Query 002500
Match_columns 915
No_of_seqs 242 out of 360
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 01:11:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 2E-175 5E-180 1498.7 28.7 646 191-913 227-885 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 4.6E-21 9.9E-26 179.5 2.6 88 191-278 5-105 (105)
3 PF08879 WRC: WRC; InterPro: 99.6 9.5E-16 2.1E-20 124.2 2.5 42 17-58 1-42 (46)
4 PF02373 JmjC: JmjC domain, hy 99.5 1.5E-14 3.1E-19 133.1 4.2 83 762-860 30-114 (114)
5 PF13621 Cupin_8: Cupin-like d 98.9 2.1E-10 4.6E-15 117.7 0.1 40 825-864 207-249 (251)
6 smart00558 JmjC A domain famil 96.9 0.00054 1.2E-08 57.2 2.4 54 596-667 3-56 (57)
7 KOG2131 Uncharacterized conser 96.0 0.0079 1.7E-07 67.7 4.8 61 821-881 262-323 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 95.1 0.011 2.5E-07 47.8 1.8 30 320-349 1-31 (43)
9 cd02339 ZZ_Mind_bomb Zinc fing 93.6 0.039 8.4E-07 45.3 1.7 30 320-349 1-32 (45)
10 cd02335 ZZ_ADA2 Zinc finger, Z 93.5 0.041 8.9E-07 45.5 1.6 30 321-350 2-33 (49)
11 cd02249 ZZ Zinc finger, ZZ typ 93.3 0.046 1E-06 44.5 1.7 32 321-352 2-34 (46)
12 COG1917 Uncharacterized conser 92.8 0.065 1.4E-06 51.5 2.2 55 799-858 59-115 (131)
13 PF07883 Cupin_2: Cupin domain 92.3 0.062 1.3E-06 45.4 1.2 26 828-853 38-63 (71)
14 KOG2130 Phosphatidylserine-spe 92.0 0.097 2.1E-06 58.4 2.6 42 826-867 262-303 (407)
15 cd02344 ZZ_HERC2 Zinc finger, 90.4 0.16 3.4E-06 41.9 1.7 31 320-350 1-33 (45)
16 PF00569 ZZ: Zinc finger, ZZ t 90.3 0.13 2.8E-06 42.1 1.1 35 318-352 3-39 (46)
17 COG0662 {ManC} Mannose-6-phosp 90.0 0.22 4.8E-06 48.3 2.7 41 826-866 74-114 (127)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 89.1 0.22 4.8E-06 41.5 1.6 31 321-351 2-36 (48)
19 smart00291 ZnF_ZZ Zinc-binding 88.7 0.25 5.3E-06 40.0 1.6 36 319-354 4-40 (44)
20 cd02345 ZZ_dah Zinc finger, ZZ 87.7 0.3 6.6E-06 40.6 1.6 33 320-352 1-35 (49)
21 cd02338 ZZ_PCMF_like Zinc fing 87.0 0.32 7E-06 40.4 1.4 31 320-350 1-33 (49)
22 cd02337 ZZ_CBP Zinc finger, ZZ 86.3 0.39 8.4E-06 38.8 1.4 29 321-350 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.5 0.43 9.3E-06 52.0 1.7 31 822-852 213-243 (260)
24 PRK09943 DNA-binding transcrip 82.2 1.1 2.4E-05 45.8 3.1 59 800-864 125-183 (185)
25 KOG1356 Putative transcription 81.4 0.78 1.7E-05 56.8 1.8 75 271-351 185-261 (889)
26 COG4101 Predicted mannose-6-ph 79.8 0.84 1.8E-05 45.0 1.1 26 827-852 88-113 (142)
27 cd02334 ZZ_dystrophin Zinc fin 79.0 1.2 2.6E-05 37.4 1.6 34 320-353 1-36 (49)
28 PRK13290 ectC L-ectoine syntha 78.1 1.6 3.4E-05 42.9 2.5 36 827-864 75-110 (125)
29 cd00162 RING RING-finger (Real 77.7 1.8 3.9E-05 32.8 2.2 42 196-244 2-43 (45)
30 PF07649 C1_3: C1-like domain; 76.2 1.3 2.8E-05 33.1 1.0 27 321-347 2-29 (30)
31 PHA02926 zinc finger-like prot 75.7 1.2 2.5E-05 48.2 0.9 33 212-245 196-228 (242)
32 PF01050 MannoseP_isomer: Mann 75.6 1.7 3.7E-05 44.1 2.0 22 832-853 107-128 (151)
33 TIGR00218 manA mannose-6-phosp 75.3 1.5 3.2E-05 48.7 1.6 15 832-846 156-170 (302)
34 cd02343 ZZ_EF Zinc finger, ZZ 75.3 1.8 3.9E-05 36.4 1.7 31 320-350 1-32 (48)
35 PRK15131 mannose-6-phosphate i 72.9 1.8 4E-05 50.0 1.6 18 829-846 239-256 (389)
36 PF13639 zf-RING_2: Ring finge 72.1 1.5 3.2E-05 34.9 0.5 30 206-243 15-44 (44)
37 PRK04190 glucose-6-phosphate i 71.2 3 6.5E-05 43.9 2.6 42 826-868 119-160 (191)
38 PHA02929 N1R/p28-like protein; 66.9 3.8 8.2E-05 44.7 2.3 47 192-245 173-225 (238)
39 COG1482 ManA Phosphomannose is 66.4 3 6.6E-05 47.0 1.6 19 829-847 160-178 (312)
40 KOG0320 Predicted E3 ubiquitin 65.6 10 0.00022 40.0 5.0 47 191-244 129-175 (187)
41 smart00184 RING Ring finger. E 64.7 4.3 9.4E-05 29.5 1.6 26 211-242 14-39 (39)
42 PF13920 zf-C3HC4_3: Zinc fing 63.7 4.2 9.1E-05 33.3 1.5 43 194-244 3-45 (50)
43 PLN02288 mannose-6-phosphate i 63.4 3.6 7.9E-05 47.7 1.5 17 830-846 254-270 (394)
44 PF00190 Cupin_1: Cupin; Inte 62.5 7 0.00015 38.4 3.1 38 828-865 81-125 (144)
45 KOG0317 Predicted E3 ubiquitin 62.5 6.6 0.00014 43.9 3.2 47 191-246 237-283 (293)
46 PLN03208 E3 ubiquitin-protein 62.2 7.3 0.00016 41.4 3.3 51 192-245 17-77 (193)
47 PF13923 zf-C3HC4_2: Zinc fing 59.5 7 0.00015 30.5 2.0 29 207-242 11-39 (39)
48 KOG4582 Uncharacterized conser 59.0 4.9 0.00011 44.6 1.5 32 319-350 152-185 (278)
49 cd02342 ZZ_UBA_plant Zinc fing 58.2 6.5 0.00014 32.5 1.7 31 320-350 1-33 (43)
50 PF15227 zf-C3HC4_4: zinc fing 56.8 5.6 0.00012 32.0 1.1 28 212-242 15-42 (42)
51 KOG0823 Predicted E3 ubiquitin 55.7 6.9 0.00015 42.5 1.9 47 192-244 46-92 (230)
52 PF13248 zf-ribbon_3: zinc-rib 55.7 5.8 0.00012 28.9 0.9 25 319-343 2-26 (26)
53 smart00154 ZnF_AN1 AN1-like Zi 54.9 7.7 0.00017 31.0 1.6 30 196-229 1-30 (39)
54 TIGR00599 rad18 DNA repair pro 54.8 9 0.0002 44.7 2.8 47 192-247 25-71 (397)
55 PRK15460 cpsB mannose-1-phosph 54.7 7.6 0.00016 46.2 2.2 30 823-852 420-449 (478)
56 PF14634 zf-RING_5: zinc-RING 54.0 11 0.00024 30.2 2.4 42 196-244 2-44 (44)
57 PF02041 Auxin_BP: Auxin bindi 52.8 8.6 0.00019 39.6 1.9 41 806-851 75-115 (167)
58 TIGR01479 GMP_PMI mannose-1-ph 52.7 9.6 0.00021 45.0 2.6 30 824-853 412-441 (468)
59 PF13240 zinc_ribbon_2: zinc-r 52.1 7.2 0.00016 28.0 0.9 23 321-343 1-23 (23)
60 PF08007 Cupin_4: Cupin superf 51.4 14 0.00031 41.4 3.6 41 827-867 176-216 (319)
61 PF00097 zf-C3HC4: Zinc finger 51.1 7 0.00015 30.3 0.8 29 209-242 13-41 (41)
62 smart00835 Cupin_1 Cupin. This 49.9 13 0.00029 36.6 2.7 58 800-857 47-107 (146)
63 TIGR03404 bicupin_oxalic bicup 48.8 13 0.00028 42.8 2.8 81 800-882 262-343 (367)
64 KOG2508 Predicted phospholipas 48.8 19 0.0004 41.7 3.9 38 489-526 34-74 (437)
65 KOG0978 E3 ubiquitin ligase in 48.7 4.4 9.5E-05 50.0 -1.0 44 192-243 642-685 (698)
66 PTZ00194 60S ribosomal protein 48.3 7.6 0.00016 39.5 0.8 43 800-844 18-60 (143)
67 smart00249 PHD PHD zinc finger 48.3 13 0.00029 28.5 2.0 46 195-242 1-47 (47)
68 TIGR03214 ura-cupin putative a 45.0 17 0.00037 39.8 2.9 47 801-852 77-123 (260)
69 KOG2177 Predicted E3 ubiquitin 44.1 26 0.00056 36.0 3.9 43 192-243 12-54 (386)
70 PF00628 PHD: PHD-finger; Int 40.7 3.8 8.3E-05 33.3 -2.2 48 195-243 1-49 (51)
71 PF01238 PMI_typeI: Phosphoman 39.8 10 0.00022 43.6 0.2 17 830-846 253-269 (373)
72 PF12678 zf-rbx1: RING-H2 zinc 39.8 24 0.00053 31.5 2.5 43 194-243 31-73 (73)
73 KOG0457 Histone acetyltransfer 39.4 12 0.00025 44.0 0.6 32 318-349 13-46 (438)
74 COG5114 Histone acetyltransfer 39.4 8.4 0.00018 43.6 -0.5 30 320-349 6-37 (432)
75 PF12861 zf-Apc11: Anaphase-pr 37.6 27 0.0006 32.8 2.6 48 192-244 31-79 (85)
76 KOG3899 Uncharacterized conser 37.0 13 0.00028 41.7 0.5 44 207-255 317-369 (381)
77 PF02938 GAD: GAD domain; Int 36.8 12 0.00025 34.9 0.1 70 769-849 23-93 (95)
78 PRK01191 rpl24p 50S ribosomal 35.9 15 0.00033 36.4 0.7 41 801-843 18-58 (120)
79 TIGR00570 cdk7 CDK-activating 35.3 35 0.00076 38.8 3.4 43 194-244 4-51 (309)
80 PF10571 UPF0547: Uncharacteri 34.7 24 0.00052 26.2 1.4 23 321-343 2-24 (26)
81 COG5432 RAD18 RING-finger-cont 34.6 21 0.00046 40.1 1.6 43 192-244 24-67 (391)
82 PRK10371 DNA-binding transcrip 34.6 30 0.00064 38.3 2.7 34 821-854 58-91 (302)
83 KOG3905 Dynein light intermedi 33.4 19 0.0004 41.5 0.9 23 768-790 243-265 (473)
84 PRK13264 3-hydroxyanthranilate 32.4 33 0.00072 36.1 2.5 63 805-869 55-118 (177)
85 KOG1280 Uncharacterized conser 32.3 19 0.00042 41.3 0.8 34 316-349 5-40 (381)
86 TIGR03037 anthran_nbaC 3-hydro 32.1 33 0.00072 35.6 2.4 45 826-870 69-113 (159)
87 PRK11171 hypothetical protein; 30.0 40 0.00086 37.1 2.7 29 824-852 98-126 (266)
88 PRK04023 DNA polymerase II lar 29.9 27 0.00059 45.0 1.6 30 191-222 624-657 (1121)
89 PF06844 DUF1244: Protein of u 29.8 22 0.00047 32.0 0.6 13 217-229 11-23 (68)
90 PF09567 RE_MamI: MamI restric 29.7 23 0.0005 39.2 0.9 22 320-341 83-104 (314)
91 PRK11171 hypothetical protein; 29.5 36 0.00078 37.4 2.3 32 821-852 217-248 (266)
92 cd00065 FYVE FYVE domain; Zinc 29.1 31 0.00067 28.6 1.4 34 194-228 3-38 (57)
93 PF05899 Cupin_3: Protein of u 29.0 30 0.00064 30.8 1.3 17 828-844 45-61 (74)
94 smart00504 Ubox Modified RING 29.0 52 0.0011 27.5 2.7 42 195-245 3-44 (63)
95 KOG2107 Uncharacterized conser 28.8 51 0.0011 34.6 3.1 56 774-846 79-135 (179)
96 PF10122 Mu-like_Com: Mu-like 28.7 23 0.0005 30.4 0.5 30 207-245 4-33 (51)
97 PTZ00303 phosphatidylinositol 28.3 30 0.00064 43.5 1.5 33 193-226 460-499 (1374)
98 PF15446 zf-PHD-like: PHD/FYVE 27.3 48 0.001 34.8 2.6 64 195-259 1-85 (175)
99 TIGR03404 bicupin_oxalic bicup 27.1 59 0.0013 37.6 3.6 53 825-881 108-165 (367)
100 KOG2583 Ubiquinol cytochrome c 26.5 41 0.00089 39.5 2.2 44 460-504 160-206 (429)
101 PF12852 Cupin_6: Cupin 26.2 39 0.00084 34.4 1.7 43 799-851 37-79 (186)
102 COG0184 RpsO Ribosomal protein 26.0 64 0.0014 30.6 3.0 58 809-892 2-59 (89)
103 PF13216 DUF4024: Protein of u 25.6 30 0.00065 26.9 0.6 21 646-666 3-23 (35)
104 PF05290 Baculo_IE-1: Baculovi 25.4 86 0.0019 31.9 3.9 44 313-356 73-119 (140)
105 PF02311 AraC_binding: AraC-li 25.3 50 0.0011 30.2 2.2 46 822-868 36-83 (136)
106 COG5219 Uncharacterized conser 24.8 28 0.00061 44.5 0.5 33 207-244 1488-1520(1525)
107 TIGR01080 rplX_A_E ribosomal p 24.8 41 0.00089 33.1 1.5 44 800-845 13-56 (114)
108 KOG1814 Predicted E3 ubiquitin 24.2 61 0.0013 38.2 3.0 24 205-229 291-314 (445)
109 PF14446 Prok-RING_1: Prokaryo 23.9 32 0.0007 29.8 0.5 24 315-341 17-44 (54)
110 PRK14892 putative transcriptio 23.9 47 0.001 31.9 1.7 29 314-342 16-51 (99)
111 PRK15457 ethanolamine utilizat 23.5 48 0.001 36.3 1.9 46 800-850 171-216 (233)
112 TIGR02297 HpaA 4-hydroxyphenyl 23.5 61 0.0013 34.8 2.7 32 821-852 56-87 (287)
113 KOG1039 Predicted E3 ubiquitin 22.7 34 0.00074 39.4 0.7 32 212-244 186-218 (344)
114 COG3492 Uncharacterized protei 22.0 32 0.00069 32.8 0.2 14 217-230 42-55 (104)
115 COG5574 PEX10 RING-finger-cont 21.9 47 0.001 37.1 1.4 47 192-246 214-261 (271)
116 PF01363 FYVE: FYVE zinc finge 21.9 32 0.00069 29.8 0.2 37 191-228 7-45 (69)
117 COG5540 RING-finger-containing 21.7 66 0.0014 36.7 2.5 49 190-244 320-369 (374)
118 PF13891 zf-C3Hc3H: Potential 21.5 49 0.0011 29.1 1.2 22 32-53 8-29 (65)
119 PF03107 C1_2: C1 domain; Int 21.5 45 0.00098 25.1 0.9 26 322-347 3-29 (30)
120 PF10272 Tmpp129: Putative tra 21.4 44 0.00096 38.7 1.2 53 192-245 270-349 (358)
121 PRK13503 transcriptional activ 21.1 51 0.0011 35.1 1.5 31 822-852 48-78 (278)
122 PF14369 zf-RING_3: zinc-finge 21.0 42 0.00091 26.4 0.6 21 194-214 3-28 (35)
123 PRK12380 hydrogenase nickel in 20.7 50 0.0011 32.1 1.2 22 319-340 70-93 (113)
124 KOG0311 Predicted E3 ubiquitin 20.7 44 0.00095 38.6 1.0 58 192-256 42-99 (381)
125 PF06249 EutQ: Ethanolamine ut 20.7 73 0.0016 32.9 2.4 21 824-844 110-130 (152)
126 smart00064 FYVE Protein presen 20.3 54 0.0012 28.3 1.2 35 193-228 10-46 (68)
127 PRK13501 transcriptional activ 20.3 59 0.0013 35.2 1.8 29 822-850 51-79 (290)
128 PF02318 FYVE_2: FYVE-type zin 20.1 18 0.00039 35.1 -1.9 51 186-242 47-100 (118)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=2.2e-175 Score=1498.73 Aligned_cols=646 Identities=30% Similarity=0.502 Sum_probs=550.4
Q ss_pred cCCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCccccccccccCccccccccc----CC
Q 002500 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIRE----IP 266 (915)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g~~k~~~~e----~~ 266 (915)
-...+||||.+..+..+-+|+.|+.+ ||.+|++.||+....++++.+|++|+..|||..|....++++|.+.. .+
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~ 305 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD 305 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence 46789999999888889999999965 99999999999988999999999999999999999999999998876 66
Q ss_pred cccchhhhH--HHHHhhhhhhhhhhhhhhhhhhhhhhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcc
Q 002500 267 VLDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYD 342 (915)
Q Consensus 267 ~~~k~~~~~--YLl~~lLP~Lkqi~~EQ~~E~EiEAkIqG~~i~--i~~a~~~~DERvyCDnCkTSIvD~HRSC~~Csyd 342 (915)
..+++.++. |+|..++|+|+.++..|..+.+.||+|||.... ...+..+++|++|||+|.|||.|+||+||+|||.
T Consensus 306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~ 385 (889)
T KOG1356|consen 306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYA 385 (889)
T ss_pred HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCcccc
Confidence 777778887 999999999999999999999999999998533 3556777799999999999999999999999999
Q ss_pred hhhhhhHHhhhcccCCCCcccc-ccccc--c-cccchhhhhhhhhhhhccccCCCCcccCCCCCccCCCCCCCCCCCCcc
Q 002500 343 LCLSCCQDLREASTSVGKEEFS-ENDRI--Q-DTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSL 418 (915)
Q Consensus 343 LCL~CC~ELR~g~~~~g~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsIpCppke~ggCg~~~L 418 (915)
+||.||++||.|.+....+... +..+. . +.....+....+. ..... +. ++++|+|.|-|..++||+...|
T Consensus 386 ~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~---~~~~~-~~--~~~ng~~r~l~~~~~g~~~~~l 459 (889)
T KOG1356|consen 386 ICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSV---SVDEP-SS--ANENGSLRDLLLSLAGCLDRGL 459 (889)
T ss_pred ccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCC---CCCCC-cc--cccccchhhcccccCccchhhh
Confidence 9999999999998876653221 11110 0 0000001000000 00001 12 8899999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhcCCcccCcCc-cccCCCCccccccccccCCCCCceecCCccccCchhHHHHHHhhhc
Q 002500 419 NLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVK 497 (915)
Q Consensus 419 ~L~~if~~~~i~~L~~~aee~~~~c~~~d~~~~-~~~~~~~~~l~~aA~re~s~dN~ly~P~~~di~~~~l~hFQ~hW~k 497 (915)
.|+||||..|.+.|+.+||.-+...-..-.... ..+....+.++++|.|+.+.|||||||.+.+++.+||.|||+||++
T Consensus 460 ~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkq 539 (889)
T KOG1356|consen 460 KLKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQ 539 (889)
T ss_pred hhhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhc
Confidence 999999999999999999998865111111111 0111233457899999999999999999989999999999999999
Q ss_pred CCCEEEeccccCCCCCCCChhhhhhhhhhhcccccccccCceEEEeCCCCCeeecccccccccccCccccCCCCceeeee
Q 002500 498 GEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKL 577 (915)
Q Consensus 498 GePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~~~~~~~~~v~aidCld~~ev~i~i~qFf~Gy~~gr~~~~gwp~mLKL 577 (915)
|||||||||++.+++++|+||+|||+|++.-..-..-.+.++.++||++ ++.+||.||++|+++++|||+||||
T Consensus 540 GqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKL 613 (889)
T KOG1356|consen 540 GQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKL 613 (889)
T ss_pred CCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEee
Confidence 9999999999999999999999999998865433333445566667766 6899999999999999999999999
Q ss_pred cCCCCchhhHHhhhhcchHHHhcCCcccccCCCCccchhcccCCCCCCCCCCCCcchhcccccccccCCCCcceeeeecc
Q 002500 578 KDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMP 657 (915)
Q Consensus 578 KDWPps~~Fee~LP~h~~efi~~LP~pEYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~DmS 657 (915)
|||||+++|+++||+||+|||++|||||||| ++|.||||++||.+|++||||||||||||+++++||||||||||||||
T Consensus 614 KDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvS 692 (889)
T KOG1356|consen 614 KDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVS 692 (889)
T ss_pred cCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehh
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cccchheecccccCCCchhhhhhcccccccccccCCCCCccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhcCCcc
Q 002500 658 DMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVET 737 (915)
Q Consensus 658 DAVNIL~ht~ev~~~~~q~~~I~k~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (915)
|||||||||++++....|...|.|..++. + .+.....+
T Consensus 693 DaVNILvyv~e~~~~~~~~~~~~k~~~~~----------------~----------~de~~~~~---------------- 730 (889)
T KOG1356|consen 693 DAVNILVYVGEPPGQIEQIAKVLKKIQEG----------------D----------LDEITRSR---------------- 730 (889)
T ss_pred hhhhheeeeccCCchHHhHHHHHHhhhhc----------------c----------hhhhhhhh----------------
Confidence 99999999999987444444443321111 0 00000000
Q ss_pred cccccccccccccCCCCCCCCCCCCceeeeeecCCChHHHHHHHHHHHhhcCCCCCCCCCcccCCCcCcceeeCHHHHHH
Q 002500 738 GTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRK 817 (915)
Q Consensus 738 ~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~k 817 (915)
..+..+.+||||||||+|||||||+||+||++||||. +.+|+||||||+||||.+||+|
T Consensus 731 -----------------~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~~----~~~v~hPIhDQS~YLd~~lr~R 789 (889)
T KOG1356|consen 731 -----------------ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGHE----VPKVHHPIHDQSWYLDRYLRRR 789 (889)
T ss_pred -----------------ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcCC----CCcccCCCcccceeccHHHHHH
Confidence 0124578999999999999999999999999999993 3458999999999999999999
Q ss_pred HHhhhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCCccchhhhhhhhhhhhhH
Q 002500 818 LKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISL 897 (915)
Q Consensus 818 LkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~LeVkkm~l 897 (915)
||||||||||||+|+||||||||||||||||||+||||||+||||||||.|||+||+|||+||++|.+++||||||+|++
T Consensus 790 LkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~ 869 (889)
T KOG1356|consen 790 LKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIY 869 (889)
T ss_pred HHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcC
Q 002500 898 YAASSAIKEVQKLVLD 913 (915)
Q Consensus 898 ya~~~avke~~~l~~d 913 (915)
||+..||++|+.+..+
T Consensus 870 hAVk~Av~~L~~~~s~ 885 (889)
T KOG1356|consen 870 HAVKDAVGTLKEAESS 885 (889)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999987653
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.81 E-value=4.6e-21 Score=179.55 Aligned_cols=88 Identities=28% Similarity=0.663 Sum_probs=71.0
Q ss_pred cCCCCcccccccCCCCeEEc------ccCC--CccccHhHHhhhcCCCChH---HhhhcCCCCCCccccccccccCcccc
Q 002500 191 TGGQICHQCRRNDRERVVWC------VKCD--KRGYCDSCISTWYSDIPLE---ELEKVCPACRGSCNCKACLRADNMIK 259 (915)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~e---dv~~~CP~Crg~CNCs~Clr~~g~~k 259 (915)
..|.+||||||||.+.++.| .+|. +++||+.||.+||+|+++| +.+|.||+|||||||++|++++|+.+
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~P 84 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAP 84 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCC
Confidence 58999999999999999999 7782 3789999999999997655 34699999999999999999999999
Q ss_pred ccc--ccCCcccchhhhHHHH
Q 002500 260 VRI--REIPVLDKLQHLYCLL 278 (915)
Q Consensus 260 ~~~--~e~~~~~k~~~~~YLl 278 (915)
|++ ..+....--.++|||+
T Consensus 85 Tg~l~~~a~~~G~~sv~~~L~ 105 (105)
T PF10497_consen 85 TGILYHKAKALGFKSVAHYLI 105 (105)
T ss_pred cHHHHHHHHHhChhHHHHHhC
Confidence 984 1222223334556653
No 3
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=99.56 E-value=9.5e-16 Score=124.15 Aligned_cols=42 Identities=38% Similarity=0.921 Sum_probs=39.8
Q ss_pred CCCCCCcccCCCCcceecCcCCCCchhHHHHHHhhhhhhhhH
Q 002500 17 IPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANS 58 (915)
Q Consensus 17 ~p~~~rc~r~dgk~wrc~~~~~~~~~~ce~h~~~~~~~~~~~ 58 (915)
+||++||+|+|||+|||+++|+++++|||+|++++|+|+++.
T Consensus 1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~~ 42 (46)
T PF08879_consen 1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRKS 42 (46)
T ss_pred CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCCC
Confidence 489999999999999999999999999999999999998864
No 4
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.49 E-value=1.5e-14 Score=133.10 Aligned_cols=83 Identities=27% Similarity=0.466 Sum_probs=63.0
Q ss_pred CceeeeeecCCChHHHHHHHHHHHhhcCCCCCCCCCcccCC--CcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEe
Q 002500 762 PGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP--LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFI 839 (915)
Q Consensus 762 ~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hP--IHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFI 839 (915)
+..+|-+++++|.+++++|++++. . ..+| ++.+...+.++. ..+.||+.|+|+|++||+|||
T Consensus 30 ~~k~W~~v~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i 93 (114)
T PF02373_consen 30 GSKVWYIVPPEDADKFEKFLRSKE--S----------QNCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFI 93 (114)
T ss_dssp SEEEEEEE-GGGHHHHHHHHHHHH--H----------HHSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE
T ss_pred cceEeEEechhhhhhHHHHHhhcc--c----------ccccccccccccccceee----eeccCcccccceECCCCEEEE
Confidence 356999999999999999999762 1 1223 344455555554 778999999999999999999
Q ss_pred CCCCccccccccccceeeccc
Q 002500 840 PAGCPFQVRNLQSTVQLGLDF 860 (915)
Q Consensus 840 PAGCPHQVRNLkSCIKVAlDF 860 (915)
|+|++|||.|+..||++|.+|
T Consensus 94 ~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 94 PPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp -TT-EEEEEESSSEEEEEEEE
T ss_pred CCCceEEEEeCCceEEEEecC
Confidence 999999999999999999998
No 5
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.91 E-value=2.1e-10 Score=117.72 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=33.1
Q ss_pred cceEEEeecCceEEeCCCCccccccc--cc-cceeeccccCCC
Q 002500 825 EPWSFEQHLGEAVFIPAGCPFQVRNL--QS-TVQLGLDFLFPE 864 (915)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 864 (915)
.+|.+++.+||++|||+|-.|||+|| .. ||.|...|.++.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 78999999999999999999999999 76 999999998764
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.93 E-value=0.00054 Score=57.20 Aligned_cols=54 Identities=33% Similarity=0.448 Sum_probs=42.7
Q ss_pred HHHhcCCcccccCCCCccchhcccCCCCCCCCCCCCcchhcccccccccCCCCcceeeeecccccchheecc
Q 002500 596 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667 (915)
Q Consensus 596 efi~~LP~pEYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~DmSDAVNIL~ht~ 667 (915)
..+..||+ .+||+.+++.....|+. +|+.+|. .+|+|.+|+|..|.||++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEecC
Confidence 35667777 68999999988777777 6666554 3789999999999999887653
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.96 E-value=0.0079 Score=67.72 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=49.7
Q ss_pred hhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHHHH-HHHHHhcCCc
Q 002500 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVR-LAEEIRCLPN 881 (915)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp~ 881 (915)
++.+.+.++-|.+||+||+|.|==|||-||...|.|--.++--=|+..=.+ |-+++-.+.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~e 323 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAE 323 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhh
Confidence 455777899999999999999999999999999999999998888876655 3344444443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.14 E-value=0.011 Score=47.81 Aligned_cols=30 Identities=40% Similarity=0.893 Sum_probs=27.9
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhH
Q 002500 320 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQ 349 (915)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~C-sydLCL~CC~ 349 (915)
|.||.|+++|..+.=.|..| .||||..|-.
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 57999999999999999999 7999999975
No 9
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=93.63 E-value=0.039 Score=45.30 Aligned_cols=30 Identities=40% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhH
Q 002500 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQ 349 (915)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sydLCL~CC~ 349 (915)
+.||.|+ .+|+.+.=.|..| .||||..|-.
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999987
No 10
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.46 E-value=0.041 Score=45.54 Aligned_cols=30 Identities=33% Similarity=0.925 Sum_probs=27.6
Q ss_pred ccCCCcccccc-ccccCCCC-CcchhhhhhHH
Q 002500 321 CCNICRIPIID-YHRHCGNC-MYDLCLSCCQD 350 (915)
Q Consensus 321 yCDnCkTSIvD-~HRSC~~C-sydLCL~CC~E 350 (915)
.||+|...|.. ++=.|..| .||||+.|-..
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 59999999999 88899999 99999999873
No 11
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=93.29 E-value=0.046 Score=44.49 Aligned_cols=32 Identities=38% Similarity=0.879 Sum_probs=29.0
Q ss_pred ccCCCccccccccccCCCCC-cchhhhhhHHhh
Q 002500 321 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 352 (915)
Q Consensus 321 yCDnCkTSIvD~HRSC~~Cs-ydLCL~CC~ELR 352 (915)
.||.|..+|...+=.|..|. ||||..|-.+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999987544
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.82 E-value=0.065 Score=51.54 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=43.2
Q ss_pred ccCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCcccccccccc--ceeec
Q 002500 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQST--VQLGL 858 (915)
Q Consensus 799 v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 858 (915)
-.||-++|.+|...-. =+|.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 59 H~hp~~~~~~~Vl~G~-----~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 59 HTHPLGEQTIYVLEGE-----GTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccCCCcceEEEEEecE-----EEEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 3688888999998873 2344555566668999999999999999999999 55544
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.29 E-value=0.062 Score=45.41 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.5
Q ss_pred EEEeecCceEEeCCCCcccccccccc
Q 002500 828 SFEQHLGEAVFIPAGCPFQVRNLQST 853 (915)
Q Consensus 828 tf~Q~lGEAVFIPAGCPHQVRNLkSC 853 (915)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998764
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=92.02 E-value=0.097 Score=58.41 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=40.0
Q ss_pred ceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHH
Q 002500 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (915)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (915)
|-...|.+||.||||.|==|=|-||--.|-|+..|+|=||.+
T Consensus 262 PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 262 PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 677899999999999999999999999999999999999965
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=90.42 E-value=0.16 Score=41.92 Aligned_cols=31 Identities=32% Similarity=0.924 Sum_probs=27.6
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhhhhhHH
Q 002500 320 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 350 (915)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~Cs-ydLCL~CC~E 350 (915)
|-||.|.+ +|+-..=.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 56999985 8999999999998 9999999765
No 16
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=90.30 E-value=0.13 Score=42.05 Aligned_cols=35 Identities=40% Similarity=0.843 Sum_probs=26.5
Q ss_pred cccccCCCcc-ccccccccCCCCC-cchhhhhhHHhh
Q 002500 318 EQMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLR 352 (915)
Q Consensus 318 ERvyCDnCkT-SIvD~HRSC~~Cs-ydLCL~CC~ELR 352 (915)
..+.||.|++ +|.-..=.|..|. ||||..|-.+-+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcC
Confidence 3578999999 9999998999998 999999987633
No 17
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.00 E-value=0.22 Score=48.31 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=30.8
Q ss_pred ceEEEeecCceEEeCCCCccccccccccceeeccccCCCCH
Q 002500 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 866 (915)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 866 (915)
.=.|+=+.||+|+||||.||.++|..+.-=+.++=-+|+..
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~ 114 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYL 114 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcC
Confidence 56677789999999999999999999844334444455543
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=89.09 E-value=0.22 Score=41.52 Aligned_cols=31 Identities=39% Similarity=0.937 Sum_probs=28.0
Q ss_pred ccCCCcc-ccccccccCCCCC---cchhhhhhHHh
Q 002500 321 CCNICRI-PIIDYHRHCGNCM---YDLCLSCCQDL 351 (915)
Q Consensus 321 yCDnCkT-SIvD~HRSC~~Cs---ydLCL~CC~EL 351 (915)
-||+|.. +|+.+.=.|..|. ||||..|-..-
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 3999998 9999999999998 99999998754
No 19
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=88.70 E-value=0.25 Score=40.04 Aligned_cols=36 Identities=36% Similarity=0.824 Sum_probs=30.7
Q ss_pred ccccCCCccccccccccCCCC-CcchhhhhhHHhhhc
Q 002500 319 QMCCNICRIPIIDYHRHCGNC-MYDLCLSCCQDLREA 354 (915)
Q Consensus 319 RvyCDnCkTSIvD~HRSC~~C-sydLCL~CC~ELR~g 354 (915)
.+.||.|...|....=.|..| .||||..|-.+-+.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 367999999999998899999 899999998855444
No 20
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=87.70 E-value=0.3 Score=40.61 Aligned_cols=33 Identities=36% Similarity=0.834 Sum_probs=28.1
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhh
Q 002500 320 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLR 352 (915)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~C-sydLCL~CC~ELR 352 (915)
+.||+|+. +|.-++=.|..| .||||+.|-..-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 46999998 999998899888 4999999987443
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=87.02 E-value=0.32 Score=40.42 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=27.1
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002500 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (915)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sydLCL~CC~E 350 (915)
|.||.|+ .+|.-..=.|..| .||||+.|-..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5799999 8999888888888 69999999873
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=86.25 E-value=0.39 Score=38.77 Aligned_cols=29 Identities=38% Similarity=1.051 Sum_probs=25.0
Q ss_pred ccCCCccccccccccCCCC-CcchhhhhhHH
Q 002500 321 CCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 350 (915)
Q Consensus 321 yCDnCkTSIvD~HRSC~~C-sydLCL~CC~E 350 (915)
-||.|.. |+-..+.|..| .||||..|-..
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 3999988 66799999999 89999999764
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.46 E-value=0.43 Score=51.97 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=24.8
Q ss_pred hCccceEEEeecCceEEeCCCCccccccccc
Q 002500 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
|.+..=.++=..||+|||||||||+..|.-+
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecCC
Confidence 4445555666789999999999999999754
No 24
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=82.23 E-value=1.1 Score=45.80 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=44.4
Q ss_pred cCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCC
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (915)
.|+- ++.+|+-.-. -++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 125 ~h~~-~E~~~Vl~G~-----~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 125 KHQG-EEIGTVLEGE-----IVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred ccCC-cEEEEEEEeE-----EEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 4443 5666665552 235666778889999999999999999999987766777777774
No 25
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=81.39 E-value=0.78 Score=56.83 Aligned_cols=75 Identities=21% Similarity=0.448 Sum_probs=47.2
Q ss_pred hhhhHHHHHhhhhhhh-hhhhhhhhhhhhhhhhccc-cccccccccCcccccccCCCccccccccccCCCCCcchhhhhh
Q 002500 271 LQHLYCLLSAVLPVVK-QIHQIQCSEVELEKKLRGN-EIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCC 348 (915)
Q Consensus 271 ~~~~~YLl~~lLP~Lk-qi~~EQ~~E~EiEAkIqG~-~i~i~~a~~~~DERvyCDnCkTSIvD~HRSC~~CsydLCL~CC 348 (915)
+..+.|+|- .++ ++.+.=..|+|-=+-++-. .+.... .....|-.|+.|-|++|++|-.|++|.+-+||.|-
T Consensus 185 ~e~~k~il~----~~gd~~c~~~~se~eAl~~~~~~~~~a~k~--a~~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~ 258 (889)
T KOG1356|consen 185 TETAKYILA----NLGDQFCQLVRSEKEALSMQRPDQKVAWKR--AVKGIREMCDRCETTLFNIHWRCPRCGFGVCLDCY 258 (889)
T ss_pred hHHHHHHhh----hccchhhhhhhccchhhcccCcccccchhh--cccCcchhhhhhcccccceeEEccccCCeeeecch
Confidence 345666664 333 5565555554432211110 111111 22345788999999999999999999999999887
Q ss_pred HHh
Q 002500 349 QDL 351 (915)
Q Consensus 349 ~EL 351 (915)
+--
T Consensus 259 r~~ 261 (889)
T KOG1356|consen 259 RKW 261 (889)
T ss_pred hhc
Confidence 643
No 26
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=79.78 E-value=0.84 Score=45.01 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.3
Q ss_pred eEEEeecCceEEeCCCCccccccccc
Q 002500 827 WSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 827 Wtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
-+.+-.+||...||+|.|||--||.+
T Consensus 88 ~ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 88 EHAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eeEEecCCCeEEcCCCCCCcccccCC
Confidence 36677899999999999999999985
No 27
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=78.95 E-value=1.2 Score=37.37 Aligned_cols=34 Identities=44% Similarity=0.955 Sum_probs=27.6
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhhh
Q 002500 320 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLRE 353 (915)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~C-sydLCL~CC~ELR~ 353 (915)
|-||.|+. +|.-+.=.|..| .||||..|-..-+.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~ 36 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRT 36 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCc
Confidence 46999995 799988888887 49999999875443
No 28
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=78.11 E-value=1.6 Score=42.93 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=26.5
Q ss_pred eEEEeecCceEEeCCCCccccccccccceeeccccCCC
Q 002500 827 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (915)
Q Consensus 827 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (915)
=++.=..||+++||||-||+.+|...+.=++. ++|.
T Consensus 75 ~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 75 EVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred EEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 34555789999999999999999855543333 5553
No 29
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=77.74 E-value=1.8 Score=32.77 Aligned_cols=42 Identities=31% Similarity=0.817 Sum_probs=28.1
Q ss_pred cccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
|--|...- ...+.-..|+ ..||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 44555443 2334445588 58999999998753 3467999985
No 30
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=76.23 E-value=1.3 Score=33.07 Aligned_cols=27 Identities=33% Similarity=0.894 Sum_probs=12.8
Q ss_pred ccCCCcccccc-ccccCCCCCcchhhhh
Q 002500 321 CCNICRIPIID-YHRHCGNCMYDLCLSC 347 (915)
Q Consensus 321 yCDnCkTSIvD-~HRSC~~CsydLCL~C 347 (915)
.|+.|+++|.. +.=+|+.|.|+|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999988
No 31
>PHA02926 zinc finger-like protein; Provisional
Probab=75.74 E-value=1.2 Score=48.18 Aligned_cols=33 Identities=27% Similarity=0.761 Sum_probs=24.7
Q ss_pred cCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002500 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (915)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (915)
+|+ ..||..||..|-..-....+...||.||..
T Consensus 196 ~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 196 SCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 477 589999999998742223456789999974
No 32
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=75.62 E-value=1.7 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.6
Q ss_pred ecCceEEeCCCCcccccccccc
Q 002500 832 HLGEAVFIPAGCPFQVRNLQST 853 (915)
Q Consensus 832 ~lGEAVFIPAGCPHQVRNLkSC 853 (915)
..||.||||+|+.|++.|..+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5699999999999999998754
No 33
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=75.33 E-value=1.5 Score=48.65 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=13.8
Q ss_pred ecCceEEeCCCCccc
Q 002500 832 HLGEAVFIPAGCPFQ 846 (915)
Q Consensus 832 ~lGEAVFIPAGCPHQ 846 (915)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 579999999999996
No 34
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=75.33 E-value=1.8 Score=36.41 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=24.8
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhHH
Q 002500 320 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 350 (915)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~C-sydLCL~CC~E 350 (915)
+.||.|...|.-+.=.|-.| .||||..|-..
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 35999998888776677776 49999999863
No 35
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.88 E-value=1.8 Score=49.98 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.4
Q ss_pred EEeecCceEEeCCCCccc
Q 002500 829 FEQHLGEAVFIPAGCPFQ 846 (915)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQ 846 (915)
+.=++|||||||||.||=
T Consensus 239 v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEeCCCCEEEeCCCCCeE
Confidence 344689999999999996
No 36
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.07 E-value=1.5 Score=34.93 Aligned_cols=30 Identities=37% Similarity=0.934 Sum_probs=21.7
Q ss_pred CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002500 206 RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (915)
Q Consensus 206 ~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (915)
.++.. .|+ ..||..||..|... ...||.||
T Consensus 15 ~~~~l-~C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 15 KVVKL-PCG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CEEEE-TTS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred eEEEc-cCC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 34444 488 69999999999854 24999997
No 37
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=71.21 E-value=3 Score=43.93 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=31.6
Q ss_pred ceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHH
Q 002500 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGE 868 (915)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 868 (915)
.+.+.=..||+|+||+|..|++.|.-+.-=+.+- |.|...++
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~~ 160 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAGH 160 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCccc
Confidence 6889999999999999999999998764433333 44544444
No 38
>PHA02929 N1R/p28-like protein; Provisional
Probab=66.88 E-value=3.8 Score=44.68 Aligned_cols=47 Identities=23% Similarity=0.696 Sum_probs=31.4
Q ss_pred CCCCcccccccCCC------CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002500 192 GGQICHQCRRNDRE------RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (915)
Q Consensus 192 ~~~~CHQCrqkt~~------~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (915)
....|-=|...-.. ....=..|+ ..||..||..|... .-.||.||..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~------~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKE------KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhc------CCCCCCCCCE
Confidence 34677777664221 122334677 58999999999764 3489999973
No 39
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=66.43 E-value=3 Score=47.04 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=16.4
Q ss_pred EEeecCceEEeCCCCcccc
Q 002500 829 FEQHLGEAVFIPAGCPFQV 847 (915)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQV 847 (915)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5557899999999999974
No 40
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.60 E-value=10 Score=39.95 Aligned_cols=47 Identities=30% Similarity=0.671 Sum_probs=35.6
Q ss_pred cCCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
..-..|--|.-.....+..=++|| ..||..||++--. ...+||.|+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~alk------~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDALK------NTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhccccccccc-hhHHHHHHHHHHH------hCCCCCCccc
Confidence 355789999877776665667899 5999999976432 3469999985
No 41
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.69 E-value=4.3 Score=29.49 Aligned_cols=26 Identities=35% Similarity=1.124 Sum_probs=19.6
Q ss_pred ccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002500 211 VKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (915)
Q Consensus 211 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (915)
..|+ ..||..|+..|+. .....||.|
T Consensus 14 ~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 14 LPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred ecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 4578 4799999999876 234579887
No 42
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=63.69 E-value=4.2 Score=33.26 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=30.9
Q ss_pred CCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 194 QICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 194 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
..|.-|...... +.-..|+-..||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCGHLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCCChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 467788877654 334468854499999999986 4569999986
No 43
>PLN02288 mannose-6-phosphate isomerase
Probab=63.43 E-value=3.6 Score=47.75 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.8
Q ss_pred EeecCceEEeCCCCccc
Q 002500 830 EQHLGEAVFIPAGCPFQ 846 (915)
Q Consensus 830 ~Q~lGEAVFIPAGCPHQ 846 (915)
.=.+|||||||||-||=
T Consensus 254 ~L~PGeaifl~ag~~HA 270 (394)
T PLN02288 254 KLNPGEALYLGANEPHA 270 (394)
T ss_pred ecCCCCEEEecCCCCce
Confidence 34589999999999996
No 44
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=62.50 E-value=7 Score=38.45 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=26.1
Q ss_pred EEEee----cCceEEeCCCCccccccc--cccceeecc-ccCCCC
Q 002500 828 SFEQH----LGEAVFIPAGCPFQVRNL--QSTVQLGLD-FLFPES 865 (915)
Q Consensus 828 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlD-FVSPEn 865 (915)
.+.|. .||.++||+|.||=+.|. .+.+.++.= .-+|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 35555 999999999999999999 566665544 444444
No 45
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=6.6 Score=43.88 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=36.5
Q ss_pred cCCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCcc
Q 002500 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSC 246 (915)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~C 246 (915)
.+...|-=|--... --.|+-|| ..||-.||.-|-.+-++ ||.||--|
T Consensus 237 ~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 35578988986664 23677788 58999999999998543 99999754
No 46
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=62.24 E-value=7.3 Score=41.36 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=32.5
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcC--CCCh--------HHhhhcCCCCCCc
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYS--DIPL--------EELEKVCPACRGS 245 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~--------edv~~~CP~Crg~ 245 (915)
+...|.=|...-...++ +.|+ ..||..||..|-- ..+. ..-...||.||.-
T Consensus 17 ~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 34567777665554444 5788 5999999999842 1111 1124689999973
No 47
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=59.50 E-value=7 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.898 Sum_probs=22.1
Q ss_pred eEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002500 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (915)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (915)
.+.-..|+ ..||..||.++... ...||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHC------TSB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHC------cCCCcCC
Confidence 55677899 58999999998654 2699987
No 48
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=58.99 E-value=4.9 Score=44.61 Aligned_cols=32 Identities=31% Similarity=0.745 Sum_probs=27.4
Q ss_pred ccccCCCcc-ccccccccCCCCC-cchhhhhhHH
Q 002500 319 QMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 350 (915)
Q Consensus 319 RvyCDnCkT-SIvD~HRSC~~Cs-ydLCL~CC~E 350 (915)
-+-||+|.+ .|+-.-=.|.-|. ||||-.|=..
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 377999999 9999888888774 9999999764
No 49
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=58.19 E-value=6.5 Score=32.54 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=26.0
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002500 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (915)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sydLCL~CC~E 350 (915)
+-||.|. ++|+-.-=.|..| .||||-.|-.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 4599999 5999988889876 69999999763
No 50
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=56.78 E-value=5.6 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.850 Sum_probs=19.0
Q ss_pred cCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002500 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (915)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (915)
.|+ -.||..||.++..+.. ...+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 588 5899999999987642 223889987
No 51
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.73 E-value=6.9 Score=42.49 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=34.5
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
+..-|-=|--.-.+.+|.| |+ ..||-+||.+|-.- -.....||+|.+
T Consensus 46 ~~FdCNICLd~akdPVvTl--CG-HLFCWpClyqWl~~---~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTL--CG-HLFCWPCLYQWLQT---RPNSKECPVCKA 92 (230)
T ss_pred CceeeeeeccccCCCEEee--cc-cceehHHHHHHHhh---cCCCeeCCcccc
Confidence 4457888887777777776 88 58999999999431 223457899976
No 52
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=55.69 E-value=5.8 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.0
Q ss_pred ccccCCCccccccccccCCCCCcch
Q 002500 319 QMCCNICRIPIIDYHRHCGNCMYDL 343 (915)
Q Consensus 319 RvyCDnCkTSIvD~HRSC~~CsydL 343 (915)
.++|.+|.+.|-+=.|-|++|...|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 3789999999999999999998765
No 53
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=54.89 E-value=7.7 Score=31.05 Aligned_cols=30 Identities=23% Similarity=0.631 Sum_probs=23.9
Q ss_pred cccccccCCCCeEEcccCCCccccHhHHhhhcCC
Q 002500 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSD 229 (915)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e 229 (915)
|+.|++++.-....|..|+ +.||. .-||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e 30 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPE 30 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCcc
Confidence 8999999976578899999 58875 566665
No 54
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.83 E-value=9 Score=44.70 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=34.9
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCccc
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCN 247 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CN 247 (915)
....|.-|...-...+ -+.|+ ..||..||..+.... ..||.|+..+.
T Consensus 25 ~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC------CCCCCCCCccc
Confidence 5678999986544433 25788 589999999987642 37999998754
No 55
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=54.73 E-value=7.6 Score=46.22 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred CccceEEEeecCceEEeCCCCccccccccc
Q 002500 823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 823 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
.|..=++.=..||.|+||+|.||+.+|...
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 344445666899999999999999999865
No 56
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=53.97 E-value=11 Score=30.21 Aligned_cols=42 Identities=26% Similarity=0.679 Sum_probs=27.9
Q ss_pred cccccccC-CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 196 CHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 196 CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
|-.|.+.- .....+=++|+ -.||..||.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 45565555 22233444677 589999999888 33468999973
No 57
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=52.76 E-value=8.6 Score=39.56 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=24.5
Q ss_pred cceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCcccccccc
Q 002500 806 EVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (915)
Q Consensus 806 Q~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (915)
.+.||...+ ++|.-+|=.|.=..+....||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 456777433 47999999999999999999999999999965
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=52.69 E-value=9.6 Score=44.96 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.0
Q ss_pred ccceEEEeecCceEEeCCCCcccccccccc
Q 002500 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQST 853 (915)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSC 853 (915)
|..=++.=..||.|+||+|.||+.+|..+-
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~ 441 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKI 441 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCC
Confidence 445566778999999999999999998763
No 59
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=52.08 E-value=7.2 Score=27.98 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.2
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002500 321 CCNICRIPIIDYHRHCGNCMYDL 343 (915)
Q Consensus 321 yCDnCkTSIvD~HRSC~~CsydL 343 (915)
||-+|...|-|=.+-|++|...|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 78999999999999999998765
No 60
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=51.44 E-value=14 Score=41.37 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=31.2
Q ss_pred eEEEeecCceEEeCCCCccccccccccceeeccccCCCCHH
Q 002500 827 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (915)
Q Consensus 827 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (915)
..|+=.+||..+||.|++|++.....|+.+++-|..|=...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 46777899999999999999999999999999999884433
No 61
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=51.08 E-value=7 Score=30.33 Aligned_cols=29 Identities=24% Similarity=0.920 Sum_probs=21.8
Q ss_pred EcccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002500 209 WCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (915)
Q Consensus 209 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (915)
.=..|+ -.||..||.+++.. .....||.|
T Consensus 13 ~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 13 ILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp EETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred EEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 345688 58999999999873 334579987
No 62
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=49.85 E-value=13 Score=36.59 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=36.6
Q ss_pred cCCCcCcceeeCHHH-HHHHHhhhCccceEEEeecCceEEeCCCCcccccccc--ccceee
Q 002500 800 THPLYGEVVYLNGDH-KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLG 857 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~h-k~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVA 857 (915)
.||-.++-+|+-.-. .-.+-++.|=+-+++.-..||+++||+|-+|+..|.. .++-++
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA 107 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE
Confidence 345445666654431 1111122222457888899999999999999999975 344444
No 63
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=48.83 E-value=13 Score=42.85 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=47.2
Q ss_pred cCCCcCcceeeCHHH-HHHHHhhhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHHHHHHHHHhc
Q 002500 800 THPLYGEVVYLNGDH-KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRC 878 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~h-k~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~ 878 (915)
.||--+..+|+-.-. +..+-..-| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..
T Consensus 262 ~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~ 339 (367)
T TIGR03404 262 WHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLAL 339 (367)
T ss_pred eCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhh
Confidence 466656655554432 211111111 356677789999999999999999998643333333333332221 25666677
Q ss_pred CCcc
Q 002500 879 LPND 882 (915)
Q Consensus 879 Lp~~ 882 (915)
+|.+
T Consensus 340 ~p~~ 343 (367)
T TIGR03404 340 TPPQ 343 (367)
T ss_pred CCHH
Confidence 7763
No 64
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=48.81 E-value=19 Score=41.72 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=29.1
Q ss_pred HHHHHhhh-cCCCEEEeccccCCCCC-CCChh-hhhhhhhh
Q 002500 489 GNFRKHWV-KGEPVIVKQVCDSSSMS-IWDPK-DIWRGIRE 526 (915)
Q Consensus 489 ~hFQ~hW~-kGePVIVr~Vl~~~s~l-sW~P~-~mwra~~e 526 (915)
.+|=+-|. +..|||+|+.+..-.++ .|.+- ++..|+.+
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 57777776 88999999999876666 78877 77665543
No 65
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=4.4 Score=50.04 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=31.1
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (915)
+..+|--|...-.+ +.=++|+ ..||..|++.||.-- .-+||.|-
T Consensus 642 ~~LkCs~Cn~R~Kd--~vI~kC~-H~FC~~Cvq~r~etR-----qRKCP~Cn 685 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKD--AVITKCG-HVFCEECVQTRYETR-----QRKCPKCN 685 (698)
T ss_pred hceeCCCccCchhh--HHHHhcc-hHHHHHHHHHHHHHh-----cCCCCCCC
Confidence 66789999833333 2334688 589999999999742 35899763
No 66
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=48.31 E-value=7.6 Score=39.48 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=38.3
Q ss_pred cCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCc
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 844 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCP 844 (915)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|--
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 458999999999999999999999999977 6799999988864
No 67
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=44.96 E-value=17 Score=39.76 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.8
Q ss_pred CCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCccccccccc
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
|+-.++-+|+-.--- +.-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l-----~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEV-----NVTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 344455666654421 12345667788889999999999999999874
No 69
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.13 E-value=26 Score=36.02 Aligned_cols=43 Identities=26% Similarity=0.675 Sum_probs=33.3
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (915)
.-..|.-|...=... ....|+ ..||..||...-. ....||.||
T Consensus 12 ~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 567888888776655 444577 5899999988776 458999999
No 70
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.73 E-value=3.8 Score=33.30 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=29.7
Q ss_pred CcccccccC-CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002500 195 ICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (915)
Q Consensus 195 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (915)
+|+-|++.. .+.++.|..|++ .|=..|+.............|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~-~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNR-WYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSC-EEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCCh-hhCcccCCCChhhccCCCCcEECcCCc
Confidence 477888855 557999999994 454555543322111112279999885
No 71
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=39.83 E-value=10 Score=43.61 Aligned_cols=17 Identities=53% Similarity=0.927 Sum_probs=13.4
Q ss_pred EeecCceEEeCCCCccc
Q 002500 830 EQHLGEAVFIPAGCPFQ 846 (915)
Q Consensus 830 ~Q~lGEAVFIPAGCPHQ 846 (915)
.=.+|||+|+|||-||-
T Consensus 253 ~L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 253 ELQPGEAIFLPAGEPHA 269 (373)
T ss_dssp EE-TT-EEEEHTTHHEE
T ss_pred EecCCceEEecCCCccc
Confidence 34589999999999998
No 72
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=39.82 E-value=24 Score=31.49 Aligned_cols=43 Identities=28% Similarity=0.681 Sum_probs=26.7
Q ss_pred CCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCC
Q 002500 194 QICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (915)
Q Consensus 194 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (915)
..|--|+.....-.+.=..|+ -.|-..||.+|..... .||.||
T Consensus 31 ~~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 31 DPCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp STTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSS------B-TTSS
T ss_pred ChhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCC------cCCCCC
Confidence 344444444433333334577 6899999999986532 999997
No 73
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=39.45 E-value=12 Score=43.99 Aligned_cols=32 Identities=31% Similarity=0.906 Sum_probs=28.4
Q ss_pred cccccCCCcccccccc-ccCCCCC-cchhhhhhH
Q 002500 318 EQMCCNICRIPIIDYH-RHCGNCM-YDLCLSCCQ 349 (915)
Q Consensus 318 ERvyCDnCkTSIvD~H-RSC~~Cs-ydLCL~CC~ 349 (915)
+...||+|..-|-+.- -.|-.|. |||||-|..
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 4567999999999875 7999999 999999986
No 74
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=39.38 E-value=8.4 Score=43.58 Aligned_cols=30 Identities=33% Similarity=0.992 Sum_probs=26.4
Q ss_pred cccCCCccccccc-cccCCCC-CcchhhhhhH
Q 002500 320 MCCNICRIPIIDY-HRHCGNC-MYDLCLSCCQ 349 (915)
Q Consensus 320 vyCDnCkTSIvD~-HRSC~~C-sydLCL~CC~ 349 (915)
..||.|..-|.|. |-+|-.| -||||+-|.-
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 5699999999986 5689999 9999999975
No 75
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=37.63 E-value=27 Score=32.76 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=35.7
Q ss_pred CCCCcccccccCCC-CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 192 GGQICHQCRRNDRE-RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 192 ~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
-...|..|+-...+ .++.++ |+ ..|=+.||.+|-... ..+-.||.||.
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~-C~-H~FH~hCI~kWl~~~---~~~~~CPmCR~ 79 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGK-CS-HNFHMHCILKWLSTQ---SSKGQCPMCRQ 79 (85)
T ss_pred cccCCCCccCCCCCCceeecc-Cc-cHHHHHHHHHHHccc---cCCCCCCCcCC
Confidence 44578888876644 566665 88 589999999998742 33579999995
No 76
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.02 E-value=13 Score=41.72 Aligned_cols=44 Identities=25% Similarity=0.687 Sum_probs=30.7
Q ss_pred eEEcccCC-CccccHhHHhhhcCCCChHHh--------hhcCCCCCCccccccccccC
Q 002500 207 VVWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRGSCNCKACLRAD 255 (915)
Q Consensus 207 ~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Crg~CNCs~Clr~~ 255 (915)
-..|.+|= |-..|..||.+||-.- .+++ +-.||.||. ++|.+.-
T Consensus 317 ga~c~nc~crp~wc~~cla~~f~~r-q~~v~r~~~~~~~~~cp~cr~----~fci~dv 369 (381)
T KOG3899|consen 317 GAPCENCICRPLWCRSCLAQIFIGR-QDNVYRYEYHRGSAQCPTCRK----NFCIRDV 369 (381)
T ss_pred CCcccccccccHHHHHHHHHHHhhc-ccchhHHHHHhcCCCCcchhh----ceEEeee
Confidence 35688865 5689999999998753 2222 468999887 4666544
No 77
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=36.76 E-value=12 Score=34.88 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=44.5
Q ss_pred ecCCChHHHHHHHHHH-HhhcCCCCCCCCCcccCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCcccc
Q 002500 769 FRRQDVPKLIEYLREH-WTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 847 (915)
Q Consensus 769 FrreDv~KLreyL~kh-~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQV 847 (915)
|.|.+.++|.+|.++. .+-+....-.. ..+..||-. ||+++.+++|.+.+|.+ .||+||+=||-.+.|
T Consensus 23 ~srk~id~l~~~ak~~ga~gL~~ikv~~-~~~~s~i~k---fl~e~~~~~l~~~~~a~-------~GD~ll~~Ag~~~~v 91 (95)
T PF02938_consen 23 LSRKQIDKLEEFAKKFGAKGLAWIKVEE-GELKSPIAK---FLSEEELKALIERLGAK-------PGDLLLFVAGKKEIV 91 (95)
T ss_dssp TTHCCCCCCCCHHHHCCHCHCCCEEEST-CEEECTTCC---CCHHHHHHHHHHHTT---------TTEEEEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceeeeEcC-CcccCcccc---cCCHHHHHHHHHHhCCC-------CCCEEEEECCCHHHH
Confidence 4556666677776532 11111100001 235567733 59999999999999996 599999999998887
Q ss_pred cc
Q 002500 848 RN 849 (915)
Q Consensus 848 RN 849 (915)
++
T Consensus 92 ~~ 93 (95)
T PF02938_consen 92 NK 93 (95)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 78
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=35.93 E-value=15 Score=36.40 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCC
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 843 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGC 843 (915)
-|.|...-.+.+.+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 18 a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 18 APLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred CCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 46778888888888899999999999976 589999999985
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.27 E-value=35 Score=38.78 Aligned_cols=43 Identities=26% Similarity=0.692 Sum_probs=29.8
Q ss_pred CCcccccccC---CC--CeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 194 QICHQCRRND---RE--RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 194 ~~CHQCrqkt---~~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
.+|--|.... .. .++. .|+ ..||..||.+-+..-+ ..||.|+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CG-H~~C~sCv~~l~~~~~-----~~CP~C~~ 51 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCG-HTLCESCVDLLFVRGS-----GSCPECDT 51 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCC-CcccHHHHHHHhcCCC-----CCCCCCCC
Confidence 5799998854 22 1333 688 5899999999765322 38998864
No 80
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.71 E-value=24 Score=26.18 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=20.3
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002500 321 CCNICRIPIIDYHRHCGNCMYDL 343 (915)
Q Consensus 321 yCDnCkTSIvD~HRSC~~CsydL 343 (915)
.|..|..-|-.--+.||.|.|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48889999999999999999974
No 81
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=34.64 E-value=21 Score=40.11 Aligned_cols=43 Identities=28% Similarity=0.760 Sum_probs=31.1
Q ss_pred CCCCcccccccCCCCeEEcc-cCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 192 GGQICHQCRRNDRERVVWCV-KCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
....||-|.-- ..+.|- .|+ .-||.-||+++-++.. .||+||-
T Consensus 24 s~lrC~IC~~~---i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 24 SMLRCRICDCR---ISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred hHHHhhhhhhe---eecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 34568887532 244554 488 5899999999998865 6999985
No 82
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=34.56 E-value=30 Score=38.30 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.1
Q ss_pred hhCccceEEEeecCceEEeCCCCccccccccccc
Q 002500 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 854 (915)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 854 (915)
.|-|.+=++.-..||+||||+|.||+......|-
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3667778899999999999999999987655554
No 83
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=33.40 E-value=19 Score=41.49 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=15.1
Q ss_pred eecCCChHHHHHHHHHHHhhcCC
Q 002500 768 VFRRQDVPKLIEYLREHWTDFGR 790 (915)
Q Consensus 768 IFrreDv~KLreyL~kh~~Ef~~ 790 (915)
=||-+-.++|+..|++-+-.+|.
T Consensus 243 eyrDehfdfiq~~lRkFCLr~Ga 265 (473)
T KOG3905|consen 243 EYRDEHFDFIQSHLRKFCLRYGA 265 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCc
Confidence 36666677777777766655553
No 84
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=32.42 E-value=33 Score=36.12 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=46.2
Q ss_pred Cccee-eCHHHHHHHHhhhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHH
Q 002500 805 GEVVY-LNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 869 (915)
Q Consensus 805 DQ~fY-Lt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 869 (915)
|..|| |.-++.-++.+ +=+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.+
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~ 118 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDG 118 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccc
Confidence 55566 44443333333 22346788899999999999999998899999999998888876553
No 85
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=32.28 E-value=19 Score=41.29 Aligned_cols=34 Identities=35% Similarity=0.935 Sum_probs=27.4
Q ss_pred cccccccCCCccccccccc-cCCCCC-cchhhhhhH
Q 002500 316 ADEQMCCNICRIPIIDYHR-HCGNCM-YDLCLSCCQ 349 (915)
Q Consensus 316 ~DERvyCDnCkTSIvD~HR-SC~~Cs-ydLCL~CC~ 349 (915)
--|+|-||.|.---|-|.| -|-.|+ ||||-+|--
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 3588999999777777666 488886 999999975
No 86
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=32.15 E-value=33 Score=35.56 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=39.9
Q ss_pred ceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHHH
Q 002500 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAV 870 (915)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~ 870 (915)
..++.=..||..+||+|.||..+--..||=+.+.=..|++...++
T Consensus 69 ~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~ 113 (159)
T TIGR03037 69 REDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGF 113 (159)
T ss_pred EEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcce
Confidence 467888999999999999999988999999999999999877643
No 87
>PRK11171 hypothetical protein; Provisional
Probab=29.98 E-value=40 Score=37.08 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.0
Q ss_pred ccceEEEeecCceEEeCCCCccccccccc
Q 002500 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
|..=++.=..||.|+||+|.||+.+|..+
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g~ 126 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAGA 126 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 33446677889999999999999999864
No 88
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.91 E-value=27 Score=44.99 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.3
Q ss_pred cCCCCcccccccCCCCeEEcccCCC----ccccHhH
Q 002500 191 TGGQICHQCRRNDRERVVWCVKCDK----RGYCDSC 222 (915)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r----~~FC~~C 222 (915)
.....|..|.+.+. ...|.+|+. ..||..|
T Consensus 624 Vg~RfCpsCG~~t~--~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 624 IGRRKCPSCGKETF--YRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred ccCccCCCCCCcCC--cccCCCCCCCCCcceeCccc
Confidence 58889999999874 578999994 3466666
No 89
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=29.82 E-value=22 Score=32.04 Aligned_cols=13 Identities=46% Similarity=1.661 Sum_probs=9.9
Q ss_pred cccHhHHhhhcCC
Q 002500 217 GYCDSCISTWYSD 229 (915)
Q Consensus 217 ~FC~~CL~~rY~e 229 (915)
.||..||.+||.+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 90
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=29.74 E-value=23 Score=39.17 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred cccCCCccccccccccCCCCCc
Q 002500 320 MCCNICRIPIIDYHRHCGNCMY 341 (915)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~Csy 341 (915)
--|+||.+-+.-|.-+||+|+.
T Consensus 83 ~~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 83 GKCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhhccccceeeehhhcCCCCCc
Confidence 4599999999999999999974
No 91
>PRK11171 hypothetical protein; Provisional
Probab=29.46 E-value=36 Score=37.38 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred hhCccceEEEeecCceEEeCCCCccccccccc
Q 002500 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
++.+..-++.=..||++++|+++||+.+|.-+
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCCC
Confidence 46677888888999999999999999999754
No 92
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=29.09 E-value=31 Score=28.59 Aligned_cols=34 Identities=24% Similarity=0.621 Sum_probs=26.0
Q ss_pred CCcccccccC--CCCeEEcccCCCccccHhHHhhhcC
Q 002500 194 QICHQCRRND--RERVVWCVKCDKRGYCDSCISTWYS 228 (915)
Q Consensus 194 ~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 228 (915)
..|+.|.++= ..+...|+.|++ .||..|...+-.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~-~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGR-IFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcC-CcChHHcCCeee
Confidence 4688888543 335778999994 899999987744
No 93
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=29.02 E-value=30 Score=30.84 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.9
Q ss_pred EEEeecCceEEeCCCCc
Q 002500 828 SFEQHLGEAVFIPAGCP 844 (915)
Q Consensus 828 tf~Q~lGEAVFIPAGCP 844 (915)
++.=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 45557999999999984
No 94
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=28.97 E-value=52 Score=27.47 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=28.8
Q ss_pred CcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002500 195 ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (915)
Q Consensus 195 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (915)
.|-=|++--.+.++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 45555555444433 4677 58999999998854 4589998753
No 95
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=28.82 E-value=51 Score=34.59 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCcccCCCcCcceeeCHHHHHHHHhhhCccceEEEe-ecCceEEeCCCCccc
Q 002500 774 VPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGCPFQ 846 (915)
Q Consensus 774 v~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q-~lGEAVFIPAGCPHQ 846 (915)
-+||..|...|. |... .+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.=|-
T Consensus 79 deKvk~FfEEhl----h~de-----eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHR 135 (179)
T KOG2107|consen 79 DEKVKSFFEEHL----HEDE-----EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHR 135 (179)
T ss_pred HHHHHHHHHHhc----Cchh-----heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceee
Confidence 367777776554 3321 344567888999888754 5675544 469999999999886
No 96
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=28.70 E-value=23 Score=30.39 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=19.2
Q ss_pred eEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCc
Q 002500 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (915)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (915)
.++|.+|++. -.+.++ ...++.+||.|+.+
T Consensus 4 eiRC~~Cnkl-------La~~g~--~~~leIKCpRC~ti 33 (51)
T PF10122_consen 4 EIRCGHCNKL-------LAKAGE--VIELEIKCPRCKTI 33 (51)
T ss_pred ceeccchhHH-------HhhhcC--ccEEEEECCCCCcc
Confidence 5789888862 222332 23567899999853
No 97
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=28.29 E-value=30 Score=43.46 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=27.2
Q ss_pred CCCcccccccCCC-------CeEEcccCCCccccHhHHhhh
Q 002500 193 GQICHQCRRNDRE-------RVVWCVKCDKRGYCDSCISTW 226 (915)
Q Consensus 193 ~~~CHQCrqkt~~-------~~v~C~~C~r~~FC~~CL~~r 226 (915)
...|+.|+++-.. +.--|++|+ +.||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 5789999988742 455699999 59999999887
No 98
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.33 E-value=48 Score=34.85 Aligned_cols=64 Identities=20% Similarity=0.585 Sum_probs=44.3
Q ss_pred Cccccccc----CCCCeEEcccCCCccccHhHHhhhcCCC------ChHHhhhcCCCCCCc-----------cccccccc
Q 002500 195 ICHQCRRN----DRERVVWCVKCDKRGYCDSCISTWYSDI------PLEELEKVCPACRGS-----------CNCKACLR 253 (915)
Q Consensus 195 ~CHQCrqk----t~~~~v~C~~C~r~~FC~~CL~~rY~e~------~~edv~~~CP~Crg~-----------CNCs~Clr 253 (915)
+|+.|... .++.+|.|..|. ..|=-.||-.|-.-. ..+.+.-.|-+|.|+ =.|..|..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~ 79 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKK 79 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCC
Confidence 58899542 367899999999 578888998886531 124556789999875 34566665
Q ss_pred cCcccc
Q 002500 254 ADNMIK 259 (915)
Q Consensus 254 ~~g~~k 259 (915)
...+.+
T Consensus 80 ~G~~c~ 85 (175)
T PF15446_consen 80 PGPSCK 85 (175)
T ss_pred CCCCCc
Confidence 554433
No 99
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.12 E-value=59 Score=37.57 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=34.8
Q ss_pred cceEEEeecCceEEeCCCCccccccccccceeec-----cccCCCCHHHHHHHHHHHhcCCc
Q 002500 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGL-----DFLFPESVGEAVRLAEEIRCLPN 881 (915)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPEnV~eC~rLteEfR~Lp~ 881 (915)
+-+++.=..||.++||+|.+|-.+|+..=..+.+ .|-|+..+. ++.=|+.+|.
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~~----~~~~l~~~p~ 165 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTFL----VTDWLAHTPK 165 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCcceee----HHHHHHhCCH
Confidence 3456567899999999999999999964323333 355565322 2333555665
No 100
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=26.54 E-value=41 Score=39.50 Aligned_cols=44 Identities=39% Similarity=0.603 Sum_probs=38.2
Q ss_pred cccccccccCCCCCceecCC--ccccCchhHHHH-HHhhhcCCCEEEe
Q 002500 460 SLCQYAHREDRDGNFLYCPS--SHDIRSEGIGNF-RKHWVKGEPVIVK 504 (915)
Q Consensus 460 ~l~~aA~re~s~dN~ly~P~--~~di~~~~l~hF-Q~hW~kGePVIVr 504 (915)
+|-+||+|. +-.|=||||. +.-+...+|.+| ++|..+|.-|||.
T Consensus 160 ~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 160 QLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 578999998 7789999996 778888999999 6899999998884
No 101
>PF12852 Cupin_6: Cupin
Probab=26.15 E-value=39 Score=34.38 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=27.5
Q ss_pred ccCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCcccccccc
Q 002500 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (915)
Q Consensus 799 v~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (915)
..|=+-..++||.-.- +-+| +.=..||.||+|.|.+|...--.
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~~--~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGEP--IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCCe--EEecCCCEEEEcCCCCeEeCCCC
Confidence 4555566667766221 1122 44467999999999999985433
No 102
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=26.05 E-value=64 Score=30.58 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=45.4
Q ss_pred eeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCCccchhhhh
Q 002500 809 YLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQ 888 (915)
Q Consensus 809 YLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d 888 (915)
++|.+-+..|..|||+ ..+|.+.. |.||-||- .+-..||+=|..-|++|.+|--
T Consensus 2 ~~~~~~k~~l~~eyg~-------~~~dtgs~----evq~a~Lt---------------~ri~~L~~Hlk~hkKD~~srRG 55 (89)
T COG0184 2 SLTSEIKQELRDEYGI-------PEVDTGSG----EVQLALLT---------------ERINNLTEHLKEHKKDHHSRRG 55 (89)
T ss_pred CchHHHHHHHHHHhCC-------CCCCCCCc----HHHHHHHH---------------HHHHHHHHHHHHCCcchhHHHH
Confidence 6788999999999997 45555543 78888774 5667899999999999998876
Q ss_pred hhhh
Q 002500 889 VLEV 892 (915)
Q Consensus 889 ~LeV 892 (915)
++.+
T Consensus 56 L~~~ 59 (89)
T COG0184 56 LLLL 59 (89)
T ss_pred HHHH
Confidence 5543
No 103
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=25.56 E-value=30 Score=26.89 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.3
Q ss_pred CCCcceeeeecccccchheec
Q 002500 646 GNSVKNLHFNMPDMVYLLVHM 666 (915)
Q Consensus 646 GDSvTkLH~DmSDAVNIL~ht 666 (915)
|.|||+||.=--.-||+|.-+
T Consensus 3 glsvt~lhlfrde~vnflfci 23 (35)
T PF13216_consen 3 GLSVTNLHLFRDEKVNFLFCI 23 (35)
T ss_pred ceEEEEEEEeecCCccEEEEe
Confidence 689999999888889999765
No 104
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=25.40 E-value=86 Score=31.92 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=35.7
Q ss_pred ccCcccccc-cCCCccccccccccCCC--CCcchhhhhhHHhhhccc
Q 002500 313 KLSADEQMC-CNICRIPIIDYHRHCGN--CMYDLCLSCCQDLREAST 356 (915)
Q Consensus 313 ~~~~DERvy-CDnCkTSIvD~HRSC~~--CsydLCL~CC~ELR~g~~ 356 (915)
.+..|..+| ||.|+-.=.|=|--=|+ |.|.+|-.||-.|=+-..
T Consensus 73 nvF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~ 119 (140)
T PF05290_consen 73 NVFLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN 119 (140)
T ss_pred eeecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc
Confidence 334444888 99999998887776676 999999999999987664
No 105
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=25.27 E-value=50 Score=30.15 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=27.5
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccc--ccceeeccccCCCCHHH
Q 002500 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGLDFLFPESVGE 868 (915)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 868 (915)
+.|..=++.=..||++|||+|-+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 445566677789999999999999987777 566666655 5544433
No 106
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.79 E-value=28 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.882 Sum_probs=25.6
Q ss_pred eEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
--+|..|+ ..|=+.||.+|+.- -..-.||.||-
T Consensus 1488 skrC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1488 SKRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred ccccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 34788888 47999999999863 23468999983
No 107
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=24.75 E-value=41 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=38.7
Q ss_pred cCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCcc
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPF 845 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPH 845 (915)
.-|+|...-++...+=+.|.++||++.+.| +-||-|.|=+|-=.
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~K 56 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDFK 56 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCCC
Confidence 458999999999999999999999999966 78999999998643
No 108
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=61 Score=38.20 Aligned_cols=24 Identities=29% Similarity=0.811 Sum_probs=21.6
Q ss_pred CCeEEcccCCCccccHhHHhhhcCC
Q 002500 205 ERVVWCVKCDKRGYCDSCISTWYSD 229 (915)
Q Consensus 205 ~~~v~C~~C~r~~FC~~CL~~rY~e 229 (915)
..++.|++|+ -.||.-|...|.|.
T Consensus 291 ~~l~~CskCn-FaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 291 RALAICSKCN-FAFCTLCKLTWHGV 314 (445)
T ss_pred hhhhhhccCc-cHHHHHHHHhhcCC
Confidence 4689999999 79999999999993
No 109
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.92 E-value=32 Score=29.84 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=20.0
Q ss_pred CcccccccCCCccccccccccCC----CCCc
Q 002500 315 SADEQMCCNICRIPIIDYHRHCG----NCMY 341 (915)
Q Consensus 315 ~~DERvyCDnCkTSIvD~HRSC~----~Csy 341 (915)
+.|+.|.|.-|.|+ |||+|- .|++
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 46888999999998 899996 4665
No 110
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.89 E-value=47 Score=31.94 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred cCcccccccCCCcccccc-------ccccCCCCCcc
Q 002500 314 LSADEQMCCNICRIPIID-------YHRHCGNCMYD 342 (915)
Q Consensus 314 ~~~DERvyCDnCkTSIvD-------~HRSC~~Csyd 342 (915)
...+--+.|.+|....+. .|+.|++|.|-
T Consensus 16 ~klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 16 PKLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred cCCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 333456789999977776 79999999983
No 111
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=23.50 E-value=48 Score=36.33 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.8
Q ss_pred cCCCcCcceeeCHHHHHHHHhhhCccceEEEeecCceEEeCCCCccccccc
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNL 850 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNL 850 (915)
.|--|||.+|+-.-. =++-|.+=+|.=.+||.+|||.|.+|.-.+-
T Consensus 171 wtl~~dEi~YVLEGe-----~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp 216 (233)
T PRK15457 171 WTLNYDEIDMVLEGE-----LHVRHEGETMIAKAGDVMFIPKGSSIEFGTP 216 (233)
T ss_pred eeccceEEEEEEEeE-----EEEEECCEEEEeCCCcEEEECCCCeEEecCC
Confidence 455588888876653 2466788899999999999999999876443
No 112
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=23.48 E-value=61 Score=34.75 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=24.8
Q ss_pred hhCccceEEEeecCceEEeCCCCccccccccc
Q 002500 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
.+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 56 ~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 56 ALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 35566666777799999999999999875443
No 113
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.74 E-value=34 Score=39.38 Aligned_cols=32 Identities=31% Similarity=0.851 Sum_probs=23.4
Q ss_pred cCCCccccHhHHhhhcCCC-ChHHhhhcCCCCCC
Q 002500 212 KCDKRGYCDSCISTWYSDI-PLEELEKVCPACRG 244 (915)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~-~~edv~~~CP~Crg 244 (915)
+|. -.||..||.+|=.-. ....+...||+||.
T Consensus 186 nC~-H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv 218 (344)
T KOG1039|consen 186 NCN-HSFCLNCIRKWRQATQFESKTSKSCPFCRV 218 (344)
T ss_pred Ccc-hhhhhcHhHhhhhhhccccccccCCCcccC
Confidence 366 589999999996321 13456789999996
No 114
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.02 E-value=32 Score=32.82 Aligned_cols=14 Identities=43% Similarity=1.533 Sum_probs=12.4
Q ss_pred cccHhHHhhhcCCC
Q 002500 217 GYCDSCISTWYSDI 230 (915)
Q Consensus 217 ~FC~~CL~~rY~e~ 230 (915)
.||..||.+||.+-
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999873
No 115
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=47 Score=37.05 Aligned_cols=47 Identities=28% Similarity=0.740 Sum_probs=34.3
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhh-hcCCCChHHhhhcCCCCCCcc
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCIST-WYSDIPLEELEKVCPACRGSC 246 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~-rY~e~~~edv~~~CP~Crg~C 246 (915)
+...|-=|--... ...|+-|+ ..||-.||.- |--.- -..||.||.-|
T Consensus 214 ~d~kC~lC~e~~~--~ps~t~Cg-HlFC~~Cl~~~~t~~k-----~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPE--VPSCTPCG-HLFCLSCLLISWTKKK-----YEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccC--Cccccccc-chhhHHHHHHHHHhhc-----cccCchhhhhc
Confidence 4567998886665 56788999 6999999977 43322 13699999754
No 116
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=21.86 E-value=32 Score=29.76 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=22.1
Q ss_pred cCCCCcccccccC--CCCeEEcccCCCccccHhHHhhhcC
Q 002500 191 TGGQICHQCRRND--RERVVWCVKCDKRGYCDSCISTWYS 228 (915)
Q Consensus 191 ~~~~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 228 (915)
.....|..|.++= ..+.-.|+.|+ ..||..|..++-.
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG-~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCG-RVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT---EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCC-CEECCchhCCEEc
Confidence 3567899999776 35688999999 5999999987765
No 117
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.66 E-value=66 Score=36.67 Aligned_cols=49 Identities=24% Similarity=0.677 Sum_probs=35.1
Q ss_pred CcCCCCcccccccC-CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCC
Q 002500 190 DTGGQICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (915)
Q Consensus 190 k~~~~~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (915)
...|--|-=|.-.- +...++-.=|+ ..|=.+|+.+|-.+ ..-+||+||.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~~-----y~~~CPvCrt 369 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLLG-----YSNKCPVCRT 369 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-ceechhHHHHHHhh-----hcccCCccCC
Confidence 35778888898654 33445555577 58999999999542 3459999985
No 118
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=21.54 E-value=49 Score=29.12 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=19.7
Q ss_pred eecCcCCCCchhHHHHHHhhhh
Q 002500 32 RCTAMSMPDKTVCEKHYIQAKR 53 (915)
Q Consensus 32 rc~~~~~~~~~~ce~h~~~~~~ 53 (915)
.|+.++||..+||-+|+..-++
T Consensus 8 ~C~~~~lp~~~yC~~HIl~D~~ 29 (65)
T PF13891_consen 8 GCSQPALPGSKYCIRHILEDPN 29 (65)
T ss_pred CcCcccCchhhHHHHHhccCCC
Confidence 5999999999999999987655
No 119
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.53 E-value=45 Score=25.05 Aligned_cols=26 Identities=35% Similarity=1.073 Sum_probs=20.9
Q ss_pred cCCCccccccc-cccCCCCCcchhhhh
Q 002500 322 CNICRIPIIDY-HRHCGNCMYDLCLSC 347 (915)
Q Consensus 322 CDnCkTSIvD~-HRSC~~CsydLCL~C 347 (915)
|+.|...|-.+ -=+|..|.|.|-+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 77888888887 778888888887776
No 120
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=21.40 E-value=44 Score=38.72 Aligned_cols=53 Identities=21% Similarity=0.637 Sum_probs=35.1
Q ss_pred CCCCcccccccCCCCe------------------EEcccCC-CccccHhHHhhhcCCCChHHh--------hhcCCCCCC
Q 002500 192 GGQICHQCRRNDRERV------------------VWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRG 244 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~------------------v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Crg 244 (915)
....|--|.+....-+ ..|..|- |-+.|..|+.+||--- ++.. +-.||.||.
T Consensus 270 e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasr-Qd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 270 ELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASR-QDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred ccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhc-CCCCChhhhhcCCCCCCCCcc
Confidence 5566777776665322 2566665 5789999999999742 2221 358999997
Q ss_pred c
Q 002500 245 S 245 (915)
Q Consensus 245 ~ 245 (915)
.
T Consensus 349 ~ 349 (358)
T PF10272_consen 349 K 349 (358)
T ss_pred c
Confidence 4
No 121
>PRK13503 transcriptional activator RhaS; Provisional
Probab=21.11 E-value=51 Score=35.08 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.3
Q ss_pred hCccceEEEeecCceEEeCCCCccccccccc
Q 002500 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (915)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (915)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3344445555789999999999998877665
No 122
>PF14369 zf-RING_3: zinc-finger
Probab=21.00 E-value=42 Score=26.42 Aligned_cols=21 Identities=43% Similarity=0.882 Sum_probs=12.1
Q ss_pred CCcccccccCC-----CCeEEcccCC
Q 002500 194 QICHQCRRNDR-----ERVVWCVKCD 214 (915)
Q Consensus 194 ~~CHQCrqkt~-----~~~v~C~~C~ 214 (915)
..||||++.-. ...+.|..|+
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~ 28 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCH 28 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCC
Confidence 45888886542 1233466666
No 123
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=20.75 E-value=50 Score=32.08 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.6
Q ss_pred ccccCCCcc--ccccccccCCCCC
Q 002500 319 QMCCNICRI--PIIDYHRHCGNCM 340 (915)
Q Consensus 319 RvyCDnCkT--SIvD~HRSC~~Cs 340 (915)
+.+|+.|.. ++-+++-.||+|.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCC
Confidence 689999975 5556777799997
No 124
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=44 Score=38.64 Aligned_cols=58 Identities=26% Similarity=0.450 Sum_probs=36.4
Q ss_pred CCCCcccccccCCCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCCCCccccccccccCc
Q 002500 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADN 256 (915)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g 256 (915)
...+|--|.--=... +.=..|. .+||..||..-.-. -...||-||..|--+.=|+.+.
T Consensus 42 ~~v~c~icl~llk~t-mttkeCl-hrfc~~ci~~a~r~-----gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT-MTTKECL-HRFCFDCIWKALRS-----GNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhccHHHHHHHHhh-cccHHHH-HHHHHHHHHHHHHh-----cCCCCchHHhhccccccCCCCc
Confidence 556788776322111 1112466 69999999764321 2358999999887777666664
No 125
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.67 E-value=73 Score=32.86 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=15.9
Q ss_pred ccceEEEeecCceEEeCCCCc
Q 002500 824 VEPWSFEQHLGEAVFIPAGCP 844 (915)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCP 844 (915)
+++=++.=+.||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 567899999999999999964
No 126
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK13501 transcriptional activator RhaR; Provisional
Probab=20.28 E-value=59 Score=35.22 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=24.2
Q ss_pred hCccceEEEeecCceEEeCCCCccccccc
Q 002500 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNL 850 (915)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNL 850 (915)
+-|.+-++.=..||+||||+|.+|++..-
T Consensus 51 ~~i~~~~~~l~~g~~~~I~p~~~H~~~~~ 79 (290)
T PRK13501 51 HVLNDHPYRITCGDVFYIQAADHHSYESV 79 (290)
T ss_pred EEECCeeeeecCCeEEEEcCCCccccccc
Confidence 55677777788999999999999997643
No 128
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.15 E-value=18 Score=35.07 Aligned_cols=51 Identities=25% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCccCcCCCCcccccccC---CCCeEEcccCCCccccHhHHhhhcCCCChHHhhhcCCCC
Q 002500 186 NSSEDTGGQICHQCRRND---RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (915)
Q Consensus 186 ~~~~k~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (915)
+.+.......|.-|.++. .+....|..|+ ..+|..|-.. ...+..|.|-+|
T Consensus 47 ~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~-----~~~~~~WlC~vC 100 (118)
T PF02318_consen 47 GNSQKYGERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY-----SKKEPIWLCKVC 100 (118)
T ss_dssp SCSTTHCCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE-----TSSSCCEEEHHH
T ss_pred ccccccCCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc-----CCCCCCEEChhh
Done!