Query 002498
Match_columns 915
No_of_seqs 332 out of 2045
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 17:31:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002498.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1215-1219//hhsearch_pdb/002498hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 1.0 1 1 722.0 23.5 349 5-391 8-359 (365)
2 3b6u_A Kinesin-like protein KI 1.0 1 1 716.6 23.6 345 5-384 18-371 (372)
3 3bfn_A Kinesin-like protein KI 1.0 1 1 709.5 22.6 345 2-387 15-368 (388)
4 1goj_A Kinesin, kinesin heavy 1.0 1 1 708.0 25.8 341 3-381 1-345 (355)
5 2vvg_A Kinesin-2; motor protei 1.0 1 1 706.7 24.3 332 7-379 3-348 (350)
6 2owm_A Nckin3-434, related to 1.0 1 1 706.5 27.4 346 6-380 36-428 (443)
7 3cob_A Kinesin heavy chain-lik 1.0 1 1 706.0 26.9 348 7-397 4-356 (369)
8 1x88_A Kinesin-like protein KI 1.0 1 1 699.4 19.7 336 5-375 5-359 (359)
9 1t5c_A CENP-E protein, centrom 1.0 1 1 696.4 27.0 337 6-378 2-340 (349)
10 2zfi_A Kinesin-like protein KI 1.0 1 1 694.6 23.6 338 8-374 4-362 (366)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=1.00 E-value=1 Score=721.96 Aligned_cols=349 Identities=38% Similarity=0.634 Sum_probs=317.3
Q ss_pred CCCCCEEEEEECCCCCCCHHHCCCCEEEEEECC--CCCEEECCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 999971899980899960110399517997389--861245573788032566999886310121313358864248982
Q 002498 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHG--NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA 82 (915)
Q Consensus 5 ~~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~~~G~n~ 82 (915)
+..++|+|+|||||+++.|...++..++.+.++ ...+.+..+.|+||+||++.++ |++||+.++.|+|+++|+|||+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~-Q~~Vy~~~~~plv~~~l~G~n~ 86 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNAS-QEKVYNEAAKSIVTDVLAGYNG 86 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCC-HHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCCEEEECCEEEECCEEECCCCC-HHHHHHHHHHHHHHHHHCCCCE
T ss_conf 899995999994969946731599259994799877679989989867469647899-8999998630377998679824
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 18851347999540227889998766657999999999998401455158997110011116633137854465444578
Q 002498 83 TVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANG 162 (915)
Q Consensus 83 tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~~~~~~~~~~~ 162 (915)
||||||||||||||||+|+.+++..+|||||++++||..+......+.|.|+|||+|||||+|+|||++.
T Consensus 87 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~---------- 156 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS---------- 156 (365)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTT----------
T ss_pred EEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCC----------
T ss_conf 8983458999996488668887555773779999999999833689539999999999877212622587----------
Q ss_pred CCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCC
Q ss_conf 88864568999925775699947972875899089999999998312265313578898999737899999985302455
Q 002498 163 HAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (915)
Q Consensus 163 ~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~i~~~~~~~~ 242 (915)
...+.+++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|.+.....
T Consensus 157 ---------~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~- 226 (365)
T 2y65_A 157 ---------KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN- 226 (365)
T ss_dssp ---------CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-
T ss_pred ---------CCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCC-
T ss_conf ---------6772378879998784278899658799999999999864665235688878876399999999970588-
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 79999998888996469831123433787533356887643124356323048999999996000147899865689994
Q 002498 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSK 322 (915)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~~~~ipyrdSk 322 (915)
.....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++.+ .||||||||
T Consensus 227 -------------~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~hvPyRdSk 289 (365)
T 2y65_A 227 -------------QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK----THIPYRDSK 289 (365)
T ss_dssp -------------CCEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCC----SCCCGGGCH
T ss_pred -------------CCEEEEEEEEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCH
T ss_conf -------------878689999997999882012189522478998888889999989999852788----878663578
Q ss_pred CHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH-HHHHHHHHHH
Q ss_conf 30232101799850168863399889989899999999995132276532434433899-9999999999
Q 002498 323 LTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM-QKLRQQLKYL 391 (915)
Q Consensus 323 LTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~~i-~~L~~ei~~L 391 (915)
||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|.+|.++...++ .++++++..+
T Consensus 290 LT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 290 LTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp HHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8898776138996379999846752788999999999999721567541178899999999999999999
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=1.00 E-value=1 Score=716.61 Aligned_cols=345 Identities=44% Similarity=0.677 Sum_probs=313.2
Q ss_pred CCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEEC---------CEEEEECEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9999718999808999601103995179973898612455---------7378803256699988631012131335886
Q 002498 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (915)
Q Consensus 5 ~~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~ 75 (915)
+..++|+|+|||||+++.|...++..|+.+.+....+.+. .+.|+||+||++.++ |++||+.++.|+|++
T Consensus 18 ~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~-Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAK-QFELYDETFRPLVDS 96 (372)
T ss_dssp ---CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCC-HHHHHHHTHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEECCEEECCCCC-HHHHHHHHHHHHHHH
T ss_conf 8999839999869899355304996389995899879997788777778438876869688674-178988787777899
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCCCCC
Q ss_conf 42489821885134799954022788999876665799999999999840145515899711001111663313785446
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (915)
Q Consensus 76 ~~~G~n~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~~~~ 155 (915)
+|+|||+||||||||||||||||+|+.+++..+|||||++.+||..+.. .....|.|+|||+|||||.|+|||+|..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 173 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQ-- 173 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCT--
T ss_pred HHCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEEEEEEECCEEEECCCCCC--
T ss_conf 8679813588656899999875755899834488188999999998651-4577369999899996788899778977--
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 54445788886456899992577569994797287589908999999999831226531357889899973789999998
Q 002498 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (915)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~i~ 235 (915)
...+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|+
T Consensus 174 ----------------~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~ 237 (372)
T 3b6u_A 174 ----------------TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIE 237 (372)
T ss_dssp ----------------TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEE
T ss_pred ----------------CCCCEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf ----------------7773689879996752898899926799999999999976672545577877764299999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 53024557999999888899646983112343378753335688764312435632304899999999600014789986
Q 002498 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVH 315 (915)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~~~~ 315 (915)
+..... +.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++. .|
T Consensus 238 ~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~----~h 302 (372)
T 3b6u_A 238 CSEVGL-----------DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKS----TH 302 (372)
T ss_dssp EEC----------------CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC-------C
T ss_pred EEECCC-----------CCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC
T ss_conf 960477-----------887626788999997988765544575154314675650649999999999863898----87
Q ss_pred CCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 568999430232101799850168863399889989899999999995132276532434433899999
Q 002498 316 VPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKL 384 (915)
Q Consensus 316 ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~~i~~L 384 (915)
|||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|.++....+.+|
T Consensus 303 vPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~~~~~ 371 (372)
T 3b6u_A 303 IPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREF 371 (372)
T ss_dssp CCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----------
T ss_pred CCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHC
T ss_conf 866220889999986299954899999688524799999999999998645566625577579999851
No 3
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=709.46 Aligned_cols=345 Identities=35% Similarity=0.558 Sum_probs=304.9
Q ss_pred CCCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCC-EE-----ECCEEEEECEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999999971899980899960110399517997389861-24-----557378803256699988631012131335886
Q 002498 2 DTASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQ-VQ-----IGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (915)
Q Consensus 2 ~~~~~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~-~~-----~~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~ 75 (915)
.+.+..++|+|+|||||+++.|...++..|+.+..+... +. ...+.|+||+||++.++ |++||+.++.|+|++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~t-Q~~Vy~~~~~plv~~ 93 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERST-QQDIYAGSVQPILRH 93 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCC-HHHHHHHHTGGGHHH
T ss_pred CCCCCCCCEEEEEECCCCCHHHHCCCCCCEEEECCCCEEEEECCCCCCCEEEEECCEEECCCCC-HHHHHHHHHHHHHHH
T ss_conf 4568999979999779899145346998639955998599956888877059872369567897-757789988888887
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEEEEHEEHHHHHHHHCCCCC
Q ss_conf 42489821885134799954022788999876665799999999999840---145515899711001111663313785
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETL---RHQMEFQLHVSFIEILKEEVRDLLDSV 152 (915)
Q Consensus 76 ~~~G~n~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~---~~~~~~~v~vS~~EIy~e~i~DLL~~~ 152 (915)
+|+|||+||||||||||||||||+|+ ...+|||||++.+||..+... ...+.|.|.|||+|||||.|+|||+|.
T Consensus 94 ~l~G~N~tifAYGqTGSGKTyTM~G~---~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 94 LLEGQNASVLAYGPTGAGKTHTMLGS---PEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp HTTTCCEEEEEESCTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCS
T ss_pred HHCCCEEEEEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCEEEEHHCCC
T ss_conf 61696566761168889997686567---556641689999999999874233777148999999999888645600167
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 44654445788886456899992577569994797287589908999999999831226531357889899973789999
Q 002498 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (915)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i 232 (915)
. ..+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|
T Consensus 171 ~-------------------~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i 231 (388)
T 3bfn_A 171 S-------------------GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLV 231 (388)
T ss_dssp S-------------------CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEE
T ss_pred C-------------------CCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 8-------------------884599869999885360599958999999999997502652236477877777399999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99853024557999999888899646983112343378753335688764312435632304899999999600014789
Q 002498 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (915)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~ 312 (915)
+|.+..... ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++..
T Consensus 232 ~v~~~~~~~-------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~--- 295 (388)
T 3bfn_A 232 KVDQRERLA-------------PFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP--- 295 (388)
T ss_dssp EEEEEESST-------------TCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCS---
T ss_pred EEEEECCCC-------------CCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC---
T ss_conf 999822688-------------8733688999998987766554567551147776750639999999999966999---
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 986568999430232101799850168863399889989899999999995132276532434433899999999
Q 002498 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (915)
Q Consensus 313 ~~~ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~~i~~L~~e 387 (915)
||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|.++....+..++..
T Consensus 296 --hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l~~~k~~ 368 (388)
T 3bfn_A 296 --RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLS 368 (388)
T ss_dssp --CCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC--------------------
T ss_pred --CCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf --8867565889999986089962899999798500089999999999998517576735678998999887889
No 4
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=1.00 E-value=1 Score=707.96 Aligned_cols=341 Identities=40% Similarity=0.604 Sum_probs=308.2
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE---CCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99999971899980899960110399517997389861245---573788032566999886310121313358864248
Q 002498 3 TASENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (915)
Q Consensus 3 ~~~~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~~~G 79 (915)
|++..++|+|+|||||+++.|...++..|+.+.+....... ..+.|+||+||++.+ +|++||+.++.|+|+++|+|
T Consensus 1 ms~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~plv~~~l~G 79 (355)
T 1goj_A 1 MSSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSC-KQSDIFDFSIKPTVDDILNG 79 (355)
T ss_dssp -CCSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTC-CHHHHHHHHTHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCEEEECCCCCCCEEEECEEECCCC-CCHHHHHHHHHHHHHHHHCC
T ss_conf 99899986999988999957850699639998699849972689752776195989987-62799999999999998579
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCCCCCCCC
Q ss_conf 982188513479995402278899-9876665799999999999840145515899711001111663313785446544
Q 002498 80 YNATVLAYGQTGSGKTYTMGTGLR-EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (915)
Q Consensus 80 ~n~tilayG~tgSGKT~Tl~g~~~-~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~~~~~~~ 158 (915)
||+||||||||||||||||+|+.. +...+|||||++++||..+......+.|.|+|||+|||||+|+|||+|..
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----- 154 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN----- 154 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC-----
T ss_pred CCCEEEEECCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEECCCCCC-----
T ss_conf 822288889999986067515788776668706799999999987145685089999999997897788445766-----
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf 45788886456899992577569994797287589908999999999831226531357889899973789999998530
Q 002498 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (915)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~i~~~~ 238 (915)
..+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|.+..
T Consensus 155 --------------~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 220 (355)
T 1goj_A 155 --------------DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKN 220 (355)
T ss_dssp --------------CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEE
T ss_pred --------------CCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEC
T ss_conf --------------785268858999960687799579999999999999752472334478987776099999999960
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 24557999999888899646983112343378753335688764312435632304899999999600014789986568
Q 002498 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (915)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~~~~ipy 318 (915)
.. ......|+|+|||||||||++++++.|.+++|+.+||+||++||+||.+|++++. .||||
T Consensus 221 ~~--------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~----~hvPy 282 (355)
T 1goj_A 221 VE--------------TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKS----SHVPY 282 (355)
T ss_dssp TT--------------TTEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSC----SCCCG
T ss_pred CC--------------CCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCC
T ss_conf 68--------------8955665799998988774432466026678887651679999999999864899----98877
Q ss_pred CCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 999430232101799850168863399889989899999999995132276532434433899
Q 002498 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDM 381 (915)
Q Consensus 319 rdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~~i 381 (915)
||||||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|.++...++
T Consensus 283 RdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~~l 345 (355)
T 1goj_A 283 RDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345 (355)
T ss_dssp GGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCSSS
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCHHHH
T ss_conf 557999999997289976899999796302699999999999997236677556787999999
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=1.00 E-value=1 Score=706.67 Aligned_cols=332 Identities=42% Similarity=0.646 Sum_probs=303.5
Q ss_pred CCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE--------------CCEEEEECEEECCCCCCCCCCCCCCCHHH
Q ss_conf 9971899980899960110399517997389861245--------------57378803256699988631012131335
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------------GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (915)
Q Consensus 7 ~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~l 72 (915)
.++|+|+|||||+++.|...++..|+.+.+....+.+ ..+.|+||+||++.+ +|++||+.++.|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS-CNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTC-CHHHHHHHTTHHH
T ss_pred CCCEEEEEEECCCCHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEECCEEECCCC-CHHHHHHHHHHHH
T ss_conf 998699999097991332049953899849998899960455443344577852766788979976-1068998789999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCC
Q ss_conf 88642489821885134799954022788999876665799999999999840145515899711001111663313785
Q 002498 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (915)
Q Consensus 73 v~~~~~G~n~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~ 152 (915)
|+++|+|||+||||||||||||||||+|+. ..+|||||++++||..+........|.|.+||+|||||+|+|||++.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~---~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCS---SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEECCC---CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCEEEECCCCC
T ss_conf 999857885268864689999987853587---66755889999999999865368757999999999287888855677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 44654445788886456899992577569994797287589908999999999831226531357889899973789999
Q 002498 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (915)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i 232 (915)
..+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|
T Consensus 159 --------------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 218 (350)
T 2vvg_A 159 --------------------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMV 218 (350)
T ss_dssp --------------------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEE
T ss_pred --------------------CCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE
T ss_conf --------------------684256748998881587799749999999999999841460014578888765299999
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99853024557999999888899646983112343378753335688764312435632304899999999600014789
Q 002498 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (915)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~ 312 (915)
+|++..... .......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|++++
T Consensus 219 ~v~~~~~~~------------~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~---- 282 (350)
T 2vvg_A 219 RIECSEVIE------------NKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA---- 282 (350)
T ss_dssp EEEEEEC----------------CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC----
T ss_pred EEEEEECCC------------CCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 999950467------------8761788999999689887554456507788999887589999999999997389----
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 9865689994302321017998501688633998899898999999999951322765324344338
Q 002498 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS 379 (915)
Q Consensus 313 ~~~ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~ 379 (915)
.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||++|+|+|.+|.++...
T Consensus 283 -~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 283 -THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp -SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred -CCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCHHC
T ss_conf -988764558889989860899628999996884001899999999999985445666125782010
No 6
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=1.00 E-value=1 Score=706.54 Aligned_cols=346 Identities=41% Similarity=0.610 Sum_probs=299.0
Q ss_pred CCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEE--------------------ECCEEEEECEEECCC------CC
Q ss_conf 9997189998089996011039951799738986124--------------------557378803256699------98
Q 002498 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ--------------------IGTHSFTFDHVYGNG------GS 59 (915)
Q Consensus 6 ~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~--------------------~~~~~f~FD~Vf~~~------~~ 59 (915)
..++|+|+|||||++++|...++..++.+.+....+. ...+.|+||+|||+. .+
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a 115 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred CCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCEEECCCCCCCCCCC
T ss_conf 99894999993999968862699459997589862799558876543333321233667726852738278776776578
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEEE
Q ss_conf 8631012131335886424898218851347999540227889998766657999999999998401---4551589971
Q 002498 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR---HQMEFQLHVS 136 (915)
Q Consensus 60 ~q~~vy~~~~~~lv~~~~~G~n~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~---~~~~~~v~vS 136 (915)
+|++||+.++.|+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..|.... ..+.|.|+||
T Consensus 116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~---~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGT---PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCC---TTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 799998763246888863687427998678899998886468---77775379999999998876521367734999999
Q ss_pred HEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 10011116633137854465444578888645689999257756999479728758990899999999983122653135
Q 002498 137 FIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGS 216 (915)
Q Consensus 137 ~~EIy~e~i~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~ 216 (915)
|+|||||.|+|||+|.... .....+.|++++.+|++|.|++++.|.|++|++.+|..|..+|.+++
T Consensus 193 ~lEIYnE~i~DLL~~~~~~--------------~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~ 258 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPN--------------KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVAS 258 (443)
T ss_dssp EEEEETTEEEETTSCCCSS--------------CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCS
T ss_pred EEEEECCEEEECCCCCCCC--------------CCCCCCCEEECCCCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999889756856763457--------------86534430377999995268779982899999999999973378633
Q ss_pred CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHH
Q ss_conf 78898999737899999985302455799999988889964698311234337875333568876431243563230489
Q 002498 217 TNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLA 296 (915)
Q Consensus 217 t~~n~~sSRSH~if~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~a 296 (915)
|.||..|||||+||+|+|.+...... ........|+|+|||||||||++++++.|.|++|+.+||+||++
T Consensus 259 T~~N~~SSRSH~Ifti~v~~~~~~~~----------~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~a 328 (443)
T 2owm_A 259 TKMNDTSSRSHAVFTIMLKQIHHDLE----------TDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTT 328 (443)
T ss_dssp SSSSCBCTTEEEEEEEEEEEEC-----------------CCEEEEEEEEEECCCCCC--------------CCSSHHHHH
T ss_pred CCCCCCCCCCEEEEEEEEEEEECCCC----------CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCHHHHH
T ss_conf 75877667771999999998603567----------88740688779999798875356567766412110010578999
Q ss_pred HHHHHHHHHHHCCC-----------------CCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999996000147-----------------8998656899943023210179985016886339988998989999999
Q 002498 297 LGNVISALGDEKKR-----------------REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKY 359 (915)
Q Consensus 297 L~~vi~~L~~~~~~-----------------~~~~~ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~ 359 (915)
||+||.+|+++... +...||||||||||+||||+|||||+|+|||||||+ +++||++||+|
T Consensus 329 Lg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrf 406 (443)
T 2owm_A 329 LGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRY 406 (443)
T ss_dssp HHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHHHHH
T ss_conf 9999999860455555444322234333445677745574547688888862799708999981643--07899999999
Q ss_pred HHHHHCCCCCCCCCC-CCCHHH
Q ss_conf 999513227653243-443389
Q 002498 360 ANRARNIQNKPVVNR-DLISSD 380 (915)
Q Consensus 360 a~ra~~ik~kP~vn~-d~~~~~ 380 (915)
|+||++|+|+|++|. |+.+..
T Consensus 407 A~rak~I~n~~~vN~~d~~~~~ 428 (443)
T 2owm_A 407 ADQAKRIRTRAVVNQVDGVSAA 428 (443)
T ss_dssp HHHHTTCEECCCCCCC------
T ss_pred HHHHHHCCCCCEECCCCCCCHH
T ss_conf 9998544563335135776678
No 7
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=1.00 E-value=1 Score=705.95 Aligned_cols=348 Identities=35% Similarity=0.568 Sum_probs=310.4
Q ss_pred CCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE-----CCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9971899980899960110399517997389861245-----57378803256699988631012131335886424898
Q 002498 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN 81 (915)
Q Consensus 7 ~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~~~G~n 81 (915)
.++|+|+|||||+++.|...++..++.. .+...+.. ..+.|+||+||++.++ |++||+. +.|+|+++++|||
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~-Q~~Vy~~-~~~lv~~~l~G~n 80 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNAT-QDDVFED-TKYLVQSAVDGYN 80 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCC-HHHHHHT-TTHHHHHHHTTCE
T ss_pred CCCEEEEEECCCCCHHHCCCCCCEEEEC-CCCEEEEECCCCCCCEEEECCEEECCCCC-CCEEHHH-HHHHHHHHHCCCC
T ss_conf 9984999987999834546798379976-99679993378998268865989899997-3140221-3132576646971
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 21885134799954022788999876665799999999999840145515899711001111663313785446544457
Q 002498 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTAN 161 (915)
Q Consensus 82 ~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~~~~~~~~~~ 161 (915)
+||||||||||||||||+|+ ...+|||||++.+||..+......+.|.|++||+|||||.|+|||.|...
T Consensus 81 ~tifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------- 150 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGA---DSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA------- 150 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS-------
T ss_pred EEEEEECCCCCCCEEEECCC---CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEECCCCCCC-------
T ss_conf 59998789999883751179---98886258999999999874135752677899987707632345787556-------
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 88886456899992577569994797287589908999999999831226531357889899973789999998530245
Q 002498 162 GHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLH 241 (915)
Q Consensus 162 ~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~i~~~~~~~ 241 (915)
....+.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|++....
T Consensus 151 ---------~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~- 220 (369)
T 3cob_A 151 ---------KRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ- 220 (369)
T ss_dssp ---------CCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-
T ss_pred ---------CCCCEEEEECCCCCEECCCCEEEEECCHHHHHHHHHHHHHCCEEECCCCCCCCCCCEEEEEEEEEEECCC-
T ss_conf ---------7764278997999888059879980899999999998752552303447787776338999999985278-
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 57999999888899646983112343378753335688764312435632304899999999600014789986568999
Q 002498 242 SVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (915)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~~~~ipyrdS 321 (915)
......|+|+|||||||||++++++.|.+++|+.+||+||++||+||.+|+++. .|||||||
T Consensus 221 -------------~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-----~hvPyRdS 282 (369)
T 3cob_A 221 -------------TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-----QHIPYRNH 282 (369)
T ss_dssp -------------TCCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-----SCCCGGGC
T ss_pred -------------CCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCC
T ss_conf -------------772788899999688787544347630234778787788999999999986489-----96787477
Q ss_pred CCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4302321017998501688633998899898999999999951322765324344338999999999999999988
Q 002498 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCA 397 (915)
Q Consensus 322 kLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~~~i~~L~~ei~~Lk~eL~~ 397 (915)
|||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|.++ .++.+|+.++..++.++..
T Consensus 283 kLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--~ei~~L~~~l~~~~~~~~~ 356 (369)
T 3cob_A 283 KLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQAGR 356 (369)
T ss_dssp HHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--HHHHHHHHHTTCC------
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHHHHHHHCCC
T ss_conf 7788788762898527999994772002899999999999986545677415788--9999999999999976479
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=1.00 E-value=1 Score=699.42 Aligned_cols=336 Identities=40% Similarity=0.625 Sum_probs=300.3
Q ss_pred CCCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE---------CCEEEEECEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999971899980899960110399517997389861245---------57378803256699988631012131335886
Q 002498 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (915)
Q Consensus 5 ~~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~ 75 (915)
...++|+|+|||||++..|...++..++.+.+....+.+ ..+.|+||+||++.+ +|++||+.++.|+|++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGAST-KQIDVYRSVVCPILDE 83 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEECEEEEECCC-CHHHHHHHHHHHHHHH
T ss_conf 899985999990899925630499649997599857998378766776744875407985267-4537899998886898
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHH
Q ss_conf 42489821885134799954022788999--------8766657999999999998401455158997110011116633
Q 002498 76 LFQGYNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD 147 (915)
Q Consensus 76 ~~~G~n~tilayG~tgSGKT~Tl~g~~~~--------~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~D 147 (915)
+|+|||+||||||||||||||||+|+... ...+|||||++++||..+.. ....|.|+|||+|||||+|+|
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEE
T ss_pred HHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEEEEEEECCEEEE
T ss_conf 737982489984789998756885667766544444566687038999999987741--582599999999995761001
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 13785446544457888864568999925775699--9479728758990899999999983122653135788989997
Q 002498 148 LLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSN--GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSR 225 (915)
Q Consensus 148 LL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~--~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSR 225 (915)
||+|... ....+.+++++. ++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||
T Consensus 162 LL~~~~~----------------~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 225 (359)
T 1x88_A 162 LLNPSSD----------------VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 225 (359)
T ss_dssp TTCTTSC----------------TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHCCCCC----------------CCCCCEEEECCCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 2115655----------------566605886557789889828789984999999999998775146122547787777
Q ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 37899999985302455799999988889964698311234337875333568876431243563230489999999960
Q 002498 226 SHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (915)
Q Consensus 226 SH~if~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~ 305 (915)
||+||+|+|++..... +.......|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+
T Consensus 226 SH~if~i~i~~~~~~~-----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~ 294 (359)
T 1x88_A 226 SHSVFSVTIHMKETTI-----------DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALV 294 (359)
T ss_dssp CEEEEEEEEEEEEECT-----------TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEECCCC-----------CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6289999998743557-----------88713778899998189987354358863201777653078999999999986
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0014789986568999430232101799850168863399889989899999999995132276532434
Q 002498 306 DEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (915)
Q Consensus 306 ~~~~~~~~~~ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d 375 (915)
++. .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+||++|+|+|.+|..
T Consensus 295 ~~~-----~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~~ 359 (359)
T 1x88_A 295 ERT-----PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359 (359)
T ss_dssp TTC-----SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC----
T ss_pred CCC-----CCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 479-----97762256688999997589972999999789745689999999999998656676614779
No 9
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=696.38 Aligned_cols=337 Identities=42% Similarity=0.633 Sum_probs=299.3
Q ss_pred CCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE--CCEEEEECEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCE
Q ss_conf 99971899980899960110399517997389861245--5737880325669998863101213133588642489821
Q 002498 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (915)
Q Consensus 6 ~~~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~f~FD~Vf~~~~~~q~~vy~~~~~~lv~~~~~G~n~t 83 (915)
+.++|+|+|||||++..|...+...++.+......+.. +.+.|+||+||++.+ +|++||+.++.|+|+++|+|||+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~-tQ~~Vy~~~~~plv~~~l~G~n~t 80 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNE-TTKNVYEEIAAPIIDSAIQGYNGT 80 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTS-CHHHHHHHTTHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCHHHHCCCCCCEEEEECCCCEEEECCCCEEEECCEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9899799998898891564259974799958997699779982887897989999-989999999899999987488640
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEHEEHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 88513479995402278899987666579999999999984014551589971100111166331378544654445788
Q 002498 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (915)
Q Consensus 84 ilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~~~~~~~v~vS~~EIy~e~i~DLL~~~~~~~~~~~~~~ 163 (915)
|||||||||||||||+|+ ...+|||||++++||..+... .+..|.|+|||+|||||+|+|||++..
T Consensus 81 ifAYGqTGSGKTyTM~G~---~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~---------- 146 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMMGS---EDHLGVIPRAIHDIFQKIKKF-PDREFLLRVSYMEIYNETITDLLCGTQ---------- 146 (349)
T ss_dssp EEEEESTTSSHHHHHTBC---SSSBCHHHHHHHHHHHHGGGC-TTEEEEEEEEEEEEETTEEEESSSSSC----------
T ss_pred EEEECCCCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEEEEEEECCEEEECCCCCC----------
T ss_conf 562158999987687468---888745889999999999747-688679998899984877788667877----------
Q ss_pred CCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC
Q ss_conf 88645689999257756999479728758990899999999983122653135788989997378999999853024557
Q 002498 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (915)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~i~~~~~~~~~ 243 (915)
...++.|++++.++++|.|++++.|.|+++++.+|..|..+|.+++|.||..|||||+||+|+|++......
T Consensus 147 -------~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~- 218 (349)
T 1t5c_A 147 -------KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEP- 218 (349)
T ss_dssp -------TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC---
T ss_pred -------CCCCCEEEECCCCCEEECCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCC-
T ss_conf -------787746998899998744887998689999999999752334523365778888763999999998516887-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999988889964698311234337875333568876431243563230489999999960001478998656899943
Q 002498 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (915)
Q Consensus 244 ~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~~~~~~~ipyrdSkL 323 (915)
.........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++. ..|||||||||
T Consensus 219 --------~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~---~~hvPyRdSkL 287 (349)
T 1t5c_A 219 --------SNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV---GGFINYRDSKL 287 (349)
T ss_dssp -------------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCC---TTSSCGGGSHH
T ss_pred --------CCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHH
T ss_conf --------6767637899999997998753221478641113354776899999999999855687---77776556377
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 0232101799850168863399889989899999999995132276532434433
Q 002498 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLIS 378 (915)
Q Consensus 324 TrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~d~~~ 378 (915)
|+||||+|||||+|+|||||||+ +++||++||+||+||++|+|+|++|.++..
T Consensus 288 T~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 288 TRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp HHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 89999861899629999994777--789999999999997453667653667888
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=1.00 E-value=1 Score=694.56 Aligned_cols=338 Identities=40% Similarity=0.617 Sum_probs=297.9
Q ss_pred CCEEEEEECCCCCCCHHHCCCCEEEEEECCCCCEEE------CCEEEEECEEECCCC-------CCCCCCCCCCCHHHHH
Q ss_conf 971899980899960110399517997389861245------573788032566999-------8863101213133588
Q 002498 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI------GTHSFTFDHVYGNGG-------SPSSAMFGECVAPLVD 74 (915)
Q Consensus 8 ~~v~V~vRiRP~~~~e~~~~~~~~~~~~~~~~~~~~------~~~~f~FD~Vf~~~~-------~~q~~vy~~~~~~lv~ 74 (915)
++|+|+|||||++.+|...++..++.+.++...+.. ..+.|+||+||++.. ++|++||+.++.|+|+
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~ 83 (366)
T 2zfi_A 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ 83 (366)
T ss_dssp CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHH
T ss_pred CCCEEEEECCCCCHHHCCCCCCEEEEECCCCEEEECCCCCCCCCEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98089998899983551579976999779967995367777776278624696057666544567699999999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEEEHEEHHHHHHHHCCCCCC
Q ss_conf 6424898218851347999540227889998766657999999999998401-455158997110011116633137854
Q 002498 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVS 153 (915)
Q Consensus 75 ~~~~G~n~tilayG~tgSGKT~Tl~g~~~~~~~~Gii~r~~~~LF~~i~~~~-~~~~~~v~vS~~EIy~e~i~DLL~~~~ 153 (915)
++|+|||+||||||||||||||||+|+.. ...+|||||++.+||..+.... ..+.|.|+|||+|||||+|+|||+|..
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm~G~~~-~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTMMGKQE-KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBCSG-GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHCCCEEEEEEECCCCCCCCEEEECCCC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEECCCCCC
T ss_conf 97469714899858999988458647876-57786699999999998764026770699999999960884789123556
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 46544457888864568999925775699947972875899089999999998312265313578898999737899999
Q 002498 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (915)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~if~i~ 233 (915)
...+.|++++.+|++|.|++++.|.|++|++.+|..|..+|.+++|.||..|||||+||+|+
T Consensus 163 ------------------~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~ 224 (366)
T 2zfi_A 163 ------------------KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNII 224 (366)
T ss_dssp ------------------CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEE
T ss_pred ------------------CCCCEEEECCCCCEEEECCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf ------------------78856888699987976989999779999999999976224611265777777645999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCC----
Q ss_conf 9853024557999999888899646983112343378753335688764312435632304899999999600014----
Q 002498 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK---- 309 (915)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~lVDLAGsEr~~~~~~~g~~~~E~~~iN~sL~aL~~vi~~L~~~~~---- 309 (915)
|.+...... ........|+|+|||||||||++++++.|.|++|+.+||+||++||+||.+|+++..
T Consensus 225 v~~~~~~~~----------~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~ 294 (366)
T 2zfi_A 225 FTQKRHDAE----------TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294 (366)
T ss_dssp EEEEEECTT----------TTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEECCCCC----------CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999604677----------8754136768999968988645546787630044656767899999999998712345433
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf ---78998656899943023210179985016886339988998989999999999513227653243
Q 002498 310 ---RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNR 374 (915)
Q Consensus 310 ---~~~~~~ipyrdSkLTrlLq~sLggns~t~~I~~vsp~~~~~~eTl~TL~~a~ra~~ik~kP~vn~ 374 (915)
.++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+||++|+|+|.++.
T Consensus 295 ~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp ---------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 33456677464333288999998728996099999968873349999999999999840558888999
Done!