BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002502
(915 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/793 (45%), Positives = 520/793 (65%), Gaps = 17/793 (2%)
Query: 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS 62
++L+IK+ + RS+RVK +D HP+EPW+L +LYSG V IWNY++Q +S +VTE PVR+
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
KF+ARK W++ G+DD IRV+NYNT +KV FEAH DYIR +AVHPT PYVLS SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
+KLW+WE W Q FEGH H+VM V FNPKD +TFAS LDRT+K+W+LG PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 183 AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
Q +GVN VDY+ DKPY+IT SDD T K+WDYQTKSCV TLEGH NVS FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR--IVIGYDEGTIMVKI 299
PIII+GSEDGT++IW+++TY++E TLN GLER W I + R+ I G+D G ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 300 GREEPVASMDNSGKIIWA--KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQ 357
G +EP S+D GK++W+ K+ + + + EV E L L KELG+ D++PQ
Sbjct: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360
Query: 358 SLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVREXXXXXXXXXX 417
SL H+PNGRFV V GDGEY+IYTALAWRN++FG +FVW D
Sbjct: 361 SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420
Query: 418 NFQEKRSVR-PTFSA-ERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSG 475
NF+E S P SA +R++ G LL + S+ F+ F+DW L+RRIDV K++ W+D+G
Sbjct: 421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480
Query: 476 DLVAIAS------DTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529
+LV I + + S Y L +N+D ++G D +GV++AF++L+E +E + +G
Sbjct: 481 ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540
Query: 530 WVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589
WVGD FI+ ++ RLNY VGG+ + H + MYLLGYLA ++VYL D+E +V GY +
Sbjct: 541 WVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEIS 600
Query: 590 LSLIEYKTLVMRGDLERANE-ILPSIP-KEHHNSVARFLESRGMIEEAIEVATDPDYRFE 647
L ++E++TL +RG++E A E +LP++ K+ +ARFLE + EEA+ ++ D D +FE
Sbjct: 601 LEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE 660
Query: 648 LAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXX 707
LA+++G+L +A+++ T+ +E KW+ LG+ ++ ++A A D
Sbjct: 661 LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSF 720
Query: 708 XDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY--LPS 765
+ EG+ LA A+ GK N+AF ++ G ++ LL++S R EAA + +Y +
Sbjct: 721 NNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDN 780
Query: 766 KVSEIVAIWRKDL 778
+V++IV W+++L
Sbjct: 781 EVNDIVTKWKENL 793
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 630 bits (1625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/604 (49%), Positives = 409/604 (67%), Gaps = 13/604 (2%)
Query: 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS 62
++L+IK+ + RS+RVK +D HP+EPW+L +LYSG V +WNY++Q +S +VTE PVR+
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
KF+ARK W++ G+DD IRV+NYNT +KV FEAH DYIR +AVHPT PYVLS SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
+KLW+WE W Q FEGH H+VM V FNPKD +TFAS LDRT+K+W+LG PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 183 AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
Q +GVN VDY+ DKPY+IT SDD T K+WDYQTKSCV TLEGH NVS FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR--IVIGYDEGTIMVKI 299
PIII+GSEDGT++IW+++TY++E TLN GLER W I + R+ I G+D G ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 300 GREEPVASMDNSGKIIWA--KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQ 357
G +EP S+D GK++W+ K+ + + + EV E L L KELG+ D++PQ
Sbjct: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360
Query: 358 SLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVREXXXXXXXXXX 417
SL H+PNGRFV V GDGEY+IYTALAWRN++FG +FVW D
Sbjct: 361 SLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420
Query: 418 NFQEKRSVR-PTFSA-ERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSG 475
NF+E S P SA +R++ G LL + S+ F+ F+DW L+RRIDV K++ W+D+G
Sbjct: 421 NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNG 480
Query: 476 DLVAIAS------DTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529
+LV I + + S Y L +N+D ++G D +GV++AF++L+E +E + +G
Sbjct: 481 ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGK 540
Query: 530 WVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589
WVGD FI+ ++ RLNY VGG+ + H + MYLLGYLA ++VYL D+E +V GY +
Sbjct: 541 WVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEIS 600
Query: 590 LSLI 593
L ++
Sbjct: 601 LEVL 604
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 177/304 (58%), Positives = 227/304 (74%), Gaps = 3/304 (0%)
Query: 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS 62
++L+IK+ + RS+RVK +D HP+EPW+L +LYSG V +WNY++Q +S +VTE PVR+
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
KF+ARK W++ G+DD IRV+NYNT +KV FEAH DYIR +AVHPT PYVLS SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
+KLW+WE W Q FEGH H+VM V FNPKD +TFAS LDRT+K+W+LG PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 183 AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
Q +GVN VDY+ DKPY+IT SDD T K+WDYQTKSCV TLEGH NVS FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR--IVIGYDEGTIMVKI 299
PIII+GSEDGT++IW+++TY++E TLN GLER W I + R+ I G+D G ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 300 GREE 303
G +E
Sbjct: 301 GNDE 304
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 177/304 (58%), Positives = 227/304 (74%), Gaps = 3/304 (0%)
Query: 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS 62
++L+IK+ + RS+RVK +D HP+EPW+L +LYSG V +WNY++Q +S +VTE PVR+
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA 60
Query: 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
KF+ARK W++ G+DD IRV+NYNT +KV FEAH DYIR +AVHPT PYVLS SDD+
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
+KLW+WE W Q FEGH H+VM V FNPKD +TFAS LDRT+K+W+LG PNFTL
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 183 AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
Q +GVN VDY+ DKPY+IT SDD T K+WDYQTKSCV TLEGH NVS FHP L
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR--IVIGYDEGTIMVKI 299
PIII+GSEDGT++IW+++TY++E TLN GLER W I + R+ I G+D G ++ +
Sbjct: 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 300 GREE 303
G +E
Sbjct: 301 GNDE 304
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 20/308 (6%)
Query: 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA 67
K L+ V V HP ++++ T+ +W+Y++ ++ + V+ F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
+ + + + DM I+++++ + ++ H + V++ P +++S+S D IK+W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG 187
+ G+ C + F GH +V V N +D AS S D+T+++W + + + L H+
Sbjct: 221 VQTGY-CVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 278
Query: 188 VNCVDYF------------------TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
V C+ + +G P+L++GS D T K+WD T C+ TL GH
Sbjct: 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 338
Query: 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289
+ V V FH I++ ++D T+R+W R TLN V ++ + K++ +V G
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398
Query: 290 YDEGTIMV 297
+ T+ V
Sbjct: 399 SVDQTVKV 406
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 4/210 (1%)
Query: 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154
H + V HP ++S+S+D IK+WD+E G + +GH+ V ++F+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD-HS 161
Query: 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
AS S D TIK+W+ + T+ H V+ V GD ++++ S D T K+W
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMW 219
Query: 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV 274
+ QT CV+T GH V V + + +I + S D TVR+W T + L V
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 275 WAIGYMKSSRRIVIGYDEGTIMVKIGREEP 304
I + S I G+ K G+ P
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGP 309
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 24/231 (10%)
Query: 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAK 64
E R + V SV + P+ I+++ T+ +W Q+ K+F VR +
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 65 FVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL------------- 111
+ + ++D +RV+ T + H + C++ P
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 112 -------PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164
P++LS S D IK+WD G MC GH ++V V F+ + A D
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCAD-D 359
Query: 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
+T+++W+ + TL+AH+ V +D+ PY++TGS D T KVW+
Sbjct: 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 408
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 136/292 (46%), Gaps = 10/292 (3%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF 65
++ + L S V V P I ++ TV +WN Q + ++ VR F
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 106
Query: 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125
Q + + +DD ++++N N ++ H+ + VA P + S+SDD +KL
Sbjct: 107 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185
W+ + Q GHS V V F+P D T ASAS D+T+K+WN TL H
Sbjct: 166 WN--RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS 221
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
V V + D + + SDD T K+W+ + +QTL GH+ +V+ V F P+ I
Sbjct: 222 SSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
+ S+D TV++W+ L+ TL VW + + + I D+ T+ +
Sbjct: 279 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 135/292 (46%), Gaps = 10/292 (3%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF 65
++ + L S V V P I ++ TV +WN Q + ++ VR F
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAF 229
Query: 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125
Q + + +DD ++++N N ++ H+ + VA P + S+SDD +KL
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288
Query: 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185
W+ + Q GHS V V F+P D T ASAS D+T+K+WN TL H
Sbjct: 289 WN--RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQ-TLTGHS 344
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
V V + D + + SDD T K+W+ + +QTL GH+ +V V F P+ I
Sbjct: 345 SSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
+ S+D TV++W+ L+ TL VW + + + I D+ T+ +
Sbjct: 402 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 133/292 (45%), Gaps = 10/292 (3%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF 65
++ + L S V V P I ++ TV +WN Q + ++ V F
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAF 311
Query: 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125
Q + + +DD ++++N N ++ H+ + VA P + S+SDD +KL
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185
W+ + Q GHS V V F+P D T ASAS D+T+K+WN TL H
Sbjct: 371 WN--RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHS 426
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
V V + D + + SDD T K+W+ + +QTL GH+ +V V F P+ I
Sbjct: 427 SSVWGVAFSP--DDQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPDGQTIA 483
Query: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
+ S+D TV++W+ L+ TL V + + + I D+ T+ +
Sbjct: 484 SASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 9/249 (3%)
Query: 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR 68
+ L S V V P I ++ TV +WN Q + ++ VR F
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVRGVAFSPD 396
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128
Q + + +DD ++++N N ++ H+ + VA P + S+SDD +KLW+
Sbjct: 397 GQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN- 454
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
+ Q GHS V V F+P D T ASAS D+T+K+WN TL H V
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 511
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
V + D + + SDD T K+W+ + +QTL GH+ +V V F P+ I + S
Sbjct: 512 RGVAFSP--DGQTIASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASAS 568
Query: 249 EDGTVRIWH 257
D TV++W+
Sbjct: 569 SDKTVKLWN 577
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 8/203 (3%)
Query: 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154
EAH+ +R VA P + S+SDD +KLW+ + Q GHS V V F+P D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSP-D 68
Query: 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214
T ASAS D+T+K+WN TL H V V + D + + SDD T K+W
Sbjct: 69 GQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLW 125
Query: 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV 274
+ + +QTL GH+ +V V F P+ I + S+D TV++W+ L+ TL V
Sbjct: 126 NRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 183
Query: 275 WAIGYMKSSRRIVIGYDEGTIMV 297
W + + + I D+ T+ +
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKL 206
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ AS + IW K+ +L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 138 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 251
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + A++S D+ IKIW G+ D F T+ H+ G++ V + +
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLAASSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSS 78
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 79 --DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L S D K+W +T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE--WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 193
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 194 DNPPVSFVKFSPNGKYIL 211
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 123/263 (46%), Gaps = 12/263 (4%)
Query: 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ 70
LA ++ V SV P+ W+ +S + IW K+ +L + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130
+V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++WD +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVN 189
G MC + HS V V FN +D + S+S D +IW+ S TL D V+
Sbjct: 142 G-MCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-----I 244
V + G Y++ + D+T K+WDY C++T GH + C + I
Sbjct: 200 FVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWI 255
Query: 245 ITGSEDGTVRIWHATTYRLENTL 267
++GSED V IW+ T + L
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKL 278
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 76
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293
W T TL + V A+ + + IV +G
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVA 67
+ L S+ V +V + I++S Y G IW+ S Q + + PV KF
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL---PYVLSSSDDMLIK 124
++++A D +++++Y+ +K + H + C+ + ++ +++S S+D ++
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL--DRTIKIW 170
+W+ + + Q +GH+ V+ +P + N ASA+L D+TIK+W
Sbjct: 266 IWNLQTKEI-VQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + ++ + A H I S D ++ G+ L + +
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 193
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 194 DNPPVSFVKFSPNGKYIL 211
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 138 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 251
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V + +
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSS 78
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 79 --DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 193
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 194 DNPPVSFVKFSPNGKYIL 211
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 138 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 196 PPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 251
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 252 GKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V + +
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAWSS 78
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 79 --DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 168
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 193
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 194 DNPPVSFVKFSPNGKYIL 211
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 141 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 199 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 254
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 79
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 196
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 197 DNPPVSFVKFSPNGKYIL 214
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 141 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 199 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 254
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 79
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 172 LGSPD---------PN----FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
LGSP+ PN FTL H K V+ V + G+ +L + S D K+W
Sbjct: 3 LGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD 60
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278
+T+ GH +S V + + ++++ S+D T++IW ++ + TL V+
Sbjct: 61 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 120
Query: 279 YMKSSRRIVIG-YDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD---- 333
+ S IV G +DE + + + + ++ + A H I S D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 334 -YEVTDGERLPLAVKELGTCDLYPQS-LKHNPNGRFVV 369
++ G+ L + + D P S +K +PNG++++
Sbjct: 181 IWDTASGQCLKTLIDD----DNPPVSFVKFSPNGKYIL 214
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 134 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 192 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 247
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 248 GKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 18 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 72
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 164
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 189
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 190 DNPPVSFVKFSPNGKYIL 207
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 152 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 210 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 265
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 266 GKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 36 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 90
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 182
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 207
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 208 DNPPVSFVKFSPNGKYIL 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 140 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 198 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 253
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 254 GKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 24 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 78
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 170
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 195
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 196 DNPPVSFVKFSPNGKYIL 213
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 157 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 215 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 270
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 271 GKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 41 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 95
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293
W T + TL + V A+ + + IV +G
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 212
Query: 353 DLYPQS-LKHNPNGRFVVV 370
D P S +K +PNG++++
Sbjct: 213 DNPPVSFVKFSPNGKYILA 231
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 159 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 217 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 272
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 273 GKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 43 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 97
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293
W T + TL + V A+ + + IV +G
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIM- 296
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 297 -VKIGR 301
VK G+
Sbjct: 159 DVKTGK 164
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 131 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 189 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 244
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 245 GKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 15 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 69
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 161
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 186
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 187 DNPPVSFVKFSPNGKYIL 204
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 136 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 194 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 249
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 250 GKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 20 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 74
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 166
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 191
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 192 DNPPVSFVKFSPNGKYIL 209
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 141 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 199 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 254
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 255 GKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 79
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 196
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 197 DNPPVSFVKFSPNGKYIL 214
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 135 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 193 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 248
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 73
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
W T + TL + V A+ + + IV
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 190
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 191 DNPPVSFVKFSPNGKYIL 208
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Query: 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV 66
+K LA ++ V SV P+ W+ +S + IW K+ +L + +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+ +V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ 185
D + G C + HS V V FN +D + S+S D +IW+ S TL D
Sbjct: 135 DVKTG-KCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-- 243
V+ V + G Y++ + D+T K+WDY C++T GH + C +
Sbjct: 193 PPVSFVKFSPNGK--YILAATLDNTLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTG 248
Query: 244 ---IITGSEDGTVRIWHATTYRLENTL 267
I++GSED V IW+ T + L
Sbjct: 249 GKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 73
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293
W T + TL + V A+ + + IV +G
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + + ++ + A H I S D ++ G+ L + +
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 190
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 191 DNPPVSFVKFSPNGKYIL 208
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 12/263 (4%)
Query: 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ 70
LA ++ V SV P+ W+ +S + IW K+ +L + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130
+V+ +DD +++++ ++ +K + H++Y+ C +P ++S S D +++WD +
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVN 189
G MC + HS V V FN +D + S+S D +IW+ S TL D V+
Sbjct: 142 G-MCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-----I 244
V + G Y++ + D+ K+WDY C++T GH + C + I
Sbjct: 200 FVKFSPNG--KYILAATLDNDLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWI 255
Query: 245 ITGSEDGTVRIWHATTYRLENTL 267
++GSED V IW+ T + L
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKL 278
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFT 195
GH+ V V F+P + AS+S D+ IKIW G+ D F T+ H+ G++ V +
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGISDVAW-- 76
Query: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
D L++ SDD T K+WD + C++TL+GH++ V F+P+ +I++GS D +VRI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293
W T TL + V A+ + + IV +G
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVA 67
+ L S+ V +V + I++S Y G IW+ S Q + + PV KF
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL---PYVLSSSDDMLIK 124
++++A D +++++Y+ +K + H + C+ + ++ +++S S+D ++
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL--DRTIKIW 170
+W+ + + Q +GH+ V+ +P + N ASA+L D+TIK+W
Sbjct: 266 IWNLQTKEI-VQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 13/198 (6%)
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
FTL H K V+ V + G+ +L + S D K+W +T+ GH +S V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMV 297
+ ++++ S+D T++IW ++ + TL V+ + S IV G +DE +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD-----YEVTDGERLPLAVKELGTC 352
+ + ++ + A H I S D ++ G+ L + +
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD---- 193
Query: 353 DLYPQS-LKHNPNGRFVV 369
D P S +K +PNG++++
Sbjct: 194 DNPPVSFVKFSPNGKYIL 211
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 22/278 (7%)
Query: 30 ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89
I++ T+ +WN ++ + VR ++ VV+G+ D +RV++ T
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETG 229
Query: 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149
+ V H +RCV V+S + D ++K+WD E C +GH++ V +
Sbjct: 230 QCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQ 286
Query: 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209
F D S SLD +I++W++ + + TL HQ + ++ L++G+ D
Sbjct: 287 F---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL----KDNILVSGNADS 339
Query: 210 TAKVWDYQTKSCVQTLEGHTHNVSAV-CFHPELPIIITGSEDGTVRIWHATT-------Y 261
T K+WD +T C+QTL+G + SAV C +IT S+DGTV++W T
Sbjct: 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Query: 262 RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299
LE+ + G+ VW I + +G GT K+
Sbjct: 400 TLESGGSGGV--VWRIRASNTKLVCAVGSRNGTEETKL 435
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 127/272 (46%), Gaps = 23/272 (8%)
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
R +++G+ D ++V+N T + + HT +RC+ +H V+S S D +++WD
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWD 225
Query: 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG 187
E G C + GH V V + D S + D +K+W+ + TL H
Sbjct: 226 IETG-QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247
V + + D ++++GS D + +VWD +T +C+ TL GH S + I+++G
Sbjct: 282 VYSLQF----DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSG 335
Query: 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI-GYDEGTIM---VKIG--- 300
+ D TV+IW T + TL + A+ ++ ++ VI D+GT+ +K G
Sbjct: 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Query: 301 REEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332
R SG ++W I+ N K V A
Sbjct: 396 RNLVTLESGGSGGVVW----RIRASNTKLVCA 423
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 12/197 (6%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131
+V+G+DD ++V++ T ++ HT + + + ++S S D +K+W+ E G
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETG 189
Query: 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
C GH+ V + + K S S D T+++W++ + L H V CV
Sbjct: 190 -ECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251
Y D +++G+ D KVWD +T++C+ TL+GHT+ V ++ F + +++GS D
Sbjct: 246 QY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299
Query: 252 TVRIWHATTYRLENTLN 268
++R+W T +TL
Sbjct: 300 SIRVWDVETGNCIHTLT 316
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 127 DWEKGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185
+W +G + + ++ +GH +V +T N S S D T+K+W+ + TL H
Sbjct: 102 NWRRGELKSPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 159
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
GV + + +I+GS D T KVW+ +T C+ TL GHT V C H ++
Sbjct: 160 GGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVV 213
Query: 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKI 299
+GS D T+R+W T + + L + V + Y RR+V G YD MVK+
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD---FMVKV 263
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Query: 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154
E H+ ++ VA+ + +S+S D ++LW+ + G C F GH+ V+ V F+P D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG-QCQYKFLGHTKDVLSVAFSP-D 120
Query: 155 TNTFASASLDRTIKIWNL-GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213
S D +++WN+ G + AH V+CV + D P +++G D+ KV
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259
WD T V L+GHT+ V++V P+ + + +DG R+W T
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR 68
R+L S V V L + + +++ + ++ +WN Q+ F V S F
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 69 KQWVVAGADDMFIRVYN-----YNTMDKVKVFEAHTDYIRCVAVHPTL--PYVLSSSDDM 121
+ +V+G D +RV+N +T+ + AHTD++ CV P+L P ++S D
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSR----GAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 122 LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172
L+K+WD G + T + +GH++YV VT +P D + AS+ D ++W+L
Sbjct: 177 LVKVWDLATGRLVTDL-KGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDL 225
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
EGHS +V V + + N SAS D ++++WNL + + H K V V +
Sbjct: 63 LEGHSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP-- 119
Query: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHPEL--PIIITGSEDGTV 253
D +++G D+ +VW+ + + C+ TL HT VS V F P L P+I++G D V
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 254 RIWHATTYRLENTL 267
++W T RL L
Sbjct: 179 KVWDLATGRLVTDL 192
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 12/217 (5%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAK 64
+ + K ++ V SV P I++ + +WN + + M V +
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 65 FVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
F +V+G D ++V++ T V + HT+Y+ V V P SS D +
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
+LWD KG +++ G + Q+ F+P + A+ ++ I+I++L + D L
Sbjct: 220 ARLWDLTKGEALSEMAAGAP--INQICFSPN--RYWMCAATEKGIRIFDLENKDIIVELA 275
Query: 183 AHQKGVN-----CVDYFTGGDKPYLITGSDDHTAKVW 214
+G CV D L +G D+ +VW
Sbjct: 276 PEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132
V+ + D +R++N F HT + VA P ++S D +++W+ +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGEC 142
Query: 133 MCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
M T H+ +V V F+P D S D +K+W+L + L H V V
Sbjct: 143 MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 192 DYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250
G L SD D A++WD + + ++ +CF P + +E
Sbjct: 203 TVSPDGS---LCASSDKDGVARLWDLTKGEALSEMAAGAP-INQICFSPNRYWMCAATEK 258
Query: 251 GTVRIWHATTYRLEN 265
G +RI + LEN
Sbjct: 259 G-IRI-----FDLEN 267
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 16/251 (6%)
Query: 9 RKLAQRSERVKSV-DLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA 67
+++ RSE K V L + I++ L T+ IW+ + + V ++
Sbjct: 124 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 183
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127
R ++ G+ D +RV++ NT + + H + + + + + +++ S D I +WD
Sbjct: 184 RV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 128 WEKGWMCT--QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185
T ++ GH V V F+ K SAS DRTIK+WN + + TL+ H+
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHK 296
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
+G+ C+ Y +++GS D+T ++WD + +C++ LEGH V + F + I+
Sbjct: 297 RGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IV 350
Query: 246 TGSEDGTVRIW 256
+G+ DG +++W
Sbjct: 351 SGAYDGKIKVW 361
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
KGV C+ Y D +++G D+T K+WD T C + L GHT +V +C + +II
Sbjct: 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVII 187
Query: 246 TGSEDGTVRIWHATTYRLENTLNYGLERV 274
TGS D TVR+W T + NTL + E V
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 15/185 (8%)
Query: 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
++S D IK+WD + C +I GH+ V+ + + D + S D T+++W++
Sbjct: 146 IVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVN 201
Query: 174 SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV---QTLEGHTH 230
+ + TL H + V + + G ++T S D + VWD + + + + L GH
Sbjct: 202 TGEMLNTLIHHCEAVLHLRFNNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290
V+ V F + I++ S D T+++W+ +T TLN + + Y R +V G
Sbjct: 258 AVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS 313
Query: 291 DEGTI 295
+ TI
Sbjct: 314 SDNTI 318
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 72 VVAGADDMFIRVYNYNTMDKV-----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+V+ + D I ++ DK + H+ ++ V + + LS S D ++LW
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN-LGSPDPNFTL---- 181
D G + T+ F GH+ V+ V F+ D SAS DRTIK+WN LG + +T+
Sbjct: 458 DLAAG-VSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLG--ECKYTISEGG 513
Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
+ H+ V+CV + +P +++ S D T KVW+ TL GHT VS V P+
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 242 PIIITGSEDGTVRIW 256
+ +G +DG V +W
Sbjct: 574 SLCASGGKDGVVLLW 588
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 34/280 (12%)
Query: 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA 67
+R+L S V+ V L + L+ + G + +W+ + + F V S F
Sbjct: 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVF-----EAHTDYIRCVAVHPTL--PYVLSSSDD 120
+ +V+ + D I++ +NT+ + K E H D++ CV P P ++S+S D
Sbjct: 483 DNRQIVSASRDRTIKL--WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 121 MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180
+K+W+ + + + GH+ YV V +P D + AS D + +W+L ++
Sbjct: 541 KTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYS 598
Query: 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------G 227
L+A+ + + Y + + +H K+WD ++KS V+ L+ G
Sbjct: 599 LEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654
Query: 228 HTHNVSAVCFHPEL------PIIITGSEDGTVRIWHATTY 261
V + L + +G DG +R+W Y
Sbjct: 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-----LDAHQ 185
G + H+ V + + + SAS D++I +W L D + L H
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHS 430
Query: 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245
V D D + ++GS D ++WD + GHT +V +V F + I+
Sbjct: 431 HFVE--DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 246 TGSEDGTVRIWH 257
+ S D T+++W+
Sbjct: 489 SASRDRTIKLWN 500
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153
V HTD + + S D ++++ E G +I + H V+ F+
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTD 674
Query: 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213
D A+ S+D+ +KIWN + + T D H + VNC + L TGS D K+
Sbjct: 675 D-RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268
WD K C T+ GHT++V+ F P+ ++ + S DGT+++W AT+ ++N
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSIN 788
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%)
Query: 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
++SSSDD I++W+W+ C GH V F + S S D T+K+WN+
Sbjct: 1024 LISSSDDAEIQVWNWQLD-KCI-FLRGHQETVKD--FRLLKNSRLLSWSFDGTVKVWNII 1079
Query: 174 SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233
+ + HQ V D D + S D TAK+W + + L GH V
Sbjct: 1080 TGNKEKDFVCHQGTVLSCD--ISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR 1137
Query: 234 AVCFHPELPIIITGSEDGTVRIWHATTYRL 263
F + ++ TG ++G +RIW+ + L
Sbjct: 1138 CSAFSVDSTLLATGDDNGEIRIWNVSNGEL 1167
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 105/270 (38%), Gaps = 59/270 (21%)
Query: 44 YQSQTMAKSFEVT--ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 101
++++T K E+ E V F +++ + D ++++N T + V ++ H++
Sbjct: 648 FKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ 707
Query: 102 IRCVAVHPTLPYVL--SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159
+ C + ++L + S D +KLWD + C GH++ V F+P D A
Sbjct: 708 VNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-KLLA 765
Query: 160 SASLDRTIKIWN----------------LGSPDPN------------------------- 178
S S D T+K+W+ L DP
Sbjct: 766 SCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN 825
Query: 179 --FTLDAHQKGV---------NCVDYFTGGDKPYL-ITGSDDHTAKVWDYQTKSCVQTLE 226
F D H G+ + + Y + +L + + ++W+ ++S V
Sbjct: 826 KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCR 885
Query: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
GH V V F P+ +T S+D T+R+W
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 4/157 (2%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
V A F Q + + D ++V+ T +K+ +AH D + C A ++ + S
Sbjct: 624 VYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWNLGSPDPN 178
D +K+W+ G + ++ HS V F N A+ S D +K+W+L +
Sbjct: 684 DKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
T+ H VN + D L + S D T K+WD
Sbjct: 743 NTMFGHTNSVNHCRF--SPDDKLLASCSADGTLKLWD 777
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 39/236 (16%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
++ F + V + ++N ++ KV H ++ V P L+SSD
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSD 908
Query: 120 DMLIKLWDWEK-----GWMCTQ----IFEGHSHYVMQVTFNPK-----------DTNTFA 159
D I+LW+ +K M Q +F+ + V+ V + D T A
Sbjct: 909 DQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEA 968
Query: 160 SASL---------------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
S + I+I L + + H+K V + + D+ LI+
Sbjct: 969 QVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQF--TADEKTLIS 1026
Query: 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
SDD +VW++Q C+ L GH V +++ S DGTV++W+ T
Sbjct: 1027 SSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWNIIT 1080
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 10/159 (6%)
Query: 30 ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89
+L+ + GTV +WN + K F + V S + + D ++++++ +
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFE----GHS 142
+ H +RC A + + D+ I++W+ G +C + E H
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
+V + F+P D SA IK WN+ + + + T
Sbjct: 1184 GWVTDLCFSP-DGKMLISAG--GYIKWWNVVTGESSQTF 1219
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 18/264 (6%)
Query: 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP---VR 61
++ +R L +V +D + I++S G V +W+ S T K VT +P V
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD--SFTTNKEHAVT-MPCTWVM 110
Query: 62 SAKFVARKQWVVAGADDMFIRVY------NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVL 115
+ + + G D VY N N K K HT+Y+ + + +L
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQIL 170
Query: 116 SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDT-NTFASASLDRTIKIWNLGS 174
++S D LWD E G + Q F GH V+ + P +T NTF S D+ +W++ S
Sbjct: 171 TASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229
Query: 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--KSCVQTLEGHTHNV 232
+ H+ VN V Y+ GD +GSDD T +++D + + + + E
Sbjct: 230 GQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREVAIYSKESIIFGA 287
Query: 233 SAVCFHPELPIIITGSEDGTVRIW 256
S+V F ++ G D T+ +W
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVW 311
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 9/162 (5%)
Query: 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
H++Y+ +F D +AS D T +W++ S + H V C+D
Sbjct: 153 HTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
++G D A VWD ++ CVQ E H +V++V ++P +GS+D T R++
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Query: 261 YR-----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
R + ++ +G ++ + S R + GY++ TI V
Sbjct: 272 DREVAIYSKESIIFGAS---SVDFSLSGRLLFAGYNDYTINV 310
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Query: 18 VKSVDLHPSEPW--ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG 75
V +DL PSE ++ +W+ +S ++FE E V S ++ +G
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG 258
Query: 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWM 133
+DD R+Y+ +V ++ + +V +L + + +D I +WD KG
Sbjct: 259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+ +F GH + V + +P D F S S D T+++W
Sbjct: 319 VSILF-GHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282
+TL+GH + V + + + I++ S+DG V +W + T E+ + V A Y S
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 283 SRRIVIG 289
I G
Sbjct: 118 GCAIACG 124
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSS 118
R AK A+++ +++ N T+ + V HTD + + S
Sbjct: 578 RQAKLQAKQE---GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCG 634
Query: 119 DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
D ++++ E G I + H V+ F+ D+ A+ S D+ +KIW+ +
Sbjct: 635 ADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLV 692
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
T D H + VNC + + L TGS+D K+WD K C T+ GHT++V+ F
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 752
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLN 268
P+ ++ + S DGT+R+W + ++N
Sbjct: 753 PDDELLASCSADGTLRLWDVRSANERKSIN 782
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
++V G +D I++ + +VF + H +R + ++SSS+D +I++W
Sbjct: 974 EYVAFGDEDGAIKIIE---LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--GSPDPNFTLDAH 184
+W+ G + H V F + S S D T+K+WN+ G + +FT H
Sbjct: 1031 NWQTGDYV--FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT--CH 1084
Query: 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244
Q V + D + S D TAK+W + S + L+GH V F + ++
Sbjct: 1085 QGTV--LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 245 ITGSEDGTVRIWHATTYRL 263
TG ++G +RIW+ + +L
Sbjct: 1143 ATGDDNGEIRIWNVSDGQL 1161
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
V A F Q + + D ++V+ T +K+ +AH D + C A Y+ + S
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPN 178
D +K+WD G + ++ HS V F K + A+ S D +K+W+L +
Sbjct: 678 DKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
T+ H VN + D L + S D T ++WD ++
Sbjct: 737 NTMFGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRS 774
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/270 (19%), Positives = 104/270 (38%), Gaps = 59/270 (21%)
Query: 44 YQSQTMAKSFEVT--ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 101
++++T K ++ E V F + ++ + D +++++ T V ++ H++
Sbjct: 642 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 102 IRCVAVHPTLPYVL--SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159
+ C ++L + S+D +KLWD + C GH++ V F+P D A
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-ELLA 759
Query: 160 SASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDK------- 199
S S D T+++W++ S + +++ + V C + GDK
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819
Query: 200 ------------------------------PY---LITGSDDHTAKVWDYQTKSCVQTLE 226
PY + + ++W+ ++ V
Sbjct: 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 879
Query: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
GH V V F P+ +T S+D T+R+W
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 120/319 (37%), Gaps = 61/319 (19%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV------TELP 59
E + + + V P + + + GT+ +W+ +S KS V +E P
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC---VAVHPTLPYVLS 116
+ + + A D + + N KV +F+ HT + H T+ Y
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAKN-----KVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 117 SSDDML---------IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167
S D L ++LW+ + GH +V V F+P D ++F +AS D+TI
Sbjct: 849 SPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTI 906
Query: 168 KIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217
++W N + Q+ V VD G LI G T ++ DY
Sbjct: 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGK---TGQI-DYL 959
Query: 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAI 277
++ VS C P L + G EDG ++I R+ ++ +
Sbjct: 960 PEA----------QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS---------GV 1000
Query: 278 GYMKSSRRIVIGYDEGTIM 296
G+ K+ R I D T++
Sbjct: 1001 GHKKAVRHIQFTADGKTLI 1019
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 30 ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89
+L+ + GTV +WN + + + F + V S + + + D ++++++ +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIF--EG---H 141
+ + H +RC A + + D+ I++W+ G + C I EG H
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
+V V F+P D+ T SA +K WN+ + D + T
Sbjct: 1178 GGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTF 1214
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 43/221 (19%)
Query: 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ---- 136
+ ++N ++ KV H ++ V P L++SDD I++W+ +K +C
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK--VCKNSAIV 921
Query: 137 -------IFEGHSHYVM----------------QVTFNPKDTNTFASASL---------- 163
+F+ + V+ Q+ + P+ + S
Sbjct: 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 981
Query: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223
D IKI L + + H+K V + + D LI+ S+D +VW++QT V
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQF--TADGKTLISSSEDSVIQVWNWQTGDYV- 1038
Query: 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264
L+ H V + +++ S DGTV++W+ T R+E
Sbjct: 1039 FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIE 1078
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSS 118
R AK A+++ +++ N T+ + V HTD + + S
Sbjct: 585 RQAKLQAKQE---GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCG 641
Query: 119 DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
D ++++ E G I + H V+ F+ D+ A+ S D+ +KIW+ +
Sbjct: 642 ADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLV 699
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238
T D H + VNC + + L TGS+D K+WD K C T+ GHT++V+ F
Sbjct: 700 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS 759
Query: 239 PELPIIITGSEDGTVRIWHATTYRLENTLN 268
P+ ++ + S DGT+R+W + ++N
Sbjct: 760 PDDELLASCSADGTLRLWDVRSANERKSIN 789
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
++V G +D I++ + +VF + H +R + ++SSS+D +I++W
Sbjct: 981 EYVAFGDEDGAIKIIE---LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--GSPDPNFTLDAH 184
+W+ G + H V F + S S D T+K+WN+ G + +FT H
Sbjct: 1038 NWQTGDYV--FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT--CH 1091
Query: 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244
Q V + D + S D TAK+W + S + L+GH V F + ++
Sbjct: 1092 QGTV--LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1149
Query: 245 ITGSEDGTVRIWHATTYRL 263
TG ++G +RIW+ + +L
Sbjct: 1150 ATGDDNGEIRIWNVSDGQL 1168
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
V A F Q + + D ++V+ T +K+ +AH D + C A Y+ + S
Sbjct: 625 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPN 178
D +K+WD G + ++ HS V F K + A+ S D +K+W+L +
Sbjct: 685 DKKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
T+ H VN + D L + S D T ++WD ++
Sbjct: 744 NTMFGHTNSVNHCRF--SPDDELLASCSADGTLRLWDVRS 781
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/270 (19%), Positives = 104/270 (38%), Gaps = 59/270 (21%)
Query: 44 YQSQTMAKSFEVT--ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY 101
++++T K ++ E V F + ++ + D +++++ T V ++ H++
Sbjct: 649 FKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 102 IRCVAVHPTLPYVL--SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159
+ C ++L + S+D +KLWD + C GH++ V F+P D A
Sbjct: 709 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDD-ELLA 766
Query: 160 SASLDRTIKIWNLGSPDPNFTLDAH-------------QKGVNCVDYFTGGDK------- 199
S S D T+++W++ S + +++ + V C + GDK
Sbjct: 767 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 826
Query: 200 ------------------------------PY---LITGSDDHTAKVWDYQTKSCVQTLE 226
PY + + ++W+ ++ V
Sbjct: 827 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 886
Query: 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
GH V V F P+ +T S+D T+R+W
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 120/319 (37%), Gaps = 61/319 (19%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV------TELP 59
E + + + V P + + + GT+ +W+ +S KS V +E P
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 800
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC---VAVHPTLPYVLS 116
+ + + A D + + N KV +F+ HT + H T+ Y
Sbjct: 801 PEDVEVIVKCCSWSADGDKIIVAAKN-----KVLLFDIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 117 SSDDML---------IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167
S D L ++LW+ + GH +V V F+P D ++F +AS D+TI
Sbjct: 856 SPYDHLAVIALSQYCVELWNIDSRLKVADC-RGHLSWVHGVMFSP-DGSSFLTASDDQTI 913
Query: 168 KIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217
++W N + Q+ V VD G LI G T ++ DY
Sbjct: 914 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG---LQLIAGK---TGQI-DYL 966
Query: 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAI 277
++ VS C P L + G EDG ++I R+ ++ +
Sbjct: 967 PEA----------QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS---------GV 1007
Query: 278 GYMKSSRRIVIGYDEGTIM 296
G+ K+ R I D T++
Sbjct: 1008 GHKKAVRHIQFTADGKTLI 1026
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 30 ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89
+L+ + GTV +WN + + + F + V S + + + D ++++++ +
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIF--EG---H 141
+ + H +RC A + + D+ I++W+ G + C I EG H
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1184
Query: 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181
+V V F+P D+ T SA +K WN+ + D + T
Sbjct: 1185 GGWVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDSSQTF 1221
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 43/221 (19%)
Query: 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ---- 136
+ ++N ++ KV H ++ V P L++SDD I++W+ +K +C
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK--VCKNSAIV 928
Query: 137 -------IFEGHSHYVM----------------QVTFNPKDTNTFASASL---------- 163
+F+ + V+ Q+ + P+ + S
Sbjct: 929 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE 988
Query: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223
D IKI L + + H+K V + + G LI+ S+D +VW++QT V
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT--LISSSEDSVIQVWNWQTGDYV- 1045
Query: 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264
L+ H V + +++ S DGTV++W+ T R+E
Sbjct: 1046 FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIE 1085
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 118/289 (40%), Gaps = 24/289 (8%)
Query: 2 PLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR 61
P L R L S +V S+D P + WI+++ G + +WN + + ++ V
Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM 112
Query: 62 SAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYI-RCVAVHPTLPY 113
F Q V G D ++N ++ M +V H Y C V
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 114 VLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169
+++ S D LWD G ++ GH+ V+ ++ N + N F S S D T+++
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 170 WNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228
W+L + T H+ +N V +F G + TGSDD T +++D +T +Q
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQR--FGTGSDDGTCRLFDMRTGHQLQVYNRE 290
Query: 229 THN-------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270
V++V F ++ G +G +W T E LN G
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD--TLLAEMVLNLG 337
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280
C +TL+GH+ V ++ + PE I++ S+DG + +W+A T + + + V +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 281 KSSRRIVIG 289
+ + + G
Sbjct: 118 PNGQSVACG 126
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 116/262 (44%), Gaps = 25/262 (9%)
Query: 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD 77
++SV P ++ + IW+ +++ + + E + S + +V+G+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQ 136
D +R+++ T + + + D + VAV P Y+ + S D +++WD E G++ +
Sbjct: 186 DRTVRIWDLRT-GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 137 I------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190
+ GH V V F +D + S SLDR++K+WNL + + G
Sbjct: 245 LDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 191 VDYF----------TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC---- 236
V Y T + Y+++GS D WD ++ + + L+GH ++V +V
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 237 --FHPELPIIITGSEDGTVRIW 256
PE + TGS D RIW
Sbjct: 364 SSLGPEYNVFATGSGDCKARIW 385
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160
YIR V P ++ + ++D LI++WD E + I +GH + + + P + S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPS-GDKLVS 182
Query: 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220
S DRT++IW+L + + TL + + GV V + GD Y+ GS D +VWD +T
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTL-SIEDGVTTV-AVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 221 CVQTLE-------GHTHNVSAVCFHPELPIIITGSEDGTVRIW---HATTYRLENTLNYG 270
V+ L+ GH +V +V F + +++GS D +V++W +A T N G
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 271 LERVWAIGY 279
V IG+
Sbjct: 301 TCEVTYIGH 309
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN------------ 231
H V CV + G+ YL TG + T +V+ S V L +
Sbjct: 63 HTSVVCCVKFSNDGE--YLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 232 ------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285
+ +VCF P+ + TG+ED +RIW ++ L + ++++ Y S +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 286 IVIGYDEGTIMV 297
+V G + T+ +
Sbjct: 180 LVSGSGDRTVRI 191
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 21/252 (8%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW--- 128
+V+ + D + +++ T +KV + ++ A P+ YV D + +++
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
E ++ GH+ Y+ F D N ++S D T +W++ + T H V
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D ++G+ D +AK+WD + C QT GH +++A+CF P TGS
Sbjct: 199 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 249 EDGTVRIW------HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV----K 298
+D T R++ TY +N + + ++ + KS R ++ GYD+ V K
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALK 312
Query: 299 IGREEPVASMDN 310
R +A DN
Sbjct: 313 ADRAGVLAGHDN 324
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARK 69
RS V + PS ++ I+N +++ +++ + +F+
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 166
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129
Q +V + D +++ T + F HT + +++ P +S + D KLWD
Sbjct: 167 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--- 186
+G MC Q F GH + + F P + N FA+ S D T ++++L D +H
Sbjct: 226 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMTYSHDNIIC 282
Query: 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246
G+ V + G L+ G DD VWD L GH + VS + + + T
Sbjct: 283 GITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 340
Query: 247 GSEDGTVRIWH 257
GS D ++IW+
Sbjct: 341 GSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 21/252 (8%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW--- 128
+V+ + D + +++ T +KV + ++ A P+ YV D + +++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
E ++ GH+ Y+ F D N ++S D T +W++ + T H V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D ++G+ D +AK+WD + C QT GH +++A+CF P TGS
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 249 EDGTVRIW------HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV----K 298
+D T R++ TY +N + + ++ + KS R ++ GYD+ V K
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 299 IGREEPVASMDN 310
R +A DN
Sbjct: 302 ADRAGVLAGHDN 313
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARK 69
RS V + PS ++ I+N +++ +++ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129
Q +V + D +++ T + F HT + +++ P +S + D KLWD
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--- 186
+G MC Q F GH + + F P + N FA+ S D T ++++L D +H
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMTYSHDNIIC 271
Query: 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246
G+ V + G L+ G DD VWD L GH + VS + + + T
Sbjct: 272 GITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 247 GSEDGTVRIWH 257
GS D ++IW+
Sbjct: 330 GSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 21/252 (8%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW--- 128
+V+ + D + +++ T +KV + ++ A P+ YV D + +++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
E ++ GH+ Y+ F D N ++S D T +W++ + T H V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D ++G+ D +AK+WD + C QT GH +++A+CF P TGS
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 249 EDGTVRIW------HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV----K 298
+D T R++ TY +N + + ++ + KS R ++ GYD+ V K
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 299 IGREEPVASMDN 310
R +A DN
Sbjct: 302 ADRAGVLAGHDN 313
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 13/251 (5%)
Query: 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARK 69
RS V + PS ++ I+N +++ +++ + +F+
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129
Q +V + D +++ T + F HT + +++ P +S + D KLWD
Sbjct: 156 Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--- 186
+G MC Q F GH + + F P + N FA+ S D T ++++L D +H
Sbjct: 215 EG-MCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMTYSHDNIIC 271
Query: 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246
G+ V + G L+ G DD VWD L GH + VS + + + T
Sbjct: 272 GITSVSFSKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 247 GSEDGTVRIWH 257
GS D ++IW+
Sbjct: 330 GSWDSFLKIWN 340
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152
+ H+ ++ V + + LS S D ++LWD G T+ F GH+ V+ V F+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFS- 137
Query: 153 KDTNTFASASLDRTIKIWN-LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211
D S S D+TIK+WN LG ++H + V+CV + P +++ D
Sbjct: 138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 212 KVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLE--- 264
KVW+ GHT ++ V P+ + +G +DG +W Y L+
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 265 --NTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVAS 307
N L + R W S +I +D EG I+V ++E +++
Sbjct: 258 IINALCFSPNRYWLCAATGPSIKI---WDLEGKIIVDELKQEVIST 300
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 18/264 (6%)
Query: 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA 67
+R L S V V + + L+ + GT+ +W+ + T + F V S F +
Sbjct: 79 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHP--TLPYVLSSSDDMLIK 124
+ +V+G+ D I+++N + K V E+H++++ CV P + P ++S D L+K
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184
+W+ + T GH+ Y+ VT +P D + AS D +W+L +TLD
Sbjct: 199 VWNLANCKLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD-- 254
Query: 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-- 242
G + ++ Y + + + K+WD + K V L+ + S+ P+
Sbjct: 255 --GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312
Query: 243 -------IIITGSEDGTVRIWHAT 259
+ G D VR+W T
Sbjct: 313 AWSADGQTLFAGYTDNLVRVWQVT 336
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-----TLDAHQKGVNCVD 192
+GH+ +V Q+ P+ + SAS D+TI +W L + N+ L H V+ D
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS--D 91
Query: 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT 252
D + ++GS D T ++WD T + + GHT +V +V F + I++GS D T
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 253 VRIWHA 258
+++W+
Sbjct: 152 IKLWNT 157
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152
+ H+ ++ V + + LS S D ++LWD G T+ F GH+ V+ V F+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFS- 114
Query: 153 KDTNTFASASLDRTIKIWN-LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211
D S S D+TIK+WN LG ++H + V+CV + P +++ D
Sbjct: 115 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 212 KVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLE--- 264
KVW+ GHT ++ V P+ + +G +DG +W Y L+
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 265 --NTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVAS 307
N L + R W S +I +D EG I+V ++E +++
Sbjct: 235 IINALCFSPNRYWLCAATGPSIKI---WDLEGKIIVDELKQEVIST 277
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 18/264 (6%)
Query: 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA 67
+R L S V V + + L+ + GT+ +W+ + T + F V S F +
Sbjct: 56 QRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 115
Query: 68 RKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHP--TLPYVLSSSDDMLIK 124
+ +V+G+ D I+++N + K V E+H++++ CV P + P ++S D L+K
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184
+W+ + T GH+ Y+ VT +P D + AS D +W+L +TLD
Sbjct: 176 VWNLANCKLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD-- 231
Query: 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-- 242
G + ++ Y + + + K+WD + K V L+ + S+ P+
Sbjct: 232 --GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289
Query: 243 -------IIITGSEDGTVRIWHAT 259
+ G D VR+W T
Sbjct: 290 AWSADGQTLFAGYTDNLVRVWQVT 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-----TLDAHQKGVNCVD 192
+GH+ +V Q+ P+ + SAS D+TI +W L + N+ L H V+ D
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS--D 68
Query: 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT 252
D + ++GS D T ++WD T + + GHT +V +V F + I++GS D T
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 253 VRIWHA 258
+++W+
Sbjct: 129 IKLWNT 134
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 21/252 (8%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW--- 128
+++ + D + +++ T +KV + ++ A P+ YV D + +++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
E ++ GH+ Y+ F D N ++S D T +W++ + T H V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D ++G+ D +AK+WD + C QT GH +++A+CF P TGS
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 249 EDGTVRIW------HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV----K 298
+D T R++ TY +N + + ++ + KS R ++ GYD+ V K
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 299 IGREEPVASMDN 310
R +A DN
Sbjct: 302 ADRAGVLAGHDN 313
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 113/304 (37%), Gaps = 55/304 (18%)
Query: 4 RLEIKRKLAQRSERVKSVDLH--PSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR 61
R++++ + R K +H +L++ G + IW+ + + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 SAKFVARKQWVVAGADDMFIRVYNYNTMD-KVKV---FEAHTDYIRC------------- 104
+ + +V G D +YN T + V+V HT Y+ C
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 105 ----------------------------VAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136
+++ P +S + D KLWD +G MC Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQ 220
Query: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK---GVNCVDY 193
F GH + + F P + N FA+ S D T ++++L D +H G+ V +
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTV 253
G L+ G DD VWD L GH + VS + + + TGS D +
Sbjct: 279 SKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 254 RIWH 257
+IW+
Sbjct: 337 KIWN 340
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 72 VVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129
VV G+ D ++V+ + +D E H + V + TLP SSS D I+LWD E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVN 189
G I G + F+P D+ A+ + + I+ + S ++LD K +
Sbjct: 111 NGKQIKSIDAGPVD-AWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249
+ Y D YL +G+ D ++D T + TLEGH + ++ F P+ +++T S+
Sbjct: 169 SIAY--SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 250 DGTVRIWHATTYRLENTLN 268
DG ++I+ L TL+
Sbjct: 227 DGYIKIYDVQHANLAGTLS 245
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 4/253 (1%)
Query: 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSA 63
RL+++ L V SVD+ + P +S + +W+ ++ KS + + +
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 64 KFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123
F Q++ G + ++ + K + +I +A P Y+ S + D +I
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA 183
++D G + EGH+ + +TF+P D+ +AS D IKI+++ + TL
Sbjct: 189 NIFDIATGKLL-HTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Query: 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243
H V V + D + ++ S D + KVWD T++CV T H V V ++
Sbjct: 247 HASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK 304
Query: 244 IITGSEDGTVRIW 256
I++ +D + I+
Sbjct: 305 IVSVGDDQEIHIY 317
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 13 QRSERVKSVDLHPSEPWILA----------SLYSGTVCIWNYQSQTMAKSFEVTELPVRS 62
+ +++KS+D P + W LA + G V I+ +S S + + S
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 63 AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
+ +++ +GA D I +++ T + E H IR + P ++++SDD
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182
IK++D + + + GH+ +V+ V F P DT+ F S+S D+++K+W++G+ T
Sbjct: 230 IKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGTRTCVHTFF 287
Query: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
HQ V V Y G K +++ DD ++D
Sbjct: 288 DHQDQVWGVKYNGNGSK--IVSVGDDQEIHIYD 318
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ 70
L R + + S+ P ++ + G + I++ + + + E +P+RS F Q
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
Query: 71 WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130
+V +DD +I++Y+ + H ++ VA P + +SSS D +K+WD
Sbjct: 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279
Query: 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
C F H V V +N + S D+ I I++
Sbjct: 280 R-TCVHTFFDHQDQVWGVKYNGNGSK-IVSVGDDQEIHIYD 318
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Query: 149 TFNPKDTNTFASASLDRTIKIWNLGSP--DPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206
T +++ T + SLD +K+W D ++L+ HQ GV VD P + S
Sbjct: 42 TNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD--ISHTLPIAASSS 99
Query: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266
D ++WD + +++++ + + F P+ + TG+ G V I+ + + E +
Sbjct: 100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159
Query: 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
L+ + + +I Y + + G +G I +
Sbjct: 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINI 190
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 21/252 (8%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW--- 128
+++ + D + +++ T +KV + ++ A P+ YV D + +++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV 188
E ++ GH+ Y+ F D N ++S D T +W++ + T H V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRF--LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D ++G+ D +AK+WD + C QT GH +++A+CF P TGS
Sbjct: 188 --MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 249 EDGTVRIW------HATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV----K 298
+D T R++ TY +N + + ++ + KS R ++ GYD+ V K
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 299 IGREEPVASMDN 310
R +A DN
Sbjct: 302 ADRAGVLAGHDN 313
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/304 (22%), Positives = 113/304 (37%), Gaps = 55/304 (18%)
Query: 4 RLEIKRKLAQRSERVKSVDLH--PSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR 61
R++++ + R K +H +L++ G + IW+ + + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 62 SAKFVARKQWVVAGADDMFIRVYNYNTMD-KVKV---FEAHTDYIRC------------- 104
+ + +V G D +YN T + V+V HT Y+ C
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 105 ----------------------------VAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136
+++ P +S + D KLWD +G MC Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQ 220
Query: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK---GVNCVDY 193
F GH + + F P + N FA+ S D T ++++L D +H G+ V +
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF 278
Query: 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTV 253
G L+ G DD VWD L GH + VS + + + TGS D +
Sbjct: 279 SKSG--RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 254 RIWH 257
+IW+
Sbjct: 337 KIWN 340
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA-VHPTLPYVLSSSDDMLIKLWDW 128
+V+ GADD IRVY+ + H + + H + ++S S D +++WD
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDI 190
Query: 129 EKGWMCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWNL----GSPD------- 176
+KG CT +FEGH+ V + K+ + S D T+ +W L PD
Sbjct: 191 KKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 177 ----------PNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224
P F L H V V G +++GS D+T VWD C+
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTV----SGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
L GHT + + + E I+ S D T+RIW L TL
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 94/238 (39%), Gaps = 31/238 (13%)
Query: 84 YNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS 142
YN + + H T I C+ YV++ +DD I+++D Q+ GH
Sbjct: 106 YNPKFVPQRTTLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQL-SGHD 162
Query: 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202
V + + S S DRT+++W++ + H V C+D + Y+
Sbjct: 163 GGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 203 ITGSDDHTAKVWDYQTKSCVQ-----------------------TLEGHTHNVSAVCFHP 239
+TGS D+T VW +S V L GH +V V H
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG 280
Query: 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
I+++GS D T+ +W + L+ +R+++ Y +R + + TI +
Sbjct: 281 N--IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 31/214 (14%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV--HPTLPYVLSSSDDMLIKLWDW- 128
+V+G+ D +RV++ VFE H +RC+ + + + Y+++ S D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 129 ---------------------EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167
E+ + GH V V+ + N S S D T+
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTL 292
Query: 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
+W++ + L H + Y ++ I+ S D T ++WD + TL+G
Sbjct: 293 IVWDVAQXKCLYILSGHTDRIYSTIY--DHERKRCISASXDTTIRIWDLENGELXYTLQG 350
Query: 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
HT V + + +++ + DG++R W A Y
Sbjct: 351 HTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA-VHPTLPYVLSSSDDMLIKLWDW 128
+V+ GADD IRVY+ + H + + H + ++S S D +++WD
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI--LVSGSTDRTVRVWDI 190
Query: 129 EKGWMCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWNL----GSPD------- 176
+KG CT +FEGH+ V + K+ + S D T+ +W L PD
Sbjct: 191 KKG-CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 177 ----------PNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224
P F L H V V G +++GS D+T VWD C+
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTV----SGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
L GHT + + + E I+ S D T+RIW L TL
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 31/238 (13%)
Query: 84 YNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS 142
YN + + H T I C+ YV++ +DD +I+++D Q+ GH
Sbjct: 106 YNPKFVPQRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQL-SGHD 162
Query: 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202
V + + S S DRT+++W++ + H V C+D + Y+
Sbjct: 163 GGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 203 ITGSDDHTAKVWDYQTKSCVQ-----------------------TLEGHTHNVSAVCFHP 239
+TGS D+T VW +S V L GH +V V H
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 280
Query: 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
I+++GS D T+ +W + L+ +R+++ Y +R + + TI +
Sbjct: 281 N--IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 31/214 (14%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV--HPTLPYVLSSSDDMLIKLWDW- 128
+V+G+ D +RV++ VFE H +RC+ + + + Y+++ S D + +W
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 129 ---------------------EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167
E+ + GH V V+ + N S S D T+
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTL 292
Query: 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
+W++ + L H + Y ++ I+ S D T ++WD + + TL+G
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYSTIY--DHERKRCISASMDTTIRIWDLENGELMYTLQG 350
Query: 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
HT V + + +++ + DG++R W A Y
Sbjct: 351 HTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 122/285 (42%), Gaps = 40/285 (14%)
Query: 7 IKRKLAQRSER-VKSVDLHPSEPWILASLYSGTVCIW--NYQSQTMAKSFEVTELPVRSA 63
K L++ +R V+ V P ++ ++ + T CIW N + E E V+S
Sbjct: 52 CKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV 111
Query: 64 KFVARKQWVVAGADDMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTLPYVLSSSDD 120
+ + + D + V+ + D+ V V +HT ++ V HP+ + S+S D
Sbjct: 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 121 MLIKLW-DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---- 175
+KL+ + E W+C EGH V + F+P AS S DRT++IW P
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQ 230
Query: 176 -------DPNF----TLDA-HQKGVNCVDY--FTGGDKPYLITGSDDHTAKVWDYQTKSC 221
DP++ TL H + + + + TG L T D +V+ S
Sbjct: 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA----LATACGDDAIRVFQEDPNSD 286
Query: 222 VQTL---------EGHTHNVSAVCFHPELP-IIITGSEDGTVRIW 256
Q + H+ +V+ V ++P+ P ++ + S+DG V W
Sbjct: 287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 20/184 (10%)
Query: 148 VTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLIT 204
+ +NP T AS DR I+IW + + HQ+ V V + G+ YL +
Sbjct: 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLAS 78
Query: 205 GSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA---T 259
S D T +W CV TLEGH + V +V + P ++ T S D +V +W
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 260 TYRLENTLNYGLERVWAIGYMKSSRRIV-IGYDEGTIMVKIGREEP-----VASMDNSGK 313
Y + LN + V + + S + YD+ VK+ REE A+++
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDWVCCATLEGHES 195
Query: 314 IIWA 317
+W+
Sbjct: 196 TVWS 199
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQV 148
E H ++ +A P +LS+S D + W D +K + + F+GHSH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGS 206
T D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI----DKKASXIISGS 126
Query: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATT 260
D T KVW + + C+ TL GH VS V P + II+ D V+ W+
Sbjct: 127 RDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
+++E IG+ S+ + +GT++ G++ +
Sbjct: 186 FQIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 220
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH V V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVXSVDID 116
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 117 KK-ASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 175 DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Query: 268 N 268
+
Sbjct: 235 S 235
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 25/229 (10%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 158 PNEKADDDSVT--IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 119 DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178
D I LW+ + V + F+P + +A+ IK+++L DP
Sbjct: 216 KDGEIXLWNLAAKKAXYTL--SAQDEVFSLAFSPN--RYWLAAATATGIKVFSL---DPQ 268
Query: 179 FTLD-------AHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
+ +D + K + V D L G D+ +VW T
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQV 148
E H ++ +A P +LS+S D + W D +K + + F+GHSH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGS 206
T D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATT 260
D T KVW + + C+ TL GH VS V P + II+ D V+ W+
Sbjct: 127 RDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
+++E IG+ S+ + +GT++ G++ +
Sbjct: 186 FQIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 220
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH VM V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDID 116
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 117 KK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 268 N 268
+
Sbjct: 235 S 235
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 158 PNEKADDDSVT--IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 119 DDMLIKLWDW-EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
D I LW+ K M T + V + F+P + +A+ IK+++L DP
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYWLAAATATGIKVFSL---DP 267
Query: 178 NFTLD-------AHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
+ +D + K + V D L G D+ +VW T
Sbjct: 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 95 FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQVT 149
E H ++ +A P +LS+S D + W D +K + + F+GHSH V T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGSD 207
D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 73 LTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGSR 127
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATTY 261
D T KVW + + C+ TL GH VS V P + II+ D V+ W+ +
Sbjct: 128 DKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 262 RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
++E IG+ S+ + +GT++ G++ +
Sbjct: 187 QIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 220
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH VM V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDID 116
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 117 KK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 268 N 268
+
Sbjct: 235 S 235
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 27/230 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 158 PNEKADDDSVT--IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 119 DDMLIKLWDW-EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
D I LW+ K M T + V + F+P + +A+ IK+++L DP
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYWLAAATATGIKVFSL---DP 267
Query: 178 NFTLD---------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
+ +D + + V D L G D+ +VW T
Sbjct: 268 QYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQV 148
E H ++ +A P +LS+S D + W D +K + + F+GHSH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGS 206
T D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 72 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 126
Query: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATT 260
D T KVW + + C+ TL GH VS V P + II+ D V+ W+
Sbjct: 127 RDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
+++E IG+ S+ + +GT++ G++ +
Sbjct: 186 FQIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 220
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH VM V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDID 116
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 117 KK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 268 N 268
+
Sbjct: 235 S 235
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 27/226 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 158 PNEKADDDSVT--IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 119 DDMLIKLWDW-EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
D I LW+ K M T + V + F+P + +A+ IK+++L DP
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYWLAAATATGIKVFSL---DP 267
Query: 178 NFTLD-------AHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVW 214
+ +D + K + V D L G D+ +VW
Sbjct: 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 13/255 (5%)
Query: 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK 69
++ Q E + SV ++ S V +W+ Q Q ++ T R
Sbjct: 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGSLSWNS 199
Query: 70 QWVVAGADDMFIRVYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD- 127
+ +G+ I ++ + V H+ + + P ++ S +D L+ +W
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 128 --WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA--SLDRTIKIWNLGSPDPNFTLDA 183
E GW+ Q F H V V + P +N A+ + DR I+IWN+ S +DA
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319
Query: 184 HQKGVNCVDYFTGGDKPYLITGSD--DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
H + C ++ K LI+G + +W Y T + V L+GHT V ++ P+
Sbjct: 320 HSQ--VCSILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 376
Query: 242 PIIITGSEDGTVRIW 256
+ + + D T+R+W
Sbjct: 377 ATVASAAADETLRLW 391
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 74 AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133
G D IR++N + + +AH+ + + P ++S +L W+ M
Sbjct: 296 GGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354
Query: 134 CTQI-FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
+GH+ V+ +T +P D T ASA+ D T+++W DP
Sbjct: 355 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDP 398
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 95 FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQVT 149
E H ++ +A P +LS+S D + W D +K + + F+GHSH V T
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGSD 207
D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 73 LTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGSR 127
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATTY 261
D T KVW + + C+ TL GH VS V P + II+ D V+ W+ +
Sbjct: 128 DKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 262 RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
++E IG+ S+ + +GT++ G++ +
Sbjct: 187 QIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 220
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH VM V +
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDID 116
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 117 KK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 268 N 268
+
Sbjct: 235 S 235
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 157
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 158 PNEKADDDSVT--IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 119 DDMLIKLWDW-EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
D I LW+ K M T + V + F+P + +A+ IK+++L DP
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYWLAAATATGIKVFSL---DP 267
Query: 178 NFTLD-------AHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
+ +D + K + V D L G D+ +VW T
Sbjct: 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 13/255 (5%)
Query: 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK 69
++ Q E + SV ++ S V +W+ Q Q ++ T R
Sbjct: 153 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGSLSWNS 210
Query: 70 QWVVAGADDMFIRVYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD- 127
+ +G+ I ++ + V H+ + + P ++ S +D L+ +W
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 128 --WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA--SLDRTIKIWNLGSPDPNFTLDA 183
E GW+ Q F H V V + P +N A+ + DR I+IWN+ S +DA
Sbjct: 271 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 330
Query: 184 HQKGVNCVDYFTGGDKPYLITGSD--DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
H + C ++ K LI+G + +W Y T + V L+GHT V ++ P+
Sbjct: 331 HSQ--VCSILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 387
Query: 242 PIIITGSEDGTVRIW 256
+ + + D T+R+W
Sbjct: 388 ATVASAAADETLRLW 402
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 74 AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133
G D IR++N + + +AH+ + + P ++S +L W+ M
Sbjct: 307 GGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 365
Query: 134 CTQI-FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
+GH+ V+ +T +P D T ASA+ D T+++W DP
Sbjct: 366 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDP 409
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLW----DWEKGWMCTQIFEGHSHYVMQV 148
E H ++ +A P +LS+S D + W D +K + + F+GHSH V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK--PYLITGS 206
T D SAS D+T+++W++ + + H+ V VD DK +I+GS
Sbjct: 66 TLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI----DKKASMIISGS 120
Query: 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP------ELPIIITGSEDGTVRIWHATT 260
D T KVW + + C+ TL GH VS V P + II+ D V+ W+
Sbjct: 121 RDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV 305
+++E IG+ S+ + +GT++ G++ +
Sbjct: 180 FQIEADF---------IGH-NSNINTLTASPDGTLIASAGKDGEI 214
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
V+ F+ H+ ++ + Y LS+S D ++LWD G Q F GH VM V +
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVMSVDID 110
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF----TGGDKPYLITGSD 207
K + S S D+TIK+W + TL H V+ V D +I+ +
Sbjct: 111 KK-ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 168
Query: 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267
D K W+ GH N++ + P+ +I + +DG + +W+ + TL
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Query: 268 N 268
+
Sbjct: 229 S 229
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 27/230 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF-------EVTEL 58
E ++ V SVD+ I++ T+ +W + Q +A +V +
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVV 151
Query: 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS 118
P A + +++ +D ++ +N N F H I + P + S+
Sbjct: 152 PNEKADDDSVT--IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 209
Query: 119 DDMLIKLWDW-EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
D I LW+ K M T + V + F+P + +A+ IK+++L DP
Sbjct: 210 KDGEIMLWNLAAKKAMYTLSAQDE---VFSLAFSPN--RYWLAAATATGIKVFSL---DP 261
Query: 178 NFTLD-------AHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218
+ +D + K + V D L G D+ +VW T
Sbjct: 262 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 13/255 (5%)
Query: 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK 69
++ Q E + SV ++ S V +W+ Q Q ++ T R
Sbjct: 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGSLSWNS 119
Query: 70 QWVVAGADDMFIRVYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD- 127
+ +G+ I ++ + V H+ + + P ++ S +D L+ +W
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 128 --WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA--SLDRTIKIWNLGSPDPNFTLDA 183
E GW+ Q F H V V + P +N A+ + DR I+IWN+ S +DA
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 184 HQKGVNCVDYFTGGDKPYLITGSD--DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
H + C ++ K LI+G + +W Y T + V L+GHT V ++ P+
Sbjct: 240 HSQ--VCSILWSPHYKE-LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296
Query: 242 PIIITGSEDGTVRIW 256
+ + + D T+R+W
Sbjct: 297 ATVASAAADETLRLW 311
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 74 AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133
G D IR++N + + +AH+ + + P ++S +L W+ M
Sbjct: 216 GGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274
Query: 134 CTQI-FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177
+GH+ V+ +T +P D T ASA+ D T+++W DP
Sbjct: 275 AKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCFELDP 318
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 32/239 (13%)
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIW-NLGSPDPNFTLD------AHQKGVNCVD 192
H + V + P T+ A+ S D T+ IW S D F +D H+ V V
Sbjct: 56 AHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 193 YFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGS 248
+ D YL T S D + +W+ C+ L+ H+ +V V +HP ++ + S
Sbjct: 115 W--SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 249 EDGTVRIW--HATTYRLENTLNYGLERVWAIGYMKSSR--RIVIGYDEGTIMV--KIGRE 302
D TVRIW + + LN VW+ + K+ R+ G D+ T+ V +G +
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 303 E------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349
E P + W + I +V V A YE DGE A + L
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRAL 291
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 75/175 (42%), Gaps = 15/175 (8%)
Query: 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP--------VRSAKFVARK 69
++SV P + A + TV IW + ++ ++FE+ L V+ +
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWA-KEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 70 QWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125
++ + D + ++ + + + V + H+ ++ V HP+ + SSS D +++
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 126 W-DWEKGWMCTQIFEGHSHYVMQVTFNPKD-TNTFASASLDRTIKIWNLGSPDPN 178
W D++ W C + GH V F+ + S S D T+++W D +
Sbjct: 180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 24/90 (26%)
Query: 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIW--------------NYQSQTMAKSFEVT 56
L + S+ VK V HPSE + +S Y TV IW ++ + F+ T
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86
E R + +G+DD +RV+ Y
Sbjct: 209 EGVFR----------LCSGSDDSTVRVWKY 228
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 113 YVLSSSDDMLIKLWDW------EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
Y+LS+SDD I LWD + IF GH+ V V ++ + F S + D+
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 167 IKIW---NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW N + P+ T+DAH VNC+ + PY L TGS D T +WD +
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 312
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
K + + E H + V + P I+ S GT R H
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLH 349
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 35/186 (18%)
Query: 76 ADDMFIRVY---NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKG 131
ADD + ++ N NT +AHT + C++ +P ++L++ S D + LWD
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 312
Query: 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
+ FE H + QV ++P + AS+ DR + +W+L + + + G +
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSED 250
+ GG HTAK+ D+ ++P P II + SED
Sbjct: 373 LFIHGG-----------HTAKISDF-------------------SWNPNEPWIICSVSED 402
Query: 251 GTVRIW 256
+++W
Sbjct: 403 NIMQVW 408
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
GH +++NP SAS D TI +W++ N T H + ++ + FTG
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-----NATPKEH-RVIDAKNIFTGH 232
Query: 198 ------------DKPYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELP 242
+ + +DD +WD + T T++ HT V+ + F+P
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 243 III-TGSEDGTVRIWHATTYRLE 264
I+ TGS D TV +W +L+
Sbjct: 293 FILATGSADKTVALWDLRNLKLK 315
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 39 VCIWNYQSQTMAK---SFEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMD-KVK 93
+ IW+ ++ +K + + V F ++++A G+ D + +++ + K+
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEK--GWMCTQ-----------IFE 139
FE+H D I V P +L+SS D + +WD K T+ I
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 377
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
GH+ + ++NP + S S D +++W +
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 42/206 (20%)
Query: 173 GSPDPNFTLDAHQK---GVNCVDYFTGGDKPYLITGSDDHTAKVWD-------YQTKSCV 222
G P+ L HQK G++ G YL++ SDDHT +WD ++
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNG----YLLSASDDHTICLWDINATPKEHRVIDAK 226
Query: 223 QTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIW---HATTYRLENTLNYGLERVWAI 277
GHT V V +H L + GS +D + IW + T + +T++ V +
Sbjct: 227 NIFTGHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 278 GY---------MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE------- 321
+ S+ + V +D + +K+ E + D ++ W+ HNE
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSG 343
Query: 322 ----IQTVNIKSVGADYEVTDGERLP 343
+ ++ +G + D E P
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGP 369
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 113 YVLSSSDDMLIKLWDW------EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
Y+LS+SDD I LWD + IF GH+ V V ++ + F S + D+
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 167 IKIW---NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW N + P+ T+DAH VNC+ + PY L TGS D T +WD +
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 310
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
K + + E H + V + P I+ S GT R H
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLH 347
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 35/186 (18%)
Query: 76 ADDMFIRVY---NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKG 131
ADD + ++ N NT +AHT + C++ +P ++L++ S D + LWD
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310
Query: 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
+ FE H + QV ++P + AS+ DR + +W+L + + + G +
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSED 250
+ GG HTAK+ D+ ++P P II + SED
Sbjct: 371 LFIHGG-----------HTAKISDF-------------------SWNPNEPWIICSVSED 400
Query: 251 GTVRIW 256
+++W
Sbjct: 401 NIMQVW 406
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
GH +++NP SAS D TI +W++ N T H + ++ + FTG
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-----NATPKEH-RVIDAKNIFTGH 230
Query: 198 ------------DKPYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELP 242
+ + +DD +WD + T T++ HT V+ + F+P
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 243 III-TGSEDGTVRIWHATTYRLE 264
I+ TGS D TV +W +L+
Sbjct: 291 FILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 39 VCIWNYQSQTMAK---SFEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMD-KVK 93
+ IW+ ++ +K + + V F ++++A G+ D + +++ + K+
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEK--GWMCTQ-----------IFE 139
FE+H D I V P +L+SS D + +WD K T+ I
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 375
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
GH+ + ++NP + S S D +++W +
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 80/206 (38%), Gaps = 42/206 (20%)
Query: 173 GSPDPNFTLDAHQK---GVNCVDYFTGGDKPYLITGSDDHTAKVWD-------YQTKSCV 222
G P+ L HQK G++ G YL++ SDDHT +WD ++
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNG----YLLSASDDHTICLWDINATPKEHRVIDAK 224
Query: 223 QTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIW---HATTYRLENTLNYGLERVWAI 277
GHT V V +H L + GS +D + IW + T + +T++ V +
Sbjct: 225 NIFTGHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 278 GY---------MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE------- 321
+ S+ + V +D + +K+ E + D ++ W+ HNE
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSG 341
Query: 322 ----IQTVNIKSVGADYEVTDGERLP 343
+ ++ +G + D E P
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGP 367
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 113 YVLSSSDDMLIKLWDW------EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
Y+LS+SDD I LWD + IF GH+ V V ++ + F S + D+
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 167 IKIW---NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW N + P+ T+DAH VNC+ + PY L TGS D T +WD +
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 314
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
K + + E H + V + P I+ S GT R H
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLH 351
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 35/186 (18%)
Query: 76 ADDMFIRVY---NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKG 131
ADD + ++ N NT +AHT + C++ +P ++L++ S D + LWD
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 314
Query: 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
+ FE H + QV ++P + AS+ DR + +W+L + + + G +
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSED 250
+ GG HTAK+ D+ ++P P II + SED
Sbjct: 375 LFIHGG-----------HTAKISDF-------------------SWNPNEPWIICSVSED 404
Query: 251 GTVRIW 256
+++W
Sbjct: 405 NIMQVW 410
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 22/143 (15%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
GH +++NP SAS D TI +W++ N T H + ++ + FTG
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI-----NATPKEH-RVIDAKNIFTGH 234
Query: 198 ------------DKPYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELP 242
+ + +DD +WD + T T++ HT V+ + F+P
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 243 III-TGSEDGTVRIWHATTYRLE 264
I+ TGS D TV +W +L+
Sbjct: 295 FILATGSADKTVALWDLRNLKLK 317
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 39 VCIWNYQSQTMAK---SFEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMD-KVK 93
+ IW+ ++ +K + + V F ++++A G+ D + +++ + K+
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEK--GWMCTQ-----------IFE 139
FE+H D I V P +L+SS D + +WD K T+ I
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG 379
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
GH+ + ++NP + S S D +++W +
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 40/205 (19%)
Query: 173 GSPDPNFTLDAHQK---GVNCVDYFTGGDKPYLITGSDDHTAKVWD-------YQTKSCV 222
G P+ L HQK G++ G YL++ SDDHT +WD ++
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNG----YLLSASDDHTICLWDINATPKEHRVIDAK 228
Query: 223 QTLEGHTHNVSAVCFH-PELPIIITGSEDGTVRIW---HATTYRLENTLNYGLERVWAIG 278
GHT V V +H + + ++D + IW + T + +T++ V +
Sbjct: 229 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 288
Query: 279 Y---------MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE-------- 321
+ S+ + V +D + +K+ E + D ++ W+ HNE
Sbjct: 289 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGT 346
Query: 322 ---IQTVNIKSVGADYEVTDGERLP 343
+ ++ +G + D E P
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGP 371
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152
K H ++ +A+ + +SSS D ++LWD G + F GH V V F+P
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSP 128
Query: 153 KDTNTFASASLDRTIKIWN-LGSPD-PNFTLDAHQKGVNCVDY---FTGGDK-----PYL 202
D SA +R IK+WN LG + + H V+CV Y +K PY
Sbjct: 129 -DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187
Query: 203 ITGSDDHTAKVW--DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
+ D KVW ++Q + T + H NV+ + P I TG +D + IW
Sbjct: 188 ASVGWDGRLKVWNTNFQIR---YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 14/199 (7%)
Query: 72 VVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEK 130
++ + D +R+++ T K F H + VA P +LS+ + IKLW+ +
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 131 GWMCTQIFEGHSHYVMQVTFNP--KDTNT-------FASASLDRTIKIWNLGSPDPNFTL 181
+ E HS +V V ++P K N FAS D +K+WN + +T
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF 209
Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241
AH+ VN + G Y+ TG D +WD + Q ++ + F+P+L
Sbjct: 210 KAHESNVNHLSISPNGK--YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL 267
Query: 242 PIIITGSEDGTVRIWHATT 260
+ G++ G V+I++ T
Sbjct: 268 QWVAVGTDQG-VKIFNLMT 285
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 137 IFEGHSHYVMQVT--FNPK---DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191
I EGHS +V + F+ K D+ S S D+T+ IW L + N K +
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 192 DYFTGG-----DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246
++F + + I+ S D T ++WD +T + + GH V +V F P+ I++
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 247 GSEDGTVRIWH 257
+ +++W+
Sbjct: 136 AGAEREIKLWN 146
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 198 DKPYLITGSDDHTAKVWD-YQTKSCV------QTLEGHTHNVSAVCFHPELPIIITGSED 250
D P LI+GS D T +W Y+ + + L GH H VS + E I+ S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287
T+R+W T V+++ + +R+I+
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 113 YVLSSSDDMLIKLWDWEKGWM------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
++LS+SDD + LWD G IF GHS V V ++ + F S + D+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 167 IKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW+ S P+ +DAH VNC+ + PY L TGS D T +WD +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 308
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIW 256
K + T E H + V + P I+ S D + +W
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 30 ILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVARKQWVV-------AGADDMFI 81
+L++ TVC+W+ + K + + + V W + + ADD +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 82 RVYNY--NTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQI 137
+++ NT K + +AHT + C++ +P ++L++ S D + LWD +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--------------GSPDPNFTLDA 183
FE H + QV ++P + AS+ DR + +W+L G P+ F
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 184 HQKGVNCVDYFTGGDKPYLITG-SDDHTAKVW 214
H ++ D+ ++P++I S+D+ ++W
Sbjct: 375 HTAKIS--DFSWNPNEPWVICSVSEDNIXQIW 404
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDA------HQKGVNC 190
GH +++N + SAS D T+ +W++ + P +DA H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT---LEGHTHNVSAVCFHPELPIII-T 246
V + + + +DD +WD ++ + + ++ HT V+ + F+P I+ T
Sbjct: 235 VAWHLLHES-LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 247 GSEDGTVRIWHATTYRLE 264
GS D TV +W +L+
Sbjct: 294 GSADKTVALWDLRNLKLK 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 113 YVLSSSDDMLIKLWDWEKGWM------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
++LS+SDD + LWD G IF GHS V V ++ + F S + D+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 167 IKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW+ S P+ +DAH VNC+ + PY L TGS D T +WD +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 308
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIW 256
K + T E H + V + P I+ S D + +W
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 43/240 (17%)
Query: 30 ILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVARKQWVV-------AGADDMFI 81
+L++ TVC+W+ + K + + + V W + + ADD +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 82 RVYNY--NTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQI 137
+++ NT K + +AHT + C++ +P ++L++ S D + LWD +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
FE H + QV ++P + AS+ DR + +W+L + + + G + + GG
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIW 256
HTAK+ D+ ++P P +I + SED ++IW
Sbjct: 375 -----------HTAKISDFS-------------------WNPNEPWVICSVSEDNIMQIW 404
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 39 VCIWNYQSQTMAKSFEVTEL---PVRSAKFVARKQWVVA-GADDMFIRVYNYNTMD-KVK 93
+ IW+ +S T +K + + V F ++++A G+ D + +++ + K+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEK-GWMCTQ------------IFE 139
FE+H D I V P +L+SS D + +WD K G + I
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHG 373
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
GH+ + ++NP + S S D ++IW +
Sbjct: 374 GHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDA------HQKGVNC 190
GH +++N + SAS D T+ +W++ + P +DA H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT---LEGHTHNVSAVCFHPELPIII-T 246
V + + + +DD +WD ++ + + ++ HT V+ + F+P I+ T
Sbjct: 235 VAWHLLHES-LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 247 GSEDGTVRIWHATTYRLE 264
GS D TV +W +L+
Sbjct: 294 GSADKTVALWDLRNLKLK 311
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 8/220 (3%)
Query: 26 SEPWILASLYSGTVCIWNY--QSQTMAKSFEVTELP--VRSAKFVARKQWVVAGADDMFI 81
SE IL + SG V +W + + F E V++ + V+G D +
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQI-FE 139
+V++ + +K + AH+ + CVA P + LS +D I LWD K T+I F
Sbjct: 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK 199
VT++P+ +TFA + + N+ +PD T H + + + Y +
Sbjct: 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY-SYHSS 282
Query: 200 PYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239
P+L + S+D T V D + L H V+ V + P
Sbjct: 283 PFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSP 321
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 114 VLSSSDDMLIKLWD-WEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASLDRTIKIWN 171
+L +SD ++LW+ EK + F + H + T + D S D ++K+W+
Sbjct: 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231
L + +AH VNCV G D +L G D +WD + ++ +
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL-LWDTRKPKPATRIDFCASD 226
Query: 232 V--SAVCFHPEL-PIIITGSEDGTVRI 255
++V +HPE G E G V +
Sbjct: 227 TIPTSVTWHPEKDDTFACGDETGNVSL 253
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 25/290 (8%)
Query: 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR---VYNYNTMDKVK 93
GTV +W+ Q + + + S + + K+ ++ G D I ++ + D +
Sbjct: 39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLY 98
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153
H + ++ + V+S S D K+W ++G + + + H+ V
Sbjct: 99 TLIGHQGNVCSLSFQDGV--VISGSWDKTAKVW--KEGSLVYNL-QAHNASVWDAKVVSF 153
Query: 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213
N F +AS D+TIK+W F+ H + V + D + I+ S+D K+
Sbjct: 154 SENKFLTASADKTIKLWQNDKVIKTFS-GIHN---DVVRHLAVVDDGHFISCSNDGLIKL 209
Query: 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273
D T ++T EGH V + P I+ G ED TVRIW L+ +
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITLPAIS 268
Query: 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQ 323
+W++ S+ I++G + +V+I +E K WA +EI+
Sbjct: 269 IWSVD-CXSNGDIIVGSSDN--LVRIFSQE---------KSRWASEDEIK 306
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASLD-RTIKIWN 171
V S S D ++LW + W+ T ++ G ++ V ++ K+ F + ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQG-FLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231
DP +TL HQ V + + G +I+GS D TAKVW + S V L+ H +
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQDG----VVISGSWDKTAKVW--KEGSLVYNLQAHNAS 144
Query: 232 V---SAVCFHPELPIIITGSEDGTVRIWH 257
V V F +T S D T+++W
Sbjct: 145 VWDAKVVSFSENK--FLTASADKTIKLWQ 171
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85
SE L + T+ +W Q+ + K+F V V ++ ++D I++ +
Sbjct: 154 SENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211
Query: 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131
+T D ++ +E H ++ C+ + P ++S +D +++W E G
Sbjct: 212 XHTGDVLRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWSKENG 256
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 113 YVLSSSDDMLIKLWDWE------KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166
++LS+SDD I LWD K IF GH+ V V+++ + F S + D+
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 167 IKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPY----LITGSDDHTAKVWDYQT- 218
+ IW+ S + P+ ++DAH VNC+ + PY L TGS D T +WD +
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSF-----NPYSEFILATGSADKTVALWDLRNL 306
Query: 219 KSCVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIW 256
K + + E H + V + P I+ S D + +W
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 76 ADDMFIRVYNY---NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKG 131
ADD + +++ NT +AHT + C++ +P ++L++ S D + LWD
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL--------------GSPDP 177
+ FE H + QV ++P + AS+ DR + +W+L G P+
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 178 NFTLDAHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVW 214
F H ++ D+ ++P++I S+D+ +VW
Sbjct: 367 LFIHGGHTAKIS--DFSWNPNEPWVICSVSEDNIMQVW 402
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197
GH +++NP + SAS D TI +W++ + + K V+ FTG
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA------VPKEGKVVDAKTIFTGH 226
Query: 198 ------------DKPYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELP 242
+ + +DD +WD + T +++ HT V+ + F+P
Sbjct: 227 TAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE 286
Query: 243 III-TGSEDGTVRIWHATTYRLE 264
I+ TGS D TV +W +L+
Sbjct: 287 FILATGSADKTVALWDLRNLKLK 309
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 39 VCIWNYQSQTMAK---SFEVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMD-KVK 93
+ IW+ +S +K S + V F ++++A G+ D + +++ + K+
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 94 VFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEK-GWMCTQ------------IFE 139
FE+H D I V P +L+SS D + +WD K G + I
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG 371
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-----SPDPNFTLDAHQKG 187
GH+ + ++NP + S S D +++W + DP ++D +G
Sbjct: 372 GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQG 424
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 114/274 (41%), Gaps = 27/274 (9%)
Query: 41 IWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-----VAGADDMFIRVYNYNTMDKVKVF 95
+W ++ A + V++ VA WV + +D + ++ + + + V
Sbjct: 60 LWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVS 119
Query: 96 E----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151
+ H D + V+V + +S S D+ IK+WD + + + + H+ V V +
Sbjct: 120 KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS-YRAHAAQVTCVAAS 178
Query: 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG------DKPYLITG 205
P + F S S D I +W+ P P A Q G + Y + G
Sbjct: 179 PHKDSVFLSCSEDNRILLWDTRCPKP-----ASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233
Query: 206 SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHAT---TY 261
++ T + D ++ SCV + H+ V+ + F P +P + + SED ++ + ++ +
Sbjct: 234 DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293
Query: 262 RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295
R + ++ + W+ + S +G+D +
Sbjct: 294 RSQAHRDFVRDATWS--PLNHSLLTTVGWDHQVV 325
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 9/193 (4%)
Query: 30 ILASLYSGTVCIWNY-QSQTMAKS----FEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84
IL + SG V +W +++T+ S +E ++ V + ++ V+G+ D+ I+V+
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDI-VSTVSVLSSGTQAVSGSKDICIKVW 154
Query: 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143
+ + + AH + CVA P V LS S+D I LWD +QI
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG 214
Query: 144 YV-MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202
Y+ + ++P+ + F + T+ + + S + H + V + F+ P+L
Sbjct: 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL-VFSPHSVPFL 273
Query: 203 ITGSDDHTAKVWD 215
+ S+D + V D
Sbjct: 274 ASLSEDCSLAVLD 286
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 113 YVLSSSDDMLIKLWDWEKG-----WMCTQIF-------EGHSHYVMQVTFNPKDTNTFAS 160
Y+LS D +I L+D E + C + + H + V V + P DT F S
Sbjct: 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117
Query: 161 ASLDRTIKIWNLGSPDP----NFTLDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWD 215
+S D+T+K+W+ + NF + ++ V K L+ G+ ++ D
Sbjct: 118 SSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS-----TKHCLVAVGTRGPKVQLCD 172
Query: 216 YQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIW 256
++ SC L+GH + AV + P I+ T S D V++W
Sbjct: 173 LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 38/198 (19%)
Query: 78 DMFIRVYNYNTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133
D ++V++ NT+ VF ++ ++ V+ L V + ++L D + G
Sbjct: 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL--VAVGTRGPKVQLCDLKSG-S 177
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDY 193
C+ I +GH ++ V+++P+ A+AS D +K+W++ ++ C
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV------------RRASGC--- 222
Query: 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTV 253
LIT D H K ++++ H V+ +CF + ++T D +
Sbjct: 223 --------LIT-LDQHNGK----KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 254 RIWHATTYRLENTL-NYG 270
R+W+++ ENTL NYG
Sbjct: 270 RLWNSSNG--ENTLVNYG 285
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
V +AK R+ + G + I+V + N + ++ +AH I + P+ ++SSS
Sbjct: 99 VDTAKLQMRR--FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ 156
Query: 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
DM +K+W + G + GH V + + N SASLD TI++W G+
Sbjct: 157 DMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIH 214
Query: 180 TLDAHQK---GVNCVDYFTGGDK 199
T + + GVN + F G D+
Sbjct: 215 TFNRKENPHDGVNSIALFVGTDR 237
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 176 DPNFTLD-----AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230
D NF L AH + + +F G+ LI+ S D K+W + S +TL GH
Sbjct: 122 DSNFNLQREIDQAHVSEITKLKFFPSGEA--LISSSQDMQLKIWSVKDGSNPRTLIGHRA 179
Query: 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268
V+ + +++ S DGT+R+W T +T N
Sbjct: 180 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119
V +AK R+ + G + I+V + N + ++ +AH I + P+ ++SSS
Sbjct: 102 VDTAKLQMRR--FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ 159
Query: 120 DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
DM +K+W + G + GH V + + N SASLD TI++W G+
Sbjct: 160 DMQLKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIH 217
Query: 180 TLDAHQK---GVNCVDYFTGGDK 199
T + + GVN + F G D+
Sbjct: 218 TFNRKENPHDGVNSIALFVGTDR 240
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 176 DPNFTLD-----AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230
D NF L AH + + +F G+ LI+ S D K+W + S +TL GH
Sbjct: 125 DSNFNLQREIDQAHVSEITKLKFFPSGEA--LISSSQDMQLKIWSVKDGSNPRTLIGHRA 182
Query: 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268
V+ + +++ S DGT+R+W T +T N
Sbjct: 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 2/155 (1%)
Query: 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202
+Y+ P D T T+ IW+L +P P + C D
Sbjct: 98 NYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262
+ D VWD ++ V+ +GHT S + + + TG D TVR W R
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297
++ +++++GY + + +G + + V
Sbjct: 217 QLQQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEV 250
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 84/199 (42%), Gaps = 9/199 (4%)
Query: 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQW 71
R ++S L P ++ + T+ IW+ + T E+T P A ++
Sbjct: 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154
Query: 72 VV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130
V + D I V++ + V+ F+ HTD C+ + + + D ++ WD +
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKGVN 189
G Q + + + + P T + + ++ + +++ ++ PD + L H+ V
Sbjct: 215 GRQLQQ--HDFTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVL 269
Query: 190 CVDYFTGGDKPYLITGSDD 208
+ + G K ++ TG D+
Sbjct: 270 SLKFAYCG-KWFVSTGKDN 287
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
+R +++G+DD + ++ F HT ++ V +P S+ D I L+
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 127 DWEKGWMCTQIFE-------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174
+ G T +FE HS V +T++P D ASAS D+TIKIWN+ +
Sbjct: 218 NGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVAT 270
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPI-IITGSEDGTVRIWHATTYRLENTLNYGL 271
V+ + T + L G +++V F P P II+GS+D TV I+ ++ ++T
Sbjct: 131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190
Query: 272 ERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300
+ V ++ Y +GTI++ G
Sbjct: 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-LITGSDDHTAKVWDYQTKSCVQTLEG 227
+++ G+ + N T A + +N VD+ +P+ +I+GSDD+T +++ T
Sbjct: 133 LFDTGTSNGNLTGQA--RAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188
Query: 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258
HT V +V ++P+ + + DGT+ +++
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 26 SEPWILASLYSGTVCIWN-YQSQTMAKSFEVTELPVR-SAKFVA---RKQWVVAGADDMF 80
S+P LA G + + Y+ + ++TE+P+ ++ VA KQ+V G D
Sbjct: 412 SQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK 471
Query: 81 IRVYNYN--TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQ 136
+ VY + ++ +VK H I VA +++++ + + + T
Sbjct: 472 VHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAH-QKGVNCVDY 193
+ H+ V V+++P D A+ SLD ++ +WN+ P P AH VN V +
Sbjct: 531 SWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 589
Query: 194 FTGGDKPYLITGSDDHTAKVWD 215
++ +++ D K W+
Sbjct: 590 L---NETTIVSAGQDSNIKFWN 608
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 14/185 (7%)
Query: 85 NYNTMDKVKVFEAHTDYIRCVAVHP-TLP--YVLSSSDDMLIKLWD-WEKGWMCTQIFEG 140
N+N M ++V + D I C++ P TLP ++++ S ++ W+ + G + +
Sbjct: 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM 84
Query: 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKP 200
H+ V+ V ++ + F +AS D+T K+W+L S + + H V + + +
Sbjct: 85 HTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIHWIKAPNYS 142
Query: 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
++TGS D T K WD ++ + + L+ A +P ++ +E G +
Sbjct: 143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM--AVVATAERGLI------V 194
Query: 261 YRLEN 265
Y+LEN
Sbjct: 195 YQLEN 199
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---------PNFTLDAHQKG 187
+ GH+ V+ + + P + N AS S D T+ +W + PD P TL+ H K
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI--PDGGLVLPLREPVITLEGHTKR 133
Query: 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPIII 245
V V + L++ D+ VWD T + V TL + H + +V + + +I
Sbjct: 134 VGIVAWHPTAQN-VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192
Query: 246 TGSEDGTVRI 255
T D VR+
Sbjct: 193 TSCRDKRVRV 202
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 62 SAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSS-SD 119
+ KF+A G + + + +DK V + HT + +A P V++S S+
Sbjct: 43 NPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSE 102
Query: 120 DMLIKLWDWEKGWMCTQI------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
D + +W+ G + + EGH+ V V ++P N SA D I +W++G
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Query: 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QTLEG 227
+ TL D H + VD+ D + T D +V + + + V + EG
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG 220
Query: 228 HTHNVSAVCFHPELPIIITG 247
T V AV F E I+ TG
Sbjct: 221 -TRPVHAV-FVSEGKILTTG 238
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 101 YIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK--DTNT 157
++R V P + +V++ D I +D + G I E V F D+
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQK 266
Query: 158 FASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
FA+ D TI++W++ + +TLD Q G V G+ +I+ S D T ++
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE 325
Query: 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275
++T+ GH ++A+ +P +I+GS DG + W +++ +++ +
Sbjct: 326 LGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS-----NLIV 376
Query: 276 AIGYMKSSRRIVIGYDE-----GTIMVKIGREEPVASMDNSG 312
++ K+ I +D+ G + G + VAS +N G
Sbjct: 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---------PNFTLDAHQKGVNC 190
GH+ V+ + + P + N AS S D T+ +W + PD P TL+ H K V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI--PDGGLVLPLREPVITLEGHTKRVGI 136
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPIIITGS 248
V + L G D+ VWD T + V TL + H + +V + + +I T
Sbjct: 137 VAWHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 249 EDGTVRI 255
D VR+
Sbjct: 196 RDKRVRV 202
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 62 SAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSS-SD 119
+ KF+A G + + + +DK V + HT + +A P V++S S+
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102
Query: 120 DMLIKLWDWEKGWMCTQI------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
D + +W+ G + + EGH+ V V ++P N SA D I +W++G
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162
Query: 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QTLEG 227
+ TL D H + VD+ D + T D +V + + + V + EG
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG 220
Query: 228 HTHNVSAVCFHPELPIIITG 247
T V AV F E I+ TG
Sbjct: 221 -TRPVHAV-FVSEGKILTTG 238
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 101 YIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK--DTNT 157
++R V P + +V++ D I +D + G I E V F D+
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQK 266
Query: 158 FASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
FA+ D TI++W++ + +TLD Q G V G+ +I+ S D T ++
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-RIISLSLDGTLNFYE 325
Query: 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVW 275
++T+ GH ++A+ +P +I+GS DG + W +++ +++ +
Sbjct: 326 LGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQDHS-----NLIV 376
Query: 276 AIGYMKSSRRIVIGYDE-----GTIMVKIGREEPVASMDNSG 312
++ K+ I +D+ G + G + VAS +N G
Sbjct: 377 SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 69/254 (27%)
Query: 66 VARKQW--VVAGADDMFIRVYN-YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
+ R W V G F+ + Y + K F+ + HP+ V S D++
Sbjct: 87 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIM 146
Query: 123 IKLWDW---EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD--------------- 164
LW++ +K I G S + + FNP +TN F ++S++
Sbjct: 147 --LWNFGIKDKPTFIKGIGAGGS--ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 202
Query: 165 ----RTIKIW-----------------NLGS-------PDPNFTLDAHQKGVN------C 190
TI IW N+G+ + L H+K V C
Sbjct: 203 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPC 262
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPELPIIITG 247
D+F L T S D T K+WD + K+ H H V+A CF P+ ++T
Sbjct: 263 CDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 315
Query: 248 SEDGTVRIWHATTY 261
+ +R++ A+ +
Sbjct: 316 DQKSEIRVYSASQW 329
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 37/266 (13%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILA-SLYSGTVCIWNY---QSQTMAKSF----EVTE 57
I +K A R S+ HP+ P +A G + +WN+ T K +T
Sbjct: 111 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG 170
Query: 58 L---PVRSAKFVARKQWVVAGADDM---FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111
L P+ + +F A D +RV+ + D + ++ D V+ +
Sbjct: 171 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA--SSDTINIWFCSLD----VSASSRM 224
Query: 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
+ ++++ D ++ W H V V NP A+AS+D+T+KIW+
Sbjct: 225 VVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 280
Query: 172 L----GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
L G ++L H+ VN + G + L+T +V+ C L
Sbjct: 281 LRQVRGKASFLYSL-PHRHPVNAACFSPDGAR--LLTTDQKSEIRVYSASQWDCPLGLIP 337
Query: 228 HTH------NVSAVCFHPELPIIITG 247
H H +HP +I+ G
Sbjct: 338 HPHRHFQHLTPIKAAWHPRYNLIVVG 363
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 69/254 (27%)
Query: 66 VARKQW--VVAGADDMFIRVYN-YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
+ R W V G F+ + Y + K F+ + HP+ V S D++
Sbjct: 86 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIM 145
Query: 123 IKLWDW---EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD--------------- 164
LW++ +K I G S + + FNP +TN F ++S++
Sbjct: 146 --LWNFGIKDKPTFIKGIGAGGS--ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201
Query: 165 ----RTIKIW-----------------NLGS-------PDPNFTLDAHQKGVN------C 190
TI IW N+G+ + L H+K V C
Sbjct: 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPC 261
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPELPIIITG 247
D+F L T S D T K+WD + K+ H H V+A CF P+ ++T
Sbjct: 262 CDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 248 SEDGTVRIWHATTY 261
+ +R++ A+ +
Sbjct: 315 DQKSEIRVYSASQW 328
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 37/266 (13%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILA-SLYSGTVCIWNY---QSQTMAKSF----EVTE 57
I +K A R S+ HP+ P +A G + +WN+ T K +T
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG 169
Query: 58 L---PVRSAKFVARKQWVVAGADDM---FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111
L P+ + +F A D +RV+ + D + ++ D V+ +
Sbjct: 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA--SSDTINIWFCSLD----VSASSRM 223
Query: 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
+ ++++ D ++ W H V V NP A+AS+D+T+KIW+
Sbjct: 224 VVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279
Query: 172 L----GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
L G ++L H+ VN + G + L+T +V+ C L
Sbjct: 280 LRQVRGKASFLYSL-PHRHPVNAACFSPDGAR--LLTTDQKSEIRVYSASQWDCPLGLIP 336
Query: 228 HTH------NVSAVCFHPELPIIITG 247
H H +HP +I+ G
Sbjct: 337 HPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 95/254 (37%), Gaps = 69/254 (27%)
Query: 66 VARKQW--VVAGADDMFIRVYN-YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122
+ R W V G F+ + Y + K F+ + HP+ V S D++
Sbjct: 86 LGRASWPSVQQGLQQSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIM 145
Query: 123 IKLWDW---EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD--------------- 164
LW++ +K I G S + + FNP +TN F ++S++
Sbjct: 146 --LWNFGIKDKPTFIKGIGAGGS--ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201
Query: 165 ----RTIKIW-----------------NLGS-------PDPNFTLDAHQKGVN------C 190
TI IW N+G+ + L H+K V C
Sbjct: 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPC 261
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPELPIIITG 247
D+F L T S D T K+WD + K+ H H V+A CF P+ ++T
Sbjct: 262 CDWF-------LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 248 SEDGTVRIWHATTY 261
+ +R++ A+ +
Sbjct: 315 DQKSEIRVYSASQW 328
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 100/266 (37%), Gaps = 37/266 (13%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILA-SLYSGTVCIWNY---QSQTMAKSF----EVTE 57
I +K A R S+ HP+ P +A G + +WN+ T K +T
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITG 169
Query: 58 L---PVRSAKFVARKQWVVAGADDM---FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111
L P+ + +F A D +RV+ + D + ++ D V+ +
Sbjct: 170 LKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA--SSDTINIWFCSLD----VSASSRM 223
Query: 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171
+ ++++ D ++ W H V V NP A+AS+D+T+KIW+
Sbjct: 224 VVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279
Query: 172 L----GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227
L G ++L H+ VN + G + L+T +V+ C L
Sbjct: 280 LRQVRGKASFLYSL-PHRHPVNAACFSPDGAR--LLTTDQKSEIRVYSASQWDCPLGLIP 336
Query: 228 HTH------NVSAVCFHPELPIIITG 247
H H +HP +I+ G
Sbjct: 337 HPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 24/239 (10%)
Query: 30 ILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDMFIRVYNYNT 88
++A V +WN S +++ E E V S K+ ++ G + + +Y+ +
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147
K++ H + C++ + +VLSS S I D +GHS V
Sbjct: 166 QTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222
Query: 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDY--------FTGGDK 199
+ + D AS D ++IW+ S P FT H V V + TGG
Sbjct: 223 LAWR-SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-- 279
Query: 200 PYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT--GSEDGTVRIW 256
G+ D W+ T + V T++ + V+++ + P I++ G D + IW
Sbjct: 280 -----GTMDKQIHFWNAATGARVNTVDAGSQ-VTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL 181
+ +W+ + G + S YV V ++ +F S L + + I+++ S T+
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTM 172
Query: 182 DAHQKGVNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQTKSCVQTLEGHTHNVSAVC 236
HQ V C+ + ++ L +GS H ++ ++Q + TL+GH+ V +
Sbjct: 173 AGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQ----IGTLQGHSSEVCGLA 224
Query: 237 FHPELPIIITGSEDGTVRIWHA 258
+ + + +G D V+IW A
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDA 246
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 180 TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239
TL H V + + + G + L +G +D+ ++WD ++ T H V AV + P
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQ--LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 240 ---ELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272
L G+ D + W+A T NT++ G +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ 305
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 25/173 (14%)
Query: 108 HPTLPYVLSS-SDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLD 164
HP +L+S S D + +W E G W + HS V V + P + AS D
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 165 RTIKIWNL---GSPDPNFTLDAHQKGVNCVDYFTG-----------GDKPYLITGSDDHT 210
+ + G+ P +DAH GVN + + +TG D+
Sbjct: 123 GKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 211 AKVWDY----QTKSCVQTLEGHTHNVSAVCFHPELPI---IITGSEDGTVRIW 256
K+W Y QT TLEGH+ V V + P + + + + S+D T IW
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEA----HTDYIRCVAVHPTL---PYVLSSSDDM 121
+++V GAD++ ++++ YN+ + V E+ H+D++R VA PT+ Y+ S S D
Sbjct: 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 122 LIKLW--DWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+W D E+G W T + E V+ N A + D + +W
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 48/227 (21%)
Query: 94 VFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-----VMQ 147
+ E + I AV P PY+++ SD +IK+W+ K + +++ Y V Q
Sbjct: 58 LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNL-KEIIVGEVYSSSLTYDCSSTVTQ 116
Query: 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC----------------- 190
+T P + + FA +S D I + + ++ ++ K +NC
Sbjct: 117 ITMIP-NFDAFAVSSKDGQIIVLKVN----HYQQESEVKFLNCECIRKINLKNFGKNEYA 171
Query: 191 --VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVCFHPELPIIIT 246
+ F +K L+ ++ ++D +T +Q +E + VS++C E ++I
Sbjct: 172 VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL 231
Query: 247 GSEDGTVRIW---------------HATTYRLENTLNYGLERVWAIG 278
G+ G + IW HA +E YG V +G
Sbjct: 232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LDAHQKGVNC 190
C + + GH + + ++ F+P+D N S S D +++WN+ + ++ H+ V
Sbjct: 102 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 161
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226
DY G+K +++ DH+ K+W +K + ++
Sbjct: 162 ADYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG 131
VAG+ + IR+ N TM +K + H + I + HP P +LS S D ++LW+ +
Sbjct: 85 VAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
Query: 132 WMCTQIF---EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174
+ IF EGH V+ ++ S +D ++K+W + S
Sbjct: 144 TL-VAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINS 187
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 182 DAHQKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
DA + C Y + P L ++ + T C++ GH + ++ + FHP
Sbjct: 62 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 121
Query: 241 LP-IIITGSEDGTVRIWHATT 260
P ++++ S+D +R+W+ T
Sbjct: 122 DPNLLLSVSKDHALRLWNIQT 142
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LDAHQKGVNC 190
C + + GH + + ++ F+P+D N S S D +++WN+ + ++ H+ V
Sbjct: 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226
DY G+K +++ DH+ K+W +K + ++
Sbjct: 167 ADYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG 131
VAG+ + IR+ N TM +K + H + I + HP P +LS S D ++LW+ +
Sbjct: 90 VAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
Query: 132 WMCTQIF---EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174
+ IF EGH V+ ++ S +D ++K+W + S
Sbjct: 149 TL-VAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINS 192
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 182 DAHQKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
DA + C Y + P L ++ + T C++ GH + ++ + FHP
Sbjct: 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 126
Query: 241 LP-IIITGSEDGTVRIWHATT 260
P ++++ S+D +R+W+ T
Sbjct: 127 DPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LDAHQKGVNC 190
C + + GH + + ++ F+P+D N S S D +++WN+ + ++ H+ V
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226
DY G+K +++ DH+ K+W +K + ++
Sbjct: 166 ADYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG 131
VAG+ + IR+ N TM +K + H + I + HP P +LS S D ++LW+ +
Sbjct: 89 VAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 132 WMCTQIF---EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174
+ IF EGH V+ ++ S +D ++K+W + S
Sbjct: 148 TL-VAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINS 191
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 182 DAHQKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
DA + C Y + P L ++ + T C++ GH + ++ + FHP
Sbjct: 66 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 125
Query: 241 LP-IIITGSEDGTVRIWHATT 260
P ++++ S+D +R+W+ T
Sbjct: 126 DPNLLLSVSKDHALRLWNIQT 146
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LDAHQKGVNC 190
C + + GH + + ++ F+P+D N S S D +++WN+ + ++ H+ V
Sbjct: 106 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 165
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226
DY G+K +++ DH+ K+W +K + ++
Sbjct: 166 ADYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG 131
VAG+ + IR+ N TM +K + H + I + HP P +LS S D ++LW+ +
Sbjct: 89 VAGSRGI-IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 132 WMCTQIF---EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174
+ IF EGH V+ ++ S +D ++K+W + S
Sbjct: 148 TL-VAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINS 191
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 182 DAHQKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
DA + C Y + P L ++ + T C++ GH + ++ + FHP
Sbjct: 66 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 125
Query: 241 LP-IIITGSEDGTVRIWHATT 260
P ++++ S+D +R+W+ T
Sbjct: 126 DPNLLLSVSKDHALRLWNIQT 146
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LDAHQKGVNC 190
C + + GH + + ++ F+P+D N S S D +++WN+ + ++ H+ V
Sbjct: 143 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 202
Query: 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226
DY G+K +++ DH+ K+W +K + ++
Sbjct: 203 ADYDLLGEK--IMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98
C W Y S T S +A VAG+ + IR+ N TM +K + H
Sbjct: 110 TCAWTYDSNT-------------SHPLLA-----VAGSRGI-IRIINPITMQCIKHYVGH 150
Query: 99 TDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIF---EGHSHYVMQVTFNPKD 154
+ I + HP P +LS S D ++LW+ + + IF EGH V+ ++
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDEVLSADYDLL- 208
Query: 155 TNTFASASLDRTIKIWNLGS 174
S +D ++K+W + S
Sbjct: 209 GEKIMSCGMDHSLKLWRINS 228
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 182 DAHQKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240
DA + C Y + P L ++ + T C++ GH + ++ + FHP
Sbjct: 103 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR 162
Query: 241 LP-IIITGSEDGTVRIWHATT 260
P ++++ S+D +R+W+ T
Sbjct: 163 DPNLLLSVSKDHALRLWNIQT 183
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 25/173 (14%)
Query: 108 HPTLPYVLSS-SDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASLD 164
HP +L+S S D + +W E G W + HS V V + P + AS D
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 165 RTIKIWNL---GSPDPNFTLDAHQKGVNCVDYFTG---------GDKPY--LITGSDDHT 210
+ + G+ P +DAH GVN + G K +TG D+
Sbjct: 125 GKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 211 AKVWDY----QTKSCVQTLEGHTHNVSAVCFHPELPI---IITGSEDGTVRIW 256
K+W Y QT TLEGH+ V V + P + + + + S+D T IW
Sbjct: 184 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEA----HTDYIRCVAVHPTL---PYVLSSSDDM 121
+++V GAD++ ++++ YN+ + V E+ H+D++R VA PT+ Y+ S S D
Sbjct: 173 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 122 LIKLW--DWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+W D E+G W T + E V+ N A + D + +W
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 103 RCVAVHPTLPYVLSS-SDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTN-TFA 159
R HP +L+S S D + +W E G W + HS V V + P +
Sbjct: 58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLL 117
Query: 160 SASLDRTIKIWNL---GSPDPNFTLDAHQKGVNCVDYFTG---------GDKPY--LITG 205
AS D + + G+ P +DAH GVN + G K +TG
Sbjct: 118 VASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 206 SDDHTAKVWDY----QTKSCVQTLEGHTHNVSAVCFHPELPI---IITGSEDGTVRIW 256
D+ K+W Y QT TLEGH+ V V + P + + + + S+D T IW
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEA----HTDYIRCVAVHPTL---PYVLSSSDDM 121
+++V GAD++ ++++ YN+ + V E+ H+D++R VA PT+ Y+ S S D
Sbjct: 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 122 LIKLW--DWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+W D E+G W T + E V+ N A + D + +W
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 25/178 (14%)
Query: 103 RCVAVHPTLPYVLSS-SDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFA- 159
R HP +L+S S D + +W E G W + HS V V + P +
Sbjct: 58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 117
Query: 160 SASLDRTIKIWNL---GSPDPNFTLDAHQKGVNCVDYFTG---------GDKPY--LITG 205
AS D + + G+ P +DAH GVN + G K +TG
Sbjct: 118 VASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 206 SDDHTAKVWDY----QTKSCVQTLEGHTHNVSAVCFHPELPI---IITGSEDGTVRIW 256
D+ K+W Y QT TLEGH+ V V + P + + + + S+D T IW
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEA----HTDYIRCVAVHPTL---PYVLSSSDDM 121
+++V GAD++ ++++ YN+ + V E+ H+D++R VA PT+ Y+ S S D
Sbjct: 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 122 LIKLW--DWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+W D E+G W T + E V+ N A + D + +W
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 25/178 (14%)
Query: 103 RCVAVHPTLPYVLSS-SDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTN-TFA 159
R HP +L+S S D + +W E G W + HS V V + P +
Sbjct: 58 RVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLL 117
Query: 160 SASLDRTIKIWNL---GSPDPNFTLDAHQKGVNCVDYFTG---------GDKPY--LITG 205
AS D + + G+ P +DAH GVN + G K +TG
Sbjct: 118 VASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 206 SDDHTAKVWDY----QTKSCVQTLEGHTHNVSAVCFHPELPI---IITGSEDGTVRIW 256
D+ K+W Y QT TLEGH+ V V + P + + + S+D T IW
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEA----HTDYIRCVAVHPTL---PYVLSSSDDM 121
+++V GAD++ ++++ YN+ + V E+ H+D++R VA PT+ Y S S D
Sbjct: 171 RKFVTGGADNL-VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDR 229
Query: 122 LIKLW--DWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170
+W D E+G W T + E V+ N A + D + +W
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC--VDYFTGG 197
GH + QV +N K+ + S S D + +W + + TLD H + VD FT
Sbjct: 30 GHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-- 86
Query: 198 DKPYLITGSDDHTAKVWDYQTKSCVQT 224
Y +TGS D++ K+WD CV T
Sbjct: 87 --KYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232
GS L H++ + V Y GD L + S D +A VW + TL+GHT +
Sbjct: 20 GSHMKAIKLTGHERPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
Query: 233 SAV---CFHPELPIIITGSEDGTVRIW 256
++ CF +TGS D ++++W
Sbjct: 78 WSIDVDCF---TKYCVTGSADYSIKLW 101
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 22/212 (10%)
Query: 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLS 116
E P+ K+ + + + D V+ +++ + HT I + V Y ++
Sbjct: 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVT 91
Query: 117 SSDDMLIKLWDWEKGWMCTQI-----------FEGHSHYVM----QVTFNPKDTNTFASA 161
S D IKLWD G C F +Y + V NP N +
Sbjct: 92 GSADYSIKLWDVSNG-QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150
Query: 162 SLDRTIKIWNLGSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219
T ++ + S +P + H+ + T G Y+I G D +D
Sbjct: 151 RDSATHELTKV-SEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNN 207
Query: 220 -SCVQTLEGHTHNVSAVCFHPELPIIITGSED 250
V +++ H ++S + F P+L IT S D
Sbjct: 208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 56/127 (44%)
Query: 635 AIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA 694
A++ DP RF+LA++ G L+ A + A ++ W++L + A++ G +AE +
Sbjct: 1 ALQFVQDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQ 60
Query: 695 MDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPE 754
D +SK+ ++A+ + L F ++ + E +P
Sbjct: 61 HSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL 120
Query: 755 AALMARS 761
A +A++
Sbjct: 121 AYAVAKA 127
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 102 IRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160
+ CV HP +V+++ D ++ +WD +G M + + H + +V F+P + +
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFT 298
Query: 161 ASLDRTIKIWNLGSPDPNFTLDAHQKG 187
S D ++ W+ + P + HQ G
Sbjct: 299 CSEDGSLWHWDASTDVPEKSSLFHQGG 325
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 149 TFNPKDTNTFASASLDRT-----------IKIWNL----GSPDPNFTLDAHQKGVNCVDY 193
T + D++T + + RT +KIW+ P +L + ++CVD
Sbjct: 185 TIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDR 244
Query: 194 FTGGDKPYLITGSDDHTAKVWDY-QTKSCVQTLEGHTHNVSAVCFHPELP-IIITGSEDG 251
+ + TG D +WD Q V L+ H + V FHP P + T SEDG
Sbjct: 245 HPN-QQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDG 303
Query: 252 TVRIWHATT 260
++ W A+T
Sbjct: 304 SLWHWDAST 312
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158
T+ + C+A +++ ++ ++LW+ K + H ++ V +N KD
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWN-KDGTHI 164
Query: 159 ASASLDRTIKIWNL--GSPDPNFTL-DAHQKGVNCVDYFTGG----------DKPYLITG 205
S ++ +WN+ G+ +F L + +N ++ G D ++I G
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224
Query: 206 SDDHTAKVWDYQT--KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL 263
++ YQ K+ L GH +S + F+ ++++ S+DGT+RIWH
Sbjct: 225 P---KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 264 ENTLNYG 270
+N YG
Sbjct: 282 QNCF-YG 287
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 41 IWNYQSQTMAKSFEVTELPVRS---------AKFVARKQWVVAGADDMFI------RVYN 85
+WN S T+ + FE+ E S +WV DD F+ ++
Sbjct: 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV---DDDKFVIPGPKGAIFV 231
Query: 86 YNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143
Y +K + H I + + T +LS+SDD +++W G F GHS
Sbjct: 232 YQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQ 290
Query: 144 YVMQVTFNPKDTNTFASASLDRTIKIWNL 172
++ ++ D S S+D ++++W+L
Sbjct: 291 SIVSASWVGDD--KVISCSMDGSVRLWSL 317
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213
D + F I ++ + P L H ++ +++ L++ SDD T ++
Sbjct: 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF--NDTNKLLLSASDDGTLRI 273
Query: 214 WDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
W + GH+ ++ + + + +I+ S DG+VR+W
Sbjct: 274 WHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLW 315
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 72/187 (38%), Gaps = 34/187 (18%)
Query: 24 HPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVT--ELPVRSAKFVARKQWVV--AGADD 78
HP ILAS Y V IW ++ T KS E + V S + ++ G+ D
Sbjct: 67 HPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 79 MFIRVYNY---NTMDKVKVFEAHTDYIRCVAV-------------HPT------LPYVLS 116
I + Y + K+ AHT I C AV HP+ + S
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHT--IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 117 SSDDMLIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPK---DTNTFASASLDRTIKIWN 171
D LIKLW E+ W Q E HS +V V + P T+T AS S D + IW
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 172 LGSPDPN 178
N
Sbjct: 245 CDDASSN 251
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 201 YLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPEL------PIIITGSEDGTV 253
YL TG +W+ + V +++GH ++A+ L P I+TGS DGTV
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 254 RIWHA-----TTYRLENTLNYGLERVWAI----GYMKSSRRIVIGYDEGTI 295
++W +E W + Y + R + GYD G I
Sbjct: 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDI 192
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 30/263 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILA-SLYSGTVCIWNYQSQT-------MAKSFEVTE 57
++ R + RV S++ HP+ P +A G + +W+Y Q M +T
Sbjct: 63 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITG 122
Query: 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT--DYIRCVAVHPTLPYVL 115
+ + +F + +V + +R ++ + ++VF DY C +L
Sbjct: 123 M--KFNQFNTNQLFVSSIRGATTLRDFSGSV---IQVFAKTDSWDYWYCCVDVSVSRQML 177
Query: 116 SSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
++ D L G +IF+ H V FNP+ A++S+D T+K+W+L
Sbjct: 178 ATGDSTGRLL---LLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
Query: 174 S-PDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230
+ D N + H+K VN YF D L+T + +V+ S + H H
Sbjct: 235 NIKDKNSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 293
Query: 231 ------NVSAVCFHPELPIIITG 247
+HP +I+ G
Sbjct: 294 RQFQHLTPIKATWHPMYDLIVAG 316
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 109/263 (41%), Gaps = 30/263 (11%)
Query: 6 EIKRKLAQRSERVKSVDLHPSEPWILA-SLYSGTVCIWNYQSQT-------MAKSFEVTE 57
++ R + RV S++ HP+ P +A G + +W+Y Q M +T
Sbjct: 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITG 123
Query: 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT--DYIRCVAVHPTLPYVL 115
+ + +F + +V + +R ++ + ++VF DY C +L
Sbjct: 124 M--KFNQFNTNQLFVSSIRGATTLRDFSGSV---IQVFAKTDSWDYWYCCVDVSVSRQML 178
Query: 116 SSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173
++ D L G +IF+ H V FNP+ A++S+D T+K+W+L
Sbjct: 179 ATGDSTGRLL---LLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
Query: 174 S-PDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230
+ D N + H+K VN YF D L+T + +V+ S + H H
Sbjct: 236 NIKDKNSYIAEMPHEKPVNAA-YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH 294
Query: 231 ----NVSAV--CFHPELPIIITG 247
+++ + +HP +I+ G
Sbjct: 295 RQFQHLTPIKATWHPMYDLIVAG 317
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 21/156 (13%)
Query: 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG----SPDPNFTLDAHQKGVNCVD- 192
F HS V V FN K N AS + I IW++ SP N+T + ++ VD
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-NYTPLTPGQSMSSVDE 167
Query: 193 ----YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL------EGHTHNVSAVCFHPELP 242
+ + + A +WD + K V L G +S V +HP+
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 243 III---TGSE-DGTVRIWHATTYRLE-NTLNYGLER 273
+ TGS+ D ++ IW TLN G ++
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK 263
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 470 YWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529
W + L A + +L +R ++ + S P+ ++GV++ + L + + +R L
Sbjct: 314 LWIKTCSLTAASCPYFCSVLTKSRSLLELQM-SSNPLGDEGVQELCKALSQPDTVLRE-L 371
Query: 530 WVGDCFIYNNSSWRL 544
W+GDC + N+ L
Sbjct: 372 WLGDCDVTNSGCSSL 386
>pdb|1C7G|A Chain A, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|B Chain B, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|C Chain C, Tyrosine Phenol-Lyase From Erwinia Herbicola
pdb|1C7G|D Chain D, Tyrosine Phenol-Lyase From Erwinia Herbicola
Length = 456
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 713 ISKLASLAKEQGKNNVAFLCL 733
++KLA+L KE+G N+A++CL
Sbjct: 160 LNKLATLIKEKGAENIAYICL 180
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE---KGWMCTQI----FEGHSHYVMQVT 149
AHT +I ++++ LS+ DD+ I LW E + + I E + +
Sbjct: 175 AHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE 233
Query: 150 FNPKDTNTFASASLDRTIKIWNL 172
F+P NTF +S TI++ ++
Sbjct: 234 FHPNSCNTFVYSSSKGTIRLCDM 256
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294
V F E+ ++ ED I T + EN YG W IG++KS + ++ E +
Sbjct: 67 VPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDW-IGFLKSLKSLIPEVKEKS 125
Query: 295 IMV----KIGREEPVASMDNSGKI-IWAKHNE-----IQTVNIKSVGADYEVTDGERLPL 344
I+V R A + K+ +W + E Q ++ V + EV D ++ +
Sbjct: 126 ILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIV 185
Query: 345 AVKELGTCDLYPQSLKHN 362
+G D P+ ++
Sbjct: 186 NTTSVGLKDEDPEIFNYD 203
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294
V F E+ ++ ED I T + EN YG W IG++KS + ++ E +
Sbjct: 73 VPFKEEIIPLLDYVEDTAKEIGAVNTVKFENGKAYGYNTDW-IGFLKSLKSLIPEVKEKS 131
Query: 295 IMV----KIGREEPVASMDNSGKI-IWAKHNE-----IQTVNIKSVGADYEVTDGERLPL 344
I+V R A + K+ +W + E Q ++ V + EV D ++ +
Sbjct: 132 ILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIV 191
Query: 345 AVKELGTCDLYPQSLKHN 362
+G D P+ ++
Sbjct: 192 NTTSVGLKDEDPEIFNYD 209
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTF-NP 152
H D + V +V + S D IK++ +K W + + H ++ + + +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 153 KDTNTFASASLDRTIKIW 170
+ ASAS D+T+K+W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTF-NP 152
H D + V +V + S D IK++ +K W + + H ++ + + +P
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 153 KDTNTFASASLDRTIKIW 170
+ ASAS D+T+K+W
Sbjct: 67 EYGRIIASASYDKTVKLW 84
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTF-NP 152
H D + V +V + S D IK++ +K W + + H ++ + + +P
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 153 KDTNTFASASLDRTIKIW 170
+ ASAS D+T+K+W
Sbjct: 69 EYGRIIASASYDKTVKLW 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,070,220
Number of Sequences: 62578
Number of extensions: 1109904
Number of successful extensions: 3795
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2557
Number of HSP's gapped (non-prelim): 425
length of query: 915
length of database: 14,973,337
effective HSP length: 108
effective length of query: 807
effective length of database: 8,214,913
effective search space: 6629434791
effective search space used: 6629434791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)