Query 002497
Match_columns 915
No_of_seqs 256 out of 1083
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 17:08:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002497.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1215-1219//hhsearch_pdb/002497hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 1.0 1 1 622.1 40.7 377 459-872 6-397 (483)
2 3obv_E Protein diaphanous homo 1.0 1 1 612.9 36.9 377 460-873 2-386 (457)
3 4eah_A Formin-like protein 3, 1.0 1 1 603.4 36.8 372 459-876 10-386 (402)
4 1ux5_A BNI1 protein; structura 1.0 1 1 579.7 24.7 372 461-876 2-404 (411)
5 1v9d_A Diaphanous protein homo 1.0 1 1 540.6 30.9 314 525-875 4-317 (340)
6 2z73_A Rhodopsin; visual pigme 1.0 1 1 38.0 0.0 67 371-437 379-445 (448)
7 2ks1_B Epidermal growth factor 1.0 1 1 32.5 3.6 29 129-158 13-41 (44)
8 2l2t_A Receptor tyrosine-prote 1.0 1 1 31.9 4.6 30 129-159 12-41 (44)
9 3iot_A Maltose-binding protein 1.0 1 1 30.3 0.0 27 397-423 404-430 (449)
10 3h0g_A DNA-directed RNA polyme 1.0 1 1 30.2 0.0 123 314-449 1623-1746(1752)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=1.00 E-value=1 Score=622.07 Aligned_cols=377 Identities=25% Similarity=0.414 Sum_probs=338.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC--CCCHHHHHHHHHHCCCCCC--------CCCCC--CC-CCCCC
Q ss_conf 888999888654211003336777740012466644--5699999998600278878--------87667--76-44567
Q 002497 459 KSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSF--QLNEEMIETLFTVNNSNLN--------SKDNG--RK-QVLSV 525 (915)
Q Consensus 459 ~~~~~Pk~KLK~LhWdKI~~~~~k~TIW~~i~~~~~--~ld~e~lE~lF~~k~~~~~--------~K~~~--kk-qv~~~ 525 (915)
+....|+.+||+|||+||...++++|||+++++..+ ++|+++||++|+++..... .++.+ .. ....+
T Consensus 6 K~~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~k 85 (483)
T 2j1d_G 6 KSIPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKL 85 (483)
T ss_dssp CCCCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC---------------------------
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999988969348981012598667587312114469999999985120334333444332333466432222235
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 998642138144667999886259998999999823899-9989799999996099959999998410369999993889
Q 002497 526 PNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNS-DTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEK 604 (915)
Q Consensus 526 ~~kevsILD~KRaqNIaI~L~klkls~eeI~~AIl~~D~-~~L~~e~Le~Llk~~Pt~EE~~~Lke~~~d~pskL~~aEq 604 (915)
+.++++|||+||+|||+|+|++|+++.++|++||++||. +.|+.|.|+.|++++||+||+..|++|.+|. ..|+.+||
T Consensus 86 k~~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~-~~L~~aEq 164 (483)
T 2j1d_G 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHEL-DRMAKADR 164 (483)
T ss_dssp --CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCG-GGBCHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHCCHHHH
T ss_conf 77743227778898999998437989899999998168524589999999998499979999998725682-31488999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 99998382258979999999997599999999989999999999983166999999999714423457998732345124
Q 002497 605 FLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLD 684 (915)
Q Consensus 605 FL~~L~~IP~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~Gt~rG~A~GFkLs 684 (915)
||++|+.||+|+.||+||+|+.+|++.+.+|+..+.+|..||++|++|++|++||++||++|||||+| .||+|+||+|+
T Consensus 165 Fl~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~ 243 (483)
T 2j1d_G 165 FLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKIS 243 (483)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGG
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCCCCEEEEHH
T ss_conf 99999577648888999999999999999999999999999999983568999999999986553368-77773235168
Q ss_pred CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHC
Q ss_conf 41121223369-99800899999999997237778999998531122687500489987120133000133466797414
Q 002497 685 TLLKLVDVKGA-DGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAA 763 (915)
Q Consensus 685 SL~KL~dvKs~-D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~ls~EL~~V~kAAk 763 (915)
+|.||.|||++ |+++|||||||+.|.+. +++ +.+|.+||.+|.+|++
T Consensus 244 sL~KL~d~Ks~~d~k~TLLhylv~~v~~~---------------------~p~-----------l~~f~~eL~~v~~Ask 291 (483)
T 2j1d_G 244 SLNKIADTKSSIDKNITLLHYLITIVENK---------------------YPS-----------VLNLNEELRDIPQAAK 291 (483)
T ss_dssp GGGGGGGSBCSSCTTCBHHHHHHHHHHHH---------------------CGG-----------GGGHHHHTTTHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHH---------------------CCH-----------HHCHHHHHHHHHHHHC
T ss_conf 99865202057899864999999999974---------------------830-----------6222777761888732
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 89899999999999999999999998777654211135568899999999999999999999999999999965069987
Q 002497 764 MDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSA 843 (915)
Q Consensus 764 id~e~L~sdv~kL~~~l~ki~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k~l~~YFGEdp~ 843 (915)
|++++|.+++.+|++++++++.+++..... ..+..|.|..+|..|+..|+.++..|+.++.++.+.|++++.|||||++
T Consensus 292 v~~~~l~~~~~~L~~~l~~v~~~l~~~~~~-~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~ 370 (483)
T 2j1d_G 292 VNMTELDKEISTLRSGLKAVETELEYQKSQ-PPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAG 370 (483)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999999999999999999986526-8872005899999999999999999999999999999999999398978
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66468111679999999999999999998
Q 002497 844 KEEAHPFRIFLVVKEFLSTLDQVCKEVGR 872 (915)
Q Consensus 844 k~ea~p~~fF~~l~dFl~~ldka~kEv~k 872 (915)
+. .+.+||++|.+|+..|++|++||.+
T Consensus 371 ~~--~~~~fF~~~~~F~~~f~~A~~en~~ 397 (483)
T 2j1d_G 371 KI--QPDEFFGIFDQFLQAVSEAKQENEN 397 (483)
T ss_dssp SC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78--8999999999999999999999999
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=1.00 E-value=1 Score=612.93 Aligned_cols=377 Identities=28% Similarity=0.410 Sum_probs=338.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCEECCCCCCCCC--CCHHHHHHHHHHCCCCCCCCC---CC--CCCCCCCCCCCCC
Q ss_conf 8899988865421100333677-77400124666445--699999998600278878876---67--7644567998642
Q 002497 460 SEETPRPKLKPLHWDKVRASSD-RAMVWDQFKSGSFQ--LNEEMIETLFTVNNSNLNSKD---NG--RKQVLSVPNQENR 531 (915)
Q Consensus 460 ~~~~Pk~KLK~LhWdKI~~~~~-k~TIW~~i~~~~~~--ld~e~lE~lF~~k~~~~~~K~---~~--kkqv~~~~~kevs 531 (915)
....|+.+||+|||++|...++ ++|||+.+++..+. .+++.||.+|+++....++++ .+ ++....++.++++
T Consensus 2 k~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~ 81 (457)
T 3obv_E 2 KVYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELK 81 (457)
T ss_dssp CCCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCS
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 98999999708875357865567885000076211367458999998854565543455554445332111236786357
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 13814466799988625999899999982389999897999999960999599999984103699999938899999838
Q 002497 532 VLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEKFLRAVLE 611 (915)
Q Consensus 532 ILD~KRaqNIaI~L~klkls~eeI~~AIl~~D~~~L~~e~Le~Llk~~Pt~EE~~~Lke~~~d~pskL~~aEqFL~~L~~ 611 (915)
|||+||+|||+|+|++|+++.++|++||++||.+.|+.|.|+.|++++||.||+..|++|.++. ..|+.+|||+++|+.
T Consensus 82 lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~-~~L~~~EqF~~~l~~ 160 (457)
T 3obv_E 82 VLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY-DDLAESEQFGVVMGT 160 (457)
T ss_dssp SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSG-GGSCHHHHHHHHHTS
T ss_pred ECCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHCCHHHHHHHHHHC
T ss_conf 5677788689999833698999999999938835479999999998697989999999824672-005879999999976
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 22589799999999975999999999899999999999831669999999997144234579987323451244112122
Q 002497 612 IPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVD 691 (915)
Q Consensus 612 IP~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~Gt~rG~A~GFkLsSL~KL~d 691 (915)
||+|..||+||+|+.+|++.+.+|+..+.+|..||++|++|+.|++||++||++|||||+|+.+|+|+||+|++|.||.|
T Consensus 161 Ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d 240 (457)
T 3obv_E 161 VPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRD 240 (457)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH
T ss_conf 56489999999999988999999999999999999998706779999999999742501688677743573378887775
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 33699980089999999999723777899999853112268750048998712013300013346679741489899999
Q 002497 692 VKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSS 771 (915)
Q Consensus 692 vKs~D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~ls~EL~~V~kAAkid~e~L~s 771 (915)
||++|+++|||||||+.+.+. +++ +.+|.+||.+|.+|++|++++|..
T Consensus 241 ~Ks~d~k~TLLh~l~~~v~~~---------------------~p~-----------l~~f~~eL~~v~~Aakvs~~~l~~ 288 (457)
T 3obv_E 241 TKSADQKMTLLHFLAELCEND---------------------HPE-----------VLKFPDELAHVEKASRVSAENLQK 288 (457)
T ss_dssp CBCSSTTCBHHHHHHHHHHHH---------------------CGG-----------GGGHHHHCTTHHHHTTCCHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHC---------------------CCC-----------CCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 006788841899999999970---------------------830-----------137722424377651279999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99999999999999999877765421113556889999999999999999999999999999996506998766468111
Q 002497 772 EVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFR 851 (915)
Q Consensus 772 dv~kL~~~l~ki~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k~l~~YFGEdp~k~ea~p~~ 851 (915)
++.+|+++++.++..++... ...+..|.|..+|..|+..|+.++..|+..++.|++.|++++.|||||+++. .+.+
T Consensus 289 dl~~L~~~l~~v~~~l~~~~--~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~--~~~e 364 (457)
T 3obv_E 289 SLDQMKKQIADVERDVQNFP--AATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKL--SVEE 364 (457)
T ss_dssp HHHHHHHHHHHHHHHHHSCC--CCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTS--CHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CHHH
T ss_conf 99999999999999998445--7734147799999999999999999999999999999999999857797879--9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6799999999999999999986
Q 002497 852 IFLVVKEFLSTLDQVCKEVGRI 873 (915)
Q Consensus 852 fF~~l~dFl~~ldka~kEv~k~ 873 (915)
||++|.+|+.+|++|++||.+.
T Consensus 365 FF~~~~~F~~~fkkA~~eN~~r 386 (457)
T 3obv_E 365 FFMDLHNFRNMFLQAVKENQKR 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=1.00 E-value=1 Score=603.41 Aligned_cols=372 Identities=21% Similarity=0.388 Sum_probs=332.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC--CCCHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCH
Q ss_conf 888999888654211003336777740012466644--56999999986002788788766-776445679986421381
Q 002497 459 KSEETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSF--QLNEEMIETLFTVNNSNLNSKDN-GRKQVLSVPNQENRVLDP 535 (915)
Q Consensus 459 ~~~~~Pk~KLK~LhWdKI~~~~~k~TIW~~i~~~~~--~ld~e~lE~lF~~k~~~~~~K~~-~kkqv~~~~~kevsILD~ 535 (915)
+..+.|+.|||+|||++|...++++|||+.+++..+ ++|+++||++|+++......... .++.+..++.++++|||+
T Consensus 10 Kk~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~ 89 (402)
T 4eah_A 10 KKPIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEA 89 (402)
T ss_dssp CCCCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCH
T ss_pred CCCCCCCCCCCCCCCEECCHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCEEECCH
T ss_conf 99999887777868545976753586055776034304568999999974124677655200002333468871255777
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHCCC
Q ss_conf 446679998862599989999998238999989799999996099959999998410369--999993889999983822
Q 002497 536 KKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDES--PFKLGPAEKFLRAVLEIP 613 (915)
Q Consensus 536 KRaqNIaI~L~klkls~eeI~~AIl~~D~~~L~~e~Le~Llk~~Pt~EE~~~Lke~~~d~--pskL~~aEqFL~~L~~IP 613 (915)
||+|||+|+|++|+++.++|++||++||.+.|+.|.|+.|++++||+||+..|++|.++. ...|+++|||+++|+.||
T Consensus 90 kra~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip 169 (402)
T 4eah_A 90 NRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVE 169 (402)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCC
T ss_conf 89989999986379899999999980883448999999998609897999999986435786444167999999997356
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 58979999999997599999999989999999999983166999999999714423457998732345124411212233
Q 002497 614 FAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVK 693 (915)
Q Consensus 614 ~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~Gt~rG~A~GFkLsSL~KL~dvK 693 (915)
+|..||+||+|+.+|++.+.+|+..+.+|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|||
T Consensus 170 ~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~K 248 (402)
T 4eah_A 170 RLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTK 248 (402)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-CCCCCCEEEHHHHHHHHHCC
T ss_conf 39999999999999999999999999999999999871488999999999874132678-77762324178888888445
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 69998008999999999972377789999985311226875004899871201330001334667974148989999999
Q 002497 694 GADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAMDSDVLSSEV 773 (915)
Q Consensus 694 s~D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~ls~EL~~V~kAAkid~e~L~sdv 773 (915)
++|+++|||||||+.+.+. +++ +.+|.+||.+|.+|++|++++|.+|+
T Consensus 249 s~d~k~TLLh~l~~~~~~~---------------------~p~-----------l~~f~~eL~~v~~Aa~v~~~~l~~d~ 296 (402)
T 4eah_A 249 STDRKMTLLHFIALTVKEK---------------------YPE-----------LANFWQELHFVEKAAAVSLENVLLDV 296 (402)
T ss_dssp CTTSSSBHHHHHHHHHHHH---------------------CGG-----------GGTCSTTCCSHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH---------------------HHH-----------HHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 7889862999999999963---------------------089-----------98776655339989649999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99999999999999987776542111355688999999999999999999999999999999650699876646811167
Q 002497 774 AKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAKEEAHPFRIF 853 (915)
Q Consensus 774 ~kL~~~l~ki~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k~l~~YFGEdp~k~ea~p~~fF 853 (915)
.+|+++++.++.++... + ..+|..|++.|+.++..|+..++++++.|++++.|||||+++ ..+.+||
T Consensus 297 ~~L~~~l~~~~~e~~~~---------d--~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~--~~~~~fF 363 (402)
T 4eah_A 297 KELGRGMELIRRECSIH---------D--NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT--TPPSVFF 363 (402)
T ss_dssp HHHHHHHHHHHHHHHTT---------C--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--CCHHHHH
T ss_pred HHHHHHHHHHHHHHCCC---------C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHH
T ss_conf 99999999999985303---------2--489999999999999999999999999999999994889787--9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999986431
Q 002497 854 LVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 854 ~~l~dFl~~ldka~kEv~k~~er 876 (915)
++|.+|+..|++|++||.+..++
T Consensus 364 ~~~~~F~~~fk~A~~en~~r~~~ 386 (402)
T 4eah_A 364 PVFVRFIRSYKEAEQENEARKKQ 386 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=1.00 E-value=1 Score=579.70 Aligned_cols=372 Identities=19% Similarity=0.283 Sum_probs=320.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC--CC----CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999888654211003336777740012466644--56----99999998600278878876677644567998642138
Q 002497 461 EETPRPKLKPLHWDKVRASSDRAMVWDQFKSGSF--QL----NEEMIETLFTVNNSNLNSKDNGRKQVLSVPNQENRVLD 534 (915)
Q Consensus 461 ~~~Pk~KLK~LhWdKI~~~~~k~TIW~~i~~~~~--~l----d~e~lE~lF~~k~~~~~~K~~~kkqv~~~~~kevsILD 534 (915)
...|+.|||+|||+||.. .++|||+++++.++ ++ |+++||++|+++..... .+++ .++.++++|||
T Consensus 2 ~p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~---~~~k---~~~~~~v~lLd 73 (411)
T 1ux5_A 2 YPRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL---ASKR---KEDLQKITFLS 73 (411)
T ss_dssp CCCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH---HHHH---HHTTTSBCCSC
T ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCC---CCCC---CCCCCEEEECC
T ss_conf 999999988868415999--999907677617778765110229999998434656543---4466---67777025247
Q ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHCCCCCCCCHHH-HHH------------HH-HHCCCHHHHHH------HHHHCC
Q ss_conf 14466799988625-99989999998238999989799-999------------99-60999599999------984103
Q 002497 535 PKKSQNIAILLRAL-NVTVDEVCEGLLEGNSDTLGAEL-LES------------LL-KMAPTKEEERK------IKEFKD 593 (915)
Q Consensus 535 ~KRaqNIaI~L~kl-kls~eeI~~AIl~~D~~~L~~e~-Le~------------Ll-k~~Pt~EE~~~------Lke~~~ 593 (915)
+||+|||+|+|++| +++.++|++||++||.+.|+.+. |+. |+ +++|+.+|++. ++.|.+
T Consensus 74 ~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~ 153 (411)
T 1ux5_A 74 RDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEK 153 (411)
T ss_dssp HHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSS
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 67899898998741798999999999805965369789998702367776678999853899446788877887653369
Q ss_pred CCCCCCCHHHHHHHHHH-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCC
Q ss_conf 69999993889999983-822-5897999999999759999999998999999999998316699999999971442345
Q 002497 594 ESPFKLGPAEKFLRAVL-EIP-FAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNV 671 (915)
Q Consensus 594 d~pskL~~aEqFL~~L~-~IP-~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~ 671 (915)
+ +..|+++|||+++++ .|+ ++..||+||+|+.+|++.+.+|+..+.+|..||++|++|++|++||++||++|||||+
T Consensus 154 d-~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~ 232 (411)
T 1ux5_A 154 D-PNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMND 232 (411)
T ss_dssp C-STTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSC
T ss_pred C-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
T ss_conf 9-566788889999999850266999999999999889999999999999999999998465899999999998380248
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCH
Q ss_conf 79987323451244112122336999800899999999997237778999998531122687500489987120133000
Q 002497 672 GTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSL 751 (915)
Q Consensus 672 Gt~rG~A~GFkLsSL~KL~dvKs~D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~l 751 (915)
|+. +|+||+|++|.||.|||++|+++|||||||+.+ +. ++++ +.+|
T Consensus 233 g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v-~~--------------------~~p~-----------l~~f 278 (411)
T 1ux5_A 233 TSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIV-RL--------------------NYPS-----------FNDF 278 (411)
T ss_dssp GGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHH-HH--------------------HCGG-----------GGGH
T ss_pred CCC--CEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHH-HH--------------------HCCC-----------CCCC
T ss_conf 998--805762468888887008889856999999999-98--------------------6920-----------2154
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1334667974148989999999999999999999999877765--42111355688999999999999999999999999
Q 002497 752 SGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIA--MKESSRKFSHSMNEFLKKAEQEIISIQSQESVALS 829 (915)
Q Consensus 752 s~EL~~V~kAAkid~e~L~sdv~kL~~~l~ki~~~l~~~~~~~--~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~ 829 (915)
.+||.+|.+|++|++++|.+++.+|.+++++++.+++...... ..+..++|...|..|+..|+.++..|+..++.+++
T Consensus 279 ~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~ 358 (411)
T 1ux5_A 279 LSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIM 358 (411)
T ss_dssp HHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00354499997789999999999999999999999983257752235852378999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999965069987664681116799999999999999999986431
Q 002497 830 MVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINER 876 (915)
Q Consensus 830 ~~k~l~~YFGEdp~k~ea~p~~fF~~l~dFl~~ldka~kEv~k~~er 876 (915)
.|++++.|||||+++ ...+.+||++|.+|+..|++|++||.+..|.
T Consensus 359 ~~~~l~~yfged~~~-~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~ 404 (411)
T 1ux5_A 359 EFESLMHTYGEDSGD-KFAKISFFKKFADFINEYKKAQAQNLAAEEE 404 (411)
T ss_dssp HHHHHHHHTTCCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999994889878-7898999999999999999999999999999
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=1.00 E-value=1 Score=540.61 Aligned_cols=314 Identities=29% Similarity=0.425 Sum_probs=291.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 79986421381446679998862599989999998238999989799999996099959999998410369999993889
Q 002497 525 VPNQENRVLDPKKSQNIAILLRALNVTVDEVCEGLLEGNSDTLGAELLESLLKMAPTKEEERKIKEFKDESPFKLGPAEK 604 (915)
Q Consensus 525 ~~~kevsILD~KRaqNIaI~L~klkls~eeI~~AIl~~D~~~L~~e~Le~Llk~~Pt~EE~~~Lke~~~d~pskL~~aEq 604 (915)
++.++++|||+||+|||+|+|++|+++.++|++||++||.+.|+.|.|+.|++++||+||+..|++|.++. ..|+.+||
T Consensus 4 kk~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~-~~L~~~Eq 82 (340)
T 1v9d_A 4 KKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY-DDLAESEQ 82 (340)
T ss_dssp --CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGG-GGSCHHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCH-HHCCHHHH
T ss_conf 77780155477888589999800697999999999958820099999999970499989999999821884-22688989
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
Q ss_conf 99998382258979999999997599999999989999999999983166999999999714423457998732345124
Q 002497 605 FLRAVLEIPFAFKRVDAMLYIANFDSEVEYLKRSFETLQVACGELRKSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLD 684 (915)
Q Consensus 605 FL~~L~~IP~~~~RL~allf~~~Fe~~v~~L~~~l~tl~~AceeLr~S~~L~~lLelILaiGN~LN~Gt~rG~A~GFkLs 684 (915)
|+++|+.||++..||+||+|+.+|++.+.+|+..+.+|..||++|++|++|++||++||++|||||+|+++|+|+||+|+
T Consensus 83 F~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~ 162 (340)
T 1v9d_A 83 FGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNIS 162 (340)
T ss_dssp HHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------C
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
T ss_conf 99999778977999999999966899999999999999999999984858999999999975857888887763343148
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCHHHHHHHHHHHHCC
Q ss_conf 41121223369998008999999999972377789999985311226875004899871201330001334667974148
Q 002497 685 TLLKLVDVKGADGKTTLLHFVVQEIIRAEGSRLSGANPDTKTEKTQRSSFQDDVEFRKLGLQVVSSLSGELTNVRKAAAM 764 (915)
Q Consensus 685 SL~KL~dvKs~D~k~TLLhyVVe~Iir~e~~~l~~~~~~~~~~~~~~~~f~ed~e~~klgl~~V~~ls~EL~~V~kAAki 764 (915)
+|.||.|||++|+++|||||||+.+.+ ++++ +.+|.+||.+|.+|++|
T Consensus 163 sL~KL~d~Ks~d~k~TLLh~lv~~~~~---------------------~~p~-----------l~~f~~eL~~v~~Askv 210 (340)
T 1v9d_A 163 FLCKLRDTKSADQKMTLLHFLAELCEN---------------------DHPE-----------VLKFPDELAHVEKASRV 210 (340)
T ss_dssp CHHHHHHSBCSSTTSBHHHHHHHHHHH---------------------SCCT-----------TSSGGGGCTTHHHHHHC
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHH---------------------HCCH-----------HCCCHHHHHHHHHHHHC
T ss_conf 888655410789976299999999997---------------------3905-----------21663578859999757
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999999999999999999987776542111355688999999999999999999999999999999650699876
Q 002497 765 DSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAEQEIISIQSQESVALSMVKEITEYFHGNSAK 844 (915)
Q Consensus 765 d~e~L~sdv~kL~~~l~ki~~~l~~~~~~~~~e~~d~F~~~M~~Fl~~Ae~ei~~Lq~~~~~~~~~~k~l~~YFGEdp~k 844 (915)
++++|..++.+|++++.+++..++... ...+..|+|.++|..|+..|+.++..|+..++++++.|++++.|||||+++
T Consensus 211 s~~~l~~~l~~l~~~~~~~~~~l~~~~--~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~ 288 (340)
T 1v9d_A 211 SAENLQKSLDQMKKQIADVERDVQNFP--AATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK 288 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCC--CCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 799999999999999999999998540--355400889999888999999999999999999999999999982989887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6468111679999999999999999998643
Q 002497 845 EEAHPFRIFLVVKEFLSTLDQVCKEVGRINE 875 (915)
Q Consensus 845 ~ea~p~~fF~~l~dFl~~ldka~kEv~k~~e 875 (915)
..+.+||++|.+|+.+|++||+|+.+..+
T Consensus 289 --~~~~~fF~~~~~F~~~f~~a~~en~~r~e 317 (340)
T 1v9d_A 289 --LSVEEFFMDLHNFRNMFLQAVKENQKRRE 317 (340)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --99999999999999999999999999999
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=1.00 E-value=1 Score=37.97 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7899989999999999999999999999999999999999889999889999999888999999964
Q 002497 371 NKNNSSVSSSSRSDSSGTQNSPDRAVPVKLPPPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPV 437 (915)
Q Consensus 371 ~~~~~~~~~~~p~~~~~~~~~p~~~~p~~~pppPPPpppp~~~~~p~pppppp~pp~~ppP~PppPp 437 (915)
.+..++++..+|....++++..+....|++++|||++||+.++++++++++++++++.+|+.+++++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (448)
T 2z73_A 379 QKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQA 445 (448)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8899999999878999876788988988789897697989989789898989999888778999999
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=32.52 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999999999999999999998741588
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKHR 158 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~ 158 (915)
||..|+..++.++ +++++.+||||||++.
T Consensus 13 IA~gVVgGv~~~~-ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 13 IATGMVGALLLLL-VVALGIGLFMRRRHIV 41 (44)
T ss_dssp STHHHHHHHHHHH-HHHHHHHHHHHTTTCC
T ss_pred EEEEHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 8864047999999-9999999985123764
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=31.91 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999999999999999987415889
Q 002497 129 IILAISLSFLSAAVLIAAAAVFIYFRSKHRS 159 (915)
Q Consensus 129 ~~~ai~~~~~~~~~~~~~~~~~~~rr~~~~~ 159 (915)
||..|+..++.++ +++++.+||||||++.+
T Consensus 12 IA~gVVgGv~~v~-ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 12 IAAGVIGGLFILV-IVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHTTCSSC
T ss_pred EEEEEHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_conf 8875027999999-99999999751466653
No 9
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999998899998899999
Q 002497 397 PVKLPPPPPPLPPARFWEVPMAAPKSS 423 (915)
Q Consensus 397 p~~~pppPPPpppp~~~~~p~pppppp 423 (915)
+++++|||||||+++.++++++|++|.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (449)
T 3iot_A 404 QPPPPPPPPPPPQLPQPPPQAQPLLPQ 430 (449)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 879897888769999997989999998
No 10
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=30.24 Aligned_cols=123 Identities=20% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778888899887766666789999999998888888999999-8124434444320157899989999999999999999
Q 002497 314 GSSSRNFGSRSFNSRTASYPYSHSCSPTNSITSSCNSVSRNS-SPNLMMKSRFQENAHNKNNSSVSSSSRSDSSGTQNSP 392 (915)
Q Consensus 314 ~~~~~~~~~~~~~~~~~s~~~s~~~sp~~s~s~~~~sp~~~~-sp~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~p 392 (915)
.++.-...+.+....+++|+.++......|.+.+++||+.++ ||. .+.+++..++.+...++.+|.
T Consensus 1623 tSPsysptSPs~sptsPsysptsPs~sptSPs~sptspsysp~SPs-------------ySp~Sps~Sp~sps~sp~sP~ 1689 (1752)
T 3h0g_A 1623 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-------------YSPTSPSYSPTSPSYSPTSPS 1689 (1752)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 8998888999888889998898999899888879989988998998-------------899998889999988886889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999999999889999889999999888999999964434578778973
Q 002497 393 DRAVPVKLPPPPPPLPPARFWEVPMAAPKSSGHPVLVAPSSLRPVGLKNLGLSLGNE 449 (915)
Q Consensus 393 ~~~~p~~~pppPPPpppp~~~~~p~pppppp~pp~~ppP~PppPp~~~~g~~~~~pp 449 (915)
..+..|...|.-|..+|+..-.+|+.|..+|..|.-.+++|...+..+...+..+..
T Consensus 1690 ~sp~sPsySp~sp~~sp~sp~~sP~sp~~sp~sP~ysp~sps~sp~sp~~Sp~sp~~ 1746 (1752)
T 3h0g_A 1690 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746 (1752)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 888899989999998999888899998899999988889988888998789989888
Done!