Query 002498
Match_columns 915
No_of_seqs 361 out of 2045
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 3E-113 7E-118 984.0 47.0 819 16-910 1-851 (913)
2 KOG0243 Kinesin-like protein [ 100.0 1.9E-88 4.1E-93 791.8 79.3 360 7-396 48-421 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1.1E-92 2.4E-97 808.5 30.8 363 7-398 3-380 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.2E-92 2.6E-97 797.3 28.1 356 6-397 3-367 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 3.1E-86 6.7E-91 722.0 41.7 337 4-378 3-343 (607)
6 PLN03188 kinesin-12 family pro 100.0 2.8E-84 6E-89 762.6 34.7 355 7-396 97-463 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 6.3E-81 1.4E-85 697.5 33.2 361 7-397 3-382 (1714)
8 KOG0242 Kinesin-like protein [ 100.0 3.1E-81 6.7E-86 735.4 29.8 348 7-397 5-363 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 3.3E-80 7.1E-85 686.7 31.0 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 1.1E-79 2.3E-84 682.9 30.3 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.2E-77 2.5E-82 667.8 31.0 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.2E-77 4.8E-82 670.3 31.9 337 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 9.4E-77 2E-81 665.3 31.3 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.3E-76 5E-81 660.4 31.5 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 2E-75 4.4E-80 648.6 30.3 323 9-366 2-333 (333)
16 cd01367 KISc_KIF2_like Kinesin 100.0 2E-75 4.4E-80 645.0 29.6 307 9-364 2-322 (322)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.7E-75 8E-80 645.9 31.7 320 8-366 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 5.4E-74 1.2E-78 633.4 28.6 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 1.5E-73 3.2E-78 631.5 30.3 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.6E-73 3.5E-78 633.0 30.0 319 9-364 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.1E-71 2.3E-76 619.7 31.5 321 7-368 1-328 (329)
22 smart00129 KISc Kinesin motor, 100.0 5E-71 1.1E-75 616.7 31.5 327 9-373 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 4.8E-72 1E-76 654.7 23.7 324 8-372 314-646 (670)
24 KOG0246 Kinesin-like protein [ 100.0 1.4E-69 3.1E-74 588.2 26.5 323 6-371 206-546 (676)
25 KOG0247 Kinesin-like protein [ 100.0 3.1E-68 6.6E-73 594.2 33.5 333 9-374 32-444 (809)
26 PF00225 Kinesin: Kinesin moto 100.0 1.9E-69 4.2E-74 604.5 21.9 322 15-366 1-335 (335)
27 cd00106 KISc Kinesin motor dom 100.0 3.5E-68 7.7E-73 592.6 30.4 318 9-364 1-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 8E-62 1.7E-66 568.0 27.5 290 45-374 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 5.4E-49 1.2E-53 401.0 16.4 179 64-345 8-186 (186)
30 KOG0161 Myosin class II heavy 99.9 7.8E-24 1.7E-28 266.8 47.7 471 368-914 827-1355(1930)
31 KOG0161 Myosin class II heavy 99.4 4.4E-09 9.6E-14 134.9 45.4 366 496-914 902-1299(1930)
32 PF01576 Myosin_tail_1: Myosin 99.3 2.7E-13 5.8E-18 167.3 0.0 230 651-914 11-241 (859)
33 PRK02224 chromosome segregatio 98.9 0.0004 8.7E-09 88.3 55.0 47 862-908 594-640 (880)
34 PRK03918 chromosome segregatio 98.9 0.001 2.2E-08 84.8 57.9 13 86-98 28-40 (880)
35 COG1196 Smc Chromosome segrega 98.8 0.00091 2E-08 87.0 55.1 31 65-98 11-41 (1163)
36 PRK02224 chromosome segregatio 98.8 0.0017 3.6E-08 82.7 54.8 14 85-98 27-40 (880)
37 PF07888 CALCOCO1: Calcium bin 98.6 0.0016 3.4E-08 75.1 42.2 48 859-906 409-456 (546)
38 KOG4674 Uncharacterized conser 98.5 0.015 3.3E-07 75.1 52.8 163 498-668 727-892 (1822)
39 TIGR00606 rad50 rad50. This fa 98.5 0.0093 2E-07 78.8 51.8 109 498-624 795-903 (1311)
40 TIGR02168 SMC_prok_B chromosom 98.5 0.015 3.2E-07 76.7 54.2 16 83-98 25-40 (1179)
41 TIGR00606 rad50 rad50. This fa 98.5 0.016 3.5E-07 76.6 52.7 16 83-98 30-45 (1311)
42 TIGR02169 SMC_prok_A chromosom 98.4 0.031 6.6E-07 73.6 55.3 14 85-98 27-40 (1164)
43 PRK03918 chromosome segregatio 98.4 0.026 5.5E-07 72.1 56.9 6 53-58 28-33 (880)
44 PF01576 Myosin_tail_1: Myosin 98.4 8.2E-08 1.8E-12 119.1 0.0 183 569-767 319-505 (859)
45 KOG0977 Nuclear envelope prote 98.3 0.0011 2.4E-08 76.3 33.0 143 726-900 240-382 (546)
46 PF00038 Filament: Intermediat 98.3 0.00097 2.1E-08 74.1 29.9 227 498-768 21-254 (312)
47 TIGR02168 SMC_prok_B chromosom 98.3 0.057 1.2E-06 71.2 56.2 15 50-64 25-39 (1179)
48 KOG4674 Uncharacterized conser 98.2 0.06 1.3E-06 69.9 56.3 194 499-697 658-861 (1822)
49 TIGR02169 SMC_prok_A chromosom 98.2 0.035 7.7E-07 73.1 47.1 20 501-520 183-202 (1164)
50 KOG0971 Microtubule-associated 98.1 0.051 1.1E-06 64.7 40.4 26 673-698 417-442 (1243)
51 KOG4643 Uncharacterized coiled 98.1 0.07 1.5E-06 64.5 47.9 97 533-629 320-435 (1195)
52 PF00038 Filament: Intermediat 98.0 0.041 8.9E-07 61.1 41.1 84 535-628 11-94 (312)
53 COG5059 KIP1 Kinesin-like prot 98.0 7.5E-08 1.6E-12 114.1 -10.0 255 3-305 300-566 (568)
54 PF07888 CALCOCO1: Calcium bin 98.0 0.071 1.5E-06 61.9 40.9 45 726-770 412-457 (546)
55 PF12128 DUF3584: Protein of u 98.0 0.18 3.8E-06 66.3 52.9 134 499-633 317-459 (1201)
56 KOG0977 Nuclear envelope prote 97.9 0.0064 1.4E-07 70.3 28.4 208 577-827 147-380 (546)
57 KOG0612 Rho-associated, coiled 97.9 0.15 3.2E-06 63.3 43.6 47 832-879 742-788 (1317)
58 PRK01156 chromosome segregatio 97.8 0.23 5E-06 63.5 55.1 16 83-98 25-40 (895)
59 KOG4673 Transcription factor T 97.8 0.13 2.7E-06 59.8 43.3 38 527-564 401-438 (961)
60 KOG0976 Rho/Rac1-interacting s 97.8 0.16 3.4E-06 59.9 40.8 31 529-559 121-151 (1265)
61 KOG0612 Rho-associated, coiled 97.7 0.27 5.9E-06 61.1 40.9 161 568-737 564-734 (1317)
62 PF10174 Cast: RIM-binding pro 97.7 0.25 5.5E-06 60.5 49.4 35 738-772 570-604 (775)
63 KOG4643 Uncharacterized coiled 97.7 0.27 5.7E-06 59.8 42.6 108 532-655 261-371 (1195)
64 KOG0964 Structural maintenance 97.7 0.28 6E-06 59.5 41.6 149 579-765 273-425 (1200)
65 PF00261 Tropomyosin: Tropomyo 97.7 0.013 2.8E-07 62.3 23.7 97 532-632 131-227 (237)
66 COG1196 Smc Chromosome segrega 97.7 0.49 1.1E-05 62.0 44.9 9 505-513 196-204 (1163)
67 KOG0971 Microtubule-associated 97.6 0.29 6.2E-06 58.7 36.5 119 634-766 290-411 (1243)
68 PF10174 Cast: RIM-binding pro 97.6 0.35 7.6E-06 59.3 53.4 261 597-908 240-506 (775)
69 PF09726 Macoilin: Transmembra 97.6 0.013 2.8E-07 71.0 25.4 56 647-702 459-517 (697)
70 PRK11637 AmiB activator; Provi 97.6 0.051 1.1E-06 63.1 28.7 73 596-668 178-253 (428)
71 PF12128 DUF3584: Protein of u 97.5 0.75 1.6E-05 60.5 57.2 60 796-857 771-830 (1201)
72 KOG0994 Extracellular matrix g 97.5 0.48 1E-05 58.2 48.1 106 353-469 1177-1297(1758)
73 PRK04778 septation ring format 97.5 0.44 9.6E-06 57.4 36.5 83 540-628 254-336 (569)
74 PRK11637 AmiB activator; Provi 97.5 0.053 1.1E-06 63.0 27.4 81 600-680 171-251 (428)
75 KOG0996 Structural maintenance 97.5 0.59 1.3E-05 58.0 49.2 42 725-766 886-929 (1293)
76 KOG1029 Endocytic adaptor prot 97.3 0.39 8.3E-06 56.7 31.1 17 107-123 43-59 (1118)
77 PRK04863 mukB cell division pr 97.3 1.3 2.7E-05 58.8 44.3 16 83-98 29-44 (1486)
78 KOG0976 Rho/Rac1-interacting s 97.3 0.63 1.4E-05 55.1 52.1 37 597-633 279-315 (1265)
79 KOG0964 Structural maintenance 97.3 0.61 1.3E-05 56.7 32.9 148 598-766 214-371 (1200)
80 PF09726 Macoilin: Transmembra 97.2 0.31 6.8E-06 59.4 30.6 116 634-771 538-656 (697)
81 KOG4673 Transcription factor T 97.2 0.81 1.7E-05 53.5 48.9 85 605-692 547-631 (961)
82 PRK01156 chromosome segregatio 97.1 1.8 3.8E-05 55.5 59.1 7 131-137 67-73 (895)
83 KOG0999 Microtubule-associated 97.0 0.91 2E-05 51.8 39.3 20 378-397 7-26 (772)
84 PF09755 DUF2046: Uncharacteri 97.0 0.65 1.4E-05 50.1 27.2 58 539-596 139-196 (310)
85 KOG0995 Centromere-associated 97.0 1.2 2.6E-05 51.6 43.9 89 606-695 305-393 (581)
86 KOG0933 Structural maintenance 96.9 1.7 3.8E-05 53.2 36.2 29 738-766 988-1016(1174)
87 KOG1029 Endocytic adaptor prot 96.9 1.5 3.2E-05 52.1 36.8 34 616-655 393-426 (1118)
88 PF15070 GOLGA2L5: Putative go 96.8 1.9 4.1E-05 52.0 39.6 88 540-628 85-179 (617)
89 KOG0250 DNA repair protein RAD 96.7 2.7 5.8E-05 52.4 48.3 104 580-685 374-480 (1074)
90 KOG0996 Structural maintenance 96.7 2.9 6.3E-05 52.3 53.1 38 629-666 544-581 (1293)
91 PRK04778 septation ring format 96.5 2.9 6.3E-05 50.5 40.6 54 644-703 252-305 (569)
92 COG0556 UvrB Helicase subunit 96.5 0.0033 7.2E-08 71.2 5.3 93 46-144 3-99 (663)
93 PHA02562 46 endonuclease subun 96.4 3.3 7.1E-05 50.0 31.7 17 82-98 28-44 (562)
94 PF15070 GOLGA2L5: Putative go 96.4 3.7 7.9E-05 49.6 50.0 95 528-622 115-215 (617)
95 PHA02562 46 endonuclease subun 96.3 2.4 5.2E-05 51.1 29.4 26 534-559 254-279 (562)
96 COG4942 Membrane-bound metallo 96.3 2.8 6.2E-05 47.4 28.5 50 496-550 60-109 (420)
97 PRK04863 mukB cell division pr 96.3 7.2 0.00016 52.0 43.4 31 796-826 565-595 (1486)
98 PF09755 DUF2046: Uncharacteri 96.1 2.7 5.9E-05 45.5 30.1 44 724-767 255-298 (310)
99 KOG0933 Structural maintenance 95.8 7.1 0.00015 48.2 40.2 326 535-897 677-1017(1174)
100 COG4942 Membrane-bound metallo 95.8 4.8 0.0001 45.6 29.6 25 644-668 220-244 (420)
101 PF05557 MAD: Mitotic checkpoi 95.7 0.0095 2.1E-07 73.8 4.7 16 380-395 62-77 (722)
102 PF10481 CENP-F_N: Cenp-F N-te 95.6 0.92 2E-05 47.4 17.4 80 676-766 105-191 (307)
103 PF00261 Tropomyosin: Tropomyo 95.5 4 8.8E-05 43.3 26.3 24 410-433 27-50 (237)
104 COG1579 Zn-ribbon protein, pos 95.5 2.3 4.9E-05 44.7 20.5 21 677-697 153-173 (239)
105 KOG2129 Uncharacterized conser 95.4 3.7 8.1E-05 45.4 22.3 45 611-655 255-299 (552)
106 PF05557 MAD: Mitotic checkpoi 95.4 0.013 2.8E-07 72.6 4.3 26 879-904 508-533 (722)
107 KOG0018 Structural maintenance 95.4 11 0.00024 47.1 45.4 136 498-633 265-433 (1141)
108 KOG0980 Actin-binding protein 94.8 14 0.00029 45.3 31.3 50 372-429 326-375 (980)
109 COG2805 PilT Tfp pilus assembl 94.8 0.015 3.3E-07 61.9 2.0 35 64-98 108-142 (353)
110 KOG0963 Transcription factor/C 94.7 12 0.00026 44.1 37.3 139 644-823 288-438 (629)
111 KOG0250 DNA repair protein RAD 94.5 19 0.00041 45.3 47.1 19 79-98 61-79 (1074)
112 PF15066 CAGE1: Cancer-associa 94.4 11 0.00024 42.6 26.8 113 606-765 408-524 (527)
113 COG1579 Zn-ribbon protein, pos 94.3 5.2 0.00011 42.1 19.2 24 537-560 54-77 (239)
114 KOG0994 Extracellular matrix g 94.1 22 0.00048 44.6 31.7 36 662-697 1710-1745(1758)
115 COG3883 Uncharacterized protei 94.0 9.8 0.00021 40.5 27.6 89 580-668 129-217 (265)
116 PF14662 CCDC155: Coiled-coil 94.0 7.6 0.00016 39.1 21.0 62 500-561 65-128 (193)
117 KOG0018 Structural maintenance 93.9 23 0.0005 44.4 31.3 92 590-697 257-348 (1141)
118 PF06160 EzrA: Septation ring 93.9 19 0.00042 43.3 40.6 28 738-765 307-334 (560)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.8 6.5 0.00014 37.6 19.8 126 604-762 5-130 (132)
120 PF00308 Bac_DnaA: Bacterial d 93.8 0.027 5.8E-07 59.1 1.4 48 47-98 4-51 (219)
121 PF15066 CAGE1: Cancer-associa 93.7 15 0.00033 41.6 26.7 55 608-662 452-506 (527)
122 PRK06893 DNA replication initi 93.7 0.029 6.3E-07 59.3 1.5 46 46-98 11-56 (229)
123 PF06160 EzrA: Septation ring 93.6 21 0.00046 43.0 42.4 22 676-697 347-368 (560)
124 PF05667 DUF812: Protein of un 93.6 21 0.00046 43.0 32.6 77 532-617 451-527 (594)
125 KOG2129 Uncharacterized conser 93.5 15 0.00032 40.9 24.2 203 539-765 104-320 (552)
126 PF15254 CCDC14: Coiled-coil d 93.4 4.5 9.7E-05 48.6 18.4 150 497-668 396-556 (861)
127 PRK09039 hypothetical protein; 93.2 13 0.00028 41.8 21.5 124 530-692 76-199 (343)
128 PF05701 WEMBL: Weak chloropla 93.1 24 0.00052 42.1 53.6 53 844-896 370-422 (522)
129 PF12718 Tropomyosin_1: Tropom 93.0 9.3 0.0002 37.1 17.7 15 575-589 77-91 (143)
130 KOG0995 Centromere-associated 93.0 22 0.00049 41.6 40.6 27 535-561 259-285 (581)
131 PRK06620 hypothetical protein; 92.9 0.028 6.2E-07 58.7 -0.1 48 46-98 11-61 (214)
132 PF05622 HOOK: HOOK protein; 92.7 0.033 7E-07 69.0 0.0 35 602-636 495-529 (713)
133 KOG0946 ER-Golgi vesicle-tethe 92.6 30 0.00066 42.0 29.8 94 793-894 852-945 (970)
134 PF08317 Spc7: Spc7 kinetochor 92.5 8.5 0.00019 42.9 18.9 17 612-628 240-256 (325)
135 PF05701 WEMBL: Weak chloropla 92.2 32 0.00069 41.1 57.8 162 532-697 169-347 (522)
136 TIGR03007 pepcterm_ChnLen poly 92.1 19 0.00042 42.7 22.5 92 500-591 166-267 (498)
137 PF14988 DUF4515: Domain of un 92.1 16 0.00036 37.7 25.7 82 541-633 28-109 (206)
138 PF05010 TACC: Transforming ac 91.8 17 0.00038 37.5 22.0 87 537-629 64-163 (207)
139 PF12718 Tropomyosin_1: Tropom 91.8 13 0.00029 36.0 17.5 29 531-559 111-139 (143)
140 KOG1003 Actin filament-coating 91.8 16 0.00034 36.8 21.2 30 407-436 6-35 (205)
141 PRK09087 hypothetical protein; 91.8 0.071 1.5E-06 56.2 1.2 46 46-98 16-61 (226)
142 PRK09039 hypothetical protein; 91.4 27 0.00059 39.2 21.2 28 644-671 140-167 (343)
143 PRK11281 hypothetical protein; 91.4 56 0.0012 42.5 36.9 188 576-766 126-321 (1113)
144 PF10473 CENP-F_leu_zip: Leuci 91.1 15 0.00033 35.4 16.8 60 498-562 20-79 (140)
145 COG2804 PulE Type II secretory 91.1 0.097 2.1E-06 60.2 1.5 31 70-100 247-277 (500)
146 PRK14086 dnaA chromosomal repl 91.0 0.073 1.6E-06 63.3 0.4 49 46-98 283-331 (617)
147 PF05622 HOOK: HOOK protein; 90.9 0.068 1.5E-06 66.2 0.0 19 746-764 400-418 (713)
148 PF05911 DUF869: Plant protein 90.9 51 0.0011 41.0 30.1 191 498-697 20-224 (769)
149 PRK05642 DNA replication initi 90.1 0.14 3E-06 54.3 1.5 45 46-98 14-62 (234)
150 TIGR03185 DNA_S_dndD DNA sulfu 90.1 56 0.0012 40.2 35.6 69 600-668 221-289 (650)
151 PF09787 Golgin_A5: Golgin sub 89.8 50 0.0011 39.3 30.9 136 610-768 289-430 (511)
152 PRK14088 dnaA chromosomal repl 89.6 0.11 2.4E-06 60.4 0.3 48 46-98 100-147 (440)
153 PF05010 TACC: Transforming ac 89.4 28 0.00062 35.9 25.7 85 606-697 101-185 (207)
154 COG1474 CDC6 Cdc6-related prot 89.4 0.41 8.9E-06 54.2 4.7 28 71-98 31-59 (366)
155 KOG4593 Mitotic checkpoint pro 89.4 57 0.0012 39.3 45.7 43 723-765 363-412 (716)
156 COG0593 DnaA ATPase involved i 89.1 0.15 3.2E-06 57.9 0.8 49 46-98 82-130 (408)
157 PF09728 Taxilin: Myosin-like 88.9 42 0.00091 37.1 34.3 72 617-692 203-277 (309)
158 COG5008 PilU Tfp pilus assembl 88.8 0.28 6.1E-06 51.5 2.5 43 69-111 115-159 (375)
159 PF12325 TMF_TATA_bd: TATA ele 88.6 21 0.00047 33.5 15.4 49 578-629 68-116 (120)
160 KOG0999 Microtubule-associated 88.6 55 0.0012 38.1 38.1 152 498-656 11-178 (772)
161 PF05667 DUF812: Protein of un 88.4 66 0.0014 38.9 37.0 17 502-518 328-344 (594)
162 PF13245 AAA_19: Part of AAA d 88.3 0.25 5.5E-06 42.4 1.5 25 73-98 3-27 (76)
163 KOG0980 Actin-binding protein 88.1 76 0.0016 39.2 36.2 85 613-698 390-477 (980)
164 KOG4593 Mitotic checkpoint pro 88.0 69 0.0015 38.6 41.6 40 726-765 277-320 (716)
165 COG4372 Uncharacterized protei 88.0 49 0.0011 36.8 28.9 35 590-624 132-166 (499)
166 smart00787 Spc7 Spc7 kinetocho 87.9 36 0.00078 37.7 18.3 26 608-633 231-256 (312)
167 PRK06526 transposase; Provisio 87.8 0.22 4.8E-06 53.4 1.1 16 84-99 101-116 (254)
168 PF08826 DMPK_coil: DMPK coile 87.7 8.5 0.00018 31.4 9.8 57 851-907 2-58 (61)
169 KOG0978 E3 ubiquitin ligase in 87.7 76 0.0016 38.7 50.0 58 839-896 559-616 (698)
170 PRK08084 DNA replication initi 87.7 0.25 5.5E-06 52.4 1.5 46 45-98 16-62 (235)
171 PRK00149 dnaA chromosomal repl 87.7 0.21 4.6E-06 58.5 0.9 49 46-98 117-165 (450)
172 PF09730 BicD: Microtubule-ass 87.6 80 0.0017 38.9 46.3 149 498-655 30-184 (717)
173 PRK12377 putative replication 87.5 0.23 4.9E-06 53.1 0.9 49 47-98 70-118 (248)
174 KOG1899 LAR transmembrane tyro 87.4 45 0.00098 39.3 18.8 44 582-628 178-221 (861)
175 KOG0946 ER-Golgi vesicle-tethe 87.3 81 0.0017 38.6 29.1 59 496-559 658-716 (970)
176 PF15619 Lebercilin: Ciliary p 87.3 38 0.00082 34.7 25.4 81 535-633 12-92 (194)
177 PF00437 T2SE: Type II/IV secr 87.2 0.33 7.2E-06 52.6 2.0 34 65-98 108-144 (270)
178 PF12325 TMF_TATA_bd: TATA ele 87.1 21 0.00046 33.5 13.6 49 375-435 12-60 (120)
179 TIGR00362 DnaA chromosomal rep 87.0 0.22 4.9E-06 57.4 0.6 49 46-98 105-153 (405)
180 TIGR01420 pilT_fam pilus retra 87.0 0.44 9.5E-06 53.7 2.9 35 64-98 105-139 (343)
181 PRK08727 hypothetical protein; 87.0 0.28 6E-06 52.0 1.2 44 46-98 14-58 (233)
182 PRK14087 dnaA chromosomal repl 86.9 0.23 4.9E-06 58.0 0.6 48 47-98 111-158 (450)
183 COG4372 Uncharacterized protei 86.4 59 0.0013 36.2 30.0 14 293-306 8-21 (499)
184 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.1 32 0.0007 32.8 18.0 43 590-632 47-89 (132)
185 TIGR03420 DnaA_homol_Hda DnaA 86.0 0.35 7.5E-06 50.7 1.4 46 46-98 10-55 (226)
186 PF15619 Lebercilin: Ciliary p 85.9 44 0.00096 34.2 25.7 73 610-700 13-85 (194)
187 PRK08116 hypothetical protein; 85.9 0.25 5.5E-06 53.5 0.3 50 46-98 80-131 (268)
188 PF04851 ResIII: Type III rest 85.8 0.33 7.2E-06 48.6 1.1 30 69-98 12-42 (184)
189 cd00009 AAA The AAA+ (ATPases 85.7 0.41 9E-06 45.4 1.7 28 71-98 9-36 (151)
190 TIGR00631 uvrb excinuclease AB 85.6 0.31 6.7E-06 59.4 0.8 92 48-145 2-97 (655)
191 KOG4809 Rab6 GTPase-interactin 85.4 81 0.0017 36.8 24.6 74 498-571 376-464 (654)
192 TIGR01005 eps_transp_fam exopo 85.2 81 0.0017 39.6 22.0 63 499-561 198-263 (754)
193 KOG0804 Cytoplasmic Zn-finger 85.2 19 0.00042 40.7 14.1 39 193-237 120-159 (493)
194 PF14915 CCDC144C: CCDC144C pr 85.2 60 0.0013 35.1 32.9 107 797-911 138-251 (305)
195 COG0419 SbcC ATPase involved i 85.1 1.3E+02 0.0028 38.8 56.9 17 82-98 26-42 (908)
196 PRK07952 DNA replication prote 85.0 0.34 7.4E-06 51.6 0.7 50 46-98 67-116 (244)
197 PF00769 ERM: Ezrin/radixin/mo 85.0 48 0.001 35.4 16.9 92 574-672 8-99 (246)
198 PRK08903 DnaA regulatory inact 84.9 0.47 1E-05 49.9 1.7 47 46-98 13-59 (227)
199 PRK10436 hypothetical protein; 84.8 0.43 9.3E-06 55.6 1.5 27 72-98 209-235 (462)
200 PF09730 BicD: Microtubule-ass 84.7 1.1E+02 0.0024 37.7 53.6 157 535-692 265-449 (717)
201 PRK00411 cdc6 cell division co 84.4 0.47 1E-05 54.5 1.6 27 72-98 45-72 (394)
202 PF10168 Nup88: Nuclear pore c 84.4 38 0.00082 42.0 17.8 26 670-695 686-711 (717)
203 TIGR02533 type_II_gspE general 84.2 0.5 1.1E-05 55.6 1.7 28 72-99 233-260 (486)
204 cd01131 PilT Pilus retraction 84.2 0.42 9.2E-06 49.2 1.0 18 81-98 1-18 (198)
205 TIGR02524 dot_icm_DotB Dot/Icm 84.2 0.53 1.2E-05 53.1 1.8 26 73-98 126-151 (358)
206 PF14988 DUF4515: Domain of un 84.2 56 0.0012 33.9 25.8 80 528-612 40-124 (206)
207 TIGR02538 type_IV_pilB type IV 84.0 0.47 1E-05 57.1 1.4 27 72-98 307-333 (564)
208 PF05673 DUF815: Protein of un 83.9 0.37 8.1E-06 50.7 0.4 26 73-98 43-69 (249)
209 TIGR02525 plasmid_TraJ plasmid 83.8 0.57 1.2E-05 53.1 1.8 27 71-98 140-166 (372)
210 smart00053 DYNc Dynamin, GTPas 83.6 1.7 3.7E-05 46.1 5.3 54 194-274 85-138 (240)
211 PF05483 SCP-1: Synaptonemal c 83.4 1.1E+02 0.0024 36.8 52.2 38 723-760 635-673 (786)
212 PRK06835 DNA replication prote 83.3 0.62 1.4E-05 51.9 1.9 29 69-98 172-200 (329)
213 PF13851 GAS: Growth-arrest sp 83.2 60 0.0013 33.5 19.2 26 671-696 141-166 (201)
214 PF09738 DUF2051: Double stran 82.9 80 0.0017 34.7 19.7 53 577-632 83-135 (302)
215 TIGR02928 orc1/cdc6 family rep 82.9 0.48 1E-05 53.7 0.8 27 72-98 30-57 (365)
216 PF13401 AAA_22: AAA domain; P 82.7 0.45 9.7E-06 45.0 0.4 18 81-98 4-21 (131)
217 cd00046 DEXDc DEAD-like helica 82.7 0.53 1.1E-05 44.2 0.9 15 84-98 3-17 (144)
218 PF14992 TMCO5: TMCO5 family 82.5 25 0.00055 37.7 13.3 58 534-593 115-175 (280)
219 PF05483 SCP-1: Synaptonemal c 82.2 1.2E+02 0.0027 36.4 52.0 43 578-620 370-416 (786)
220 TIGR02782 TrbB_P P-type conjug 82.0 0.48 1E-05 52.2 0.4 28 70-98 122-149 (299)
221 PF13604 AAA_30: AAA domain; P 81.9 0.74 1.6E-05 47.4 1.7 28 71-98 8-35 (196)
222 KOG4360 Uncharacterized coiled 81.8 1.1E+02 0.0024 35.5 20.7 86 648-766 219-304 (596)
223 smart00382 AAA ATPases associa 81.7 0.61 1.3E-05 43.8 1.0 17 82-98 3-19 (148)
224 PRK10929 putative mechanosensi 81.6 1.8E+02 0.0039 37.9 40.0 42 725-766 260-301 (1109)
225 PRK08181 transposase; Validate 81.1 0.62 1.3E-05 50.4 0.8 19 78-98 105-123 (269)
226 PF04849 HAP1_N: HAP1 N-termin 81.0 92 0.002 34.1 25.9 88 645-765 217-304 (306)
227 PF07111 HCR: Alpha helical co 80.9 1.4E+02 0.003 36.2 54.8 34 602-635 331-364 (739)
228 PF10146 zf-C4H2: Zinc finger- 80.7 60 0.0013 34.2 15.3 72 535-624 32-103 (230)
229 cd01129 PulE-GspE PulE/GspE Th 80.3 0.91 2E-05 49.1 1.8 27 72-98 71-97 (264)
230 PF08614 ATG16: Autophagy prot 80.2 17 0.00037 37.3 11.0 31 796-826 74-104 (194)
231 PF13514 AAA_27: AAA domain 80.2 2.1E+02 0.0045 37.8 55.0 161 381-559 152-327 (1111)
232 PF00270 DEAD: DEAD/DEAH box h 80.0 0.87 1.9E-05 45.0 1.4 25 72-98 7-31 (169)
233 COG0419 SbcC ATPase involved i 79.8 1.9E+02 0.0042 37.2 57.1 10 726-735 528-537 (908)
234 PF04156 IncA: IncA protein; 79.6 53 0.0012 33.4 14.5 11 576-586 128-138 (191)
235 KOG1899 LAR transmembrane tyro 79.4 1.2E+02 0.0027 35.9 18.0 29 407-435 106-134 (861)
236 TIGR03017 EpsF chain length de 79.4 1.3E+02 0.0028 35.0 22.6 92 500-591 176-274 (444)
237 PF01935 DUF87: Domain of unkn 79.3 0.81 1.8E-05 48.2 1.0 15 84-98 26-40 (229)
238 PRK08939 primosomal protein Dn 79.1 0.65 1.4E-05 51.3 0.2 50 48-99 124-174 (306)
239 PRK12422 chromosomal replicati 78.5 0.9 1.9E-05 52.9 1.1 49 46-98 106-158 (445)
240 PRK06921 hypothetical protein; 78.4 0.72 1.6E-05 49.9 0.3 18 81-98 117-134 (266)
241 PF00448 SRP54: SRP54-type pro 78.2 0.83 1.8E-05 47.0 0.6 16 83-98 3-18 (196)
242 KOG0926 DEAH-box RNA helicase 78.2 1.4 3.1E-05 52.8 2.6 18 81-98 271-288 (1172)
243 PF04156 IncA: IncA protein; 77.8 60 0.0013 33.0 14.2 97 796-900 88-184 (191)
244 KOG0989 Replication factor C, 77.8 1.1 2.4E-05 48.4 1.4 37 62-98 37-74 (346)
245 PF14662 CCDC155: Coiled-coil 77.8 84 0.0018 31.9 26.2 131 536-696 9-139 (193)
246 PF10481 CENP-F_N: Cenp-F N-te 77.8 45 0.00098 35.4 12.9 106 650-775 27-133 (307)
247 PF04111 APG6: Autophagy prote 77.4 43 0.00093 37.2 13.8 24 537-560 45-68 (314)
248 PF12846 AAA_10: AAA-like doma 77.3 0.97 2.1E-05 49.3 0.9 18 81-98 1-18 (304)
249 PF01695 IstB_IS21: IstB-like 77.1 1.3 2.7E-05 44.9 1.6 30 69-98 35-64 (178)
250 PF00004 AAA: ATPase family as 77.0 0.93 2E-05 42.6 0.6 15 84-98 1-15 (132)
251 PF07058 Myosin_HC-like: Myosi 77.0 43 0.00094 36.1 12.6 115 503-620 36-161 (351)
252 PF13207 AAA_17: AAA domain; P 76.9 1 2.2E-05 42.0 0.8 16 83-98 1-16 (121)
253 PRK13833 conjugal transfer pro 76.8 0.89 1.9E-05 50.5 0.4 27 71-98 135-161 (323)
254 COG1484 DnaC DNA replication p 76.6 1 2.2E-05 48.4 0.8 34 62-98 89-122 (254)
255 PRK13894 conjugal transfer ATP 76.4 1.3 2.7E-05 49.3 1.5 27 71-98 139-165 (319)
256 PF00769 ERM: Ezrin/radixin/mo 76.4 83 0.0018 33.6 15.1 47 503-554 6-52 (246)
257 PF15397 DUF4618: Domain of un 76.0 1.2E+02 0.0025 32.6 28.5 91 537-629 8-101 (258)
258 PF01637 Arch_ATPase: Archaeal 75.9 1.2 2.5E-05 46.5 1.0 29 70-98 9-37 (234)
259 KOG1003 Actin filament-coating 75.9 95 0.0021 31.5 19.7 18 379-396 4-21 (205)
260 PF13086 AAA_11: AAA domain; P 75.9 1.2 2.6E-05 46.4 1.1 25 73-98 10-34 (236)
261 PF13479 AAA_24: AAA domain 75.6 1.2 2.7E-05 46.4 1.1 19 81-99 3-21 (213)
262 PF10146 zf-C4H2: Zinc finger- 75.5 98 0.0021 32.6 15.0 49 536-596 2-50 (230)
263 PF13191 AAA_16: AAA ATPase do 75.3 1 2.3E-05 45.2 0.4 27 72-98 15-41 (185)
264 PF06785 UPF0242: Uncharacteri 75.3 1.3E+02 0.0029 32.9 17.3 23 792-814 197-219 (401)
265 PF05911 DUF869: Plant protein 75.2 2.3E+02 0.0049 35.5 22.1 46 382-432 20-65 (769)
266 COG5185 HEC1 Protein involved 75.1 1.6E+02 0.0035 33.8 40.7 61 498-560 260-320 (622)
267 PTZ00112 origin recognition co 75.1 1.4 3E-05 54.3 1.4 28 71-98 769-798 (1164)
268 PF10168 Nup88: Nuclear pore c 75.0 2.2E+02 0.0049 35.4 20.8 24 260-283 367-390 (717)
269 PF08614 ATG16: Autophagy prot 75.0 21 0.00046 36.6 9.9 30 796-825 67-96 (194)
270 PRK11281 hypothetical protein; 74.8 2.8E+02 0.0061 36.4 44.6 15 606-620 238-252 (1113)
271 PF06785 UPF0242: Uncharacteri 74.7 1E+02 0.0023 33.7 14.9 41 666-706 145-185 (401)
272 PLN00020 ribulose bisphosphate 74.7 1.3 2.7E-05 49.6 0.9 51 47-98 111-165 (413)
273 PF15294 Leu_zip: Leucine zipp 74.0 1.2E+02 0.0025 32.9 15.2 144 512-693 128-277 (278)
274 cd01130 VirB11-like_ATPase Typ 73.8 1.7 3.7E-05 44.2 1.6 29 69-98 14-42 (186)
275 COG4962 CpaF Flp pilus assembl 73.2 1.7 3.6E-05 47.9 1.4 75 71-153 164-270 (355)
276 PRK06547 hypothetical protein; 73.0 2.1 4.6E-05 43.0 2.0 30 69-98 3-32 (172)
277 PF06309 Torsin: Torsin; Inte 72.9 1.2 2.6E-05 42.0 0.2 26 83-121 54-80 (127)
278 TIGR01843 type_I_hlyD type I s 72.9 1.8E+02 0.0039 33.3 22.5 20 678-697 251-270 (423)
279 TIGR03185 DNA_S_dndD DNA sulfu 72.9 2.4E+02 0.0052 34.8 37.6 16 83-98 30-45 (650)
280 PTZ00454 26S protease regulato 72.9 1.2 2.5E-05 51.1 0.1 51 47-98 141-196 (398)
281 KOG0651 26S proteasome regulat 72.8 1.8 3.9E-05 46.8 1.4 80 45-125 126-224 (388)
282 COG1201 Lhr Lhr-like helicases 72.7 3.6 7.7E-05 50.9 4.1 25 72-98 30-54 (814)
283 TIGR03015 pepcterm_ATPase puta 72.7 2.1 4.6E-05 46.1 2.0 21 78-98 40-60 (269)
284 PHA00729 NTP-binding motif con 72.5 2.2 4.7E-05 44.8 1.9 29 70-98 6-34 (226)
285 PHA02544 44 clamp loader, smal 72.4 1.6 3.6E-05 48.3 1.1 21 78-98 39-60 (316)
286 PF10473 CENP-F_leu_zip: Leuci 72.3 97 0.0021 30.0 18.8 91 528-629 17-107 (140)
287 PF08317 Spc7: Spc7 kinetochor 72.3 1.7E+02 0.0036 32.7 26.8 96 570-668 148-243 (325)
288 COG2433 Uncharacterized conser 72.2 63 0.0014 38.3 13.5 16 109-124 164-179 (652)
289 PRK09183 transposase/IS protei 71.8 1.6 3.4E-05 47.1 0.7 19 78-98 101-119 (259)
290 TIGR00634 recN DNA repair prot 71.7 2.4E+02 0.0051 34.2 25.3 14 85-98 26-39 (563)
291 PF00580 UvrD-helicase: UvrD/R 71.3 1.8 3.9E-05 47.5 1.1 23 76-98 8-30 (315)
292 COG1223 Predicted ATPase (AAA+ 71.1 1.8 3.8E-05 45.6 0.9 17 82-98 152-168 (368)
293 PRK13851 type IV secretion sys 71.0 1.8 3.8E-05 48.6 1.0 27 71-98 153-179 (344)
294 TIGR03345 VI_ClpV1 type VI sec 70.9 7.2 0.00016 49.3 6.4 99 82-209 597-696 (852)
295 PF02562 PhoH: PhoH-like prote 70.8 2.3 4.9E-05 44.0 1.6 24 73-98 13-36 (205)
296 KOG2373 Predicted mitochondria 70.7 2.1 4.5E-05 46.8 1.3 27 71-98 261-290 (514)
297 PRK13764 ATPase; Provisional 70.5 2.1 4.6E-05 51.3 1.5 24 75-98 251-274 (602)
298 PF13671 AAA_33: AAA domain; P 70.4 1.8 3.9E-05 41.5 0.8 15 84-98 2-16 (143)
299 PRK13900 type IV secretion sys 70.0 2.3 5E-05 47.6 1.6 27 71-98 151-177 (332)
300 PF02456 Adeno_IVa2: Adenoviru 69.9 1.8 4E-05 46.7 0.7 69 84-152 90-186 (369)
301 PRK12402 replication factor C 69.8 2.3 5E-05 47.5 1.6 21 78-98 33-53 (337)
302 PF00910 RNA_helicase: RNA hel 69.6 1.7 3.6E-05 39.9 0.3 15 84-98 1-15 (107)
303 KOG0340 ATP-dependent RNA heli 69.4 7.2 0.00016 42.9 5.0 27 72-100 37-63 (442)
304 PF03962 Mnd1: Mnd1 family; I 69.1 80 0.0017 32.2 12.4 35 528-562 62-96 (188)
305 COG1340 Uncharacterized archae 69.0 1.8E+02 0.0039 31.7 33.3 26 633-658 54-79 (294)
306 TIGR03499 FlhF flagellar biosy 69.0 2 4.4E-05 46.9 0.9 16 83-98 196-211 (282)
307 PRK12723 flagellar biosynthesi 68.7 2.2 4.9E-05 48.6 1.2 18 81-98 174-191 (388)
308 PF10212 TTKRSYEDQ: Predicted 68.5 2.5E+02 0.0054 33.1 26.0 112 288-425 213-329 (518)
309 PF07724 AAA_2: AAA domain (Cd 68.3 2.2 4.7E-05 42.9 0.9 17 82-98 4-20 (171)
310 PF11559 ADIP: Afadin- and alp 68.2 1.2E+02 0.0027 29.5 16.5 6 679-684 136-141 (151)
311 PRK03992 proteasome-activating 68.0 0.92 2E-05 52.0 -2.2 18 81-98 165-182 (389)
312 smart00487 DEXDc DEAD-like hel 67.5 3.3 7.2E-05 41.4 2.1 26 72-98 16-41 (201)
313 PRK14722 flhF flagellar biosyn 67.5 2.4 5.2E-05 48.0 1.1 18 81-98 137-154 (374)
314 COG1219 ClpX ATP-dependent pro 67.4 2.5 5.4E-05 45.9 1.1 16 82-97 98-113 (408)
315 KOG3859 Septins (P-loop GTPase 67.4 4.7 0.0001 42.8 3.0 28 71-98 31-59 (406)
316 PRK10884 SH3 domain-containing 67.2 93 0.002 32.3 12.4 20 678-697 151-170 (206)
317 KOG0962 DNA repair protein RAD 67.1 4E+02 0.0087 35.1 51.8 75 838-912 1000-1079(1294)
318 PF13238 AAA_18: AAA domain; P 67.1 2.2 4.8E-05 39.8 0.6 15 84-98 1-15 (129)
319 PF07728 AAA_5: AAA domain (dy 67.1 2.1 4.6E-05 41.0 0.5 15 84-98 2-16 (139)
320 KOG0249 LAR-interacting protei 66.9 3E+02 0.0065 33.5 18.4 22 499-520 109-130 (916)
321 COG1136 SalX ABC-type antimicr 66.7 2.3 5E-05 44.5 0.7 15 84-98 34-48 (226)
322 PRK13342 recombination factor 66.7 2.7 5.8E-05 48.7 1.3 27 72-98 27-53 (413)
323 KOG0953 Mitochondrial RNA heli 66.6 4.5 9.9E-05 46.9 3.0 43 83-125 193-238 (700)
324 PRK10884 SH3 domain-containing 66.6 73 0.0016 33.0 11.6 13 579-591 94-106 (206)
325 PF13555 AAA_29: P-loop contai 66.5 2.6 5.6E-05 34.6 0.8 15 84-98 26-40 (62)
326 PF01580 FtsK_SpoIIIE: FtsK/Sp 66.4 2.2 4.7E-05 44.1 0.4 16 83-98 40-55 (205)
327 TIGR02903 spore_lon_C ATP-depe 66.4 2.5 5.4E-05 51.4 1.0 43 47-98 150-192 (615)
328 TIGR02881 spore_V_K stage V sp 66.3 2.8 6.1E-05 45.2 1.3 18 81-98 42-59 (261)
329 smart00763 AAA_PrkA PrkA AAA d 66.3 4.5 9.8E-05 45.3 2.9 19 80-98 77-95 (361)
330 PF03215 Rad17: Rad17 cell cyc 66.1 3.2 7E-05 49.2 1.8 30 69-98 31-62 (519)
331 cd00268 DEADc DEAD-box helicas 66.0 3.6 7.9E-05 42.1 2.0 25 72-98 29-53 (203)
332 KOG0727 26S proteasome regulat 66.0 2.2 4.7E-05 44.6 0.3 117 9-126 98-248 (408)
333 KOG4657 Uncharacterized conser 65.6 1.7E+02 0.0038 30.3 15.9 21 665-685 125-145 (246)
334 KOG0735 AAA+-type ATPase [Post 65.5 5.8 0.00013 47.6 3.6 20 79-98 699-718 (952)
335 KOG4657 Uncharacterized conser 65.2 91 0.002 32.2 11.4 42 535-576 86-127 (246)
336 TIGR03007 pepcterm_ChnLen poly 64.9 2.9E+02 0.0063 32.7 25.7 23 533-555 166-188 (498)
337 PRK09376 rho transcription ter 64.5 12 0.00025 42.6 5.7 52 78-150 168-219 (416)
338 PF08912 Rho_Binding: Rho Bind 64.5 77 0.0017 26.6 8.9 49 861-909 11-63 (69)
339 TIGR02977 phageshock_pspA phag 64.5 1.9E+02 0.0041 30.3 20.3 109 578-693 31-140 (219)
340 COG2256 MGS1 ATPase related to 64.5 3.3 7.2E-05 46.4 1.4 44 48-97 21-64 (436)
341 COG1419 FlhF Flagellar GTP-bin 63.8 3.5 7.6E-05 46.6 1.4 18 81-98 203-220 (407)
342 KOG1853 LIS1-interacting prote 63.5 2E+02 0.0043 30.3 23.3 41 569-609 43-84 (333)
343 PF04849 HAP1_N: HAP1 N-termin 63.1 2.4E+02 0.0052 31.0 27.3 143 738-908 161-303 (306)
344 PF04111 APG6: Autophagy prote 62.6 1.2E+02 0.0026 33.7 13.1 14 680-693 120-133 (314)
345 COG1222 RPT1 ATP-dependent 26S 62.5 2.9 6.3E-05 46.2 0.5 119 8-127 93-245 (406)
346 KOG0978 E3 ubiquitin ligase in 62.4 3.7E+02 0.0081 33.0 51.3 70 682-762 399-479 (698)
347 PRK10536 hypothetical protein; 62.3 4.6 0.0001 43.1 2.0 18 81-98 74-91 (262)
348 PTZ00424 helicase 45; Provisio 62.2 4 8.8E-05 46.8 1.7 26 71-98 57-82 (401)
349 PF06414 Zeta_toxin: Zeta toxi 61.7 3.6 7.7E-05 42.3 1.0 18 81-98 15-32 (199)
350 PF09304 Cortex-I_coil: Cortex 61.7 1.3E+02 0.0028 27.5 14.8 54 576-632 14-67 (107)
351 PRK07003 DNA polymerase III su 61.5 14 0.0003 45.5 5.9 18 81-98 38-55 (830)
352 PF14992 TMCO5: TMCO5 family 61.4 2.4E+02 0.0052 30.5 15.4 29 535-563 63-91 (280)
353 COG1126 GlnQ ABC-type polar am 61.2 3.7 8E-05 42.4 0.9 14 85-98 32-45 (240)
354 PRK13341 recombination factor 60.9 3.8 8.3E-05 50.6 1.2 21 78-98 49-69 (725)
355 PF08647 BRE1: BRE1 E3 ubiquit 60.8 1.1E+02 0.0024 27.5 10.3 55 501-560 16-70 (96)
356 KOG0163 Myosin class VI heavy 60.6 3.9E+02 0.0086 32.7 19.0 20 79-98 142-161 (1259)
357 PF06048 DUF927: Domain of unk 60.4 4.5 9.8E-05 44.3 1.5 28 70-98 183-210 (286)
358 TIGR01000 bacteriocin_acc bact 60.3 3.4E+02 0.0073 31.8 23.7 22 676-697 287-308 (457)
359 PRK10361 DNA recombination pro 60.0 3.4E+02 0.0075 31.8 20.8 159 728-915 20-192 (475)
360 TIGR01618 phage_P_loop phage n 59.8 4 8.6E-05 42.7 0.9 19 81-99 12-30 (220)
361 COG1125 OpuBA ABC-type proline 59.8 3.8 8.3E-05 43.3 0.8 12 87-98 33-44 (309)
362 smart00787 Spc7 Spc7 kinetocho 59.6 2.8E+02 0.0061 30.7 26.8 22 501-522 69-90 (312)
363 PRK11776 ATP-dependent RNA hel 59.6 5.2 0.00011 47.0 2.0 25 72-98 34-58 (460)
364 cd01126 TraG_VirD4 The TraG/Tr 59.5 3.7 8.1E-05 47.0 0.7 15 84-98 2-16 (384)
365 TIGR03819 heli_sec_ATPase heli 59.2 4.8 0.0001 45.2 1.5 29 69-98 167-195 (340)
366 KOG0739 AAA+-type ATPase [Post 59.1 5.4 0.00012 42.9 1.7 78 49-127 131-226 (439)
367 cd00632 Prefoldin_beta Prefold 58.7 1.4E+02 0.0031 27.1 11.1 38 870-907 66-103 (105)
368 KOG0982 Centrosomal protein Nu 58.7 3.2E+02 0.007 31.1 20.0 187 500-693 213-416 (502)
369 TIGR01242 26Sp45 26S proteasom 58.7 4.1 8.8E-05 46.3 0.9 18 81-98 156-173 (364)
370 PF12775 AAA_7: P-loop contain 58.5 4.9 0.00011 43.6 1.4 26 72-98 25-50 (272)
371 KOG0736 Peroxisome assembly fa 58.4 11 0.00024 45.7 4.3 23 105-127 784-806 (953)
372 PRK15455 PrkA family serine pr 58.3 11 0.00023 44.9 4.2 43 50-97 75-119 (644)
373 KOG1853 LIS1-interacting prote 58.1 2.5E+02 0.0054 29.6 22.4 28 533-560 50-77 (333)
374 PRK04195 replication factor C 58.1 5.6 0.00012 47.1 1.9 30 69-98 26-56 (482)
375 KOG0962 DNA repair protein RAD 57.8 5.8E+02 0.012 33.7 51.4 42 725-766 512-553 (1294)
376 KOG4807 F-actin binding protei 57.8 3.1E+02 0.0068 30.7 28.0 261 500-883 296-581 (593)
377 PRK11192 ATP-dependent RNA hel 57.5 5.7 0.00012 46.2 1.9 25 72-98 31-55 (434)
378 PTZ00361 26 proteosome regulat 57.5 7.1 0.00015 45.3 2.6 16 83-98 219-234 (438)
379 TIGR01005 eps_transp_fam exopo 57.3 4.9E+02 0.011 32.7 24.7 19 288-306 78-96 (754)
380 PF02841 GBP_C: Guanylate-bind 57.3 1.3E+02 0.0028 33.0 12.4 111 498-622 186-297 (297)
381 PF05729 NACHT: NACHT domain 57.2 4.9 0.00011 39.3 1.0 16 83-98 2-17 (166)
382 PLN03025 replication factor C 57.1 5.6 0.00012 44.3 1.6 17 82-98 35-51 (319)
383 PF08172 CASP_C: CASP C termin 57.1 1.6E+02 0.0034 31.6 12.3 43 569-628 84-126 (248)
384 KOG0804 Cytoplasmic Zn-finger 57.0 3.6E+02 0.0077 31.1 16.9 23 680-702 435-457 (493)
385 PF05970 PIF1: PIF1-like helic 57.0 4.1 9E-05 46.2 0.5 34 61-98 6-39 (364)
386 PRK11331 5-methylcytosine-spec 57.0 5.3 0.00011 46.2 1.4 28 331-362 320-347 (459)
387 COG1842 PspA Phage shock prote 56.8 2.6E+02 0.0056 29.4 17.7 44 578-624 31-74 (225)
388 PF07106 TBPIP: Tat binding pr 56.7 1.3E+02 0.0028 30.0 11.2 55 498-562 82-136 (169)
389 cd01120 RecA-like_NTPases RecA 56.7 4.5 9.7E-05 39.3 0.7 15 84-98 2-16 (165)
390 PRK04328 hypothetical protein; 56.7 7 0.00015 41.8 2.2 29 69-97 8-39 (249)
391 cd01127 TrwB Bacterial conjuga 56.7 4.7 0.0001 46.6 1.0 18 81-98 42-59 (410)
392 KOG4360 Uncharacterized coiled 56.5 3.8E+02 0.0083 31.3 15.7 46 863-908 257-302 (596)
393 PF09789 DUF2353: Uncharacteri 56.5 3.2E+02 0.0069 30.3 21.1 203 407-627 4-221 (319)
394 PRK07764 DNA polymerase III su 56.4 6.3 0.00014 49.5 2.0 28 71-98 26-54 (824)
395 PF11559 ADIP: Afadin- and alp 56.2 2E+02 0.0044 28.0 16.1 45 577-624 79-123 (151)
396 PF13173 AAA_14: AAA domain 56.2 5.2 0.00011 37.8 1.0 17 82-98 3-19 (128)
397 TIGR01069 mutS2 MutS2 family p 56.0 92 0.002 39.1 12.0 7 314-320 353-359 (771)
398 PF00735 Septin: Septin; Inte 55.9 3.3 7.2E-05 45.1 -0.4 21 78-98 1-21 (281)
399 TIGR02788 VirB11 P-type DNA tr 55.8 6.3 0.00014 43.6 1.7 28 70-98 134-161 (308)
400 KOG4460 Nuclear pore complex, 55.8 2.2E+02 0.0047 33.4 13.5 29 640-668 654-682 (741)
401 PF13476 AAA_23: AAA domain; P 55.7 4.9 0.00011 40.8 0.8 17 82-98 20-36 (202)
402 cd01123 Rad51_DMC1_radA Rad51_ 55.6 6.7 0.00014 41.3 1.8 30 69-98 4-36 (235)
403 PRK04837 ATP-dependent RNA hel 55.5 6.3 0.00014 45.7 1.8 25 72-98 38-62 (423)
404 KOG2543 Origin recognition com 55.5 5.4 0.00012 44.5 1.1 38 83-143 32-69 (438)
405 PRK00409 recombination and DNA 55.4 1.2E+02 0.0025 38.3 12.8 15 344-358 334-348 (782)
406 cd02021 GntK Gluconate kinase 55.2 5.1 0.00011 38.9 0.8 15 84-98 2-16 (150)
407 PRK15424 propionate catabolism 55.2 17 0.00036 43.5 5.2 32 181-212 322-353 (538)
408 TIGR01359 UMP_CMP_kin_fam UMP- 55.2 5.4 0.00012 40.1 1.0 15 84-98 2-16 (183)
409 KOG1803 DNA helicase [Replicat 55.1 6.1 0.00013 46.5 1.5 17 82-98 202-218 (649)
410 COG0606 Predicted ATPase with 55.0 4.7 0.0001 46.4 0.5 29 78-113 196-224 (490)
411 PRK05703 flhF flagellar biosyn 54.5 5.3 0.00011 46.3 0.9 17 82-98 222-238 (424)
412 PRK00440 rfc replication facto 54.5 6.5 0.00014 43.4 1.6 21 78-98 35-55 (319)
413 TIGR02237 recomb_radB DNA repa 54.4 6.8 0.00015 40.4 1.6 25 74-98 2-29 (209)
414 PRK11448 hsdR type I restricti 54.4 6.4 0.00014 51.1 1.7 27 72-99 425-451 (1123)
415 PRK08118 topology modulation p 54.3 5.7 0.00012 39.7 1.0 15 84-98 4-18 (167)
416 PF09304 Cortex-I_coil: Cortex 54.3 1.8E+02 0.0038 26.7 12.3 24 498-521 12-35 (107)
417 PF02534 T4SS-DNA_transf: Type 54.1 8.5 0.00018 45.3 2.6 17 82-98 45-61 (469)
418 PHA02244 ATPase-like protein 54.1 7.2 0.00016 43.9 1.8 26 71-98 111-136 (383)
419 cd03274 ABC_SMC4_euk Eukaryoti 53.6 5.9 0.00013 41.3 1.0 15 84-98 28-42 (212)
420 PRK06995 flhF flagellar biosyn 53.5 5.6 0.00012 46.6 0.9 17 82-98 257-273 (484)
421 PRK07261 topology modulation p 53.5 6 0.00013 39.7 1.0 15 84-98 3-17 (171)
422 COG1382 GimC Prefoldin, chaper 53.4 2E+02 0.0043 27.0 12.5 44 575-621 67-110 (119)
423 TIGR00376 DNA helicase, putati 53.4 7.1 0.00015 47.7 1.8 16 83-98 175-190 (637)
424 TIGR03346 chaperone_ClpB ATP-d 53.3 16 0.00036 46.4 5.0 131 69-233 577-714 (852)
425 KOG0288 WD40 repeat protein Ti 53.2 2.8E+02 0.0061 31.5 13.6 120 525-645 3-126 (459)
426 PRK10590 ATP-dependent RNA hel 53.2 7.8 0.00017 45.5 2.0 25 72-98 31-55 (456)
427 PF05266 DUF724: Protein of un 53.1 2.7E+02 0.0058 28.5 13.6 58 603-671 125-182 (190)
428 PF12774 AAA_6: Hydrolytic ATP 53.0 7.5 0.00016 41.1 1.7 44 81-124 32-83 (231)
429 PF07139 DUF1387: Protein of u 52.8 1.5E+02 0.0032 32.5 11.2 57 684-765 179-235 (302)
430 PF07693 KAP_NTPase: KAP famil 52.8 13 0.00027 41.3 3.5 20 79-98 18-37 (325)
431 cd00820 PEPCK_HprK Phosphoenol 52.7 6.4 0.00014 36.2 1.0 16 83-98 17-32 (107)
432 PRK00131 aroK shikimate kinase 52.6 6.3 0.00014 39.0 1.0 17 82-98 5-21 (175)
433 cd01850 CDC_Septin CDC/Septin. 52.5 6.2 0.00014 42.9 1.0 21 78-98 1-21 (276)
434 PF14282 FlxA: FlxA-like prote 52.4 74 0.0016 29.2 7.9 23 534-556 18-40 (106)
435 COG2433 Uncharacterized conser 52.0 1.9E+02 0.0041 34.6 12.6 30 531-560 418-447 (652)
436 TIGR00348 hsdR type I site-spe 52.0 8.1 0.00018 47.6 2.0 30 69-99 247-281 (667)
437 TIGR03238 dnd_assoc_3 dnd syst 51.9 11 0.00024 43.8 2.8 27 74-100 19-51 (504)
438 COG5019 CDC3 Septin family pro 51.9 7.5 0.00016 43.2 1.5 21 78-98 20-40 (373)
439 PRK00080 ruvB Holliday junctio 51.6 6.6 0.00014 43.9 1.0 17 82-98 52-68 (328)
440 PF07106 TBPIP: Tat binding pr 51.5 1.2E+02 0.0025 30.3 9.9 27 536-562 80-106 (169)
441 PF07798 DUF1640: Protein of u 51.4 2.7E+02 0.0058 28.0 15.8 7 691-697 142-148 (177)
442 TIGR00635 ruvB Holliday juncti 51.4 7 0.00015 43.0 1.2 16 83-98 32-47 (305)
443 PRK11889 flhF flagellar biosyn 51.3 6.4 0.00014 44.8 0.8 17 82-98 242-258 (436)
444 PRK06067 flagellar accessory p 51.2 10 0.00022 40.0 2.4 32 67-98 8-42 (234)
445 TIGR02902 spore_lonB ATP-depen 51.1 7.7 0.00017 46.4 1.5 44 46-98 60-103 (531)
446 cd00464 SK Shikimate kinase (S 51.1 6.9 0.00015 38.0 1.0 16 83-98 1-16 (154)
447 TIGR01650 PD_CobS cobaltochela 50.9 8.5 0.00018 42.7 1.7 18 81-98 64-81 (327)
448 TIGR01313 therm_gnt_kin carboh 50.8 5.8 0.00012 39.2 0.4 15 84-98 1-15 (163)
449 PF06745 KaiC: KaiC; InterPro 50.5 9.8 0.00021 39.8 2.1 28 71-98 6-36 (226)
450 CHL00181 cbbX CbbX; Provisiona 50.5 6.6 0.00014 43.0 0.8 15 84-98 62-76 (287)
451 COG4559 ABC-type hemin transpo 50.4 8.4 0.00018 39.8 1.4 76 65-140 9-95 (259)
452 TIGR00614 recQ_fam ATP-depende 50.3 9.5 0.00021 44.9 2.2 26 71-98 18-43 (470)
453 PRK12726 flagellar biosynthesi 50.2 6.9 0.00015 44.2 0.9 17 82-98 207-223 (407)
454 PRK09841 cryptic autophosphory 50.2 5.3E+02 0.011 32.3 17.5 59 498-556 270-332 (726)
455 PRK14962 DNA polymerase III su 50.0 7.5 0.00016 45.7 1.2 43 47-98 10-53 (472)
456 TIGR02322 phosphon_PhnN phosph 49.9 7 0.00015 39.2 0.8 16 83-98 3-18 (179)
457 KOG0729 26S proteasome regulat 49.9 8.1 0.00018 40.8 1.3 47 78-124 206-268 (435)
458 PLN03229 acetyl-coenzyme A car 49.8 5.9E+02 0.013 31.5 23.3 40 383-422 433-472 (762)
459 PF10236 DAP3: Mitochondrial r 49.7 8.4 0.00018 42.7 1.5 22 77-98 19-40 (309)
460 TIGR03319 YmdA_YtgF conserved 49.7 5.2E+02 0.011 30.8 22.7 23 675-697 117-139 (514)
461 TIGR03744 traC_PFL_4706 conjug 49.5 5.5 0.00012 50.8 -0.0 19 80-98 474-492 (893)
462 PF10212 TTKRSYEDQ: Predicted 49.2 5.1E+02 0.011 30.6 19.4 27 598-624 476-502 (518)
463 cd01428 ADK Adenylate kinase ( 49.2 7.7 0.00017 39.3 1.0 15 84-98 2-16 (194)
464 KOG0344 ATP-dependent RNA heli 49.2 17 0.00037 42.6 3.8 19 80-98 172-190 (593)
465 TIGR01241 FtsH_fam ATP-depende 49.2 6.9 0.00015 46.5 0.7 17 82-98 89-105 (495)
466 KOG2391 Vacuolar sorting prote 49.1 98 0.0021 34.1 9.1 29 600-628 216-244 (365)
467 PRK11519 tyrosine kinase; Prov 49.1 3.3E+02 0.0072 34.0 15.5 57 500-556 272-332 (719)
468 TIGR02880 cbbX_cfxQ probable R 49.0 7.1 0.00015 42.7 0.8 16 83-98 60-75 (284)
469 COG0630 VirB11 Type IV secreto 48.8 7 0.00015 43.3 0.7 19 80-98 142-160 (312)
470 TIGR03158 cas3_cyano CRISPR-as 48.7 11 0.00023 42.8 2.1 27 72-98 5-31 (357)
471 cd01393 recA_like RecA is a b 48.7 12 0.00026 39.1 2.4 30 69-98 4-36 (226)
472 PRK09361 radB DNA repair and r 48.7 12 0.00026 39.2 2.3 30 69-98 8-40 (225)
473 PF15030 DUF4527: Protein of u 48.4 1.1E+02 0.0024 31.9 8.9 74 840-913 10-83 (277)
474 PRK14721 flhF flagellar biosyn 48.3 7.9 0.00017 44.6 1.0 18 81-98 191-208 (420)
475 PRK14531 adenylate kinase; Pro 48.2 8.2 0.00018 39.1 1.0 16 83-98 4-19 (183)
476 PRK10698 phage shock protein P 48.1 3.5E+02 0.0076 28.4 20.3 44 579-625 32-75 (222)
477 KOG0249 LAR-interacting protei 48.1 6E+02 0.013 31.1 21.3 34 590-623 225-258 (916)
478 TIGR02030 BchI-ChlI magnesium 47.9 8.4 0.00018 43.2 1.1 42 48-98 1-42 (337)
479 PF11932 DUF3450: Protein of u 47.9 3.7E+02 0.0081 28.6 16.6 111 511-655 23-138 (251)
480 COG2204 AtoC Response regulato 47.6 42 0.00091 39.1 6.7 106 78-213 161-267 (464)
481 PF10412 TrwB_AAD_bind: Type I 47.6 7.3 0.00016 44.6 0.6 16 83-98 17-32 (386)
482 KOG1532 GTPase XAB1, interacts 47.4 14 0.0003 39.4 2.5 19 80-98 18-36 (366)
483 PRK06851 hypothetical protein; 47.4 14 0.00029 41.9 2.7 28 71-98 20-47 (367)
484 KOG1265 Phospholipase C [Lipid 47.3 6.9E+02 0.015 31.5 22.9 63 635-697 1076-1145(1189)
485 TIGR03689 pup_AAA proteasome A 47.1 7.9 0.00017 45.7 0.8 16 83-98 218-233 (512)
486 CHL00195 ycf46 Ycf46; Provisio 47.0 8.2 0.00018 45.5 0.9 18 81-98 259-276 (489)
487 CHL00081 chlI Mg-protoporyphyr 46.6 9.6 0.00021 42.8 1.3 44 46-98 12-55 (350)
488 KOG0335 ATP-dependent RNA heli 46.5 8.5 0.00018 44.5 0.9 23 76-100 108-130 (482)
489 PRK13897 type IV secretion sys 46.5 18 0.00039 43.8 3.6 27 335-361 364-390 (606)
490 PRK11634 ATP-dependent RNA hel 46.5 10 0.00022 46.3 1.7 25 72-98 36-60 (629)
491 PF13514 AAA_27: AAA domain 46.5 8.4E+02 0.018 32.3 44.6 47 722-768 786-832 (1111)
492 TIGR02655 circ_KaiC circadian 46.5 22 0.00048 42.0 4.4 29 70-98 7-38 (484)
493 PF00485 PRK: Phosphoribulokin 46.3 8 0.00017 39.5 0.6 15 84-98 2-16 (194)
494 PRK14723 flhF flagellar biosyn 46.3 8.8 0.00019 47.4 1.0 17 82-98 186-202 (767)
495 PHA02624 large T antigen; Prov 46.3 11 0.00024 45.0 1.8 27 72-98 420-448 (647)
496 PF05496 RuvB_N: Holliday junc 46.3 8.8 0.00019 40.2 0.9 44 49-98 22-67 (233)
497 TIGR03263 guanyl_kin guanylate 46.3 9.1 0.0002 38.4 1.0 16 83-98 3-18 (180)
498 TIGR00064 ftsY signal recognit 46.2 9.5 0.00021 41.4 1.2 17 82-98 73-89 (272)
499 KOG0652 26S proteasome regulat 46.2 9.2 0.0002 40.3 1.0 12 84-95 208-219 (424)
500 PRK10416 signal recognition pa 46.0 8.5 0.00018 42.8 0.8 16 83-98 116-131 (318)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-113 Score=984.00 Aligned_cols=819 Identities=42% Similarity=0.566 Sum_probs=699.8
Q ss_pred cCCCCcchhhcCCceEEEEeCCCcceeecC-eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCc
Q 002498 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (915)
Q Consensus 16 vRP~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGK 94 (915)
|||+..+|...||+.|+.+.|+.|+|.+++ .+|+||+||++. +.|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~-~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDL-ESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccCc-hHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999976 689999999864 559999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCc-cccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccccCCCCCccccCCCC
Q 002498 95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (915)
Q Consensus 95 T~Tm~g~~~~~~~-~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (915)
||||++++..... .|+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 9999988654444 59999999999999998654 7899999999999999999998643 234
Q ss_pred CceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCC
Q 002498 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (915)
Q Consensus 174 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~~~ 253 (915)
++.+++ +.|++.+.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||+|++++......
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 578888 88999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhcCCC
Q 002498 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (915)
Q Consensus 254 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT~lL~dsLgG 333 (915)
...++++|||||||||||.++|++.|+|++||++||.+|++|||||++|++.++ +.|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 336789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 002498 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (915)
Q Consensus 334 ns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~ 413 (915)
|+.|+||+||||++.|+.||++||+||+||++|+|+|++|.|+...+|..|+.+|+.|+.+|....+.....++..+..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999866544455789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC-Cccccch------------hhHhhhhcccCCccchhhhc---cc
Q 002498 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKS------------DGLKRGFQSIDSSDYQMDEA---VS 477 (915)
Q Consensus 414 i~~L~~e~~~L~~eL~e~~~~~~~l~e~~~~~q~~-~~~~~k~------------~eLe~~l~~~~~~d~~l~e~---~~ 477 (915)
+..++..+..+..++.+....|.....+...++.. +.+.... ....+....+.....+++.. ..
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 99999999999999988888775544443333211 0000000 00111100011000111110 00
Q ss_pred -----CCCChhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 478 -----DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (915)
Q Consensus 478 -----~~~~~~le~ee~~~~~~~~q~~l~~el~eL~~~Le~kE~~~~kl~~--~~~~~~~~~~~~ki~~Le~ei~~le~e 550 (915)
.+.++........+.+...+.++..++.+++.+|+.++..+++... ......+.+|+.....|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 1222222233556778888889999999999999999999998775 456678899999999999999999999
Q ss_pred HHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (915)
Q Consensus 551 ~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~ 630 (915)
++++..++..+.. ...|+.++|.++|+.||.+++.|++....+..|.+.+.+.+.....|..+|..+|.++|+|++
T Consensus 525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988642 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 002498 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (915)
Q Consensus 631 ~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~ 710 (915)
+|++++++|+.|+...+||.++|++++++.++++.+++...++|..||+|+++|+.+++++|++++..++..+... ..
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~--~~ 678 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQ--VT 678 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887542211 11
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCC
Q 002498 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLS 790 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~ 790 (915)
-+.++ ........|+..|+++...+.+++.+|..+++.|+.+..++..++...
T Consensus 679 ~~~~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~----------------------- 731 (913)
T KOG0244|consen 679 LGDNG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG----------------------- 731 (913)
T ss_pred hhhcC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 11111 223567999999999999999999999999999999999999887742
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH-------
Q 002498 791 PNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLW------- 863 (915)
Q Consensus 791 ~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~------- 863 (915)
...|..|+..++....+|.++...+..+..+..... +|+++.++.+|++.+.++|+.++..+.+..
T Consensus 732 ----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~~---~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~r 804 (913)
T KOG0244|consen 732 ----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIKM---RWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGSR 804 (913)
T ss_pred ----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHHH---HHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 267788889999999999999998888877765333 999999999999999999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALAS 910 (915)
Q Consensus 864 ~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~ 910 (915)
+....+.++..++...+..++..+.+..+...+..-..+....+...
T Consensus 805 e~~~~~~~l~~kl~~~q~~~rk~e~~~~~~v~e~~~~~~~~~~~~~~ 851 (913)
T KOG0244|consen 805 EKGIKKWDLTQKLLDEQVNLRKDEVQALGVVPEHPVLLSGCKGGILK 851 (913)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666778888888888888888888888766666666665555443
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-88 Score=791.78 Aligned_cols=360 Identities=42% Similarity=0.659 Sum_probs=315.6
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee--------cCeEEEeceeecCCCCCccccccccchhhHHhhhc
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ 78 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~ 78 (915)
..+|+|+|||||++.+|....++.+|.+.+....|.+ ..++|+||+||||.. +|.+||+.+|.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes-~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPES-QQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcch-hHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999988888877776664333433 146899999999864 5999999999999999999
Q ss_pred CCCceEEeeccCCCCcccccCCCCC-----CCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcc
Q 002498 79 GYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm~g~~~-----~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (915)
|||||||||||||+||||||.|+.. .+...|||||++.+||..++.. +.+|+|+|||+|+|||+|+|||+|..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCcc
Confidence 9999999999999999999999643 4677899999999999999884 47999999999999999999999876
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002498 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (915)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (915)
... ....+.+.+++. +..||++|.|+.+++|+++.|++.+|.+|...|.+++|.||.+|||||+||+|+
T Consensus 205 ~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsIt 273 (1041)
T KOG0243|consen 205 TSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSIT 273 (1041)
T ss_pred ccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEE
Confidence 321 111122233332 668899999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCC
Q 002498 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (915)
Q Consensus 234 v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~ 313 (915)
|+-.... + .++.-+++|||+||||||||-..++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 274 vhike~t---------~--~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s----- 337 (1041)
T KOG0243|consen 274 VHIKENT---------P--EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS----- 337 (1041)
T ss_pred EEEecCC---------C--cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC-----
Confidence 9865321 1 13456789999999999999999999999999999999999999999999999875
Q ss_pred CcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccc-hHHHHHHHHHHHHHH
Q 002498 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYLQ 392 (915)
Q Consensus 314 ~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~-~~~i~~L~~ei~~Lk 392 (915)
+|||||+|||||||||||||.++|+|||||||+..+++|||+||.||.||++|+|+|.+|+-.. ...+..|-.+|..|+
T Consensus 338 ~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK 417 (1041)
T KOG0243|consen 338 GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLK 417 (1041)
T ss_pred CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999997433 456788999999999
Q ss_pred HHHH
Q 002498 393 AELC 396 (915)
Q Consensus 393 ~eL~ 396 (915)
.+|.
T Consensus 418 ~dl~ 421 (1041)
T KOG0243|consen 418 RDLA 421 (1041)
T ss_pred HHHH
Confidence 9987
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-92 Score=808.50 Aligned_cols=363 Identities=41% Similarity=0.630 Sum_probs=326.8
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeec-----CeEEEeceeecCCC------CCccccccccchhhHHh
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGG------SPSSAMFGECVAPLVDG 75 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-----~~~f~FD~Vf~~~~------~~q~~vy~~~~~~lv~~ 75 (915)
..+|+|+|||||++.+|....+..+|.+..+..++..+ ...|+||++||+.+ .+|..||+.++.|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999988777666665555444432 25699999999654 34779999999999999
Q ss_pred hhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhc-cccceeEEEEeheehhhhhhhhccC-Ccc
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDLLD-SVS 153 (915)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIy~e~v~DLL~-~~~ 153 (915)
+|.|||+||||||||||||||||+| +..+.++|||||+|++||.+|... ..+..|.|.|||+|||||+|+|||+ |.+
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~ 161 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKS 161 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCC
Confidence 9999999999999999999999999 446788999999999999999874 3468899999999999999999998 432
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002498 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (915)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (915)
+++|++||+|-.|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||.+|||||+||+|.
T Consensus 162 ------------------kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIv 223 (1221)
T KOG0245|consen 162 ------------------KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIV 223 (1221)
T ss_pred ------------------CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhcc--CC
Q 002498 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RR 311 (915)
Q Consensus 234 v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~--~~ 311 (915)
+.|..... +.+-...++|+|+|||||||||+..+|+.|+|+|||.+||+||++||.||+||++..+ .+
T Consensus 224 ftQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ 293 (1221)
T KOG0245|consen 224 FTQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKK 293 (1221)
T ss_pred EEeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCC
Confidence 99976432 1113467899999999999999999999999999999999999999999999998653 33
Q ss_pred CCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHH
Q 002498 312 EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYL 391 (915)
Q Consensus 312 ~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~L 391 (915)
+..+||||||.|||||+++|||||+|+|||++||++.||+|||+|||||+|||.|+|+|+||+|+....|..|++|+..|
T Consensus 294 ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rL 373 (1221)
T KOG0245|consen 294 KSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARL 373 (1221)
T ss_pred CCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 002498 392 QAELCAR 398 (915)
Q Consensus 392 k~eL~~~ 398 (915)
+..|...
T Consensus 374 ksll~~~ 380 (1221)
T KOG0245|consen 374 KSLLRAQ 380 (1221)
T ss_pred HHHHhcc
Confidence 9998743
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-92 Score=797.35 Aligned_cols=356 Identities=46% Similarity=0.689 Sum_probs=328.3
Q ss_pred CCCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------cCeEEEeceeecCCCCCccccccccchhhHHhh
Q 002498 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (915)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~ 76 (915)
.+.+|+|+||+||+++.+...++..++.+.+....+.+ .+++|+||+||++++ +|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~s-tQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDS-TQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCC-CHHHHHHHHhHHHHHHH
Confidence 35789999999999999998888888877766655544 346899999998754 59999999999999999
Q ss_pred hcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCccccc
Q 002498 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (915)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 156 (915)
|.|||+||||||||||||||||.|+ ++...|||||+|.+||..|........|.|+|||+|||||.|+|||+|.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999997 47889999999999999999976666899999999999999999999854
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002498 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (915)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~ 236 (915)
.+.+.|+++|..|+||.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 25799999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcc
Q 002498 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (915)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~i 316 (915)
.... .+.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||++|+++++ .||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3221 1223567789999999999999999999999999999999999999999999999875 399
Q ss_pred cCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHH
Q 002498 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (915)
Q Consensus 317 pyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~eL~ 396 (915)
||||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|+|+||.|+....+..|+.+|..|+.++.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H
Q 002498 397 A 397 (915)
Q Consensus 397 ~ 397 (915)
.
T Consensus 367 ~ 367 (574)
T KOG4280|consen 367 P 367 (574)
T ss_pred c
Confidence 4
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.1e-86 Score=721.97 Aligned_cols=337 Identities=43% Similarity=0.687 Sum_probs=310.8
Q ss_pred CCCCCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeecC----eEEEeceeecCCCCCccccccccchhhHHhhhcC
Q 002498 4 ASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (915)
Q Consensus 4 ~~~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G 79 (915)
.++.|+|+|+||+||++..|...+.....-+.++...+.+.+ .+|.||+||.|++ +|.+||..++.|+|++||.|
T Consensus 3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pna-tQe~Vy~~~a~~Iv~dVL~G 81 (607)
T KOG0240|consen 3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNA-TQEDVYEFAAKPIVDDVLLG 81 (607)
T ss_pred CCCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCc-cHHHHHHHHHHHHHHHHhcc
Confidence 346899999999999999998777666555555555666665 8999999999865 59999999999999999999
Q ss_pred CCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccc
Q 002498 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (915)
||+||||||||||||||||.|...++...|||||++++||.+|.+.....+|.|.|||||||+|+|+|||+|..
T Consensus 82 YNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k------ 155 (607)
T KOG0240|consen 82 YNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK------ 155 (607)
T ss_pred cceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc------
Confidence 99999999999999999999976667778999999999999999988889999999999999999999999743
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002498 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (915)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 239 (915)
.++.|++|.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|.+.
T Consensus 156 -------------~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~ 222 (607)
T KOG0240|consen 156 -------------TNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV 222 (607)
T ss_pred -------------CCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCC
Q 002498 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (915)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyr 319 (915)
. +...++|+|.||||||||+++++|+.|..+.|+.+||+||.|||+||++|+++.+ +|||||
T Consensus 223 e--------------~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~----shipYR 284 (607)
T KOG0240|consen 223 E--------------DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK----SHIPYR 284 (607)
T ss_pred c--------------chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC----CCCcch
Confidence 3 2567899999999999999999999999999999999999999999999999853 699999
Q ss_pred CCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccch
Q 002498 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLIS 378 (915)
Q Consensus 320 dSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~ 378 (915)
||||||||+|+|||||+|++|+|+||+..|..||.+||+|++||+.|+|.|.+|.....
T Consensus 285 DSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~ 343 (607)
T KOG0240|consen 285 DSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTA 343 (607)
T ss_pred hhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhH
Confidence 99999999999999999999999999999999999999999999999999999976544
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.8e-84 Score=762.57 Aligned_cols=355 Identities=41% Similarity=0.615 Sum_probs=307.0
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeecCeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEe
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~a 86 (915)
+++|+|+|||||+...| .+.. ++... .+..+.+..+.|+||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E--~g~~-iV~~~-s~dsl~I~~qtFtFD~VFdp~a-TQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--EGEM-IVQKM-SNDSLTINGQTFTFDSIADPES-TQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--CCCe-eEEEc-CCCeEEEeCcEEeCCeeeCCCC-CHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 57999999999999886 3333 33333 3345677889999999999865 589999999999999999999999999
Q ss_pred eccCCCCcccccCCCCC-------CCCccccHHHHHHHHHHHHHhc-----cccceeEEEEeheehhhhhhhhccCCccc
Q 002498 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (915)
Q Consensus 87 yGqtgSGKT~Tm~g~~~-------~~~~~Glipr~~~~lF~~i~~~-----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~ 154 (915)
||||||||||||+|+.. .+..+|||||++++||..|... .....|.|+|||+|||||.|||||+|..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999653 2467899999999999999653 2346799999999999999999998632
Q ss_pred ccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002498 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (915)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v 234 (915)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCC
Q 002498 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (915)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (915)
++..... .+.......|+|+|||||||||.+++++.|.+++|+++||+||++||+||.+|+.....++..
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8754321 111234578999999999999999999999999999999999999999999999765444567
Q ss_pred cccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHH
Q 002498 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAE 394 (915)
Q Consensus 315 ~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~e 394 (915)
||||||||||+||+|+|||||+|+|||||||+..++.||++||+||+||+.|+|+|++|.... ..+..|+..|..|+.+
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~-~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNFLREVIRQLRDE 461 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998642 3344555556666655
Q ss_pred HH
Q 002498 395 LC 396 (915)
Q Consensus 395 L~ 396 (915)
|.
T Consensus 462 L~ 463 (1320)
T PLN03188 462 LQ 463 (1320)
T ss_pred HH
Confidence 54
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.3e-81 Score=697.45 Aligned_cols=361 Identities=42% Similarity=0.631 Sum_probs=322.4
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee-----------cCeEEEeceeecCCC------CCccccccccc
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-----------~~~~f~FD~Vf~~~~------~~q~~vy~~~~ 69 (915)
+..|+|+|||||++.+|..-...+.+.|..+...+.+ ++++|.||++|++.+ +.|+.||...+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4689999999999999987666555656554443332 357999999998654 34789999999
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhcc-ccceeEEEEeheehhhhhhhhc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIy~e~v~DL 148 (915)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... ....|.|.|||+|||||++|||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999885 5569999999999999998754 3567999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEE
Q 002498 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (915)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~ 228 (915)
|+|... +..+.+++++--|+||.||+...|+|++++-.+|..|+++|+++.|+||..|||||+
T Consensus 160 LdPk~s-----------------sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKGS-----------------SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCCC-----------------cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 998652 367999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhc
Q 002498 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (915)
Q Consensus 229 if~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~ 308 (915)
||.|.|.|.-... .++. .....|+|.+||||||||+.++|+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~D~----ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYDL----KTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEecc----ccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999865321 1121 23357999999999999999999999999999999999999999999999865
Q ss_pred cC-CCCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHHHHHHHH
Q 002498 309 KR-REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (915)
Q Consensus 309 ~~-~~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~e 387 (915)
.. ++..+||||||.|||||+|+|||||+|+||+||||+++||+|||+|||||.|||+|+|..+||.|+....+..||.+
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 43 24569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 002498 388 LKYLQAELCA 397 (915)
Q Consensus 388 i~~Lk~eL~~ 397 (915)
+..|+..|..
T Consensus 373 ve~lr~qL~~ 382 (1714)
T KOG0241|consen 373 VEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-81 Score=735.40 Aligned_cols=348 Identities=45% Similarity=0.694 Sum_probs=304.7
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---c-------CeEEEeceeecCCCCCccccccccchhhHHhh
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---G-------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---~-------~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~ 76 (915)
...|.|+|||||+++++...+....+ ...++..+.. . ...|.||+||+++++ |.+||+.++.|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDW-HCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccce-EecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 46899999999999985433322222 2222221111 0 378999999998765 8999999999999999
Q ss_pred hcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCccccc
Q 002498 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (915)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 156 (915)
+.|||+||||||||||||||||.|. ...|||||.++.+||..|.... +..|.|.|||+|||||.|+|||+|..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999884 5569999999999999999876 78999999999999999999998743
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002498 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (915)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~ 236 (915)
+++.|+||+.+|++|+||++.+|.|+++++.+|..|..+|+++.|.+|..|||||+||+|.|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcc
Q 002498 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (915)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~i 316 (915)
..+... . ..|+|+|||||||||+.+|++.|.|++||++||+||++||+||++|+++... .||
T Consensus 220 ~~~~~~--------------~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~---~hi 281 (675)
T KOG0242|consen 220 RGREAS--------------S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRP---RHI 281 (675)
T ss_pred cccccc--------------c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHcccccc---CCC
Confidence 654220 1 6789999999999999999999999999999999999999999999998542 399
Q ss_pred cCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccccchHHH-HHHHHHHHHHHHHH
Q 002498 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYLQAEL 395 (915)
Q Consensus 317 pyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d~~~~~i-~~L~~ei~~Lk~eL 395 (915)
||||||||||||++|||||+|+|||||+|+..+++||.+||+||+||++|++++.+|.-.....+ ..++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976555444 33457788888887
Q ss_pred HH
Q 002498 396 CA 397 (915)
Q Consensus 396 ~~ 397 (915)
..
T Consensus 362 ~~ 363 (675)
T KOG0242|consen 362 ER 363 (675)
T ss_pred Hh
Confidence 64
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3.3e-80 Score=686.75 Aligned_cols=325 Identities=42% Similarity=0.602 Sum_probs=289.4
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeec--CeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEe
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~a 86 (915)
+|+|+|||||+...|...+...|+.+.+....+..+ .+.|.||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNT-NQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCC-CHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 699999999999999876777788766544433332 37999999999865 589999999999999999999999999
Q ss_pred eccCCCCcccccCCCCCC-----CCccccHHHHHHHHHHHHHhc----cccceeEEEEeheehhhhhhhhccCCcccccc
Q 002498 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETL----RHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (915)
Q Consensus 87 yGqtgSGKT~Tm~g~~~~-----~~~~Glipr~~~~lF~~i~~~----~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (915)
||||||||||||+|+... ...+|||||++++||..+... .....|.|.|||+|||||.|||||+|..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997653 247899999999999998753 2356799999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002498 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (915)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~ 237 (915)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999876
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCccc
Q 002498 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (915)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (915)
.... .......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+..... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 4321 112457899999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 318 yrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||.||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.1e-79 Score=682.91 Aligned_cols=322 Identities=47% Similarity=0.693 Sum_probs=292.3
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCccee----------------ecCeEEEeceeecCCCCCccccccccchhh
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~----------------~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~l 72 (915)
+|+|+|||||+.+.|...+...||.+.++...+. ...+.|+||+||++++ +|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETS-TQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCC-CHHHHHHHHHHHH
Confidence 5899999999999998888888887765432111 1247899999999865 4899999999999
Q ss_pred HHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCc
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~ 152 (915)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||..+........|.|+|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999964 56999999999999999987767899999999999999999999863
Q ss_pred ccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002498 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (915)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i 232 (915)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCC
Q 002498 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (915)
Q Consensus 233 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~ 312 (915)
+|.+..... +.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+.... .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999865421 123467889999999999999999999999999999999999999999999998753 2
Q ss_pred CCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 313 ~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.2e-77 Score=667.75 Aligned_cols=326 Identities=36% Similarity=0.590 Sum_probs=287.0
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee-----------------cCeEEEeceeecCCCCCccccccccchh
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-----------------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~ 71 (915)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||++++ +|++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-tq~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNT-TQKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCC-CHHHHHHHHHHH
Confidence 799999999999999877777787765433 2221 246899999999865 599999999999
Q ss_pred hHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCC
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 151 (915)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|.|||+|||||.|||||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 6799999999999999866 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002498 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (915)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 231 (915)
.... .....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012457999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCC
Q 002498 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (915)
Q Consensus 232 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~ 311 (915)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99997653211 00 1112356778999999999999999999999999999999999999999999999865433
Q ss_pred -CCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 312 -~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.2e-77 Score=670.28 Aligned_cols=337 Identities=45% Similarity=0.669 Sum_probs=299.5
Q ss_pred CCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------cCeEEEeceeecCCC------CCccccccccchhh
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGG------SPSSAMFGECVAPL 72 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~------~~q~~vy~~~~~~l 72 (915)
++|+|+|||||+...|...+...|+.+.+....+.. ....|+||+||++.. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999988888888877653333322 236899999998760 45899999999999
Q ss_pred HHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccc-cceeEEEEeheehhhhhhhhccCC
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~ 151 (915)
|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|.|||+|||||.|||||++
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 9999999999999999999999999999644 689999999999999987544 578999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002498 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (915)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~ 231 (915)
.. ....++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 158 ~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~ 221 (356)
T cd01365 158 KK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221 (356)
T ss_pred Cc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEE
Confidence 53 12357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccC-
Q 002498 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR- 310 (915)
Q Consensus 232 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~- 310 (915)
|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.....
T Consensus 222 l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~ 291 (356)
T cd01365 222 IVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291 (356)
T ss_pred EEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 99998654321 1134667899999999999999999999999999999999999999999999986532
Q ss_pred --CCCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 002498 311 --REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (915)
Q Consensus 311 --~~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn 373 (915)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+++++|+|.|++|
T Consensus 292 ~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred ccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=9.4e-77 Score=665.34 Aligned_cols=333 Identities=44% Similarity=0.693 Sum_probs=301.2
Q ss_pred CCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee--------cCeEEEeceeecCCCCCccccccccchhhHHhhhcC
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G 79 (915)
++|+|+|||||+...|...++..++.+.....+|.+ ..+.|+||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA-DQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888766566655 357899999999865 59999999999999999999
Q ss_pred CCceEEeeccCCCCcccccCCCCCC--------CCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCC
Q 002498 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~--------~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~ 151 (915)
||+||||||+|||||||||+|+... ...+|||||++.+||..+... ...|.|+|||+|||+|.|||||+|
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999874 678999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceEEec--CCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002498 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (915)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 229 (915)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 53 12457999999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhcc
Q 002498 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (915)
Q Consensus 230 f~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~ 309 (915)
|+|+|.+..... ........|+|+|||||||||..+.++.|.+++|+..||+||.+|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999864321 11234567999999999999999999999999999999999999999999998764
Q ss_pred CCCCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccccc
Q 002498 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (915)
Q Consensus 310 ~~~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~d 375 (915)
.|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+||++|++|+|.|.+|.+
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999964
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.3e-76 Score=660.36 Aligned_cols=337 Identities=63% Similarity=0.965 Sum_probs=305.3
Q ss_pred CCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeec-CeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEe
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~a 86 (915)
++|+|+||+||+...|...++..|+.+.++.+++.++ .+.|+||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPST-SQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCC-CHHHHHHHHHHHHHHHHhCCCccceee
Confidence 4899999999999999888889999999998888887 68999999999865 599999999999999999999999999
Q ss_pred eccCCCCcccccCCCCCC---CCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccccCCC
Q 002498 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (915)
Q Consensus 87 yGqtgSGKT~Tm~g~~~~---~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (915)
||+|||||||||+|+... ...+|||||++++||..+........|.|.|||+|||||.|||||.+..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999997642 5789999999999999999876668999999999999999999998743
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002498 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (915)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~ 243 (915)
...+++.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12457999999999999999999999999999999999999999999999999999999999999987653210
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002498 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (915)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkL 323 (915)
. ....+.......|+|+||||||||+.+++++.|.+++|+.+||+||.+|++||.+|+.+.+ +..|||||+|+|
T Consensus 224 ~----~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 A----PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred c----cccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 0 0112234567899999999999999999999999999999999999999999999997653 346999999999
Q ss_pred hhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhccc
Q 002498 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (915)
Q Consensus 324 T~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~ik 367 (915)
|+||+|+|||||+|+||+||||+..+++||++||+||+||++||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2e-75 Score=648.56 Aligned_cols=323 Identities=48% Similarity=0.711 Sum_probs=293.4
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------cCeEEEeceeecCCCCCccccccccchhhHHhhhcC
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G 79 (915)
+|+|+|||||+.+.|...++..++.+.+...++.+ ..+.|.||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS-TQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCc-cHHHHHHHHHHHHHHHHhCC
Confidence 79999999999999988888888877766655544 246799999999865 58999999999999999999
Q ss_pred CCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccc
Q 002498 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (915)
||+||||||+|||||||||+|+......+|||||++++||..+.... ...|.|.|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 99999999999999999999987767789999999999999998754 37899999999999999999998643
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002498 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (915)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 239 (915)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 24689999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCC
Q 002498 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (915)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyr 319 (915)
.. +.......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|+.++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 21 11245678999999999999999999999999999999999999999999998754 2599999
Q ss_pred CCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 320 dSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2e-75 Score=645.03 Aligned_cols=307 Identities=42% Similarity=0.623 Sum_probs=277.2
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee-------------cCeEEEeceeecCCCCCccccccccchhhHHh
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-------------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~ 75 (915)
+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||++.++ |++||+.++.|+|++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~-q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVT-NEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCC-HHHHHHHHHHHHHHH
Confidence 79999999999999987666666655443 22222 1478999999998654 899999999999999
Q ss_pred hhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccc
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (915)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 155 (915)
+++|||+||||||||||||||||+|+. ..+|||||++++||..+.... ..|.|.|||+|||||.|+|||+|.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 999999999999999999999999964 669999999999999998754 689999999999999999999762
Q ss_pred cccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEE
Q 002498 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (915)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~ 235 (915)
.++.|++++.++++|.|+++++|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.
T Consensus 152 -----------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 152 -----------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred -----------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccC-CCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCC
Q 002498 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (915)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~-~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~ 314 (915)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.++ .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7532 3468999999999999998765 578999999999999999999999999764 4
Q ss_pred cccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 315 ~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.7e-75 Score=645.90 Aligned_cols=320 Identities=44% Similarity=0.709 Sum_probs=294.3
Q ss_pred CCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeec----CeEEEeceeecCCCCCccccccccchhhHHhhhcCCCce
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~t 83 (915)
.+|+|+|||||+.+.|...+...|+.+.++ ..|.+. .+.|.||+||++++ +|++||+.++.|+|+++++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNT-TQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHHHcCccce
Confidence 489999999999999977778888877655 455554 57999999999865 599999999999999999999999
Q ss_pred EEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccccCCC
Q 002498 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (915)
|||||+|||||||||+|+......+|||||++++||..+........|.|.+||+|||+|.|+|||+|.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999987777889999999999999999999864
Q ss_pred CCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002498 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (915)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~ 243 (915)
...+.+++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 246889999999999999999999999999999999999999999999999999999999999886432
Q ss_pred CCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcc
Q 002498 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (915)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkL 323 (915)
......|+|+|||||||||..++++.|.+++|+..||+||.+|++||.+|+.+++ .|||||||+|
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1345789999999999999999999999999999999999999999999997652 5999999999
Q ss_pred hhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 324 T~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=5.4e-74 Score=633.40 Aligned_cols=308 Identities=39% Similarity=0.617 Sum_probs=277.7
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCc----ceee-------cCeEEEeceeecCCCCCccccccccchhhHHhhh
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~----~~~~-------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l 77 (915)
+|+|+|||||+.+.| .+...|+.+.+.++ .+.+ ..+.|.||+||++++ +|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTEC-TQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCC-CHHHHHHHHHHHHHHHHh
Confidence 589999999999888 34456776654422 2322 246899999999865 599999999999999999
Q ss_pred cCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 157 (915)
+|||+||||||||||||||||+|++ ..+|||||++++||..+... ...|.|.+||+|||+|.|||||+|..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~---- 148 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAK---- 148 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCC----
Confidence 9999999999999999999999964 46999999999999988764 36799999999999999999998642
Q ss_pred cccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002498 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (915)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~ 237 (915)
..+.|++++.++++|.|+++++|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 149 ---------------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 149 ---------------KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred ---------------CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCccc
Q 002498 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (915)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ip 317 (915)
.. .....|+|+|||||||||..+++..|.+++|+..||+||.+|++||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 22578999999999999999999999999999999999999999999998754 4999
Q ss_pred CCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 318 yrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
||+|+||+||+|+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.5e-73 Score=631.48 Aligned_cols=317 Identities=41% Similarity=0.674 Sum_probs=284.7
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee-c---CeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceE
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-G---THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~-~---~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti 84 (915)
+|+|+|||||+...|. .+...++.+..+ ..+.+ + ...|.||+||++++ +|++||+.++.|+|++++.|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGES-TNREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCC-CHHHHHHHHHHHHHHHHHCCCceeE
Confidence 6999999999999886 344556666655 34443 2 58999999999865 4899999999999999999999999
Q ss_pred EeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcccccccccCCCC
Q 002498 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (915)
Q Consensus 85 ~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~ 164 (915)
||||+|||||||||+|+. ..+|||||++++||..+.... ...|.|.|||+|||||.|||||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999964 668999999999999997754 66899999999999999999998743
Q ss_pred CccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCC
Q 002498 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (915)
Q Consensus 165 ~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~ 244 (915)
.++.+++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcch
Q 002498 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (915)
Q Consensus 245 ~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT 324 (915)
+.......|+|+|||||||||..+.+ .|.+++|+.+||+||.+|++||.+|+.+.. ..|||||+||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12346778999999999999999988 899999999999999999999999998752 359999999999
Q ss_pred hhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 325 ~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.6e-73 Score=633.00 Aligned_cols=319 Identities=39% Similarity=0.589 Sum_probs=280.2
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------------cCeEEEeceeecCCCCCccccccccchhhH
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv 73 (915)
+|+|+||+||+...+.. ++.+.+.+.++.+ ..+.|+||+||++ ++|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~--~~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN--ASQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC--CCHHHHHHHHHHHHH
Confidence 58999999999874421 2223322222111 2368999999997 459999999999999
Q ss_pred HhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCcc
Q 002498 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (915)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (915)
+++|+|||+||||||+|||||||||+|+..+...+|||||++++||..++.. .+..|.|+|||+|||||.|||||+|..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999998766678999999999999999874 466899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002498 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (915)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~ 233 (915)
.. ....+++.|++++.++++|.|+++++|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCC
Q 002498 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (915)
Q Consensus 234 v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~ 313 (915)
|.+..... .......|+|+|||||||||..++++.|..++|+.+||+||.+|++||.+|+.+. .
T Consensus 220 v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecCC------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 99864321 1246678999999999999999999999999999999999999999999999765 2
Q ss_pred CcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 314 ~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.1e-71 Score=619.67 Aligned_cols=321 Identities=42% Similarity=0.668 Sum_probs=288.0
Q ss_pred CCCeEEEEEcCCCCcchhhcCCceEEEEeCCC-cceeec-----CeEEEeceeecCCCCCccccccccchhhHHhhhcCC
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (915)
Q Consensus 7 ~~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~~~~~-----~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~ 80 (915)
.++|+|+|||||+...+. .....++.+.++. ..+.+. .+.|+||+||++++ +|++||+. +.|+|+++++||
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~-v~p~v~~~~~G~ 77 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDA-SQEDVFEE-VSPLVQSALDGY 77 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCC-CHHHHHHH-HHHHHHHHhCCC
Confidence 378999999999998875 3344556555553 344432 36899999998765 58999997 699999999999
Q ss_pred CceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccc-cceeEEEEeheehhhhhhhhccCCcccccccc
Q 002498 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~ 159 (915)
|+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|.+||+|||+|.|+|||++..
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------ 148 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------ 148 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc------
Confidence 9999999999999999999964 6699999999999999988654 67899999999999999999998743
Q ss_pred cCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002498 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (915)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~ 239 (915)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+...
T Consensus 149 ----------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~ 218 (329)
T cd01366 149 ----------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNL 218 (329)
T ss_pred ----------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcC
Confidence 1246799999999999999999999999999999999999999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCC
Q 002498 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (915)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyr 319 (915)
. +.....|+|+||||||||+..++++.|.+++|+.+||+||.+|++||.+|+.+. .|||||
T Consensus 219 ~--------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~-----~~ipyr 279 (329)
T cd01366 219 Q--------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKD-----SHVPYR 279 (329)
T ss_pred C--------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCC-----CcCCCc
Confidence 2 245678999999999999999999999999999999999999999999998763 599999
Q ss_pred CCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccC
Q 002498 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQN 368 (915)
Q Consensus 320 dSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~ikn 368 (915)
+|+||+||+|+||||++|+||+||||...+++||++||+||++|+.|++
T Consensus 280 ~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 280 NSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred ccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999999999987
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5e-71 Score=616.69 Aligned_cols=327 Identities=49% Similarity=0.757 Sum_probs=298.2
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCc-ceee-------cCeEEEeceeecCCCCCccccccccchhhHHhhhcCC
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~-~~~~-------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~ 80 (915)
+|+|+|||||+...|..++...|+.+.+..+ .+.+ ....|+||+||++++ +|++||+.++.|+|++++.|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATA-SQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCC-ChHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888888888876653 3433 237899999998765 589999999999999999999
Q ss_pred CceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCccccccccc
Q 002498 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~ 160 (915)
|+|||+||+|||||||||+|+ ...+||||+++++||..+........|.|+|||+|||+|.|+|||+|.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999985 456899999999999999887667899999999999999999999863
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002498 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (915)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~ 240 (915)
+.++.|++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 256899999999999999999999999999999999999999999999999999999999999976321
Q ss_pred ccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCC
Q 002498 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (915)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrd 320 (915)
........|+|+||||||+||..+.++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 12356789999999999999999999999999999999999999999999999753 246999999
Q ss_pred CcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccccc
Q 002498 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (915)
Q Consensus 321 SkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn 373 (915)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|.|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.8e-72 Score=654.66 Aligned_cols=324 Identities=40% Similarity=0.622 Sum_probs=286.5
Q ss_pred CCeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------cCeEEEeceeecCCCCCccccccccchhhHHhhhc
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ 78 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~ 78 (915)
|+|+|+|||||+.+.+....+...+ ..+....+.+ ..+.|.||+||+|.++ |++||.. +.|+|.+||+
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~lD 390 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSALD 390 (670)
T ss_pred cCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHhc
Confidence 7999999999999988654222222 1221111111 1235999999998765 8999988 8999999999
Q ss_pred CCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccCCccccccc
Q 002498 79 GYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 158 (915)
|||+||||||||||||||||.|+ .+..+|||||++.+||..+......+.|.+.+||+|||||.|+|||++..
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~----- 463 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES----- 463 (670)
T ss_pred CcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc-----
Confidence 99999999999999999999886 56679999999999999999988899999999999999999999998643
Q ss_pred ccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeee
Q 002498 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (915)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~ 238 (915)
....+.|+.++++.++|.|++.++|.+.+++..++..|..+|++++|.+|.+|||||+||+|+|....
T Consensus 464 ------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~ 531 (670)
T KOG0239|consen 464 ------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN 531 (670)
T ss_pred ------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc
Confidence 12468999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccC
Q 002498 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (915)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipy 318 (915)
. .......+.|+|||||||||++++++.|.|++|+.+||+||++||.||.+|+.. .+||||
T Consensus 532 ~--------------~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiPy 592 (670)
T KOG0239|consen 532 E--------------LTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIPY 592 (670)
T ss_pred c--------------CcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCcc
Confidence 1 135667899999999999999999999999999999999999999999999984 359999
Q ss_pred CCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccc
Q 002498 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVV 372 (915)
Q Consensus 319 rdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~v 372 (915)
||||||+||+|+|||+++|+|+++|||...++.||+++|+||.|++.+...|..
T Consensus 593 RNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 593 RNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred cccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999887654
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-69 Score=588.19 Aligned_cols=323 Identities=36% Similarity=0.571 Sum_probs=284.4
Q ss_pred CCCCeEEEEEcCCCCcchhhcCCceEEEEe------CCCcceee------cCeEEEeceeecCCCCCccccccccchhhH
Q 002498 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVT------HGNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (915)
Q Consensus 6 ~~~~v~V~vRvRP~~~~e~~~~~~~~~~~~------~~~~~~~~------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv 73 (915)
+...|.||||=||++.+|.....-++|+|. .++|...+ ..+.|.||++||+.++ ++.||..+++|||
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHHH
Confidence 446899999999999999876655555552 23343333 2479999999997665 8999999999999
Q ss_pred HhhhcCCCceEEeeccCCCCcccccCCCCCCC---CccccHHHHHHHHHHHHHh-ccccceeEEEEeheehhhhhhhhcc
Q 002498 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREG---FQTGLIPQVMNALFNKIET-LRHQMEFQLHVSFIEILKEEVRDLL 149 (915)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~---~~~Glipr~~~~lF~~i~~-~~~~~~~~v~vS~~EIy~e~v~DLL 149 (915)
..+|+|--+|+||||||||||||||||+|... -..||-.++.+|+|..+.. .-....+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 99999999999999999999999999998743 3469999999999999876 2235689999999999999999999
Q ss_pred CCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002498 150 DSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (915)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i 229 (915)
++ +..|.+.||.+..+.|.||++..|.+.++++.+|..|+..|++|.|..|..|||||||
T Consensus 365 ~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 365 ND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred cc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 75 3579999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccc-cccCCCccchhhhhhhhhchHHHHHHHHHhhhhc
Q 002498 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERA-KRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (915)
Q Consensus 230 f~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~-~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~ 308 (915)
|+|.+.... .....++|.||||||+||. +.+.++.++-.||..||+||+||--||.+|+.++
T Consensus 425 fQIilr~~~-----------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk 487 (676)
T KOG0246|consen 425 FQIILRKHG-----------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 487 (676)
T ss_pred EeeeeecCC-----------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC
Confidence 999997521 2457899999999999997 4455667788899999999999999999998775
Q ss_pred cCCCCCcccCCCCcchhhhhhcCCC-CceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCccc
Q 002498 309 KRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (915)
Q Consensus 309 ~~~~~~~ipyrdSkLT~lL~dsLgG-ns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~ 371 (915)
. |+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|+|.....+.
T Consensus 488 ~-----H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 488 S-----HLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred C-----CCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 4 9999999999999999977 99999999999999999999999999999999876554
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-68 Score=594.16 Aligned_cols=333 Identities=36% Similarity=0.567 Sum_probs=289.3
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceee---------------cCeEEEeceeecCCCCCccccccccchhhH
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~---------------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv 73 (915)
.|.|+||+||+.+. .+...|+.|......+-. -.+.|.|.+||+|.++ |.+||+.++.|+|
T Consensus 32 ~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~plV 107 (809)
T KOG0247|consen 32 PVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPLV 107 (809)
T ss_pred chheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHHH
Confidence 78999999999862 334456655544332211 1257999999998765 8999999999999
Q ss_pred HhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhcc---------------------------
Q 002498 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR--------------------------- 126 (915)
Q Consensus 74 ~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~--------------------------- 126 (915)
.+++.|.|..+|+||.|||||||||+|++ ..+||+||+++-||..|....
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999954 458999999999999985310
Q ss_pred -------------------------------------ccceeEEEEeheehhhhhhhhccCCcccccccccCCCCCcccc
Q 002498 127 -------------------------------------HQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSI 169 (915)
Q Consensus 127 -------------------------------------~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~ 169 (915)
.+..|.|+|||+||||+-|||||.+.+..
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q-------------- 250 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ-------------- 250 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc--------------
Confidence 11358999999999999999999875421
Q ss_pred CCCC-CceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCC
Q 002498 170 SGRP-PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNG 248 (915)
Q Consensus 170 ~~~~-~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~ 248 (915)
+..+ ...+++|.++..||.|+++|.|+|.+|++.+|..|..+|++++|..|..|||||+||+|.|-+....
T Consensus 251 ~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~-------- 322 (809)
T KOG0247|consen 251 GKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS-------- 322 (809)
T ss_pred chhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc--------
Confidence 1112 2568899999999999999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhh
Q 002498 249 TPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ 328 (915)
Q Consensus 249 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT~lL~ 328 (915)
.....+..|.|.|||||||||..+|+..|.|++||++||.||++||+||.+|..++..+...+|||||||||++++
T Consensus 323 ----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq 398 (809)
T KOG0247|consen 323 ----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFK 398 (809)
T ss_pred ----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHH
Confidence 1236778999999999999999999999999999999999999999999999998877777899999999999999
Q ss_pred hcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcccCcccccc
Q 002498 329 DSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (915)
Q Consensus 329 dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~iknkp~vn~ 374 (915)
.+|.|..+..||+||+|.+.+|+|+|+.|+||..|..|.+.+.++.
T Consensus 399 ~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~ 444 (809)
T KOG0247|consen 399 NYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIK 444 (809)
T ss_pred HhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccc
Confidence 9999999999999999999999999999999999999999776643
No 26
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.9e-69 Score=604.54 Aligned_cols=322 Identities=48% Similarity=0.746 Sum_probs=279.8
Q ss_pred EcCCCCcchhhcCCceEEEEeCC---------CcceeecCeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEE
Q 002498 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (915)
Q Consensus 15 RvRP~~~~e~~~~~~~~~~~~~~---------~~~~~~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ 85 (915)
||||++..|...+...++.+... ..........|.||+||++++ +|++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDA-TQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTS-THHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888777765421 111122347899999999765 49999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhcccc--ceeEEEEeheehhhhhhhhccCCcccccccccCCC
Q 002498 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (915)
Q Consensus 86 ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~--~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~ 163 (915)
|||+|||||||||+|+ .....+||||+++++||..+...... ..|.|+|||+|||+|.|+|||+|...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 34677999999999999999886554 68999999999999999999998531
Q ss_pred CCccccCCCCCceEEecCCCc-EEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecccc
Q 002498 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (915)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~ 242 (915)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.++.|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 113479999999976 9999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCC-CccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCC
Q 002498 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (915)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~-~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdS 321 (915)
........|+|+||||||||+..+.++ .+.+++|+..||+||.+|++||.+|+.+ ....|||||+|
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~---~~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG---SKQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSTSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc---ccchhhhhhcc
Confidence 000136899999999999999998886 4788999999999999999999999987 22469999999
Q ss_pred cchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhhcc
Q 002498 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (915)
Q Consensus 322 kLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~~i 366 (915)
|||+||+|+|||||+|+||+||||+..++++|++||+||+++++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.5e-68 Score=592.63 Aligned_cols=318 Identities=48% Similarity=0.753 Sum_probs=284.6
Q ss_pred CeEEEEEcCCCCcchhhcCCceEEEEeCCCcceeec---------CeEEEeceeecCCCCCccccccccchhhHHhhhcC
Q 002498 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G 79 (915)
+|+|+|||||+...+ ..+...|+.+.++. .|.+. .+.|.||+||++++ +|++||+.++.|+|++++.|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK-TVTLTPPKDGRKAGPKSFTFDHVFDPNS-TQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCC-EEEEecCccccCcCceEEECCeEEcCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999998877 34556777776643 33332 48999999999765 48999999999999999999
Q ss_pred CCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccc-cceeEEEEeheehhhhhhhhccCCccccccc
Q 002498 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~ 158 (915)
+|+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|.+||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999954 6699999999999999987543 57899999999999999999998752
Q ss_pred ccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeee
Q 002498 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (915)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~ 238 (915)
...++.+++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13578999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhhhhccCCCCCcccC
Q 002498 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (915)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipy 318 (915)
.... ......|+|+||||||||+..+++..+.++.|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 4221 1147789999999999999999999999999999999999999999999998652 359999
Q ss_pred CCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 319 rdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
|+||||+||+|+|||+++|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8e-62 Score=568.02 Aligned_cols=290 Identities=49% Similarity=0.759 Sum_probs=268.7
Q ss_pred CeEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHh
Q 002498 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET 124 (915)
Q Consensus 45 ~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~ 124 (915)
...|.||+||++.++ |++||+.++.|+++.++.||||||||||||||||||||.|. ...+||||+++.+||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~---~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC---ccccchHHHHHHHHHHHHHh
Confidence 357999999998765 99999999999999999999999999999999999999885 46799999999999999999
Q ss_pred ccccceeEEEEeheehhhhhhhhccCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHH
Q 002498 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAAC 204 (915)
Q Consensus 125 ~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~ 204 (915)
......|.|.|||+|||||+++|||.|.. ..+.++++..++++|.|++++.|.++++++.+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~-------------------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~ 191 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNE-------------------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDL 191 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcc-------------------ccccccccCCCceEeecceEEecCChHHHHHH
Confidence 87778899999999999999999998754 12678999999999999999999999999999
Q ss_pred HHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccch
Q 002498 205 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284 (915)
Q Consensus 205 l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~ 284 (915)
|..|..+|++++|.+|..|||||+||+|++.+..... .....++|+||||||||++..++..+.++
T Consensus 192 l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~--------------~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 192 LRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS--------------GTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred HHHhhhhcccccchhccccccceEEEEEEEEEeccCc--------------cceecceEEEEeeccccccchhhcccchh
Confidence 9999999999999999999999999999999876543 12233789999999999999999999999
Q ss_pred hhhhhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhhhcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHhh
Q 002498 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (915)
Q Consensus 285 ~E~~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra~ 364 (915)
+||..||+||++||+||++|.+.+ +..|||||+|||||+|+++|||+++|.|||||+|+..++++|.+||+||+||+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999752 24699999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccc
Q 002498 365 NIQNKPVVNR 374 (915)
Q Consensus 365 ~iknkp~vn~ 374 (915)
+|+|+|.+|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5.4e-49 Score=400.95 Aligned_cols=179 Identities=51% Similarity=0.809 Sum_probs=164.1
Q ss_pred cccccchhhHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhh
Q 002498 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (915)
Q Consensus 64 vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e 143 (915)
||+.++ |+|+.+++|||+||||||+|||||||||+|+. .++||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 999989 99999999999999999999999999999964 678999999987
Q ss_pred hhhhccCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCC
Q 002498 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (915)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~S 223 (915)
++.++..|..+|.++.|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788899999999999999999
Q ss_pred CCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHH
Q 002498 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (915)
Q Consensus 224 SRSH~if~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~ 303 (915)
||||+||+|+|.+...... .......|+|+||||||||+..++++.+.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~~-----------~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALAS-----------ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCCC-----------CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999998654321 12456789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcccCCCCcchhhhhhcCCCCceeeEEeecCC
Q 002498 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (915)
Q Consensus 304 L~~~~~~~~~~~ipyrdSkLT~lL~dsLgGns~t~~I~~vsp 345 (915)
|+... .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.95 E-value=7.8e-24 Score=266.81 Aligned_cols=471 Identities=20% Similarity=0.210 Sum_probs=386.1
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 002498 368 NKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQE 447 (915)
Q Consensus 368 nkp~vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~e~~~~~~~l~e~~~~~q~ 447 (915)
.+|.+........|.....++..++.++... ......++.....+..+...|..+|..+.+.++.+++....+
T Consensus 827 vkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~-----e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~-- 899 (1930)
T KOG0161|consen 827 VKPLLKVTKTEEEMRAKEEEIQKLKEELQKS-----ESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERL-- 899 (1930)
T ss_pred HHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4667777777888999999999999988752 344667888888999999999999999999999888776665
Q ss_pred CCccccchhhHhhhhcccCCccchhhhcccCCCChhHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q 002498 448 GPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHAL-WQNTMDKELNELNKRLEQKESEMKLFGD--- 523 (915)
Q Consensus 448 ~~~~~~k~~eLe~~l~~~~~~d~~l~e~~~~~~~~~le~ee~~~~~~~-~q~~l~~el~eL~~~Le~kE~~~~kl~~--- 523 (915)
.....+++..+ .++.+++++++++..... ...++++++.++..+++..|..+.++..
T Consensus 900 ----~~~k~~le~~l---------------~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~ 960 (1930)
T KOG0161|consen 900 ----RAEKQELEKEL---------------KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKN 960 (1930)
T ss_pred ----HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888877 566667777766666555 5677889999999999999988888763
Q ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 524 ------IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ 597 (915)
Q Consensus 524 ------~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~ 597 (915)
.++......+++.+.+|.++.+.++..+..+...++. ++++.++++|++.+++..+++++.. |.+++..+
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~-~eek~~~l~k~~~kle~~l~~le~~---le~e~~~r 1036 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQA-EEEKAKSLNKAKAKLEQQLDDLEVT---LEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 1122222334566666666666666666666667666 4567789999999999999999999 99999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 002498 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMV 677 (915)
Q Consensus 598 ~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~ 677 (915)
.++++.+++++.+++.+++.+..++.++.+|. .+|++++-+......+++ ++++..+.
T Consensus 1037 ~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~---------------------~~l~kke~El~~l~~k~e-~e~~~~~~ 1094 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGELKDLQESIEELKKQKEELD---------------------NQLKKKESELSQLQSKLE-DEQAEVAQ 1094 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999996 999999999999999999 99999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Q 002498 678 LQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAAL 756 (915)
Q Consensus 678 l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~-~l~e~~~~~~~~~e~r~~l 756 (915)
++++++++.+.+++|.+.|+.++..+.+. ++.+++|.+|++... ++++..+.+..+++.+.++
T Consensus 1095 l~k~i~eL~~~i~el~e~le~er~~r~K~----------------ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~ 1158 (1930)
T KOG0161|consen 1095 LQKQIKELEARIKELEEELEAERASRAKA----------------ERQRRDLSEELEELKEELEEQGGTTAAQLELNKKR 1158 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999999777666 899999999999966 8999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCCC---CCCCCCcccccccCChhHHHH-------------------------------------
Q 002498 757 ADELTILKQVDQLSLNGHS---PQRGKNGHSRLSSLSPNARME------------------------------------- 796 (915)
Q Consensus 757 ~~el~~L~~~~e~~~~~~~---~~~~~~~~~~~~~l~~~~~~~------------------------------------- 796 (915)
+.++.+|++.++.+...|+ ...+..+.+.+.++..+..+.
T Consensus 1159 e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~ 1238 (1930)
T KOG0161|consen 1159 EAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEK 1238 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH
Confidence 9999999999999988877 223333444443333221111
Q ss_pred -------HHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002498 797 -------RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEI 869 (915)
Q Consensus 797 -------qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l 869 (915)
++.+++.+++....++.++..+++.+.++.. +..+.+.++...+..+.+.......++.+...++
T Consensus 1239 ~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~--------~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~ql 1310 (1930)
T KOG0161|consen 1239 KDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENE--------ELSRQLEEAEAKLSALSRDKQALESQLEELKRQL 1310 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--------HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555544 6778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 002498 870 KEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASM 914 (915)
Q Consensus 870 ~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~~~~~ 914 (915)
.+..+....+...+++++.+...|..++++..+..+.|.+.++.+
T Consensus 1311 e~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~ 1355 (1930)
T KOG0161|consen 1311 EEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKA 1355 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987753
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.40 E-value=4.4e-09 Score=134.92 Aligned_cols=366 Identities=20% Similarity=0.231 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 002498 496 WQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALR-------HHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSD 566 (915)
Q Consensus 496 ~q~~l~~el~eL~~~Le~kE~~~~kl~~--~~~~~~~-------~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~ 566 (915)
.+..++.++.+++.+++..+.....+.. +..+..- ..++..+.+++.++..++..+..+..++..++ +..
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~-e~~ 980 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLD-ENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3455667777777777766665544442 1111111 11222333444444444444444444444432 233
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 002498 567 GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI---KQEAEQFRQWK 643 (915)
Q Consensus 567 ~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~---k~e~~~~~~~~ 643 (915)
..+.|.+...+.++.++-.. |..+...-..+.+.+.+++..+..+...+...++.+.++.+.. ..+..-++.+-
T Consensus 981 ~kL~kekk~lEe~~~~l~~~---l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~ 1057 (1930)
T KOG0161|consen 981 SKLSKEKKELEERIRELQDD---LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESI 1057 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45566666677777777777 4445555566888889999999999999888888888877333 35556666666
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchH
Q 002498 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (915)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~ 723 (915)
.........|.....+...++.+|.. ++++..+....++..... -.
T Consensus 1058 ~~~~~~~~el~~~l~kke~El~~l~~-----------k~e~e~~~~~~l~k~i~e-----------------------L~ 1103 (1930)
T KOG0161|consen 1058 EELKKQKEELDNQLKKKESELSQLQS-----------KLEDEQAEVAQLQKQIKE-----------------------LE 1103 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHH-----------------------HH
Confidence 66666666666666666666555553 333333333222221110 01
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC----------CCC----------CCCCCcc
Q 002498 724 SLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNG----------HSP----------QRGKNGH 783 (915)
Q Consensus 724 ~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~----------~~~----------~~~~~~~ 783 (915)
+...+|.++++.- +...+..-..|..+..++..|+..++..... .+. .....+.
T Consensus 1104 ~~i~el~e~le~e------r~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e 1177 (1930)
T KOG0161|consen 1104 ARIKELEEELEAE------RASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHE 1177 (1930)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2244445554441 1122222233333344444444333332100 000 0000011
Q ss_pred cccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 784 SRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLW 863 (915)
Q Consensus 784 ~~~~~l~~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~ 863 (915)
..+..+. ...+..+.+|...+++.....+.+++.+++++.+. .++-..+..+..++..+.++.+.+.. ++.
T Consensus 1178 ~~~~~lr-~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~-----~~l~~ev~~~~~~k~~~e~~~k~~E~---~l~ 1248 (1930)
T KOG0161|consen 1178 AQIEELR-KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREI-----ADLAAELEQLSSEKKDLEKKDKKLEA---QLS 1248 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhccHHHHHHHHHH---HHH
Confidence 1222222 34455888899999999999999999999998887 56677888889999999999988775 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 002498 864 EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSASM 914 (915)
Q Consensus 864 ~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~~~~~ 914 (915)
+++..+.++++.+.++..+...+..+..++.+++++.+...+.+++..+++
T Consensus 1249 elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~ 1299 (1930)
T KOG0161|consen 1249 ELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQAL 1299 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887665
No 32
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.31 E-value=2.7e-13 Score=167.29 Aligned_cols=230 Identities=21% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHH
Q 002498 651 LKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLE 730 (915)
Q Consensus 651 ~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 730 (915)
.+|++++..+.....+++ +++...+.|+|++.|+.+.+.+|+++|+.++.++.++ ++.+++|.
T Consensus 11 ~~l~kke~El~~~~~~~e-~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~ka----------------ek~r~dL~ 73 (859)
T PF01576_consen 11 EQLKKKEEELSQLNSKLE-DEQALRAQLQKKIKELQARIEELEEELESERQARAKA----------------EKQRRDLS 73 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 889999999999999999 9999999999999999999999999999877655544 89999999
Q ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHHHHHHHHHHHHHhhcH
Q 002498 731 HELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSS 809 (915)
Q Consensus 731 ~Ele~~~-~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~l~~~~~~~~ 809 (915)
.||+.+. .|+++.+.+.++++.+++++.+|.+|++.+++....|+. .+.+|. ..++..+.+|..+++.++
T Consensus 74 ~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~--------~~~~lr-kkh~~~~~eL~eqle~lq 144 (859)
T PF01576_consen 74 EELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA--------TLAELR-KKHQDAVAELNEQLEQLQ 144 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 9999966 899999999999999999999999999999998888875 445554 556678888889999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 810 KALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQ 889 (915)
Q Consensus 810 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e 889 (915)
+....+++.++.++.+. .++...+.++..++....+..+.+.. ++.+++.++.+.++.+.++.....+++.+
T Consensus 145 k~k~~lEK~k~~l~~e~-----~dL~~~l~~~~k~k~~~Ek~~K~lE~---qL~El~~klee~er~~~el~~~k~kL~~E 216 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAEL-----DDLQAQLDSLQKAKQEAEKKRKQLEA---QLNELQAKLEESERQRNELTEQKAKLQSE 216 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHhHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 67888999999999999999999988 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Q 002498 890 RKELVKQQRMREQAVTIALASSASM 914 (915)
Q Consensus 890 ~~~l~~~~~~~~~~~~~l~~~~~~~ 914 (915)
+.+|..++++.+..++.+.+..+++
T Consensus 217 ~~eL~~qLee~e~~~~~l~r~k~~L 241 (859)
T PF01576_consen 217 NSELTRQLEEAESQLSQLQREKSSL 241 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987765
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=98.87 E-value=0.0004 Score=88.33 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=24.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 862 LWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (915)
Q Consensus 862 l~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~ 908 (915)
+.++..++.+....+.++...+..++.....+..++.+....+..+.
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555543
No 34
>PRK03918 chromosome segregation protein; Provisional
Probab=98.86 E-value=0.001 Score=84.78 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=11.5
Q ss_pred eeccCCCCccccc
Q 002498 86 AYGQTGSGKTYTM 98 (915)
Q Consensus 86 ayGqtgSGKT~Tm 98 (915)
-+|++|||||..|
T Consensus 28 i~G~nG~GKStil 40 (880)
T PRK03918 28 IIGQNGSGKSSIL 40 (880)
T ss_pred EEcCCCCCHHHHH
Confidence 6899999999876
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.80 E-value=0.00091 Score=87.01 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred ccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 65 FGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 65 y~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
|...+.|++-.+..|+++.| ||.|||||-.+
T Consensus 11 FKSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 11 FKSFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred cccCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 34444466666777888865 99999998666
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=98.75 E-value=0.0017 Score=82.73 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 002498 85 LAYGQTGSGKTYTM 98 (915)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (915)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 35899999998876
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.59 E-value=0.0016 Score=75.10 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 859 RFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTI 906 (915)
Q Consensus 859 ~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~ 906 (915)
+.|+.+...+|.|++..+.-++.+--++..++++|.+-+...+..+.+
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666655555544445555555555554444444443
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.49 E-value=0.015 Score=75.14 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDT--EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG 575 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~--~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~ 575 (915)
..+..++...+..++..+..+..+-.... -.....+......|..+...|......+...... ........+..
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~----~e~s~~~~k~~ 802 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNE----LEESEMATKDK 802 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34556676777777777766655541110 0111112233333444444443333333332222 22344566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 576 HTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (915)
Q Consensus 576 ~e~~l~~le~~l~~L~~~~~~-~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lk 654 (915)
++.++.+|+.+++.|+++... ..++.......+..+..++..|..++...-.+. .+....+..-..++-++..|.
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLL----TSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988865444 556666677888888888888888777655554 444555555555666666666
Q ss_pred HhhhhhHHHHHHHH
Q 002498 655 KEGRKNEFERHKLE 668 (915)
Q Consensus 655 k~~rk~~~~~~kle 668 (915)
++-+.......-|.
T Consensus 879 k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHhHHHHhhcc
Confidence 66665544444444
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=0.0093 Score=78.79 Aligned_cols=109 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e 577 (915)
..+..++..+..+|+.++..+..... +..+.+|+.++..++.+.+.+...+..+. .-.+...
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~----------~~s~~ele~ei~~~~~el~~l~~~~e~l~--------~e~e~~~ 856 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDL----------DRTVQQVNQEKQEKQHELDTVVSKIELNR--------KLIQDQQ 856 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 44566677777777766666554331 01344455555555555555544443321 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
..+..|+..+..++........-...+.+++.++..|..++..+...
T Consensus 857 ~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 857 EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444444443333334445555555555444444333
No 40
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.49 E-value=0.015 Score=76.67 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
+++-+||+|||||..|
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIV 40 (1179)
T ss_pred cEEEECCCCCChhHHH
Confidence 3456799999999987
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=0.016 Score=76.61 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=12.6
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.++-+|++|||||..+
T Consensus 30 ~~~I~G~NGaGKTTil 45 (1311)
T TIGR00606 30 LTILVGPNGAGKTTII 45 (1311)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456899999999764
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.39 E-value=0.031 Score=73.65 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.0
Q ss_pred EeeccCCCCccccc
Q 002498 85 LAYGQTGSGKTYTM 98 (915)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (915)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999887
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=98.37 E-value=0.026 Score=72.08 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=2.5
Q ss_pred eecCCC
Q 002498 53 VYGNGG 58 (915)
Q Consensus 53 Vf~~~~ 58 (915)
|+|+++
T Consensus 28 i~G~nG 33 (880)
T PRK03918 28 IIGQNG 33 (880)
T ss_pred EEcCCC
Confidence 444443
No 44
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.35 E-value=8.2e-08 Score=119.14 Aligned_cols=183 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002498 569 TQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASR-- 646 (915)
Q Consensus 569 ~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~-- 646 (915)
+-..+.++..+|.+++.+ +.........|.+.+.++..++..+..++.........|-++.+.=-..+..|+...
T Consensus 319 lEeaKKkL~~~L~el~e~---le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~ 395 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQ---LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEE 395 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334555666777888888 444445556688888888888888888888888777777665553333333443332
Q ss_pred -HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHH
Q 002498 647 -EKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSL 725 (915)
Q Consensus 647 -~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (915)
.-+...+.+..+....++.+|...... +.-.++.+.-.++.|...+.-=. ... +..+++. ..-++.
T Consensus 396 ~~~e~d~~q~e~r~~~te~~~Lk~~lee----~~e~~e~lere~k~L~~El~dl~--~q~------~~~~k~v-~eLek~ 462 (859)
T PF01576_consen 396 LQAERDAAQREARELETELFKLKNELEE----LQEQLEELERENKQLQDELEDLT--SQL------DDAGKSV-HELEKA 462 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHhhccch--hhh------hhhccch-HHHHHH
Confidence 233344444445555555554432221 11111222222333333222000 000 0011111 112455
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002498 726 QKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVD 767 (915)
Q Consensus 726 ~~~l~~Ele~~~-~l~e~~~~~~~~~e~r~~l~~el~~L~~~~ 767 (915)
++.|..+++... .+.++.+.+......+-.+.-+|..++...
T Consensus 463 kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~ 505 (859)
T PF01576_consen 463 KRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEI 505 (859)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776666543 677777777777667777777777666643
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.35 E-value=0.0011 Score=76.31 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHHHHHHHHHHHHH
Q 002498 726 QKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENML 805 (915)
Q Consensus 726 ~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~l~~~~ 805 (915)
+..+..|| ...+.|++..++.+....++--+.+.+.+= .....+.++. . ..+....+++
T Consensus 240 r~~F~~eL--~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI--~~i~~~~~~~----------~-------~~~~~~rEEl 298 (546)
T KOG0977|consen 240 REYFKNEL--ALAIREIRAQYEAISRQNRKDIESWYKRKI--QEIRTSAERA----------N-------VEQNYAREEL 298 (546)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHhhhccc----------c-------chhHHHHHHH
Confidence 55666665 556778888888887777765444443321 1111111110 0 0011112222
Q ss_pred hhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002498 806 NMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQ 885 (915)
Q Consensus 806 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~ 885 (915)
......+..|..++++++.... .....+.+-++.+..-.+.... .|.+++.++..+..++..+..++..
T Consensus 299 ~~~R~~i~~Lr~klselE~~n~--------~L~~~I~dL~~ql~e~~r~~e~---~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 299 RRIRSRISGLRAKLSELESRNS--------ALEKRIEDLEYQLDEDQRSFEQ---ALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHhcccchhhhhccccccCh--------hHHHHHHHHHhhhhhhhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333444444444332 2223334444444444444443 6777777788887777777666655
Q ss_pred HHHHHHHHHHHHHHH
Q 002498 886 SEAQRKELVKQQRMR 900 (915)
Q Consensus 886 ~e~e~~~l~~~~~~~ 900 (915)
+-.=...|..++.-|
T Consensus 368 LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 368 LLDTKISLDAEIAAY 382 (546)
T ss_pred hhchHhHHHhHHHHH
Confidence 433333344333333
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.26 E-value=0.00097 Score=74.09 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e 577 (915)
..|+.+-..|..+|....... .......+..|+..|..|...+..+..++..+..++.++..+..+...|+....
T Consensus 21 r~LE~~N~~Le~~i~~~~~~~----~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~- 95 (312)
T PF00038_consen 21 RFLEQENKRLESEIEELREKK----GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL- 95 (312)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhhhhHHHHHHHHhcc----cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH-
Confidence 344555555555555443332 122336788899999999999999999999999999888766666666776664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHH
Q 002498 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE-----QFR-QWKASREKELL 651 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~-----~~~-~~~~~~~kE~~ 651 (915)
.....++.++..|++... .....+-.++.++..|+++|..++..+.+-+..++.... ..+ .+...+..-+.
T Consensus 96 ~~~~~le~el~~lrk~ld---~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~ 172 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLD---EETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALR 172 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHH
T ss_pred HHHHHHHHHHhhhhhhhh---hhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhh
Confidence 556899999887775544 477778889999999999999999988887766665442 111 11222222222
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHH
Q 002498 652 KLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEH 731 (915)
Q Consensus 652 ~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 731 (915)
.++.+- ...+.+.. ..-....+.|+.++......-...+ .-...
T Consensus 173 eiR~~y---e~~~~~~~---~e~e~~y~~k~~~l~~~~~~~~~~~------------------------------~~~~~ 216 (312)
T PF00038_consen 173 EIRAQY---EEIAQKNR---EELEEWYQSKLEELRQQSEKSSEEL------------------------------ESAKE 216 (312)
T ss_dssp HHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHH
T ss_pred hHHHHH---HHHHhhhh---hhhhhhccccccccccccccccccc------------------------------chhHh
Confidence 222111 11111111 1112334444444433333322222 22233
Q ss_pred HHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002498 732 ELE-VSANVHEVRFKYEKQSQVQAALADELTILKQVDQ 768 (915)
Q Consensus 732 Ele-~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e 768 (915)
|+. ....+..+...++.+...+..|+..+..+.....
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 432 3557778888888888888899999888876543
No 47
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=0.057 Score=71.17 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=8.0
Q ss_pred eceeecCCCCCcccc
Q 002498 50 FDHVYGNGGSPSSAM 64 (915)
Q Consensus 50 FD~Vf~~~~~~q~~v 64 (915)
|.-|+||+++--..|
T Consensus 25 ~~~i~G~NGsGKS~l 39 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNI 39 (1179)
T ss_pred cEEEECCCCCChhHH
Confidence 445666666543333
No 48
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.22 E-value=0.06 Score=69.94 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---cchhhhhhhH
Q 002498 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANS---DGHTQKMQDG 575 (915)
Q Consensus 499 ~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~---~~~~~Klk~~ 575 (915)
.++.++..|...+..+...+.++. ....-..+++..|++.+..+..+.+.|......+...- ......+..+
T Consensus 658 ~l~e~~~~l~~ev~~ir~~l~k~~-----~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e 732 (1822)
T KOG4674|consen 658 KLQEDFDSLQKEVTAIRSQLEKLK-----NELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE 732 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443332 22222224455555555555555554443332222111 1122244444
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 576 HT---LKLKALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (915)
Q Consensus 576 ~e---~~l~~le~~l~~L~~~~~~----~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~k 648 (915)
+. .++..++.++..|+++..- ..+|.....++..+...|+..+..|+..+..+..---+.-.++......+.+
T Consensus 733 L~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~ 812 (1822)
T KOG4674|consen 733 LLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELER 812 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3577888888888877665 4455566677778888888888888888777765555666788888889999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002498 649 ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 649 E~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le 697 (915)
++..|+++.......++.+......+-.-++..+.+....+..+...+.
T Consensus 813 el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~ 861 (1822)
T KOG4674|consen 813 ELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLD 861 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988999999988888888888888887777776666664
No 49
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.19 E-value=0.035 Score=73.07 Aligned_cols=20 Identities=10% Similarity=0.420 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002498 501 DKELNELNKRLEQKESEMKL 520 (915)
Q Consensus 501 ~~el~eL~~~Le~kE~~~~k 520 (915)
...+.++..++..++..+..
T Consensus 183 ~~~l~el~~~~~~L~~q~~~ 202 (1164)
T TIGR02169 183 EENIERLDLIIDEKRQQLER 202 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 50
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.10 E-value=0.051 Score=64.72 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002498 673 RQKMVLQRKTEEAAIATKRLKELLEA 698 (915)
Q Consensus 673 ~q~~~l~rk~eE~~a~~k~Lke~le~ 698 (915)
+++-.|+|+++++++.+-.|+|+.++
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999884
No 51
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.05 E-value=0.07 Score=64.50 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cCCcchhhhhhhHHHH------------HHHHHHHH-HHHHHHH
Q 002498 533 FGKKIMELEEEKRIVQQERDRLLAEIENLA------ANSDGHTQKMQDGHTL------------KLKALEAQ-ILELKKK 593 (915)
Q Consensus 533 ~~~ki~~Le~ei~~le~e~~~l~~~l~~~e------e~~~~~~~Klk~~~e~------------~l~~le~~-l~~L~~~ 593 (915)
-..++.+|..|+..|+-....|...+..+. +.-+.......+.+.. .+..|+.- -+++...
T Consensus 320 dr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~ 399 (1195)
T KOG4643|consen 320 DRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEEL 399 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence 346677777777777777766666544432 1111222222222211 11111110 1133333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002498 594 QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (915)
Q Consensus 594 ~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~ 629 (915)
--.+-.+.+.+.+++.++..|.+.|.+|..++++|.
T Consensus 400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~ele 435 (1195)
T KOG4643|consen 400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELE 435 (1195)
T ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444777888889999999999999999999998874
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.03 E-value=0.041 Score=61.10 Aligned_cols=84 Identities=23% Similarity=0.353 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l 614 (915)
+++..+-..++.|+.++..|..++..+..........++..|+..+.++...|.+ +.+.+.+++.++..+
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~----------~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDD----------LSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhh----------HHHHhhHHhhhhhhH
Confidence 3333444444455555555555555544443445566777887777777766443 344455666666667
Q ss_pred HHHHHHHHHHHHHH
Q 002498 615 QAEIQSIKAQKVQL 628 (915)
Q Consensus 615 ~~ei~~lk~~k~~L 628 (915)
+.++.+++.+....
T Consensus 81 ~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 81 KEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666554443
No 53
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.01 E-value=7.5e-08 Score=114.11 Aligned_cols=255 Identities=22% Similarity=0.259 Sum_probs=150.0
Q ss_pred CCCCCCCeEEEEEcCCCCcch--hh-------cCCceEEEEeCCC-cceeecCeEEEeceeecCCCCCccccccccchhh
Q 002498 3 TASENCSVKVAVHVRPLIGDE--RA-------QGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (915)
Q Consensus 3 ~~~~~~~v~V~vRvRP~~~~e--~~-------~~~~~~~~~~~~~-~~~~~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~l 72 (915)
.-++.+.++|+|+|+|..... .. .....-..+..+. ..+......|.||.+|.+... ...++. ....+
T Consensus 300 sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~-~~~~~ 377 (568)
T COG5059 300 SLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFR-EQSQL 377 (568)
T ss_pred hcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHH-HHHhh
Confidence 446677999999999987432 10 0000000111111 122223467999999976533 333332 35566
Q ss_pred HHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccc-cceeEEEEeheehhhhhhhhccCC
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~ 151 (915)
++.-+.| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-+..+|-..+.++...
T Consensus 378 ~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 378 SQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred hhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777 899999999999999 334456666676888877765432 334445555666663333333322
Q ss_pred cccccccccCCCCCccccCCCCCceEEecC-CCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEE
Q 002498 152 VSVSKSVTANGHAGKVSISGRPPIQIRESS-NGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (915)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if 230 (915)
..... .-.+.... .....+..++ .......+.. ........+....+..|..++++|.+|
T Consensus 449 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 449 ELSKK-----------------KTKIHKLNKLRHDLSSLLS-SIPEETSDRV-ESEKASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred hcCCh-----------------HHHHHHHHHHHHHHHHhhh-hcchhhhhhh-hhhhhccchhhcccchhhhhcccchhh
Confidence 11000 00000000 0000000000 0000111111 111456778889999999999999999
Q ss_pred EEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCccccccCCCccchhhhhhhhhchHHHHHHHHHhh
Q 002498 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (915)
Q Consensus 231 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~~L~ 305 (915)
+.......... ... + ++.|||||+||. ...+-|.++++...+|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~~~--------------~~~-~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNSST--------------KEL-S--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhhhh--------------HHH-H--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 87654322110 011 1 799999999999 889999999999999999999999998764
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.98 E-value=0.071 Score=61.90 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002498 726 QKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLS 770 (915)
Q Consensus 726 ~~~l~~Ele~~~-~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~ 770 (915)
-.+..+||..+. .+.-+...-+.+.+++..|-..+..|+.+++-.
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444443322 444556666777777777777777777665443
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.97 E-value=0.18 Score=66.26 Aligned_cols=134 Identities=20% Similarity=0.334 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHH
Q 002498 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (915)
Q Consensus 499 ~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~ 578 (915)
.+...+..++..|...+.....+...+++.....+ +++..+..++..++..++.|......++...+....+++..+..
T Consensus 317 ~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~ 395 (1201)
T PF12128_consen 317 ALNADLARIKSELDEIEQQKKDYEDADIEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR 395 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443333322 44555666666666666666666666555445555566666655
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 579 KLKALEAQILELKKKQES---------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (915)
Q Consensus 579 ~l~~le~~l~~L~~~~~~---------~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k 633 (915)
.+..++.++..++..... +.-...+....+..+..++.+...++.....+..+++
T Consensus 396 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 459 (1201)
T PF12128_consen 396 QQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLK 459 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555444322222 1111111223334444555555555555555544443
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.94 E-value=0.0064 Score=70.26 Aligned_cols=208 Identities=18% Similarity=0.250 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 577 TLKLKALEAQILELKKKQES----QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (915)
Q Consensus 577 e~~l~~le~~l~~L~~~~~~----~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~ 652 (915)
...+.+++.++.-++...+. ..+|-+...++...+..++.++.+.---+++++.+...=.+...-+....+.||..
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 34556666665544432222 23333333444444444444444444556666666666666677777777777766
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHH--
Q 002498 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLE-- 730 (915)
Q Consensus 653 Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 730 (915)
++..-+..-. .... -+++ .|+..++++++.+.++.-...+ +.+..|..
T Consensus 227 ~~~~~~rd~t--~~~r-------~~F~---~eL~~Ai~eiRaqye~~~~~nR------------------~diE~~Y~~k 276 (546)
T KOG0977|consen 227 ERRKARRDTT--ADNR-------EYFK---NELALAIREIRAQYEAISRQNR------------------KDIESWYKRK 276 (546)
T ss_pred HHHHHhhccc--ccch-------HHHH---HHHHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHH
Confidence 6555443221 0000 0111 2466677777777774321111 22233333
Q ss_pred -------------------HHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCC
Q 002498 731 -------------------HELEV-SANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLS 790 (915)
Q Consensus 731 -------------------~Ele~-~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~ 790 (915)
+|+.. ...+..++..+..+...+..+++++..|+-.++.....++...
T Consensus 277 I~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L------------ 344 (546)
T KOG0977|consen 277 IQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQAL------------ 344 (546)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhh------------
Confidence 44433 2356666677777777777777888777777666655444322
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHH
Q 002498 791 PNARMERIASLENMLNMSSKALVEMASQLSEAEERER 827 (915)
Q Consensus 791 ~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 827 (915)
....++|..+.+++..+..+++.|-..+..++.+..
T Consensus 345 -~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~ 380 (546)
T KOG0977|consen 345 -NDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIA 380 (546)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHH
Confidence 122245555555555555555555555555555554
No 57
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.90 E-value=0.15 Score=63.26 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=38.2
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002498 832 RGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDL 879 (915)
Q Consensus 832 ~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l 879 (915)
..+|...++.........+|..++..+..+..-.+..|+ .+.+..+.
T Consensus 742 ~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-sq~~~~~t 788 (1317)
T KOG0612|consen 742 EKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-SQEQEVNT 788 (1317)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-hHHHhhcc
Confidence 467999999999999999999999988888888888777 55555544
No 58
>PRK01156 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.23 Score=63.48 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456899999998876
No 59
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.82 E-value=0.13 Score=59.78 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 002498 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN 564 (915)
Q Consensus 527 ~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~ 564 (915)
..++..|-+++..|++.+..+-+||+.+..++.++..+
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999887543
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.78 E-value=0.16 Score=59.86 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 529 LRHHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (915)
Q Consensus 529 ~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~ 559 (915)
.++.+++.+.-++.+++..+.+++.+...++
T Consensus 121 ekq~lQ~ti~~~q~d~ke~etelE~~~srlh 151 (1265)
T KOG0976|consen 121 EKQKLQDTIQGAQDDKKENEIEIENLNSRLH 151 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333444444455555544444444444333
No 61
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.73 E-value=0.27 Score=61.08 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=81.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 002498 568 HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK---AQKVQLQNKIKQEAEQFRQWKA 644 (915)
Q Consensus 568 ~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk---~~k~~L~~~~k~e~~~~~~~~~ 644 (915)
++.+...++-.++++.+.+..++... ...++..+.++...-+.++.+....+ .........++.+..-+.....
T Consensus 564 kl~~~~~e~~~~iq~~~e~~~~~~d~---l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~ 640 (1317)
T KOG0612|consen 564 KLRKHSKELSKQIQQELEENRDLEDK---LSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLK 640 (1317)
T ss_pred hHhhhhhhhhHHHHHHhhccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444455555555555443333332 33344444444444444444444443 3344455566666666666666
Q ss_pred HHHHHHHHHHHhhhhhH---HHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHhhhhhcccccCCCCCCCCC
Q 002498 645 SREKELLKLKKEGRKNE---FERHK--LEALNQRQKMVLQRKTEEAAIATKRL--KELLEARKSSARENSVNSTGYTTPT 717 (915)
Q Consensus 645 ~~~kE~~~Lkk~~rk~~---~~~~k--le~~~~~q~~~l~rk~eE~~a~~k~L--ke~le~ek~~~~~~~~~~~~~~~~~ 717 (915)
....++.+++...+... ..+.+ ++.........++..++...+..+++ ......-+.....- ..+++
T Consensus 641 ~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~l------seek~ 714 (1317)
T KOG0612|consen 641 AGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKL------SEEKS 714 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh------ccccc
Confidence 66666666655333222 22222 44455555566666666666666666 11100000011111 14555
Q ss_pred CCcchHHHHHHHHHHHHHHH
Q 002498 718 GQSNEKSLQKWLEHELEVSA 737 (915)
Q Consensus 718 ~~~~~~~~~~~l~~Ele~~~ 737 (915)
++.+++....|+..|++.+.
T Consensus 715 ar~k~e~~~~~i~~e~e~L~ 734 (1317)
T KOG0612|consen 715 AREKAENLLLEIEAELEYLS 734 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66666777888888888754
No 62
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.72 E-value=0.25 Score=60.47 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 002498 738 NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLN 772 (915)
Q Consensus 738 ~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~ 772 (915)
+++.+.+.+......+...+.++..|...++....
T Consensus 570 EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~ 604 (775)
T PF10174_consen 570 EVERLLDILREAENEKNDKEKKIGELEKELEKAQM 604 (775)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 56667777777778888888888888887665443
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.69 E-value=0.27 Score=59.80 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002498 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (915)
Q Consensus 532 ~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~ 611 (915)
-|.+++.+|+.....|.++..=|..+|..++.-.. + ..+|.+|=.|+++... |....--...++
T Consensus 261 fykdRveelkedN~vLleekeMLeeQLq~lrarse-~------------~tleseiiqlkqkl~d---m~~erdtdr~kt 324 (1195)
T KOG4643|consen 261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSE-G------------ATLESEIIQLKQKLDD---MRSERDTDRHKT 324 (1195)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc-c------------CChHHHHHHHHHHHHH---HHHhhhhHHHHH
Confidence 36677777777777777777666666655432111 1 2233333333332222 222233334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 002498 612 KRLQAEIQSIKAQKVQLQNKIKQEAE---QFRQWKASREKELLKLKK 655 (915)
Q Consensus 612 ~~l~~ei~~lk~~k~~L~~~~k~e~~---~~~~~~~~~~kE~~~Lkk 655 (915)
..|+.|+..|.-++..|--+|--.-. --........+|..+|..
T Consensus 325 eeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts 371 (1195)
T KOG4643|consen 325 EELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS 371 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh
Confidence 67788888887777777655542221 112334445555566655
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.28 Score=59.48 Aligned_cols=149 Identities=20% Similarity=0.247 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 579 KLKALEAQILELKK----KQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (915)
Q Consensus 579 ~l~~le~~l~~L~~----~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lk 654 (915)
.+.+|+..+..|+. .+....++.+.|-+++-+++.|+++|..-..++.... ..+..++
T Consensus 273 ~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l------------------~~l~~~~ 334 (1200)
T KOG0964|consen 273 EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL------------------HVLQKVK 334 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH------------------HHHHHHH
Confidence 35555555554442 2333556666777777778888777777666555443 3334444
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHH
Q 002498 655 KEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELE 734 (915)
Q Consensus 655 k~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele 734 (915)
.+-.+.+.++.+.+-..+...---.+-..-+..+..+.++.+.++ +..+.+...+..-.|+..|++
T Consensus 335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq--------------gr~sqFssk~eRDkwir~ei~ 400 (1200)
T KOG0964|consen 335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ--------------GRYSQFSSKEERDKWIRSEIE 400 (1200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh--------------ccccccCcHHHHHHHHHHHHH
Confidence 555555556665554444332111111122222333444444421 112233444677999999987
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 735 VSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (915)
Q Consensus 735 ~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~ 765 (915)
...+ .+....+....+..++..++.
T Consensus 401 ~l~~------~i~~~ke~e~~lq~e~~~~e~ 425 (1200)
T KOG0964|consen 401 KLKR------GINDTKEQENILQKEIEDLES 425 (1200)
T ss_pred HHHH------HHhhhhhHHHHHHHHHHHHHH
Confidence 6553 333333444444444444444
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.66 E-value=0.013 Score=62.26 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002498 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (915)
Q Consensus 532 ~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~ 611 (915)
..+.+...++..+..|+.++..+...+.+++. .......-...|+.+|..|..+ |+.........++.-.+++..+
T Consensus 131 ~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~-~~~~~~~re~~~e~~i~~L~~~---lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 131 RAEERAEAAESKIKELEEELKSVGNNLKSLEA-SEEKASEREDEYEEKIRDLEEK---LKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888888888888653 2223344457788888888888 5555555666777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002498 612 KRLQAEIQSIKAQKVQLQNKI 632 (915)
Q Consensus 612 ~~l~~ei~~lk~~k~~L~~~~ 632 (915)
..|..+|...+..+..+...|
T Consensus 207 d~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 207 DRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877776665444
No 66
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.49 Score=62.05 Aligned_cols=9 Identities=56% Similarity=0.859 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002498 505 NELNKRLEQ 513 (915)
Q Consensus 505 ~eL~~~Le~ 513 (915)
.+|..+|+-
T Consensus 196 ~el~~~l~~ 204 (1163)
T COG1196 196 EELEKQLEK 204 (1163)
T ss_pred HHHHHHHHH
Confidence 333333333
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.64 E-value=0.29 Score=58.70 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q 002498 634 QEAEQFRQWKASREKELLKLKKEGR--KNEFERHKLEALNQRQ-KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (915)
Q Consensus 634 ~e~~~~~~~~~~~~kE~~~Lkk~~r--k~~~~~~kle~~~~~q-~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~ 710 (915)
.|.+....|+.+...|+..+..--. -+..+|..=.++--.+ .-.++-+++|+..-+.=||.+.+.. .+
T Consensus 290 ~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek------G~--- 360 (1243)
T KOG0971|consen 290 KEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK------GS--- 360 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CC---
Confidence 5566666777777777665543211 1112222111111111 3456667777777777777666521 11
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 711 TGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
.++. ...-..+..-.....++..+..+++-...-..++.++.+++...+..
T Consensus 361 ---~~~~--~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 361 ---DGQA--ASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred ---CCcc--cchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 1110 01111222222333334456666665555566666666666555443
No 68
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.62 E-value=0.35 Score=59.31 Aligned_cols=261 Identities=19% Similarity=0.203 Sum_probs=143.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002498 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (915)
Q Consensus 597 ~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~ 676 (915)
...+++.-++++.++..|+..+.-...-+..+++.|...-......+....+--.+|.+++.++...-.+|+.... +..
T Consensus 240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~-~~~ 318 (775)
T PF10174_consen 240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEE-QDS 318 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHH
Confidence 4445555555566666665555544556677777777666666666666666667777777666666666663222 111
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHH---HHHHHHHHHH-hHHHHHHHHHHHHHH
Q 002498 677 VLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQK---WLEHELEVSA-NVHEVRFKYEKQSQV 752 (915)
Q Consensus 677 ~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~Ele~~~-~l~e~~~~~~~~~e~ 752 (915)
-++.-+ .-|++.|.+...- .+.+.. .|.-+|+... .++.....++...++
T Consensus 319 d~r~hi-------~~lkesl~~ke~~-------------------~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 319 DMRQHI-------EVLKESLRAKEQE-------------------AEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHH-------HHHHHHHHHHHHH-------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 2233333211100 011111 1223333333 566667777778888
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhcc
Q 002498 753 QAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGR 832 (915)
Q Consensus 753 r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 832 (915)
...+..++..++..++. -...|..|+..|+.+..++.+=...+..+..++.+....
T Consensus 373 ~~~~~~Ei~~l~d~~d~------------------------~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~ 428 (775)
T PF10174_consen 373 KSRLQGEIEDLRDMLDK------------------------KERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADS 428 (775)
T ss_pred HHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888877765433 224566666666666666655555555555555421000
Q ss_pred cc-ccccccHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 833 GR-WNHLRFMGDAKNLLQYMFNVAAETRFQLW-EKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (915)
Q Consensus 833 ~~-~~~~~~l~eak~~l~~l~~~~~~~~~ql~-~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~ 908 (915)
.. -..+.++.+|-....++...+...+.... +...++.-.+..+..+...+..++.++.+...++....+.++.|.
T Consensus 429 ~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 429 SNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 01 13457778888888888877765543333 334555556666666666666666666665555555555555554
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.61 E-value=0.013 Score=71.05 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHhhhh
Q 002498 647 EKELLKLKKEGRKNEFERHKLEALNQRQ---KMVLQRKTEEAAIATKRLKELLEARKSS 702 (915)
Q Consensus 647 ~kE~~~Lkk~~rk~~~~~~kle~~~~~q---~~~l~rk~eE~~a~~k~Lke~le~ek~~ 702 (915)
.-|+.+|+++-..++..+..|....++- -+.|-||+.|-..++..+..+|..+|..
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443222211 2455566767666666666666666533
No 70
>PRK11637 AmiB activator; Provisional
Probab=97.55 E-value=0.051 Score=63.10 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002498 596 SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---EAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 596 ~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~---e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle 668 (915)
.+.++...+..++.+...+...+.+++.++.+|..+..+ ....++........++.+|++...++...|.+++
T Consensus 178 ~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 178 TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666544443 4444555555555555555555555555554444
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.52 E-value=0.75 Score=60.48 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHH
Q 002498 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAE 857 (915)
Q Consensus 796 ~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~ 857 (915)
..|..+..++......+...........+... -....|..+..+.+.+-.+..-...+..
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 830 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYED--WLQEEWDKVDELREEKPELEEQLRDLEQ 830 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHhhhhhhhhhhHHHHHHHHHHH
Confidence 56677777777777677666665555544331 2246687777666666666555544443
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.52 E-value=0.48 Score=58.21 Aligned_cols=106 Identities=22% Similarity=0.286 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcccCccccccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 353 SLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (915)
Q Consensus 353 tl~TL~fa~ra~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~e~~ 432 (915)
+..|=+|-.+|+.|+..+++. .....+..++..|...+.-|... ..+ .+.++.|-.....|.++|++..
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs-------~~~i~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVS-------AEDIAQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--Ccc-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999988866 35667777777777776666432 112 2334445555556666666666
Q ss_pred HHHHHHHhcccccccC---------------CccccchhhHhhhhcccCCcc
Q 002498 433 SRRAVVEHCGTDAQEG---------------PVSFVKSDGLKRGFQSIDSSD 469 (915)
Q Consensus 433 ~~~~~l~e~~~~~q~~---------------~~~~~k~~eLe~~l~~~~~~d 469 (915)
+.+.+.+..+.+.+.. ..+.....+|++++.+|.+++
T Consensus 1246 e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1246 EDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESD 1297 (1758)
T ss_pred hhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6666666655544322 012233456777666665443
No 73
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.50 E-value=0.44 Score=57.42 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002498 540 LEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQ 619 (915)
Q Consensus 540 Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~ 619 (915)
+..++..++..+......+..++- +.....-.....+|..|-.. |.++...+...++...++...+..++....
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l---~~~~~~~~~i~~~Id~Lyd~---lekE~~A~~~vek~~~~l~~~l~~~~e~~~ 327 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDL---DEAEEKNEEIQERIDQLYDI---LEREVKARKYVEKNSDTLPDFLEHAKEQNK 327 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455555555555555555555421 11111122333444444444 566666666666666666666666666555
Q ss_pred HHHHHHHHH
Q 002498 620 SIKAQKVQL 628 (915)
Q Consensus 620 ~lk~~k~~L 628 (915)
.++.....|
T Consensus 328 ~l~~Ei~~l 336 (569)
T PRK04778 328 ELKEEIDRV 336 (569)
T ss_pred HHHHHHHHH
Confidence 555444444
No 74
>PRK11637 AmiB activator; Provisional
Probab=97.47 E-value=0.053 Score=63.02 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=55.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 002498 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQ 679 (915)
Q Consensus 600 l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~ 679 (915)
+...-.....++...+.++...+.....+...+..+...+...+.+++..+..|+.+....+.++..|+.+.+.....|.
T Consensus 171 ~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555555666667778888888888888899999999999888898888876665555544
Q ss_pred H
Q 002498 680 R 680 (915)
Q Consensus 680 r 680 (915)
+
T Consensus 251 ~ 251 (428)
T PRK11637 251 R 251 (428)
T ss_pred H
Confidence 3
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.59 Score=58.04 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 725 LQKWLEHELEVSA--NVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 725 ~~~~l~~Ele~~~--~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
....|...++... .+.-..+.++...+...++++++.++...
T Consensus 886 ~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~ 929 (1293)
T KOG0996|consen 886 RIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVA 929 (1293)
T ss_pred HHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555554433 34444667777777778888888776554
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.39 Score=56.71 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.3
Q ss_pred ccccHHHHHHHHHHHHH
Q 002498 107 QTGLIPQVMNALFNKIE 123 (915)
Q Consensus 107 ~~Glipr~~~~lF~~i~ 123 (915)
+.||-+.++..|+..-+
T Consensus 43 qS~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSD 59 (1118)
T ss_pred hcCCChHHHHHHHHhhh
Confidence 35788888888886543
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.33 E-value=1.3 Score=58.80 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
++..+|++|||||++|
T Consensus 29 ~~~l~G~NGaGKSTll 44 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTM 44 (1486)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4456799999999998
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.32 E-value=0.63 Score=55.13 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (915)
Q Consensus 597 ~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k 633 (915)
...|.+.+...+.-++.++++++.+++.+..-....-
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdse 315 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSE 315 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 4557777778888888888888888877766554333
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.61 Score=56.67 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=75.8
Q ss_pred HHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002498 598 VELLKQKHKS-----DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (915)
Q Consensus 598 ~~l~k~k~k~-----e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~ 672 (915)
++|.+.++.+ +.++.....++..+...++... +++..+...-...+-++..++.+-.++++.+.-|-.+.+
T Consensus 214 qkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~----e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~eke 289 (1200)
T KOG0964|consen 214 QKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAP----EESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKE 289 (1200)
T ss_pred HHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555433 2444444455544444444332 333333333344444444444444444444444443222
Q ss_pred HH----HHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHH-HhHHHHHHHHH
Q 002498 673 RQ----KMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-ANVHEVRFKYE 747 (915)
Q Consensus 673 ~q----~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~-~~l~e~~~~~~ 747 (915)
.. -.++++|+ -+.-.++.|+++++.....+ ..+-.....+..+++.. .++.+..-.++
T Consensus 290 q~~a~~t~~~k~kt-~lel~~kdlq~~i~~n~q~r----------------~~~l~~l~~~~~ki~e~~~EL~~I~Pky~ 352 (1200)
T KOG0964|consen 290 QLKARETKISKKKT-KLELKIKDLQDQITGNEQQR----------------NLALHVLQKVKDKIEEKKDELSKIEPKYN 352 (1200)
T ss_pred HHHHHHHHHHHHhh-hhhhhhHHHHHHhhhhhhhh----------------hhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11 12222222 24445677777766332211 11234455555555553 37888888899
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002498 748 KQSQVQAALADELTILKQV 766 (915)
Q Consensus 748 ~~~e~r~~l~~el~~L~~~ 766 (915)
.+.+.-..+-..|..|+.+
T Consensus 353 ~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 353 SLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 9999888888888888774
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.22 E-value=0.31 Score=59.40 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCC
Q 002498 634 QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVL-QRKTEEAAIATKRLKELLEARKSSARENSVNSTG 712 (915)
Q Consensus 634 ~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l-~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~ 712 (915)
+-.+..|..+++++.|+-+|+.+.+..+..+..|+.+-+.. ... +..-.|.+.++-.|.-.-|+ . ....
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l-r~~~~e~~~~~e~L~~aL~amqdk--~-~~LE------ 607 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL-RKYEKESEKDTEVLMSALSAMQDK--N-QHLE------ 607 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHH--H-HHHH------
Confidence 34455677778888888888888888888888888443211 111 22122334333333332221 0 0000
Q ss_pred CCCCCCCcchHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002498 713 YTTPTGQSNEKSL--QKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSL 771 (915)
Q Consensus 713 ~~~~~~~~~~~~~--~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~ 771 (915)
+.+ -.+|..+ +...|.+++++++.......+.+.|+..|+.++...-
T Consensus 608 ----------~sLsaEtriKld--LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 608 ----------NSLSAETRIKLD--LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred ----------HhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 2223322 3667899999999999999999999999999765543
No 81
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.17 E-value=0.81 Score=53.46 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 002498 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (915)
Q Consensus 605 ~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE 684 (915)
..++.+...++.-+...+. +|++.=+-.....|.....+-..+..|+...++.+....+=+-....----|+|.+.+
T Consensus 547 ~~le~~~~a~qat~d~a~~---Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 547 AALEAQALAEQATNDEARS---DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQA 623 (961)
T ss_pred HHHHHHHHHHHHhhhhhhh---hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444332 4444444444556666666666777777777776666666654444334555555555
Q ss_pred HHHHHHHH
Q 002498 685 AAIATKRL 692 (915)
Q Consensus 685 ~~a~~k~L 692 (915)
+.....+|
T Consensus 624 aE~R~eel 631 (961)
T KOG4673|consen 624 AERRCEEL 631 (961)
T ss_pred HHHHHHHH
Confidence 55444443
No 82
>PRK01156 chromosome segregation protein; Provisional
Probab=97.07 E-value=1.8 Score=55.53 Aligned_cols=7 Identities=14% Similarity=0.710 Sum_probs=2.7
Q ss_pred eEEEEeh
Q 002498 131 FQLHVSF 137 (915)
Q Consensus 131 ~~v~vS~ 137 (915)
+.|.+.|
T Consensus 67 ~~V~l~f 73 (895)
T PRK01156 67 LEVELEF 73 (895)
T ss_pred EEEEEEE
Confidence 3344433
No 83
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.91 Score=51.77 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002498 378 SSDMQKLRQQLKYLQAELCA 397 (915)
Q Consensus 378 ~~~i~~L~~ei~~Lk~eL~~ 397 (915)
...+..|+.+|..|-.+|..
T Consensus 7 eq~ve~lr~eierLT~el~q 26 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQ 26 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45678899999999988873
No 84
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.04 E-value=0.65 Score=50.11 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002498 539 ELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (915)
Q Consensus 539 ~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~ 596 (915)
.|...|..|+.+...+...+..+..++.+..+.|..+-|.-+.-|-+++..|..+++.
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~ 196 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRR 196 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443333333333333333444555666666666666666665555544433
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.95 E-value=1.2 Score=51.60 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002498 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (915)
Q Consensus 606 k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~ 685 (915)
..|.++..|+.+..+|+.+ ++++.==-++.++....+.+..|+++.+..+..+....+-.++.+.+..---++.+.-+.
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~ 383 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQ-IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444 233211117778888888888888888888888888888888877777777777788888
Q ss_pred HHHHHHHHHH
Q 002498 686 AIATKRLKEL 695 (915)
Q Consensus 686 ~a~~k~Lke~ 695 (915)
..++.+++=.
T Consensus 384 ~~l~~~i~l~ 393 (581)
T KOG0995|consen 384 NSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHH
Confidence 8888888755
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=1.7 Score=53.21 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 738 NVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 738 ~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
.++.++..+.++...+..++..-.++++.
T Consensus 988 mle~~E~~~~~lk~k~~~Ie~Dk~kI~kt 1016 (1174)
T KOG0933|consen 988 MLERAEEKEAALKTKKEIIEKDKSKIKKT 1016 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 57778888888888888888887777663
No 87
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=1.5 Score=52.11 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKK 655 (915)
Q Consensus 616 ~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk 655 (915)
.+|..+.+.|.+|.++=+- +|+..+-+|+.--+.
T Consensus 393 keie~rEaar~ElEkqRql------ewErar~qem~~Qk~ 426 (1118)
T KOG1029|consen 393 KEIERREAAREELEKQRQL------EWERARRQEMLNQKN 426 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhh
Confidence 3556666666666443333 455555555544333
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.82 E-value=1.9 Score=51.96 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHH
Q 002498 540 LEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQK-------HKSDEAAK 612 (915)
Q Consensus 540 Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k-------~k~e~~~~ 612 (915)
|..++..|.++++.|..++...-. .+..+..+..+.+.+|.+||..+..++....++.+|...- .+.-.+-+
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 333444444444444443333111 1224566667778888888888776665544444433211 12222334
Q ss_pred HHHHHHHHHHHHHHHH
Q 002498 613 RLQAEIQSIKAQKVQL 628 (915)
Q Consensus 613 ~l~~ei~~lk~~k~~L 628 (915)
.|++.+.+|....|.|
T Consensus 164 eLK~QL~Elq~~Fv~l 179 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKL 179 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555555
No 89
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.73 E-value=2.7 Score=52.41 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Q 002498 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK---QEAEQFRQWKASREKELLKLKKE 656 (915)
Q Consensus 580 l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k---~e~~~~~~~~~~~~kE~~~Lkk~ 656 (915)
+..++++|.++++.- ...+...+.+.+.+++.|..+++.+..+.+.|-.... ++...-....-..+.++.+|+++
T Consensus 374 ~d~l~k~I~~~~~~~--~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~ 451 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQT--NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKK 451 (1074)
T ss_pred HHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345555555555433 3445556666666666666666666655444433322 23333333333455677788877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002498 657 GRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (915)
Q Consensus 657 ~rk~~~~~~kle~~~~~q~~~l~rk~eE~ 685 (915)
-+-....|..|..-..-+.++.=..+-++
T Consensus 452 i~~~~~~l~~lk~~k~dkvs~FG~~m~~l 480 (1074)
T KOG0250|consen 452 IENISEELKDLKKTKTDKVSAFGPNMPQL 480 (1074)
T ss_pred HHHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 77777777777643333344444444333
No 90
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=2.9 Score=52.27 Aligned_cols=38 Identities=34% Similarity=0.415 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002498 629 QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (915)
Q Consensus 629 ~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~k 666 (915)
+..++.+....+....+..+++.++++..+.....+.+
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~ 581 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNK 581 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34455555566666666677777777776644444333
No 91
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.55 E-value=2.9 Score=50.48 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 002498 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (915)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~ 703 (915)
.....++..|+++-......+..++-+.. .-+.+++...+..|-+.++++..+.
T Consensus 252 ~~i~~~i~~l~~~i~~~~~~l~~l~l~~~------~~~~~~i~~~Id~Lyd~lekE~~A~ 305 (569)
T PRK04778 252 LDIEKEIQDLKEQIDENLALLEELDLDEA------EEKNEEIQERIDQLYDILEREVKAR 305 (569)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766666666663322 2344555666666666666665443
No 92
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0033 Score=71.19 Aligned_cols=93 Identities=25% Similarity=0.452 Sum_probs=61.8
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHH----HHHHHHHHH
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glip----r~~~~lF~~ 121 (915)
..|..-.-|.|.+.++ ..+..+|+++-.|.-.-++ .|.|||||||||..=...-..|-||- -....||..
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 3577778898877644 3457788888888766554 69999999999932100111122221 245667777
Q ss_pred HHhccccceeEEEEeheehhhhh
Q 002498 122 IETLRHQMEFQLHVSFIEILKEE 144 (915)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIy~e~ 144 (915)
+...-++..+...||||..|.-+
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcc
Confidence 77766667788899999888654
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.45 E-value=3.3 Score=49.97 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=13.0
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
+..+-+|++|||||..+
T Consensus 28 g~~~i~G~NG~GKStll 44 (562)
T PHA02562 28 KKTLITGKNGAGKSTML 44 (562)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34556899999998766
No 94
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.36 E-value=3.7 Score=49.59 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhh--hhHHHHHHHHHHHHHHHHHHHH---HHHHHHH-
Q 002498 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKM--QDGHTLKLKALEAQILELKKKQ---ESQVELL- 601 (915)
Q Consensus 528 ~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Kl--k~~~e~~l~~le~~l~~L~~~~---~~~~~l~- 601 (915)
.+....+.+|.+|+..+..++.......+-+..++.++.....-+ ..++..+|.+|+.-+-.|..+. ...-..+
T Consensus 115 ~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq 194 (617)
T PF15070_consen 115 RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQ 194 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 455566778888888887777664443333333333333222222 2233445666666555444332 1111111
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 002498 602 KQKHKSDEAAKRLQAEIQSIK 622 (915)
Q Consensus 602 k~k~k~e~~~~~l~~ei~~lk 622 (915)
-.++.+..++..++..+..++
T Consensus 195 ~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 195 HVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 113344445555555555544
No 95
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.34 E-value=2.4 Score=51.13 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 534 GKKIMELEEEKRIVQQERDRLLAEIE 559 (915)
Q Consensus 534 ~~ki~~Le~ei~~le~e~~~l~~~l~ 559 (915)
++.+..++.++..++.....+...+.
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.27 E-value=2.8 Score=47.38 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQE 550 (915)
Q Consensus 496 ~q~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e 550 (915)
...+|+.+|.+++.++...+..+.... .........|..++..+..|+.+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~-----~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETA-----DDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhhHHHHHHHHHHHHHH
Confidence 445666677777776666666665544 34444445555555555554433
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.27 E-value=7.2 Score=51.98 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhHHHHHH
Q 002498 796 ERIASLENMLNMSSKALVEMASQLSEAEERE 826 (915)
Q Consensus 796 ~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 826 (915)
+.+.+|+............+..+..++..++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i 595 (1486)
T PRK04863 565 ARLESLSESVSEARERRMALRQQLEQLQARI 595 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444444444444443
No 98
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.10 E-value=2.7 Score=45.51 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002498 724 SLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVD 767 (915)
Q Consensus 724 ~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~ 767 (915)
+....+.+|-.+...--.++..+..-++.|..++..+..-..-+
T Consensus 255 k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEssl 298 (310)
T PF09755_consen 255 KMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSL 298 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666655565666667788888888888888887655433
No 99
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=7.1 Score=48.23 Aligned_cols=326 Identities=16% Similarity=0.133 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l 614 (915)
+.+...+.++...+.+.+.+..+|+.++. ....-..++++++.++.+|---. =+..+.+..++......+...+..+
T Consensus 677 ~~l~~~~~~~~~~q~el~~le~eL~~le~-~~~kf~~l~~ql~l~~~~l~l~~--~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 677 QKLKQAQKELRAIQKELEALERELKSLEA-QSQKFRDLKQQLELKLHELALLE--KRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHhcChHhhHHHHHHHHHHHHHHH
Confidence 56777888888889999999998888653 22344456666655544443221 1123333444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002498 615 QAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKE 694 (915)
Q Consensus 615 ~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke 694 (915)
..+|.+.....-.-+-+++.=-.....|+..+++++..|.++-... ..........++++..+.....-+..+
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~-------k~~~e~~~~~~ek~~~e~e~l~lE~e~ 826 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTA-------KQRAEESSKELEKRENEYERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443332222222222112334455555555555554433322 112222233344444443332222221
Q ss_pred HHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 002498 695 LLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEV-SANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNG 773 (915)
Q Consensus 695 ~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~-~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~ 773 (915)
. +.+. +.. +.+-.-+...++. ..++.++...+........+..+++...+..+-.....
T Consensus 827 l-~~e~---~~~----------------k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~ 886 (1174)
T KOG0933|consen 827 L-EKEI---SSL----------------KQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTE 886 (1174)
T ss_pred H-HHHH---HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHH
Confidence 1 1110 000 1111112222222 22566666666666667777777776666543322110
Q ss_pred C--CCCCCCCcc--cccccCChhHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHH-------Hhh-hcccccc-cccc
Q 002498 774 H--SPQRGKNGH--SRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERE-------RAL-VGRGRWN-HLRF 840 (915)
Q Consensus 774 ~--~~~~~~~~~--~~~~~l~~~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~-~~~~~~~-~~~~ 840 (915)
- -.+...+.. ....+ ..+..|+.++........++.+.+..+..+. ..| .+++.+| .-.+
T Consensus 887 i~~~~~~~e~~~~e~~~~~-------l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~ 959 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGE-------LERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD 959 (1174)
T ss_pred HhhhhhHHHHHHHHhhccc-------chHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence 0 000000000 00001 1233333333333333333333333333222 111 1123332 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 841 MGDAKNLLQYMFNVAAETRFQLWEK-DTEIKEIKEQLNDLVALLKQSEAQRKELVKQQ 897 (915)
Q Consensus 841 l~eak~~l~~l~~~~~~~~~ql~~~-~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~ 897 (915)
.-+|+..+++|.......+..+.-. -..|...+....++..+..-.+....-+..-.
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI 1017 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTI 1017 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7889999999988888777666533 33356666666666666655555555444433
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.76 E-value=4.8 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.233 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 002498 644 ASREKELLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~~~~kle 668 (915)
...++.+..|+.....+..+|.+++
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445555566666666666666
No 101
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.70 E-value=0.0095 Score=73.83 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002498 380 DMQKLRQQLKYLQAEL 395 (915)
Q Consensus 380 ~i~~L~~ei~~Lk~eL 395 (915)
++..++.+|..|+.++
T Consensus 62 e~~~~k~~l~~Le~e~ 77 (722)
T PF05557_consen 62 ELIELKAQLNQLEYEL 77 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555554444
No 102
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.57 E-value=0.92 Score=47.45 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=48.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCC-------CCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002498 676 MVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTG-------YTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEK 748 (915)
Q Consensus 676 ~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~ 748 (915)
+-.++.++-+..-++++|..||+-+.+....++.-.. +..|-+. ..+- .-...+++...|..
T Consensus 105 ~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp------~q~~-----~~sk~e~L~ekynk 173 (307)
T PF10481_consen 105 NSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTP------SQYY-----SDSKYEELQEKYNK 173 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCCh------hhhh-----hhhhHHHHHHHHHH
Confidence 3344556666677888888888655443322211111 1222111 0000 12356777889999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002498 749 QSQVQAALADELTILKQV 766 (915)
Q Consensus 749 ~~e~r~~l~~el~~L~~~ 766 (915)
-.++|+.|++|+..|..+
T Consensus 174 eveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 174 EVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHhhHHHHHHHHhcc
Confidence 999999999999998864
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.54 E-value=4 Score=43.31 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 410 LKGRIAWLEATNEDLCQELHEYRS 433 (915)
Q Consensus 410 l~~~i~~L~~e~~~L~~eL~e~~~ 433 (915)
...+....+.+...|...+.....
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~ 50 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEE 50 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.52 E-value=2.3 Score=44.71 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 002498 677 VLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 677 ~l~rk~eE~~a~~k~Lke~le 697 (915)
.+..+.......+.+|++.+.
T Consensus 153 ~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 153 EIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 333334444444444544443
No 105
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.45 E-value=3.7 Score=45.42 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKK 655 (915)
Q Consensus 611 ~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk 655 (915)
+..|+.||..++.....-++.-.++..+++..+....-|..+|.+
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQr 299 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQR 299 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445677777777777777777777777777777777767666654
No 106
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.38 E-value=0.013 Score=72.58 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 879 LVALLKQSEAQRKELVKQQRMREQAV 904 (915)
Q Consensus 879 l~~~~~~~e~e~~~l~~~~~~~~~~~ 904 (915)
+..++..++.++..|..++...+..+
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433333
No 107
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=11 Score=47.09 Aligned_cols=136 Identities=17% Similarity=0.300 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------------------cchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGD-------------------IDTEALRHHFG---KKIMELEEEKRIVQQERDRLL 555 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~-------------------~~~~~~~~~~~---~ki~~Le~ei~~le~e~~~l~ 555 (915)
.++..++..++..+..++..+..... .++...+.+|. ..|..|++++..+..-+..+.
T Consensus 265 ~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fe 344 (1141)
T KOG0018|consen 265 GKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFE 344 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666554110 12233344443 457777788887777777777
Q ss_pred HHHHhhccCCc---chhhhhhhHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 556 AEIENLAANSD---GHTQKMQDGHTLK----LKALEAQILE----LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 556 ~~l~~~ee~~~---~~~~Klk~~~e~~----l~~le~~l~~----L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
++++...-... +...-..++|+.- ..+-..+|.. .+-.+............++.+++.+...+....++
T Consensus 345 kei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~ 424 (1141)
T KOG0018|consen 345 KEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKR 424 (1141)
T ss_pred HHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766432111 0000111111110 1111223333 33333334444555678888888888888777777
Q ss_pred HHHHHHHHH
Q 002498 625 KVQLQNKIK 633 (915)
Q Consensus 625 k~~L~~~~k 633 (915)
...|.-.+.
T Consensus 425 ~~~L~~~i~ 433 (1141)
T KOG0018|consen 425 RNKLAAKIT 433 (1141)
T ss_pred HHHHHHHHH
Confidence 777765555
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.80 E-value=14 Score=45.27 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=27.7
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 372 VNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELH 429 (915)
Q Consensus 372 vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~ 429 (915)
.+.|+....+..+-+++..++..+.. ...+.+..+.+++..+..+.-++.
T Consensus 326 sqkd~~~~~~~~~~~e~~~~~~~l~~--------~~~ear~~~~q~~~ql~~le~~~~ 375 (980)
T KOG0980|consen 326 SQKDPRELQIEQLSREVAQLKAQLEN--------LKEEARRRIEQYENQLLALEGELQ 375 (980)
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666677777777777766542 133344455555555555544444
No 109
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.77 E-value=0.015 Score=61.90 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=30.6
Q ss_pred cccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 64 vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+-+-.++|+|..+..--++.|+..||||||||+||
T Consensus 108 ~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 108 LEELGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 33344678999999999999999999999999999
No 110
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.67 E-value=12 Score=44.08 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchH
Q 002498 644 ASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEK 723 (915)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~ 723 (915)
-+++++|++|-..-...+.-.......+..|.+-|-++.......+.+|++.|..+ ..
T Consensus 288 ~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~----sD------------------ 345 (629)
T KOG0963|consen 288 NQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR----SD------------------ 345 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cc------------------
Confidence 34888899998888888888888888899999999999999999999999998843 23
Q ss_pred HHHHHHHHHHHHHHhHH-----------HHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCCh
Q 002498 724 SLQKWLEHELEVSANVH-----------EVRFKYEKQ-SQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSP 791 (915)
Q Consensus 724 ~~~~~l~~Ele~~~~l~-----------e~~~~~~~~-~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~ 791 (915)
...+..||.++..++ ++-..++.+ ++.++++..+++.|+...... .+ .+.+
T Consensus 346 --YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~----~~--------~~~~--- 408 (629)
T KOG0963|consen 346 --YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGL----SG--------RITE--- 408 (629)
T ss_pred --HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcccccc----ch--------hHHH---
Confidence 334455555544221 223455554 788899999999998742111 11 1111
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhHHH
Q 002498 792 NARMERIASLENMLNMSSKALVEMASQLSEAE 823 (915)
Q Consensus 792 ~~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~ 823 (915)
-...+.++.......++-+..+++-+...+
T Consensus 409 --~~~~~~el~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 409 --LSKKGEELEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred --HHhhhhhhHHHHHHHHHHHHHHHhhHhhcc
Confidence 124455556666666666655555444333
No 111
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.45 E-value=19 Score=45.34 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=14.8
Q ss_pred CCCceEEeeccCCCCccccc
Q 002498 79 GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (915)
|-+.. |..|+.|||||-.|
T Consensus 61 g~~vN-fI~G~NGSGKSAIl 79 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAIL 79 (1074)
T ss_pred CCCce-EeecCCCCcHHHHH
Confidence 44444 67899999999877
No 112
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=94.42 E-value=11 Score=42.64 Aligned_cols=113 Identities=26% Similarity=0.255 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhH
Q 002498 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR---KNEFERHKLEALNQRQKMVLQRKT 682 (915)
Q Consensus 606 k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~r---k~~~~~~kle~~~~~q~~~l~rk~ 682 (915)
....+-..|+-++..+|...+.|+ ++|...-+++.|=+.+--.-++ +.+.++.+|+ .|+..+
T Consensus 408 Esr~eKetLqlelkK~k~nyv~LQ-------Ery~~eiQqKnksvsqclEmdk~LskKeeeverLQ--------~lkgel 472 (527)
T PF15066_consen 408 ESRNEKETLQLELKKIKANYVHLQ-------ERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ--------QLKGEL 472 (527)
T ss_pred HHHhhHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH--------HHHHHH
Confidence 334445678888888888888887 4444444444444443332222 3333444444 223333
Q ss_pred HHHH-HHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 683 EEAA-IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELT 761 (915)
Q Consensus 683 eE~~-a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~ 761 (915)
|.+. .++..||..-+ ..|-+.+.-.+|...+-..-+++|.+|-..+.
T Consensus 473 Ekat~SALdlLkrEKe--------------------------------~~EqefLslqeEfQk~ekenl~ERqkLKs~le 520 (527)
T PF15066_consen 473 EKATTSALDLLKREKE--------------------------------TREQEFLSLQEEFQKHEKENLEERQKLKSRLE 520 (527)
T ss_pred HHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333 34444443322 12333344456666666777788888888877
Q ss_pred HHHh
Q 002498 762 ILKQ 765 (915)
Q Consensus 762 ~L~~ 765 (915)
+|-.
T Consensus 521 KLva 524 (527)
T PF15066_consen 521 KLVA 524 (527)
T ss_pred HHHH
Confidence 7644
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.27 E-value=5.2 Score=42.10 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 537 IMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 537 i~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
+..|+.++..++.++.++...+..
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 114
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.05 E-value=22 Score=44.64 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002498 662 FERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 662 ~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le 697 (915)
..|.-|+.......+.|-++.-++..+.+|++..|.
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 334445544555566677777777777777776654
No 115
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=9.8 Score=40.54 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002498 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (915)
Q Consensus 580 l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk 659 (915)
+.+|=.++.-+......-..+......-...+..-+..+.+-..+.+-|++.+-.....+...+..+..=+..|+-+..+
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665544443333333333333333333333333333333444444444455555566666666667777777777
Q ss_pred hHHHHHHHH
Q 002498 660 NEFERHKLE 668 (915)
Q Consensus 660 ~~~~~~kle 668 (915)
...++.-|+
T Consensus 209 ~~~e~a~l~ 217 (265)
T COG3883 209 ALGEKAALE 217 (265)
T ss_pred hHHHHHHHH
Confidence 777766666
No 116
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.00 E-value=7.6 Score=39.09 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 500 MDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~--~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ 561 (915)
+..++.+|+.-+...|+.-..+.. +.++...+++...|..|+.+...+..+++.+...+..+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 345555555544444444443331 22334455555666666666666666666666655554
No 117
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=23 Score=44.39 Aligned_cols=92 Identities=16% Similarity=0.279 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002498 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (915)
Q Consensus 590 L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~ 669 (915)
+....+++..+.+...+.+..+......+.+ +.+|+ +.+++..+.+..=...++.+...++...++...+.+++
T Consensus 257 i~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e----rp~li-~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~e- 330 (1141)
T KOG0018|consen 257 IRVRKKERGKIRRELQKVDKKISEKEEKLAE----RPELI-KVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLE- 330 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHh-hcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHH-
Confidence 4444455566777777777777777776666 22222 33455545444445556666666666666666666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002498 670 LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 670 ~~~~q~~~l~rk~eE~~a~~k~Lke~le 697 (915)
+.+.++.....+..+..+
T Consensus 331 ----------k~l~av~~~~~~fekei~ 348 (1141)
T KOG0018|consen 331 ----------KELKAVEGAKEEFEKEIE 348 (1141)
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 345566666666555544
No 118
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.87 E-value=19 Score=43.32 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 738 NVHEVRFKYEKQSQVQAALADELTILKQ 765 (915)
Q Consensus 738 ~l~e~~~~~~~~~e~r~~l~~el~~L~~ 765 (915)
.+......+....+..+.+..++..+..
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777888888888888888766
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.80 E-value=6.5 Score=37.64 Aligned_cols=126 Identities=19% Similarity=0.272 Sum_probs=73.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHH
Q 002498 604 KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTE 683 (915)
Q Consensus 604 k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~e 683 (915)
+..+..++..+...+.....+...+...++......+.....+++|+.. +...+..|. -|+....
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~-------Ha~~~~~L~--------~lr~e~~ 69 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVK-------HAEDIKELQ--------QLREELQ 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHH--------HHHHHHH
Confidence 3344555566666666666666666677777777777777777777652 222222222 2222333
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 684 EAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTI 762 (915)
Q Consensus 684 E~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~ 762 (915)
++...+..|+...+.-+..-. .....|-.++-.....+.++...++.+...|+-|-.+|..
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~------------------~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELE------------------ESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444432221100 2336677777766777888888999999999888888754
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.79 E-value=0.027 Score=59.12 Aligned_cols=48 Identities=25% Similarity=0.475 Sum_probs=28.2
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.||||.-+.. .. +...|.. +..+...--..|| .+|-||++|+||||-|
T Consensus 4 ~~tFdnfv~g-~~-N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 4 KYTFDNFVVG-ES-NELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLL 51 (219)
T ss_dssp T-SCCCS--T-TT-THHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHH
T ss_pred CCccccCCcC-Cc-HHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHH
Confidence 6999998743 23 4455532 3344444112234 4788999999999987
No 121
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.71 E-value=15 Score=41.60 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002498 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEF 662 (915)
Q Consensus 608 e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~ 662 (915)
+.-+..-.++|+.|++-|.+|-+....-...++..+..++.|...|..+-.+++.
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ek 506 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEK 506 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566666666666555555566666666666666666655554433
No 122
>PRK06893 DNA replication initiation factor; Validated
Probab=93.71 E-value=0.029 Score=59.31 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.0
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 478999999532 2 21 1223333444578888899999999999998
No 123
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.64 E-value=21 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 002498 676 MVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 676 ~~l~rk~eE~~a~~k~Lke~le 697 (915)
..+.++++.+......+.+.++
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~ 368 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIE 368 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554
No 124
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.62 E-value=21 Score=43.00 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002498 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (915)
Q Consensus 532 ~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~ 611 (915)
.+..++..+..+++.-++...+|..++..+... .-+.-|-.+|-+.=+. .+|.+.+..++..--+.+..++
T Consensus 451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~------~~Rs~Yt~RIlEIv~N---I~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 451 ELREEIKEIEEEIRQKEELYKQLVKELEKLPKD------VNRSAYTRRILEIVKN---IRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 444666777777777777777777777775322 2366787888887777 6666666555554444444444
Q ss_pred HHHHHH
Q 002498 612 KRLQAE 617 (915)
Q Consensus 612 ~~l~~e 617 (915)
..+...
T Consensus 522 N~l~gk 527 (594)
T PF05667_consen 522 NSLTGK 527 (594)
T ss_pred HHHHHH
Confidence 444333
No 125
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.52 E-value=15 Score=40.92 Aligned_cols=203 Identities=19% Similarity=0.227 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC--CcchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Q 002498 539 ELEEEKRIVQQERDRLLAEIENLAAN--SDGHTQKMQDGHTLKLKALEAQILELKKKQ-ESQVELLKQKHKSDEAAKRLQ 615 (915)
Q Consensus 539 ~Le~ei~~le~e~~~l~~~l~~~ee~--~~~~~~Klk~~~e~~l~~le~~l~~L~~~~-~~~~~l~k~k~k~e~~~~~l~ 615 (915)
.|-++|..+.++...+-..+.- +++ .+....|++.-+..+ -.||.- |.+++ =-..++.+-.+|++.+-..-+
T Consensus 104 tLlkkiqal~keketla~~Ye~-eee~lTn~Lsrkl~qLr~ek-~~lEq~---leqeqef~vnKlm~ki~Klen~t~~kq 178 (552)
T KOG2129|consen 104 TLLKKIQALFKEKETLATVYEV-EEEFLTNPLSRKLKQLRHEK-LPLEQL---LEQEQEFFVNKLMNKIRKLENKTLLKQ 178 (552)
T ss_pred HHHHHHHHhhccccccchhhhh-hhhhccCchhHHHHHHHhhh-ccHHHH---HHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 6777888888777766665554 221 222222222211011 011111 12222 224667777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002498 616 AEIQSIKAQKVQLQNKIKQEAEQF--RQWKAS--REKELLKLKKEGR------KNEFERHKLEALNQRQKMVLQRKTEEA 685 (915)
Q Consensus 616 ~ei~~lk~~k~~L~~~~k~e~~~~--~~~~~~--~~kE~~~Lkk~~r------k~~~~~~kle~~~~~q~~~l~rk~eE~ 685 (915)
..+++|++.+|+|...+.+|.+-. +.|+.. ++.|--.|.+|-. -.=..|.+.-..+---...+++-+.-+
T Consensus 179 ~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l 258 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKL 258 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHH
Confidence 889999999999998888655433 444431 2222222222211 000111111111112233455555556
Q ss_pred HHHHHHHHHHHHHh-hhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 686 AIATKRLKELLEAR-KSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILK 764 (915)
Q Consensus 686 ~a~~k~Lke~le~e-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~ 764 (915)
.+.+.||+-.+.+. +... ++..+...+|.....+.......+..-++.|..++..+..-+
T Consensus 259 ~~EveRlrt~l~~Aqk~~~-------------------ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQ-------------------EKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE 319 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66677777776532 2111 566788888888888888888888888899988988887644
Q ss_pred h
Q 002498 765 Q 765 (915)
Q Consensus 765 ~ 765 (915)
.
T Consensus 320 s 320 (552)
T KOG2129|consen 320 S 320 (552)
T ss_pred H
Confidence 3
No 126
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.36 E-value=4.5 Score=48.56 Aligned_cols=150 Identities=20% Similarity=0.311 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchh
Q 002498 497 QNTMDKELNELNKRLEQKESEMKLFG-------DIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHT 569 (915)
Q Consensus 497 q~~l~~el~eL~~~Le~kE~~~~kl~-------~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~ 569 (915)
...|...|+-||.+|.+.|...+... .-.++.+...++.++.+..+....|+...++|++-+.+..++.
T Consensus 396 NaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En---- 471 (861)
T PF15254_consen 396 NAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN---- 471 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH----
Confidence 46788899999999998876654321 1235567778888898888888899988888888887743211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQS----IKAQKVQLQNKIKQEAEQFRQWKAS 645 (915)
Q Consensus 570 ~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~----lk~~k~~L~~~~k~e~~~~~~~~~~ 645 (915)
++ +..-+++-+.+ +.+.|+..+.+...++-|+.+ +|.-+-.|. .-..|..-+.-.=.+
T Consensus 472 k~----~~~~~~ekd~~-------------l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe-~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 472 KR----LRKMFQEKDQE-------------LLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE-ASEKENQILGITLRQ 533 (861)
T ss_pred HH----HHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHhhhhHhhhHHHH
Confidence 11 12223333333 333344444444444444433 333333331 111334444445555
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHH
Q 002498 646 REKELLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 646 ~~kE~~~Lkk~~rk~~~~~~kle 668 (915)
+..||..|+.--|-++.-|.++=
T Consensus 534 rDaEi~RL~eLtR~LQ~Sma~lL 556 (861)
T PF15254_consen 534 RDAEIERLRELTRTLQNSMAKLL 556 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666655554
No 127
>PRK09039 hypothetical protein; Validated
Probab=93.19 E-value=13 Score=41.81 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 002498 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (915)
Q Consensus 530 ~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~ 609 (915)
...++..+..|..++..++.+++.|...+....+ .....+.++..++.++..++ ..-...--
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~--------~~~~~~~~~~~l~~~L~~~k----------~~~se~~~ 137 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAG--------AGAAAEGRAGELAQELDSEK----------QVSARALA 137 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------hcchHHHHHHHHHHHHHHHH----------HHHHHhhH
Confidence 3456677888888888888888877776553210 00122344444444422222 12223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002498 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIAT 689 (915)
Q Consensus 610 ~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~ 689 (915)
++..|+.+|+.|+.+...|. -+|..++.+++..+..+..|+ ..-...|.++..++..-.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le------------------~~L~~ae~~~~~~~~~i~~L~---~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALE------------------AALDASEKRDRESQAKIADLG---RRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhH
Confidence 46666777777777655443 333444444444444444443 333444545666655554
Q ss_pred HHH
Q 002498 690 KRL 692 (915)
Q Consensus 690 k~L 692 (915)
.+.
T Consensus 197 ~~~ 199 (343)
T PRK09039 197 SEF 199 (343)
T ss_pred HHH
Confidence 444
No 128
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.14 E-value=24 Score=42.15 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 844 AKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQ 896 (915)
Q Consensus 844 ak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~ 896 (915)
.-..|+.+...+...+......+.++..+..........+..++..+.....+
T Consensus 370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke 422 (522)
T PF05701_consen 370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKE 422 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443333
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.05 E-value=9.3 Score=37.14 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 002498 575 GHTLKLKALEAQILE 589 (915)
Q Consensus 575 ~~e~~l~~le~~l~~ 589 (915)
-+..+++.||.++..
T Consensus 77 ~l~rriq~LEeele~ 91 (143)
T PF12718_consen 77 QLNRRIQLLEEELEE 91 (143)
T ss_pred HHHhhHHHHHHHHHH
Confidence 566777888877443
No 130
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.04 E-value=22 Score=41.56 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENL 561 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ 561 (915)
.++..|++.+..|+....++..-+..+
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~ 285 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQM 285 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556667777777777777766655554
No 131
>PRK06620 hypothetical protein; Validated
Probab=92.90 E-value=0.028 Score=58.68 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=31.7
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCC---ceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n---~ti~ayGqtgSGKT~Tm 98 (915)
..|+||..+.. .+ +...|..+. .+... -|+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg-~~-N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVS-SS-NDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEec-cc-HHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 47899998853 33 455554432 23221 1444 35899999999999999
No 132
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.70 E-value=0.033 Score=68.99 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA 636 (915)
Q Consensus 602 k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~ 636 (915)
+.+.+++.+.+..+..+..++.+..++++.+.+..
T Consensus 495 ~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~ 529 (713)
T PF05622_consen 495 RRKEKLEEENREANEKILELQSQLEELQKSLQEQG 529 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555666666666666665555433
No 133
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.64 E-value=30 Score=42.04 Aligned_cols=94 Identities=12% Similarity=0.167 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002498 793 ARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEI 872 (915)
Q Consensus 793 ~~~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~ 872 (915)
.....+..|.+++...+..+..+..+++.+++...+ .+ .+.-+.+.|. .++....++.+.+..++...+.+.
T Consensus 852 ~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads---e~---l~ka~~~~k~--~nl~lki~s~kqeqee~~v~~~~~ 923 (970)
T KOG0946|consen 852 LIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS---ET---LSKALKTVKS--ENLSLKIVSNKQEQEELLVLLADQ 923 (970)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc---hH---HHHHHHHhhc--ccchhcccchhhhHHHHHHHHhhH
Confidence 344566667777777777776666555554432210 00 1111111111 334444445555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002498 873 KEQLNDLVALLKQSEAQRKELV 894 (915)
Q Consensus 873 ~~~~~~l~~~~~~~e~e~~~l~ 894 (915)
...+.++...++++.+-.++..
T Consensus 924 ~~~i~alk~~l~dL~q~~eeie 945 (970)
T KOG0946|consen 924 KEKIQALKEALEDLNQPVEEIE 945 (970)
T ss_pred HHHHHHHHHHHHHhCCChhhHH
Confidence 6666666666666555444433
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.55 E-value=8.5 Score=42.94 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002498 612 KRLQAEIQSIKAQKVQL 628 (915)
Q Consensus 612 ~~l~~ei~~lk~~k~~L 628 (915)
..+...|..+..++.++
T Consensus 240 ~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 240 EELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444444
No 135
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.16 E-value=32 Score=41.13 Aligned_cols=162 Identities=18% Similarity=0.165 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc---chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002498 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSD---GHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSD 608 (915)
Q Consensus 532 ~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~---~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e 608 (915)
....++..|..+|..+...++.........++... .........|+..+.+.+.++..|+.....-..++..-....
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~ 248 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS 248 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477888888888888877765433222111100 011122233444455555555555544433233322222233
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 002498 609 EAAKRLQAEIQSIKAQKVQL--------------QNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ 674 (915)
Q Consensus 609 ~~~~~l~~ei~~lk~~k~~L--------------~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q 674 (915)
..+..|+.++......+... +..++.|....+..=....-|+..|+..-.-+..++.+....
T Consensus 249 ~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e---- 324 (522)
T PF05701_consen 249 AELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE---- 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44445555554444333222 333444444444444444444444444444444433333321
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002498 675 KMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 675 ~~~l~rk~eE~~a~~k~Lke~le 697 (915)
-..|+.+...+...+..|...|.
T Consensus 325 l~~lke~e~~a~~~v~~L~~eL~ 347 (522)
T PF05701_consen 325 LERLKEREKEASSEVSSLEAELN 347 (522)
T ss_pred HHHHHHHHHHHHhHHhhHHHHHH
Confidence 23344444455555555555544
No 136
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.11 E-value=19 Score=42.68 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------Ccchh
Q 002498 500 MDKELNELNKRLEQKESEMKLFGDI-D--TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-------SDGHT 569 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~~-~--~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~-------~~~~~ 569 (915)
++.++..++.+|+..+..+..+... . .......+..++..++.+....+.++..+...+..+... .....
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~ 245 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGS 245 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCccc
Confidence 4556666677777666666665421 1 111222344666777777776666666666555544311 00001
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH
Q 002498 570 QKMQDGHTLKLKALEAQILELK 591 (915)
Q Consensus 570 ~Klk~~~e~~l~~le~~l~~L~ 591 (915)
...-..+..++.+++.++..|.
T Consensus 246 ~~~~~~l~~~l~~l~~~l~~l~ 267 (498)
T TIGR03007 246 SVANSELDGRIEALEKQLDALR 267 (498)
T ss_pred ccCCCchHHHHHHHHHHHHHHH
Confidence 1122345567788888877665
No 137
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=92.11 E-value=16 Score=37.75 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002498 541 EEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (915)
Q Consensus 541 e~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~ 620 (915)
..+....+.+++++...+.. ....++..+-+.+..+..|+.+.+....+.+.|...+.++..|+.++..
T Consensus 28 ~~~~~~i~~~r~~l~s~y~~-----------q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 28 IQQLEEIQRERQELVSRYAK-----------QTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554433 1233445566677777788888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002498 621 IKAQKVQLQNKIK 633 (915)
Q Consensus 621 lk~~k~~L~~~~k 633 (915)
+...+.....+|+
T Consensus 97 ~~~e~~~~l~~~~ 109 (206)
T PF14988_consen 97 MRAEHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777654444
No 138
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=91.83 E-value=17 Score=37.47 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ-------------DGHTLKLKALEAQILELKKKQESQVELLKQ 603 (915)
Q Consensus 537 i~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk-------------~~~e~~l~~le~~l~~L~~~~~~~~~l~k~ 603 (915)
-.....++..+..+++.+..++.+++...++.-.++. +.+...+.+.... -.+..++...+
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~------l~~~eqry~aL 137 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEER------LKKEEQRYQAL 137 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 3344556667777777777777776644333222221 1111222222222 23345667888
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002498 604 KHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (915)
Q Consensus 604 k~k~e~~~~~l~~ei~~lk~~k~~L~ 629 (915)
|...+.++...+.+|.++++....-.
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~ 163 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAEL 163 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88888888888888888777755544
No 139
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.78 E-value=13 Score=36.04 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 531 HHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (915)
Q Consensus 531 ~~~~~ki~~Le~ei~~le~e~~~l~~~l~ 559 (915)
.+|+.++..|+.+....+...+.+...+.
T Consensus 111 e~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 111 EHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544443
No 140
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.77 E-value=16 Score=36.84 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRA 436 (915)
Q Consensus 407 ~~~l~~~i~~L~~e~~~L~~eL~e~~~~~~ 436 (915)
+..++.++..|+.+...-...+......+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~ 35 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLE 35 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 141
>PRK09087 hypothetical protein; Validated
Probab=91.76 E-value=0.071 Score=56.22 Aligned_cols=46 Identities=28% Similarity=0.257 Sum_probs=31.3
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||..+.. .+ +..+|. ++.....-.|..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~~-~~-N~~a~~-----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVT-ES-NRAAVS-----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeec-Cc-hHHHHH-----HHHhcccCCCCeEEEECCCCCCHHHHH
Confidence 46899998852 23 445665 333333223555899999999999999
No 142
>PRK09039 hypothetical protein; Validated
Probab=91.42 E-value=27 Score=39.24 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002498 644 ASREKELLKLKKEGRKNEFERHKLEALN 671 (915)
Q Consensus 644 ~~~~kE~~~Lkk~~rk~~~~~~kle~~~ 671 (915)
..++.+|..|+.+-...+.++.-.+...
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777666666666655443
No 143
>PRK11281 hypothetical protein; Provisional
Probab=91.42 E-value=56 Score=42.49 Aligned_cols=188 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHH
Q 002498 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA---EQF-RQWKASREKELL 651 (915)
Q Consensus 576 ~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~---~~~-~~~~~~~~kE~~ 651 (915)
.|+++.+++.+ |...+...+.....-..........+..+.+-..+..++.++++.-. +.. .......+-|..
T Consensus 126 LEq~L~q~~~~---Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 126 LESRLAQTLDQ---LQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 66666666666 44444444444444444444444444555554444444444443200 000 111122222222
Q ss_pred HHHHhhhhhHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCC-CCCCcchHHHHH
Q 002498 652 KLKKEGRKNEFER---HKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTT-PTGQSNEKSLQK 727 (915)
Q Consensus 652 ~Lkk~~rk~~~~~---~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 727 (915)
.|+-+-.-.+.++ ..+....+.|...+..++...+..+..|++.+-.++.......+....... .+......-++.
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~ 282 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQ 282 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHH
Confidence 2222222111111 222334455556666666666666666666654332111100000000000 000000112344
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 728 WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 728 ~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
.++........+......++.+..++......+..+.+.
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~ 321 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQS 321 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556677777777777777777666666666554
No 144
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.15 E-value=15 Score=35.42 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~e 562 (915)
.-+...+..|..+|+..+.....+. ........-+..|+.++..+..++..+..++.++.
T Consensus 20 dsle~~v~~LEreLe~~q~~~e~~~-----~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 20 DSLEDHVESLERELEMSQENKECLI-----LDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554443 22333334455666666666666666666666654
No 145
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.14 E-value=0.097 Score=60.16 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.1
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCcccccCC
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (915)
...+.+++..-++.|+.-||||||||+||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456677888899999999999999999943
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.01 E-value=0.073 Score=63.33 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=33.2
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||..+.. .+ +...| ..+..++...-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG-~s-N~~A~-aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIG-AS-NRFAH-AAAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCC-Cc-cHHHH-HHHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 46999987742 22 33344 3344555544456776 789999999999998
No 147
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.91 E-value=0.068 Score=66.19 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002498 746 YEKQSQVQAALADELTILK 764 (915)
Q Consensus 746 ~~~~~e~r~~l~~el~~L~ 764 (915)
+..+..++..+..+...|+
T Consensus 400 ~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 400 LEALEEEKERLQEERDSLR 418 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 148
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.86 E-value=51 Score=40.98 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e 577 (915)
.+.+.++..|..+|+.--..--.++ ..-.|++.-+.+.-.+++...+|.++...+.-. .+.....|++.+++
T Consensus 20 ekae~e~~~lk~~l~~~~~~~~~~e-----~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~---~~s~e~e~~~~~le 91 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAATQQKLALE-----DRVSHLDGALKECMRQLRQVREEQEQKIHEAVA---KKSKEWEKIKSELE 91 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-----HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH---HHhHHHHHHHHHHH
Confidence 4455666677766665322111111 333466777777777777777777666554332 12334557777788
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 002498 578 LKLKALEAQILELKKKQ-----------ESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA--EQFRQWKA 644 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~-----------~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~--~~~~~~~~ 644 (915)
.+|.++..++..+..+. .-..+|...|...+.++..|...|+...+.-..|.-.+.--. =..|..+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~ 171 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEER 171 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887765444332 234556666777777777777777776666555543333111 11222222
Q ss_pred HHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002498 645 SREKEL-LKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 645 ~~~kE~-~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le 697 (915)
.+.+.- -.-.|+.-+.-..|.+|+++=++.....+||.=.-+ ++...|...+
T Consensus 172 ~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpa-a~a~mk~ev~ 224 (769)
T PF05911_consen 172 EYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPA-ALAQMKNEVE 224 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH-HHHHhHHHHH
Confidence 222221 122223334445577888777777777777776532 3444444444
No 149
>PRK05642 DNA replication initiation factor; Validated
Probab=90.09 E-value=0.14 Score=54.35 Aligned_cols=45 Identities=22% Similarity=0.540 Sum_probs=28.6
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhc---CC-CceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~---G~-n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.-+. . . +. .+...+..... ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~-~-~-~~-----~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYP-G-A-NA-----AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCc-C-C-hH-----HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 4689999883 2 2 22 23333433332 22 246788999999999998
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.05 E-value=56 Score=40.23 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=41.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002498 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 600 l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle 668 (915)
+......+..++..++.++.........+...++.+...+...+...++++..++.+-.+....+.++-
T Consensus 221 l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 221 QSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344455556666666666666666676666666666556566666666666666665555555444
No 151
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.85 E-value=50 Score=39.35 Aligned_cols=136 Identities=23% Similarity=0.241 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002498 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL---KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (915)
Q Consensus 610 ~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~L---kk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~ 686 (915)
++..|+.+|.+++....++..++..+...|+........-+..+ ..+.+....++..++.+...+..-+..|+.+-.
T Consensus 289 e~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke 368 (511)
T PF09787_consen 289 EIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKE 368 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33333333333333333344444444555544443333333333 344556677788888778888899999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 687 IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEV---SANVHEVRFKYEKQSQVQAALADELTIL 763 (915)
Q Consensus 687 a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~---~~~l~e~~~~~~~~~e~r~~l~~el~~L 763 (915)
..+..|+..+-+.. . ...|-+-|-.. ...+..-...++.+--+|..+.=+|.++
T Consensus 369 ~E~q~lr~~l~~~~----~-------------------~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl 425 (511)
T PF09787_consen 369 SEIQKLRNQLSARA----S-------------------SSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERL 425 (511)
T ss_pred HHHHHHHHHHHHHh----c-------------------cCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHH
Confidence 99999998887422 0 01232222212 1145555777888888888888888877
Q ss_pred Hhhhh
Q 002498 764 KQVDQ 768 (915)
Q Consensus 764 ~~~~e 768 (915)
...+-
T Consensus 426 ~~~l~ 430 (511)
T PF09787_consen 426 ETQLK 430 (511)
T ss_pred HHHHH
Confidence 76554
No 152
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.60 E-value=0.11 Score=60.43 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=31.1
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||..+. +.+ +...|.. +..++.+ -..||. +|-||++|+||||.+
T Consensus 100 ~~~tFdnFv~-g~~-n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 100 PDYTFENFVV-GPG-NSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCccccccc-CCc-hHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 5799998774 223 4444443 2333332 123675 889999999999998
No 153
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.44 E-value=28 Score=35.94 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002498 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (915)
Q Consensus 606 k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~ 685 (915)
+.-.-+..++..=+.++....+.+..++.+-.+|..++.-.+..+. ....+|..+...+......|+-.++-.
T Consensus 101 k~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~ 173 (207)
T PF05010_consen 101 KQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKE 173 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444555555556666666666677777777766665554333 233444444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 002498 686 AIATKRLKELLE 697 (915)
Q Consensus 686 ~a~~k~Lke~le 697 (915)
...+.-|.+.|+
T Consensus 174 e~~~~SLe~~Le 185 (207)
T PF05010_consen 174 EMKVQSLEESLE 185 (207)
T ss_pred HHHHHHHHHHHH
Confidence 444444544444
No 154
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=0.41 Score=54.16 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=20.7
Q ss_pred hhHHhhhcCCCc-eEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNA-TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~-ti~ayGqtgSGKT~Tm 98 (915)
.++..++.|.-. .++.||+||+|||.|+
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 345555555433 3999999999999988
No 155
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.37 E-value=57 Score=39.27 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 002498 723 KSLQKWLEHELEVSANVHEVR-------FKYEKQSQVQAALADELTILKQ 765 (915)
Q Consensus 723 ~~~~~~l~~Ele~~~~l~e~~-------~~~~~~~e~r~~l~~el~~L~~ 765 (915)
+++...+.+++-....+.++. .++.++...|+-+..+...|.+
T Consensus 363 ~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~ 412 (716)
T KOG4593|consen 363 ERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNR 412 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665544444433 3445555555555555555444
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.06 E-value=0.15 Score=57.86 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=29.9
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.... +.+ +...|. +...|.....+..-.||-||++|+||||.|
T Consensus 82 ~~ytFdnFv~-g~~-N~~A~a--a~~~va~~~g~~~nplfi~G~~GlGKTHLl 130 (408)
T COG0593 82 PKYTFDNFVV-GPS-NRLAYA--AAKAVAENPGGAYNPLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCchhheee-CCc-hHHHHH--HHHHHHhccCCcCCcEEEECCCCCCHHHHH
Confidence 5799998774 333 333322 222222222333445788999999999999
No 157
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.87 E-value=42 Score=37.13 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002498 617 EIQSIKAQKVQLQNKIKQEAEQFRQWKASREKE---LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (915)
Q Consensus 617 ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE---~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~L 692 (915)
.+..+..+-..|..++.-=+.+|........+= ....+++-.+....+.+|+. ....+++|.+....++-.+
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEK----E~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEK----ENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHH
Confidence 777777787888888887777777776554332 23334444444444444442 2334555555554444333
No 158
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.83 E-value=0.28 Score=51.46 Aligned_cols=43 Identities=35% Similarity=0.485 Sum_probs=32.1
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCcccccCC--CCCCCCccccH
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMGT--GLREGFQTGLI 111 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g--~~~~~~~~Gli 111 (915)
++|++.++.-.--+.|+..|+|||||++||.. ++.+...+|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 56788888878888899999999999999822 23344455543
No 159
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.62 E-value=21 Score=33.46 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002498 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~ 629 (915)
..+..|+.++.+|+..-...-+|...| .+++..|+.+|.+||......+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK---~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEK---SEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666766655544444444 4577888899999988765554
No 160
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.55 E-value=55 Score=38.07 Aligned_cols=152 Identities=16% Similarity=0.285 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CC
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTE--ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA----------NS 565 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~--~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee----------~~ 565 (915)
.++..++..|..++++-....-+.....+. ..+..+..+..+|+.+...+..|++.+...+..... +.
T Consensus 11 e~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~ 90 (772)
T KOG0999|consen 11 EKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEER 90 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 345566666666666544333222212222 344556666777777776666666666554333210 00
Q ss_pred cc----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 566 DG----HTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (915)
Q Consensus 566 ~~----~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~ 641 (915)
.+ ...--...|-.++-+|+.+ |++......+......+++.....+.+.-+...-+ -.+||.|.+.++-
T Consensus 91 EesLLqESaakE~~yl~kI~elene---LKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~q----R~rlr~elKe~Kf 163 (772)
T KOG0999|consen 91 EESLLQESAAKEEYYLQKILELENE---LKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQ----RRRLRDELKEYKF 163 (772)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH----HHHHHHHHHHHHH
Confidence 00 0001123466778888888 44443333333333333333333332222222222 2234455554444
Q ss_pred HHHHHHHHHHHHHHh
Q 002498 642 WKASREKELLKLKKE 656 (915)
Q Consensus 642 ~~~~~~kE~~~Lkk~ 656 (915)
.+++.-.|-..|..+
T Consensus 164 RE~RllseYSELEEE 178 (772)
T KOG0999|consen 164 REARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444444444333
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.44 E-value=66 Score=38.89 Aligned_cols=17 Identities=41% Similarity=0.731 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002498 502 KELNELNKRLEQKESEM 518 (915)
Q Consensus 502 ~el~eL~~~Le~kE~~~ 518 (915)
+++.+|..+|......+
T Consensus 328 ~el~~l~~~l~~l~~~i 344 (594)
T PF05667_consen 328 QELEELQEQLDELESQI 344 (594)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=88.31 E-value=0.25 Score=42.38 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.3
Q ss_pred HHhhhcCCCceEEeeccCCCCccccc
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
|...+. -+..++..|++|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 444455 3333445899999999998
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.13 E-value=76 Score=39.20 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002498 613 RLQAEIQSIKAQKVQLQNKI--KQEA-EQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIAT 689 (915)
Q Consensus 613 ~l~~ei~~lk~~k~~L~~~~--k~e~-~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~ 689 (915)
.|+.++.++.+.+.++.+.. -++. .++-.|+.+.++-...+-+--.+....+.|.. +-++|..+-+.-+.++...+
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~-di~kQle~~~~s~~~~~~~~ 468 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYD-DIQKQLESAEQSIDDVEEEN 468 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence 78888888888888887766 2333 44555555555554444444455556666666 66667666677777777777
Q ss_pred HHHHHHHHH
Q 002498 690 KRLKELLEA 698 (915)
Q Consensus 690 k~Lke~le~ 698 (915)
.+|-+.++.
T Consensus 469 ~~L~d~le~ 477 (980)
T KOG0980|consen 469 TNLNDQLEE 477 (980)
T ss_pred HHHHHHHHH
Confidence 777777764
No 164
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.96 E-value=69 Score=38.56 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 726 QKWLEHELEVSA----NVHEVRFKYEKQSQVQAALADELTILKQ 765 (915)
Q Consensus 726 ~~~l~~Ele~~~----~l~e~~~~~~~~~e~r~~l~~el~~L~~ 765 (915)
...+.+|++-.. +++.+.+.+..+..++..+-.++..=+.
T Consensus 277 v~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 277 VGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 556667776633 6788888888888888887777776443
No 165
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.96 E-value=49 Score=36.79 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 590 L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
+-+.+++..++.++-+.+...++.|-++-.++..+
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq 166 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQ 166 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554444444433333
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.94 E-value=36 Score=37.67 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 608 DEAAKRLQAEIQSIKAQKVQLQNKIK 633 (915)
Q Consensus 608 e~~~~~l~~ei~~lk~~k~~L~~~~k 633 (915)
+.++..+...|+....++.++..++.
T Consensus 231 ~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 231 EEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555544443
No 167
>PRK06526 transposase; Provisional
Probab=87.76 E-value=0.22 Score=53.41 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.5
Q ss_pred EEeeccCCCCcccccC
Q 002498 84 VLAYGQTGSGKTYTMG 99 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm~ 99 (915)
|+.||++|+||||.+.
T Consensus 101 lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 101 VVFLGPPGTGKTHLAI 116 (254)
T ss_pred EEEEeCCCCchHHHHH
Confidence 7889999999999983
No 168
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.75 E-value=8.5 Score=31.44 Aligned_cols=57 Identities=11% Similarity=0.088 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 851 MFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (915)
Q Consensus 851 l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l 907 (915)
|...+.+++...+.++.+|...+.....+.++++.++..+.+|..++...+..+..+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999999999999999999999999888887777654
No 169
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=76 Score=38.71 Aligned_cols=58 Identities=16% Similarity=0.089 Sum_probs=31.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 839 RFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQ 896 (915)
Q Consensus 839 ~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~ 896 (915)
+...++...+..|+-.+......+-+++.++.+....+..+.-..++++.++..|..-
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555554433
No 170
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.72 E-value=0.25 Score=52.41 Aligned_cols=46 Identities=15% Similarity=0.398 Sum_probs=29.3
Q ss_pred CeEEEeceeecCCCCCccccccccchhhHHhhh-cCCCceEEeeccCCCCccccc
Q 002498 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 45 ~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l-~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+..|+||..+. . . +...+. .+..+. ......++-||++|+||||.+
T Consensus 16 ~~~~~fd~f~~-~-~-n~~a~~-----~l~~~~~~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 16 PDDETFASFYP-G-D-NDSLLA-----ALQNALRQEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCcCCcccccc-C-c-cHHHHH-----HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 35688887773 2 3 344443 223332 222347899999999999999
No 171
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.66 E-value=0.21 Score=58.45 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=29.3
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 117 ~~~tfd~fv~-g~~-n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCccccccc-CCC-cHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 5789988542 222 3334432 3333333222345 4778999999999998
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.59 E-value=80 Score=38.85 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH-
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH- 576 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~- 576 (915)
..+...+.+|..+|......+.... .+...+.....+|.+.+..++.++..|..++..... ....+=.+|
T Consensus 30 ~~~~~~i~~l~~elk~~~~~~~~~~-----~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~----rE~rll~dys 100 (717)
T PF09730_consen 30 AYLQQRILELENELKQLRQELSNVQ-----AENERLSQLNQELRKECEDLELERKRLREEIKEYKF----REARLLQDYS 100 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhH
Confidence 4555666666666666555554444 555566667777777888888888888777766320 111111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 002498 577 --TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA---EQFRQWKASREKELL 651 (915)
Q Consensus 577 --e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~---~~~~~~~~~~~kE~~ 651 (915)
|.--=.|.++++.||.-|-+-.-+--..+++++++..|+..+++.-+-|.-..++|-+-. +.=|..+..+.||+.
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123344444555444443333333356666666666666666666666666665333 344555555666666
Q ss_pred HHHH
Q 002498 652 KLKK 655 (915)
Q Consensus 652 ~Lkk 655 (915)
+...
T Consensus 181 ~~~~ 184 (717)
T PF09730_consen 181 QHLN 184 (717)
T ss_pred HhcC
Confidence 5333
No 173
>PRK12377 putative replication protein; Provisional
Probab=87.50 E-value=0.23 Score=53.07 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=32.0
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+||........ +..++. .+..++..+..|. ..|+-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~~-~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQNDG-QRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCChh-HHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 3478876533222 333443 3556677766654 46778999999999998
No 174
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.42 E-value=45 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002498 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (915)
Q Consensus 582 ~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L 628 (915)
+|=.++++||-+... ++|.+...|.+++..++.|+++.+.||..
T Consensus 178 DLmaevSeLKLklta---lEkeq~e~E~K~R~se~l~qevn~~kv~e 221 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTA---LEKEQNETEKKLRLSENLMQEVNQSKVGE 221 (861)
T ss_pred HHHHHHHHhHHHHHH---HHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 333444444433322 55555566666666666666665555554
No 175
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.35 E-value=81 Score=38.63 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 496 WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIE 559 (915)
Q Consensus 496 ~q~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~ 559 (915)
.+-++...+.++..+++........+. .+...++.++.....++..+.+..+-|..++.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~-----~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQ-----VENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666677777777766655554444 55566666666666666677766666666655
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.26 E-value=38 Score=34.74 Aligned_cols=81 Identities=25% Similarity=0.380 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l 614 (915)
.+|..|..++..++...+.+..+...+ +.+.-..+.- |.+-....++|-..-.....+++.|
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~L--------k~lq~Rq~kA----------L~k~e~~e~~Lpqll~~h~eEvr~L 73 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTL--------KQLQKRQEKA----------LQKYEDTEAELPQLLQRHNEEVRVL 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 456666666666666666655543332 1111111111 2222333444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002498 615 QAEIQSIKAQKVQLQNKIK 633 (915)
Q Consensus 615 ~~ei~~lk~~k~~L~~~~k 633 (915)
+..+-..+.+-..+.++++
T Consensus 74 r~~LR~~q~~~r~~~~klk 92 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLK 92 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444
No 177
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.19 E-value=0.33 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=24.9
Q ss_pred ccccchhhHHhhhcCC---CceEEeeccCCCCccccc
Q 002498 65 FGECVAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 65 y~~~~~~lv~~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (915)
+.....+.+..++... .+.|+..|+||||||++|
T Consensus 108 ~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 108 ESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred CchhhHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 3334445566666555 777888899999999999
No 178
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.12 E-value=21 Score=33.48 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 375 DLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRR 435 (915)
Q Consensus 375 d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~e~~~~~ 435 (915)
.+....+..|...|..+..++ ..++.++..|..+.+.+..++-.....+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~------------~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGEL------------ASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444433 2344555555555555555554444433
No 179
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.05 E-value=0.22 Score=57.40 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=28.7
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.... +.. +...|.. +..+...--..|| .++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~~-n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CCc-HHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 5789998442 222 3334422 3333333111244 4778999999999998
No 180
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.03 E-value=0.44 Score=53.66 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=25.8
Q ss_pred cccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 64 vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+.+-...|.+..++.--.+.|+..|+||||||+||
T Consensus 105 l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 105 FEELGLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 33333446666666555678999999999999999
No 181
>PRK08727 hypothetical protein; Validated
Probab=87.00 E-value=0.28 Score=52.04 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=26.8
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCC-ceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n-~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.-+.. .+ + . +. .+..+..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~-~~-n-~-~~-----~~~~~~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAA-PD-G-L-LA-----QLQALAAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCC-cH-H-H-HH-----HHHHHHhccCCCeEEEECCCCCCHHHHH
Confidence 46789887642 22 2 1 11 1122222332 35899999999999998
No 182
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.89 E-value=0.23 Score=57.97 Aligned_cols=48 Identities=29% Similarity=0.448 Sum_probs=29.9
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|+||..+. +.+ +...| ..+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~-g~~-n~~A~-~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVI-GSS-NEQAF-IAVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccC-CCc-HHHHH-HHHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 599999774 333 44444 233344332111245 4788999999999998
No 183
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.43 E-value=59 Score=36.17 Aligned_cols=14 Identities=50% Similarity=0.669 Sum_probs=8.5
Q ss_pred chHHHHHHHHHhhh
Q 002498 293 GLLALGNVISALGD 306 (915)
Q Consensus 293 sL~~L~~vi~~L~~ 306 (915)
+.+.||.||..+++
T Consensus 8 ~vlvLgGVIA~~gD 21 (499)
T COG4372 8 FVLVLGGVIAYAGD 21 (499)
T ss_pred HHHHHHhHHHHHhh
Confidence 34566666666665
No 184
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.11 E-value=32 Score=32.84 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (915)
Q Consensus 590 L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~ 632 (915)
+.++...|+...+.-..+..++..++.+|..++.........+
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555554444333
No 185
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.02 E-value=0.35 Score=50.75 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=29.5
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.... + . +..++.. +..+ +..+....|+-||++|+||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 3578887773 2 2 2333332 1222 23566778999999999999998
No 186
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.95 E-value=44 Score=34.25 Aligned_cols=73 Identities=27% Similarity=0.355 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002498 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIAT 689 (915)
Q Consensus 610 ~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~ 689 (915)
+++.|+++|.++.....++ .+|...|+.-..+....+.+.+.....--.++.+-.+|+-...
T Consensus 13 ki~~L~n~l~elq~~l~~l------------------~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr 74 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQEL------------------RKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 4556666666665554444 4667778888888888888888777777888888888988888
Q ss_pred HHHHHHHHHhh
Q 002498 690 KRLKELLEARK 700 (915)
Q Consensus 690 k~Lke~le~ek 700 (915)
.+|+.--+..+
T Consensus 75 ~~LR~~q~~~r 85 (194)
T PF15619_consen 75 ERLRKSQEQER 85 (194)
T ss_pred HHHHHHHHHHH
Confidence 88876655443
No 187
>PRK08116 hypothetical protein; Validated
Probab=85.94 E-value=0.25 Score=53.49 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=33.1
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhc--CCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~--G~n~ti~ayGqtgSGKT~Tm 98 (915)
..++||.... + ..+...| ..+...++++.. +.|..++-||++|+||||.+
T Consensus 80 ~~~tFdnf~~-~-~~~~~a~-~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-D-KGSEKAY-KIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-C-hHHHHHH-HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 3578887553 2 2233344 335666666643 34556899999999999998
No 188
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=85.84 E-value=0.33 Score=48.60 Aligned_cols=30 Identities=33% Similarity=0.411 Sum_probs=21.2
Q ss_pred chhhHHhhhcC-CCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm 98 (915)
+..+++.+-.+ .+..++..|+||||||++|
T Consensus 12 i~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 12 IARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 34444544444 4566677899999999999
No 189
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.74 E-value=0.41 Score=45.44 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=19.5
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+...+.......|+.+|++|+|||+++
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3334443434556888999999999876
No 190
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=85.60 E-value=0.31 Score=59.41 Aligned_cols=92 Identities=25% Similarity=0.424 Sum_probs=54.2
Q ss_pred EEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCcccccCCCCCCCCccccHH----HHHHHHHHHHH
Q 002498 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNKIE 123 (915)
Q Consensus 48 f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glip----r~~~~lF~~i~ 123 (915)
|....=|.|.+. |..- +..++..+-.|.... +.+|.|||||||||..-......+-||- .....|+..+.
T Consensus 2 f~~~~~~~~~~~-Q~~a----i~~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKA----IAKLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHH----HHHHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444455767665 4333 334666666664333 3689999999999943211111122221 24456666666
Q ss_pred hccccceeEEEEeheehhhhhh
Q 002498 124 TLRHQMEFQLHVSFIEILKEEV 145 (915)
Q Consensus 124 ~~~~~~~~~v~vS~~EIy~e~v 145 (915)
..-++..+...||||..|.-+.
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred HhCCCCeEEEEeeecccCCccc
Confidence 5544555788899999887654
No 191
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=81 Score=36.80 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGD---------------IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~---------------~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~e 562 (915)
.+++.+|..++--|+.+.+.+-++.. ..+.....+++..++.++++....+.+-+.++.-+...+
T Consensus 376 lk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeve 455 (654)
T KOG4809|consen 376 LKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVE 455 (654)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666676666666666655442 122334444555555555555555555555555444444
Q ss_pred cCCcchhhh
Q 002498 563 ANSDGHTQK 571 (915)
Q Consensus 563 e~~~~~~~K 571 (915)
-.+++.-.|
T Consensus 456 neKnDkdkk 464 (654)
T KOG4809|consen 456 NEKNDKDKK 464 (654)
T ss_pred hhhccccch
Confidence 334433333
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=85.18 E-value=81 Score=39.65 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-ch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 499 TMDKELNELNKRLEQKESEMKLFGDI-DT-E-ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENL 561 (915)
Q Consensus 499 ~l~~el~eL~~~Le~kE~~~~kl~~~-~~-~-~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ 561 (915)
=++.++.++..+++..|..+..+... .. . ....-.++++..|+.++...+.++......+..+
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777666431 11 0 0111123677777777777776666655554443
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.18 E-value=19 Score=40.74 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=21.1
Q ss_pred EEcCCHHHHHHHHHhcccccccccCCCCC-CCCCcEEEEEEEEEee
Q 002498 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (915)
Q Consensus 193 ~~v~s~~e~~~~l~~g~~~R~~~~t~~n~-~SSRSH~if~i~v~~~ 237 (915)
+...+-.++..++..=+ ...+|. .+---|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence 55667777777665421 111221 1224588888777654
No 194
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.15 E-value=60 Score=35.09 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002498 797 RIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQL 876 (915)
Q Consensus 797 qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~ 876 (915)
.++.|.+....+..++...+.+.+.++.+.. ....+|.+---.+..+.+.+....|++.+++......+.++
T Consensus 138 d~S~lkd~ne~LsQqLskaesK~nsLe~elh--------~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv 209 (305)
T PF14915_consen 138 DVSNLKDNNEILSQQLSKAESKFNSLEIELH--------HTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKV 209 (305)
T ss_pred hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455555555566666666666666666653 45556666666788888888887788777766555555544
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 877 ND-------LVALLKQSEAQRKELVKQQRMREQAVTIALASS 911 (915)
Q Consensus 877 ~~-------l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~~ 911 (915)
.. +..++.+++.++.-|..|+++.........+.+
T Consensus 210 ~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~V 251 (305)
T PF14915_consen 210 NKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 445566677777777777777766665554433
No 195
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.13 E-value=1.3e+02 Score=38.81 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=13.4
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
+..+-+|+||||||..|
T Consensus 26 gi~lI~G~nGsGKSSIl 42 (908)
T COG0419 26 GIFLIVGPNGAGKSSIL 42 (908)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34456799999999776
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.02 E-value=0.34 Score=51.57 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=29.8
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..++||..... ...+..++.. +...++.+..|+ ..++.||++|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHH
Confidence 45678765422 2223334332 334444444443 36788999999999998
No 197
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.01 E-value=48 Score=35.39 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (915)
Q Consensus 574 ~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~L 653 (915)
.+|+.+|.+++.+ .++.+....+....-..++.+.+.++.+-..|...... +.++..+++........|-.+|
T Consensus 8 ~Ele~rL~q~eee---~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~e----aee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 8 QELEERLRQMEEE---MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQE----AEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555 44444444344444444455555544444444333222 2344444444444445555555
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 002498 654 KKEGRKNEFERHKLEALNQ 672 (915)
Q Consensus 654 kk~~rk~~~~~~kle~~~~ 672 (915)
..+-+..+..+.+|.....
T Consensus 81 e~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555666666666654333
No 198
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.89 E-value=0.47 Score=49.94 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=29.9
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|+||.+++. . +..++ ..+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~-~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELV-ARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHH-HHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 56899998832 2 22332 223333331 234557899999999999988
No 199
>PRK10436 hypothetical protein; Provisional
Probab=84.84 E-value=0.43 Score=55.63 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.8
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++..-++.|+..|+||||||+||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 355566677899999999999999999
No 200
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.74 E-value=1.1e+02 Score=37.73 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHH------------
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQ-----ESQ------------ 597 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~-----~~~------------ 597 (915)
..|.+|+++...++.|+..|...+......-......+ .+...++..|-..+.-|++-+ ...
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~al-s~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGAL-SEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 35677888888888888777777665432111111111 122344556666665555411 100
Q ss_pred -----------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002498 598 -----------VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHK 666 (915)
Q Consensus 598 -----------~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~k 666 (915)
.-|+-.-.....++..|+.+|..++.....+..+.+++..+++..-+.....+..+.+..+..+..+..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 111222245556778888888888888888888888888888888888888999998877777778888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002498 667 LEALNQRQKMVLQRKTEEAAIATKRL 692 (915)
Q Consensus 667 le~~~~~q~~~l~rk~eE~~a~~k~L 692 (915)
|+.+-..-..+.-.....+.++..+|
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDEL 449 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDEL 449 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 88665544444433333333333333
No 201
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.41 E-value=0.47 Score=54.47 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=19.8
Q ss_pred hHHhhhc-CCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~-G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++. +....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3334443 44566889999999999988
No 202
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.38 E-value=38 Score=41.98 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002498 670 LNQRQKMVLQRKTEEAAIATKRLKEL 695 (915)
Q Consensus 670 ~~~~q~~~l~rk~eE~~a~~k~Lke~ 695 (915)
++..-..+|+...++...++++++..
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444678888888877777777754
No 203
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.24 E-value=0.5 Score=55.60 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=22.8
Q ss_pred hHHhhhcCCCceEEeeccCCCCcccccC
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (915)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3455666777889999999999999993
No 204
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.22 E-value=0.42 Score=49.24 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.1
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
++.|+..|+||||||+++
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999998
No 205
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=84.19 E-value=0.53 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHhhhcCCCceEEeeccCCCCccccc
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+..++..-++.|+..|+||||||+||
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 33444445789999999999999999
No 206
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=84.16 E-value=56 Score=33.88 Aligned_cols=80 Identities=19% Similarity=0.415 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 002498 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK-----QESQVELLK 602 (915)
Q Consensus 528 ~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~-----~~~~~~l~k 602 (915)
.+-..|..++..|+.+...-+.+...+..++..+. ...+++...+..|..|+.++...+.+ ..-+.+...
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457889999999999999999999999988874 56788899999999999996644422 222455556
Q ss_pred HHhhhHHHHH
Q 002498 603 QKHKSDEAAK 612 (915)
Q Consensus 603 ~k~k~e~~~~ 612 (915)
.|..++.++.
T Consensus 115 EK~~LEke~~ 124 (206)
T PF14988_consen 115 EKARLEKEAS 124 (206)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 207
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.00 E-value=0.47 Score=57.08 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.2
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455666777899999999999999999
No 208
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=83.91 E-value=0.37 Score=50.70 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=20.5
Q ss_pred HHhhhcCCCc-eEEeeccCCCCccccc
Q 002498 73 VDGLFQGYNA-TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 73 v~~~l~G~n~-ti~ayGqtgSGKT~Tm 98 (915)
...++.|..+ -|+.||..|+|||.++
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 3667788755 3677999999998887
No 209
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.82 E-value=0.57 Score=53.07 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=20.7
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+++..++. .++.|+..|+||||||+||
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444443 5677889999999999999
No 210
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=83.58 E-value=1.7 Score=46.10 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=32.3
Q ss_pred EcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCcceEEeeeeeeecCCCcc
Q 002498 194 AVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSER 273 (915)
Q Consensus 194 ~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr 273 (915)
.+.+++++..++..... +..++ ...-|.-++.|.|.... +-.|+||||+|-.+
T Consensus 85 ~~~~~~~v~~~i~~~~~-~~~~~-----~~~~s~~~i~l~i~~p~---------------------~~~ltLIDlPGl~~ 137 (240)
T smart00053 85 KFTDFDEVRNEIEAETD-RVTGT-----NKGISPVPINLRVYSPH---------------------VLNLTLIDLPGITK 137 (240)
T ss_pred ccCCHHHHHHHHHHHHH-HhcCC-----CCcccCcceEEEEeCCC---------------------CCceEEEeCCCccc
Confidence 34678888888775432 12111 12345667777776321 23499999999964
Q ss_pred c
Q 002498 274 A 274 (915)
Q Consensus 274 ~ 274 (915)
.
T Consensus 138 ~ 138 (240)
T smart00053 138 V 138 (240)
T ss_pred c
Confidence 3
No 211
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=83.43 E-value=1.1e+02 Score=36.78 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHH
Q 002498 723 KSLQKWLEHELEVSA-NVHEVRFKYEKQSQVQAALADEL 760 (915)
Q Consensus 723 ~~~~~~l~~Ele~~~-~l~e~~~~~~~~~e~r~~l~~el 760 (915)
+.....|..|++-.. .-+++.+.|..-++.....+++|
T Consensus 635 eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L 673 (786)
T PF05483_consen 635 EIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEEL 673 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Confidence 344666777776655 35666666666666666555544
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.27 E-value=0.62 Score=51.90 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=22.0
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+...|+++-.+. ..|+-||+||+||||.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 344666665544 56889999999999988
No 213
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.24 E-value=60 Score=33.53 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002498 671 NQRQKMVLQRKTEEAAIATKRLKELL 696 (915)
Q Consensus 671 ~~~q~~~l~rk~eE~~a~~k~Lke~l 696 (915)
-.-...+|.||+..+...+..-..+|
T Consensus 141 ~~~kn~lLEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777665554444333
No 214
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.93 E-value=80 Score=34.74 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (915)
Q Consensus 577 e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~ 632 (915)
.-.|.++|.. +++.--.-+.|.-.|..+-=+|..|++.|.+|.....++.+..
T Consensus 83 k~~l~evEek---yrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 83 KDSLAEVEEK---YRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHH---HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777 8888888888888898888899999999999888877775333
No 215
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.90 E-value=0.48 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.4
Q ss_pred hHHhhhc-CCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~-G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++. +....++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444 45568999999999999987
No 216
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.72 E-value=0.45 Score=44.99 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.2
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999988
No 217
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.65 E-value=0.53 Score=44.22 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 567999999999999
No 218
>PF14992 TMCO5: TMCO5 family
Probab=82.51 E-value=25 Score=37.75 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002498 534 GKKIMELEEEKRIVQQERDRLLAEIEN---LAANSDGHTQKMQDGHTLKLKALEAQILELKKK 593 (915)
Q Consensus 534 ~~ki~~Le~ei~~le~e~~~l~~~l~~---~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~ 593 (915)
+.++..+......++.+..++..+... +.++...-..|+++.+ .++.+ +.++.-|.++
T Consensus 115 k~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L-~rmE~-ekE~~lLe~e 175 (280)
T PF14992_consen 115 KNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL-RRMEE-EKEMLLLEKE 175 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHH
Confidence 356677777777777777777654443 3333344455666655 44444 4444444433
No 219
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.18 E-value=1.2e+02 Score=36.42 Aligned_cols=43 Identities=30% Similarity=0.365 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002498 578 LKLKALEAQIL----ELKKKQESQVELLKQKHKSDEAAKRLQAEIQS 620 (915)
Q Consensus 578 ~~l~~le~~l~----~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~ 620 (915)
+++..+++++. +|.++-.+..++.+.+..-+.++..|+..+.+
T Consensus 370 qr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e 416 (786)
T PF05483_consen 370 QRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAE 416 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555666655 45566666677777777777777777777766
No 220
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=82.04 E-value=0.48 Score=52.15 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.0
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555554 456788899999999998
No 221
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.88 E-value=0.74 Score=47.38 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|..++.+.+..++..|+.||||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3566676665555666899999999998
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.85 E-value=1.1e+02 Score=35.54 Aligned_cols=86 Identities=29% Similarity=0.315 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHH
Q 002498 648 KELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQK 727 (915)
Q Consensus 648 kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (915)
+|+.++-++--+...++.+|.+ +-.-+++|+....-...++.+.|.+-+.+ .+
T Consensus 219 eel~~kt~el~~q~Ee~skLls----ql~d~qkk~k~~~~Ekeel~~~Lq~~~da-----------------------~~ 271 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLS----QLVDLQKKIKYLRHEKEELDEHLQAYKDA-----------------------QR 271 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHhh-----------------------HH
Confidence 3344444444444555555552 33456677777777777777776642211 11
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 728 WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 728 ~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
- ...++.|+++.+...+..=+.-+.||..|+.+
T Consensus 272 q------l~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 272 Q------LTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1 13345666677777777777777777776653
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=81.73 E-value=0.61 Score=43.75 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.1
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45788999999999998
No 224
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=81.62 E-value=1.8e+02 Score=37.95 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 725 ~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
++..++........+......++.+..++......+..+.+.
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~ 301 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQA 301 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556667777777777777766666666655543
No 225
>PRK08181 transposase; Validated
Probab=81.10 E-value=0.62 Score=50.39 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.2
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|.| |+-||++|+||||.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4555 788999999999998
No 226
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.98 E-value=92 Score=34.14 Aligned_cols=88 Identities=27% Similarity=0.345 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHH
Q 002498 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKS 724 (915)
Q Consensus 645 ~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~ 724 (915)
.+..|++.-...-.+.+.+|.+|- .|..-|+++.....+-+.+|...|..-|.
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~Ll----sqivdlQ~r~k~~~~EnEeL~q~L~~ske----------------------- 269 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLL----SQIVDLQQRCKQLAAENEELQQHLQASKE----------------------- 269 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----------------------
Confidence 345556666666667777777776 34566677777777777777777764331
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (915)
Q Consensus 725 ~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~ 765 (915)
....| ..++.++.+.|..-+..=+.-..|+..+++
T Consensus 270 ~Q~~L------~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 270 SQRQL------QAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 12222 233555666666555555555556655554
No 227
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=80.86 E-value=1.4e+02 Score=36.18 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=22.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE 635 (915)
Q Consensus 602 k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e 635 (915)
....++-.++..|+.++........-|+..|.+-
T Consensus 331 ~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK 364 (739)
T PF07111_consen 331 DSVKQLRGQVASLQEEVASQQQEQAILQHSLQDK 364 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344566677777777777777777777666533
No 228
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.71 E-value=60 Score=34.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRL 614 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l 614 (915)
.-|.++.+++..|..|+..+..+|..+. +-+..||.-|..++.+.. +....-.++.+++..|
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~---------------~DIn~lE~iIkqa~~er~---~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQIN---------------QDINTLENIIKQAESERN---KRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4466777777777777777776666543 234456666443433322 2333334444566666
Q ss_pred HHHHHHHHHH
Q 002498 615 QAEIQSIKAQ 624 (915)
Q Consensus 615 ~~ei~~lk~~ 624 (915)
.++|.++...
T Consensus 94 k~~in~~R~e 103 (230)
T PF10146_consen 94 KDEINELRKE 103 (230)
T ss_pred HHHHHHHHHH
Confidence 6666665444
No 229
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=80.28 E-value=0.91 Score=49.07 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.3
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++..-.+.|+..|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345556555677888899999999999
No 230
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=80.22 E-value=17 Score=37.30 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhHHHHHH
Q 002498 796 ERIASLENMLNMSSKALVEMASQLSEAEERE 826 (915)
Q Consensus 796 ~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 826 (915)
..+..|+.++..+.+....++..+..+..++
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4566666666666666666666555555544
No 231
>PF13514 AAA_27: AAA domain
Probab=80.22 E-value=2.1e+02 Score=37.80 Aligned_cols=161 Identities=21% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccchhhHhh
Q 002498 381 MQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKR 460 (915)
Q Consensus 381 i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~e~~~~~~~l~e~~~~~q~~~~~~~k~~eLe~ 460 (915)
|..+-.++..++.++..... .......+...+..+..+...+..++.........++....-. .+...+..++.
T Consensus 152 in~~l~~l~e~~~~l~~~~~--~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~----p~~~~~~~l~~ 225 (1111)
T PF13514_consen 152 INQALKELKELERELREAEV--RAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW----PLLAELQQLEA 225 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHH
Confidence 33344445555555542211 3455667777777777777777777777776665554322211 12445566666
Q ss_pred hhcccCCccchhhhcccCCCChhHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------chHH
Q 002498 461 GFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHAL-WQNTMDKELNELNKRLEQKESEMKLFGDI-----------DTEA 528 (915)
Q Consensus 461 ~l~~~~~~d~~l~e~~~~~~~~~le~ee~~~~~~~-~q~~l~~el~eL~~~Le~kE~~~~kl~~~-----------~~~~ 528 (915)
.+..+... .++.... ..+..... ....++.++..+..++......+..+.-. .+..
T Consensus 226 ~l~~l~~~---------~~~p~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~ 293 (1111)
T PF13514_consen 226 ELAELGEV---------PDFPEDG---AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEE 293 (1111)
T ss_pred HHHhcCCc---------CCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHH
Confidence 66322100 1111111 11222222 22334445555555555555444443311 0111
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 529 LRHH---FGKKIMELEEEKRIVQQERDRLLAEIE 559 (915)
Q Consensus 529 ~~~~---~~~ki~~Le~ei~~le~e~~~l~~~l~ 559 (915)
.... ....+..++.++..+..+...+...+.
T Consensus 294 ~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 294 QRGEYRKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1222 224456666667777777777766665
No 232
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.01 E-value=0.87 Score=44.99 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=19.8
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 4555666766 778899999999998
No 233
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=79.76 E-value=1.9e+02 Score=37.16 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 002498 726 QKWLEHELEV 735 (915)
Q Consensus 726 ~~~l~~Ele~ 735 (915)
..|+.+.++.
T Consensus 528 ~~~~~~~~e~ 537 (908)
T COG0419 528 KEELEEKLEK 537 (908)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 234
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.61 E-value=53 Score=33.37 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 002498 576 HTLKLKALEAQ 586 (915)
Q Consensus 576 ~e~~l~~le~~ 586 (915)
+..+++.++..
T Consensus 128 ~~~~l~~l~~~ 138 (191)
T PF04156_consen 128 VEERLDSLDES 138 (191)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 235
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.43 E-value=1.2e+02 Score=35.92 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 407 VQVLKGRIAWLEATNEDLCQELHEYRSRR 435 (915)
Q Consensus 407 ~~~l~~~i~~L~~e~~~L~~eL~e~~~~~ 435 (915)
...+.++.+.|+-.++.|..++.-..++.
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqV 134 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQV 134 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHH
Confidence 44455666666655555555555444443
No 236
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.39 E-value=1.3e+02 Score=34.97 Aligned_cols=92 Identities=10% Similarity=0.124 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---Ccchhhhh
Q 002498 500 MDKELNELNKRLEQKESEMKLFGDI-D---TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~~-~---~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~---~~~~~~Kl 572 (915)
++.++.++..+|+..|..+..+... + +.........++..|..++...+.++......+...... ..-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 4566667777777777666665431 1 111111123567777777777776666555544331100 00001112
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002498 573 QDGHTLKLKALEAQILELK 591 (915)
Q Consensus 573 k~~~e~~l~~le~~l~~L~ 591 (915)
-..+..++.+++.++..|.
T Consensus 256 i~~l~~~l~~le~~l~~l~ 274 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELS 274 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2334455666666655553
No 237
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.32 E-value=0.81 Score=48.16 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999999
No 238
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.06 E-value=0.65 Score=51.26 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEeceeecCCCCCccccccccchhhHHhhhcC-CCceEEeeccCCCCcccccC
Q 002498 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 48 f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm~ 99 (915)
.+||.+-... .....++.. +...+.....| ....|+-||++|+||||.+.
T Consensus 124 atf~~~~~~~-~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDD-RDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCC-hHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 4565544222 123344442 34455554433 23468899999999999993
No 239
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.52 E-value=0.9 Score=52.91 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=30.4
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhh--hcC--CCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~--l~G--~n~ti~ayGqtgSGKT~Tm 98 (915)
..||||.-+. +.+ +...| ..+..+.... ..| ||. +|-||++|+||||.+
T Consensus 106 ~~~tFdnFv~-g~~-N~~a~-~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 106 PLMTFANFLV-TPE-NDLPH-RILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred ccccccceee-CCc-HHHHH-HHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 5799998774 223 33333 3344443322 223 454 677999999999998
No 240
>PRK06921 hypothetical protein; Provisional
Probab=78.35 E-value=0.72 Score=49.88 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=15.8
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+-||++|+||||.+
T Consensus 117 ~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL 134 (266)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456788999999999998
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.21 E-value=0.83 Score=47.01 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+-.|+||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999999
No 242
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=78.15 E-value=1.4 Score=52.80 Aligned_cols=18 Identities=50% Similarity=0.752 Sum_probs=15.6
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556788999999999987
No 243
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.83 E-value=60 Score=33.01 Aligned_cols=97 Identities=14% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002498 796 ERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQ 875 (915)
Q Consensus 796 ~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~ 875 (915)
.++..+..+++..+..+.++............ .....+...+..++.+-...........+....+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQ--------ELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544444433322 1112222333333333333333333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 876 LNDLVALLKQSEAQRKELVKQQRMR 900 (915)
Q Consensus 876 ~~~l~~~~~~~e~e~~~l~~~~~~~ 900 (915)
...+...+.++......+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQLEEKIQEL 184 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 244
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=77.81 E-value=1.1 Score=48.39 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=25.1
Q ss_pred cccccccchhhHHhhhcCCC-ceEEeeccCCCCccccc
Q 002498 62 SAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 62 ~~vy~~~~~~lv~~~l~G~n-~ti~ayGqtgSGKT~Tm 98 (915)
+.+++..+..++.+.+.|.+ --.+-|||.|+|||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 34455555556665555533 34677999999999997
No 245
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.79 E-value=84 Score=31.86 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002498 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ 615 (915)
Q Consensus 536 ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~ 615 (915)
.|..|+.-.+.|..+..+|...+..+++ ...+|.++ +.+|..++..++ +.-...+.+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee----~na~L~~e----~~~L~~q~~s~Q--------------qal~~aK~l~ 66 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEE----GNAQLAEE----ITDLRKQLKSLQ--------------QALQKAKALE 66 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 3555555666666666666666655432 22233222 233444422222 2222334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002498 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (915)
Q Consensus 616 ~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~ 695 (915)
+|+.+||.-- +.+-++....-..-...++|...|-.+-..++.+..++..+. --+++++.++......|+-+
T Consensus 67 eEledLk~~~----~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~----~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 67 EELEDLKTLA----KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER----DGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----hhHHHHHHHHHHhhHHHHHH
Confidence 5555555442 222344444444455555555555555555555555555332 35667777776666666665
Q ss_pred H
Q 002498 696 L 696 (915)
Q Consensus 696 l 696 (915)
+
T Consensus 139 l 139 (193)
T PF14662_consen 139 L 139 (193)
T ss_pred H
Confidence 5
No 246
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.77 E-value=45 Score=35.38 Aligned_cols=106 Identities=26% Similarity=0.283 Sum_probs=70.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHH
Q 002498 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWL 729 (915)
Q Consensus 650 ~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 729 (915)
+..|+|+....+..|-.|++.-++|+...--..-|..+.-++..-.+|.-- .-++.+.||
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~--------------------~lek~rqKl 86 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCE--------------------NLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH--------------------HHHHHHHHh
Confidence 566677777778888888877777765544444455555555554444211 115668899
Q ss_pred HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Q 002498 730 EHELEVSA-NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHS 775 (915)
Q Consensus 730 ~~Ele~~~-~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~ 775 (915)
.++|-+.. .+.=+++.+..-...=.+|+.++..++..+|-......
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998755 56666777777777777788888888777776665444
No 247
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.41 E-value=43 Score=37.15 Aligned_cols=24 Identities=50% Similarity=0.675 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 537 IMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 537 i~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
+..++.++..++.+...+..++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~ 68 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEE 68 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555454444444
No 248
>PF12846 AAA_10: AAA-like domain
Probab=77.33 E-value=0.97 Score=49.33 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.8
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556788999999999998
No 249
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.06 E-value=1.3 Score=44.91 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=18.5
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+..+...-+-.-.-.|+-||++|+||||..
T Consensus 35 ~~~l~~~~~~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 35 IAQLAALEFIENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp HHHHHHH-S-SC--EEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCcccCeEEEEEhhHhHHHHHHH
Confidence 334433333233345888999999999998
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=77.04 E-value=0.93 Score=42.63 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+-||++|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999987
No 251
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=76.96 E-value=43 Score=36.06 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc---c--CCcchhhhhhhH
Q 002498 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLL--AEIENLA---A--NSDGHTQKMQDG 575 (915)
Q Consensus 503 el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~--~~l~~~e---e--~~~~~~~Klk~~ 575 (915)
++..|..-+.++|+.+ +.......--..|..++.+|.++++.|+.|..... .+--..- + +.++..-.++.=
T Consensus 36 EVEKLsqTi~ELEEai--LagGaaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqW 113 (351)
T PF07058_consen 36 EVEKLSQTIRELEEAI--LAGGAAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQW 113 (351)
T ss_pred HHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHH
Confidence 4556666666666665 22222334556899999999999999999865543 3211110 1 123455566655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHH
Q 002498 576 HTLKLKALEAQILELKKKQESQVELLK----QKHKSDEAAKRLQAEIQS 620 (915)
Q Consensus 576 ~e~~l~~le~~l~~L~~~~~~~~~l~k----~k~k~e~~~~~l~~ei~~ 620 (915)
+|.+ .=|+.++..|+-+...-.+.-+ +|.|+.-.++.|.+.+..
T Consensus 114 LEER-R~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 114 LEER-RFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5333 2255555556654444333322 366777777777777654
No 252
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=76.88 E-value=1 Score=41.95 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+..|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 253
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=76.80 E-value=0.89 Score=50.46 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=19.6
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.++..++.+. ..|+..|+||||||++|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4455555432 35778899999999999
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=76.59 E-value=1 Score=48.39 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=21.9
Q ss_pred cccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 62 SAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 62 ~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
...|.. +..++..+-.|.| ++-||++|+||||..
T Consensus 89 ~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa 122 (254)
T COG1484 89 KKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHH
Confidence 344433 4455555553434 456999999999998
No 255
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=76.45 E-value=1.3 Score=49.29 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.8
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.++..++.+ ...|+..|+||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455556555 456667799999999887
No 256
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.39 E-value=83 Score=33.60 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRL 554 (915)
Q Consensus 503 el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l 554 (915)
+..+|...|...+..+.+.. .....+..++..|+.+.+.++.+...|
T Consensus 6 ~k~Ele~rL~q~eee~~~a~-----~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQ-----EALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433 222333455555555555555444433
No 257
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.03 E-value=1.2e+02 Score=32.57 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 002498 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK---LKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (915)
Q Consensus 537 i~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~---l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~ 613 (915)
+.+|.+-...|.+.+..|...+.+++.....+..++-.+|..- ++-|+.. .-++.+....+|..++.+.+.++..
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~--~~~~l~~ak~eLqe~eek~e~~l~~ 85 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYS--NHKQLQQAKAELQEWEEKEESKLSK 85 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555556666666666666666544444444554444221 2222222 1123444456677777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 002498 614 LQAEIQSIKAQKVQLQ 629 (915)
Q Consensus 614 l~~ei~~lk~~k~~L~ 629 (915)
|+.++.++.+......
T Consensus 86 Lq~ql~~l~akI~k~~ 101 (258)
T PF15397_consen 86 LQQQLEQLDAKIQKTQ 101 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776644443
No 258
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.88 E-value=1.2 Score=46.51 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.3
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+...+..|.+.+|+.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444445677889999999999999987
No 259
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=75.87 E-value=95 Score=31.50 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002498 379 SDMQKLRQQLKYLQAELC 396 (915)
Q Consensus 379 ~~i~~L~~ei~~Lk~eL~ 396 (915)
..|..++..|..|+.++.
T Consensus 4 ~~va~lnrri~~leeele 21 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELD 21 (205)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456666666666666654
No 260
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=75.86 E-value=1.2 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.8
Q ss_pred HHhhhcCCCceEEeeccCCCCccccc
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
|..++..-. ..+..||+|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 444443333 4556899999999998
No 261
>PF13479 AAA_24: AAA domain
Probab=75.63 E-value=1.2 Score=46.37 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=16.1
Q ss_pred CceEEeeccCCCCcccccC
Q 002498 81 NATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~ 99 (915)
+..|+.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999873
No 262
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.52 E-value=98 Score=32.65 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002498 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (915)
Q Consensus 536 ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~ 596 (915)
.|.+|......+++-...+..++..++. -+..|.++..++..|..+...
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~------------ee~~L~e~~kE~~~L~~Er~~ 50 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN------------EEKCLEEYRKEMEELLQERMA 50 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777777766665431 124556666664444444433
No 263
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=75.31 E-value=1 Score=45.19 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=15.1
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+++....|...+|+.+|.+|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 333334566778999999999999987
No 264
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.26 E-value=1.3e+02 Score=32.89 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHH
Q 002498 792 NARMERIASLENMLNMSSKALVE 814 (915)
Q Consensus 792 ~~~~~qi~~l~~~~~~~~~~~~~ 814 (915)
..++..|..|+.++.+.--++..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777665444433
No 265
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.21 E-value=2.3e+02 Score=35.50 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 382 QKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (915)
Q Consensus 382 ~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~~eL~e~~ 432 (915)
.+-+.++..|+.+|... ....-.++.++.-|..-..+...+|...+
T Consensus 20 ekae~e~~~lk~~l~~~-----~~~~~~~e~r~~hld~aLkec~~qlr~~r 65 (769)
T PF05911_consen 20 EKAEAEAASLKQQLEAA-----TQQKLALEDRVSHLDGALKECMRQLRQVR 65 (769)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 34455566666655421 11112244455555444444444444333
No 266
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.12 E-value=1.6e+02 Score=33.79 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
.-..+....++.+++.+......+.. .-..-...++++..|+...+.|+....++..-...
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~n~~l~e--~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~ 320 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQNDNLYE--KIQEAMKISQKIKTLREKWRALKSDSNKYENYVNA 320 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33455666666666666555444330 00122334567777777777776666665554433
No 267
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.07 E-value=1.4 Score=54.33 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.9
Q ss_pred hhHHhhhc--CCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~--G~n~ti~ayGqtgSGKT~Tm 98 (915)
.++..++. |-+.+||.||+||+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 44555554 44556789999999999998
No 268
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.02 E-value=2.2e+02 Score=35.38 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=14.7
Q ss_pred EeeeeeeecCCCccccccCCCccc
Q 002498 260 CAKLHLVDLAGSERAKRTGSDGLR 283 (915)
Q Consensus 260 ~s~l~~VDLAGsEr~~~~~~~g~~ 283 (915)
+..-.+.|-...+|.--+.+.|..
T Consensus 367 cpI~L~~Dp~~~~ryy~~H~~GvH 390 (717)
T PF10168_consen 367 CPIRLHRDPLNPDRYYCYHNAGVH 390 (717)
T ss_pred cceEEEecCCCCceEEEEecCccE
Confidence 333356788878877655555543
No 269
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.98 E-value=21 Score=36.58 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhHHHHH
Q 002498 796 ERIASLENMLNMSSKALVEMASQLSEAEER 825 (915)
Q Consensus 796 ~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~ 825 (915)
..+.+++..+...+.++.++....+++...
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~ 96 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQ 96 (194)
T ss_dssp ------------------------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 444555555555555554444444444443
No 270
>PRK11281 hypothetical protein; Provisional
Probab=74.79 E-value=2.8e+02 Score=36.37 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHH
Q 002498 606 KSDEAAKRLQAEIQS 620 (915)
Q Consensus 606 k~e~~~~~l~~ei~~ 620 (915)
+.+..+..|++.|.+
T Consensus 238 ~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 238 RLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 271
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.72 E-value=1e+02 Score=33.66 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhccc
Q 002498 666 KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSAREN 706 (915)
Q Consensus 666 kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~ 706 (915)
+++..-+.-.....-|.+|+...++||.|.+.-+......+
T Consensus 145 ~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ey 185 (401)
T PF06785_consen 145 CLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEY 185 (401)
T ss_pred HHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334445577888888999998887665544444
No 272
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=74.70 E-value=1.3 Score=49.62 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=35.2
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhc--C--CCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--G--YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~--G--~n~ti~ayGqtgSGKT~Tm 98 (915)
++.||++.+.-.. ...|.+.++-.++.+++. | .---|+.||++|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 4677777654333 456677777777777774 2 3345788999999999874
No 273
>PF15294 Leu_zip: Leucine zipper
Probab=74.05 E-value=1.2e+02 Score=32.90 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCcchhhhhhhHHHHHHHHHHH
Q 002498 512 EQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA------NSDGHTQKMQDGHTLKLKALEA 585 (915)
Q Consensus 512 e~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee------~~~~~~~Klk~~~e~~l~~le~ 585 (915)
+.+..++..+. .+...+..++..++.+.-..-+|+.++...+..+.- ...+..-+- +.+.+||.
T Consensus 128 ~ll~kEi~rLq-----~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~-----q~l~dLE~ 197 (278)
T PF15294_consen 128 ELLNKEIDRLQ-----EENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKA-----QDLSDLEN 197 (278)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc-----cchhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002498 586 QILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (915)
Q Consensus 586 ~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~ 665 (915)
.++.++ .++++.-...+...+.|.+.+..-++.....+ .+|.-.....+...+
T Consensus 198 k~a~lK------~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Q---------------------eqL~~aekeLekKfq 250 (278)
T PF15294_consen 198 KMAALK------SELEKALQDKESQQKALEETLQSCKHELLRVQ---------------------EQLSLAEKELEKKFQ 250 (278)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------hhhhcchhhHHHHhC
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002498 666 KLEALNQRQKMVLQRKTEEAAIATKRLK 693 (915)
Q Consensus 666 kle~~~~~q~~~l~rk~eE~~a~~k~Lk 693 (915)
.-- ....-..+|.+|-+++-+.+++|.
T Consensus 251 qT~-ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 251 QTA-AYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred ccH-HHHHhHHHHHhccHHHHHHHHHhc
No 274
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=73.83 E-value=1.7 Score=44.20 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=20.1
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+++..++.. ...|+-.|+||||||++|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34455555543 345667899999999987
No 275
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=73.15 E-value=1.7 Score=47.93 Aligned_cols=75 Identities=24% Similarity=0.249 Sum_probs=44.5
Q ss_pred hhHHhhhcCCCceEEeeccCCCCcccccC---C--CCC---------------------------CCCccccHHHHHHHH
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTMG---T--GLR---------------------------EGFQTGLIPQVMNAL 118 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm~---g--~~~---------------------------~~~~~Glipr~~~~l 118 (915)
+++-.+..++ +.|+..|.||||||+++- + +++ +....|-+ .+.+|
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gev--tm~dL 240 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEV--TMRDL 240 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceE--EHHHH
Confidence 4444555555 778889999999999971 1 110 11112222 35566
Q ss_pred HHHHHhccccceeEEEEeheehhhhhhhhccCCcc
Q 002498 119 FNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (915)
Q Consensus 119 F~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~ 153 (915)
...--.+.++. +=+-||+..+.+|||..-+
T Consensus 241 vkn~LRmRPDR-----IiVGEVRG~Ea~dLL~Amn 270 (355)
T COG4962 241 VKNALRMRPDR-----IIVGEVRGVEALDLLQAMN 270 (355)
T ss_pred HHHHhhcCccc-----eEEEEecCccHHHHHHHhc
Confidence 54433333332 2356999999999997644
No 276
>PRK06547 hypothetical protein; Provisional
Probab=73.00 E-value=2.1 Score=43.00 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=20.7
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+..++..+..+.--.|+.+|++|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555555555666799999999875
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=72.93 E-value=1.2 Score=42.03 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=19.3
Q ss_pred eEEee-ccCCCCcccccCCCCCCCCccccHHHHHHHHHHH
Q 002498 83 TVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNK 121 (915)
Q Consensus 83 ti~ay-GqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~ 121 (915)
.|+++ |+||+||||+- ..+.+.||..
T Consensus 54 LVlSfHG~tGtGKn~v~-------------~liA~~ly~~ 80 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS-------------RLIAEHLYKS 80 (127)
T ss_pred EEEEeecCCCCcHHHHH-------------HHHHHHHHhc
Confidence 46655 99999999986 4566677754
No 278
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.92 E-value=1.8e+02 Score=33.33 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 002498 678 LQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 678 l~rk~eE~~a~~k~Lke~le 697 (915)
++..+.++.+.+..++..++
T Consensus 251 ~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 251 AQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555554
No 279
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.91 E-value=2.4e+02 Score=34.77 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
+++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557899999999988
No 280
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=72.87 E-value=1.2 Score=51.14 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=31.0
Q ss_pred EEEeceeecCCCCCccccccccchhhHH-hhhc--C--CCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~-~~l~--G--~n~ti~ayGqtgSGKT~Tm 98 (915)
.++|+.|.+.+ ..-..+.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~-~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLD-IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 46677776643 2233444444445443 2333 3 3457889999999999987
No 281
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=72.82 E-value=1.8 Score=46.77 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=55.1
Q ss_pred CeEEEeceeecCCCCCccccccccchhhHHhhh-c--CCCc--eEEeeccCCCCcccc-------cCCCCC-------CC
Q 002498 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF-Q--GYNA--TVLAYGQTGSGKTYT-------MGTGLR-------EG 105 (915)
Q Consensus 45 ~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l-~--G~n~--ti~ayGqtgSGKT~T-------m~g~~~-------~~ 105 (915)
+..++||+|-+.. .+-.++-+.+.-|++...+ . |+.. .++-||+.|+|||+- |+-+|- ..
T Consensus 126 ~~~~s~~~~ggl~-~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 126 PRNISFENVGGLF-YQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred ccccCHHHhCChH-HHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 4578999988642 3345666777778887654 2 4332 468899999999984 443331 23
Q ss_pred CccccHHHHHHHHHHHHHhc
Q 002498 106 FQTGLIPQVMNALFNKIETL 125 (915)
Q Consensus 106 ~~~Glipr~~~~lF~~i~~~ 125 (915)
...|=-.|++++.|.+....
T Consensus 205 kyiGEsaRlIRemf~yA~~~ 224 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREV 224 (388)
T ss_pred hhcccHHHHHHHHHHHHhhh
Confidence 34577789999999988764
No 282
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=72.74 E-value=3.6 Score=50.94 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.0
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..+.+|.|+.|+| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 456677999999887 9999999875
No 283
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.68 E-value=2.1 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.1
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
....+.++.+|++|||||+++
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHH
Confidence 434557888999999999887
No 284
>PHA00729 NTP-binding motif containing protein
Probab=72.47 E-value=2.2 Score=44.75 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=21.2
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..++..+..|--..|+.+|.+|+||||..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44556665433347899999999999987
No 285
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.45 E-value=1.6 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.5
Q ss_pred cCC-CceEEeeccCCCCccccc
Q 002498 78 QGY-NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~-n~ti~ayGqtgSGKT~Tm 98 (915)
.|. ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456666999999999988
No 286
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.32 E-value=97 Score=29.97 Aligned_cols=91 Identities=16% Similarity=0.264 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002498 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKS 607 (915)
Q Consensus 528 ~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~ 607 (915)
..+..+.+++-.|+.++...+.....+..+..+.. +.-..+...+..|-..+++|. .+..-+.+.|..+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k--------~eie~L~~el~~lt~el~~L~---~EL~~l~sEk~~L 85 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSK--------AEIETLEEELEELTSELNQLE---LELDTLRSEKENL 85 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33444556666666666666666666555544321 111222233333333322222 2222244444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002498 608 DEAAKRLQAEIQSIKAQKVQLQ 629 (915)
Q Consensus 608 e~~~~~l~~ei~~lk~~k~~L~ 629 (915)
...+...+..|.+|......+.
T Consensus 86 ~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 86 DKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555556666666655555553
No 287
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.31 E-value=1.7e+02 Score=32.69 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKE 649 (915)
Q Consensus 570 ~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE 649 (915)
.-++..+...+..|+.+...|. .....+....-++......|..++..++.....+-.--+++...++..=.....+
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~---~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLD---KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 3344444444555555533332 2233344455555555555555555555554443333334444444444444444
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q 002498 650 LLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 650 ~~~Lkk~~rk~~~~~~kle 668 (915)
|...+++-...+.++..++
T Consensus 225 i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 288
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.18 E-value=63 Score=38.31 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHHHHHh
Q 002498 109 GLIPQVMNALFNKIET 124 (915)
Q Consensus 109 Glipr~~~~lF~~i~~ 124 (915)
|.|.++...|=..+..
T Consensus 164 ~av~~~~reIee~L~~ 179 (652)
T COG2433 164 GAVKRVVREIEEKLDE 179 (652)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666666666555554
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=71.84 E-value=1.6 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4544 567999999999998
No 290
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.67 E-value=2.4e+02 Score=34.16 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.8
Q ss_pred EeeccCCCCccccc
Q 002498 85 LAYGQTGSGKTYTM 98 (915)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (915)
+-+|+||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999998877
No 291
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=71.27 E-value=1.8 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=17.5
Q ss_pred hhcCCCceEEeeccCCCCccccc
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
++.-.++.++..|..|||||+||
T Consensus 8 ~i~~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 8 IIRSTEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp HHHS-SSEEEEEE-TTSSHHHHH
T ss_pred HHhCCCCCEEEEeCCCCCchHHH
Confidence 33347888889999999999999
No 292
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=71.12 E-value=1.8 Score=45.63 Aligned_cols=17 Identities=47% Similarity=0.753 Sum_probs=14.6
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
-+|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 36888999999999875
No 293
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=71.01 E-value=1.8 Score=48.60 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=18.6
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.++..+.. ..+.|+..|+||||||++|
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2344677899999999998
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=70.92 E-value=7.2 Score=49.34 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=49.6
Q ss_pred ceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhh-hhhhhccCCccccccccc
Q 002498 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK-EEVRDLLDSVSVSKSVTA 160 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~-e~v~DLL~~~~~~~~~~~ 160 (915)
++++-+|+||+|||++. ..+...||. ...+.+.+.+-+... ..+.-|+.+++. .
T Consensus 597 ~~~lf~Gp~GvGKT~lA-------------~~La~~l~~-------~~~~~~~~dmse~~~~~~~~~l~g~~~g-----y 651 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA-------------LALAELLYG-------GEQNLITINMSEFQEAHTVSRLKGSPPG-----Y 651 (852)
T ss_pred eEEEEECCCCCCHHHHH-------------HHHHHHHhC-------CCcceEEEeHHHhhhhhhhccccCCCCC-----c
Confidence 46888999999999987 122334442 122445555544432 234445433221 0
Q ss_pred CCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcc
Q 002498 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGS 209 (915)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~ 209 (915)
-|... .+.-.-.++..|..-+.+..+....-.-..-++++|..|.
T Consensus 652 vg~~~----~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 652 VGYGE----GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGV 696 (852)
T ss_pred ccccc----cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcce
Confidence 01000 0000012334555666777776555544555667777664
No 295
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=70.80 E-value=2.3 Score=43.99 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=16.2
Q ss_pred HHhhhcCCCceEEeeccCCCCccccc
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 73 v~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
++.++ .+-.|++.|+.||||||.-
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHH
Confidence 44444 5557899999999999886
No 296
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=70.69 E-value=2.1 Score=46.79 Aligned_cols=27 Identities=44% Similarity=0.722 Sum_probs=21.1
Q ss_pred hhHHhhhcCCC---ceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n---~ti~ayGqtgSGKT~Tm 98 (915)
|.+...+.|-- -|||+ |+||||||+.|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 67777887753 46665 99999999887
No 297
>PRK13764 ATPase; Provisional
Probab=70.53 E-value=2.1 Score=51.33 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.5
Q ss_pred hhhcCCCceEEeeccCCCCccccc
Q 002498 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 75 ~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+......|+..|+||||||+++
T Consensus 251 ~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 251 ERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 333344555899999999999999
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=70.36 E-value=1.8 Score=41.51 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+.+|++|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 299
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=69.96 E-value=2.3 Score=47.57 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=18.6
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.++..++.+. ..|+..|+||||||++|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 3444444332 44677899999999998
No 300
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=69.86 E-value=1.8 Score=46.68 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=37.2
Q ss_pred EEeeccCCCCcccccC----C----CCCC-----CCccccHHHHHHHHHHH--HHhc---cccc----------eeEEEE
Q 002498 84 VLAYGQTGSGKTYTMG----T----GLRE-----GFQTGLIPQVMNALFNK--IETL---RHQM----------EFQLHV 135 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm~----g----~~~~-----~~~~Glipr~~~~lF~~--i~~~---~~~~----------~~~v~v 135 (915)
...||+|||||++.+- + +.+. ..+.|+||-.=...++. .+.. ..+. .-.|.+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~m 169 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVEM 169 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccceee
Confidence 4569999999999872 1 1111 23568888644333322 1110 1111 112666
Q ss_pred eheehhhhhhhhccCCc
Q 002498 136 SFIEILKEEVRDLLDSV 152 (915)
Q Consensus 136 S~~EIy~e~v~DLL~~~ 152 (915)
||=|.-.+.=+|.-+|.
T Consensus 170 sy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 170 SYDEATSPENLDITNPN 186 (369)
T ss_pred cHhhhCCccccCCCCch
Confidence 66666666666666553
No 301
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=69.84 E-value=2.3 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.8
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345888999999999988
No 302
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=69.56 E-value=1.7 Score=39.95 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 303
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=69.40 E-value=7.2 Score=42.91 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.2
Q ss_pred hHHhhhcCCCceEEeeccCCCCcccccCC
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (915)
+|-.++.|.+| +.+..||||||..+-.
T Consensus 37 cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 37 CIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhHHHhccccc--ccccccCCCcchhhhH
Confidence 45567889998 4677999999999844
No 304
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.10 E-value=80 Score=32.21 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (915)
Q Consensus 528 ~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~e 562 (915)
........++..|.+++..+...+..+...+....
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777777666643
No 305
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=69.01 E-value=1.8e+02 Score=31.71 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002498 633 KQEAEQFRQWKASREKELLKLKKEGR 658 (915)
Q Consensus 633 k~e~~~~~~~~~~~~kE~~~Lkk~~r 658 (915)
++.+..++..+.....++.+|+.+--
T Consensus 54 ~e~~~elr~~rdeineev~elK~kR~ 79 (294)
T COG1340 54 REKAQELREERDEINEEVQELKEKRD 79 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555666666665543
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=69.01 E-value=2 Score=46.87 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999999
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.74 E-value=2.2 Score=48.57 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.1
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999999
No 308
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.47 E-value=2.5e+02 Score=33.11 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=52.5
Q ss_pred hhhhhchHHHHHHHHHhhhhccCCCCCcccCCCCcchhhhh-hcCCCCceeeEEeecCCCCCCHHHHHHHHHHHHHh---
Q 002498 288 IHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ-DSLGGNSKTVMIACISPADINAEESLNTLKYANRA--- 363 (915)
Q Consensus 288 ~~IN~sL~~L~~vi~~L~~~~~~~~~~~ipyrdSkLT~lL~-dsLgGns~t~~I~~vsp~~~~~~etl~TL~fa~ra--- 363 (915)
-.|+.||..|.++...++. |-.+-|-.+-. -..|..+.|.+ ++|.. .++ .|.|-.||
T Consensus 213 ~c~~~sl~~l~~~~~k~a~-----------f~~nnld~~~~~~~y~~~~~~~~---~~~~~---~~~--~~~~~~~a~~~ 273 (518)
T PF10212_consen 213 ECILSSLVSLTNGTGKIAA-----------FFSNNLDFFTSSSGYGPKGATTF---TNPLS---AEC--MLQYKKRAAAY 273 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH-----------HHhcchHHhhcccccCCCccccc---CCccc---hHH--HHHHHHHHHHH
Confidence 3566777777776666654 22222322222 22344444443 35532 223 36665555
Q ss_pred -hcccCccccccccchHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 002498 364 -RNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLC 425 (915)
Q Consensus 364 -~~iknkp~vn~d~~~~~i~~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~~L~ 425 (915)
..+ .+|.....|....+..- .|-.--.+ .+ .+....++...++|+.|+.+++...
T Consensus 274 ~~~~-~~p~~~svpy~~a~~n~--ril~sste--s~--e~L~qqV~qs~EKIa~LEqEKEHw~ 329 (518)
T PF10212_consen 274 MSSL-KKPCPESVPYEEALANR--RILLSSTE--SR--EGLAQQVQQSQEKIAKLEQEKEHWM 329 (518)
T ss_pred HHHh-cCCCCccCChHHHHhhh--HHHhhhHH--hH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 45655555555444321 11100000 00 0122346667778888877777644
No 309
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=68.32 E-value=2.2 Score=42.88 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
+.++-+||||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 310
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.19 E-value=1.2e+02 Score=29.49 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.1
Q ss_pred HHhHHH
Q 002498 679 QRKTEE 684 (915)
Q Consensus 679 ~rk~eE 684 (915)
+||-.|
T Consensus 136 rkke~E 141 (151)
T PF11559_consen 136 RKKERE 141 (151)
T ss_pred HHHHHH
Confidence 333333
No 311
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.02 E-value=0.92 Score=52.01 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.4
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 446889999999999876
No 312
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.53 E-value=3.3 Score=41.37 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=18.1
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
++..+..+. ..++..|+||||||+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHH
Confidence 344555543 34566799999999988
No 313
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.47 E-value=2.4 Score=47.97 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.7
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778899999999998
No 314
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.38 E-value=2.5 Score=45.88 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.8
Q ss_pred ceEEeeccCCCCcccc
Q 002498 82 ATVLAYGQTGSGKTYT 97 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~T 97 (915)
+-|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4588899999999975
No 315
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.38 E-value=4.7 Score=42.77 Aligned_cols=28 Identities=39% Similarity=0.641 Sum_probs=23.5
Q ss_pred hhHH-hhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVD-GLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~-~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+|. ++-+||.--|++.|.||-|||+.|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 3444 456899999999999999999887
No 316
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.18 E-value=93 Score=32.26 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=10.5
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 002498 678 LQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 678 l~rk~eE~~a~~k~Lke~le 697 (915)
++.+.+.+.+.+..+++...
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 151 AQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666665544
No 317
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=67.15 E-value=4e+02 Score=35.06 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002498 838 LRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIK-----EQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSA 912 (915)
Q Consensus 838 ~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~-----~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~~~ 912 (915)
.+.+.++-..+.++-+......+++.....++.+.. ....-|......+-.+...+..+...++.++..+.+++.
T Consensus 1000 ~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1000 RERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555555555555555544444 344445555555666666677777777777777777665
No 318
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=67.13 E-value=2.2 Score=39.81 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999887
No 319
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=67.09 E-value=2.1 Score=40.99 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+.+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999887
No 320
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.86 E-value=3e+02 Score=33.50 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002498 499 TMDKELNELNKRLEQKESEMKL 520 (915)
Q Consensus 499 ~l~~el~eL~~~Le~kE~~~~k 520 (915)
.+...+..|+..|+..|..+..
T Consensus 109 q~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 109 QNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred hhHHhhhhhhHHHHHhhHhhHh
Confidence 3445556666677766655544
No 321
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=66.70 E-value=2.3 Score=44.53 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|.-.|++|||||+.|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 322
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.65 E-value=2.7 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.6
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333334555557777999999999887
No 323
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=66.65 E-value=4.5 Score=46.92 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.7
Q ss_pred eEEeeccCCCCccccc---CCCCCCCCccccHHHHHHHHHHHHHhc
Q 002498 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm---~g~~~~~~~~Glipr~~~~lF~~i~~~ 125 (915)
-||..|||.|||||-- ++...++-..|=+-...+++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 333345566788888899999988763
No 324
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.55 E-value=73 Score=33.00 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 002498 579 KLKALEAQILELK 591 (915)
Q Consensus 579 ~l~~le~~l~~L~ 591 (915)
++..++.++.+|+
T Consensus 94 rlp~le~el~~l~ 106 (206)
T PRK10884 94 RVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 325
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=66.55 E-value=2.6 Score=34.59 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 326
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=66.44 E-value=2.2 Score=44.08 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.6
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
-++.+|.||||||++|
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5678999999999999
No 327
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=66.41 E-value=2.5 Score=51.42 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=31.2
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.-+||.+++.. .. +..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RA----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HH----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46788888532 22 223456666788888999999999999876
No 328
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=66.30 E-value=2.8 Score=45.18 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 329
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=66.28 E-value=4.5 Score=45.34 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCceEEeeccCCCCccccc
Q 002498 80 YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..|+-.|++|||||+..
T Consensus 77 ~r~il~L~GPPGsGKStla 95 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788899999999764
No 330
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=66.13 E-value=3.2 Score=49.18 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=22.0
Q ss_pred chhhHHhhhcCCC--ceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n--~ti~ayGqtgSGKT~Tm 98 (915)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4455666555543 46778999999999998
No 331
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=66.05 E-value=3.6 Score=42.11 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=19.0
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455666887 466789999999874
No 332
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.01 E-value=2.2 Score=44.59 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcchhhcCC---------ceEEEEeCCCcceeec---C---eEEEeceeecCCCCCccccccccchhhH
Q 002498 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNPQVQIG---T---HSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (915)
Q Consensus 9 ~v~V~vRvRP~~~~e~~~~~---------~~~~~~~~~~~~~~~~---~---~~f~FD~Vf~~~~~~q~~vy~~~~~~lv 73 (915)
.-.-+|||-...++|....+ ...|.|.|.+...++. . -..+|..|=+-+ -+.++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld-~qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLD-VQKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccch-hhHHHHHHHHhccch
Confidence 34568898888777753321 1122233332211111 0 123333333322 233455555555666
Q ss_pred Hhhh---cCCC--ceEEeeccCCCCcccccCC-------CC----C---CCCccccHHHHHHHHHHHHHhcc
Q 002498 74 DGLF---QGYN--ATVLAYGQTGSGKTYTMGT-------GL----R---EGFQTGLIPQVMNALFNKIETLR 126 (915)
Q Consensus 74 ~~~l---~G~n--~ti~ayGqtgSGKT~Tm~g-------~~----~---~~~~~Glipr~~~~lF~~i~~~~ 126 (915)
+.-+ -|++ -.|+.||++|+|||...-. .| + -...-|==||.++++|.......
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 5444 2544 3589999999999854310 00 0 01123666999999998776543
No 333
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.57 E-value=1.7e+02 Score=30.29 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 002498 665 HKLEALNQRQKMVLQRKTEEA 685 (915)
Q Consensus 665 ~kle~~~~~q~~~l~rk~eE~ 685 (915)
.+.++.-.++.++++||..++
T Consensus 125 ~kr~~~~Ka~e~~~kRkQdsa 145 (246)
T KOG4657|consen 125 QKRQALSKAKENAGKRKQDSA 145 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 344444555666666665554
No 334
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=65.50 E-value=5.8 Score=47.56 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.1
Q ss_pred CCCceEEeeccCCCCccccc
Q 002498 79 GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (915)
-....|+.||++|+||||..
T Consensus 699 r~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccccceEEECCCCCcHHHHH
Confidence 44567999999999999986
No 335
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.24 E-value=91 Score=32.25 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHH
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~ 576 (915)
.....++.+++.++.+.+.+...++.++++.++...-+++++
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445566777777777777777766666555554444444444
No 336
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.90 E-value=2.9e+02 Score=32.65 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002498 533 FGKKIMELEEEKRIVQQERDRLL 555 (915)
Q Consensus 533 ~~~ki~~Le~ei~~le~e~~~l~ 555 (915)
++.++..++.+....+.......
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443
No 337
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=64.54 E-value=12 Score=42.63 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=32.5
Q ss_pred cCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhhccC
Q 002498 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLD 150 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~DLL~ 150 (915)
.|.-++| +|+.|+|||. | +..|++.+... +.++.+.|..+.=+.+.|.|+..
T Consensus 168 kGQR~lI--vgppGvGKTT-L----------------aK~Ian~I~~n--hFDv~~~VvLIgER~~EVtdiqr 219 (416)
T PRK09376 168 KGQRGLI--VAPPKAGKTV-L----------------LQNIANSITTN--HPEVHLIVLLIDERPEEVTDMQR 219 (416)
T ss_pred cCceEEE--eCCCCCChhH-H----------------HHHHHHHHHhh--cCCeEEEEEEeCCchhHHHHHHH
Confidence 5555555 5899999994 4 34567666553 23344444444446678888874
No 338
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=64.52 E-value=77 Score=26.59 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHh
Q 002498 861 QLWEKDTEIKEIKEQLNDLVALLKQSEAQ---RKE-LVKQQRMREQAVTIALA 909 (915)
Q Consensus 861 ql~~~~~~l~e~~~~~~~l~~~~~~~e~e---~~~-l~~~~~~~~~~~~~l~~ 909 (915)
...++..+++..+..+..+.+...+...- .+- |..+...+.+|||+|--
T Consensus 11 EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAE 63 (69)
T PF08912_consen 11 EKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAE 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666666666555544332222 222 78888999999999853
No 339
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.49 E-value=1.9e+02 Score=30.27 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 002498 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR-QWKASREKELLKLKKE 656 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~-~~~~~~~kE~~~Lkk~ 656 (915)
+.+.+++.. |.+......+....+..++.++..+...+.....+-..-+++=+++..+.- ..+...+..+..|...
T Consensus 31 q~irem~~~---l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 31 LIIQEMEDT---LVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556655 455555566666666677777777777776665554444444444443322 2233333334444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002498 657 GRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (915)
Q Consensus 657 ~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lk 693 (915)
-......+.+|+ .+..-|+++++++.+....|.
T Consensus 108 ~~~~~~~v~~l~----~~l~~L~~ki~~~k~k~~~l~ 140 (219)
T TIGR02977 108 LAAVEETLAKLQ----EDIAKLQAKLAEARARQKALA 140 (219)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 444334333333 223344455555544444333
No 340
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.47 E-value=3.3 Score=46.44 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCcccc
Q 002498 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (915)
Q Consensus 48 f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~T 97 (915)
-+||.|+| |+.+... ..|+=.-+-.|--.+.+-|||+|+|||+.
T Consensus 21 ~~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 21 KSLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CCHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35677764 3334333 34444444456666777899999999976
No 341
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=63.84 E-value=3.5 Score=46.62 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.2
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 555666799999999999
No 342
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.47 E-value=2e+02 Score=30.26 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHH
Q 002498 569 TQKMQDGHTLKLKALEAQILELKKK-QESQVELLKQKHKSDE 609 (915)
Q Consensus 569 ~~Klk~~~e~~l~~le~~l~~L~~~-~~~~~~l~k~k~k~e~ 609 (915)
...+..+++.+|+++|.+..+|... ++-..+++..|.+.+.
T Consensus 43 SrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 43 SREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED 84 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888776666532 2334455555555543
No 343
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.07 E-value=2.4e+02 Score=31.02 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 002498 738 NVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEMAS 817 (915)
Q Consensus 738 ~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~l~~~~~~~~~~~~~l~~ 817 (915)
.++-+...+..+.+++..|-.|...|+..... + ++..+.-|.+...++..++.++..|..
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-------------------~-EekEqqLv~dcv~QL~~An~qia~Lse 220 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDT-------------------Y-EEKEQQLVLDCVKQLSEANQQIASLSE 220 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-------------------c-cHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 35555667777778888888888877763211 0 122334466666666666666666554
Q ss_pred HhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 818 QLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQ 897 (915)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~ 897 (915)
.+..-.++.. .--..|.+|-.--..+++..+....+...+. ..|...+..-..|..+++.++..+.++...+
T Consensus 221 ELa~k~Ee~~-----rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~---q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 221 ELARKTEENR-----RQQEEITSLLSQIVDLQQRCKQLAAENEELQ---QHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322221 1113455555555666666666666444444 4477777777778888888888888888888
Q ss_pred HHHHHHHHHHH
Q 002498 898 RMREQAVTIAL 908 (915)
Q Consensus 898 ~~~~~~~~~l~ 908 (915)
.+.++.+..+-
T Consensus 293 ~EaQEElk~lR 303 (306)
T PF04849_consen 293 HEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHhh
Confidence 88877776653
No 344
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.57 E-value=1.2e+02 Score=33.70 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHH
Q 002498 680 RKTEEAAIATKRLK 693 (915)
Q Consensus 680 rk~eE~~a~~k~Lk 693 (915)
.++.-+...+.+|+
T Consensus 120 ~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 120 NQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555566665
No 345
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.46 E-value=2.9 Score=46.18 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=63.4
Q ss_pred CCeEEEEEcCCCCcchh-hcCCceEE--------EEeCCC--cceee----cCeEEEeceeecCCCCCccccccccchhh
Q 002498 8 CSVKVAVHVRPLIGDER-AQGCKECV--------AVTHGN--PQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (915)
Q Consensus 8 ~~v~V~vRvRP~~~~e~-~~~~~~~~--------~~~~~~--~~~~~----~~~~f~FD~Vf~~~~~~q~~vy~~~~~~l 72 (915)
+.-+.+|++.|..+++. ..|+..++ .+.|.. |.|.. ..-.-+|+.|=|- ..+-++|.+.+--|+
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL-~~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGL-DEQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCH-HHHHHHHHHHhcccc
Confidence 34577888888877664 33443332 222222 11111 0112344444432 123356666666666
Q ss_pred HH-hhhc--CCCc--eEEeeccCCCCccccc--------------CCCCCCCCccccHHHHHHHHHHHHHhccc
Q 002498 73 VD-GLFQ--GYNA--TVLAYGQTGSGKTYTM--------------GTGLREGFQTGLIPQVMNALFNKIETLRH 127 (915)
Q Consensus 73 v~-~~l~--G~n~--ti~ayGqtgSGKT~Tm--------------~g~~~~~~~~Glipr~~~~lF~~i~~~~~ 127 (915)
.+ .+|. |+.- .|+.||++|+|||-.- .|+.--...-|==+|.+++||.......+
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 65 3342 6543 5899999999998653 11000001124448999999988766443
No 346
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=62.35 E-value=3.7e+02 Score=33.02 Aligned_cols=70 Identities=19% Similarity=0.217 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHH
Q 002498 682 TEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS-----------ANVHEVRFKYEKQS 750 (915)
Q Consensus 682 ~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~-----------~~l~e~~~~~~~~~ 750 (915)
-.|+....++++...+.++.-.++. ....|.++.+.+....+.+ .++.-++.+++..+
T Consensus 399 ~~E~e~l~q~l~~~~k~e~~e~~k~-----------~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Q 467 (698)
T KOG0978|consen 399 RAETESLLQRLKALDKEERSEIRKQ-----------ALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQ 467 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777666665433322 0112334333333333332 23444566778888
Q ss_pred HHHHHHHHHHHH
Q 002498 751 QVQAALADELTI 762 (915)
Q Consensus 751 e~r~~l~~el~~ 762 (915)
+.+.++-.++.+
T Consensus 468 eqn~kL~~el~e 479 (698)
T KOG0978|consen 468 EQNQKLLQELRE 479 (698)
T ss_pred HHHHHHHHHHHH
Confidence 888887777754
No 347
>PRK10536 hypothetical protein; Provisional
Probab=62.32 E-value=4.6 Score=43.13 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.7
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
+..|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348899999999999986
No 348
>PTZ00424 helicase 45; Provisional
Probab=62.25 E-value=4 Score=46.80 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.2
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+..++.|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456667889885 46789999999875
No 349
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=61.69 E-value=3.6 Score=42.34 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=13.9
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...||..|++|||||+++
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 346788899999999887
No 350
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.66 E-value=1.3e+02 Score=27.50 Aligned_cols=54 Identities=35% Similarity=0.346 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (915)
Q Consensus 576 ~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~ 632 (915)
+..++..|+..|. ..+-.+.+|.+.+..++..+..|+.+-...-+...+|+.++
T Consensus 14 l~n~La~Le~slE---~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki 67 (107)
T PF09304_consen 14 LQNRLASLERSLE---DEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI 67 (107)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555522 22333334555555555555555555544444444444333
No 351
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.49 E-value=14 Score=45.47 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.1
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...++-||+.|+|||.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999875
No 352
>PF14992 TMCO5: TMCO5 family
Probab=61.45 E-value=2.4e+02 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002498 535 KKIMELEEEKRIVQQERDRLLAEIENLAA 563 (915)
Q Consensus 535 ~ki~~Le~ei~~le~e~~~l~~~l~~~ee 563 (915)
.-+.+|+.+...|+.+..-+...+..+..
T Consensus 63 ~~l~~le~e~~~LE~~ne~l~~~~~elq~ 91 (280)
T PF14992_consen 63 TDLQELELETAKLEKENEHLSKSVQELQR 91 (280)
T ss_pred HHHHHHHhhhHHHhhhhHhhhhhhhhhhh
Confidence 33566677777777776666555454443
No 353
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=61.17 E-value=3.7 Score=42.41 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=12.0
Q ss_pred EeeccCCCCccccc
Q 002498 85 LAYGQTGSGKTYTM 98 (915)
Q Consensus 85 ~ayGqtgSGKT~Tm 98 (915)
.-.||+|||||+.+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999887
No 354
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=60.91 E-value=3.8 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.3
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|.-..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 455557888999999999887
No 355
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=60.80 E-value=1.1e+02 Score=27.45 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 501 ~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
...+..+-.++-..|..+.++. ..+...+++.......+..+..++..|...+.-
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~-----~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLE-----AEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555 666667777777777777777777777665443
No 356
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=60.64 E-value=3.9e+02 Score=32.73 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.8
Q ss_pred CCCceEEeeccCCCCccccc
Q 002498 79 GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (915)
-.+.+|+.-|.+|+|||-.-
T Consensus 142 k~SQSIIVSGESGAGKTEst 161 (1259)
T KOG0163|consen 142 KLSQSIIVSGESGAGKTEST 161 (1259)
T ss_pred hhcccEEEecCCCCCcchhH
Confidence 45778999999999999764
No 357
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.44 E-value=4.5 Score=44.27 Aligned_cols=28 Identities=39% Similarity=0.527 Sum_probs=21.2
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|++ ..+.--+..|-.||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 444556678889999999999987
No 358
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.26 E-value=3.4e+02 Score=31.82 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=12.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 002498 676 MVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 676 ~~l~rk~eE~~a~~k~Lke~le 697 (915)
......+.++.+.+..++..++
T Consensus 287 ~~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 287 AKVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565666665554
No 359
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.96 E-value=3.4e+02 Score=31.83 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHHHHHHHHHHHHHhh
Q 002498 728 WLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNM 807 (915)
Q Consensus 728 ~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~qi~~l~~~~~~ 807 (915)
|+--.........+.......+...-.....++..+....+. .+....++..+......
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~ 78 (475)
T PRK10361 20 WLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAE---------------------CELLNNEVRSLQSINTS 78 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHH
Q 002498 808 SSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQL----------WEKDTEIKEIKEQLN 877 (915)
Q Consensus 808 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql----------~~~~~~l~e~~~~~~ 877 (915)
.......+...+........ ..+..+.+++..|..-|+.+++..-+- ..+..-|.-+++++.
T Consensus 79 ~~~~~~~l~~~le~~~~~~~--------ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~ 150 (475)
T PRK10361 79 LEADLREVTTRMEAAQQHAD--------DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLD 150 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccCC
Q 002498 878 DLVALLKQSEAQRKE----LVKQQRMREQAVTIALASSASMT 915 (915)
Q Consensus 878 ~l~~~~~~~e~e~~~----l~~~~~~~~~~~~~l~~~~~~~~ 915 (915)
.+..++.+++.+... |.+++....+....+.....+|+
T Consensus 151 ~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 151 GFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 360
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=59.84 E-value=4 Score=42.74 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=16.2
Q ss_pred CceEEeeccCCCCcccccC
Q 002498 81 NATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm~ 99 (915)
...++-||++|+|||++..
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3558999999999999883
No 361
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=59.81 E-value=3.8 Score=43.29 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.3
Q ss_pred eccCCCCccccc
Q 002498 87 YGQTGSGKTYTM 98 (915)
Q Consensus 87 yGqtgSGKT~Tm 98 (915)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 362
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.63 E-value=2.8e+02 Score=30.73 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 002498 501 DKELNELNKRLEQKESEMKLFG 522 (915)
Q Consensus 501 ~~el~eL~~~Le~kE~~~~kl~ 522 (915)
+--+.+|.+.|.+-......++
T Consensus 69 ~~sC~EL~~~I~egr~~~~~~E 90 (312)
T smart00787 69 QFSCKELKKYISEGRDLFKEIE 90 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666655554444443
No 363
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.59 E-value=5.2 Score=47.01 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.4
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++.|.| |++.++||||||.+.
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 3455678887 677889999999764
No 364
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=59.51 E-value=3.7 Score=46.96 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 365
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=59.22 E-value=4.8 Score=45.20 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=22.1
Q ss_pred chhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
...++..++.+. +.|+..|+||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345666666653 67888999999999987
No 366
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.06 E-value=5.4 Score=42.93 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=48.7
Q ss_pred EeceeecCCCCCccccccccchhh-HHhhhcCCC---ceEEeeccCCCCcccccC---CC----CCCCC-------cccc
Q 002498 49 TFDHVYGNGGSPSSAMFGECVAPL-VDGLFQGYN---ATVLAYGQTGSGKTYTMG---TG----LREGF-------QTGL 110 (915)
Q Consensus 49 ~FD~Vf~~~~~~q~~vy~~~~~~l-v~~~l~G~n---~ti~ayGqtgSGKT~Tm~---g~----~~~~~-------~~Gl 110 (915)
.++-|-+-.+. .+.+-+.++-|+ .-++|.|-- ..|+.||++|+||+|.-- +. |-+-. =.|=
T Consensus 131 kWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 131 KWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred chhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 44555554433 445566666665 356777653 679999999999999741 10 00111 1366
Q ss_pred HHHHHHHHHHHHHhccc
Q 002498 111 IPQVMNALFNKIETLRH 127 (915)
Q Consensus 111 ipr~~~~lF~~i~~~~~ 127 (915)
-.+.+..||.......+
T Consensus 210 SEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 67889999988776544
No 367
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.74 E-value=1.4e+02 Score=27.08 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 870 KEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIA 907 (915)
Q Consensus 870 ~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l 907 (915)
..++..+..+...+..++.+...+..++.+.+..+..+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555544444
No 368
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.73 E-value=3.2e+02 Score=31.13 Aligned_cols=187 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----Cc
Q 002498 500 MDKELNELNKRLEQKESEMKLFGD---------IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN----SD 566 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~---------~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~----~~ 566 (915)
+...-.++..++.-++.....+.. ..+-.+.-++..+...|++..+..+....+-+.+-.....+ ..
T Consensus 213 mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~e 292 (502)
T KOG0982|consen 213 MEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKE 292 (502)
T ss_pred hhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 567 GHTQKMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (915)
Q Consensus 567 ~~~~Klk~~~e~~l~~le~~l~~L~----~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~ 642 (915)
.-..-.++....+++.|+.+...|+ .-.-...++.-.+.+....+..|...+......++.....++. |...
T Consensus 293 Reasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr----fq~e 368 (502)
T KOG0982|consen 293 REASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR----FQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002498 643 KASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLK 693 (915)
Q Consensus 643 ~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lk 693 (915)
+..-+-=+..|+++....+....-+.+.-.-... +...|.....++||
T Consensus 369 keatqELieelrkelehlr~~kl~~a~p~rgrsS---aRe~eleqevkrLr 416 (502)
T KOG0982|consen 369 KEATQELIEELRKELEHLRRRKLVLANPVRGRSS---AREIELEQEVKRLR 416 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh---HHHHHHHHHHHHhc
No 369
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=58.67 E-value=4.1 Score=46.29 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=15.5
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345889999999999887
No 370
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.55 E-value=4.9 Score=43.59 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=19.0
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+++.++.. +--|+.+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444433 556788999999999877
No 371
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.38 E-value=11 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.5
Q ss_pred CCccccHHHHHHHHHHHHHhccc
Q 002498 105 GFQTGLIPQVMNALFNKIETLRH 127 (915)
Q Consensus 105 ~~~~Glipr~~~~lF~~i~~~~~ 127 (915)
+..-|++.|++.+|...+..+..
T Consensus 784 GDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 784 GDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred CCccccHHHHHHHHHHHhhcccC
Confidence 45679999999999999988764
No 372
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=58.32 E-value=11 Score=44.91 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=25.9
Q ss_pred eceeecCCCCCccccccccchhhHHhhh--cCCCceEEeeccCCCCcccc
Q 002498 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKTYT 97 (915)
Q Consensus 50 FD~Vf~~~~~~q~~vy~~~~~~lv~~~l--~G~n~ti~ayGqtgSGKT~T 97 (915)
|+.+||- +++-+.++..+...+. ..-...++-.||+|+|||..
T Consensus 75 F~d~yGl-----ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsL 119 (644)
T PRK15455 75 FEEFYGM-----EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSL 119 (644)
T ss_pred hhcccCc-----HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHH
Confidence 5566652 3444555555544332 33445677779999999943
No 373
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=58.11 E-value=2.5e+02 Score=29.60 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 533 FGKKIMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 533 ~~~ki~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
++.++..|+...+.++.+...+.-+...
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~ 77 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQER 77 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555433
No 374
>PRK04195 replication factor C large subunit; Provisional
Probab=58.07 E-value=5.6 Score=47.07 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=21.7
Q ss_pred chhhHHhhhcCC-CceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G~-n~ti~ayGqtgSGKT~Tm 98 (915)
+..++.....|. ...++.||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344445555554 556888999999999887
No 375
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.80 E-value=5.8e+02 Score=33.73 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002498 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (915)
Q Consensus 725 ~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~ 766 (915)
+.+.+.++++......+....++.+......-.+++.+.+..
T Consensus 512 ~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~~~ 553 (1294)
T KOG0962|consen 512 QKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIKSR 553 (1294)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 355566666666666666666777777777777777766554
No 376
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=57.76 E-value=3.1e+02 Score=30.68 Aligned_cols=261 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 002498 500 MDKELNELNKRLEQKESEMKLFGD---------------------IDTEALRHHFGKKIMELEE----EKRIVQQERDRL 554 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~---------------------~~~~~~~~~~~~ki~~Le~----ei~~le~e~~~l 554 (915)
|+++++.|..+++.-.......+. +.+..|-.....+|.+|.. +...|..|++.|
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrL 375 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRL 375 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 555 LAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ 634 (915)
Q Consensus 555 ~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~ 634 (915)
+.+-.. ....-+..-.-..-.+|+.+ |.+-+--.+..+.++++.-.++..++-+++-+..+
T Consensus 376 LAEETA------ATiSAIEAMKnAhrEEmeRE---LeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQ---------- 436 (593)
T KOG4807|consen 376 LAEETA------ATISAIEAMKNAHREEMERE---LEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQ---------- 436 (593)
T ss_pred hhhhhh------hhhHHHHHHHHHHHHHHHHH---HHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCC
Q 002498 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYT 714 (915)
Q Consensus 635 e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~~~q~~~l~rk~eE~~a~~k~Lke~le~ek~~~~~~~~~~~~~~ 714 (915)
+-..=|+ +--|-.++|+++.+-|.-
T Consensus 437 ---------------------------YSQKCLE--------------------nahLaqalEaerqaLRqC-------- 461 (593)
T KOG4807|consen 437 ---------------------------YSQKCLE--------------------NAHLAQALEAERQALRQC-------- 461 (593)
T ss_pred ---------------------------HHHHHHH--------------------HHHHHHHHHHHHHHHHHH--------
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCCCcccccccCChhHH
Q 002498 715 TPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNAR 794 (915)
Q Consensus 715 ~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e~~~~~~~~~~~~~~~~~~~~l~~~~~ 794 (915)
..|-..-...-++.+..|.+|+..|+.=+-....+.-.+.-..
T Consensus 462 ------------------------QrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqg------------- 504 (593)
T KOG4807|consen 462 ------------------------QRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQG------------- 504 (593)
T ss_pred ------------------------HHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccC-------------
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhHHHHHHHhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002498 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKE 874 (915)
Q Consensus 795 ~~qi~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~ 874 (915)
.---+|+--+-.....|+-|-+.++-+..++- .-+.+-|++..+-....+...-.....+-.|..+++
T Consensus 505 -kdayELEVLLRVKEsEiQYLKqEissLkDELQ-----------talrDKkyaSdKYkDiYtELSiaKakadcdIsrLKE 572 (593)
T KOG4807|consen 505 -KDAYELEVLLRVKESEIQYLKQEISSLKDELQ-----------TALRDKKYASDKYKDIYTELSIAKAKADCDISRLKE 572 (593)
T ss_pred -cchhhHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHH
Q ss_pred HHHHHHHHH
Q 002498 875 QLNDLVALL 883 (915)
Q Consensus 875 ~~~~l~~~~ 883 (915)
++......+
T Consensus 573 qLkaAteAL 581 (593)
T KOG4807|consen 573 QLKAATEAL 581 (593)
T ss_pred HHHHHHHHh
No 377
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=57.54 E-value=5.7 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.1
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|..++.|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556778877 778899999999875
No 378
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=57.47 E-value=7.1 Score=45.31 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999986
No 379
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.29 E-value=4.9e+02 Score=32.72 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=13.4
Q ss_pred hhhhhchHHHHHHHHHhhh
Q 002498 288 IHINRGLLALGNVISALGD 306 (915)
Q Consensus 288 ~~IN~sL~~L~~vi~~L~~ 306 (915)
..|=+|=..+..||..|.-
T Consensus 78 ieiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 78 VEILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHHccHHHHHHHHHHcCC
Confidence 3345577888888888864
No 380
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=57.28 E-value=1.3e+02 Score=33.05 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e 577 (915)
..+...+...+..|..++..+.... .+...++.+...++.........+.........+...|.++.+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~------------~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQ------------AKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002498 578 LKLKALEAQIL-ELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (915)
Q Consensus 578 ~~l~~le~~l~-~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk 622 (915)
..-..+..+.. -+....+.+.++. +.....+...++.+|.+|+
T Consensus 254 ~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 254 EEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 381
>PF05729 NACHT: NACHT domain
Probab=57.17 E-value=4.9 Score=39.27 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+.+|.+|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 382
>PLN03025 replication factor C subunit; Provisional
Probab=57.07 E-value=5.6 Score=44.27 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.5
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..++-||++|+|||++.
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34667999999999998
No 383
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=57.07 E-value=1.6e+02 Score=31.56 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002498 569 TQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (915)
Q Consensus 569 ~~Klk~~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L 628 (915)
..+.++.++++..+||.+ | ++...++..|+.||..+++.=++|
T Consensus 84 VtsQRDRFR~Rn~ELE~e---l--------------r~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEE---L--------------RKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHH---H--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677788888888877 2 233344566777777777776666
No 384
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.05 E-value=3.6e+02 Score=31.08 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=13.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhh
Q 002498 680 RKTEEAAIATKRLKELLEARKSS 702 (915)
Q Consensus 680 rk~eE~~a~~k~Lke~le~ek~~ 702 (915)
.++.++..+++.|--.+++++..
T Consensus 435 ~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 435 EKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHhHheehhhhhhh
Confidence 35556666666666666665544
No 385
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=57.02 E-value=4.1 Score=46.24 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=24.5
Q ss_pred ccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 61 q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
|..+|+.++..+ .......+|..|+.|+||||.+
T Consensus 6 Q~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 6 QRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 667777654433 3344456788999999999998
No 386
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=57.01 E-value=5.3 Score=46.16 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCCCceeeEEeecCCCCCCHHHHHHHHHHHHH
Q 002498 331 LGGNSKTVMIACISPADINAEESLNTLKYANR 362 (915)
Q Consensus 331 LgGns~t~~I~~vsp~~~~~~etl~TL~fa~r 362 (915)
+.-..+..+|||+.+.+.+ +..|.+|-+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 4556899999999998864 445666544
No 387
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=56.77 E-value=2.6e+02 Score=29.42 Aligned_cols=44 Identities=11% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 578 ~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
+.|.+++.+ |.+..+...++...++.++.++..++..+..+..+
T Consensus 31 Q~ird~~~~---l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 31 QAIRDMESE---LAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 44444445555555555555555555555554433
No 388
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.74 E-value=1.3e+02 Score=30.01 Aligned_cols=55 Identities=29% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~e 562 (915)
..|..++..|...+..++.++..+...-+ ..+|...|..++.++..+...+..+.
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666542111 23344444444444444444444443
No 389
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=56.73 E-value=4.5 Score=39.27 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467999999999987
No 390
>PRK04328 hypothetical protein; Provisional
Probab=56.71 E-value=7 Score=41.80 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=23.0
Q ss_pred chhhHHhhhcC---CCceEEeeccCCCCcccc
Q 002498 69 VAPLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (915)
Q Consensus 69 ~~~lv~~~l~G---~n~ti~ayGqtgSGKT~T 97 (915)
.-|-+|.++.| ..++++.+|++|||||..
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 34567888876 578889999999999754
No 391
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=56.67 E-value=4.7 Score=46.55 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=14.9
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345688999999999877
No 392
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=56.54 E-value=3.8e+02 Score=31.31 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 863 WEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIAL 908 (915)
Q Consensus 863 ~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~ 908 (915)
.+...-|......-.+++.++++++.+..++...+.+.++.+++|-
T Consensus 257 eel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 257 EELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333446666666666778888888888888888888888887763
No 393
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.53 E-value=3.2e+02 Score=30.34 Aligned_cols=203 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccchhhHhhhhcccCCccchhhhcccCCCChhHHH
Q 002498 407 VQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEE 486 (915)
Q Consensus 407 ~~~l~~~i~~L~~e~~~L~~eL~e~~~~~~~l~e~~~~~q~~~~~~~k~~eLe~~l~~~~~~d~~l~e~~~~~~~~~le~ 486 (915)
++.-.+.+..|..+.+..+.+-..+.-..+++.++...+ ..+..++........+.......... .+...+.+
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~L------Kkk~~el~~~~~~~~d~~~~~~~~~~-~La~lL~~ 76 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQAL------KKKYRELIQEAAGFGDPSIPPEKENK-NLAQLLSE 76 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhcccCCccCCcccchh-hHHHHHHH
Q ss_pred HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 487 VAKEWEHAL-WQNTMDKELNELNKRLEQKESEMKLFGD-------IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEI 558 (915)
Q Consensus 487 ee~~~~~~~-~q~~l~~el~eL~~~Le~kE~~~~kl~~-------~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l 558 (915)
..+++.... .-..|.+.+.++..++..+...+..... ......+..+-.++..+..++..|+.+...+..++
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEk 156 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEK 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhccCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 002498 559 ENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (915)
Q Consensus 559 ~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~~~~~~-------~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~ 627 (915)
..+..+.+ -|.-+..-|..+ |...... ..-|....+-+-+++..+++|..-++....+
T Consensus 157 eEl~~ERD--------~yk~K~~RLN~E---Ln~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 157 EELVTERD--------AYKCKAHRLNHE---LNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHH--------HHHHHHHHHHHH---HHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 394
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=56.35 E-value=6.3 Score=49.46 Aligned_cols=28 Identities=39% Similarity=0.514 Sum_probs=19.4
Q ss_pred hhHHhhhcC-CCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G-~n~ti~ayGqtgSGKT~Tm 98 (915)
.|...+-.| ++-.+|-||+.|+|||.+.
T Consensus 26 ~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A 54 (824)
T PRK07764 26 PLSTALDSGRINHAYLFSGPRGCGKTSSA 54 (824)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 343444444 4556788999999999875
No 395
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.21 E-value=2e+02 Score=27.97 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 577 e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
+.++.+++.++..+ +.....+.+.-+.....++.+++++..++..
T Consensus 79 ~~~~~~~ere~~~~---~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 79 KEQLEELERELASA---EEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555553322 2223334444445555555555555554443
No 396
>PF13173 AAA_14: AAA domain
Probab=56.17 E-value=5.2 Score=37.82 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.8
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
-.++-+|+.|+|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35778999999999988
No 397
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.97 E-value=92 Score=39.13 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=3.8
Q ss_pred CcccCCC
Q 002498 314 VHVPYRD 320 (915)
Q Consensus 314 ~~ipyrd 320 (915)
.+||...
T Consensus 353 ~~Vpa~~ 359 (771)
T TIGR01069 353 IPIPANE 359 (771)
T ss_pred CCccCCc
Confidence 3566654
No 398
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=55.90 E-value=3.3 Score=45.15 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.9
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|++-+|+..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999876
No 399
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=55.81 E-value=6.3 Score=43.62 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.3
Q ss_pred hhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+++..++.+. ..|+-.|+||||||++|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34455555433 45666799999999987
No 400
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.79 E-value=2.2e+02 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002498 640 RQWKASREKELLKLKKEGRKNEFERHKLE 668 (915)
Q Consensus 640 ~~~~~~~~kE~~~Lkk~~rk~~~~~~kle 668 (915)
--.+....+|+..+-+.-+-+++-+-.+.
T Consensus 654 ~~AErdFk~Elq~~~~~~~~L~~~iET~~ 682 (741)
T KOG4460|consen 654 SDAERDFKKELQLIPDQLRHLGNAIETVT 682 (741)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455566666555555555555444444
No 401
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=55.68 E-value=4.9 Score=40.76 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.2
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44567899999999988
No 402
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=55.61 E-value=6.7 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=23.3
Q ss_pred chhhHHhhhcC---CCceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~G---~n~ti~ayGqtgSGKT~Tm 98 (915)
.-|-+|.++.| ...++.-||++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567788875 3567788999999999876
No 403
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.53 E-value=6.3 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=18.8
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..++.|.| |++.++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 3445678887 456779999999875
No 404
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=55.51 E-value=5.4 Score=44.49 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=26.9
Q ss_pred eEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhh
Q 002498 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e 143 (915)
-|+-||.+||||||++ +.+|+... .-.|.++++|-|.=
T Consensus 32 ~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred eEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 4588999999999988 33454431 23578888888753
No 405
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.36 E-value=1.2e+02 Score=38.35 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=5.8
Q ss_pred CCCCCCHHHHHHHHH
Q 002498 344 SPADINAEESLNTLK 358 (915)
Q Consensus 344 sp~~~~~~etl~TL~ 358 (915)
.|....=.-+|.|+-
T Consensus 334 GpN~gGKTt~lktig 348 (782)
T PRK00409 334 GPNTGGKTVTLKTLG 348 (782)
T ss_pred CCCCCCcHHHHHHHH
Confidence 343333333344443
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=55.20 E-value=5.1 Score=38.88 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+.+|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998875
No 407
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=55.20 E-value=17 Score=43.50 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCcEEEcCCeEEEcCCHHHHHHHHHhccccc
Q 002498 181 SNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (915)
Q Consensus 181 ~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R 212 (915)
.+|.+++.++.+.+..--..++.+|..+.-.|
T Consensus 322 ~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 322 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred CCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 45667888888888777777888887765444
No 408
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=55.17 E-value=5.4 Score=40.13 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999863
No 409
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=55.13 E-value=6.1 Score=46.51 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.4
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
-..+-.||+|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34566899999999998
No 410
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=54.95 E-value=4.7 Score=46.41 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=20.0
Q ss_pred cCCCceEEeeccCCCCcccccCCCCCCCCccccHHH
Q 002498 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQ 113 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr 113 (915)
.|... +|.||+.|||||.+. ..-+||+|-
T Consensus 196 AGgHn-Ll~~GpPGtGKTmla------~Rl~~lLPp 224 (490)
T COG0606 196 AGGHN-LLLVGPPGTGKTMLA------SRLPGLLPP 224 (490)
T ss_pred hcCCc-EEEecCCCCchHHhh------hhhcccCCC
Confidence 35444 467999999999887 223566664
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.48 E-value=5.3 Score=46.28 Aligned_cols=17 Identities=47% Similarity=0.601 Sum_probs=14.6
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|+..|+||+|||+|+
T Consensus 222 ~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 222 GVVALVGPTGVGKTTTL 238 (424)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36667799999999998
No 412
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=54.46 E-value=6.5 Score=43.42 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.7
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999887
No 413
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=54.43 E-value=6.8 Score=40.45 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.5
Q ss_pred HhhhcCC---CceEEeeccCCCCccccc
Q 002498 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 74 ~~~l~G~---n~ti~ayGqtgSGKT~Tm 98 (915)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445442 567889999999999875
No 414
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.37 E-value=6.4 Score=51.14 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.6
Q ss_pred hHHhhhcCCCceEEeeccCCCCcccccC
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm~ 99 (915)
++..+-.|...++ ...+||||||+||.
T Consensus 425 i~~a~~~g~r~~L-l~maTGSGKT~tai 451 (1123)
T PRK11448 425 VEKAIVEGQREIL-LAMATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHhccCCeE-EEeCCCCCHHHHHH
Confidence 3444446765544 44899999999984
No 415
>PRK08118 topology modulation protein; Reviewed
Probab=54.27 E-value=5.7 Score=39.65 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+..|++|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999543
No 416
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=54.25 E-value=1.8e+02 Score=26.69 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 498 NTMDKELNELNKRLEQKESEMKLF 521 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl 521 (915)
..++..+..|+..|+........+
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGEL 35 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445556666666666555444444
No 417
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=54.11 E-value=8.5 Score=45.30 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.1
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 55789999999999988
No 418
>PHA02244 ATPase-like protein
Probab=54.09 E-value=7.2 Score=43.92 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=17.6
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+...+-.|.+ |+-+|+||+|||+..
T Consensus 111 ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 33333334555 555899999999876
No 419
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=53.62 E-value=5.9 Score=41.25 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999998
No 420
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.53 E-value=5.6 Score=46.61 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.8
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45677799999999998
No 421
>PRK07261 topology modulation protein; Provisional
Probab=53.49 E-value=6 Score=39.67 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+..|++|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999876
No 422
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=53.43 E-value=2e+02 Score=27.03 Aligned_cols=44 Identities=30% Similarity=0.309 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002498 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSI 621 (915)
Q Consensus 575 ~~e~~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~l 621 (915)
.++.-+++|++++..|..... .|++..+++..++..|+.+|..+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~---tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 67 SKEEAVDELEERKETLELRIK---TLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566665444444333 36666677777777777777664
No 423
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=53.43 E-value=7.1 Score=47.74 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.++.+|++|||||||+
T Consensus 175 ~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTL 190 (637)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4568999999999998
No 424
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=53.32 E-value=16 Score=46.36 Aligned_cols=131 Identities=16% Similarity=0.261 Sum_probs=0.0
Q ss_pred chhhHHhhhcCCC------ceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhh
Q 002498 69 VAPLVDGLFQGYN------ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILK 142 (915)
Q Consensus 69 ~~~lv~~~l~G~n------~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~ 142 (915)
+...|..+..|.+ ++++-+|+||+|||++. -.+...+| ......+++.+-+...
T Consensus 577 v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA-------------~~La~~l~-------~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 577 VSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA-------------KALAEFLF-------DDEDAMVRIDMSEYME 636 (852)
T ss_pred HHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH-------------HHHHHHhc-------CCCCcEEEEechhhcc
Q ss_pred hh-hhhccCCcccccccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccccccCCCCC
Q 002498 143 EE-VRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNN 221 (915)
Q Consensus 143 e~-v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~ 221 (915)
+. +..|+.+++....... .+.-.-.++..|..-+++.++...+..-..-++++|..|.-. .....
T Consensus 637 ~~~~~~l~g~~~g~~g~~~---------~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~-----d~~g~ 702 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEE---------GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLT-----DGQGR 702 (852)
T ss_pred cchHHHhcCCCCCccCccc---------ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCcee-----cCCCe
Q ss_pred CCCCcEEEEEEE
Q 002498 222 QSSRSHAIFTIT 233 (915)
Q Consensus 222 ~SSRSH~if~i~ 233 (915)
.-+-+++||.++
T Consensus 703 ~vd~rn~iiI~T 714 (852)
T TIGR03346 703 TVDFRNTVIIMT 714 (852)
T ss_pred EEecCCcEEEEe
No 425
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.25 E-value=2.8e+02 Score=31.52 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 002498 525 DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK----KKQESQVEL 600 (915)
Q Consensus 525 ~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L~----~~~~~~~~l 600 (915)
.+..++...++++.+|+.++..-++.-..+..++..+..+......|+ .+.|.-|..|..+..+|. +....-..+
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~-~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~ 81 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKL-QEKELELNRLQEENTQLNEERVREEATEKTL 81 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 601 LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS 645 (915)
Q Consensus 601 ~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~ 645 (915)
.+.....+..--.+..+|.++..++++.++.+=---...++.+..
T Consensus 82 t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~ 126 (459)
T KOG0288|consen 82 TVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIA 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
No 426
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.22 E-value=7.8 Score=45.46 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=19.8
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|..++.|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556778887 677789999999875
No 427
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.15 E-value=2.7e+02 Score=28.49 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002498 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN 671 (915)
Q Consensus 603 ~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~~~ 671 (915)
...+.+..+..|...|.+++.+...+ +..+....+||.+|+........++...+...
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~-----------~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKL-----------KEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443332 23333334677777777666666666665433
No 428
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=53.01 E-value=7.5 Score=41.06 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=27.6
Q ss_pred CceEEeeccCCCCccccc------CCCCC--CCCccccHHHHHHHHHHHHHh
Q 002498 81 NATVLAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm------~g~~~--~~~~~Glipr~~~~lF~~i~~ 124 (915)
+.+-..+||+|||||.|+ .|-+- -.-.+++=..++..||..+..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 344457999999999997 33221 011346667777788877665
No 429
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=52.82 E-value=1.5e+02 Score=32.48 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCCCCCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 684 EAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (915)
Q Consensus 684 E~~a~~k~Lke~le~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L 763 (915)
|+.+.+++++.... +-+...+++|+.++.+++++..+.=.++..|.+.+.+|..+
T Consensus 179 e~d~S~k~ik~~F~-------------------------~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrl 233 (302)
T PF07139_consen 179 EMDSSIKKIKQTFA-------------------------ELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRL 233 (302)
T ss_pred HHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888886654 45578889999999999999888888999999999998776
Q ss_pred Hh
Q 002498 764 KQ 765 (915)
Q Consensus 764 ~~ 765 (915)
-.
T Consensus 234 td 235 (302)
T PF07139_consen 234 TD 235 (302)
T ss_pred HH
Confidence 44
No 430
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.78 E-value=13 Score=41.30 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCCceEEeeccCCCCccccc
Q 002498 79 GYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 79 G~n~ti~ayGqtgSGKT~Tm 98 (915)
.-+.+|.-||+=|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56778999999999999988
No 431
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=52.71 E-value=6.4 Score=36.16 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.+...|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999988
No 432
>PRK00131 aroK shikimate kinase; Reviewed
Probab=52.61 E-value=6.3 Score=39.04 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.7
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|+.+|++|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999999884
No 433
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=52.54 E-value=6.2 Score=42.92 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.3
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|++.+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999877
No 434
>PF14282 FlxA: FlxA-like protein
Probab=52.45 E-value=74 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002498 534 GKKIMELEEEKRIVQQERDRLLA 556 (915)
Q Consensus 534 ~~ki~~Le~ei~~le~e~~~l~~ 556 (915)
+..|..|.++|..|+.++..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666677777766666666544
No 435
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.00 E-value=1.9e+02 Score=34.56 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002498 531 HHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (915)
Q Consensus 531 ~~~~~ki~~Le~ei~~le~e~~~l~~~l~~ 560 (915)
..|...+..|+..+..|+.++..|...+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee 447 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEE 447 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888887777666654
No 436
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=51.97 E-value=8.1 Score=47.60 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=20.2
Q ss_pred chhhHHhhhc-----CCCceEEeeccCCCCcccccC
Q 002498 69 VAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTMG 99 (915)
Q Consensus 69 ~~~lv~~~l~-----G~n~ti~ayGqtgSGKT~Tm~ 99 (915)
+..++.++.. |.+..|+. -+||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHH
Confidence 4456666665 34455544 489999999993
No 437
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=51.92 E-value=11 Score=43.85 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=19.7
Q ss_pred HhhhcCCCc------eEEeeccCCCCcccccCC
Q 002498 74 DGLFQGYNA------TVLAYGQTGSGKTYTMGT 100 (915)
Q Consensus 74 ~~~l~G~n~------ti~ayGqtgSGKT~Tm~g 100 (915)
..++.|+|. .|+-+|++|||||+.|-+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 345666433 467789999999999953
No 438
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=51.90 E-value=7.5 Score=43.22 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.4
Q ss_pred cCCCceEEeeccCCCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 599999999999999998766
No 439
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=51.60 E-value=6.6 Score=43.88 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=14.9
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 35778999999999988
No 440
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.54 E-value=1.2e+02 Score=30.30 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002498 536 KIMELEEEKRIVQQERDRLLAEIENLA 562 (915)
Q Consensus 536 ki~~Le~ei~~le~e~~~l~~~l~~~e 562 (915)
.|..|..++..+..+...+..++.++.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555544
No 441
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.42 E-value=2.7e+02 Score=28.01 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 002498 691 RLKELLE 697 (915)
Q Consensus 691 ~Lke~le 697 (915)
.|+-++|
T Consensus 142 ~lr~~iE 148 (177)
T PF07798_consen 142 NLRTEIE 148 (177)
T ss_pred HHHHHHH
Confidence 3555555
No 442
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=51.37 E-value=7 Score=43.02 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.1
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999887
No 443
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.25 E-value=6.4 Score=44.76 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.3
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|+..|++|+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 56788899999999999
No 444
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=51.19 E-value=10 Score=39.97 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred ccchhhHHhhhc-CC--CceEEeeccCCCCccccc
Q 002498 67 ECVAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 67 ~~~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (915)
.+.-|-+|.++. |+ .++++.+|++|||||+..
T Consensus 8 ~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 8 STGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred ecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 345566788876 43 677888999999998765
No 445
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=51.13 E-value=7.7 Score=46.43 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=30.5
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
+..+|+.+++... . +..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs~-----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQEE-----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcHH-----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 4567888886421 1 334444456667778889999999998765
No 446
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=51.08 E-value=6.9 Score=37.95 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
+|+.+|++|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5788999999999875
No 447
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=50.88 E-value=8.5 Score=42.69 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.4
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
+.-|+.+|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 456888999999999876
No 448
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=50.76 E-value=5.8 Score=39.15 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.9
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+..|++|||||+..
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 456799999998663
No 449
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=50.53 E-value=9.8 Score=39.85 Aligned_cols=28 Identities=43% Similarity=0.576 Sum_probs=21.7
Q ss_pred hhHHhhhc-C--CCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQ-G--YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~-G--~n~ti~ayGqtgSGKT~Tm 98 (915)
|-+|.++. | .+++++.+|++|||||...
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 45677774 4 4788999999999997654
No 450
>CHL00181 cbbX CbbX; Provisional
Probab=50.45 E-value=6.6 Score=42.99 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999887
No 451
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=50.39 E-value=8.4 Score=39.77 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred ccccchhhHHhh-hcCCCceEEe-eccCCCCccccc---CCCCCCC------CccccHHHHHHHHHHHHHhccccceeEE
Q 002498 65 FGECVAPLVDGL-FQGYNATVLA-YGQTGSGKTYTM---GTGLREG------FQTGLIPQVMNALFNKIETLRHQMEFQL 133 (915)
Q Consensus 65 y~~~~~~lv~~~-l~G~n~ti~a-yGqtgSGKT~Tm---~g~~~~~------~~~Glipr~~~~lF~~i~~~~~~~~~~v 133 (915)
|....+.+++++ |+=+.+-|.| .|+.|+|||++| .|..... .+.++-.....++-....-+.++....+
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laF 88 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAF 88 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccccc
Confidence 334445555544 3333343433 599999999998 3332211 1222222233344444444444555555
Q ss_pred EEeheeh
Q 002498 134 HVSFIEI 140 (915)
Q Consensus 134 ~vS~~EI 140 (915)
-++..||
T Consensus 89 pFtv~eV 95 (259)
T COG4559 89 PFTVQEV 95 (259)
T ss_pred ceEHHHH
Confidence 5555554
No 452
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.33 E-value=9.5 Score=44.93 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=20.0
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|..++.|.|+ ++..|||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 456678889874 56679999999764
No 453
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.21 E-value=6.9 Score=44.24 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=14.7
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|+..|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999999
No 454
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=50.20 E-value=5.3e+02 Score=32.29 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 498 NTMDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (915)
Q Consensus 498 ~~l~~el~eL~~~Le~kE~~~~kl~~~----~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~ 556 (915)
.=+++++..+..+|+..|..+..+... ++...-..+-+++.+|+.++..++.....+..
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQ 332 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888888877776532 22222233445677777777777665555543
No 455
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.00 E-value=7.5 Score=45.69 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=26.4
Q ss_pred EEEeceeecCCCCCccccccccchhhHHhhhcCC-CceEEeeccCCCCccccc
Q 002498 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 47 ~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~-n~ti~ayGqtgSGKT~Tm 98 (915)
.-+||.|++. +.+ +..+...+-.|. ...++-||++|+|||++.
T Consensus 10 P~~~~divGq-----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 10 PKTFSEVVGQ-----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCCHHHccCc-----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3467777753 222 333333333453 345788999999999886
No 456
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=49.93 E-value=7 Score=39.22 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.1
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+..|++|||||+++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999987
No 457
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=8.1 Score=40.82 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=29.0
Q ss_pred cCCCc--eEEeeccCCCCcccccC--------------CCCCCCCccccHHHHHHHHHHHHHh
Q 002498 78 QGYNA--TVLAYGQTGSGKTYTMG--------------TGLREGFQTGLIPQVMNALFNKIET 124 (915)
Q Consensus 78 ~G~n~--ti~ayGqtgSGKT~Tm~--------------g~~~~~~~~Glipr~~~~lF~~i~~ 124 (915)
-|+.- .|+.||++|+|||..-- |..--....|==.|.++.||.....
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 36543 58999999999997641 1000011224446888999976544
No 458
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=49.78 E-value=5.9e+02 Score=31.51 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHH
Q 002498 383 KLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNE 422 (915)
Q Consensus 383 ~L~~ei~~Lk~eL~~~~~~~~~~~~~~l~~~i~~L~~e~~ 422 (915)
.|+.++..|+.++.......+....-.|.+.|.+|..+.+
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d 472 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEID 472 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHH
Confidence 4677777888887632111100011235566666655443
No 459
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=49.72 E-value=8.4 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.9
Q ss_pred hcCCCceEEeeccCCCCccccc
Q 002498 77 FQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 77 l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..+-+.-++.||+.|||||.||
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3456777899999999999999
No 460
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.65 E-value=5.2e+02 Score=30.84 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 002498 675 KMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 675 ~~~l~rk~eE~~a~~k~Lke~le 697 (915)
..-|.++.++....+.+....|+
T Consensus 117 e~eLee~~~e~~~~~~~~~~~le 139 (514)
T TIGR03319 117 EKNLDEKEEELEELIAEQREELE 139 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555
No 461
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=49.52 E-value=5.5 Score=50.83 Aligned_cols=19 Identities=47% Similarity=0.698 Sum_probs=16.9
Q ss_pred CCceEEeeccCCCCccccc
Q 002498 80 YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (915)
-|+-.+.+|+||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4777788999999999999
No 462
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.21 E-value=5.1e+02 Score=30.60 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=17.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002498 598 VELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (915)
Q Consensus 598 ~~l~k~k~k~e~~~~~l~~ei~~lk~~ 624 (915)
.+|.-.++-.|.++..+.+.|..|-.+
T Consensus 476 DEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 476 DELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 336666666677776666666665544
No 463
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=49.21 E-value=7.7 Score=39.34 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998764
No 464
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.17 E-value=17 Score=42.65 Aligned_cols=19 Identities=47% Similarity=0.578 Sum_probs=15.1
Q ss_pred CCceEEeeccCCCCccccc
Q 002498 80 YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (915)
...-|+|+++||||||+..
T Consensus 172 ~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 172 EKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccceEEeccCCCcchhhh
Confidence 3445689999999997776
No 465
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=49.17 E-value=6.9 Score=46.46 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.1
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
..|+.||++|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35888999999999987
No 466
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.10 E-value=98 Score=34.09 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002498 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (915)
Q Consensus 600 l~k~k~k~e~~~~~l~~ei~~lk~~k~~L 628 (915)
.++++++.++++..++.+++.+|+...+|
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL 244 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEEL 244 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44555556666666666666666665555
No 467
>PRK11519 tyrosine kinase; Provisional
Probab=49.08 E-value=3.3e+02 Score=34.02 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002498 500 MDKELNELNKRLEQKESEMKLFGDI----DTEALRHHFGKKIMELEEEKRIVQQERDRLLA 556 (915)
Q Consensus 500 l~~el~eL~~~Le~kE~~~~kl~~~----~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~ 556 (915)
+++++.++..+|+..|..++.+... ++......+-+.+..|+.++..++.....+..
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~ 332 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISK 332 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777666531 22233333345566777777766655555543
No 468
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=49.01 E-value=7.1 Score=42.67 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
-|+-||++|||||++-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999876
No 469
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.78 E-value=7 Score=43.34 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCceEEeeccCCCCccccc
Q 002498 80 YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (915)
...+|+-.|+||||||++|
T Consensus 142 ~~~siii~G~t~sGKTt~l 160 (312)
T COG0630 142 ARKSIIICGGTASGKTTLL 160 (312)
T ss_pred cCCcEEEECCCCCCHHHHH
Confidence 3446778899999999999
No 470
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=48.70 E-value=11 Score=42.78 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=22.1
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+..+..|.+..||..++||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345677888878888999999999874
No 471
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=48.68 E-value=12 Score=39.10 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=23.0
Q ss_pred chhhHHhhhc-CC--CceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (915)
.-|-+|.++. |+ ...+.-||++|||||..+
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 4466788885 43 446778999999999877
No 472
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=48.68 E-value=12 Score=39.20 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=22.9
Q ss_pred chhhHHhhhc-CC--CceEEeeccCCCCccccc
Q 002498 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 69 ~~~lv~~~l~-G~--n~ti~ayGqtgSGKT~Tm 98 (915)
.-|-+|.++. |+ ...++.||++|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4466788885 43 446788999999999876
No 473
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=48.36 E-value=1.1e+02 Score=31.94 Aligned_cols=74 Identities=22% Similarity=0.194 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002498 840 FMGDAKNLLQYMFNVAAETRFQLWEKDTEIKEIKEQLNDLVALLKQSEAQRKELVKQQRMREQAVTIALASSAS 913 (915)
Q Consensus 840 ~l~eak~~l~~l~~~~~~~~~ql~~~~~~l~e~~~~~~~l~~~~~~~e~e~~~l~~~~~~~~~~~~~l~~~~~~ 913 (915)
+-++-|-....|..++-...|||-+.-.-..+++..+.+..-...+++.++++|.+..-+..-+|.=|...+++
T Consensus 10 ~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~As 83 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLAS 83 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHH
Confidence 34555667777888888888888887777777777777766666667777777776666666666555554443
No 474
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.34 E-value=7.9 Score=44.58 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.5
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
+..|...|++|+|||+|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346777899999999999
No 475
>PRK14531 adenylate kinase; Provisional
Probab=48.19 E-value=8.2 Score=39.06 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
-|+.+|++|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998874
No 476
>PRK10698 phage shock protein PspA; Provisional
Probab=48.11 E-value=3.5e+02 Score=28.37 Aligned_cols=44 Identities=11% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002498 579 KLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQK 625 (915)
Q Consensus 579 ~l~~le~~l~~L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k 625 (915)
-+.+++..+.++ .....+....+..++.++..+...+.....+-
T Consensus 32 ~i~em~~~l~~~---r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 32 MIQEMEDTLVEV---RSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555553333 33344455555555555555555555554443
No 477
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=48.10 E-value=6e+02 Score=31.10 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002498 590 LKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA 623 (915)
Q Consensus 590 L~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~ 623 (915)
+..-++....+.+.|.++-..+..|..++.+|+.
T Consensus 225 ~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 225 LESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333344444555555555555555555555553
No 478
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=47.92 E-value=8.4 Score=43.17 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=30.4
Q ss_pred EEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 48 f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
|.|..|.+ |+.+ ..-++-.+++..-+-|+..|.+|+|||..+
T Consensus 1 ~pf~~ivg-----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG-----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc-----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 56666664 2222 445666777777777889999999999887
No 479
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.88 E-value=3.7e+02 Score=28.61 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhHHHHHHHHHHHHHHHH
Q 002498 511 LEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILEL 590 (915)
Q Consensus 511 Le~kE~~~~kl~~~~~~~~~~~~~~ki~~Le~ei~~le~e~~~l~~~l~~~ee~~~~~~~Klk~~~e~~l~~le~~l~~L 590 (915)
++.......+.. ........++..+..+...+..+...+..++.+++ .....++..+..++.++..|
T Consensus 23 ~~~~~~~~~~~~-----~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~--------~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 23 LDQAQQVQQQWV-----QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLE--------VYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 002498 591 KKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ-----WKASREKELLKLKK 655 (915)
Q Consensus 591 ~~~~~~~~~l~k~k~k~e~~~~~l~~ei~~lk~~k~~L~~~~k~e~~~~~~-----~~~~~~kE~~~Lkk 655 (915)
++.... +...+...+-++.+|-+..+.|=. ....+.+-+..|+.
T Consensus 90 ~~qi~~---------------------~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~ 138 (251)
T PF11932_consen 90 EQQIEQ---------------------IEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRA 138 (251)
T ss_pred HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
No 480
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=47.62 E-value=42 Score=39.13 Aligned_cols=106 Identities=17% Similarity=0.231 Sum_probs=63.7
Q ss_pred cCCCceEEeeccCCCCcccccCCCCCCCCccccHHHHHHHHHHHHHhccccceeEEEEeheehhhhhhhh-ccCCccccc
Q 002498 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD-LLDSVSVSK 156 (915)
Q Consensus 78 ~G~n~ti~ayGqtgSGKT~Tm~g~~~~~~~~Glipr~~~~lF~~i~~~~~~~~~~v~vS~~EIy~e~v~D-LL~~~~~~~ 156 (915)
..-+++|+-+|.||||| -++.|+++..= ...+ .-.|.|.|-.|-.+-+-. |+......+
T Consensus 161 A~s~a~VLI~GESGtGK--------------ElvAr~IH~~S-----~R~~-~PFVavNcaAip~~l~ESELFGhekGAF 220 (464)
T COG2204 161 APSDASVLITGESGTGK--------------ELVARAIHQAS-----PRAK-GPFIAVNCAAIPENLLESELFGHEKGAF 220 (464)
T ss_pred hCCCCCEEEECCCCCcH--------------HHHHHHHHhhC-----cccC-CCceeeecccCCHHHHHHHhhcccccCc
Confidence 47899999999999999 25566666441 1112 234666666666555555 333222111
Q ss_pred ccccCCCCCccccCCCCCceEEecCCCcEEEcCCeEEEcCCHHHHHHHHHhcccccc
Q 002498 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRA 213 (915)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~ 213 (915)
+-.. .+..-.+.....|..++..+.+++..--.-++++|+.+.-.|.
T Consensus 221 TGA~----------~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rv 267 (464)
T COG2204 221 TGAI----------TRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERV 267 (464)
T ss_pred CCcc----------cccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEec
Confidence 1000 1122233444455678888888888877888999988765544
No 481
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=47.62 E-value=7.3 Score=44.61 Aligned_cols=16 Identities=50% Similarity=0.764 Sum_probs=12.4
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999877
No 482
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=47.42 E-value=14 Score=39.45 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.6
Q ss_pred CCceEEeeccCCCCccccc
Q 002498 80 YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 80 ~n~ti~ayGqtgSGKT~Tm 98 (915)
.-+||++.|-.|||||+.|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 3568999999999999877
No 483
>PRK06851 hypothetical protein; Provisional
Probab=47.36 E-value=14 Score=41.88 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=23.2
Q ss_pred hhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 71 ~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
.+.+.++.|.+-.++..|++|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 4455566788888899999999999998
No 484
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=47.29 E-value=6.9e+02 Score=31.51 Aligned_cols=63 Identities=29% Similarity=0.296 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002498 635 EAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA-------LNQRQKMVLQRKTEEAAIATKRLKELLE 697 (915)
Q Consensus 635 e~~~~~~~~~~~~kE~~~Lkk~~rk~~~~~~kle~-------~~~~q~~~l~rk~eE~~a~~k~Lke~le 697 (915)
+..+++..+...++|--.|+++..+...+-.+.+. .+....-+-.+-+++..+.++||.+...
T Consensus 1076 q~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~er~~rE~n~s~i~~~V~e~krL~~~~~ 1145 (1189)
T KOG1265|consen 1076 QTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAERERRKRELNSSNIKEFVEERKRLAEKQS 1145 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655544333222110 1122223333445555555666665554
No 485
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=47.11 E-value=7.9 Score=45.74 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999998866
No 486
>CHL00195 ycf46 Ycf46; Provisional
Probab=46.95 E-value=8.2 Score=45.50 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.5
Q ss_pred CceEEeeccCCCCccccc
Q 002498 81 NATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 81 n~ti~ayGqtgSGKT~Tm 98 (915)
.-.|+-||++|+|||++.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999876
No 487
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=46.65 E-value=9.6 Score=42.84 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=29.5
Q ss_pred eEEEeceeecCCCCCccccccccchhhHHhhhcCCCceEEeeccCCCCccccc
Q 002498 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 46 ~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
..|.|+.|-+. +++ ..-++..+.+..-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivGq-----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ-----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh-----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 37889988863 333 233444444433356789999999999988
No 488
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.54 E-value=8.5 Score=44.46 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=17.3
Q ss_pred hhcCCCceEEeeccCCCCcccccCC
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGT 100 (915)
Q Consensus 76 ~l~G~n~ti~ayGqtgSGKT~Tm~g 100 (915)
+..|.+. +|++|||||||+...+
T Consensus 108 i~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 108 ISGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred eecCCce--EEEccCCCcchHHHHH
Confidence 3445554 8899999999998743
No 489
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=46.51 E-value=18 Score=43.85 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=18.3
Q ss_pred ceeeEEeecCCCCCCHHHHHHHHHHHH
Q 002498 335 SKTVMIACISPADINAEESLNTLKYAN 361 (915)
Q Consensus 335 s~t~~I~~vsp~~~~~~etl~TL~fa~ 361 (915)
.++.+..||+|.......-|-.|=|.+
T Consensus 364 ~k~tiYl~i~pd~~~~~~pLi~lf~~q 390 (606)
T PRK13897 364 KKTTVYVGLTPDNLTRLQPLMQVFYQQ 390 (606)
T ss_pred CCeEEEEEEchhhChhHHHHHHHHHHH
Confidence 577788888998766555565565543
No 490
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=46.50 E-value=10 Score=46.34 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.6
Q ss_pred hHHhhhcCCCceEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~ti~ayGqtgSGKT~Tm 98 (915)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455677876 678889999999886
No 491
>PF13514 AAA_27: AAA domain
Probab=46.47 E-value=8.4e+02 Score=32.28 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002498 722 EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQ 768 (915)
Q Consensus 722 ~~~~~~~l~~Ele~~~~l~e~~~~~~~~~e~r~~l~~el~~L~~~~e 768 (915)
...+..++....+...........++...+....+..++..+...+.
T Consensus 786 ~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~ 832 (1111)
T PF13514_consen 786 LEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELA 832 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555555555566666666666666666666555443
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=46.46 E-value=22 Score=42.04 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred hhhHHhhhcC---CCceEEeeccCCCCccccc
Q 002498 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 70 ~~lv~~~l~G---~n~ti~ayGqtgSGKT~Tm 98 (915)
-|=+|.++.| .+.+++.+|++|||||..-
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 3456777764 4778999999999998654
No 493
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=46.33 E-value=8 Score=39.51 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 002498 84 VLAYGQTGSGKTYTM 98 (915)
Q Consensus 84 i~ayGqtgSGKT~Tm 98 (915)
|.-.|++|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999875
No 494
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.30 E-value=8.8 Score=47.35 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.9
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
.+|.-+|+||+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46777899999999998
No 495
>PHA02624 large T antigen; Provisional
Probab=46.28 E-value=11 Score=44.96 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=22.1
Q ss_pred hHHhhhcCCCc--eEEeeccCCCCccccc
Q 002498 72 LVDGLFQGYNA--TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 72 lv~~~l~G~n~--ti~ayGqtgSGKT~Tm 98 (915)
++..++.|... ||+-||+.|||||+..
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 36667778766 9999999999998765
No 496
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.26 E-value=8.8 Score=40.15 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=25.3
Q ss_pred EeceeecCCCCCccccccccchhhHHhhhc-C-CCceEEeeccCCCCccccc
Q 002498 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQ-G-YNATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 49 ~FD~Vf~~~~~~q~~vy~~~~~~lv~~~l~-G-~n~ti~ayGqtgSGKT~Tm 98 (915)
+||.+.| |+.+-.. ...++..+.. | .-..++-|||+|.|||+.-
T Consensus 22 ~L~efiG-----Q~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 22 SLDEFIG-----QEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp SCCCS-S------HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred CHHHccC-----cHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 5666664 3444433 4566666653 3 2335778999999997654
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=46.25 E-value=9.1 Score=38.37 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|+..|++|||||+.+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999866
No 498
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=46.23 E-value=9.5 Score=41.39 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.3
Q ss_pred ceEEeeccCCCCccccc
Q 002498 82 ATVLAYGQTGSGKTYTM 98 (915)
Q Consensus 82 ~ti~ayGqtgSGKT~Tm 98 (915)
.+|+..|++|+|||+|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666699999999998
No 499
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=9.2 Score=40.31 Aligned_cols=12 Identities=67% Similarity=1.149 Sum_probs=0.0
Q ss_pred EEeeccCCCCcc
Q 002498 84 VLAYGQTGSGKT 95 (915)
Q Consensus 84 i~ayGqtgSGKT 95 (915)
|+.|||+|+|||
T Consensus 208 vLmYGPPGTGKT 219 (424)
T KOG0652|consen 208 VLMYGPPGTGKT 219 (424)
T ss_pred eEeeCCCCCcHH
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.02 E-value=8.5 Score=42.78 Aligned_cols=16 Identities=44% Similarity=0.682 Sum_probs=0.0
Q ss_pred eEEeeccCCCCccccc
Q 002498 83 TVLAYGQTGSGKTYTM 98 (915)
Q Consensus 83 ti~ayGqtgSGKT~Tm 98 (915)
.|...|++|+|||+|+
T Consensus 116 vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 116 VILVVGVNGVGKTTTI 131 (318)
T ss_pred EEEEECCCCCcHHHHH
Done!