.68 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 002497 146 AAAVFIYF 153 (915)
Q Consensus 146 ~~~~~~~r 153 (915)
++++++|+
T Consensus 538 ~~G~~~~~ 545 (552)
T TIGR03521 538 LFGLSFTY 545 (552)
T ss_pred HHHHHHHH
Confidence 34444443
No 339
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=20.53 E-value=1.8e+03 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q 002497 636 KRSFETLQVACGELRKSRMFLKLLEAVLK 664 (915)
Q Consensus 636 ~~~l~~l~~AceeLr~S~~L~~lL~lVL~ 664 (915)
...++-+...|+++.+..-|..+..++..
T Consensus 504 ~n~VNyvervl~ews~nv~fl~l~~a~~d 532 (737)
T KOG2218|consen 504 LNSVNYVERVLKEWSSNVVFLDLADAVED 532 (737)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHhhc
Confidence 34455666777777777777777777776
No 340
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=20.49 E-value=1.7e+03 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=18.0
Q ss_pred CCCChHHHHHHHHhCcccHHHHHHHH
Q 002497 597 FKLGPAEKFLRAVLEIPFAFKRVDAM 622 (915)
Q Consensus 597 s~L~~aEqFl~~l~~IP~~~~RL~al 622 (915)
.+|....+-|..+.++|.|..|-.-|
T Consensus 151 ~~l~~m~~sL~~l~~~pd~~~r~~~l 176 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPDYEERRQQL 176 (766)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 35666677777778888888765444
No 341
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.43 E-value=8e+02 Score=25.77 Aligned_cols=25 Identities=8% Similarity=0.227 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 002497 763 AMDSDVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 763 kvdle~L~sdv~kL~~gl~kv~~~l 787 (915)
++|-......+++.++.|+.++..|
T Consensus 41 ~~Dph~~~~~L~~ae~~Ln~vQ~~L 65 (169)
T PF09869_consen 41 KLDPHASFKELKDAEKELNSVQSIL 65 (169)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4455555566777778888887665
No 342
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.43 E-value=7.3e+02 Score=25.60 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCccccCchhhH-HHHHHHHHHHHHHHHHHHH
Q 002497 819 SIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIF-LVVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 819 ~Lq~~~~~~~~~~kel~~YFGEd~~k~e~~p~~fF-~~l~dFl~~~dka~kE~~r 872 (915)
.|+..+..+......+++-++++..+.......+| ..+.+|+..+.++.++++.
T Consensus 96 ~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~ 150 (155)
T PF07464_consen 96 KLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHE 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555332222234455 3344555555555555544
No 343
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=20.42 E-value=1.6e+03 Score=28.09 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=21.1
Q ss_pred hhhhhhhHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 751 LSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKL 789 (915)
Q Consensus 751 ls~EL~~V~kAAkvdle~L~sdv~kL~~gl~kv~~~l~~ 789 (915)
|.+++..|.+ .++.|.++|.+|...+..+...++.
T Consensus 36 ~L~~f~~v~~----~l~~~~~~v~~l~~~~~~~~~~l~~ 70 (618)
T PF06419_consen 36 FLKEFSPVNR----QLKRLQSDVDKLNSSCDQMQDRLSA 70 (618)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444545544 2566677777777777777666654
No 344
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.41 E-value=1e+03 Score=29.41 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCCCc
Q 002497 805 SMNEFLKKAEQEIISIQSQESVA----LSMVKEITEYFHGNSAK 844 (915)
Q Consensus 805 ~M~~Fl~~Ae~ei~~Lq~~~~~~----~~~~kel~~YFGEd~~k 844 (915)
.++.|-++.+...+.++.+++++ .+.|++|...|+.+...
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc
Confidence 34444445555555555555555 34578888899876543
No 345
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=20.38 E-value=1.1e+03 Score=25.56 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 799 SRKFSHSMNEFLKKAEQEIISIQSQESVALSMV 831 (915)
Q Consensus 799 ~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~ 831 (915)
...|...|+.||++--.-.+.+-..++++...|
T Consensus 175 ~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~y 207 (210)
T cd07668 175 IYDYNSVIRLYLEQQVQFYETIAEKLRQALSRF 207 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777888887765555555555555444444
No 346
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.35 E-value=1.4e+02 Score=28.58 Aligned_cols=29 Identities=0% Similarity=-0.090 Sum_probs=13.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 123 SAHRHVIILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 123 ~~~~~~~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
+.+++-.+..|.|+++|| +++|++++..+
T Consensus 11 ~~~g~sW~~LVGVv~~al--~~SlLIalaaK 39 (102)
T PF15176_consen 11 GEGGRSWPFLVGVVVTAL--VTSLLIALAAK 39 (102)
T ss_pred CCCCcccHhHHHHHHHHH--HHHHHHHHHHH
Confidence 334443344444333332 55566666655
No 347
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=20.29 E-value=6.1e+02 Score=25.60 Aligned_cols=19 Identities=11% Similarity=-0.061 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 002497 824 ESVALSMVKEITEYFHGNS 842 (915)
Q Consensus 824 ~~~~~~~~kel~~YFGEd~ 842 (915)
..+..+.|++++.-||-+.
T Consensus 54 r~~kl~~~r~~m~~~Gis~ 72 (135)
T PRK10947 54 RTRKLQQYREMLIADGIDP 72 (135)
T ss_pred HHHHHHHHHHHHHHcCCCH
Confidence 3445678889999998654
No 348
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=20.19 E-value=1.8e+02 Score=23.70 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002497 127 HVIILAISLSFLSAAVLIAAAAVFIYF 153 (915)
Q Consensus 127 ~~~~~ai~~~~~~~~~~~~~~~~~~~r 153 (915)
.+..+++.+++++|+ +++.-+|..|-
T Consensus 8 flfl~~~l~PiLsV~-~V~~YGF~vWm 33 (42)
T TIGR02973 8 FLFLAAVIWPVLSVI-TVGGYGFAVWM 33 (42)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 445667889999999 88787777774
No 349
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=20.18 E-value=1.1e+03 Score=25.36 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccC--CCCccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 002497 804 HSMNEFLKKAEQEIISIQ----SQESVALSMVKEITEYFHG--NSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 804 ~~M~~Fl~~Ae~ei~~Lq----~~~~~~~~~~kel~~YFGE--d~~k~e~~p~~fF~~l~dFl~~~dka~kE~~r 872 (915)
.+|-.++.+.+..+.+-+ +.......++.++-+|||- |+.+ .+|=..|.+--..=+++.||.++
T Consensus 142 ~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd-----~RF~emLqqkEkeekK~~KeaKr 211 (225)
T KOG4848|consen 142 KKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRD-----PRFEEMLQQKEKEEKKAVKEAKR 211 (225)
T ss_pred HHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544443332 3334446678899999995 3332 23333344444444455555443
No 350
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.18 E-value=5.2e+02 Score=31.52 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002497 767 DVLSSEVAKLAAGITKIMEVV 787 (915)
Q Consensus 767 e~L~sdv~kL~~gl~kv~~~l 787 (915)
..+.=++-.|++.+.++++.+
T Consensus 120 r~v~YeIP~lkKqi~k~~q~~ 140 (507)
T PF05600_consen 120 RNVNYEIPALKKQIAKCQQQL 140 (507)
T ss_pred HHhcccchHHHHHHHHHHHHH
Confidence 333334445555555544433
No 351
>PF04523 Herpes_U30: Herpes virus tegument protein U30; InterPro: IPR007611 This family is named after the human herpesvirus protein, but has been characterised in cytomegalovirus as UL47. Cytomegalovirus UL47 is a component of the tegument, which is a protein layer surrounding the viral capsid. UL47 co-precipitates with UL48 and UL69 tegument proteins, and the major capsid protein UL86. A UL47-containing complex is thought to be involved in the release of viral DNA from the disassembling virus particle [].; GO: 0019068 virion assembly
Probab=20.14 E-value=1.7e+03 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc----hhHHHHHHHHHHhccccccCCCCCceeeeecccccccccccc
Q 002497 633 EYLKRSFETLQVACGELRKS----RMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKG 694 (915)
Q Consensus 633 ~~l~~~l~~l~~AceeLr~S----~~L~~lL~lVL~iGN~LN~gt~rG~A~GFkLsSL~KL~dvKs 694 (915)
..|+..|..+..-.-+|.+- ..|+.||.+++.+=..+|.-. |...-|..+-|..|.-..-
T Consensus 573 ~~lrrpL~llY~~~~~I~~~d~~~g~f~~ild~~~ei~~~i~~~~--~p~~~~p~~Ll~~Lf~~~~ 636 (887)
T PF04523_consen 573 QRLRRPLVLLYFLTTDISQGDLSMGAFKNILDYTQEIFTIISELV--GPPASPPTDLLQELFALSY 636 (887)
T ss_pred HHHHhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHH
Confidence 34444455555444444432 458888888887777777643 3445666666666654443
No 352
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=20.14 E-value=1.2e+03 Score=25.82 Aligned_cols=19 Identities=11% Similarity=0.343 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002497 631 EVEYLKRSFETLQVACGEL 649 (915)
Q Consensus 631 ~~~~l~~~l~~l~~AceeL 649 (915)
.+.+|...++.+..+++.|
T Consensus 16 ~~~~le~r~D~~k~~~~~i 34 (246)
T cd07618 16 DLLQIERRLDTVRSVSHNV 34 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555444443
Done!