Query 002500
Match_columns 915
No_of_seqs 272 out of 360
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 16:16:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002500.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1220-1224//hhsearch_pdb/002500hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 1.0 1 1 1019.8 15.4 353 484-910 20-375 (392)
2 3kv5_D JMJC domain-containing 1.0 1 1 101.1 14.9 265 488-912 148-419 (488)
3 3k2o_A Bifunctional arginine d 1.0 1 1 100.3 13.0 245 487-877 56-306 (336)
4 4gjz_A Lysine-specific demethy 1.0 1 1 99.4 5.7 135 487-664 10-151 (235)
5 2yu1_A JMJC domain-containing 1.0 1 1 97.2 17.5 270 490-907 65-344 (451)
6 3kv4_A PHD finger protein 8; e 1.0 1 1 95.1 16.1 266 488-913 113-385 (447)
7 3k3o_A PHF8, PHD finger protei 1.0 1 1 92.1 16.2 266 488-913 29-301 (371)
8 3kv9_A JMJC domain-containing 1.0 1 1 91.3 16.3 265 488-913 57-329 (397)
9 3d8c_A Hypoxia-inducible facto 1.0 1 1 89.9 3.6 41 823-863 257-298 (349)
10 3pua_A GRC5, PHD finger protei 1.0 1 1 89.8 17.1 264 488-911 56-326 (392)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=1019.85 Aligned_cols=353 Identities=27% Similarity=0.467 Sum_probs=311.9
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCC
Q ss_conf 71007879996623998898214567988887702235455320012221223724797279997141221011123457
Q 002500 484 RSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSE 563 (915)
Q Consensus 484 ~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~~ 563 (915)
+.+|+.|||+||++|||||||||++++++++|+|++||++|++ + .+++|||++|++++|++++||+||++
T Consensus 20 ~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd---~-------~~~lidC~~~~~~~i~v~~Ff~Gf~~ 89 (392)
T 2ypd_A 20 NSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD---H-------QADLLNCKDSIISNANVKEFWDGFEE 89 (392)
T ss_dssp CTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT---S-------CCCCEETTTCCBCSCCHHHHHHTSSB
T ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHCC---C-------EEEEEECCCCCCCCCCHHHHHHHCCC
T ss_conf 7644799999983799689962223376784278999887167---4-------11144379984115768998654246
Q ss_pred CCCC---CCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 6102---8998213651699993135786410516787359962235789863100014999889999997200034542
Q 002500 564 GRVR---EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTY 640 (915)
Q Consensus 564 gr~~---~~gwp~mLKLKDWPps~~Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ 640 (915)
++.+ .+|||+|||||||||+++|+++||+||+|||++||||||||| +|+||||++||+++++||||||||||||++
T Consensus 90 ~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p-~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~ 168 (392)
T 2ypd_A 90 VSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNP-EGKFNLASHLPGFFVRPDLGPRLCSAYGVV 168 (392)
T ss_dssp GGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHST-TCTTCCTTTSCGGGCC---CCEEEEECCST
T ss_pred CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCC-CCCCHHHHHCCCCCCCCCCCCCHHHHCCCC
T ss_conf 4457767789801566468997577888737778999970996675089-741049986878777788775001421861
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 12468998310134423200000003445689840466310100000123579987667999989877899888820000
Q 002500 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (915)
Q Consensus 641 eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 720 (915)
+++|+++|||||||||||||||||||++++....... .+.+ +.+++++ .+....+
T Consensus 169 ~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~~~~-~~~l--------------~~~~~~~----------~d~~~~~ 223 (392)
T 2ypd_A 169 AAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSK-AGIL--------------KKFEEED----------LDDILRK 223 (392)
T ss_dssp TTTCTTCCSEEEEECSSEEEEEEEEEECCBCTTCCCH-HHHH--------------HHHHTSC----------CCHHHHH
T ss_pred HHCCCCCCCCEEEEEHHHHHHHHHEECCCCCCCCCHH-HHHH--------------HHHHHCC----------CCHHHHH
T ss_conf 2105677734000025655555401202476542013-5665--------------4311202----------2077765
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23454024542048755652100000012578878888999961556506899679999999988650999999888535
Q 002500 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (915)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (915)
+ . ....+.+||+||||||||++|||+||++|++||+... ..+.
T Consensus 224 r----------------------------~-----~~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~~----~~~~ 266 (392)
T 2ypd_A 224 R----------------------------L-----KDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEV----LPEH 266 (392)
T ss_dssp H----------------------------H-----TCTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC----------C
T ss_pred H----------------------------C-----CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCC----CCCC
T ss_conf 3----------------------------1-----5789999845654577669999999999988649876----6777
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77768622209988999886619622389840486578579993112356664112013359877899999999971299
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp 880 (915)
||||||+||||.+||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+||
T Consensus 267 dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~ 346 (392)
T 2ypd_A 267 DPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLK 346 (392)
T ss_dssp CHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC----
T ss_pred CCCCCCCEEECHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 86768887866999999987519704899973787799669978887520221457652268421999999789986251
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 530123312312023677689999999988
Q 002500 881 NDHEAKLQVLEVGKISLYAASSAIKEVQKL 910 (915)
Q Consensus 881 ~~H~aK~d~LeVkKm~lya~~~avke~~~l 910 (915)
+|++|+||||||+|++||+..||++|++.
T Consensus 347 -~~~~~edkLqvk~m~~~av~~av~~l~~~ 375 (392)
T 2ypd_A 347 -EEINYDDKLQVKNILYHAVKEMVRALKIH 375 (392)
T ss_dssp ------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -10036889999999999999999998863
No 2
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=101.10 Aligned_cols=265 Identities=16% Similarity=0.247 Sum_probs=159.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 787999662399889821456798888-----770223545532001222122372479727999714122101112345
Q 002500 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (915)
Q Consensus 488 l~hFQ~hW~kGePVIVr~Vl~~~s~ls-----W~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~ 562 (915)
...|++++ -..||||.+.-. .|+- |+-..+-.-+ ..+..|.++||.....+++++++|.+=|.
T Consensus 148 ~~~~~~~~-~~~Pvli~~~~~--lg~~~P~~~~t~~~v~~~~---------G~d~~V~V~Dv~~Q~~~~m~l~~yi~y~~ 215 (488)
T 3kv5_D 148 QRYLEKHG-FDVPIMVPKLDD--LGLRLPSPTFSVMDVERYV---------GGDKVIDVIDVARQADSKMTLHNYVKYFM 215 (488)
T ss_dssp HHHHHHHC-SCSCEEECSCTT--TCCBCCCTTCCHHHHHHHH---------CTTCEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHCC-CCCCEEEECCCC--CCCCCCCCCCCHHHHHHHH---------CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99997537-887779835777--6776898878699999972---------89945643533766461655999999984
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCHHCCCCC
Q ss_conf 7610289982136516999931357864105167873599622357898631000149998--89999997200034542
Q 002500 563 EGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTY 640 (915)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~ 640 (915)
.. .+. .+|-+-|+.-+.. ++......|+|.. ....+|.. .|.. .-+|++. .|+-
T Consensus 216 ~~--~r~---~~~nv~slefs~~----------~L~~~~~~P~~~~-~~d~~~~~--wp~~~~~~rP~~~--r~~~---- 271 (488)
T 3kv5_D 216 NP--NRP---KVLNVISLEFSDT----------KMSELVEVPDIAK-KLSWVENY--WPDDSVFPKPFVQ--KYCL---- 271 (488)
T ss_dssp SS--SCS---SCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHHH--CCTTCSSCCCCCS--CEEE----
T ss_pred CC--CCC---CCCCCCCCCCCCC----------HHHCCCCCCHHHH-HHCHHHHC--CCCCCCCCCCCCC--EEEE----
T ss_conf 23--876---6301364200652----------2320577970352-20334412--7631134675510--3899----
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 12468998310134423200000003445689840466310100000123579987667999989877899888820000
Q 002500 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (915)
Q Consensus 641 eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 720 (915)
.|...|.|.||.|....- +..++ +
T Consensus 272 --mG~~gS~T~~H~D~~~t~-~w~~v--v--------------------------------------------------- 295 (488)
T 3kv5_D 272 --MGVQDSYTDFHIDFGGTS-VWYHV--L--------------------------------------------------- 295 (488)
T ss_dssp --EECTTCEEEEECCGGGCE-EEEEE--E---------------------------------------------------
T ss_pred --ECCCCCCCCEEECCCCCC-EEEEC--C---------------------------------------------------
T ss_conf --828998898678899982-65541--6---------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23454024542048755652100000012578878888999961556506899679999999988650999999888535
Q 002500 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (915)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (915)
.|-=.|-+|++.+.+ +.-| ..+.. .
T Consensus 296 ----------------------------------------~G~K~w~L~PPt~~~-~~~y--~~~~~---~--------- 320 (488)
T 3kv5_D 296 ----------------------------------------WGEKIFYLIKPTDEN-LARY--ESWSS---S--------- 320 (488)
T ss_dssp ----------------------------------------EEEEEEEEECCCHHH-HHHH--HHHHT---C---------
T ss_pred ----------------------------------------CEEEEEEEECCCCCC-CCCC--CCCCC---C---------
T ss_conf ----------------------------------------705899996986246-3435--54455---7---------
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77768622209988999886619622389840486578579993112356664112013359877899999999971299
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp 880 (915)
.+. ...||-+ ...+++.++|.+||++|||+|..|||.||..||-|.-.|++..|+...++..+==+.|.
T Consensus 321 ~~~-~~~~~~~----------~~~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~ 389 (488)
T 3kv5_D 321 VTQ-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLK 389 (488)
T ss_dssp SSG-GGSCGGG----------SSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 762-1334311----------35533898617887787679964886278884897665377567999999999998508
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 53012331231202367768999999998823
Q 002500 881 NDHEAKLQVLEVGKISLYAASSAIKEVQKLVL 912 (915)
Q Consensus 881 ~~H~aK~d~LeVkKm~lya~~~avke~~~l~~ 912 (915)
. ..|-....-.+|+||.+..-++.++.+.-
T Consensus 390 ~--~~~~~~p~f~~~~w~~~~~~l~~~~~~~~ 419 (488)
T 3kv5_D 390 T--PDLFKFPFFEAICWFVAKNLLETLKELRE 419 (488)
T ss_dssp C--CTTSSCTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8--63364736899999999999999999875
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=1.00 E-value=1 Score=100.28 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=140.3
Q ss_pred HHHHHHHHHH-CCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCC
Q ss_conf 0787999662-3998898214567988-8877022354553200122212237247972799971412210111234576
Q 002500 487 GIGNFRKHWV-KGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEG 564 (915)
Q Consensus 487 ~l~hFQ~hW~-kGePVIVr~Vl~~~s~-lsW~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~~g 564 (915)
....|.+.+. .+.|||++|+.+.-.. ..|.+.++-..++ +..|.+-.-.++..+.+.+++|+.-+...
T Consensus 56 S~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~G----------~~~V~v~~~~~~~~~~m~~~~fl~~~~~~ 125 (336)
T 3k2o_A 56 SVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYR----------NQKFKCGEDNDGYSVKMKMKYYIEYMEST 125 (336)
T ss_dssp CHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHST----------TCEEEEEECTTSCEEEEEHHHHHHHHHHC
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC----------CCEEEEEECCCCCEEEECHHHHHHHHHHC
T ss_conf 99999998436698889848867884676625999999819----------92489986378743442199999999704
Q ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 10289982136516999931357864105167873599622357898631000149998899999972000345421246
Q 002500 565 RVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELD 644 (915)
Q Consensus 565 r~~~~gwp~mLKLKDWPps~~Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eelG 644 (915)
..+.| |=|.||. |.+. ..++++.....+|+|.- ...|+++ +. ...|| -+++= .|
T Consensus 126 ---~~~~~--lYL~d~~----~~e~--~~~p~L~~dy~~P~~f~--~d~~~~~---~~-~~~p~---~~~~~------~G 179 (336)
T 3k2o_A 126 ---RDDSP--LYIFDSS----YGEH--PKRRKLLEDYKVPKFFT--DDLFQYA---GE-KRRPP---YRWFV------MG 179 (336)
T ss_dssp ---CCSSC--CCEEESC----GGGS--TTGGGGGGGCCCCGGGC--CCGGGGG---CT-TTSCC---CEEEE------EE
T ss_pred ---CCCCC--CEEECCC----CCCC--CCCHHHHHHCCCCCCCC--CCHHHHC---CC-CCCCC---CEEEE------EC
T ss_conf ---77787--1575154----4432--12355797657884433--1055426---53-34877---20799------77
Q ss_pred CCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 89983101344232000000034456898404663101000001235799876679999898778998888200002345
Q 002500 645 RGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSAT 724 (915)
Q Consensus 645 rGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 724 (915)
.+.|.|.||.|....-|+++.+.
T Consensus 180 ~~gs~t~~H~D~~~~~~~~~~v~--------------------------------------------------------- 202 (336)
T 3k2o_A 180 PPRSGTGIHIDPLGTSAWNALVQ--------------------------------------------------------- 202 (336)
T ss_dssp CTTCEEEEECCGGGCEEEEEEEE---------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCEEEEEEE---------------------------------------------------------
T ss_conf 88766774448876641469974---------------------------------------------------------
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCC
Q ss_conf 4024542048755652100000012578878888999961556506899679999999988650-999999888535777
Q 002500 725 DEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDF-GRPDGVTNDFVTHPL 803 (915)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef-~~~~~~~~~~v~hPI 803 (915)
|.=.|-+|.+.+.+.|-.+ .... +.... . .++
T Consensus 203 -------------------------------------G~K~~~L~pP~~~~~ly~~----~~~~~~~~~~---~-~~~-- 235 (336)
T 3k2o_A 203 -------------------------------------GHKRWCLFPTSTPRELIKV----TRDEGGNQQD---E-AIT-- 235 (336)
T ss_dssp -------------------------------------SCEEEEEECTTSCHHHHCC----CHHHHGGGTT---C-HHH--
T ss_pred -------------------------------------EEEEEEEECCCCCHHCCCC----CCCCCCCCCC---C-HHH--
T ss_conf -------------------------------------1079999589852310567----6001587753---1-145--
Q ss_pred CCCCEEECHHHHHHHH-HHH--CCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 6862220998899988-661--9622389840486578579993112356664112013359877899999999971
Q 002500 804 YGEVVYLNGDHKRKLK-EEF--GVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIR 877 (915)
Q Consensus 804 HDQ~fYLt~~hk~kLk-EEy--GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR 877 (915)
|+++.. -++. ++| ...++.++|.+||++|||+|-.|||+|+..||-|...|+++.|+...+++|-+-|
T Consensus 236 ----w~~~~~--P~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~~ 306 (336)
T 3k2o_A 236 ----WFNVIY--PRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGR 306 (336)
T ss_dssp ----HHHHTG--GGGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHHC
T ss_pred ----HHHHHC--CCHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf ----554338--30121023345750799988998898589971777638986999754278201999999987408
No 4
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=1.00 E-value=1 Score=99.35 Aligned_cols=135 Identities=21% Similarity=0.297 Sum_probs=69.8
Q ss_pred HHHHH-HHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECC-----CCCEEECCCCCCCC
Q ss_conf 07879-996623998898214567988-887702235455320012221223724797279-----99714122101112
Q 002500 487 GIGNF-RKHWVKGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCL-----DWSEVDIELGEFIK 559 (915)
Q Consensus 487 ~l~hF-Q~hW~kGePVIVr~Vl~~~s~-lsW~P~~mwra~~e~~~~k~~~e~~~vkaiDCl-----d~~ev~i~i~qFf~ 559 (915)
..+.| +++|.+++|||++|+.+.-.. ..|++.++-..+++ ..|.+-.+. ++....+.+.+|..
T Consensus 10 S~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~----------~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (235)
T 4gjz_A 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGC----------RTVPVEVGSRYTDEEWSQTLMTVNEFIS 79 (235)
T ss_dssp CHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTT----------SEEEEEEC-------CEEEEEEHHHHHH
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCC----------CEEEEEECCCCCCCCCCEEECCHHHHHH
T ss_conf 999999987427986899288768831122799999987399----------7687872576557765356556999999
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 34576102899821365169999313578641051678735996223578986310001499988999999720003454
Q 002500 560 GYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGT 639 (915)
Q Consensus 560 Gy~~gr~~~~gwp~mLKLKDWPps~~Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~ 639 (915)
.+.... ....+-+.++. +..+.+++..-+.+|.|.....+.. .+..+-+|
T Consensus 80 ~~~~~~-----~~~~~y~~~~~--------~~~~~~~l~~d~~~p~~~~~~~~~~------------~~~~~~~w----- 129 (235)
T 4gjz_A 80 KYIVNE-----PRDVGYLAQHQ--------LFDQIPELKQDISIPDYCSLGDGEE------------EEITINAW----- 129 (235)
T ss_dssp HHTSSC-----CSSCEEEEEEC--------HHHHCHHHHTTCCCCGGGGGSSSCG------------GGCEEEEE-----
T ss_pred HHHHCC-----CCCCCEEEHHH--------HHHHHHHHHHHHCCCCCCCCCCCCC------------CCCCEEEE-----
T ss_conf 986267-----76653110223--------5441188887543785112455555------------76643799-----
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHE
Q ss_conf 2124689983101344232000000
Q 002500 640 YEELDRGNSVKNLHFNMPDMVYLLV 664 (915)
Q Consensus 640 ~eelGrGdSvTkLH~DmSDAVNIL~ 664 (915)
+|.+.|+|.||.|..|..++++
T Consensus 130 ---iG~~gs~t~~H~D~~~n~~~qv 151 (235)
T 4gjz_A 130 ---FGPQGTISPLHQDPQQNFLVQV 151 (235)
T ss_dssp ---EECTTCEEEEECCSSEEEEEEE
T ss_pred ---EECCCCCCEEEECCCCCEEEEE
T ss_conf ---8479977436215665669999
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=1.00 E-value=1 Score=97.18 Aligned_cols=270 Identities=11% Similarity=0.095 Sum_probs=149.6
Q ss_pred HHHHHHHCCCCEEEECCCCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCC
Q ss_conf 7999662399889821456798----888770223545532001222122372479727999714122101112345761
Q 002500 490 NFRKHWVKGEPVIVKQVCDSSS----MSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGR 565 (915)
Q Consensus 490 hFQ~hW~kGePVIVr~Vl~~~s----~lsW~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~~gr 565 (915)
.|.+.=....|||++|+ +.-. ...|+..++-..+++ +..|.++||.+..-+++++++|.+-+....
T Consensus 65 EF~~~~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~~~G~---------d~~V~V~D~~~q~~~~M~l~eyidy~~~~~ 134 (451)
T 2yu1_A 65 EYIQRGGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKMCVGS---------RRMVDVMDVNTQKGIEMTMAQWTRYYETPE 134 (451)
T ss_dssp HHHHHHCSCSCEEESSC-TTTTCBCCCTTCCHHHHHHHTCT---------TCCCCCEETTSSCCTTCCHHHHHHHHTSCT
T ss_pred HHHHHCCCCCCEEECCC-CCCCCCCCCCCCCHHHHHHHCCC---------CCEEEEEECCCCCCEEEEHHHHHHHHHHCC
T ss_conf 99985389975898157-67887277678999999997399---------716755774778544535999999985141
Q ss_pred CCCCCCCEEEEECCCCCCHHH-HHH--HHHCCHHH--HHCCCCCCCCCCCC-CCCHHCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 028998213651699993135-786--41051678--73599622357898-6310001499988999999720003454
Q 002500 566 VREDGWPEMLKLKDWPSPSAS-EEF--LLYHKPEF--ISKLPLLEYIHSRL-GFLNVAAKLPHYSLQNDVGPKIYMSYGT 639 (915)
Q Consensus 566 ~~~~gwp~mLKLKDWPps~~F-ee~--LP~h~~ef--i~aLP~~EYt~pr~-G~LNLAskLP~~~lkPDLGPK~YIAYG~ 639 (915)
.. ..+ ++-+..|.=+..| +.. .|.-..++ +. ..|+++...+. -.+|... ..-.||.. .|+-
T Consensus 135 d~--r~~-LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~-~~~p~~l~~~~~d~f~~lg----e~~rP~~~--r~~~--- 201 (451)
T 2yu1_A 135 EE--REK-LYNVISLEFSHTRLENMVQRPSTVDFIDWVD-NMWPRHLKESQTESTNAIL----EMQYPKVQ--KYCL--- 201 (451)
T ss_dssp TT--CCS-CEEEEEECCTTSTTGGGCBCCHHHHHHCHHH-HHSCGGGCC---------------CCSCCCC--CEEE---
T ss_pred CC--CCC-HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCC-CCCCHHHHHHHHHHHHHCC----CCCCCCHH--EEEE---
T ss_conf 34--530-0000110136640010246734665431021-0274033210124543025----44588610--1799---
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 21246899831013442320000000344568984046631010000012357998766799998987789988882000
Q 002500 640 YEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHV 719 (915)
Q Consensus 640 ~eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 719 (915)
.|...|.|.+|.|....-+....+
T Consensus 202 ---mGp~gS~T~~H~D~~~ts~w~avi----------------------------------------------------- 225 (451)
T 2yu1_A 202 ---MSVRGCYTDFHVDFGGTSVWYHIH----------------------------------------------------- 225 (451)
T ss_dssp ---EECTTCEEEEECCGGGCEEEEEEE-----------------------------------------------------
T ss_pred ---ECCCCCCCCEEECCCCCCHHHHEE-----------------------------------------------------
T ss_conf ---805888799688999840423100-----------------------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 02345402454204875565210000001257887888899996155650689967999999998865099999988853
Q 002500 720 EKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFV 799 (915)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v 799 (915)
.|-=.|=+|++.+.+ +.-|- .+..- +
T Consensus 226 -----------------------------------------~GrK~w~L~PP~~~~-~~~y~--~~~~s------~---- 251 (451)
T 2yu1_A 226 -----------------------------------------QGGKVFWLIPPTAHN-LELYE--NWLLS------G---- 251 (451)
T ss_dssp -----------------------------------------ESCEEEEEECCCHHH-HHHHH--HHHHT------T----
T ss_pred -----------------------------------------CCEEEEEEECCCCCC-CCCCC--CCCCC------C----
T ss_conf -----------------------------------------443899996997655-33234--44446------5----
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 57776862220998899988661962238984048657857999311235666411201335987789999999997129
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCL 879 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~L 879 (915)
-.+..|| .++..+++.+++.+||++|||+|.-|||.||..||-|...|++.-|+...++.++-=+++
T Consensus 252 ---~q~~~~~----------p~~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~ 318 (451)
T 2yu1_A 252 ---SQGDIFL----------GDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRT 318 (451)
T ss_dssp ---CCSSSCH----------HHHSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred ---CCHHHHH----------CCCCCCCEEEEECCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf ---4015450----------001355469998887279867996489961787289964408852589999999998863
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9530123312312023677689999999
Q 002500 880 PNDHEAKLQVLEVGKISLYAASSAIKEV 907 (915)
Q Consensus 880 p~~H~aK~d~LeVkKm~lya~~~avke~ 907 (915)
... .|-.--....|+||++...++.+
T Consensus 319 ~v~--~~~~~p~f~~~~w~~~~~~~~~~ 344 (451)
T 2yu1_A 319 RVP--NKFRYPFYYEMCWYVLERYVYCI 344 (451)
T ss_dssp TCC--TTSSCTTHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 798--44538238999999999999997
No 6
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=95.14 Aligned_cols=266 Identities=14% Similarity=0.242 Sum_probs=158.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 787999662399889821456798888-----770223545532001222122372479727999714122101112345
Q 002500 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (915)
Q Consensus 488 l~hFQ~hW~kGePVIVr~Vl~~~s~ls-----W~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~ 562 (915)
...|+.+ +-+.||||.+.- ..|+- |+...+ .+.. ..+..|.+||+.+...+++++++|.+=|.
T Consensus 113 ~~~~~~~-~~~~Pvli~~~~--glgm~~P~~~~tv~~v----~~~~-----G~d~~V~ViDv~~Q~~~~M~l~~y~dy~~ 180 (447)
T 3kv4_A 113 VEFLEEN-SFSVPILVLKKD--GLGMTLPSPSFTVRDV----EHYV-----GSDKEIDVIDVTRQADCKMKLGDFVKYYY 180 (447)
T ss_dssp HHHHHHT-TSCSCEEESSCT--TSCCBCCCTTCCHHHH----HHHH-----CTTCEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHC-CCCCCEEEECCC--CCCCCCCCCCCCHHHH----HHHC-----CCCCEECCEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999864-799777981576--5577589865889999----9874-----99846744554767662053999999971
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCHHCCCCC
Q ss_conf 7610289982136516999931357864105167873599622357898631000149998--89999997200034542
Q 002500 563 EGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTY 640 (915)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~ 640 (915)
... ....|=|.||--+.. .+....-+|+|.. ..-.+|. ..|.. .-+||. ..|.-
T Consensus 181 ~~~-----r~~~lnv~d~efs~~----------~L~~~~~~P~~~~-~~D~~~~--lw~~~~~~~rP~v--~r~~~---- 236 (447)
T 3kv4_A 181 SGK-----REKVLNVISLEFSDT----------RLSNLVETPKIVR-KLSWVEN--LWPEECVFERPNV--QKYCL---- 236 (447)
T ss_dssp SSC-----CSSCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCSCTTSCCCCC--SCEEE----
T ss_pred CCC-----CCCCEEECCCCCCCC----------HHHHCCCCCCEEC-CCCHHHH--CCCCHHHCCCCCC--EEEEE----
T ss_conf 368-----777544214100552----------2440467884312-0005653--0650121159870--36999----
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 12468998310134423200000003445689840466310100000123579987667999989877899888820000
Q 002500 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (915)
Q Consensus 641 eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 720 (915)
.|...|.|.+|.|.... ++..++
T Consensus 237 --mG~~gS~T~~HiD~~~t-s~w~~v------------------------------------------------------ 259 (447)
T 3kv4_A 237 --MSVRDSYTDFHIDFGGT-SVWYHV------------------------------------------------------ 259 (447)
T ss_dssp --EECTTEEEEEECCGGGC-EEEEEE------------------------------------------------------
T ss_pred --EECCCCCCCEEECCCCC-CEEEEE------------------------------------------------------
T ss_conf --81899889866899998-345898------------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23454024542048755652100000012578878888999961556506899679999999988650999999888535
Q 002500 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (915)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (915)
-.|-=.|-+|++.+.+ |..|-. +. .
T Consensus 260 ---------------------------------------i~GrK~w~L~PPt~~n-l~~~~~--~~-~------------ 284 (447)
T 3kv4_A 260 ---------------------------------------LKGEKIFYLIRPTNAN-LTLFEC--WS-S------------ 284 (447)
T ss_dssp ---------------------------------------EESEEEEEEECCCHHH-HHHHHH--HH-T------------
T ss_pred ---------------------------------------EEEEEEEEEECCCCCC-CCCHHH--CC-C------------
T ss_conf ---------------------------------------6017999996987245-442011--13-5------------
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77768622209988999886619622389840486578579993112356664112013359877899999999971299
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp 880 (915)
.+..+..||-+ ...+++.++|.+||++|||+|..|||.|+..||-|..+|++..|+..-++..+-=+.+.
T Consensus 285 s~~~~~~~~~~----------~~~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~ 354 (447)
T 3kv4_A 285 SSNQNEMFFGD----------QVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS 354 (447)
T ss_dssp CSSGGGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHCCC----------CCCCEEEEEECCCCEEECCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 75302334055----------45643999988986786389976888637887998154346347999999999998607
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 530123312312023677689999999988239
Q 002500 881 NDHEAKLQVLEVGKISLYAASSAIKEVQKLVLD 913 (915)
Q Consensus 881 ~~H~aK~d~LeVkKm~lya~~~avke~~~l~~d 913 (915)
. ..|-..-.-.+|+||++...++.++.++-+
T Consensus 355 ~--~~~~~~p~f~~~~w~~~~~~~~~~~~~~~~ 385 (447)
T 3kv4_A 355 T--ADLFRFPNFETICWYVGKHILDIFRGLREN 385 (447)
T ss_dssp C--CGGGSCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9--742326687999999999999998878754
No 7
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=1.00 E-value=1 Score=92.08 Aligned_cols=266 Identities=15% Similarity=0.243 Sum_probs=155.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCC-----CCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 78799966239988982145679888-----8770223545532001222122372479727999714122101112345
Q 002500 488 IGNFRKHWVKGEPVIVKQVCDSSSMS-----IWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (915)
Q Consensus 488 l~hFQ~hW~kGePVIVr~Vl~~~s~l-----sW~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~ 562 (915)
...||.+ +-..||||.+.- ..|+ .|+-..+- +.. ..+..|.++||.+...+.+++++|.+=|.
T Consensus 29 ~~y~~~~-~~~~Pvli~~~~--glg~~~P~~~~tv~~v~----~~v-----G~d~~V~ViDv~~Q~~~~M~l~~y~dY~~ 96 (371)
T 3k3o_A 29 VEFLEEN-SFSVPILVLKKD--GLGMTLPSPSFTVRDVE----HYV-----GSDKEIDVIDVTRQADCKMKLGDFVKYYY 96 (371)
T ss_dssp HHHHHHH-TTCSCEEESSCT--TSCCBCCCTTCCHHHHH----HHH-----CC-CEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred HHHHHHC-CCCCCEEEECCC--CCCCCCCCCCCCHHHHH----HHC-----CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999864-899887981676--56786898879999999----874-----99845731443767774244999999972
Q ss_pred CCCCCCCCCCEEEEECCCCCCHH-HHHHHHHCCHHHHHCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 76102899821365169999313-57864105167873599-62235789863100014999889999997200034542
Q 002500 563 EGRVREDGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLP-LLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTY 640 (915)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~-Fee~LP~h~~efi~aLP-~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ 640 (915)
... ....|=+.||--+.. +.+ -...+++..-+- +..|- |..+. .-+||. ..|+-
T Consensus 97 ~~~-----re~~lnv~d~efs~~~L~~--~~~~P~~~~d~d~~~~~w-p~~~~----------~~rP~~--~r~l~---- 152 (371)
T 3k3o_A 97 SGK-----REKVLNVISLEFSDTRLSN--LVETPKIVRKLSWVENLW-PEECV----------FERPNV--QKYCL---- 152 (371)
T ss_dssp CTT-----CCSCEEEEEEECTTSGGGG--TCBCCHHHHHHCHHHHHS-CSSCS----------SCCCCC--SCEEE----
T ss_pred CCC-----CCCCEEEECHHCCCHHHHC--CCCCCCHHHHHHHHHHCC-CHHHH----------CCCCCC--EEEEE----
T ss_conf 268-----8875365131006503204--645872241200666408-70121----------049970--36999----
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 12468998310134423200000003445689840466310100000123579987667999989877899888820000
Q 002500 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (915)
Q Consensus 641 eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 720 (915)
.|...|.|.+|.|.... ++..++
T Consensus 153 --mGp~gS~T~~HiD~~gt-s~w~~v------------------------------------------------------ 175 (371)
T 3k3o_A 153 --MSVRDSYTDFHIDFGGT-SVWYHV------------------------------------------------------ 175 (371)
T ss_dssp --EECTTEEEEEECCGGGC-EEEEEE------------------------------------------------------
T ss_pred --ECCCCCCCCEEECCCCC-CEEEEE------------------------------------------------------
T ss_conf --80899889867889998-434788------------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23454024542048755652100000012578878888999961556506899679999999988650999999888535
Q 002500 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (915)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (915)
-.|-=.|-+|++.+.+ +.-|- .+.. .
T Consensus 176 ---------------------------------------v~GrK~w~L~PPt~~n-l~~y~--~~~~--s---------- 201 (371)
T 3k3o_A 176 ---------------------------------------LKGEKIFYLIRPTNAN-LTLFE--CWSS--S---------- 201 (371)
T ss_dssp ---------------------------------------EEEEEEEEEECCCHHH-HHHHH--HHHT--S----------
T ss_pred ---------------------------------------EEEEEEEEEECCCCCC-CCCCC--CCCC--C----------
T ss_conf ---------------------------------------6457999997977024-45454--4556--7----------
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77768622209988999886619622389840486578579993112356664112013359877899999999971299
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp 880 (915)
+-.+..||-+ ...+++.++|.+||++|||+|..|||.|+..||-|.-+|++..|+...++..+-=+.+.
T Consensus 202 -~~~~e~~~~~----------~~~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~ 270 (371)
T 3k3o_A 202 -SNQNEMFFGD----------QVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS 270 (371)
T ss_dssp -TTGGGSCGGG----------TSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC
T ss_pred -CCCCHHHCCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -7600344066----------56744999988885787079975987568886998875466342899999987997539
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 530123312312023677689999999988239
Q 002500 881 NDHEAKLQVLEVGKISLYAASSAIKEVQKLVLD 913 (915)
Q Consensus 881 ~~H~aK~d~LeVkKm~lya~~~avke~~~l~~d 913 (915)
. ..|-.--.-.+|+||++...++.++.+.-+
T Consensus 271 ~--~~~f~fp~F~~~~w~~~~~~~~~~~~~~~~ 301 (371)
T 3k3o_A 271 T--ADLFRFPNFETICWYVGKHILDIFRGLREN 301 (371)
T ss_dssp ------CCCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9--854426667988999999999999988865
No 8
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=1.00 E-value=1 Score=91.28 Aligned_cols=265 Identities=18% Similarity=0.286 Sum_probs=156.7
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 787999662399889821456798888-----770223545532001222122372479727999714122101112345
Q 002500 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (915)
Q Consensus 488 l~hFQ~hW~kGePVIVr~Vl~~~s~ls-----W~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~ 562 (915)
...|+.++ -..||||.+.-. .|.- |+-..+-. .. ..+..|.++||.+...+++++++|.+=|.
T Consensus 57 ~~y~~~~~-~~~Pvli~~~~g--lg~~~P~~~~tv~~v~~----~v-----G~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~ 124 (397)
T 3kv9_A 57 QRYLEKHG-FDVPIMVPKLDD--LGLRLPSPTFSVMDVER----YV-----GGDKVIDVIDVARQADSKMTLHNYVKYFM 124 (397)
T ss_dssp HHHHHHHC-SCSCEEESSCTT--SCCBCCCTTCCHHHHHH----HH-----TTTSEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHCC-CCCCEEEECCCC--CCCCCCCCCCCHHHHHH----HH-----CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99997548-987679816754--56758988888999999----82-----88846741114766574542999999972
Q ss_pred CCCCCCCCCCEEEEECCCCCCHH-HHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCC--CCCCCCCCCHHCCCC
Q ss_conf 76102899821365169999313-578641051678735996223578986310001499988--999999720003454
Q 002500 563 EGRVREDGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYS--LQNDVGPKIYMSYGT 639 (915)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~-Fee~LP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~--lkPDLGPK~YIAYG~ 639 (915)
... ....|-+-||--+.. ..+ ..+-++|.+-+- .+|. ..|+.. -+|+. +.|+-
T Consensus 125 ~~~-----r~~~lnvislefs~~~L~~--~~~~P~~v~d~D----------wv~~--~wp~~~~~~rP~v--~r~l~--- 180 (397)
T 3kv9_A 125 NPN-----RPKVLNVISLEFSDTKMSE--LVEVPDIAKKLS----------WVEN--YWPDDSVFPKPFV--QKYCL--- 180 (397)
T ss_dssp CSS-----CSSCEEEEEEECTTSGGGG--GCBCCHHHHHHC----------HHHH--HCCTTCSSCCCCC--SCEEE---
T ss_pred CCC-----CCCCCEECCHHHCCCHHCC--CCCCCCEEECCC----------HHHH--CCCCHHCCCCCCC--EEEEE---
T ss_conf 048-----8750200546225511035--767971320011----------6550--2871112578661--25999---
Q ss_pred CCCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 21246899831013442320000000344568984046631010000012357998766799998987789988882000
Q 002500 640 YEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHV 719 (915)
Q Consensus 640 ~eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 719 (915)
.|...|.|.+|.|....- +..++ +
T Consensus 181 ---mGp~gS~T~~HiD~~gts-~w~~v--v-------------------------------------------------- 204 (397)
T 3kv9_A 181 ---MGVQDSYTDFHIDFGGTS-VWYHV--L-------------------------------------------------- 204 (397)
T ss_dssp ---EECTTCEEEEECCGGGCE-EEEEE--E--------------------------------------------------
T ss_pred ---ECCCCCCCCEEECCCCCC-EEEEE--C--------------------------------------------------
T ss_conf ---818998898778899986-02451--4--------------------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 02345402454204875565210000001257887888899996155650689967999999998865099999988853
Q 002500 720 EKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFV 799 (915)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v 799 (915)
.|-=.|-+|++.+.+ +.-| ..+.. .
T Consensus 205 -----------------------------------------~GrK~w~L~PPt~~n-l~ly--~~~~~---s-------- 229 (397)
T 3kv9_A 205 -----------------------------------------WGEKIFYLIKPTDEN-LARY--ESWSS---S-------- 229 (397)
T ss_dssp -----------------------------------------EEEEEEEEECCCHHH-HHHH--HHHHT---S--------
T ss_pred -----------------------------------------CCEEEEEEECCCCCC-CCCC--CCCCC---C--------
T ss_conf -----------------------------------------705999996976134-1100--00255---7--------
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 57776862220998899988661962238984048657857999311235666411201335987789999999997129
Q 002500 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCL 879 (915)
Q Consensus 800 ~hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~L 879 (915)
.+. ...||-+ ...+++.++|.+||++|||+|..|+|.|+..+|-|..+|+++.|+...++..+-=+.+
T Consensus 230 -~~~-~e~~~~~----------~~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~ 297 (397)
T 3kv9_A 230 -VTQ-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRL 297 (397)
T ss_dssp -GGG-GGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHH
T ss_pred -CCC-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -772-0434124----------4574399997898889967998477028868589787135701089999999899761
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9530123312312023677689999999988239
Q 002500 880 PNDHEAKLQVLEVGKISLYAASSAIKEVQKLVLD 913 (915)
Q Consensus 880 p~~H~aK~d~LeVkKm~lya~~~avke~~~l~~d 913 (915)
.. ..|-+-..-.+|++|.+..-++.++++.-|
T Consensus 298 k~--~~~~~fp~F~~~~w~~a~~~l~~~~~~~~~ 329 (397)
T 3kv9_A 298 KT--PDLFKFPFFEAICWFVAKNLLETLKELRED 329 (397)
T ss_dssp TC--GGGGGSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88--855767068999999999999999988865
No 9
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=1.00 E-value=1 Score=89.90 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=36.7
Q ss_pred CCCCEEEEEECCCEEEECCCCCCCCCCCC-CCCEEECCCCCC
Q ss_conf 96223898404865785799931123566-641120133598
Q 002500 823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQ-STVQLGLDFLFP 863 (915)
Q Consensus 823 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSP 863 (915)
.+.++.+++.+||++|||+|-.|||+|+. .++.|++.|..+
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~ 298 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEECCCCCEEEEECCCCCCEEEEEEECC
T ss_conf 687189999998789988998088898688984899998808
No 10
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=1.00 E-value=1 Score=89.76 Aligned_cols=264 Identities=16% Similarity=0.224 Sum_probs=153.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 787999662399889821456798888-----770223545532001222122372479727999714122101112345
Q 002500 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (915)
Q Consensus 488 l~hFQ~hW~kGePVIVr~Vl~~~s~ls-----W~P~~mwra~~e~~~~k~~~e~~~vkaiDCld~~ev~i~i~qFf~Gy~ 562 (915)
...|+++ .-..||||.+.-. .|+- |+-..+ .+.. ..+..|.++|+.+...+.+++++|.+=|.
T Consensus 56 ~~yl~~~-g~~~Pvli~~~~g--lgm~~P~~~~tv~~v----~~~v-----G~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~ 123 (392)
T 3pua_A 56 LGYMEEH-GFTEPILVPKKDG--LGLAVPAPTFYVSDV----ENYV-----GPERSVDVTDVTKQKDCKMKLKEFVDYYY 123 (392)
T ss_dssp HHHHHHH-TTCSCEEESSCTT--TTCBCCCTTCCHHHH----HHHH-----CTTCEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred HHHHHHC-CCCCCEEEECCCC--CCCCCCCCCCCHHHH----HHHC-----CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999765-8986489827864--568589887999999----9873-----99817831343767575323999999986
Q ss_pred CCCCCCCCCCEEEEECCCCCCHH-HHHHHHHCCHHHHHCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf 76102899821365169999313-57864105167873599-62235789863100014999889999997200034542
Q 002500 563 EGRVREDGWPEMLKLKDWPSPSA-SEEFLLYHKPEFISKLP-LLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTY 640 (915)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~-Fee~LP~h~~efi~aLP-~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ 640 (915)
... + ...|=|-|+--+.. ..+ ..+.++|..-+- +..|- |..+. .-+||. ..|+-
T Consensus 124 ~~~--r---e~~lnv~dlefs~t~L~~--~~~~P~lv~d~d~v~~~w-p~~~~----------~~rP~v--~r~~~---- 179 (392)
T 3pua_A 124 STN--R---KRVLNVTNLEFSDTRMSS--FVEPPDIVKKLSWVENYW-PDDAL----------LAKPKV--TKYCL---- 179 (392)
T ss_dssp CSS--C---CSCEEEEEEECTTSGGGG--GCBCCHHHHHHCHHHHHS-CTTCS----------SCCCSC--SCEEE----
T ss_pred CCC--C---CCCEEEEECCCCCCHHHC--CCCCCHHHHHHHHHHHCC-CHHHH----------HCCCCC--EEEEE----
T ss_conf 058--8---755076301146421112--566830465530101106-42355----------338974--05999----
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 12468998310134423200000003445689840466310100000123579987667999989877899888820000
Q 002500 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (915)
Q Consensus 641 eelGrGdSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 720 (915)
.|...|.|.+|.|+... ++..|+
T Consensus 180 --mGp~gS~T~fHiD~~gT-s~w~~v------------------------------------------------------ 202 (392)
T 3pua_A 180 --ICVKDSYTDFHIDSGGA-SAWYHV------------------------------------------------------ 202 (392)
T ss_dssp --EECTTCEEEEECCGGGC-EEEEEE------------------------------------------------------
T ss_pred --EECCCCCCCEEECCCCC-CEEEEE------------------------------------------------------
T ss_conf --90898889875899997-143453------------------------------------------------------
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23454024542048755652100000012578878888999961556506899679999999988650999999888535
Q 002500 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (915)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (915)
-.|-=.|=+|++.+.+ +..|- .+. .. .
T Consensus 203 ---------------------------------------i~GrK~w~L~PPt~~n-l~~y~--~~~-~s-----~----- 229 (392)
T 3pua_A 203 ---------------------------------------LKGEKTFYLIRPASAN-ISLYE--RWR-SA-----S----- 229 (392)
T ss_dssp ---------------------------------------EEEEEEEEEECCCHHH-HHHHH--HHH-HS-----T-----
T ss_pred ---------------------------------------CCCEEEEEEECCCCCC-CCCHH--HCC-CC-----C-----
T ss_conf ---------------------------------------0526999997987323-23011--124-57-----5-----
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 77768622209988999886619622389840486578579993112356664112013359877899999999971299
Q 002500 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (915)
Q Consensus 801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp 880 (915)
+ ....||-+ ...+++.++|..||++|||+|..|||.|+..||-+..+|++..|+..-++..+-=+++.
T Consensus 230 -~-~~e~~~~~----------~~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~ 297 (392)
T 3pua_A 230 -N-HSEMFFAD----------QVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLK 297 (392)
T ss_dssp -T-GGGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred -C-HHHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -3-34445244----------46633899987886786179966998527888998673167250999999998898727
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5301233123120236776899999999882
Q 002500 881 NDHEAKLQVLEVGKISLYAASSAIKEVQKLV 911 (915)
Q Consensus 881 ~~H~aK~d~LeVkKm~lya~~~avke~~~l~ 911 (915)
. ..|-.--.-.+|+||++...++.++.+.
T Consensus 298 ~--~~~f~fp~F~~~~wy~~~~~l~~~~~~~ 326 (392)
T 3pua_A 298 L--GSLTQFPNFETACWYMGKHLLEAFKGSH 326 (392)
T ss_dssp C--CCSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8--7547488758879999999999987776
Done!