Query 002502
Match_columns 915
No_of_seqs 1090 out of 4658
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 6E-148 1E-152 1124.5 73.7 793 3-796 1-794 (794)
2 KOG0292 Vesicle coat complex C 100.0 1.9E-84 4E-89 684.5 70.6 721 8-767 2-771 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 5.7E-69 1.2E-73 573.5 41.9 433 320-764 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 7.6E-49 1.6E-53 378.4 29.5 330 7-379 107-478 (480)
5 KOG1538 Uncharacterized conser 100.0 1.2E-45 2.6E-50 379.0 38.9 670 9-801 8-715 (1081)
6 KOG0318 WD40 repeat stress pro 100.0 4.8E-43 1E-47 352.2 51.6 459 7-489 51-599 (603)
7 KOG0271 Notchless-like WD40 re 100.0 6.1E-44 1.3E-48 344.5 28.9 324 49-415 107-478 (480)
8 KOG0291 WD40-repeat-containing 100.0 1.1E-40 2.4E-45 348.7 53.9 458 15-490 96-707 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-43 7.1E-48 344.6 23.3 283 13-299 173-458 (459)
10 KOG0286 G-protein beta subunit 100.0 2.7E-41 5.8E-46 315.6 32.8 291 4-298 44-342 (343)
11 KOG0318 WD40 repeat stress pro 100.0 3.8E-38 8.1E-43 317.0 49.1 426 10-454 142-602 (603)
12 KOG0306 WD40-repeat-containing 100.0 7.7E-39 1.7E-43 334.8 43.8 435 15-490 65-661 (888)
13 KOG0291 WD40-repeat-containing 100.0 1.9E-35 4E-40 309.7 61.8 430 13-491 53-548 (893)
14 KOG0319 WD40-repeat-containing 100.0 2.4E-37 5.3E-42 323.8 47.5 463 13-490 60-574 (775)
15 KOG1524 WD40 repeat-containing 100.0 3.5E-37 7.7E-42 309.9 45.9 686 1-808 1-732 (737)
16 KOG0279 G protein beta subunit 100.0 1.5E-38 3.2E-43 295.7 31.6 294 1-298 1-310 (315)
17 KOG2041 WD40 repeat protein [G 100.0 6.2E-38 1.4E-42 324.8 39.1 704 14-825 13-832 (1189)
18 KOG0276 Vesicle coat complex C 100.0 7.1E-36 1.5E-40 306.1 52.0 625 51-753 7-709 (794)
19 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-39 5.6E-44 317.3 23.7 282 55-380 173-458 (459)
20 KOG0319 WD40-repeat-containing 100.0 5.5E-37 1.2E-41 321.2 41.8 473 6-490 95-616 (775)
21 KOG0292 Vesicle coat complex C 100.0 1.4E-35 3E-40 315.0 50.2 663 6-750 42-780 (1202)
22 KOG0273 Beta-transducin family 100.0 3.6E-37 7.8E-42 306.1 33.5 322 13-381 176-522 (524)
23 KOG0286 G-protein beta subunit 100.0 1.2E-36 2.6E-41 284.5 33.0 285 51-379 49-342 (343)
24 KOG0273 Beta-transducin family 100.0 6.3E-37 1.4E-41 304.4 30.9 277 16-297 236-519 (524)
25 KOG0295 WD40 repeat-containing 100.0 2.5E-37 5.4E-42 297.7 25.8 294 4-299 97-404 (406)
26 KOG0284 Polyadenylation factor 100.0 1.5E-37 3.3E-42 303.3 16.6 281 16-301 97-380 (464)
27 KOG0279 G protein beta subunit 100.0 7E-35 1.5E-39 271.3 32.6 297 49-382 7-313 (315)
28 KOG0285 Pleiotropic regulator 100.0 8.2E-36 1.8E-40 285.9 26.0 289 5-299 141-437 (460)
29 KOG0315 G-protein beta subunit 100.0 3.7E-34 8E-39 261.6 30.1 268 28-301 11-288 (311)
30 KOG0265 U5 snRNP-specific prot 100.0 2.7E-34 5.9E-39 270.1 29.1 286 7-297 39-334 (338)
31 KOG0263 Transcription initiati 100.0 8.4E-35 1.8E-39 308.8 27.0 242 15-260 378-650 (707)
32 KOG0645 WD40 repeat protein [G 100.0 1.4E-33 3E-38 261.4 31.2 287 4-299 3-309 (312)
33 cd00200 WD40 WD40 domain, foun 100.0 4E-33 8.7E-38 294.9 39.5 287 8-298 2-288 (289)
34 KOG0296 Angio-associated migra 100.0 1.6E-33 3.5E-38 271.8 32.5 328 8-381 57-397 (399)
35 KOG0306 WD40-repeat-containing 100.0 2.3E-32 5E-37 286.5 40.9 396 6-454 98-664 (888)
36 KOG0284 Polyadenylation factor 100.0 4.5E-35 9.7E-40 286.1 16.7 283 56-382 95-380 (464)
37 KOG0315 G-protein beta subunit 100.0 8.9E-33 1.9E-37 252.6 28.3 267 8-279 33-308 (311)
38 KOG0266 WD40 repeat-containing 100.0 7.5E-33 1.6E-37 306.0 33.3 287 9-299 152-452 (456)
39 KOG1538 Uncharacterized conser 100.0 5.9E-32 1.3E-36 278.6 36.3 687 5-779 43-815 (1081)
40 KOG0263 Transcription initiati 100.0 1.9E-33 4.2E-38 298.4 26.0 244 52-299 373-647 (707)
41 KOG0316 Conserved WD40 repeat- 100.0 1.3E-32 2.8E-37 249.4 26.3 283 8-297 10-296 (307)
42 KOG0293 WD40 repeat-containing 100.0 3E-33 6.6E-38 273.2 23.8 290 5-300 214-512 (519)
43 KOG0296 Angio-associated migra 100.0 1.8E-32 3.9E-37 264.6 28.5 289 7-298 98-395 (399)
44 KOG2106 Uncharacterized conser 100.0 1.3E-30 2.8E-35 261.3 41.0 433 7-490 96-623 (626)
45 KOG0285 Pleiotropic regulator 100.0 3.5E-32 7.5E-37 261.1 25.8 249 49-303 143-391 (460)
46 KOG0275 Conserved WD40 repeat- 100.0 2.9E-33 6.4E-38 264.5 16.6 283 13-299 211-507 (508)
47 KOG0645 WD40 repeat protein [G 100.0 9.1E-31 2E-35 242.8 32.7 291 49-381 6-310 (312)
48 KOG0265 U5 snRNP-specific prot 100.0 2E-31 4.4E-36 250.8 28.3 285 50-378 40-334 (338)
49 KOG0278 Serine/threonine kinas 100.0 5.8E-33 1.3E-37 253.7 17.3 290 7-303 6-299 (334)
50 PLN00181 protein SPA1-RELATED; 100.0 1.4E-30 3.1E-35 310.9 43.2 282 11-298 479-790 (793)
51 KOG0282 mRNA splicing factor [ 100.0 3.9E-33 8.5E-38 278.9 17.4 288 6-298 205-502 (503)
52 KOG0295 WD40 repeat-containing 100.0 3.6E-32 7.8E-37 262.2 22.5 288 49-379 100-403 (406)
53 KOG0281 Beta-TrCP (transducin 100.0 1.8E-33 4E-38 268.5 13.4 273 14-303 196-479 (499)
54 KOG2048 WD40 repeat protein [G 100.0 2.1E-28 4.5E-33 254.9 50.8 476 12-498 22-554 (691)
55 KOG0313 Microtubule binding pr 100.0 1.1E-30 2.4E-35 253.4 27.7 277 13-298 103-415 (423)
56 KOG0310 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 260.3 26.1 276 15-297 26-305 (487)
57 KOG1539 WD repeat protein [Gen 100.0 8.9E-28 1.9E-32 255.4 46.9 464 12-496 73-651 (910)
58 cd00200 WD40 WD40 domain, foun 100.0 2.9E-29 6.4E-34 265.2 36.0 285 51-379 3-288 (289)
59 KOG1408 WD40 repeat protein [F 100.0 3.7E-29 8E-34 260.2 34.3 440 9-494 72-715 (1080)
60 KOG0316 Conserved WD40 repeat- 100.0 1.1E-29 2.5E-34 230.3 25.8 245 49-301 9-257 (307)
61 KOG0643 Translation initiation 100.0 6.4E-30 1.4E-34 236.4 23.7 284 10-298 5-314 (327)
62 KOG0266 WD40 repeat-containing 100.0 3.1E-29 6.8E-34 277.2 33.0 282 56-380 158-452 (456)
63 KOG1407 WD40 repeat protein [F 100.0 3.2E-29 6.8E-34 231.2 26.7 279 8-293 13-294 (313)
64 PLN00181 protein SPA1-RELATED; 100.0 3.1E-28 6.7E-33 290.9 41.6 259 36-300 457-737 (793)
65 KOG1063 RNA polymerase II elon 100.0 1.3E-27 2.9E-32 249.0 39.9 478 4-490 43-696 (764)
66 KOG0288 WD40 repeat protein Ti 100.0 2.1E-30 4.6E-35 254.0 17.3 284 7-298 167-458 (459)
67 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-27 2.4E-32 228.5 34.6 290 4-301 3-303 (311)
68 KOG0305 Anaphase promoting com 100.0 9.9E-29 2.1E-33 259.3 28.3 273 20-299 182-459 (484)
69 KOG0277 Peroxisomal targeting 100.0 9.6E-29 2.1E-33 227.1 23.2 279 19-299 12-307 (311)
70 KOG2041 WD40 repeat protein [G 100.0 5.7E-28 1.2E-32 251.3 31.2 716 3-781 59-923 (1189)
71 KOG0643 Translation initiation 100.0 7.9E-28 1.7E-32 222.6 28.6 296 52-379 5-314 (327)
72 KOG0772 Uncharacterized conser 100.0 9.9E-29 2.1E-33 248.4 24.0 288 8-298 160-484 (641)
73 KOG0268 Sof1-like rRNA process 100.0 1.5E-29 3.2E-34 243.8 16.9 285 7-301 58-345 (433)
74 KOG0282 mRNA splicing factor [ 100.0 2.2E-29 4.7E-34 252.2 18.4 251 47-301 204-462 (503)
75 KOG2106 Uncharacterized conser 100.0 5.2E-25 1.1E-29 221.3 49.4 413 20-490 70-518 (626)
76 KOG3617 WD40 and TPR repeat-co 100.0 2.5E-27 5.5E-32 250.7 33.9 776 1-828 1-944 (1416)
77 KOG0299 U3 snoRNP-associated p 100.0 4.1E-28 8.9E-33 241.6 25.1 276 8-290 135-444 (479)
78 KOG0281 Beta-TrCP (transducin 100.0 3.3E-29 7.1E-34 239.5 15.3 228 56-299 196-426 (499)
79 KOG0293 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 241.2 19.3 253 4-260 258-514 (519)
80 KOG1407 WD40 repeat protein [F 100.0 2.8E-27 6.1E-32 218.4 25.4 276 51-373 14-292 (313)
81 KOG0973 Histone transcription 100.0 1.6E-27 3.4E-32 262.6 28.3 283 12-298 10-352 (942)
82 KOG1539 WD repeat protein [Gen 100.0 9.6E-26 2.1E-30 240.1 40.6 388 18-453 162-647 (910)
83 KOG0294 WD40 repeat-containing 100.0 5E-27 1.1E-31 222.7 25.7 246 6-261 34-283 (362)
84 KOG0289 mRNA splicing factor [ 100.0 5.4E-27 1.2E-31 231.4 26.3 279 16-297 220-502 (506)
85 KOG0275 Conserved WD40 repeat- 100.0 3.2E-28 6.8E-33 230.5 16.2 279 56-379 212-506 (508)
86 PTZ00421 coronin; Provisional 100.0 4.2E-26 9.1E-31 250.4 35.4 265 14-282 19-314 (493)
87 KOG0301 Phospholipase A2-activ 100.0 4.1E-27 8.9E-32 245.6 25.8 282 4-301 3-288 (745)
88 KOG0278 Serine/threonine kinas 100.0 1.1E-27 2.3E-32 219.4 18.5 285 51-382 8-297 (334)
89 KOG0640 mRNA cleavage stimulat 100.0 3.3E-27 7.1E-32 222.7 22.0 287 10-300 107-425 (430)
90 KOG2048 WD40 repeat protein [G 100.0 5.5E-24 1.2E-28 222.2 47.4 417 54-490 22-503 (691)
91 KOG1408 WD40 repeat protein [F 100.0 2.3E-25 5E-30 232.1 37.0 540 16-593 38-717 (1080)
92 KOG0277 Peroxisomal targeting 100.0 1.6E-27 3.5E-32 219.0 18.2 243 14-258 59-308 (311)
93 KOG0308 Conserved WD40 repeat- 100.0 1.3E-27 2.9E-32 247.3 19.7 276 20-298 29-324 (735)
94 KOG0647 mRNA export protein (c 100.0 2.4E-26 5.1E-31 216.9 26.4 270 13-290 25-312 (347)
95 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.1E-31 252.1 30.0 271 14-299 207-480 (537)
96 KOG0283 WD40 repeat-containing 100.0 3.1E-27 6.6E-32 254.0 22.0 289 9-304 260-579 (712)
97 KOG0310 Conserved WD40 repeat- 100.0 7.8E-27 1.7E-31 234.5 23.5 239 56-298 25-265 (487)
98 KOG1036 Mitotic spindle checkp 100.0 6.6E-26 1.4E-30 215.1 28.0 268 14-291 12-294 (323)
99 KOG0305 Anaphase promoting com 100.0 7.2E-27 1.6E-31 245.3 23.8 244 14-261 216-463 (484)
100 KOG1446 Histone H3 (Lys4) meth 100.0 8.6E-25 1.9E-29 208.9 34.3 247 48-300 5-261 (311)
101 KOG0300 WD40 repeat-containing 99.9 1.5E-26 3.3E-31 218.7 21.4 289 4-298 137-473 (481)
102 KOG0641 WD40 repeat protein [G 99.9 9E-25 1.9E-29 197.0 31.2 281 14-299 31-347 (350)
103 KOG0308 Conserved WD40 repeat- 99.9 8.3E-27 1.8E-31 241.4 19.8 229 67-297 35-281 (735)
104 PTZ00420 coronin; Provisional 99.9 8.2E-25 1.8E-29 240.6 36.5 245 33-283 50-318 (568)
105 KOG0274 Cdc4 and related F-box 99.9 1E-25 2.2E-30 247.1 27.6 248 7-267 241-490 (537)
106 PTZ00421 coronin; Provisional 99.9 4.5E-25 9.7E-30 242.3 32.5 227 10-240 70-314 (493)
107 KOG0973 Histone transcription 99.9 1.8E-25 3.9E-30 246.5 28.5 284 56-382 12-355 (942)
108 KOG1063 RNA polymerase II elon 99.9 7E-24 1.5E-28 221.5 38.3 426 20-490 19-599 (764)
109 KOG0313 Microtubule binding pr 99.9 1.1E-25 2.4E-30 218.8 22.8 249 4-258 133-417 (423)
110 KOG0299 U3 snoRNP-associated p 99.9 2.6E-25 5.7E-30 221.8 25.6 244 50-299 135-408 (479)
111 KOG1274 WD40 repeat protein [G 99.9 5.2E-22 1.1E-26 214.5 52.7 277 12-298 10-297 (933)
112 KOG0268 Sof1-like rRNA process 99.9 1.5E-26 3.3E-31 223.2 15.1 287 49-384 58-347 (433)
113 KOG0288 WD40 repeat protein Ti 99.9 1.9E-26 4.1E-31 226.4 15.8 285 49-379 167-458 (459)
114 KOG0772 Uncharacterized conser 99.9 5.3E-25 1.1E-29 221.8 24.7 238 51-291 161-429 (641)
115 PTZ00420 coronin; Provisional 99.9 1.2E-23 2.6E-28 231.4 36.9 223 75-300 50-292 (568)
116 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.8E-29 214.7 25.6 236 58-297 220-458 (506)
117 KOG0640 mRNA cleavage stimulat 99.9 4.6E-25 9.9E-30 208.3 21.0 289 50-381 105-425 (430)
118 KOG2055 WD40 repeat protein [G 99.9 1.4E-24 3E-29 216.4 25.3 279 15-299 213-510 (514)
119 KOG0647 mRNA export protein (c 99.9 3.6E-24 7.8E-29 202.2 26.4 270 55-372 25-312 (347)
120 KOG0264 Nucleosome remodeling 99.9 8.2E-25 1.8E-29 218.7 22.4 246 13-259 122-404 (422)
121 KOG0639 Transducin-like enhanc 99.9 1E-24 2.2E-29 218.7 20.5 277 13-297 417-700 (705)
122 KOG1332 Vesicle coat complex C 99.9 1.3E-24 2.8E-29 198.9 17.7 249 96-381 8-285 (299)
123 KOG0300 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 201.5 21.6 246 48-298 139-425 (481)
124 KOG0641 WD40 repeat protein [G 99.9 7.3E-23 1.6E-27 184.7 27.9 245 10-259 84-349 (350)
125 KOG1332 Vesicle coat complex C 99.9 2.3E-24 5E-29 197.2 18.1 252 8-259 4-286 (299)
126 KOG2096 WD40 repeat protein [G 99.9 4E-23 8.7E-28 196.1 26.9 283 8-296 79-398 (420)
127 KOG2096 WD40 repeat protein [G 99.9 4.5E-23 9.8E-28 195.8 26.2 288 94-415 81-399 (420)
128 KOG0283 WD40 repeat-containing 99.9 8.3E-24 1.8E-28 227.7 23.8 250 92-384 259-578 (712)
129 KOG0646 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 212.9 20.7 253 29-284 52-332 (476)
130 KOG0264 Nucleosome remodeling 99.9 1.2E-23 2.5E-28 210.5 22.6 244 55-299 122-402 (422)
131 KOG0650 WD40 repeat nucleolar 99.9 1.2E-23 2.6E-28 215.8 23.0 287 5-298 390-732 (733)
132 KOG0294 WD40 repeat-containing 99.9 2E-22 4.2E-27 191.7 28.0 263 30-302 4-282 (362)
133 KOG4283 Transcription-coupled 99.9 8.2E-23 1.8E-27 191.9 24.1 283 12-300 40-364 (397)
134 KOG4328 WD40 protein [Function 99.9 3.8E-23 8.1E-28 206.1 22.9 289 9-300 180-494 (498)
135 KOG1036 Mitotic spindle checkp 99.9 2.2E-22 4.7E-27 191.3 26.7 269 56-374 12-295 (323)
136 KOG0301 Phospholipase A2-activ 99.9 1.1E-22 2.4E-27 212.9 27.0 282 48-384 5-290 (745)
137 KOG1273 WD40 repeat protein [G 99.9 9.1E-23 2E-27 193.5 23.6 279 18-303 26-324 (405)
138 KOG0646 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 202.8 24.2 260 36-299 17-305 (476)
139 KOG0267 Microtubule severing p 99.9 1.3E-24 2.8E-29 227.9 9.6 259 27-295 4-262 (825)
140 KOG2055 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 199.7 25.1 286 56-381 212-511 (514)
141 KOG1445 Tumor-specific antigen 99.9 8.9E-22 1.9E-26 202.9 26.9 133 9-141 73-212 (1012)
142 KOG0639 Transducin-like enhanc 99.9 8.7E-23 1.9E-27 204.9 19.0 274 97-416 417-702 (705)
143 KOG1524 WD40 repeat-containing 99.9 2.6E-20 5.6E-25 188.9 36.0 616 56-779 13-691 (737)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 199.7 36.2 265 28-301 2-279 (300)
145 KOG0267 Microtubule severing p 99.9 8.2E-24 1.8E-28 221.9 9.5 238 9-250 22-259 (825)
146 KOG0269 WD40 repeat-containing 99.9 4.1E-23 8.8E-28 218.6 14.6 243 18-262 90-343 (839)
147 KOG0269 WD40 repeat-containing 99.9 1.6E-22 3.4E-27 214.2 19.0 277 16-297 40-336 (839)
148 KOG1273 WD40 repeat protein [G 99.9 5.3E-21 1.1E-25 181.6 24.6 235 60-298 26-277 (405)
149 KOG2445 Nuclear pore complex c 99.9 9.3E-21 2E-25 179.7 26.1 252 7-259 5-318 (361)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-20 7.2E-25 197.7 33.9 264 9-281 25-300 (300)
151 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.2E-25 204.6 29.3 265 97-404 11-285 (933)
152 KOG0270 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 195.0 18.7 245 18-264 176-454 (463)
153 KOG0270 WD40 repeat-containing 99.9 5.3E-21 1.2E-25 190.4 22.1 275 20-299 130-447 (463)
154 KOG4328 WD40 protein [Function 99.9 1.2E-20 2.7E-25 188.3 24.3 252 43-297 172-446 (498)
155 KOG2445 Nuclear pore complex c 99.9 3.4E-20 7.4E-25 175.9 26.0 245 54-299 10-316 (361)
156 KOG0302 Ribosome Assembly prot 99.9 9.6E-21 2.1E-25 184.3 21.7 245 9-256 145-435 (440)
157 KOG0302 Ribosome Assembly prot 99.9 6.1E-21 1.3E-25 185.7 20.0 241 55-297 149-435 (440)
158 KOG2919 Guanine nucleotide-bin 99.9 1.9E-20 4.1E-25 178.6 22.8 272 18-292 52-361 (406)
159 KOG4378 Nuclear protein COP1 [ 99.9 7.2E-21 1.6E-25 191.1 20.4 262 17-283 36-305 (673)
160 KOG0650 WD40 repeat nucleolar 99.9 2.6E-20 5.7E-25 191.6 24.3 243 50-298 393-677 (733)
161 KOG1963 WD40 repeat protein [G 99.9 4.7E-18 1E-22 184.2 41.8 407 11-456 12-540 (792)
162 KOG1034 Transcriptional repres 99.9 3.2E-20 6.8E-25 177.7 22.1 282 10-298 33-380 (385)
163 KOG0307 Vesicle coat complex C 99.9 7.3E-22 1.6E-26 219.1 12.6 280 17-298 8-324 (1049)
164 KOG0321 WD40 repeat-containing 99.9 4.2E-20 9.1E-25 191.7 23.0 277 20-300 54-390 (720)
165 KOG1009 Chromatin assembly com 99.9 5.6E-19 1.2E-23 174.2 27.5 317 142-488 13-367 (434)
166 KOG4378 Nuclear protein COP1 [ 99.8 5.2E-20 1.1E-24 185.0 20.4 264 32-300 7-279 (673)
167 COG2319 FOG: WD40 repeat [Gene 99.8 7.7E-17 1.7E-21 181.6 47.3 285 10-299 60-357 (466)
168 KOG3617 WD40 and TPR repeat-co 99.8 6.2E-19 1.3E-23 187.7 27.4 111 665-783 909-1022(1416)
169 KOG4497 Uncharacterized conser 99.8 2E-19 4.4E-24 171.9 21.0 384 20-489 13-428 (447)
170 KOG0642 Cell-cycle nuclear pro 99.8 1.9E-20 4.1E-25 192.1 15.0 264 5-270 284-572 (577)
171 KOG1963 WD40 repeat protein [G 99.8 2.3E-17 5.1E-22 178.8 39.3 417 6-461 48-590 (792)
172 KOG0307 Vesicle coat complex C 99.8 1.1E-20 2.3E-25 210.0 13.3 246 15-262 64-330 (1049)
173 KOG1188 WD40 repeat protein [G 99.8 2.4E-19 5.1E-24 172.9 20.3 271 28-300 41-345 (376)
174 KOG1009 Chromatin assembly com 99.8 5.8E-19 1.3E-23 174.0 22.8 279 14-297 12-368 (434)
175 KOG4283 Transcription-coupled 99.8 9.1E-19 2E-23 164.9 22.1 241 12-258 98-364 (397)
176 KOG1034 Transcriptional repres 99.8 2.6E-19 5.6E-24 171.5 18.5 243 13-258 87-382 (385)
177 KOG1007 WD repeat protein TSSC 99.8 8E-19 1.7E-23 165.0 20.1 250 7-259 55-361 (370)
178 KOG1007 WD repeat protein TSSC 99.8 1.2E-18 2.6E-23 163.8 20.9 268 27-297 26-357 (370)
179 KOG0644 Uncharacterized conser 99.8 4.2E-20 9.1E-25 196.8 10.1 281 4-298 179-465 (1113)
180 KOG4227 WD40 repeat protein [G 99.8 7.4E-18 1.6E-22 164.6 23.6 293 8-304 49-390 (609)
181 KOG1517 Guanine nucleotide bin 99.8 7.4E-18 1.6E-22 184.4 25.8 286 11-299 1060-1379(1387)
182 KOG0321 WD40 repeat-containing 99.8 2.8E-18 6E-23 178.3 20.7 251 9-262 94-394 (720)
183 KOG1587 Cytoplasmic dynein int 99.8 1.5E-17 3.3E-22 181.0 26.5 260 37-298 222-513 (555)
184 KOG1445 Tumor-specific antigen 99.8 4.4E-18 9.6E-23 175.9 20.0 148 144-292 629-785 (1012)
185 KOG0322 G-protein beta subunit 99.8 1.4E-18 2.9E-23 161.5 14.3 286 6-299 5-321 (323)
186 KOG0649 WD40 repeat protein [G 99.8 7.9E-17 1.7E-21 147.9 24.9 268 16-297 11-312 (325)
187 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 158.1 21.7 233 15-250 104-361 (406)
188 KOG0290 Conserved WD40 repeat- 99.8 9.5E-17 2.1E-21 151.4 24.1 273 17-293 46-358 (364)
189 PF04762 IKI3: IKI3 family; I 99.8 1.8E-12 4E-17 153.0 66.1 545 16-607 22-713 (928)
190 KOG0642 Cell-cycle nuclear pro 99.8 4.7E-18 1E-22 174.7 15.9 245 52-299 289-559 (577)
191 KOG3616 Selective LIM binding 99.8 1.2E-16 2.6E-21 168.4 25.8 216 529-794 382-617 (1636)
192 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-15 3.3E-20 171.0 37.2 290 6-301 146-442 (466)
193 KOG1920 IkappaB kinase complex 99.8 2.2E-14 4.9E-19 160.9 43.9 276 14-297 17-361 (1265)
194 KOG4497 Uncharacterized conser 99.8 1.7E-16 3.7E-21 152.0 22.4 308 15-378 48-427 (447)
195 KOG0649 WD40 repeat protein [G 99.7 7.2E-16 1.6E-20 141.7 24.5 227 59-297 12-270 (325)
196 KOG1523 Actin-related protein 99.7 1.9E-16 4.1E-21 151.7 20.7 243 52-297 5-275 (361)
197 KOG1188 WD40 repeat protein [G 99.7 1.3E-16 2.9E-21 154.1 19.5 197 70-268 41-251 (376)
198 KOG1334 WD40 repeat protein [G 99.7 2.1E-17 4.5E-22 166.6 14.6 296 4-301 131-466 (559)
199 KOG1912 WD40 repeat protein [G 99.7 3.1E-14 6.7E-19 151.5 38.3 367 3-398 43-572 (1062)
200 KOG1587 Cytoplasmic dynein int 99.7 1.9E-16 4.1E-21 172.5 22.6 243 15-259 242-516 (555)
201 KOG0303 Actin-binding protein 99.7 3.1E-16 6.7E-21 154.1 20.7 226 10-240 76-320 (472)
202 KOG0303 Actin-binding protein 99.7 1.2E-15 2.7E-20 149.9 22.0 203 93-299 75-292 (472)
203 KOG0290 Conserved WD40 repeat- 99.7 7.5E-16 1.6E-20 145.4 19.5 239 12-255 93-361 (364)
204 KOG1272 WD40-repeat-containing 99.7 3.1E-17 6.8E-22 164.4 10.9 271 16-297 130-405 (545)
205 KOG4227 WD40 repeat protein [G 99.7 2.3E-15 4.9E-20 147.4 23.2 245 51-299 50-320 (609)
206 KOG2110 Uncharacterized conser 99.7 2.5E-14 5.3E-19 140.2 29.9 233 58-299 6-246 (391)
207 KOG1523 Actin-related protein 99.7 1.1E-15 2.4E-20 146.6 19.5 234 13-250 8-269 (361)
208 PRK11028 6-phosphogluconolacto 99.7 2.5E-14 5.3E-19 153.8 31.0 259 33-298 8-301 (330)
209 KOG1310 WD40 repeat protein [G 99.7 4.2E-16 9.1E-21 159.1 16.0 244 4-266 39-310 (758)
210 PRK01742 tolB translocation pr 99.7 2.9E-15 6.2E-20 165.9 24.1 235 36-282 183-426 (429)
211 KOG2139 WD40 repeat protein [G 99.7 2E-14 4.2E-19 140.1 25.9 253 16-294 99-368 (445)
212 KOG2110 Uncharacterized conser 99.7 1.7E-13 3.6E-18 134.5 31.2 236 14-260 4-249 (391)
213 KOG1517 Guanine nucleotide bin 99.7 6.6E-15 1.4E-19 161.7 23.7 287 59-382 1066-1381(1387)
214 KOG2111 Uncharacterized conser 99.7 1.5E-13 3.2E-18 132.2 30.0 235 59-302 7-257 (346)
215 KOG2111 Uncharacterized conser 99.7 2.4E-13 5.2E-18 130.8 30.3 237 16-260 6-257 (346)
216 PRK11028 6-phosphogluconolacto 99.7 1.8E-13 4E-18 147.0 33.3 266 74-382 7-304 (330)
217 PF02239 Cytochrom_D1: Cytochr 99.6 3.9E-13 8.4E-18 143.4 32.4 288 8-298 29-344 (369)
218 PRK01742 tolB translocation pr 99.6 9.7E-15 2.1E-19 161.6 20.5 222 8-240 196-426 (429)
219 KOG0644 Uncharacterized conser 99.6 4.7E-16 1E-20 166.3 9.2 236 49-299 182-424 (1113)
220 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-12 2.4E-17 139.9 32.9 255 28-289 6-286 (369)
221 KOG0322 G-protein beta subunit 99.6 1.1E-14 2.5E-19 135.7 15.1 286 50-381 7-322 (323)
222 KOG1272 WD40-repeat-containing 99.6 1.5E-15 3.2E-20 152.5 9.5 230 58-298 130-359 (545)
223 KOG2139 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 134.4 22.5 190 100-294 99-303 (445)
224 KOG1240 Protein kinase contain 99.6 1.5E-13 3.3E-18 153.8 25.7 256 4-260 1037-1335(1431)
225 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.7E-19 145.1 14.9 194 61-259 148-354 (398)
226 KOG1354 Serine/threonine prote 99.6 1.5E-13 3.3E-18 133.0 21.6 245 14-262 24-362 (433)
227 KOG1240 Protein kinase contain 99.6 3.3E-13 7.2E-18 151.1 26.7 262 42-306 1034-1339(1431)
228 KOG0771 Prolactin regulatory e 99.6 1.4E-14 2.9E-19 144.9 14.1 195 19-217 148-354 (398)
229 KOG3881 Uncharacterized conser 99.6 2.1E-13 4.5E-18 134.8 21.6 260 13-282 53-342 (412)
230 KOG2321 WD40 repeat protein [G 99.6 3.8E-13 8.3E-18 138.8 24.2 281 7-297 44-339 (703)
231 KOG1310 WD40 repeat protein [G 99.6 1.9E-14 4.2E-19 147.2 14.4 168 49-217 42-231 (758)
232 PRK03629 tolB translocation pr 99.6 1.1E-12 2.3E-17 144.9 29.4 235 37-282 179-428 (429)
233 KOG1334 WD40 repeat protein [G 99.6 2.3E-14 5E-19 145.0 12.6 254 49-303 134-426 (559)
234 COG5354 Uncharacterized protei 99.6 3.1E-12 6.8E-17 130.7 27.8 271 11-292 28-336 (561)
235 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 147.1 25.0 235 37-282 176-425 (427)
236 PRK04922 tolB translocation pr 99.6 1.5E-12 3.4E-17 144.5 28.0 234 37-281 184-432 (433)
237 KOG1912 WD40 repeat protein [G 99.6 1.8E-12 4E-17 138.3 26.6 443 15-472 15-572 (1062)
238 KOG2315 Predicted translation 99.5 5E-12 1.1E-16 131.0 28.0 271 15-297 34-380 (566)
239 PRK03629 tolB translocation pr 99.5 1.2E-12 2.5E-17 144.6 25.0 222 9-240 192-428 (429)
240 PRK05137 tolB translocation pr 99.5 4.3E-12 9.3E-17 141.2 29.6 234 37-282 182-433 (435)
241 PF04762 IKI3: IKI3 family; I 99.5 1.3E-08 2.8E-13 120.9 59.3 234 58-299 22-331 (928)
242 KOG2315 Predicted translation 99.5 4E-11 8.7E-16 124.4 32.7 319 36-408 10-373 (566)
243 KOG2314 Translation initiation 99.5 8.6E-12 1.9E-16 128.5 27.2 336 18-404 213-597 (698)
244 COG5354 Uncharacterized protei 99.5 5.2E-11 1.1E-15 121.9 31.2 243 40-290 15-293 (561)
245 PRK02889 tolB translocation pr 99.5 1.6E-12 3.4E-17 143.8 22.1 222 9-240 189-425 (427)
246 KOG3881 Uncharacterized conser 99.5 2.3E-12 4.9E-17 127.5 19.4 220 14-240 104-342 (412)
247 KOG2394 WD40 protein DMR-N9 [G 99.5 1.4E-12 3E-17 133.8 18.5 246 17-281 125-384 (636)
248 PRK04922 tolB translocation pr 99.5 2.7E-12 5.8E-17 142.6 22.6 222 8-239 196-432 (433)
249 PRK05137 tolB translocation pr 99.5 7.4E-12 1.6E-16 139.3 25.5 222 8-240 194-433 (435)
250 KOG2394 WD40 protein DMR-N9 [G 99.5 6.7E-13 1.4E-17 136.1 15.4 137 15-152 219-384 (636)
251 KOG1409 Uncharacterized conser 99.5 2.9E-12 6.3E-17 124.5 18.6 212 4-218 13-271 (404)
252 COG4946 Uncharacterized protei 99.5 3.4E-09 7.4E-14 107.6 39.7 181 108-296 275-468 (668)
253 KOG2321 WD40 repeat protein [G 99.4 2.9E-11 6.4E-16 125.2 24.7 235 56-299 50-300 (703)
254 PF08662 eIF2A: Eukaryotic tra 99.4 2.4E-11 5.3E-16 117.5 21.1 149 19-174 9-180 (194)
255 KOG2314 Translation initiation 99.4 1.4E-10 2.9E-15 119.8 27.0 306 60-408 213-556 (698)
256 KOG0974 WD-repeat protein WDR6 99.4 3.6E-10 7.7E-15 125.9 31.5 197 16-218 88-289 (967)
257 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.2E-15 129.3 28.9 232 37-279 170-416 (417)
258 PF08662 eIF2A: Eukaryotic tra 99.4 4E-11 8.7E-16 116.0 21.0 156 103-267 9-186 (194)
259 PRK00178 tolB translocation pr 99.4 1.9E-10 4.1E-15 128.5 29.1 234 38-282 180-428 (430)
260 KOG1354 Serine/threonine prote 99.4 8.1E-11 1.8E-15 114.4 22.2 239 57-299 25-357 (433)
261 PRK04792 tolB translocation pr 99.4 2.5E-10 5.5E-15 126.6 27.6 234 38-282 199-447 (448)
262 PRK01029 tolB translocation pr 99.3 1E-09 2.2E-14 120.7 29.6 240 37-283 165-426 (428)
263 KOG4547 WD40 repeat-containing 99.3 3.9E-10 8.5E-15 118.3 24.1 189 24-217 2-220 (541)
264 KOG1920 IkappaB kinase complex 99.3 8.8E-08 1.9E-12 109.0 44.0 194 99-299 68-320 (1265)
265 PRK00178 tolB translocation pr 99.3 3.2E-10 6.8E-15 126.7 25.3 222 9-240 192-428 (430)
266 TIGR02800 propeller_TolB tol-p 99.3 2.8E-10 6E-15 127.1 24.8 219 9-237 183-416 (417)
267 PRK01029 tolB translocation pr 99.3 5.1E-10 1.1E-14 123.1 26.1 227 9-241 178-426 (428)
268 PF10282 Lactonase: Lactonase, 99.3 1.8E-08 3.9E-13 108.2 37.4 266 30-297 2-318 (345)
269 PF10282 Lactonase: Lactonase, 99.3 1.2E-08 2.7E-13 109.5 35.7 262 15-279 36-345 (345)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.2E-08 6.9E-13 103.0 35.4 261 26-297 11-326 (352)
271 KOG0974 WD-repeat protein WDR6 99.3 1.5E-10 3.3E-15 128.8 19.3 268 16-300 8-287 (967)
272 PRK04792 tolB translocation pr 99.3 5.4E-10 1.2E-14 124.0 23.9 222 10-240 212-447 (448)
273 KOG0280 Uncharacterized conser 99.3 6.9E-10 1.5E-14 106.0 20.5 250 36-288 45-318 (339)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.9E-08 4.2E-13 104.6 32.4 240 23-267 53-338 (352)
275 KOG2114 Vacuolar assembly/sort 99.2 1.9E-08 4.1E-13 110.2 32.6 464 193-781 31-535 (933)
276 KOG0280 Uncharacterized conser 99.2 1E-09 2.2E-14 104.9 19.8 240 16-257 70-331 (339)
277 TIGR03300 assembly_YfgL outer 99.2 1.2E-08 2.5E-13 112.0 31.1 253 27-298 65-335 (377)
278 KOG1064 RAVE (regulator of V-A 99.2 4.2E-11 9.1E-16 139.1 11.8 200 11-226 2204-2407(2439)
279 KOG4547 WD40 repeat-containing 99.2 2.4E-09 5.2E-14 112.5 23.5 187 67-259 3-220 (541)
280 KOG3616 Selective LIM binding 99.2 1.6E-09 3.6E-14 115.4 21.8 138 645-782 563-720 (1636)
281 TIGR03300 assembly_YfgL outer 99.2 1.3E-08 2.8E-13 111.7 29.3 256 26-297 104-375 (377)
282 KOG1409 Uncharacterized conser 99.1 4.6E-09 9.9E-14 102.6 19.8 247 49-301 16-270 (404)
283 COG4946 Uncharacterized protei 99.1 2.6E-07 5.6E-12 94.2 32.2 215 23-248 274-507 (668)
284 KOG1064 RAVE (regulator of V-A 99.1 4.8E-10 1E-14 130.6 13.3 196 56-268 2207-2407(2439)
285 PLN02919 haloacid dehalogenase 99.1 1.2E-07 2.6E-12 115.1 33.7 238 19-263 571-892 (1057)
286 KOG4532 WD40-like repeat conta 99.1 3.6E-08 7.7E-13 93.1 21.2 238 20-259 72-331 (344)
287 COG5170 CDC55 Serine/threonine 99.1 6.8E-09 1.5E-13 99.8 16.1 240 14-257 25-365 (460)
288 COG5170 CDC55 Serine/threonine 99.1 1.6E-08 3.4E-13 97.3 18.5 238 57-298 26-364 (460)
289 COG2706 3-carboxymuconate cycl 99.0 1.7E-06 3.7E-11 86.4 33.1 210 36-248 15-262 (346)
290 PF15492 Nbas_N: Neuroblastoma 99.0 5.7E-07 1.2E-11 87.0 27.7 236 20-269 2-269 (282)
291 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.3E-06 5E-11 80.9 30.6 189 27-226 23-215 (354)
292 PRK04043 tolB translocation pr 99.0 1E-07 2.2E-12 104.1 25.1 199 16-226 188-408 (419)
293 PRK04043 tolB translocation pr 99.0 4.2E-07 9.1E-12 99.3 29.5 210 37-259 169-400 (419)
294 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.8E-14 111.3 10.0 278 9-297 729-1032(1034)
295 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.5E-14 110.1 10.9 241 50-297 728-984 (1034)
296 COG2706 3-carboxymuconate cycl 99.0 3E-06 6.5E-11 84.7 31.5 250 12-265 36-329 (346)
297 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.8E-13 102.1 14.7 162 17-182 64-232 (390)
298 PLN02919 haloacid dehalogenase 98.9 9.2E-07 2E-11 107.6 33.1 235 61-300 571-887 (1057)
299 KOG0309 Conserved WD40 repeat- 98.9 7.8E-09 1.7E-13 110.5 13.3 282 15-299 24-337 (1081)
300 KOG1832 HIV-1 Vpr-binding prot 98.9 7.2E-10 1.6E-14 120.3 4.8 266 4-290 1090-1378(1516)
301 PF08450 SGL: SMP-30/Gluconola 98.9 3.1E-06 6.8E-11 86.5 31.4 218 62-290 4-244 (246)
302 PF13360 PQQ_2: PQQ-like domai 98.9 5.5E-07 1.2E-11 91.9 25.8 221 36-266 2-237 (238)
303 KOG4714 Nucleoporin [Nuclear s 98.9 8.1E-09 1.8E-13 97.0 10.7 161 14-174 88-255 (319)
304 KOG4532 WD40-like repeat conta 98.9 2.8E-07 6E-12 87.3 20.6 225 35-270 50-293 (344)
305 KOG0309 Conserved WD40 repeat- 98.9 9.9E-09 2.2E-13 109.7 12.4 243 18-260 70-340 (1081)
306 PRK11138 outer membrane biogen 98.9 1.6E-06 3.4E-11 95.5 30.5 259 26-297 68-349 (394)
307 PF04053 Coatomer_WDAD: Coatom 98.9 1.7E-05 3.7E-10 86.3 35.8 185 228-488 31-219 (443)
308 PF08450 SGL: SMP-30/Gluconola 98.9 6E-06 1.3E-10 84.4 31.0 217 20-248 4-244 (246)
309 PRK11138 outer membrane biogen 98.8 1.7E-06 3.7E-11 95.2 27.9 258 27-297 120-390 (394)
310 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.2E-05 4.7E-10 74.5 30.1 187 111-317 23-213 (354)
311 PF07433 DUF1513: Protein of u 98.8 8.8E-06 1.9E-10 81.7 27.9 232 16-255 5-281 (305)
312 KOG4714 Nucleoporin [Nuclear s 98.8 1.1E-07 2.5E-12 89.5 13.2 197 18-218 39-255 (319)
313 KOG3914 WD repeat protein WDR4 98.8 1.1E-07 2.4E-12 95.5 13.8 160 60-226 65-232 (390)
314 KOG1832 HIV-1 Vpr-binding prot 98.8 4.4E-09 9.6E-14 114.4 3.9 220 48-287 1092-1317(1516)
315 PF07433 DUF1513: Protein of u 98.7 2.1E-05 4.6E-10 79.0 28.8 227 59-295 6-279 (305)
316 KOG0882 Cyclophilin-related pe 98.7 1.7E-07 3.6E-12 95.1 13.8 250 14-269 8-315 (558)
317 KOG1275 PAB-dependent poly(A) 98.7 1.3E-06 2.8E-11 96.5 19.0 182 68-257 146-340 (1118)
318 KOG3621 WD40 repeat-containing 98.7 5.7E-06 1.2E-10 89.5 23.5 204 14-224 32-252 (726)
319 PF13360 PQQ_2: PQQ-like domai 98.6 2.3E-05 5E-10 79.9 27.0 211 77-298 1-227 (238)
320 KOG1275 PAB-dependent poly(A) 98.6 8E-07 1.7E-11 98.1 16.1 182 27-216 147-341 (1118)
321 KOG2066 Vacuolar assembly/sort 98.6 1.2E-06 2.5E-11 95.9 17.1 182 15-217 39-233 (846)
322 PF15492 Nbas_N: Neuroblastoma 98.6 1.5E-05 3.2E-10 77.5 22.3 196 18-227 46-269 (282)
323 PF00930 DPPIV_N: Dipeptidyl p 98.6 3.6E-05 7.9E-10 83.1 28.5 263 24-291 1-347 (353)
324 KOG2114 Vacuolar assembly/sort 98.6 7.6E-06 1.6E-10 90.3 21.8 204 21-229 29-256 (933)
325 KOG2695 WD40 repeat protein [G 98.6 2.4E-07 5.2E-12 90.9 9.2 161 64-228 218-387 (425)
326 KOG2695 WD40 repeat protein [G 98.5 2.5E-07 5.5E-12 90.7 8.6 151 115-271 228-388 (425)
327 cd00216 PQQ_DH Dehydrogenases 98.5 0.0001 2.2E-09 83.1 29.2 262 27-297 61-420 (488)
328 KOG1645 RING-finger-containing 98.5 7.2E-06 1.6E-10 82.6 16.6 250 4-259 182-461 (463)
329 PF14583 Pectate_lyase22: Olig 98.4 0.0011 2.5E-08 69.0 32.3 245 43-292 16-303 (386)
330 cd00216 PQQ_DH Dehydrogenases 98.4 0.0002 4.4E-09 80.8 28.4 234 28-270 111-435 (488)
331 KOG0882 Cyclophilin-related pe 98.4 5.9E-06 1.3E-10 84.2 14.1 209 56-268 8-240 (558)
332 KOG1645 RING-finger-containing 98.4 6.1E-05 1.3E-09 76.1 21.0 253 39-297 175-457 (463)
333 PF06433 Me-amine-dh_H: Methyl 98.4 0.00052 1.1E-08 70.0 27.7 247 19-270 39-331 (342)
334 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4.1E-11 58.8 6.6 39 47-85 1-39 (39)
335 PF00400 WD40: WD domain, G-be 98.3 1.9E-06 4E-11 58.8 6.4 39 89-127 1-39 (39)
336 COG5290 IkappaB kinase complex 98.3 0.0018 3.9E-08 71.2 31.3 137 640-776 822-988 (1243)
337 PF14583 Pectate_lyase22: Olig 98.3 0.0017 3.7E-08 67.7 28.9 272 22-297 42-377 (386)
338 KOG1008 Uncharacterized conser 98.2 2.6E-07 5.6E-12 98.1 0.8 200 14-217 55-275 (783)
339 PF08596 Lgl_C: Lethal giant l 98.2 0.00058 1.3E-08 73.5 25.3 265 17-290 3-325 (395)
340 PF06977 SdiA-regulated: SdiA- 98.2 0.00077 1.7E-08 67.1 24.3 201 9-214 15-247 (248)
341 KOG2066 Vacuolar assembly/sort 98.2 0.00011 2.5E-09 80.8 19.0 155 11-173 54-233 (846)
342 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0024 5.3E-08 69.8 29.8 224 20-257 33-285 (410)
343 PF11768 DUF3312: Protein of u 98.2 0.016 3.5E-07 62.8 34.3 44 646-689 501-544 (545)
344 PRK02888 nitrous-oxide reducta 98.1 0.00067 1.4E-08 75.0 24.1 217 26-260 140-405 (635)
345 PF02897 Peptidase_S9_N: Proly 98.1 0.0075 1.6E-07 67.1 33.0 243 17-264 125-409 (414)
346 COG0823 TolB Periplasmic compo 98.1 0.00019 4.1E-09 78.1 18.5 183 11-199 188-383 (425)
347 PF08596 Lgl_C: Lethal giant l 98.1 0.0025 5.5E-08 68.7 26.9 229 59-298 3-287 (395)
348 PF06433 Me-amine-dh_H: Methyl 98.1 0.02 4.3E-07 58.8 31.8 253 37-299 17-318 (342)
349 KOG3621 WD40 repeat-containing 98.0 0.00055 1.2E-08 74.6 20.3 139 98-239 32-180 (726)
350 COG0823 TolB Periplasmic compo 98.0 0.00048 1E-08 74.9 20.0 203 37-248 173-388 (425)
351 PF11768 DUF3312: Protein of u 98.0 0.00017 3.6E-09 77.5 15.6 118 18-137 208-337 (545)
352 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0013 2.8E-08 71.0 22.9 230 15-248 42-346 (353)
353 PF06977 SdiA-regulated: SdiA- 98.0 0.0051 1.1E-07 61.4 24.8 199 53-256 17-247 (248)
354 PF04841 Vps16_N: Vps16, N-ter 98.0 0.01 2.2E-07 65.0 29.6 191 80-283 62-271 (410)
355 KOG1008 Uncharacterized conser 97.9 3.4E-06 7.4E-11 89.8 1.7 196 99-298 56-272 (783)
356 PRK02888 nitrous-oxide reducta 97.9 0.0019 4.1E-08 71.5 22.2 216 21-248 198-450 (635)
357 PF00780 CNH: CNH domain; Int 97.9 0.013 2.9E-07 61.0 28.0 227 25-270 5-266 (275)
358 COG3391 Uncharacterized conser 97.9 0.019 4.1E-07 62.5 29.4 261 17-282 32-309 (381)
359 PF03178 CPSF_A: CPSF A subuni 97.9 0.0059 1.3E-07 65.2 25.0 212 79-297 2-261 (321)
360 COG3391 Uncharacterized conser 97.8 0.054 1.2E-06 59.0 31.3 252 39-297 13-279 (381)
361 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.092 2E-06 59.7 33.4 191 69-266 69-340 (527)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.02 4.3E-07 65.0 28.0 237 28-270 121-501 (527)
363 PF00780 CNH: CNH domain; Int 97.7 0.05 1.1E-06 56.6 29.0 137 154-299 6-164 (275)
364 KOG1897 Damage-specific DNA bi 97.7 0.17 3.8E-06 58.2 50.6 455 16-492 354-898 (1096)
365 PF03178 CPSF_A: CPSF A subuni 97.7 0.035 7.6E-07 59.2 27.5 211 37-256 2-262 (321)
366 KOG4640 Anaphase-promoting com 97.7 0.0002 4.4E-09 76.9 9.6 94 14-108 19-114 (665)
367 KOG2280 Vacuolar assembly/sort 97.6 0.2 4.4E-06 56.0 32.2 121 648-779 446-577 (829)
368 KOG4640 Anaphase-promoting com 97.6 0.00032 6.9E-09 75.5 9.8 95 57-152 20-115 (665)
369 COG3386 Gluconolactonase [Carb 97.5 0.051 1.1E-06 56.4 24.7 218 21-248 30-274 (307)
370 PF14870 PSII_BNR: Photosynthe 97.5 0.18 3.9E-06 52.1 32.4 270 99-415 16-301 (302)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.057 1.2E-06 58.1 24.8 89 20-109 6-118 (415)
372 PF08553 VID27: VID27 cytoplas 97.5 0.0099 2.1E-07 68.6 20.2 142 154-298 492-645 (794)
373 PF02897 Peptidase_S9_N: Proly 97.4 0.18 3.9E-06 56.1 30.2 220 61-286 127-385 (414)
374 PRK13616 lipoprotein LpqB; Pro 97.4 0.014 3.1E-07 66.6 20.0 184 16-213 350-564 (591)
375 PF14870 PSII_BNR: Photosynthe 97.3 0.3 6.5E-06 50.4 30.9 230 56-297 15-257 (302)
376 COG3204 Uncharacterized protei 97.3 0.056 1.2E-06 53.6 20.0 165 11-175 81-265 (316)
377 COG3490 Uncharacterized protei 97.2 0.23 5.1E-06 48.8 23.4 242 46-298 57-345 (366)
378 KOG1897 Damage-specific DNA bi 97.2 0.73 1.6E-05 53.4 42.8 401 58-492 488-942 (1096)
379 PF05694 SBP56: 56kDa selenium 97.2 0.36 7.7E-06 51.3 26.0 213 47-261 52-344 (461)
380 PRK10115 protease 2; Provision 97.2 0.89 1.9E-05 53.7 34.7 237 17-262 128-397 (686)
381 KOG2395 Protein involved in va 97.1 0.038 8.3E-07 58.8 18.6 141 154-297 344-497 (644)
382 KOG2079 Vacuolar assembly/sort 97.1 0.0094 2E-07 68.6 15.2 110 59-172 89-202 (1206)
383 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.055 1.2E-06 45.6 15.8 100 18-124 2-109 (111)
384 COG3490 Uncharacterized protei 97.1 0.2 4.3E-06 49.3 21.5 241 146-416 71-346 (366)
385 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.063 1.4E-06 45.2 15.9 102 188-297 2-110 (111)
386 PHA02713 hypothetical protein; 97.1 0.042 9.2E-07 63.0 20.5 216 38-262 273-536 (557)
387 PRK13616 lipoprotein LpqB; Pro 97.1 0.047 1E-06 62.4 20.6 184 58-255 350-564 (591)
388 KOG2444 WD40 repeat protein [G 97.1 0.00067 1.5E-08 64.0 4.7 141 114-259 33-177 (238)
389 KOG4499 Ca2+-binding protein R 97.1 0.18 3.9E-06 48.1 20.3 214 27-246 27-271 (310)
390 PF05096 Glu_cyclase_2: Glutam 97.1 0.27 5.8E-06 49.0 22.7 181 18-206 47-250 (264)
391 COG3204 Uncharacterized protei 97.0 0.13 2.8E-06 51.1 20.0 169 54-225 82-270 (316)
392 KOG2079 Vacuolar assembly/sort 97.0 0.0049 1.1E-07 70.7 11.7 100 26-128 98-202 (1206)
393 PRK13684 Ycf48-like protein; P 97.0 0.71 1.5E-05 49.2 29.1 226 57-297 45-284 (334)
394 PF08553 VID27: VID27 cytoplas 96.9 0.022 4.7E-07 65.9 15.8 136 118-258 501-646 (794)
395 COG3386 Gluconolactonase [Carb 96.9 0.25 5.4E-06 51.4 22.2 220 63-290 30-274 (307)
396 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.92 2E-05 49.2 34.2 270 27-306 37-366 (418)
397 smart00320 WD40 WD40 repeats. 96.9 0.0032 7E-08 41.8 5.7 39 89-127 2-40 (40)
398 smart00320 WD40 WD40 repeats. 96.8 0.0034 7.4E-08 41.7 5.7 38 48-85 3-40 (40)
399 PF15390 DUF4613: Domain of un 96.8 0.49 1.1E-05 51.7 23.9 153 13-173 17-186 (671)
400 KOG2247 WD40 repeat-containing 96.8 0.00033 7.2E-09 72.9 0.3 127 668-823 3-129 (615)
401 PF15390 DUF4613: Domain of un 96.7 1.2 2.7E-05 48.7 26.9 150 58-217 20-186 (671)
402 KOG4441 Proteins containing BT 96.7 0.12 2.5E-06 59.3 20.1 230 24-261 282-548 (571)
403 COG3292 Predicted periplasmic 96.7 0.15 3.3E-06 55.1 19.1 272 15-297 164-443 (671)
404 TIGR03074 PQQ_membr_DH membran 96.7 0.55 1.2E-05 55.4 25.6 230 27-268 194-486 (764)
405 PF13429 TPR_15: Tetratricopep 96.7 0.0027 5.9E-08 66.3 6.3 102 647-748 118-239 (280)
406 KOG0985 Vesicle coat protein c 96.6 0.031 6.7E-07 63.9 13.9 113 651-763 1087-1247(1666)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.57 1.2E-05 50.6 22.6 85 141-226 306-407 (415)
408 PF05694 SBP56: 56kDa selenium 96.5 1 2.2E-05 48.0 23.1 211 154-384 86-344 (461)
409 KOG2444 WD40 repeat protein [G 96.5 0.0032 7E-08 59.5 4.4 75 111-185 70-144 (238)
410 PF14727 PHTB1_N: PTHB1 N-term 96.5 1.7 3.8E-05 47.1 30.0 146 111-258 37-203 (418)
411 KOG4441 Proteins containing BT 96.5 0.17 3.7E-06 57.9 19.1 222 67-297 283-537 (571)
412 PRK10115 protease 2; Provision 96.4 3 6.5E-05 49.3 30.1 195 59-258 128-343 (686)
413 PHA02713 hypothetical protein; 96.4 0.32 6.9E-06 55.9 21.0 203 80-293 273-523 (557)
414 KOG2247 WD40 repeat-containing 96.4 0.00067 1.5E-08 70.8 -0.9 278 14-301 33-368 (615)
415 PLN03081 pentatricopeptide (PP 96.3 0.027 6E-07 67.3 12.4 104 647-750 267-387 (697)
416 KOG4499 Ca2+-binding protein R 96.3 1.1 2.5E-05 42.9 21.8 205 70-281 28-263 (310)
417 PF12894 Apc4_WD40: Anaphase-p 96.3 0.015 3.3E-07 40.7 5.7 35 14-49 10-44 (47)
418 KOG2395 Protein involved in va 96.2 0.092 2E-06 56.0 13.8 144 68-217 344-500 (644)
419 PF10647 Gmad1: Lipoprotein Lp 96.2 1.1 2.3E-05 45.7 21.3 145 17-165 25-187 (253)
420 TIGR00990 3a0801s09 mitochondr 96.2 0.022 4.7E-07 67.0 10.3 130 620-749 335-493 (615)
421 KOG3630 Nuclear pore complex, 96.1 0.22 4.8E-06 58.2 17.0 144 101-247 102-261 (1405)
422 KOG2280 Vacuolar assembly/sort 96.1 0.53 1.1E-05 52.9 19.3 200 78-283 63-271 (829)
423 PRK13684 Ycf48-like protein; P 96.0 2.7 5.8E-05 44.9 27.3 268 15-298 45-328 (334)
424 KOG1898 Splicing factor 3b, su 96.0 4.8 0.0001 47.4 32.6 99 28-126 550-668 (1205)
425 PF05096 Glu_cyclase_2: Glutam 95.9 2.1 4.6E-05 42.8 26.0 193 91-291 35-250 (264)
426 PF12894 Apc4_WD40: Anaphase-p 95.8 0.027 5.9E-07 39.4 5.4 34 57-91 11-44 (47)
427 KOG0550 Molecular chaperone (D 95.8 0.016 3.6E-07 59.7 5.8 153 668-827 249-432 (486)
428 TIGR03118 PEPCTERM_chp_1 conse 95.7 2.8 6.1E-05 42.3 25.2 221 60-281 25-307 (336)
429 PF07995 GSDH: Glucose / Sorbo 95.6 3.8 8.2E-05 43.7 27.7 234 17-254 3-330 (331)
430 PLN03218 maturation of RBCL 1; 95.6 0.075 1.6E-06 65.1 11.7 130 619-748 475-639 (1060)
431 PLN03218 maturation of RBCL 1; 95.6 0.14 3E-06 62.9 13.8 147 601-747 419-603 (1060)
432 PLN03077 Protein ECB2; Provisi 95.6 0.099 2.2E-06 64.3 12.8 105 647-751 331-452 (857)
433 PLN03081 pentatricopeptide (PP 95.4 0.15 3.2E-06 61.1 13.1 154 601-762 373-554 (697)
434 PHA03098 kelch-like protein; P 95.3 0.59 1.3E-05 54.0 17.1 184 67-261 293-513 (534)
435 PHA03098 kelch-like protein; P 95.2 0.9 2E-05 52.5 18.4 146 27-176 295-467 (534)
436 KOG2076 RNA polymerase III tra 95.1 0.14 2.9E-06 58.6 10.7 103 653-763 153-268 (895)
437 PRK11788 tetratricopeptide rep 95.1 0.23 5.1E-06 54.7 12.7 75 621-695 112-207 (389)
438 PF10168 Nup88: Nuclear pore c 95.0 6.2 0.00013 46.4 23.9 93 144-262 86-182 (717)
439 PF10647 Gmad1: Lipoprotein Lp 94.9 5 0.00011 40.9 22.0 142 59-206 25-184 (253)
440 TIGR02917 PEP_TPR_lipo putativ 94.9 0.22 4.9E-06 61.8 13.4 149 601-749 614-796 (899)
441 TIGR00990 3a0801s09 mitochondr 94.9 0.19 4E-06 59.2 11.8 46 649-694 409-459 (615)
442 COG1520 FOG: WD40-like repeat 94.8 7.6 0.00016 42.3 30.2 193 29-228 70-279 (370)
443 PRK15363 pathogenicity island 94.8 0.35 7.6E-06 44.0 10.3 112 621-759 12-133 (157)
444 PRK11788 tetratricopeptide rep 94.7 0.16 3.5E-06 56.0 10.3 131 620-750 73-241 (389)
445 KOG3630 Nuclear pore complex, 94.7 0.35 7.6E-06 56.6 12.4 140 145-288 103-260 (1405)
446 KOG1155 Anaphase-promoting com 94.5 0.28 6.1E-06 51.8 10.3 60 665-735 429-491 (559)
447 TIGR02604 Piru_Ver_Nterm putat 94.4 8.9 0.00019 41.6 22.4 140 59-204 15-200 (367)
448 PRK11447 cellulose synthase su 94.4 0.5 1.1E-05 60.1 14.5 102 649-750 583-698 (1157)
449 PHA02790 Kelch-like protein; P 94.4 1.9 4.1E-05 48.8 17.7 180 68-260 271-471 (480)
450 PF10168 Nup88: Nuclear pore c 94.3 14 0.0003 43.7 24.7 80 59-138 86-188 (717)
451 KOG1983 Tomosyn and related SN 94.3 1.8 3.8E-05 53.0 18.1 231 15-263 35-268 (993)
452 PF10602 RPN7: 26S proteasome 94.3 0.22 4.8E-06 47.3 8.4 83 668-750 36-140 (177)
453 PLN03077 Protein ECB2; Provisi 94.3 0.24 5.3E-06 60.9 11.2 156 600-763 536-718 (857)
454 PF14938 SNAP: Soluble NSF att 94.2 0.2 4.4E-06 52.0 9.0 104 654-779 30-143 (282)
455 PRK15174 Vi polysaccharide exp 94.2 0.38 8.3E-06 56.7 12.2 149 600-748 54-237 (656)
456 PHA02790 Kelch-like protein; P 94.1 2.1 4.5E-05 48.5 17.3 144 27-176 272-426 (480)
457 KOG2003 TPR repeat-containing 94.0 0.35 7.6E-06 50.5 9.7 165 594-758 425-648 (840)
458 PRK15174 Vi polysaccharide exp 94.0 0.67 1.5E-05 54.7 13.7 46 650-695 223-277 (656)
459 KOG4626 O-linked N-acetylgluco 93.9 0.49 1.1E-05 51.8 11.0 69 647-715 294-375 (966)
460 PRK10370 formate-dependent nit 93.8 0.47 1E-05 46.2 10.0 85 665-749 70-170 (198)
461 PF07995 GSDH: Glucose / Sorbo 93.8 11 0.00024 40.2 29.0 231 59-296 3-330 (331)
462 TIGR02917 PEP_TPR_lipo putativ 93.6 0.72 1.6E-05 57.3 14.0 127 622-748 709-862 (899)
463 TIGR03074 PQQ_membr_DH membran 93.6 21 0.00045 42.6 37.2 185 111-297 194-473 (764)
464 KOG2076 RNA polymerase III tra 93.5 0.44 9.5E-06 54.7 10.2 62 666-735 205-266 (895)
465 TIGR02604 Piru_Ver_Nterm putat 93.5 3 6.5E-05 45.3 16.6 140 16-160 14-200 (367)
466 TIGR03118 PEPCTERM_chp_1 conse 93.4 9.9 0.00022 38.6 24.4 218 18-239 25-307 (336)
467 TIGR02521 type_IV_pilW type IV 93.3 0.89 1.9E-05 45.4 11.8 47 649-695 75-126 (234)
468 KOG2377 Uncharacterized conser 93.2 2.7 5.9E-05 44.5 14.3 147 68-217 32-185 (657)
469 KOG2377 Uncharacterized conser 93.1 1.8 4E-05 45.6 13.0 139 20-162 27-172 (657)
470 PF12234 Rav1p_C: RAVE protein 93.1 3 6.5E-05 47.5 15.9 101 156-258 42-155 (631)
471 COG3292 Predicted periplasmic 93.0 17 0.00037 40.1 22.4 148 57-215 164-316 (671)
472 PF14761 HPS3_N: Hermansky-Pud 93.0 9.1 0.0002 36.9 16.5 102 28-131 29-165 (215)
473 KOG1916 Nuclear protein, conta 92.9 0.091 2E-06 59.5 3.7 116 9-127 126-263 (1283)
474 PF10313 DUF2415: Uncharacteri 92.8 0.5 1.1E-05 32.0 5.7 32 16-47 1-35 (43)
475 COG5276 Uncharacterized conser 92.8 12 0.00026 37.7 28.6 192 18-218 89-286 (370)
476 KOG4626 O-linked N-acetylgluco 92.8 0.33 7.2E-06 53.0 7.5 44 651-694 196-244 (966)
477 PF13424 TPR_12: Tetratricopep 92.7 1.3 2.7E-05 35.4 9.4 67 669-749 6-72 (78)
478 COG3823 Glutamine cyclotransfe 92.4 5.9 0.00013 37.5 13.9 173 27-205 56-247 (262)
479 PRK11447 cellulose synthase su 92.3 1.2 2.6E-05 56.6 13.2 97 623-719 580-696 (1157)
480 PRK09782 bacteriophage N4 rece 92.2 2.2 4.7E-05 52.4 14.5 94 651-744 521-630 (987)
481 COG5290 IkappaB kinase complex 92.2 0.51 1.1E-05 53.0 8.1 97 666-763 933-1035(1243)
482 PRK09782 bacteriophage N4 rece 92.1 1.1 2.4E-05 54.7 11.9 42 653-694 590-635 (987)
483 KOG1898 Splicing factor 3b, su 92.0 33 0.00071 40.9 31.6 70 15-84 582-668 (1205)
484 PF14938 SNAP: Soluble NSF att 91.9 1.8 4E-05 44.9 11.9 65 670-749 116-181 (282)
485 smart00036 CNH Domain found in 91.9 18 0.0004 37.9 30.2 230 27-269 13-280 (302)
486 PF12234 Rav1p_C: RAVE protein 91.8 3 6.4E-05 47.6 13.8 110 17-128 31-155 (631)
487 PF12895 Apc3: Anaphase-promot 91.4 0.43 9.3E-06 38.9 5.2 75 652-748 2-83 (84)
488 COG3063 PilF Tfp pilus assembl 91.3 2.5 5.4E-05 40.8 10.7 109 653-763 56-184 (250)
489 KOG2047 mRNA splicing factor [ 91.3 1.3 2.8E-05 49.1 9.8 206 611-822 129-413 (835)
490 PRK15359 type III secretion sy 91.3 2.1 4.6E-05 39.1 10.3 80 648-748 33-117 (144)
491 PF13432 TPR_16: Tetratricopep 91.1 0.3 6.5E-06 37.4 3.8 46 649-694 7-57 (65)
492 PF08728 CRT10: CRT10; InterP 91.0 8.8 0.00019 44.4 16.5 144 27-172 49-245 (717)
493 KOG0686 COP9 signalosome, subu 91.0 0.71 1.5E-05 48.1 7.2 83 668-750 150-256 (466)
494 PF13414 TPR_11: TPR repeat; P 90.8 0.42 9.1E-06 37.0 4.5 61 667-748 2-63 (69)
495 TIGR02521 type_IV_pilW type IV 90.8 1.8 3.8E-05 43.2 10.3 98 651-748 43-160 (234)
496 PF14781 BBS2_N: Ciliary BBSom 90.7 11 0.00024 33.2 13.9 120 18-140 1-135 (136)
497 PF14761 HPS3_N: Hermansky-Pud 90.7 17 0.00036 35.2 19.3 56 234-291 22-79 (215)
498 PF10313 DUF2415: Uncharacteri 90.6 1.3 2.8E-05 30.1 5.8 32 100-131 1-35 (43)
499 PF13176 TPR_7: Tetratricopept 90.5 0.35 7.5E-06 31.8 3.1 23 671-693 2-24 (36)
500 KOG4460 Nuclear pore complex, 90.4 5.6 0.00012 43.0 13.2 97 144-265 105-204 (741)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-148 Score=1124.50 Aligned_cols=793 Identities=67% Similarity=1.169 Sum_probs=781.5
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002502 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (915)
+++++++++..|+++|+++.|||..+|++++.++|.|.|||++++.+++++...+-||++..|.+..+|+++|++|+.|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||+++|+++++.|.+|++.|+|++.+|+.++++++|+|.+|++||++..+.+.+++.+|.+.|++++|+|+|.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC
Q 002502 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 242 (915)
.|++|++|.+.++.+.+++.+|..+|+|++|.+.|++|||++|++|.+|++||+++..|++++.+|..+|+.++|+|.-+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecce
Q 002502 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i 322 (915)
++++||+||+|+||+..|+++..+++...+++|+++-.+.++.+++|+++|.+.+.++++.|.++|+.+|+++|+.++++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEecC-C
Q 002502 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD-G 401 (915)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~d-g 401 (915)
+..++++.....++.||+++++.++++++++.+|+.+++||+|+++++|+||+++||+...||++.+|....++|++| +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSN 400 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCC
Confidence 999999998888899999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEecCCeEEEeccCcceeeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEeccccEEEEcCCCCEEEEE
Q 002502 402 EYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 481 (915)
Q Consensus 402 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~ 481 (915)
.|++..+++.|+++ ++|++.+++++.++.+.|+||.+|++.+++.++||||++++++++++...+.+.|+.+|.+|+++
T Consensus 401 e~avRes~~~vki~-knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 401 EFAVRESNGNVKIF-KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIA 479 (794)
T ss_pred eEEEEecCCceEEE-ecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEecCCCEEEEE
Confidence 88999899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEecccc
Q 002502 482 SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRP 561 (915)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (915)
+++.+|++.+|++.+....+++..++++|.+++|+.+.+..+.++++.|.+|||||+|.+++++|+++++..++.+++.+
T Consensus 480 ~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~ 559 (794)
T KOG0276|consen 480 GDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI 559 (794)
T ss_pred ecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccC
Q 002502 562 MYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATD 641 (915)
Q Consensus 562 ~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~ 641 (915)
+|+++|+++++|+|+.|++.++++|.+.+.+++||++++++|++.|.++|++||.++++++++||+++|++++||+++.|
T Consensus 560 mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D 639 (794)
T KOG0276|consen 560 MYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD 639 (794)
T ss_pred hhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002502 642 PDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (915)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~ 721 (915)
|+++|+++|++|+++.|+++|.+.+++.+|++||++|++.+++.+|.+||.+++|+.+|+++|...|+++++..++..+.
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcChhhhhhcCCCccCC
Q 002502 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYS 796 (915)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~ 796 (915)
.+|++|.||.|+++.|++++|.+++++++|++||+.|||+|+|+++++++.+|++.|.+.++|+|++|++|++|+
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k~~~sladp~~~~ 794 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEKAAESLADPEEYS 794 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhhhhhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-84 Score=684.49 Aligned_cols=721 Identities=27% Similarity=0.520 Sum_probs=632.2
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
..+|...+.+|..++|||..+|++++..+|.|++||++-+.++..|..|++||+.+.|+|++..+++|++|-.|+||+++
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.+++.++.+|-+.|+.+.|++.-+.|+++|+|.+|+||++.++ .+..++.+|.++|+|..|+| ....++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence 99999999999999999999999999999999999999999998 89999999999999999999 88999999999999
Q ss_pred EEEECCCCC-----------------------------CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC
Q 002502 168 KIWNLGSPD-----------------------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 168 ~i~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++||+..-+ ....+.+|..+|+.++|+|.-. ++++|++|+.|++|.+..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEecc
Confidence 999985310 1235678999999999998655 899999999999999875
Q ss_pred Cc--EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEE
Q 002502 219 KS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 219 ~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~ 296 (915)
.+ .+.+..+|.++|+++-|+|...+|++.|+|++|++||+.....++++....++.|.++.+|..+++++|.+.|.+.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 44 4567789999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---C
Q 002502 297 VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---D 373 (915)
Q Consensus 297 i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---~ 373 (915)
+.+.+++|.++++.+ .+++.+...++.+++.+. .......++..+..-.++.+++++|....+.+|+ +
T Consensus 318 FkleRErpa~~v~~n-~LfYvkd~~i~~~d~~t~--------~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 318 FKLERERPAYAVNGN-GLFYVKDRFIRSYDLRTQ--------KDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred EEEcccCceEEEcCC-EEEEEccceEEeeecccc--------ccceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 999999999999865 455666888887776432 1112233444555567889999999988888884 6
Q ss_pred CcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCeEEEeccCcceeeeeecCcccceee--cCcEEEEe
Q 002502 374 GEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY--GGTLLAMC 443 (915)
Q Consensus 374 ~~~~i~~~~~~~-------~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~--~g~~La~~ 443 (915)
+.+.+|.+.... ....++.....|-..+++++... +..+.+-++..+..+.+..+-+.+.|+ |...|...
T Consensus 389 ~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 389 GEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR 468 (1202)
T ss_pred CeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE
Confidence 788888655431 11234455667777778877776 567777666665555555544455555 44577777
Q ss_pred eCCeEEEEeccCCcEEEEEe-ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeee
Q 002502 444 SNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETN 522 (915)
Q Consensus 444 ~~~~i~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 522 (915)
+.+.|.+||++..+.+..+. ..++.+.||.|+.++|..++..+.+...+.+. ...++| .
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~l-------------------~~sihE-t 528 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLEL-------------------LCSIHE-T 528 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchhh-------------------eecchh-e
Confidence 78899999999999988888 48999999999999999999999886533222 344555 6
Q ss_pred eeEEeeEEecC-EEEEEccCCeEEEEE-CCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHH
Q 002502 523 ERVRTGLWVGD-CFIYNNSSWRLNYCV-GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM 600 (915)
Q Consensus 523 ~~i~~~~w~~~-~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 600 (915)
.+|++++|+++ +|||+|. ++|.|.+ +|+.+.+..++.++|+.+ .+++.+||+++++.+....++.....|..+++
T Consensus 529 iriksgawde~gVfiYtT~-nHikYal~~GD~GIikTLd~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy~FKlALi 605 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYTTL-NHIKYALENGDSGIIKTLDKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEYRFKLALL 605 (1202)
T ss_pred eEeeeceeccCceEEEEeh-hhhhhhhccCCcceEEecccceEEEE--eeCCEEEEEecCCCeEEEeechHHHHHHHHHH
Confidence 89999999996 9999998 8999988 899999999999999998 58999999999999999999999999999999
Q ss_pred ccCHHHHhhhcCCCCcchH--HHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHH
Q 002502 601 RGDLERANEILPSIPKEHH--NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELA 678 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~a 678 (915)
++++++-..+ |....+ +.+..||+|+|+++.||++.+|+..+|+++|+.|+++.|++.|++++++..|+.||+.|
T Consensus 606 ~k~ydeVl~l---I~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~A 682 (1202)
T KOG0292|consen 606 NKKYDEVLHL---IKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEA 682 (1202)
T ss_pred hhhhHHHHHH---HHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999986666 445554 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHH
Q 002502 679 MSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALM 758 (915)
Q Consensus 679 l~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ 758 (915)
+.+||..+||.||.+.+++++|.+||..+|+.+++++++++|+..++..--++.++|+|+.++-.+++..+|+.+.|..-
T Consensus 683 l~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 683 LRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred HHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChH
Q 002502 759 ARSYLPSKV 767 (915)
Q Consensus 759 ar~~~~~~~ 767 (915)
|.+++.+..
T Consensus 763 a~~~G~~~~ 771 (1202)
T KOG0292|consen 763 AAAHGLEDQ 771 (1202)
T ss_pred HhhcCcHHH
Confidence 999987443
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=5.7e-69 Score=573.45 Aligned_cols=433 Identities=59% Similarity=1.051 Sum_probs=358.8
Q ss_pred cceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccceeEEEEec
Q 002502 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSS 399 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 399 (915)
++++.+++++... +.||+.+++..++++.+..+|+.+.++|+|++++++++|++.+|+...++++.+|....++|++
T Consensus 2 ~~i~~~~~~~~~~---~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 2 NEIRTANLKNISE---IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS 78 (443)
T ss_dssp TEEEEEE--S--------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T
T ss_pred CceEEEECcCCCc---cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec
Confidence 5677788777654 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCeEEEeccCcceee--eeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEecc-ccEEEEcCCCC
Q 002502 400 DGEYAVRESSSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVT-VKNLYWADSGD 476 (915)
Q Consensus 400 dg~~l~~~~~~~v~v~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~-i~~v~~s~dg~ 476 (915)
+++|++..++++|.|+ .+++... .+...++.+.|++|.+|++.+++.|++|||++++.+++++.. |+.|.||++|+
T Consensus 79 ~n~yAv~~~~~~I~I~-kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIY-KNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGE 157 (443)
T ss_dssp SSEEEEE-TTS-EEEE-ETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSS
T ss_pred CccEEEEECCCeEEEE-EcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCC
Confidence 9999999999999997 5666655 677789999999999999999999999999999999999975 79999999999
Q ss_pred EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEE
Q 002502 477 LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMF 556 (915)
Q Consensus 477 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~ 556 (915)
+||+.+++.++++.++.+.+.. .+++|.+++|+.++|+..+|++++|+++||+|+|.+ +++|+++|+.+++.
T Consensus 158 ~val~t~~~i~il~~~~~~~~~-------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~ 229 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAA-------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIA 229 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHH-------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEE
T ss_pred EEEEEeCCeEEEEEecchhccc-------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEE
Confidence 9999999999999999988776 667899999999999999999999999999999995 99999999999999
Q ss_pred ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHH------HhhhcCCCCcchHHHHHHHHHhCC
Q 002502 557 HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLER------ANEILPSIPKEHHNSVARFLESRG 630 (915)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~l~~i~~~~~~~~~~~~~~~~ 630 (915)
+++.++|++|+.++.+++|++|+++++..+.+++.+++|+++++++|+++ +..++++||.++++++++||+++|
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred ChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH
Q 002502 631 MIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA 710 (915)
Q Consensus 631 ~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~ 710 (915)
+++.||++++||+++|++||++|+++.|+++|+.++++.+|++||+.|+.+|++++|++||.+++|+++|.+||..+||.
T Consensus 310 ~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 310 YPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp -HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred CHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002502 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (915)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~ 764 (915)
+++++|++++...|+.+.||++++++||+++|++++++++|+++|+.+||+|+|
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-49 Score=378.35 Aligned_cols=330 Identities=24% Similarity=0.366 Sum_probs=295.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (915)
....+.||.++|.|++|+|+|..|++|+.|.++++||+.+.....+.++|...|.|++|+|||+.||+|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcee-EEEecCCCCEEEEEEcC-----CCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 87 NTMDKV-KVFEAHTDYIRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 87 ~~~~~~-~~~~~~~~~i~~l~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
++|+.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+ .+...+.+|+.+|+|++|- ...++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEe
Confidence 998876 56899999999999976 4668999999999999999988 8889999999999999997 4789999
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC-----------CC-----------------------cCEEEEEE
Q 002502 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----------GD-----------------------KPYLITGS 206 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~-----------------------~~~l~~~~ 206 (915)
|+.|++|++|+...+.....+.+|...|+.++.+.+ +. ...+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 999999999999999999999999999999988721 11 12499999
Q ss_pred CCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCe
Q 002502 207 DDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRR 285 (915)
Q Consensus 207 ~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~ 285 (915)
+|.++.+|+... .+++..+.+|..-|..+.|+||+++|++++.|..|++|+..+|+.+.++.+|...|+.++|+.|.++
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 999999999754 5588889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC
Q 002502 286 IVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG 365 (915)
Q Consensus 286 l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g 365 (915)
|++|+.|.++.+|.-+... ...+++.|...+..+.|+|||
T Consensus 424 lVS~SkDsTLKvw~V~tkK----------------------------------------l~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK----------------------------------------LKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred EEEcCCCceEEEEEeeeee----------------------------------------ecccCCCCCceEEEEEecCCC
Confidence 9999999999997322111 123467778888899999999
Q ss_pred CEEEEEc-CCcEEEE
Q 002502 366 RFVVVCG-DGEYIIY 379 (915)
Q Consensus 366 ~~lav~~-~~~~~i~ 379 (915)
+.++.++ |..+.+|
T Consensus 464 ~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLW 478 (480)
T ss_pred ceeecCCCceEEEee
Confidence 9999888 5556665
No 5
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=379.03 Aligned_cols=670 Identities=15% Similarity=0.194 Sum_probs=478.2
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+....| .|..++|-|||..|+.+. +..+.|||...|..++++++|+..|.|++|+.||+.+++|+.|..|.+|+.+-
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred hccccc--chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 333445 799999999999888876 56799999999999999999999999999999999999999999999998543
Q ss_pred CceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 89 MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 89 ~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
...++ .|.+.|.||.|+|-...|++|+-. ..-+|......... ......+.+++|+. |+++|+.|-.+|+|
T Consensus 85 ---EG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtn-DGqylalG~~nGTI 156 (1081)
T KOG1538|consen 85 ---EGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTN-DGQYLALGMFNGTI 156 (1081)
T ss_pred ---cceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecC-CCcEEEEeccCceE
Confidence 22232 699999999999999999999875 46789876542211 12346788999998 99999999999999
Q ss_pred EEEECCCCCCceEEe---cCCCCeeEEEEEeCC---CcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC
Q 002502 168 KIWNLGSPDPNFTLD---AHQKGVNCVDYFTGG---DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 241 (915)
.+-+- ++++...+. +...+|.+++|+|+. ....+++.....++.++.+. |+.+..-+...-...|+.+.++|
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC
Confidence 99865 444444443 467889999999864 34478889999999999886 66665444455567799999999
Q ss_pred CEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecc
Q 002502 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
.+++.|+.|+.+++|. +.|-.+.++......||+++..|+++.+++|+.||++..+..-...+.+++.+......+..+
T Consensus 235 Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtD 313 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTD 313 (1081)
T ss_pred cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHH
Confidence 9999999999999998 668888888888889999999999999999999999998755555555555544444444444
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCcc-----ce-eEE
Q 002502 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFG-----SA-LEF 395 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~-----~~-~~~ 395 (915)
+.+.+ +..++.+.+..+++ +..+++-. ..||+--..++.+|...+.+.+... .+ ..+
T Consensus 314 VivQh---------Li~~qkvrIkC~DL------VkKiaiYr--nrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf 376 (1081)
T KOG1538|consen 314 VIVQH---------LITEQKVRIKCKDL------VKKIAIYR--NRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKF 376 (1081)
T ss_pred HHHHH---------HhhcceeeeeHHHH------HHHHHhhh--hhheecccceEEEEeccccccccchhHHHHHHHhhc
Confidence 33322 34455555544443 23333333 3477777888899977665433221 11 112
Q ss_pred EEe---cCCcEEEEecCCeEEEeccCcceeeeeecCccc----ceee----cCcEEEEeeCC--eEEEE-eccCCcEEEE
Q 002502 396 VWS---SDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSA----ERIY----GGTLLAMCSND--FICFY-DWAECRLIRR 461 (915)
Q Consensus 396 ~~s---~dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~----~~i~----~g~~La~~~~~--~i~~~-d~~~~~~i~~ 461 (915)
.+| -.+..++...+.++.-+| |.+.....+.+.. -.+. |..-|.+|..+ ..++| |-.-.-++.+
T Consensus 377 ~cSLlVVc~~HiVlCqekrLqClD--F~Gvk~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~ 454 (1081)
T KOG1538|consen 377 ECSLLVVCANHIVLCQEKRLQCLD--FSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK 454 (1081)
T ss_pred cceEEEEEcCeEEEEcccceeeec--ccchhhhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec
Confidence 111 234455555556666654 3333322220000 0011 23356666655 34444 3333334444
Q ss_pred EeccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEec---CEEEEE
Q 002502 462 IDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG---DCFIYN 538 (915)
Q Consensus 462 ~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~---~~~i~~ 538 (915)
-...|+++.+|.+.+.||+..+...++|. .+.. =+.+.+ +..+.+.+|+. ++|.|+
T Consensus 455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~--------DI~t------------~elL~Q-Epg~nSV~wNT~~E~MlcfT 513 (1081)
T KOG1538|consen 455 QATAVRCLDINASRKKLAVVDDNDTCLVY--------DIDT------------KELLFQ-EPGANSVAWNTQCEDMLCFT 513 (1081)
T ss_pred ccceeEEeeccCCcceEEEEccCCeEEEE--------EccC------------CceEee-cCCCceEEeeccccceEEEe
Confidence 44689999999999999999999888875 1111 122333 45677888884 899998
Q ss_pred ccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcch
Q 002502 539 NSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEH 618 (915)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~ 618 (915)
+. |.++.-.+..++.- .+...+++|| .+++++|+ +..++....+......
T Consensus 514 ~~-g~L~VR~~~~P~h~--qk~~G~VvG~--~gsk~FCL-~~~~i~~~evp~~~~m------------------------ 563 (1081)
T KOG1538|consen 514 GG-GYLNVRASTFPVHR--QKLQGFVVGY--NGSKIFCL-HVFSISAVEVPQSAPM------------------------ 563 (1081)
T ss_pred cC-CceEEEeccCCcch--hcceEEEEEe--cCceEEEE-Eeeeeecccccccccc------------------------
Confidence 87 77776654443322 3344577886 68888887 2222222222211111
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc
Q 002502 619 HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS 698 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~ 698 (915)
.++++.|.+++|+++|+.......|+.||..|+...+|++|.++|.|.+|..
T Consensus 564 ----------------------------~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~ 615 (1081)
T KOG1538|consen 564 ----------------------------YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLR 615 (1081)
T ss_pred ----------------------------hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccH
Confidence 2236778899999999999899999999999999999999999999999998
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcC---CchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-ChHHHHH---
Q 002502 699 GLLLLYSSLGDAEGISKLASLAKEQG---KNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIV--- 771 (915)
Q Consensus 699 ~l~~l~~~~g~~~~~~~l~~~~~~~~---~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~-~~~~~~~--- 771 (915)
.|.+ +.+|.+...... ...+|.. +.+.|+|.||.++|.++|+-..|++|..++.+ ..+.+.+
T Consensus 616 ~L~l----------i~EL~~~k~rge~P~~iLlA~~-~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 616 YLEL----------ISELEERKKRGETPNDLLLADV-FAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHH----------HHHHHHHHhcCCCchHHHHHHH-HHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcC
Confidence 8777 555555554433 2344444 44899999999999999999999999999977 6666666
Q ss_pred -HHHHHhhhhcChhhhhhcCCCccCCCcccc
Q 002502 772 -AIWRKDLQKVNPKAAESLADPEEYSNLFDD 801 (915)
Q Consensus 772 -~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~ 801 (915)
.+-|+.|..+...||....+|....+|+..
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLIS 715 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhc
Confidence 577888998888899999999887777753
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-43 Score=352.17 Aligned_cols=459 Identities=21% Similarity=0.341 Sum_probs=366.5
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEE
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIR 82 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~ 82 (915)
....+.+|+..++-..|||.|-|+|+|...|+|+|||....+ +..+++...++|..++|++++++|++.++ +...+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 345678999999999999999999999999999999976533 33467788999999999999999988765 33444
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
++-+++|..+..+.+|...|.+++|-|..+ ++++|++|++|.+|.-... +....+..|...|.|+.|+| |+..|++.
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysP-DG~~Fat~ 208 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSP-DGSRFATA 208 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECC-CCCeEEEe
Confidence 455557889999999999999999999887 4889999999999986655 66677888999999999999 89999999
Q ss_pred ECCCcEEEEECCCCCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE---------------
Q 002502 162 SLDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--------------- 223 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------- 223 (915)
+.||+|.+||-.+++.+..+. +|.+.|..++|+|++. .+++++.|.+++|||..+.++++
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 999999999999999998887 8999999999999998 59999999999999987665433
Q ss_pred ----------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeee-ccCCccE
Q 002502 224 ----------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERV 274 (915)
Q Consensus 224 ----------------------------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v 274 (915)
.+.+|...|+++..+|++++|++|+.||.|.-|+..++..-... ..|...|
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 34589999999999999999999999999999999888755443 5677889
Q ss_pred EEEEEecCCCeEEEEecCCeEEE-------------ecCCCcceeEEcCCC-cEEEEeecceEEEEeeecccceeccCCc
Q 002502 275 WAIGYMKSSRRIVIGYDEGTIMV-------------KIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 275 ~~i~~s~~~~~l~~g~~dg~v~i-------------~~~~~~~~~~~~~~g-~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
.+++.+..+.++.+|.+|..-++ .++.++...+...++ .++.....++.+++ +..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~-----------~~~ 435 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ-----------DQT 435 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe-----------cCC
Confidence 99998877776666665544444 234445555555553 55555666665544 111
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-------ccCccceeEEEEecCCcEEEEec-CCe
Q 002502 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSK 411 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~s~dg~~l~~~~-~~~ 411 (915)
.+.. ......+.+++++|+++.+|+++ |+++++|.+.... ..+.+.++++++|||+.|+|++. .++
T Consensus 436 ~~~~-----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 436 KVSS-----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred ccee-----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 1111 12345678999999999999999 9999999887643 34568899999999999999988 799
Q ss_pred EEEeccCcceeeeeec----------CcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEe----ccccEEEEcCCCC
Q 002502 412 IKIFSKNFQEKRSVRP----------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID----VTVKNLYWADSGD 476 (915)
Q Consensus 412 v~v~~~~~~~~~~~~~----------~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~ 476 (915)
+.+||+..++.....+ +++|+ ..+||+|+-| .|.+|+++.....-.++ ..|+.+.|-.+.+
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t 586 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST 586 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCce
Confidence 9999987665544443 55666 8899999999 99999998665443333 3699999998876
Q ss_pred EEEEEeCCeEEEE
Q 002502 477 LVAIASDTSFYIL 489 (915)
Q Consensus 477 ~la~~~~~~~~~~ 489 (915)
.+.++.+..+-+|
T Consensus 587 vvSsG~Da~iK~W 599 (603)
T KOG0318|consen 587 VVSSGQDANIKVW 599 (603)
T ss_pred EEeccCcceeEEe
Confidence 6555544445455
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-44 Score=344.49 Aligned_cols=324 Identities=21% Similarity=0.349 Sum_probs=285.3
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+..++.+|..+|.|+.|+|+|..|++|+.|.++++||+.|..+..+.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEec----CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+++......+.+|...|++++|.| ....+|++++.||+|+|||+..++.+..+.+|..+|+|++|-. .+ ++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g-liyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG-LIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc-eEEe
Confidence 999889999999999999999987 2567899999999999999999999999999999999999943 33 8999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCccCeEEEEEe-----------CCCC-------------------------EEEEEE
Q 002502 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----------PELP-------------------------IIITGS 248 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-----------~~~~-------------------------~l~~~~ 248 (915)
|+.|++|++|+...|.+.+.+++|...|+.++.+ |.+. .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999877 2232 499999
Q ss_pred cCCeEEEEeCCC-ceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEe
Q 002502 249 EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNI 327 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~ 327 (915)
.|+++.+|+... .+++....+|..-|..+.||||++++|+++-|..|++|.++.. +.+..
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~las---------- 404 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLAS---------- 404 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhh----------
Confidence 999999999654 4477788889999999999999999999999999999865533 22211
Q ss_pred eecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-----CccceeEEEEecCC
Q 002502 328 KSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-----SFGSALEFVWSSDG 401 (915)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-----~~~~~~~~~~s~dg 401 (915)
+..+-..+..++||.|.++|+.|+ |.++.+|++...+.. +...+.++.|+|||
T Consensus 405 ---------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 405 ---------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred ---------------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 233444667899999999999999 899999998876533 44678999999999
Q ss_pred cEEEEec-CCeEEEe
Q 002502 402 EYAVRES-SSKIKIF 415 (915)
Q Consensus 402 ~~l~~~~-~~~v~v~ 415 (915)
+.++++. |..+++|
T Consensus 464 ~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLW 478 (480)
T ss_pred ceeecCCCceEEEee
Confidence 9999888 6778888
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=348.69 Aligned_cols=458 Identities=18% Similarity=0.328 Sum_probs=379.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC--------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (915)
..+|.|+.|||+|+++|+|. .+.+.||..... .+.+++.+|...|.++.|+.|.++|++|+.|..+++|.+
T Consensus 96 k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v 174 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGV 174 (893)
T ss_pred cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEe
Confidence 57899999999999999987 568999986542 234567788999999999999999999999999999999
Q ss_pred CCCce--eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC-----------------------Cce--------
Q 002502 87 NTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK-----------------------GWM-------- 133 (915)
Q Consensus 87 ~~~~~--~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~-----------------------~~~-------- 133 (915)
+..+. ...+.+|.++|....|..+...+.+.+.||.+.+|.... +..
T Consensus 175 ~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 175 DGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred ccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 87666 566789999999999999999999999999999997761 001
Q ss_pred E--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECC-Ce
Q 002502 134 C--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-HT 210 (915)
Q Consensus 134 ~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~ 210 (915)
. ...+......+++..|++ ..+.|++|-..|...+|.+.....+..+.-...+|..+.|+..|+ +++.|+.. |.
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA~g~~klgQ 331 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIAFGCSKLGQ 331 (893)
T ss_pred EEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEEEcCCccce
Confidence 0 111222347799999999 889999999999999999999999999988889999999998888 89988765 89
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
+-+|+.++...+...++|...+++++++|||+++++|++||.|++||...+-+..++..|...|+.+.|+..|+.+++.+
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEecCC----------Ccc----eeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002502 291 DEGTIMVKIGR----------EEP----VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 291 ~dg~v~i~~~~----------~~~----~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
-||+|+.|..+ +.| ..+.+++|.++.+...+..-+-+ |++++|+.+-+ +..|+.++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv------WS~qTGqllDi----LsGHEgPV 481 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV------WSVQTGQLLDI----LSGHEGPV 481 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE------EEeecCeeeeh----hcCCCCcc
Confidence 99999998532 112 34667889999887776655544 56788886654 58899999
Q ss_pred ceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccee-------
Q 002502 357 QSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK------- 422 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~~------- 422 (915)
.+++|+|.|..|++++ |.++.+|++.... ......++.++|+|||+-+++.+ +|.|.+||.+....
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR 561 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence 9999999999999999 9999999887542 23446789999999998877777 99999999331000
Q ss_pred ---------------------eeee-cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEe----------------
Q 002502 423 ---------------------RSVR-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---------------- 463 (915)
Q Consensus 423 ---------------------~~~~-~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~---------------- 463 (915)
+.+. .+|++| |..+++++.. .||+||+.++-++++++
T Consensus 562 kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~ 637 (893)
T KOG0291|consen 562 KDLSGGRKETDRITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNR 637 (893)
T ss_pred hhccccccccceeehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhcc
Confidence 0111 156666 6665555554 99999999886555431
Q ss_pred -------------------------------------------ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 464 -------------------------------------------VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 -------------------------------------------~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|.+|.|||.|+..|+++..++.++.
T Consensus 638 rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYs 707 (893)
T KOG0291|consen 638 RKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYS 707 (893)
T ss_pred ccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEe
Confidence 135678999999999999999998864
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-43 Score=344.59 Aligned_cols=283 Identities=25% Similarity=0.365 Sum_probs=272.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCc
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
+-+.+|..+.||+|+..||||+-+|.++||+..+...+.+|.+|...|.++.|+|. +..+|+|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56789999999999999999999999999999999999999999999999999997 5689999999999999999989
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.+..+.+|...|..++|+|+|++|++++.|.+-++||++++ .......+|...|.+++|+| ||.++++|+.|..-+||
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW 330 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999998 55666789999999999999 99999999999999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEEEEEc
Q 002502 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~ 249 (915)
|++++.++..+.+|..+|..++|+|+|- .+++|+.|++++|||++..+.+.++.+|..-|+.++|+| .|.+|++++.
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCce--EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 9999999999999999999999999998 699999999999999999999999999999999999999 7889999999
Q ss_pred CCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
|++++||...++.+++++.+|.+.|.++..+++++.+++++.|.++++|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999999999999999999983
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.7e-41 Score=315.62 Aligned_cols=291 Identities=23% Similarity=0.422 Sum_probs=273.2
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
++..++.|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.++.....|..++|+|.|+++|+|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 45566899999999999999999999999999999999999998888989988999999999999999999999999999
Q ss_pred EECCCC------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002502 84 YNYNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 84 wd~~~~------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
|++.+. ...+.+.+|.+.+.|+.|-+|+ .|+++|.|.+..+||++++ +..+.|.+|.+.|+++.++|.+++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCe
Confidence 999865 3456788999999999999855 6999999999999999999 8888999999999999999989999
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC--CccCeEEE
Q 002502 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAV 235 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v 235 (915)
|++|+.|++.++||++.+...+++.+|...|++++|.|+|. -+++|++|++.++||++..+.+..+.. ...+|+++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999998 599999999999999999888877763 34579999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+||..|++|++|..|..+.+||.-.++.+..+.+|..+|.++..+|||..+++|+-|..++||
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-38 Score=317.05 Aligned_cols=426 Identities=17% Similarity=0.264 Sum_probs=341.6
Q ss_pred hcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002502 10 KLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
.+.||+.+|.+++|-|..+ ++++|+.|+.|.+|+-...+...++..|..-|+|+.|+|||.++++.+.||.|.+||=.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4679999999999999998 588999999999999777788888889999999999999999999999999999999999
Q ss_pred CceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee-cCC--cceEEEEEecCCCCEEEEEE
Q 002502 89 MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS--HYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 89 ~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~~i~~~~~~p~~~~~l~~~~ 162 (915)
|+++..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+. .+.+.+. +.. .....+.|. ...|++.+
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq---kd~lItVS 297 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS 297 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence 99999998 89999999999999999999999999999999998 5555543 222 344556675 56899999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCC
Q 002502 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPEL 241 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~ 241 (915)
.+|+|.+++...+.+...+.+|...|+++..+++++ +|++|+.||.|.-|+..++..-+.. ++|...|.+++.+..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 999999999999999999999999999999999986 8999999999999999988765444 6789999999988765
Q ss_pred CEEEEEEcCCeEEEEeCCCceeeee--eccCCccEEEEEEecCCCeEEEEecCCeEEEe---------cCCCcceeEEcC
Q 002502 242 PIIITGSEDGTVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK---------IGREEPVASMDN 310 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~---------~~~~~~~~~~~~ 310 (915)
. +++.+.|.++++.++.....-.. +.....+ .+++..+++..+++.+.++.+.+. ++-..+..++.+
T Consensus 376 ~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP-~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 376 E-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP-KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred c-EEEEecCCeEEEEecccCcccccceeecCCCc-eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 4 67778888999998754332221 2333233 388888888888888888877775 233445667777
Q ss_pred CCcEEEEe--ecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc
Q 002502 311 SGKIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR 387 (915)
Q Consensus 311 ~g~~~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~ 387 (915)
++..+... ...++++.+... .... .-.+..+...++.+++||||.+||++. .+++.+|+......+
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~---------~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGD---------ELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred CCCEEEEecccceEEEEEecCC---------cccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 77777664 344556554332 2111 111245677899999999999999998 899999988765432
Q ss_pred ------CccceeEEEEecCCcEEEEec-CCeEEEeccCcceeeeeecCcccceee-----cCcEEEEeeCC-eEEEEecc
Q 002502 388 ------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY-----GGTLLAMCSND-FICFYDWA 454 (915)
Q Consensus 388 ------~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~-----~g~~La~~~~~-~i~~~d~~ 454 (915)
+...+.+++|+|+++++|+++ |..|.||+++.+........-++.++. +...|++.+.| .|++|.+.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 346789999999999999999 899999998876655333344444333 56788888888 99999863
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-39 Score=334.78 Aligned_cols=435 Identities=19% Similarity=0.283 Sum_probs=357.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
...|+|+.-+|+..+||+|-.||.|+||+..++....++.+|+..|+++.|...|.+|++|+.|+.|.+||+-...-...
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999988777888
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002502 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
+.+|.+.|+.+-|..+.+++++++.|+.|++||+++. .+..+...|...++.+++.+ +.+++++.|+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeec
Confidence 9999999999999998889999999999999999998 88888889999999999975 7899999999999999710
Q ss_pred C------------------------CC-----------------------------------------------------
Q 002502 175 P------------------------DP----------------------------------------------------- 177 (915)
Q Consensus 175 ~------------------------~~----------------------------------------------------- 177 (915)
. ..
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 0 00
Q ss_pred -----------------------------------------------------------------ceEEecCCCCeeEEE
Q 002502 178 -----------------------------------------------------------------NFTLDAHQKGVNCVD 192 (915)
Q Consensus 178 -----------------------------------------------------------------~~~~~~~~~~v~~~~ 192 (915)
...+.+|...|.+++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 012234556677777
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCc
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 272 (915)
++.+.. ++..+..+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+..++.++..|.+
T Consensus 381 vS~d~~---~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 381 VSSDSI---LLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred eecCce---eeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 776553 44455578999999999999999973 4788999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCc
Q 002502 273 RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC 352 (915)
Q Consensus 273 ~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (915)
.+|+++.+||+..+++|+.|.+|.+|....... .....+.+ +.+ ...+. -..
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k~---------lsl---------~~~rt--------Lel 507 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKKV---------LSL---------KHTRT--------LEL 507 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCccccee---------eee---------ccceE--------Eec
Confidence 999999999999999999999999984221110 00000000 110 00010 112
Q ss_pred ccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccCccee-ee
Q 002502 353 DLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK-RS 424 (915)
Q Consensus 353 ~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~~-~~ 424 (915)
+..+.++++||||++||++- |+++.+|.....+ ..+.-++.++..|||++.+++++ |..|+||-++|..- ++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 33567999999999999998 9999999766553 23445889999999999999999 89999999887542 21
Q ss_pred e-------e-cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEec---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 425 V-------R-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 425 ~-------~-~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
+ . ..|-|+ ..+..+++.+ .|+.||-+.-+.++.+.+ .|++++.+|+|.++++++.|..+++|
T Consensus 588 ~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 1 1 156676 6677777777 999999888888888874 89999999999999999999888877
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=309.70 Aligned_cols=430 Identities=15% Similarity=0.230 Sum_probs=349.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--- 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~--- 89 (915)
.+...|++++.||+|.+|++....|...+-++.....++.+. .+.+|.|+.|||+|+++|+|.. +.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN 130 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc
Confidence 466789999999999999999999999999988887777776 5678999999999999988864 67999976432
Q ss_pred -----ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce-EEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 90 -----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 -----~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
...+++.+|.+.|.++.|+.|.++|++|+.|.++++|+++..+. ....+.+|..+|..+.|.. +...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEEEEec
Confidence 23456678999999999999999999999999999999986522 3567889999999999988 8888999999
Q ss_pred CCcEEEEECCC-----------------------CCC-----ce------EEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 164 DRTIKIWNLGS-----------------------PDP-----NF------TLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 164 dg~i~i~d~~~-----------------------~~~-----~~------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
||.+.+|.... ++. .. -+......|++.+|++..+ +|++|...|
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~--~lvvgFssG 287 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN--LLVVGFSSG 287 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce--EEEEEecCC
Confidence 99999998751 011 00 0122336789999998776 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEE
Q 002502 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 288 (915)
...+|.+..-.+++.+.-...+|..++|+..|.+|+.|+.. |.+-+|+..+...+...++|..++.+++++|||+++|+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999999999999999888999999999999999998754 89999999988888889999999999999999999999
Q ss_pred EecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002502 289 GYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 289 g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
|++||.|++|..... -.+ -.+..+...++.+.|+..|+.+
T Consensus 368 G~eDgKVKvWn~~Sg------------------------------------fC~----vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSG------------------------------------FCF----VTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ccCCCcEEEEeccCc------------------------------------eEE----EEeccCCCceEEEEEEecCCEE
Confidence 999999999842221 111 1124556678899999999999
Q ss_pred EEEc-CCcEEEEEeecccc------cCccceeEEEEecCCcEEEEec-C-CeEEEeccCcceeee---------eecCcc
Q 002502 369 VVCG-DGEYIIYTALAWRN------RSFGSALEFVWSSDGEYAVRES-S-SKIKIFSKNFQEKRS---------VRPTFS 430 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~-~-~~v~v~~~~~~~~~~---------~~~~~s 430 (915)
.+.+ ||++..|+....++ ....+..|++..|.|..++.++ | =.|+||+++...... ....|+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 9888 99999999887653 2234557888888899988888 4 469999966433222 222689
Q ss_pred cceeecCcEEEEeeCC-eEEEEeccC-CcEEEEEe--ccccEEEEcCCCCEEEEEeCCeEEEEEe
Q 002502 431 AERIYGGTLLAMCSND-FICFYDWAE-CRLIRRID--VTVKNLYWADSGDLVAIASDTSFYILKY 491 (915)
Q Consensus 431 ~~~i~~g~~La~~~~~-~i~~~d~~~-~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~~ 491 (915)
|+ +.+|++++-| +|++||+=. ...+.+++ ..+..+.|.|||+.||+++-++.+-+|-
T Consensus 488 ~~----~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 488 PD----GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred cc----cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 98 9999999999 999999843 33444444 5889999999999999999886665553
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=323.82 Aligned_cols=463 Identities=15% Similarity=0.265 Sum_probs=373.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.....+++++.+||+..|+++...+.+++|.+++++.++..+. |++||..++|+|.|..+++|+.||.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456799999999999999999999999999999999999987 999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEcCCCCE--EEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002502 92 VKVFEAHTDYIRCVAVHPTLPY--VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
.+.|++|++.|.++.|+|+-.+ |++|..|+++++||+.+...+...+..|.+.|+++.+.+ ++..+++++.|..+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEE
Confidence 9999999999999999997654 789999999999999987677788889999999999999 8999999999999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeC---CCcCEEEEEECCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEE
Q 002502 170 WNLGSPDPNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIII 245 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~ 245 (915)
||+.+-+...++. -...+-++.+-++ +.+.++++.+.+|.+++||..+++++...... ...+..+...+....++
T Consensus 219 wd~~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 219 WDLVQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred eehhhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 9997766665554 3445666666665 22348999999999999999988876554433 33366666666555566
Q ss_pred EEEcCCeEEEEeCCCceeeeeeccCCccEEEEEE-ecCCCeEEEEecCCeEEEec----------CCCcceeEEc--CCC
Q 002502 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY-MKSSRRIVIGYDEGTIMVKI----------GREEPVASMD--NSG 312 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-s~~~~~l~~g~~dg~v~i~~----------~~~~~~~~~~--~~g 312 (915)
..+.|..+.+||..+.++...+-+..+.|..++| .|..+++++++..+.++++. ++...+.+++ .+|
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g 377 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG 377 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC
Confidence 6677889999999999999999888889999886 46779999999999999863 4445566666 455
Q ss_pred cEEEEe--ecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEEc-CCcEEEEEeeccc---
Q 002502 313 KIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVCG-DGEYIIYTALAWR--- 385 (915)
Q Consensus 313 ~~~~~~--~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~~-~~~~~i~~~~~~~--- 385 (915)
..+... ++.+.. |.+.++......+.....+...+..++++..|- ++++++ |..+.+|.....+
T Consensus 378 ~llat~sKD~svil---------Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~ 448 (775)
T KOG0319|consen 378 DLLATGSKDKSVIL---------WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA 448 (775)
T ss_pred cEEEEecCCceEEE---------EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence 444442 222332 333334333344444566777888999977664 566555 9999999876622
Q ss_pred -----------ccCccceeEEEEecCCcEEEEec-CCeEEEeccCcc-------eeee-e-ecCcccceeecCcEEEEee
Q 002502 386 -----------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQ-------EKRS-V-RPTFSAERIYGGTLLAMCS 444 (915)
Q Consensus 386 -----------~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~-------~~~~-~-~~~~s~~~i~~g~~La~~~ 444 (915)
..+-..|.+++++|+.+++++++ |.+.+||+++.- +++. + ...|++. .+.|++++
T Consensus 449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~----dq~laT~S 524 (775)
T KOG0319|consen 449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN----DQLLATCS 524 (775)
T ss_pred ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc----cceeEecc
Confidence 11235678999999999999999 899999997622 2221 1 1278888 89999999
Q ss_pred CC-eEEEEeccCCcEEEEEec---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 445 ND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 445 ~~-~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
.| +|++|.+++..++.+++| .|..+.|-.+|+.|++++.++++.+|
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 99 999999999999999996 68888999999999999999999887
No 15
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=3.5e-37 Score=309.88 Aligned_cols=686 Identities=15% Similarity=0.191 Sum_probs=447.9
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEE-EeC-------CCCEE
Q 002502 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAK-FVA-------RKQWV 72 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~s~-------~~~~l 72 (915)
|.++..+.++- .|+..|.|+.|+.+...+.+++ |..+.+|.--+..........+.-|.... .-+ ....+
T Consensus 1 mklk~~~~~k~-r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 1 MKLKTRICKKN-RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred Cccchhhhhcc-ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceE
Confidence 55565555554 6888899999999887665554 66666665444333222222221111111 111 23578
Q ss_pred EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002502 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
+.++.||.+.+.+ +.++....+.+|.+.|.|-.|+|+|.-|++++.||.|++|.-.. .+..++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEECC
Confidence 8999999999988 45677788889999999999999999999999999999998543 45555556677899999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCe
Q 002502 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 232 (915)
+..+.+++.+ +.+.|=.+.....+...+.|.+-|.++.|++..+ ++++|+.|-..++||.. |..+..-..|..+|
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc--ceeecCCceeEEeeccc-CcccccCChhccce
Confidence 5555555543 6677777777777788899999999999999887 89999999999999965 88888888899999
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCC
Q 002502 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (915)
Q Consensus 233 ~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g 312 (915)
++++|.|+ +.++.+|.+ ++|+= ....+.|..++||+||..+++|+..|.+.+--.-+... ...++
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l--~~~n~ 295 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQL--VSGNL 295 (737)
T ss_pred eeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhh--hhccc
Confidence 99999999 677777754 55522 12347899999999999999999999998721111000 01122
Q ss_pred cEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccCccce
Q 002502 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA 392 (915)
Q Consensus 313 ~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~ 392 (915)
+........+.+.++.+... ...+.+-+.+.++-.-.+|++++..++++|....|+....-..
T Consensus 296 ~~t~~~r~~I~vrdV~~~v~-----------------d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidg 358 (737)
T KOG1524|consen 296 KATSKSRKSITVRDVATGVQ-----------------DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDG 358 (737)
T ss_pred eeEeeccceEEeehhhhhHH-----------------HHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEec
Confidence 23333333333333221110 1112223445566666789999999999998887764321000
Q ss_pred e--EEEEecCC-cEEEEecCCeEEEeccCcceeeeeec------Ccccceee-cCcEEEEeeCC---eEEEEec-cCCcE
Q 002502 393 L--EFVWSSDG-EYAVRESSSKIKIFSKNFQEKRSVRP------TFSAERIY-GGTLLAMCSND---FICFYDW-AECRL 458 (915)
Q Consensus 393 ~--~~~~s~dg-~~l~~~~~~~v~v~~~~~~~~~~~~~------~~s~~~i~-~g~~La~~~~~---~i~~~d~-~~~~~ 458 (915)
. ....--.+ ++.......++.+|..+.+.+...+. ..+...+. +...|+...+. .+.+||. .+|+.
T Consensus 359 re~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~ 438 (737)
T KOG1524|consen 359 REDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKR 438 (737)
T ss_pred cccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcc
Confidence 0 00000111 23333333455555433222211111 01111111 35567776544 8889998 77765
Q ss_pred EEE-----EeccccEEEEc----CCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeE
Q 002502 459 IRR-----IDVTVKNLYWA----DSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529 (915)
Q Consensus 459 i~~-----~~~~i~~v~~s----~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~ 529 (915)
... ++..|..++.+ ++.+.|++.+..+-+.+-.- +.+ |.+ +.+..++..+.+.+
T Consensus 439 qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~Itsv-----Krf---------gke---e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 439 QGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSV-----KRF---------GKE---EEIYKIGTMVHTLA 501 (737)
T ss_pred cCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEee-----hhc---------Cch---hhhhhhhhhhhhhh
Confidence 432 12244445444 45567787776665544210 000 111 11123456666777
Q ss_pred Eec--CEEEEEccCC-eEEEEECCEEe-------EEE-----ecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHH
Q 002502 530 WVG--DCFIYNNSSW-RLNYCVGGEVT-------TMF-----HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIE 594 (915)
Q Consensus 530 w~~--~~~i~~~~~~-~l~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 594 (915)
|.+ ++++-..+.. .+.||.+.-.. ++. .+.+...+..| .++.+.+...+|.+.-..+ ..
T Consensus 502 wndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqvtirrsdG~LlpisV----~p 575 (737)
T KOG1524|consen 502 WNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQVTIRRSDGALLPISV----NP 575 (737)
T ss_pred hccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEEEEEeccCceEeeec----cc
Confidence 776 4455444421 23444321110 111 11122233333 3555555555554433222 22
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHH
Q 002502 595 YKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQL 674 (915)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~l 674 (915)
|..-+ + -++.-++|++|.++|+...+..+|..|
T Consensus 576 y~~iL-------------------~----------------------------e~~sssKWeqavRLCrfv~eqTMWAtl 608 (737)
T KOG1524|consen 576 YPEIL-------------------H----------------------------EYLSSSKWEQAVRLCRFVQEQTMWATL 608 (737)
T ss_pred cHHHH-------------------H----------------------------HHhccchHHHHHHHHHhccchHHHHHH
Confidence 22111 0 013456799999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchH
Q 002502 675 GELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPE 754 (915)
Q Consensus 675 a~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~ 754 (915)
|.+|..+.++.++|.+|..+++.+++..+.......+.-.++|+.....|+...|..+++.-|.+.+|+.+-+++..|.+
T Consensus 609 Aa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~R 688 (737)
T KOG1524|consen 609 AAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRR 688 (737)
T ss_pred HHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999999999888777788889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHH
Q 002502 755 AALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAV 808 (915)
Q Consensus 755 A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 808 (915)
|+|++.+|. ..++.+++..+++|+.-+++ +...+|..|...+|+
T Consensus 689 ALEl~~K~K-~~v~~Vl~yR~KyLk~~g~~---------EtdplyL~~~~~~ei 732 (737)
T KOG1524|consen 689 ALELSQKHK-ELVPRVLQYRRKYLKALGRE---------ETDPLYLPLVAKEEI 732 (737)
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHhccc---------ccCchhhhhhhhccc
Confidence 999999997 68889999999998866544 444556555544443
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=295.73 Aligned_cols=294 Identities=21% Similarity=0.347 Sum_probs=259.8
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCC-----CceeEEEEecCCCEEEEEEeCCCCEEEE
Q 002502 1 MPLRLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVA 74 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 74 (915)
|+-.+.+..++.+|++.|+.++..+.++ .+++++.|..+.+|++.. |..++.+++|...|..+..++||++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 5566777889999999999999999854 677888899999998754 6778999999999999999999999999
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002502 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
++.|+.+++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|+..+.......-..+...|.|++|+|..
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999988733332223347899999999943
Q ss_pred -CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeE
Q 002502 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 155 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 233 (915)
..+|++++.|++|++||+++.+....+.+|.+.++.+.++|+|. +.++|+.||.+.+||++.++.+..+. +...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence 67899999999999999999999999999999999999999998 79999999999999999999988887 788999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC---------CccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG---------LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+++|+|+...|+.+. +..|+|||+.++..+.+++.. .....+++|+++|+.|.+|..|+.|++|
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 999999976666655 556999999998877665432 2345679999999999999999999997
No 17
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-38 Score=324.81 Aligned_cols=704 Identities=11% Similarity=0.094 Sum_probs=452.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---------------TMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (915)
......|++|+....++|+|+.||.++|..+.+. ...+++.+|+..|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456899999999999999999999999987653 2346678999999999999999999999999
Q ss_pred CeEEEEECCCCceeEEE--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002502 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (915)
|.|.||-+-.|.....+ ....+.|.+|+|+.+|..|++...||.|.+-.++.++...+.+++.. ...+.|++ |..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~-D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSE-DLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecc-cHH
Confidence 99999998777654333 24567799999999999999999999999999988755555554432 45788999 788
Q ss_pred EEEEEECCCcEEEEECCCCC-------C----ceEEecCCCCeeEEEEEeC------CCcCEEEEEECCCeEEEEECCCC
Q 002502 157 TFASASLDRTIKIWNLGSPD-------P----NFTLDAHQKGVNCVDYFTG------GDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~-------~----~~~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.++.+-.+|.+++||....- + ...+......+..+.|... ++.+.++++..+|.+.+..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888889999999975421 0 0111223344667777643 25668999999999999876554
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcC---------CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
.....+. ....+..+.|+++|..|+++|.+ +.|.+|. .-|+.+.+++.+...|++++|-..|-.++.+-
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 4333333 23678899999999999998864 3577776 45888999999999999999999888887765
Q ss_pred cCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002502 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
|+.+.+-.-++.-.+.......++.....+..
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p----------------------------------------------- 359 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELP----------------------------------------------- 359 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCc-----------------------------------------------
Confidence 45555522222212211111111100000000
Q ss_pred EcCCcEEEEEeeccc--ccCccceeEEEEecCCcEEEEec-CCeEEEeccCcceeeeeecCcccceeecCcEEEEeeCCe
Q 002502 371 CGDGEYIIYTALAWR--NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDF 447 (915)
Q Consensus 371 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~ 447 (915)
.-.+.+|+..... .+......+++++.+--.++... ++.+.-++. .. .++.. -.++.+-+-
T Consensus 360 --~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~-le-------~~~~~----~~l~LCNSI-- 423 (1189)
T KOG2041|consen 360 --QYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYST-LE-------NRSRV----YFLQLCNSI-- 423 (1189)
T ss_pred --ceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhh-hh-------cccce----EEEeeeccc--
Confidence 0123344433321 11122233444443333333333 333332210 00 01110 000000000
Q ss_pred EEEEeccCCcEEEEEeccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhC------CC----CCCccccccc---
Q 002502 448 ICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDS------GK----PVDEQGVEDA--- 514 (915)
Q Consensus 448 i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~--- 514 (915)
|..+..--..|......-+|..++++|.+.+++|.|..+.....+.. +. ..++......
T Consensus 424 --------GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 424 --------GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred --------CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 00000000112222223355677777777777777754433322211 11 1111101111
Q ss_pred -eeEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEeEEEec--ccceEEEEEEeeCCEEEEEecCCceEEEEecc-
Q 002502 515 -FELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHL--DRPMYLLGYLASQSRVYLIDKEFNVMGYTLLL- 590 (915)
Q Consensus 515 -f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~- 590 (915)
...+......|+..+..+.+|+....+|.|+-+..........+ ....|.+.+.++.+|+.++|-.|.+..+.++.
T Consensus 496 s~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d 575 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYD 575 (1189)
T ss_pred cceeeccCCCcceeeeecceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccc
Confidence 11222345778888899999999999999987765555555544 45678899999999999999999888777753
Q ss_pred ---hHHHHHHHHHccCHHHH-------------------------------------------------hhhcCCCCcch
Q 002502 591 ---SLIEYKTLVMRGDLERA-------------------------------------------------NEILPSIPKEH 618 (915)
Q Consensus 591 ---~~~~~~~~~~~~~~~~a-------------------------------------------------~~~l~~i~~~~ 618 (915)
..+..-+..+++|.|+- +.++...+.+.
T Consensus 576 ~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~~pE~pn 655 (1189)
T KOG2041|consen 576 FDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILLTPENPN 655 (1189)
T ss_pred cCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhHhcCcCCCC
Confidence 11221234558899881 11111111111
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc
Q 002502 619 HNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS 698 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~ 698 (915)
.+.+..+..+..+.. .-.+....+++|.+++...++|.+|+.||++|+.+.+++.|+++|.|++||.
T Consensus 656 k~~ii~~~ikslrD~-------------~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~ 722 (1189)
T KOG2041|consen 656 KTCIIEVMIKSLRDV-------------MNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA 722 (1189)
T ss_pred cceEEEEEehhhhhH-------------HHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc
Confidence 111111111111111 1235667799999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhh
Q 002502 699 GLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL 778 (915)
Q Consensus 699 ~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L 778 (915)
|+.+ |++|..+..+ -.....+..+.|+|+||+++|++++|.+.|++|+.+++.+. +++++.+..-
T Consensus 723 Gik~----------vkrl~~i~s~---~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwf--rV~qL~r~g~ 787 (1189)
T KOG2041|consen 723 GIKL----------VKRLRTIHSK---EQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWF--RVYQLIRNGG 787 (1189)
T ss_pred chhH----------HHHhhhhhhH---HHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHH--HHHHHHHccC
Confidence 9888 6666666544 23334455578999999999999999999999999998754 7777777633
Q ss_pred hhcC-hhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCccc
Q 002502 779 QKVN-PKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (915)
Q Consensus 779 ~~~~-~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (915)
.... +-+-.+..+.+++ |.+..++.++.++|.........+++|
T Consensus 788 ~d~dD~~~e~A~r~ig~~---fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 788 SDDDDEGKEDAFRNIGET---FAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred CCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 2222 2233344444555 888899999999998888777777776
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-36 Score=306.09 Aligned_cols=625 Identities=20% Similarity=0.264 Sum_probs=400.1
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+..+...|.++.|+|...+++++-.+|.|.|||++|...++.+.-..-+|++..|-+..+.+++|++|+.|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34455888999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
. .....+..|...|.+++.+| ...+++++|.|-+|++||.... .+.+++.+|...|.+++|+|...+ .+++++-|+
T Consensus 87 ~-ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFaS~sLDr 163 (794)
T KOG0276|consen 87 G-EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFASASLDR 163 (794)
T ss_pred c-eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ceeeeeccc
Confidence 8 77889999999999999999 7789999999999999998764 466789999999999999998665 899999999
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCC--CEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEE
Q 002502 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 287 (915)
+|++|.+.+..+..++++|...|.|+++-+.| ++|++|+.|..|+|||..|..+++++.+|...|..++|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998855 7999999999999999999999999999999999999999999999
Q ss_pred EEecCCeEEEecCCCcc-----------eeEE---cCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002502 288 IGYDEGTIMVKIGREEP-----------VASM---DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~-----------~~~~---~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
+|+.||++++|....-. ++++ ..++++..-.+....++++ |+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l-----------gr------------- 299 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL-----------GR------------- 299 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc-----------cC-------------
Confidence 99999999999543221 2221 1222222222222222211 11
Q ss_pred cCCceEEECCCCCEEEEEcCC--cEEEEEeecc-----------cccCccce----eEEEEecCCcEEEEecCCeEEEec
Q 002502 354 LYPQSLKHNPNGRFVVVCGDG--EYIIYTALAW-----------RNRSFGSA----LEFVWSSDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~~~--~~~i~~~~~~-----------~~~~~~~~----~~~~~s~dg~~l~~~~~~~v~v~~ 416 (915)
....+..+++|+.+-...+. .+.+..+... ..+..|.+ ..++-||+|+++++..+|.-.||.
T Consensus 300 -eeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 300 -EEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred -CCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 11245555566544332211 1111111111 11222322 467789999999999999988885
Q ss_pred ------cCcceeeeeecCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEeccccEEEEcCCCCEEEEEeCCeEEEE
Q 002502 417 ------KNFQEKRSVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 417 ------~~~~~~~~~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (915)
+.+..-..+ .|+++ ..-.|+..++ .|.++ ...+..+.+...-. ...--.|.+|...+.+.++++
T Consensus 379 ala~RnK~fG~~~eF--vw~~d----sne~avRes~~~vki~--knfke~ksi~~~~~-~e~i~gg~Llg~~ss~~~~fy 449 (794)
T KOG0276|consen 379 ALALRNKAFGSGLEF--VWAAD----SNEFAVRESNGNVKIF--KNFKEHKSIRPDMS-AEGIFGGPLLGVRSSDFLCFY 449 (794)
T ss_pred eeehhhcccccceeE--EEcCC----CCeEEEEecCCceEEE--ecceeccccccccc-eeeecCCceEEEEeCCeEEEE
Confidence 112211222 34454 4566666544 77777 56666555543221 222345778888888988887
Q ss_pred EecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecC-EE-EEEccCC-eEEEEE---------CCEEeE---
Q 002502 490 KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGD-CF-IYNNSSW-RLNYCV---------GGEVTT--- 554 (915)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~-~~-i~~~~~~-~l~~~~---------~~~~~~--- 554 (915)
+... -..+..++...+...|.++ .| ...++.. -+.-+. ++....
T Consensus 450 dW~~---------------------~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~~a~e~g~~v~eeG 508 (794)
T KOG0276|consen 450 DWES---------------------GELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVANAVEQGIEVTEEG 508 (794)
T ss_pred Eccc---------------------ceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHHHHHHhcCCCCcchh
Confidence 5321 1334455666677778864 22 2222222 011010 000000
Q ss_pred -------EEecccceE-------EEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCH-HHHhhhcCCCCcchH
Q 002502 555 -------MFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDL-ERANEILPSIPKEHH 619 (915)
Q Consensus 555 -------~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~-~~a~~~l~~i~~~~~ 619 (915)
+......+. ..=|....+|+...=-......+.++-......... +++. -.+++-+.-|.-...
T Consensus 509 iedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~-~~~rvYL~Dke~nVi~y~l~ 587 (794)
T KOG0276|consen 509 IEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVA-NDNRVYLHDKELNVISYKIL 587 (794)
T ss_pred HHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeee-cCCEEEEeecccceEeEeee
Confidence 000000000 000111223332221222233333332211111000 0000 000000000000000
Q ss_pred HHHHHH--HHhCCChhhhhhcc----cCcccee-eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHH
Q 002502 620 NSVARF--LESRGMIEEAIEVA----TDPDYRF-ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMK 692 (915)
Q Consensus 620 ~~~~~~--~~~~~~~~~al~~~----~~~~~~f-~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~ 692 (915)
-.+.+| +.-.+..+.|..+. ++...+. .+.-.+|..++|++++...+ +-=+.|++.|++++|
T Consensus 588 l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d------~rFelal~lgrl~iA----- 656 (794)
T KOG0276|consen 588 LEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPD------QRFELALKLGRLDIA----- 656 (794)
T ss_pred hHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChh------hhhhhhhhcCcHHHH-----
Confidence 011111 11123333333321 1111111 22235667777777764322 122467788888888
Q ss_pred HcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002502 693 QAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (915)
Q Consensus 693 ~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (915)
..|.....+..+++.|++.+...++..+|.+|+....|+..-.=++..+|.-+
T Consensus 657 --------~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 657 --------FDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred --------HHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 66677777777789999999999999999999988888877777777777544
No 19
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-39 Score=317.30 Aligned_cols=282 Identities=23% Similarity=0.376 Sum_probs=257.8
Q ss_pred ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCc
Q 002502 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 55 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
+...||..+.|+++++.|+||+.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..|++|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 45679999999999999999999999999999999999999999999999999997 568999999999999999987
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEE
Q 002502 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.....+.+|...|..++|+| +|.+|++++.|.+-++||+.++.......+|..+|.+++|.++|. ++++|+.|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc--eeeccCccchhh
Confidence 77888999999999999999 999999999999999999999998888899999999999999998 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEec-CCCeEEEEec
Q 002502 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~-~~~~l~~g~~ 291 (915)
|||+++|+++..+.+|..+|.++.|+|+|..|+|||.|++++|||++..+.+.++..|..-|..+.|+| .|.+|++++.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred CCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002502 292 EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 292 dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
|+++.+|..... + .++.+..++..|-++.+++||++++++
T Consensus 409 D~t~kiWs~~~~------------------------------------~----~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 409 DNTVKIWSTRTW------------------------------------S----PLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred CcceeeecCCCc------------------------------------c----cchhhcCCccceEEEEeccCCceEEEe
Confidence 999999853322 1 123346677777788888888888877
Q ss_pred c-CCcEEEEE
Q 002502 372 G-DGEYIIYT 380 (915)
Q Consensus 372 ~-~~~~~i~~ 380 (915)
+ |..+.+|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 7 77777773
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.5e-37 Score=321.17 Aligned_cols=473 Identities=15% Similarity=0.182 Sum_probs=367.1
Q ss_pred hhhhhccc-CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEE
Q 002502 6 EIKRKLAQ-RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (915)
Q Consensus 6 ~~~~~l~~-h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~ 82 (915)
.+.+.++. |++||.-++|+|.+..|++|+.||.|+|||+..+.+.+.|++|++.|.++.|+|+-+ .|++|..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 55677777 999999999999999999999999999999999999999999999999999999754 488999999999
Q ss_pred EEECCCCce-eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC-----CC
Q 002502 83 VYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD-----TN 156 (915)
Q Consensus 83 vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~-----~~ 156 (915)
+||+++... +..+..|.+.|++++|++++..+++++.|..+.+||+.+. +...++.- ...+-++.+-+ + +.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~-~~l~~lp~-ye~~E~vv~l~-~~~~~~~~ 251 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY-KKLKTLPL-YESLESVVRLR-EELGGKGE 251 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh-hhhheech-hhheeeEEEec-hhcCCcce
Confidence 999996555 7778899999999999999999999999999999999654 34444332 23466666666 3 56
Q ss_pred EEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEE
Q 002502 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 235 (915)
++.+.+.+|.+++||..+++........ ...+..+...+... .++....+..+.++|.++.+....+-|....|..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~--~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS--QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC--ceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 9999999999999999988766544322 22255555555544 37777788899999999999999999999999999
Q ss_pred EEe-CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecC--------------
Q 002502 236 CFH-PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG-------------- 300 (915)
Q Consensus 236 ~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~-------------- 300 (915)
+|- |+.+++++++..+.+|+|+..+..+. .+.+|...|.++....+|-+|++|+.|.++++|-.
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 875 57789999999999999998876665 78899999999997778899999999999999932
Q ss_pred -CCcce--eEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeee-eecCCcccCCceEEECCCCCEEEEEc-CCc
Q 002502 301 -REEPV--ASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCG-DGE 375 (915)
Q Consensus 301 -~~~~~--~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~-~~~ 375 (915)
+...+ +++...+--++.....-.++.++..... -.+...+.+.. .....|+-.+.+++++|+.+++|+|+ |.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s--~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS--KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCc--ccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 11111 2223333333443333344444433220 00111111111 11245677899999999999999999 899
Q ss_pred EEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-CCeEEEeccC-------cceeee--eecCcccceeecCcEE
Q 002502 376 YIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN-------FQEKRS--VRPTFSAERIYGGTLL 440 (915)
Q Consensus 376 ~~i~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~-------~~~~~~--~~~~~s~~~i~~g~~L 440 (915)
..||+....+ ..+...+.++.|++..+.+++.+ |.+|+||.++ +.++.. ++..|-.+ |..|
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~ql 562 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQL 562 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEE
Confidence 9999887543 22445689999999999999988 8999999854 222221 23355554 7777
Q ss_pred EEeeCC-eEEEEeccCCcEEEEEec---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 441 AMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 441 a~~~~~-~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
+++..+ -+++|++.++.++..++. .|+.+.-++.+.++++++.|+.+++|
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 777776 999999999999998874 89999999999999999999999887
No 21
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=315.02 Aligned_cols=663 Identities=19% Similarity=0.312 Sum_probs=404.2
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
.+...|..|.++|+.++|||+++++++|+.|-.|+||++++.+++.++.+|-.-|+.+.|++.-.||+++|+|.+|+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------------------------ceEEEE
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------WMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~ 137 (915)
+.+++++..+.+|...|.|..|+|....++++|-|.+|++||+..- .....+
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999998531 234567
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
+.+|...|.-++|+| .-.++++|+.|+.|++|.++..+. +-+..+|...|.++-|+|..+ ++++.+.|++|++||
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEe
Confidence 889999999999999 788999999999999999865442 345678999999999998766 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC------CccEEEEEEecCCCeEEEE
Q 002502 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG------LERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~------~~~v~~i~~s~~~~~l~~g 289 (915)
+...+.+++++......+.++-+|..+++++|. |+-+.+|.+..-++...+... ...+....+..... .++.
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d-~~v~ 356 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD-TAVA 356 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc-ceeE
Confidence 999999999988888999999999999887765 555667766533322222111 12233333322111 1111
Q ss_pred ecCCeEEEecCCCcceeEEcCC-CcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002502 290 YDEGTIMVKIGREEPVASMDNS-GKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (915)
Q Consensus 290 ~~dg~v~i~~~~~~~~~~~~~~-g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (915)
.-.+.-..| .....+++++. +.++..++.....+.+-..... .+|..-. ++. ........+-...+ ++.
T Consensus 357 ~lr~~g~~~--~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~---~~~~~~~---~~~-~k~tG~~a~fvarN-rfa 426 (1202)
T KOG0292|consen 357 SLRRPGTLW--QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD---SDGVSDG---KDV-KKGTGEGALFVARN-RFA 426 (1202)
T ss_pred eccCCCccc--CCcceeeeccccCeEEEEeccCCCeEEEEEecCc---ccccCCc---hhh-hcCCCCceEEEEec-ceE
Confidence 100000000 01111222221 1122221111111111111000 0010000 000 00000111111111 222
Q ss_pred EEEc-CCcEEEEEeeccccc---CccceeEEEEecCCcEEEEecCCeEEEeccCcceee-eeec------CcccceeecC
Q 002502 369 VVCG-DGEYIIYTALAWRNR---SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKR-SVRP------TFSAERIYGG 437 (915)
Q Consensus 369 av~~-~~~~~i~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~v~v~~~~~~~~~-~~~~------~~s~~~i~~g 437 (915)
+.-. +.++.+-+......+ ....+..+-+...|.+++. +...|.+||++.+... ++.. .+|.+ .
T Consensus 427 vl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~~s~vkyvvws~d----m 501 (1202)
T KOG0292|consen 427 VLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSND----M 501 (1202)
T ss_pred EEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE-cCCeEEEEEeecceEEEEEecCceeEEEEcCc----c
Confidence 2222 222222222211111 1123344555555655544 3456888886644322 2221 45666 7
Q ss_pred cEEEEeeCCeEEEEeccCCcEEEEEe--ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccce
Q 002502 438 TLLAMCSNDFICFYDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 438 ~~La~~~~~~i~~~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 515 (915)
.++|.-+..+|.+++.. -+.+..+. .+|++-+|..+|-++-+..+.-.|- +.+ ++.|..+..
T Consensus 502 ~~vAll~Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~nHikYa-----------l~~----GD~GIikTL 565 (1202)
T KOG0292|consen 502 SRVALLSKHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKYA-----------LEN----GDSGIIKTL 565 (1202)
T ss_pred chhhhcccceEEEEecc-hhheecchheeEeeeceeccCceEEEEehhhhhhh-----------hcc----CCcceEEec
Confidence 78888788888888843 44555544 4788899999887766655442222 111 122222221
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEECCEEe-EEEecccceEEEEE-------------EeeCC-----EE-E
Q 002502 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVT-TMFHLDRPMYLLGY-------------LASQS-----RV-Y 575 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~-----~l-~ 575 (915)
.. .+.+..-. +...||.+.+.. .+.+.+...|..++ +.+.+ -+ |
T Consensus 566 d~---------------~iyitkv~-gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaY 629 (1202)
T KOG0292|consen 566 DK---------------PIYITKVK-GNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAY 629 (1202)
T ss_pred cc---------------ceEEEEee-CCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHH
Confidence 11 11222222 333344322111 11112211111000 00000 00 0
Q ss_pred EEecCCce-EEEE-ecchHHHHHHHHHccCHHHHhhhcCCCCcchH-HHHHHHHHhCCChhhhhhcccCccceeeeeccc
Q 002502 576 LIDKEFNV-MGYT-LLLSLIEYKTLVMRGDLERANEILPSIPKEHH-NSVARFLESRGMIEEAIEVATDPDYRFELAIQL 652 (915)
Q Consensus 576 ~~d~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l 652 (915)
+. ++|-. +... +.-.-.+|..+++.|+++.|.+..+++....+ .++ =+-||..
T Consensus 630 Lq-KkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rL-----------------------ge~Al~q 685 (1202)
T KOG0292|consen 630 LQ-KKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERL-----------------------GEEALRQ 685 (1202)
T ss_pred HH-hcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHH-----------------------HHHHHHh
Confidence 00 11100 0000 01122344455555555554444333322222 111 1334566
Q ss_pred CCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHH
Q 002502 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVA 729 (915)
Q Consensus 653 ~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a 729 (915)
|+-+.|.-+.++. .-|..|.-.++-.|+.+.-.++...+ +|..+......-+|| +++..++....|...+|
T Consensus 686 gn~~IaEm~yQ~~---knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~d---v~ervkIl~n~g~~~la 759 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRT---KNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGD---VKERVKILENGGQLPLA 759 (1202)
T ss_pred cchHHHHHHHHHh---hhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhcc---HHHHHHHHHhcCcccHH
Confidence 6766666655543 45788888888888888888887766 477776777777898 88899999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHCC
Q 002502 730 FLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~ 750 (915)
...+.-.|.-++|.++....+
T Consensus 760 ylta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 760 YLTAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHhhcCcHHHHHHHHHhhc
Confidence 999999999899998888766
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.6e-37 Score=306.11 Aligned_cols=322 Identities=22% Similarity=0.325 Sum_probs=278.5
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCC----ceeEEEE----------ecCCCEEEEEEeCCCCEEEEEeC
Q 002502 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQ----TMAKSFE----------VTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~----~~~~~~~----------~~~~~v~~~~~s~~~~~l~~g~~ 77 (915)
.|..+|.+++|+|-.. .+++|+.+...++|++... .....++ ..+..|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3999999999999766 8999999999999998741 1100111 12357999999999999999999
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCE
Q 002502 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
||.+++|+. +|..+.++..|.++|.++.|+..|.||++++.||++.+||..++ ...+.+.-|..+-..+.|- +...
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~--~~~~ 331 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ--SNDE 331 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe--cCce
Confidence 999999996 47888999999999999999999999999999999999999998 7888888898887889998 5789
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002502 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 237 (915)
|++++.|+.|+++.+....|..++.+|.++|+++.|.|.+. +|+++++|++++||+.....+...+..|...|..+.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 99999999999999999999999999999999999999888 8999999999999999888899999999999999999
Q ss_pred eCCCC---------EEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEE
Q 002502 238 HPELP---------IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 238 ~~~~~---------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~ 308 (915)
+|.|+ .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.||.|.+|..+...++.-
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 99764 789999999999999999999999999999999999999999999999999999985544433221
Q ss_pred cCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002502 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.. ....+..+.|+.+|..|.++. ++.+.+.++
T Consensus 490 ~~-----------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 YQ-----------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ec-----------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 11 111345788888888777665 777666543
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=284.54 Aligned_cols=285 Identities=22% Similarity=0.347 Sum_probs=255.8
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+++++|.+.|.++.|++|+++|++++.||.+.|||.-|..+++.++.....|...+|+|.|++++.|+-|....||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 78899999999999999999999999999999999999999999998899999999999999999999999999999984
Q ss_pred C--c---eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEe-CCCcCEEEE
Q 002502 131 G--W---MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-GGDKPYLIT 204 (915)
Q Consensus 131 ~--~---~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~ 204 (915)
. . ...+.+.+|.+++.++.|.+ .+.|++++.|.+..+||+.+++.+..+.+|.+.|.+++++| +++ .+++
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n--tFvS 204 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN--TFVS 204 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC--eEEe
Confidence 3 1 45667899999999999985 67899999999999999999999999999999999999999 444 8999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC--CccEEEEEEecC
Q 002502 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKS 282 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~s~~ 282 (915)
|+.|+..++||++.+.++++|.+|...|.+++|+|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||..
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999888777643 457999999999
Q ss_pred CCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002502 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
|++|.+|+.|..+.+|..- .++++. .+..|+..|+++..+
T Consensus 285 GRlLfagy~d~~c~vWDtl------------------------------------k~e~vg----~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTL------------------------------------KGERVG----VLAGHENRVSCLGVS 324 (343)
T ss_pred ccEEEeeecCCceeEeecc------------------------------------ccceEE----EeeccCCeeEEEEEC
Confidence 9999999999999997321 122111 235677788899999
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002502 363 PNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (915)
|||.-|++++ |..+.||
T Consensus 325 ~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 325 PDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCCcEEEecchhHheeec
Confidence 9998888887 8888877
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.3e-37 Score=304.40 Aligned_cols=277 Identities=24% Similarity=0.361 Sum_probs=259.3
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
..|++++|+.+|..||+|..+|.++||+ .+|.++.++..|++||.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 678889999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002502 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
.-|..+-..+.|-.+. .+++++.||.|+++.+... .+..++.+|.+.|.++.|+| .+.+|++++.|+++++|+....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCC
Confidence 9999887888997654 6899999999999999877 77888888999999999999 8999999999999999999888
Q ss_pred CCceEEecCCCCeeEEEEEeCCC-------cCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002502 176 DPNFTLDAHQKGVNCVDYFTGGD-------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 248 (915)
.....+..|...|..+.|+|.+. +..+++++.|++|++||+..+.++.++..|..+|.+++|+|+|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88889999999999999999763 33789999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
.||.|.+|+.+++++.+++... +.|..++|+.+|..|.++..||.+.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999999876 66999999999999999999998876
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-37 Score=297.70 Aligned_cols=294 Identities=27% Similarity=0.451 Sum_probs=277.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
++.+...+.+|..+|+.+-|+|+...+++++.|++|++||+.++++...+++|...|..++|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 84 YNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ .+..++.+|...|..+..+. |+.++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 99986 5677888899999999999999999999999999999999999 78899999999999999998 999999999
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-------------CcCEEEEEECCCeEEEEECCCCcEEEEecCCc
Q 002502 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-------------DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (915)
.|.+|++|-+.++++...+..|+.+|-|++|.|.. ..+++.+++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999998888999999999999998842 12489999999999999999999999999999
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 230 ~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
..|..++|+|.|++|+++..|+++++||++++++..++..|..-++++.|..+..++++|+-|..+.+|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=303.30 Aligned_cols=281 Identities=27% Similarity=0.475 Sum_probs=252.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
.+|..+.|.|+|+.|++|++.|.+.+|+..+-.....+..|+.+|+++.|+++|.++++|+.+|.|++|+.+ ...++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 478999999999999999999999999975554445567899999999999999999999999999999976 4556666
Q ss_pred ecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002502 96 EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
.+|. ..|++++|+|+...++++++||+|+|||.... .....+.+|.-.|.++.|+| ....+++++.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence 6555 89999999999999999999999999999877 55667799999999999999 788999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeE
Q 002502 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v 253 (915)
+.++.++..|+..|..+.|+++++ +|++++.|..++++|+++.+.++.+++|...|+++.|+|-. .++.+|+.||.|
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999985 99999999999999999999999999999999999999944 588899999999
Q ss_pred EEEeCCCceeeeee-ccCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 254 RIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 254 ~iwd~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
..|.+...+++..+ ..|...||+++|+|-|..|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998855544444 4577899999999999999999999999999643
No 27
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7e-35 Score=271.28 Aligned_cols=297 Identities=22% Similarity=0.317 Sum_probs=245.3
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC-----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002502 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN-----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~-----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
...++++|++.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.+|...|..+..+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 44578899999999999887 5678889999999999875 46678899999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC--CCCeeEEEEEeCCCcC
Q 002502 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKP 200 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~ 200 (915)
+++||+.++ +..+.|.+|...|++++|+| ++..+++|+.|++|++|+..+. +..++..+ ..-|.|++|+|+...+
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999 88899999999999999999 8999999999999999998654 44444333 6789999999998888
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEe
Q 002502 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s 280 (915)
+|++++.|++|++||+++.+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+.++... ..|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-CeEeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998877644 889999999
Q ss_pred cCCCeEEEEecCCeEEEecCCCcc-eeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceE
Q 002502 281 KSSRRIVIGYDEGTIMVKIGREEP-VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL 359 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~-~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 359 (915)
|+...|+.+...+ |+||...... +..+..++.-. .. ......-.++
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~-------------------s~-------------~~~~~~clsl 289 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGP-------------------SS-------------KAGDPICLSL 289 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhhhhhcccccccc-------------------cc-------------ccCCcEEEEE
Confidence 9988888887766 6665332221 11111110000 00 1111122467
Q ss_pred EECCCCCEEEEEc-CCcEEEEEee
Q 002502 360 KHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 360 ~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
+||+||+.|..+. ++.+.+|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 8999998887775 8888888653
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=285.92 Aligned_cols=289 Identities=19% Similarity=0.411 Sum_probs=265.4
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
.++.+.+.+|.+-|+|+++.|-..|+++|+.|++|.|||+.+|++..++.+|-..|+.+++|+...++++++.|++|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
|+...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++. .....+.+|..+|.++.+.| -+..+++|+.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQP-TDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeec-CCCceEEecCC
Confidence 99999999999999999999999999999999999999999999997 77889999999999999999 56689999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 244 (915)
++|++||++.++...++..|...|.+++.+|... .+++++.| .|+-|++..|..+..+.+|...|.+++...|+ ++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~--~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~ 374 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN--LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VL 374 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchh--hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eE
Confidence 9999999999999999999999999999999875 56666655 69999999999999999999999999999886 78
Q ss_pred EEEEcCCeEEEEeCCCceeeeeec---c-----CCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLN---Y-----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~---~-----~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
++|+.+|.+.+||.++|-..+... . ....|.+.+|...|..|++|..|.+|.+|.
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 899999999999998876544332 1 124689999999999999999999999974
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.7e-34 Score=261.61 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=239.8
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce--eEEEecCCCCEEEE
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l 105 (915)
-+|+++++|.+|++|...+|.+..+++..++.|+.+...|+++.||+++. ..|++||+++++. +.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999999999999999988999999999999999999875 5799999998764 78899999999999
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecC
Q 002502 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAH 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~ 184 (915)
.|..+|+.+++|++||+++|||++.. .+.+.+. |..+|.++..+| +...|++|..+|.|++||+........+ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999985 5555554 779999999999 8889999999999999999887655444 345
Q ss_pred CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
...|.++...|+|. +++.+...|..++|++-++ .++..++.|.+.+..+.+||++++|+++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 57889999999998 7999999999999998653 356778889999999999999999999999999999999
Q ss_pred CCc-eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 259 TTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 259 ~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
.+. +....+..|...+|.++||.+|.+|++|+.|+.+++|...
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 888 7778888898999999999999999999999999998543
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=270.05 Aligned_cols=286 Identities=22% Similarity=0.377 Sum_probs=255.0
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC-CCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
+...+.+|.+.|..+.|+|+|++||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345678999999999999999999999999999999943 3455667889999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
.++|+.+..++.|.+.++.+.-+.-|. .+.+++.||++++||+++. ...+++. ..-.++++.|.. .+..+.+|+-|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggId 195 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGID 195 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeecccc
Confidence 999999999999999999998665565 4568899999999999976 4555543 345689999997 78899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC----CcEEEEecCCcc----CeEEEE
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTH----NVSAVC 236 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~v~~v~ 236 (915)
+.|++||++.+....++.+|..+|+.+..++.|. ++.+-+.|.++++||++. .+++..+.+|.. .....+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCC--ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999999999999999999999999998 799999999999999975 345777777644 456789
Q ss_pred EeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
|+|++..+.+|+.|..+++||....+.+..+.+|.+.|.++.|+|...+|.+++.|.++.+
T Consensus 274 wsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 274 WSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999998888899999999999999999999999999999999876
No 31
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.4e-35 Score=308.77 Aligned_cols=242 Identities=23% Similarity=0.481 Sum_probs=229.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------------------------------ceeEEEEecCCCEEEE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------------------------------TMAKSFEVTELPVRSA 63 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~ 63 (915)
...++|..|++|+..||.|..|..|++|.+... ...+++.+|.+||..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 457999999999999999999999999987631 1335577899999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCc
Q 002502 64 KFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143 (915)
Q Consensus 64 ~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 143 (915)
.|+|+.++|++++.|+++++|.+.+...+..+++|..+|+.+.|+|.|-|++++|.|++-++|..+.. .+.+++.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 78899999999
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE
Q 002502 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
.|.|+.|+| +.+++++||.|.+|++||..++..++.+.+|.++|.+++|+|.|. +|++|+.||.|.+||+.+++.+.
T Consensus 537 DV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 537 DVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcchh
Confidence 999999999 999999999999999999999999999999999999999999887 99999999999999999999999
Q ss_pred EecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 224 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+.+|.+.|.++.|+.+|..|++||.|.+|++||+..
T Consensus 614 ~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999764
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=261.41 Aligned_cols=287 Identities=23% Similarity=0.374 Sum_probs=243.7
Q ss_pred chhhhhhcccCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCC---ceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQ---TMAKSF-EVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~-~~~la~~~~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~d 78 (915)
++...+++.+|.+++..++|||- |..||+++.|..|+||+...+ .+...+ .+|+..|++++|+|.|++|++++.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 35567889999999999999998 889999999999999998743 233333 2589999999999999999999999
Q ss_pred CeEEEEECCC--CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCC
Q 002502 79 MFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 79 g~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
.++.||.-.. .+++.++++|...|.|++|+++|.+||+|+.|..|.||.+. ....+..++..|...|..+.|+| .
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-T 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-C
Confidence 9999997654 36788899999999999999999999999999999999988 34567888999999999999999 8
Q ss_pred CCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccC
Q 002502 155 TNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 231 (915)
..+|++++.|.+|++|+-.. -.+..++.+|...|.+++|.+.|. .|+++++|++++||...+.-. ..|...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~~~~~----~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLYTDLS----GMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeeccCcc----hhcccc
Confidence 89999999999999998652 246788999999999999999987 599999999999998663211 236778
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCc------eee-eeeccCCccEEEEEEecC-CCeEEEEecCCeEEEec
Q 002502 232 VSAVCFHPELPIIITGSEDGTVRIWHATTY------RLE-NTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 232 v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~-~~~~~~~~~v~~i~~s~~-~~~l~~g~~dg~v~i~~ 299 (915)
+..+.|. + ..|++++.|+.|++|.-... +++ ..-..|...|+++.|.|. .++|++|++||.+.+|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999999 4 47999999999999975532 111 123456678999999995 78999999999999984
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-33 Score=294.87 Aligned_cols=287 Identities=32% Similarity=0.558 Sum_probs=264.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.+++.+|.++|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45778999999999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+++.+..+..|...|.++.|+++++++++++.+|.|.+||+.++ .....+..|...+.++.|+| ++.++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888889999999999999999888888888999999999976 56666778888999999999 67888888879999
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002502 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 247 (915)
++||+++++....+..+...+.++.|+|++. .+++++.++.|++||+++++.+..+..|...+.++.|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999998888888888888999999999886 68888889999999999999988887888899999999998888888
Q ss_pred EcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+.+|.|++|++.+++....+..+...+.+++|+|+++.+++++.||.+.+|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999999988888888899999999999999999999999987
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=271.78 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=278.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
...|..|++.|.+++.+|+.+++++|+.|..-.||++.+|.....+.+|+..|+++.|+.+|.+||+|+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
++.....+...-+.|.-+.|+|.+..|+.|+.||.+.+|.+.++ ...+++.+|+.++++-.|.| ++..++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 99988888766778999999999999999999999999999987 67889999999999999999 89999999999999
Q ss_pred EEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC--------CccC---eEEE
Q 002502 168 KIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--------HTHN---VSAV 235 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~---v~~v 235 (915)
++|++.++.+...+... .....++.++..+. .++.|+.++.+++-+..+|+.+....+ +... |-++
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~--~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGS--TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccc--eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999999998887632 34567888877776 788999999999999888887776652 3333 4455
Q ss_pred EEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEE
Q 002502 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (915)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~ 315 (915)
.++..-++.|+|+-||+|.|||+...++..... |...|..+.|.+ ..+|++++.+|.|+.|..+... ..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~---------l~ 361 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ---------LK 361 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccc---------eE
Confidence 566677899999999999999998776655554 457799999999 7899999999999997543321 11
Q ss_pred EEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002502 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.....|...|..++++|+++++++.+ |+...+|..
T Consensus 362 -------------------------------~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 -------------------------------FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred -------------------------------EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 11234556777888889888888777 777777754
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=286.45 Aligned_cols=396 Identities=16% Similarity=0.256 Sum_probs=320.6
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
.+.-++.||..+|+++.|+..|.+||+|+.|+.|.+||+-...-...+.+|+..|+.+-|..+.+++++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 34567889999999999999999999999999999999988888888999999999999999899999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----------------------------------
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------------------- 131 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------------------- 131 (915)
+.+..+..+.-.|.+.|+.+++++ +.+++++.|+.+++|++...
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred cccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 999999999999999999999997 68999999999999998110
Q ss_pred ------------------------------------------------------------------------------ce
Q 002502 132 ------------------------------------------------------------------------------WM 133 (915)
Q Consensus 132 ------------------------------------------------------------------------------~~ 133 (915)
..
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence 00
Q ss_pred -----------------------------EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC
Q 002502 134 -----------------------------CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 134 -----------------------------~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 184 (915)
-.-.+.+|...|.+++++. .+.++..+..++|++|+..+.++++++...
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sga~~SikiWn~~t~kciRTi~~~ 413 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASGAGESIKIWNRDTLKCIRTITCG 413 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--CceeeeecCCCcEEEEEccCcceeEEeccc
Confidence 0011346777888889885 444555555789999999999999998754
Q ss_pred CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC----
Q 002502 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT---- 260 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~---- 260 (915)
.+.+..|.|.+. ++++|...|.+.+||+.+...+.+++.|.+.|++++.+||+..+++||.|.+|++||..-
T Consensus 414 --y~l~~~Fvpgd~--~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 414 --YILASKFVPGDR--YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred --cEEEEEecCCCc--eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 788899998877 899999999999999999999999999999999999999999999999999999999531
Q ss_pred -ceee--------eeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecc
Q 002502 261 -YRLE--------NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (915)
Q Consensus 261 -~~~~--------~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 331 (915)
+... .++.. ...|.|+.+||||++|+++--|.++.++.... -+.+
T Consensus 490 ~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---------lKFf---------------- 543 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---------LKFF---------------- 543 (888)
T ss_pred CcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecc---------eeee----------------
Confidence 1111 12222 36789999999999999999999998841110 0000
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc-----cCccceeEEEEecCCcEEE
Q 002502 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN-----RSFGSALEFVWSSDGEYAV 405 (915)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~s~dg~~l~ 405 (915)
-.+-.|..++.++.+|||++.+++|+ |.++.+|-..-+.- .+..++.++.|-|...++.
T Consensus 544 ---------------lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF 608 (888)
T KOG0306|consen 544 ---------------LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF 608 (888)
T ss_pred ---------------eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence 01345677899999999999999999 99999996654431 2335789999999887666
Q ss_pred Eec-CCeEEEeccC-cc------eee-eeec-CcccceeecCcEEEEeeCC-eEEEEecc
Q 002502 406 RES-SSKIKIFSKN-FQ------EKR-SVRP-TFSAERIYGGTLLAMCSND-FICFYDWA 454 (915)
Q Consensus 406 ~~~-~~~v~v~~~~-~~------~~~-~~~~-~~s~~~i~~g~~La~~~~~-~i~~~d~~ 454 (915)
+.+ |+.|+-||-. |. ++. .++. +.+|+ |.++++++.| .|++|.-.
T Consensus 609 t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~----G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN----GSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EecCcceEEeechhhhhhheeeccchheeeeeEEcCC----CCeEEeccCCceeEeeecc
Confidence 665 9999999832 22 221 2222 67787 9999999998 99999843
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=286.08 Aligned_cols=283 Identities=23% Similarity=0.375 Sum_probs=246.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|.++|+++.|++++.++++|+.+|.|++|+..-. ...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 3458999999999999999999999999998665555566799999999999999999999999999999998765 333
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.....|...|.+++|+| +...|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++|+.|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEccCCceeEeec
Confidence 33344558899999999 888999999999999999999999999999999999999999866 899999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecC-CCeEEEEecCCe
Q 002502 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGT 294 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~g~~dg~ 294 (915)
.++++++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.+++.|...++++.|+|- ..++++|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 567888999999
Q ss_pred EEEecCC-CcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-
Q 002502 295 IMVKIGR-EEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG- 372 (915)
Q Consensus 295 v~i~~~~-~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~- 372 (915)
+..|... ..|+..+ ...++..|.+++|+|=|.+|+.++
T Consensus 331 vvh~~v~~~~p~~~i----------------------------------------~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEI----------------------------------------PPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred eEEEeccccccccCC----------------------------------------CcccccceeeeeccccceeEeecCC
Confidence 9997432 2221111 134566778999999999999988
Q ss_pred CCcEEEEEee
Q 002502 373 DGEYIIYTAL 382 (915)
Q Consensus 373 ~~~~~i~~~~ 382 (915)
|..+.+|...
T Consensus 371 d~t~rfw~r~ 380 (464)
T KOG0284|consen 371 DRTVRFWTRN 380 (464)
T ss_pred CcceeeeccC
Confidence 6777777543
No 37
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.9e-33 Score=252.60 Aligned_cols=267 Identities=19% Similarity=0.344 Sum_probs=234.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
.++++...+.|..+.+.|+++.||+++ .-.|++||++++. .+.++.+|...|.++.|..+|+++++|++||+++|||
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWd 111 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWD 111 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEe
Confidence 345555566899999999999999998 5689999999875 5788999999999999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....-...........|.++...| ++.+++.+...|
T Consensus 112 lR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG 189 (311)
T KOG0315|consen 112 LRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKG 189 (311)
T ss_pred ccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCc
Confidence 99866666665 6799999999999999999999999999999987223333444557799999999 999999999999
Q ss_pred cEEEEECCCC------CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEe
Q 002502 166 TIKIWNLGSP------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 166 ~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~ 238 (915)
..++|++-+. .++.+++.|.+.+..+.++|+++ +|++++.|.+++||+..+. +....+.+|...++..+||
T Consensus 190 ~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 190 NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred cEEEEEccCCCccccceEhhheecccceEEEEEECCCCc--EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 9999998654 34566788999999999999988 8999999999999999887 6667788999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEE
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
.+|.+|++|+.|+.+++|++..++.+....+|.....|++.
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999988777666654
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.5e-33 Score=305.99 Aligned_cols=287 Identities=26% Similarity=0.464 Sum_probs=261.1
Q ss_pred hhcccC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 9 RKLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 9 ~~l~~h-~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
..+.+| ...|.++.|||+|.++++++.++.+++|+..+.+ ..+.+.+|...|++++|+|+++++++++.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 334344 7889999999999999999999999999997777 7777888999999999999999999999999999999
Q ss_pred C-CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 86 Y-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 86 ~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
+ ..+..++++++|...|++++|+|+++++++|+.|++|++||++++ .+...+.+|...|.+++|++ +++.|++++.|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d 309 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASYD 309 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCCC
Confidence 9 556889999999999999999999999999999999999999997 89999999999999999999 99999999999
Q ss_pred CcEEEEECCCCC--CceEEecCCCC--eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccC---eEEEEE
Q 002502 165 RTIKIWNLGSPD--PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN---VSAVCF 237 (915)
Q Consensus 165 g~i~i~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~v~~ 237 (915)
+.|++||+.++. +...+..+... ++++.|+|++. ++++++.|+.+++||++.+.++..+.+|... +.+...
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 999999999988 45666655554 99999999988 8999999999999999999999999988774 444556
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC-CccEEEEEEecCCCeEEEEe--cCCeEEEec
Q 002502 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGY--DEGTIMVKI 299 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~~g~--~dg~v~i~~ 299 (915)
++.+.++++|+.|+.|++|++.++..+..+..| ...+..+.++|..+++++++ .|+.+.+|.
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 789999999999999999999999999999999 88999999999999999988 788888874
No 39
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=278.59 Aligned_cols=687 Identities=14% Similarity=0.200 Sum_probs=410.6
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
..+..+|++|.+.|.|++|+.||+.+|+|+.|..|.||+.+-...+ .+ .|...|.|+.|+|-...|++++-+ ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 4567789999999999999999999999999999999995433222 23 389999999999999999988653 46688
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecCCcceEEEEEecCC----CCEE
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKD----TNTF 158 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~----~~~l 158 (915)
+..... +... .....+.+.+|+.||++++.|-.+|+|.+-+-... .... ...+.+.+|++++|+|.. ...+
T Consensus 120 S~~qK~-V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~ 196 (1081)
T KOG1538|consen 120 SPEQKS-VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDIL 196 (1081)
T ss_pred Chhhhh-HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence 765422 2221 23567889999999999999999999999875443 3222 233567899999999943 3578
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002502 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 238 (915)
++.....++.++.+.. +.+..-..-.-...|+++.++|. |++.|+.|+.+.+|. +.|-.+.++......|++++..
T Consensus 197 aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 197 AVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEEeccceeEEEEecc-eeecccccCCCCchhheeccCCc--EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 8999999999999854 43433333344557999999998 999999999999997 5588888887788899999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccC---CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEE
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~ 315 (915)
|+++.++.|+.||+|..|++............ ....+.+- -+.|.++. .++|........+++. ..++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVi----vQhLi~~q---kvrIkC~DLVkKiaiY-rnrLA 344 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVI----VQHLITEQ---KVRIKCKDLVKKIAIY-RNRLA 344 (1081)
T ss_pred cCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHH----HHHHhhcc---eeeeeHHHHHHHHHhh-hhhhe
Confidence 99999999999999999986532211000000 00000000 00011100 1111100000000010 11222
Q ss_pred EEeecceEEEEeeecccceeccCCceeeee--eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec-----ccccC
Q 002502 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLA--VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA-----WRNRS 388 (915)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~-----~~~~~ 388 (915)
......+.++.+. +++...+. +++--......+-+. -.++++++|.+.++..++... |....
T Consensus 345 VQLpeki~iYel~---------se~~~~mhY~v~ekI~kkf~cSLlV--Vc~~HiVlCqekrLqClDF~Gvk~ReW~M~S 413 (1081)
T KOG1538|consen 345 VQLPEKILIYELY---------SEDLSDMHYRVKEKIIKKFECSLLV--VCANHIVLCQEKRLQCLDFSGVKEREWQMES 413 (1081)
T ss_pred ecccceEEEEecc---------ccccccchhHHHHHHHhhccceEEE--EEcCeEEEEcccceeeecccchhhhhhhHHH
Confidence 2222333333322 22211111 111000011111111 235678888888888887764 33333
Q ss_pred ccceeEEEEecCCc--EEEEecCC-eEEEeccCcc-------eeeeeec-CcccceeecCcEEEEeeCC-eEEEEeccCC
Q 002502 389 FGSALEFVWSSDGE--YAVRESSS-KIKIFSKNFQ-------EKRSVRP-TFSAERIYGGTLLAMCSND-FICFYDWAEC 456 (915)
Q Consensus 389 ~~~~~~~~~s~dg~--~l~~~~~~-~v~v~~~~~~-------~~~~~~~-~~s~~~i~~g~~La~~~~~-~i~~~d~~~~ 456 (915)
+.....+.-.|-|+ +++...+| ..+|| ++.. ....++. .++.. .+.||+..++ +..+||+.++
T Consensus 414 ~iRYikV~GGP~gREgL~vGlknGqV~kiF-~dN~~PiLl~~~~tAvrClDINA~----R~kLAvVDD~~~c~v~DI~t~ 488 (1081)
T KOG1538|consen 414 LIRYIKVIGGPPGREGLLVGLKNGQVLKIF-VDNLFPILLLKQATAVRCLDINAS----RKKLAVVDDNDTCLVYDIDTK 488 (1081)
T ss_pred HHHhhhhhcCCCCcceeEEEecCCcEEEEE-ecCCchhheecccceeEEeeccCC----cceEEEEccCCeEEEEEccCC
Confidence 33333344445553 34444454 45566 3321 1112222 45555 6788888877 8999999999
Q ss_pred cEEEEEeccccEEEEcC-CCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEE
Q 002502 457 RLIRRIDVTVKNLYWAD-SGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCF 535 (915)
Q Consensus 457 ~~i~~~~~~i~~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~ 535 (915)
+.+-. +..+.+|.||. ...++++.+..++.+--.+ |+.-.+ +.. + |
T Consensus 489 elL~Q-Epg~nSV~wNT~~E~MlcfT~~g~L~VR~~~----------------------~P~h~q---k~~-G------~ 535 (1081)
T KOG1538|consen 489 ELLFQ-EPGANSVAWNTQCEDMLCFTGGGYLNVRAST----------------------FPVHRQ---KLQ-G------F 535 (1081)
T ss_pred ceEee-cCCCceEEeeccccceEEEecCCceEEEecc----------------------CCcchh---cce-E------E
Confidence 87765 35789999995 4567777766555442100 111100 000 0 2
Q ss_pred EEEccCCeEEEEECCEEeEEEecccc--eEEE-----EEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHh
Q 002502 536 IYNNSSWRLNYCVGGEVTTMFHLDRP--MYLL-----GYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERAN 608 (915)
Q Consensus 536 i~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~ 608 (915)
+.+-..+++ ||.-+.. +..++-| .... +.++..-++.|.. ++. -+...+. +.+++--+++.|-
T Consensus 536 VvG~~gsk~-FCL~~~~--i~~~evp~~~~m~q~Ieag~f~ea~~iaclg----Vv~--~DW~~LA-~~ALeAL~f~~AR 605 (1081)
T KOG1538|consen 536 VVGYNGSKI-FCLHVFS--ISAVEVPQSAPMYQYIERGLFKEAYQIACLG----VTD--TDWRELA-MEALEALDFETAR 605 (1081)
T ss_pred EEEecCceE-EEEEeee--eecccccccccchhhhhccchhhhhcccccc----eec--chHHHHH-HHHHhhhhhHHHH
Confidence 222221221 2210000 0111100 0000 1111111222210 000 0000000 1111111111110
Q ss_pred hhcCC---------------------CC-----------cchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHH
Q 002502 609 EILPS---------------------IP-----------KEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLE 656 (915)
Q Consensus 609 ~~l~~---------------------i~-----------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~ 656 (915)
..+.. .| .+-...+++.+.+.|+-.+|+++.+ .+.++|
T Consensus 606 kAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD 675 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFD 675 (1081)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHH
Confidence 00000 01 1112456777778888888885554 555699
Q ss_pred HHHHHHHHcCChh---HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHH---------------HHHHH
Q 002502 657 VAQEIATEVQSES---KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGI---------------SKLAS 718 (915)
Q Consensus 657 ~A~~~a~~~~~~~---~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~---------------~~l~~ 718 (915)
.|.++......++ +-+.-|++|-...+...|.+++..+|+..+++.+....|..+++ +.++.
T Consensus 676 ~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ 755 (1081)
T KOG1538|consen 676 YAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCAT 755 (1081)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 9999988766543 55667889999999999999999999999988887777766654 34455
Q ss_pred HHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002502 719 LAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (915)
Q Consensus 719 ~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~ 779 (915)
-....+..-+|..++..+||...-++|.++.++|++|..+|..+ |+.++.+.-.+.++|.
T Consensus 756 ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLA 815 (1081)
T ss_pred HHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhh
Confidence 55666777899999999999999999999999999999999987 6666666555555554
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-33 Score=298.45 Aligned_cols=244 Identities=25% Similarity=0.486 Sum_probs=228.9
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------------------ceeEEEecCCC
Q 002502 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-------------------------------DKVKVFEAHTD 100 (915)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~-------------------------------~~~~~~~~~~~ 100 (915)
++......++|..|++|++.||.|..|..|++|.+... ....++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34445667999999999999999999999999988631 12345678999
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002502 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (915)
+|....|+|+.++|++||.|+++++|.+.+. .+...+.+|..+|+.+.|+| .+-+|++++.|++-++|......+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999997 78888899999999999999 899999999999999999999999999
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+.+|...|.|+.|+|+.. |+++|+.|.+|++||..+|..++.|.+|.++|++++|||+|++|++|+.||.|++||+.+
T Consensus 531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 261 ~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
++++..+..|.+.|.++.|+.+|..||+|+.|..|++|.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999999984
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=249.36 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=254.0
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.+.+..|.++|.++.|+-||+|.++++.|.+|++||...|.+++++.+|...|..++.+.|+..+++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
||+..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++. ..+.+++......|+++..+ +..++.|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999864 36777888788889999985 578999999999
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeE--EEEEeCCCCEE
Q 002502 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS--AVCFHPELPII 244 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~v~~~~~~~~l 244 (915)
++.||++.++...- ....+|+|++|+++++ ..++++-|+++++.|-.+|+.+..+++|...-. ..+++.....+
T Consensus 167 vRtydiR~G~l~sD--y~g~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD--YFGHPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehh--hcCCcceeEEecCCCC--EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 99999998865443 3457899999999998 799999999999999999999999999877543 34566666799
Q ss_pred EEEEcCCeEEEEeCCCceeeeeeccCCcc-EEEEEEecCCCeEEEEecCCeEEE
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
++|++||.|++||+.....+..+..+... +.+++++|.-..+.+++..+.+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99999999999999999999999888776 899999999888888776665543
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-33 Score=273.20 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=248.7
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002502 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (915)
.+-.+.+..|++.|.-+.||++|++||+++.|.+..||.+... ++.+++.+|..+|..+.||||.++|++++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 4456778899999999999999999999999999999987554 4577888999999999999999999999999999
Q ss_pred EEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEE
Q 002502 82 RVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~ 159 (915)
.+||..+|.....+. +|...+.+.+|.|||..+++|+.|++|..||++.. . .....+ ....|.+++.++ |+.+++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~-~~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-I-LGNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-h-hhcccccccceeEEEEEcC-CCcEEE
Confidence 999999999988775 45678999999999999999999999999999875 2 222222 336689999999 899999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccC--eEEEEE
Q 002502 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVCF 237 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~v~~ 237 (915)
+.+.|..|++++..+..... +.....+|++++++.++. ++++.-.+..+.+||+.....++.+.||... +-.-||
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k--~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK--LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred EEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc--EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 99999999999987654443 334567899999998877 8889999999999999988888888888765 333455
Q ss_pred eC-CCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCC-CeEEEEecCCeEEEecC
Q 002502 238 HP-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 238 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~g~~dg~v~i~~~ 300 (915)
-. +..++++||+|+.|+||+..+|+++.++.+|...|.+++|+|.. .++|++++||+|+||-.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 44 44799999999999999999999999999999999999999964 57899999999999843
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=264.59 Aligned_cols=289 Identities=18% Similarity=0.215 Sum_probs=251.5
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (915)
..-.+.+|.+.|+|+.||.+|.+||+|+-+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 44567899999999999999999999999999999999999988888766677889999999999999999999999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.+....+.+.+|..++++-.|.|+|++++++..||+|++|++.++......-........++.++. .+..++.|+.++.
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCcc
Confidence 998888999999999999999999999999999999999999999444444333344567788887 7889999999999
Q ss_pred EEEEECCCCCCceEEe--------cCCCCeeEEEEEeCC-CcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002502 167 IKIWNLGSPDPNFTLD--------AHQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 237 (915)
+++.+..+++.+.... .+...+.|+.+.|.. .-++.++|+-||+|.|||+...+...... |...|+.+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEE
Confidence 9998888777665554 345556666666543 33478899999999999998766555554 8889999999
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
-+ ..+|++++.+|.|+.||.++|++..++.+|...|.+++++|+.++++++++|++..++
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99 6899999999999999999999999999999999999999999999999999998874
No 44
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.3e-30 Score=261.27 Aligned_cols=433 Identities=19% Similarity=0.321 Sum_probs=316.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCC--------eEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEEe
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSG--------TVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGA 76 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg--------~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~ 76 (915)
-++.+.+|+..|.|++.||+.-.+++|...| .|+|||..+-..+..+......|.|++|++ .|..++...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 4567889999999999999999999886655 499999888888888877888999999998 355665553
Q ss_pred --CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecC-CcceEEEEEe
Q 002502 77 --DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGH-SHYVMQVTFN 151 (915)
Q Consensus 77 --~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~i~~~~~~ 151 (915)
.+..+.|||+..+......+..+..+....|+|.++.+++....|.+.+|+++++....+ +++++ ...|.|++|.
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~ 255 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL 255 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence 356899999998888877777788899999999998888888889999999998733222 33333 4679999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE--------
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-------- 223 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------- 223 (915)
+ ++ -+++|..+|.|.||+..+.+..+....|.++|.+++...+|. |++|+.|+.|..||-. -+.++
T Consensus 256 e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~-y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 E-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDN-YRKLRETELPEQF 329 (626)
T ss_pred C-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc---EeecCccceEEecccc-ccccccccCchhc
Confidence 8 44 578999999999999988777777779999999999998886 8889999999999832 11110
Q ss_pred ---------------------------------EecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC
Q 002502 224 ---------------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 224 ---------------------------------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
...+|......++.+|+...+++++.|+.+++|+ ..+++.+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 1235666677788888888888888888888888 44555554433
Q ss_pred CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecC
Q 002502 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
.++.++.|+|.| .+|+|+..|...+- +.....+ +.+ .
T Consensus 408 -d~~~~~~fhpsg-~va~Gt~~G~w~V~----------d~e~~~l--------------------------v~~-----~ 444 (626)
T KOG2106|consen 408 -DPAECADFHPSG-VVAVGTATGRWFVL----------DTETQDL--------------------------VTI-----H 444 (626)
T ss_pred -CceeEeeccCcc-eEEEeeccceEEEE----------eccccee--------------------------EEE-----E
Confidence 567788888888 88888888877662 1111111 000 1
Q ss_pred CcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-------CccceeEEEEecCCcEEEEec-CCeEEEeccC---
Q 002502 351 TCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKN--- 418 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~--- 418 (915)
.+..+++.++++|+|.+||+++ |+.+.+|.+.....+ ....++.+.||+|++|+.+.+ |-.|-.|...
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 1133567999999999999999 999999987654322 226789999999999999999 6788888522
Q ss_pred -cceeeeeec-------Cccc----ce--ee------cCcEEEEeeCC-eEEEEeccCCcEEE---EE---eccccEEEE
Q 002502 419 -FQEKRSVRP-------TFSA----ER--IY------GGTLLAMCSND-FICFYDWAECRLIR---RI---DVTVKNLYW 471 (915)
Q Consensus 419 -~~~~~~~~~-------~~s~----~~--i~------~g~~La~~~~~-~i~~~d~~~~~~i~---~~---~~~i~~v~~ 471 (915)
....+.+++ .|.. ++ +. ..++||+++.. +|++|...-.++-. .+ ...|++|+|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 111222222 1211 10 00 36688888877 99999876443322 22 247999999
Q ss_pred cCCCCEEEEEeCCeEEEEE
Q 002502 472 ADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 472 s~dg~~la~~~~~~~~~~~ 490 (915)
..+...+.+.+.|..++-|
T Consensus 605 l~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred eeCCceEEecCCCceEEEE
Confidence 9776666666666554433
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-32 Score=261.09 Aligned_cols=249 Identities=24% Similarity=0.404 Sum_probs=231.7
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+.+.+.+|.+.|+|+++.|-+.+|++|+.|++|.|||+.+|+...++.+|...++.+++|+-.+|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
+.+ +.++.+.+|-+.|.|+..+| .-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|... .+++|+.|
T Consensus 223 e~n-kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--qvit~S~D 298 (460)
T KOG0285|consen 223 EYN-KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--QVITGSHD 298 (460)
T ss_pred hhh-hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--ceEEecCC
Confidence 987 77888889999999999999 788999999999999999999999999999999999999987655 59999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEE
Q 002502 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 288 (915)
++|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..|..+..+..|..-+.+++...|+ .+++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 999999999999999999999999999999999999999987 69999999999999999999999999998875 6788
Q ss_pred EecCCeEEEecCCCc
Q 002502 289 GYDEGTIMVKIGREE 303 (915)
Q Consensus 289 g~~dg~v~i~~~~~~ 303 (915)
|+++|.+.+|..+..
T Consensus 377 G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSG 391 (460)
T ss_pred cCCceEEEEEecCcC
Confidence 999999999854443
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=264.48 Aligned_cols=283 Identities=21% Similarity=0.336 Sum_probs=257.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEE--------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSF--------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
+..+.+-|..|||||++|++|+.||-|.+||+.+|++.+.+ -.++.+|.|+.|+.|...+++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44566889999999999999999999999999999765543 3478899999999999999999999999999
Q ss_pred ECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 85 d~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.+.+|.+++.|. +|+..|+|+.||.|+..+++++.|.++++.-++++ ++.+.+.+|.+.|....|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999997 89999999999999999999999999999999999 88889999999999999999 9999999999
Q ss_pred CCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC---CccCeEEEEEe
Q 002502 164 DRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---HTHNVSAVCFH 238 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~ 238 (915)
||+|++|+..+.++..+++ +...+|+++-..|.... .++++...++|+|.+++ |+.++++.. ..+...+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999998887775 34567888888887654 78888899999999987 888888864 24457778899
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
|.|.++.+.++|+.++.|...+|++..++..|...+-.++-+|..+.+|+-+.||.+.+|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999883
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.1e-31 Score=242.81 Aligned_cols=291 Identities=24% Similarity=0.356 Sum_probs=236.6
Q ss_pred eeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC---ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002502 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTM---DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~---~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
.++.+++|.+.+..++|+|- |..|++++.|+.|++|+...+ .+...+ .+|+..|++++|+|.|++|+++|.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678889999999999998 889999999999999998853 333333 3799999999999999999999999999
Q ss_pred EEEECCC-CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCc
Q 002502 124 KLWDWEK-GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 124 ~iwd~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
.||.-.. ...+...+.+|...|.|++|++ ++++||+++.|++|-||.+..+. ....++.|...|..+.|+|..+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED- 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-
Confidence 9997653 3578889999999999999999 99999999999999999987543 4567789999999999999877
Q ss_pred CEEEEEECCCeEEEEECC---CCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEE
Q 002502 200 PYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|++++.|.+|++|+-. ...+++++.+|...|.+++|+|.|..|++++.|++|+||...+.- -..|...++.
T Consensus 164 -lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 -LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred -eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 89999999999999866 346899999999999999999999999999999999999855211 1235578899
Q ss_pred EEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002502 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
+.|. ...|++++.|+.++++.... .+++....+..+.-..++..+
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~---------------------------------~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD---------------------------------SPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC---------------------------------CCCCchHHHHHhhhccccccc
Confidence 9998 45799999999999852221 112222222222335667788
Q ss_pred ceEEECCC-CCEEEEEc-CCcEEEEEe
Q 002502 357 QSLKHNPN-GRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 357 ~~l~~s~~-g~~lav~~-~~~~~i~~~ 381 (915)
.+++|+|. ..+|+.++ ||.+.+|..
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99999994 44666666 788888864
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-31 Score=250.79 Aligned_cols=285 Identities=19% Similarity=0.323 Sum_probs=242.0
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+..+.+|++.|..+.|+|+|.+|++|+.|..|.+|+. ...+....+++|++.|..+.|.++++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3456789999999999999999999999999999995 445567788899999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
+++ +....+.+|...+.++.-+..+..++.+++.||++++||+++...++++. .+.+++++.|...++ -+.+|+-|
T Consensus 120 ~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~--qv~sggId 195 (338)
T KOG0265|consen 120 ETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD--QVISGGID 195 (338)
T ss_pred ccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc--ceeecccc
Confidence 999 77888899999999988555566788899999999999999988877764 467789999998888 49999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc----eeeeeeccCC----ccEEEEEEe
Q 002502 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL----ERVWAIGYM 280 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~----~~v~~i~~s 280 (915)
+.|++||++.+.....+.+|..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.++. .....++|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99999999999999999999999999999999999999999999999998754 3455565542 245678999
Q ss_pred cCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002502 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|+++.+.+|+.|..+++|...... ++ ..++.+...+..+.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~---------~l-------------------------------yklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRR---------IL-------------------------------YKLPGHYGSVNEVD 315 (338)
T ss_pred CCCCccccccccceEEEeeccccc---------EE-------------------------------EEcCCcceeEEEee
Confidence 999999999999999997432211 11 11356667788999
Q ss_pred ECCCCCEEEEEc-CCcEEE
Q 002502 361 HNPNGRFVVVCG-DGEYII 378 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i 378 (915)
|+|...++..|+ |.++.+
T Consensus 316 Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 316 FHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ecCCCcEEEEeccCceeEe
Confidence 999999888887 555543
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-33 Score=253.65 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=265.4
Q ss_pred hhhhcccCCCCEEEEEEcC---CCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 7 IKRKLAQRSERVKSVDLHP---SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp---~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
+.....||+.+|..++||| +|-+|++++.||.-.+-+-++|..+-+|.+|++.|.+...+.+...-++++.|-+-+|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3445679999999999997 7778999999999999999999999999999999999999999989999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
||.-+|..+..|. |...|..++|+.|.++|++|+.+..++|||++........+.+|.+.|..+.|.. ..+.|++++.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc
Confidence 9999999999987 7888999999999999999999999999999988777888899999999999998 7788888899
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002502 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 243 (915)
|++|++||.++++.+.++. ...+|+++.++++|+ +++....+.|.+||..+-..++.++ ....|.+.+++|+...
T Consensus 164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeecc-CccccccccccCCCce
Confidence 9999999999999998887 577899999999997 7777778899999999988888877 4567999999999999
Q ss_pred EEEEEcCCeEEEEeCCCceeeeee-ccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCc
Q 002502 244 IITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
+++|++|+.++.||..++..+..+ ++|.++|.|+.|+|+|...++|+.||+|++|.....
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999999988886 788999999999999999999999999999965443
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-30 Score=310.93 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=240.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----c----eeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----T----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFI 81 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i 81 (915)
+..|.+.|.+++|+|+|++||+|+.||.|+||+..+. . ....+. +...|.+++|+| ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997542 1 122233 456799999987 47899999999999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||++++ .....+..+ ..+.++.|++.++..|++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999999999999999999999997 7789999999999999999987 455555544 578999997657999999
Q ss_pred EECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC------CcEEEEecCCccCeE
Q 002502 161 ASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVS 233 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~ 233 (915)
|+.||.|++||+++.+ +...+.+|...|.++.|. ++. ++++++.|+.|++||++. ..++..+.+|...+.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 566778899999999997 444 799999999999999974 357888999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeee-------------ccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-------------NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 234 ~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+++|+|++++|++|+.||.|++|+......+..+ ..+...|.+++|+|++..|++|+.+|.|.+|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 9999999999999999999999997765433222 2233569999999999999999999999997
No 51
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-33 Score=278.88 Aligned_cols=288 Identities=21% Similarity=0.391 Sum_probs=254.8
Q ss_pred hhhhhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
.+...+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|+.++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677899999999999999 888999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||++||+++..+.. ...+.|+.|+|++ +.+++|+.|+.|+.||++++ .+.+.+..|-+.|..+.|-+ ++..|++.+
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999999874 5578999999998 78899999999999999999 67788888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC---cEEEEecCCcc--CeEEEE
Q 002502 163 LDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTH--NVSAVC 236 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--~v~~v~ 236 (915)
.|++++||+.+.+-++... ........|+..+|++. ++++-+.|..|.++.+... .....+.+|.. --..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887766443 33445567888888877 8999999999999986532 22345566643 355788
Q ss_pred EeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecC-CCeEEEEecCCeEEEe
Q 002502 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVK 298 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l~~g~~dg~v~i~ 298 (915)
|||||.+|++|+.||.+.+||.++-+++..++.|.+.+..+.|+|. ...+|+++.+|.|.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999999999999999999999999999999999999997 4578889999999997
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=262.24 Aligned_cols=288 Identities=25% Similarity=0.377 Sum_probs=256.0
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+...+.+|..+|+.+-|+|+-..+++++.|++|++||+.+++....+++|.+.+..+.|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.+...+.+...+|...|.+++|-| .++++++++.|.+|+.|++.++-++.++.+|..-|..++.+.+|. ++++++.|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~As~s~d 256 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIASCSND 256 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEEecCCC
Confidence 987678888899999999999999 789999999999999999999999999999999999999887776 89999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCC---------------CCEEEEEEcCCeEEEEeCCCceeeeeeccCCcc
Q 002502 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE---------------LPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~---------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (915)
.+|++|-+.++++...++.|..+|-+++|.|. ++++.+++.|++|++||+.++.++.++.+|...
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999999999999999999999999774 258999999999999999999999999999999
Q ss_pred EEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002502 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (915)
Q Consensus 274 v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (915)
|..++|+|.|++|+++.+|+++++|. +.+++.. +.+..++
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwd------------------------------------l~~~~cm----k~~~ah~ 376 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWD------------------------------------LKNLQCM----KTLEAHE 376 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEE------------------------------------eccceee----eccCCCc
Confidence 99999999999999999999999973 2222221 1234556
Q ss_pred cCCceEEECCCCCEEEEEc-CCcEEEE
Q 002502 354 LYPQSLKHNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~-~~~~~i~ 379 (915)
..++++.|+.+..++++|+ +..+.+|
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeee
Confidence 6677788877777777776 6666655
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=268.46 Aligned_cols=273 Identities=25% Similarity=0.436 Sum_probs=240.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
.+..|.|+.+. ...+++|..|++|+|||..+..+++.+.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45678998886 4568999999999999999999999999999999999985 4589999999999999999999999
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
++-.|...|..+.|+ +.++++++.|.+|.+||+.... .+...+.+|...|..+.|+ ..++++++.|++|++|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 999999999999998 4589999999999999998652 3345678999999999996 46999999999999999
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002502 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 251 (915)
+.+.+.+.++.+|..+|.|+.+. + .++++|++|.+|++||+..|.+++.+++|..-|.++.|.. +.|++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhcc--C--eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 99999999999999999999983 3 3899999999999999999999999999999999999964 6799999999
Q ss_pred eEEEEeCCCce---------eeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCc
Q 002502 252 TVRIWHATTYR---------LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 252 ~v~iwd~~~~~---------~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
+|++||+.++. ++.++..|.++|..+.|. ...+++++.|.+|.+|.....
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 99999988654 344566778899999994 567888999999999854443
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-28 Score=254.95 Aligned_cols=476 Identities=14% Similarity=0.198 Sum_probs=337.7
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCcee-EEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002502 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
.-...+|+++|||.+.+.||++-.+|.|.||++..+-.. ..+.++ +..|.+++|+ ++..|++.+-+|.|.-||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 345678999999999999999999999999999886433 345554 5689999999 4556888889999999999999
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE-EEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+....+....+.|++|+.+|.+..+++|++||.+..++...+.... ..+...++++.++.|+| ++..++.|+.||.|+
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIR 179 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEE
Confidence 9999999999999999999999999999999988888887763322 24455678999999999 888899999999999
Q ss_pred EEECCCCCCceEEe--------cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC
Q 002502 169 IWNLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 169 i~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 240 (915)
+||..++....... ....-|+++.+-.++ .|++|.+.|+|.+||...+..++.+..|...|.+++..++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN 256 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence 99998887665221 123346777777665 5999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCcee----eeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCccee-----EEcCC
Q 002502 241 LPIIITGSEDGTVRIWHATTYRL----ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA-----SMDNS 311 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~-----~~~~~ 311 (915)
+.+++++|.|+.|..|...+... ......|...+.+++..++ .+++|+.|+.+.+-..++.+.. ...+.
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~ 334 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPA 334 (691)
T ss_pred CCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccc
Confidence 99999999999999998776543 2233456678999999877 8999999999998543331110 00011
Q ss_pred Cc-EEEEeecceEEEEeeecccceec----cCCceeeeeeee-cCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc
Q 002502 312 GK-IIWAKHNEIQTVNIKSVGADYEV----TDGERLPLAVKE-LGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR 385 (915)
Q Consensus 312 g~-~~~~~~~~i~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~ 385 (915)
+. +..+..+.+.+.........|.+ ..|+.-...+.. .-.....+++-+.||+|+++++++-.+..+|.++...
T Consensus 335 ~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~ 414 (691)
T KOG2048|consen 335 SDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP 414 (691)
T ss_pred cceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc
Confidence 11 11111111111111111111111 111111100101 1122335788999999999999998899999776532
Q ss_pred c----------cCccceeEEEEecCCcEEEEec--CCeEEEeccC---cceeeeeec----------CcccceeecCcEE
Q 002502 386 N----------RSFGSALEFVWSSDGEYAVRES--SSKIKIFSKN---FQEKRSVRP----------TFSAERIYGGTLL 440 (915)
Q Consensus 386 ~----------~~~~~~~~~~~s~dg~~l~~~~--~~~v~v~~~~---~~~~~~~~~----------~~s~~~i~~g~~L 440 (915)
+ .....+..+.|+-|+..++..+ ...+.+++.. +++...+.+ ..+++ |+++
T Consensus 415 ~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd----G~yi 490 (691)
T KOG2048|consen 415 NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD----GNYI 490 (691)
T ss_pred ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----CCEE
Confidence 1 1223567788888886655554 4666666543 222222211 34555 8999
Q ss_pred EEeeCC-eEEEEeccCCcEE---EEEeccccEEEEcC-CCC-EEEEEeCCeEEEEEecHHHHHH
Q 002502 441 AMCSND-FICFYDWAECRLI---RRIDVTVKNLYWAD-SGD-LVAIASDTSFYILKYNRDVVSA 498 (915)
Q Consensus 441 a~~~~~-~i~~~d~~~~~~i---~~~~~~i~~v~~s~-dg~-~la~~~~~~~~~~~~~~~~~~~ 498 (915)
|+.+.. .|.+|++++++.- .++...++.+.++| +.. .++..++..++-++.+...+.+
T Consensus 491 aa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 491 AAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred EEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 888876 9999999988632 24556889999994 434 4455556667777765444443
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-30 Score=253.40 Aligned_cols=277 Identities=27% Similarity=0.440 Sum_probs=241.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCC
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~g~~dg~i~vwd~~~~ 89 (915)
.|.+-|.++... +.++++|++||.++||| ..|+..+.+.+|.++|.+++|.-... .|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477778777777 78999999999999999 68889999999999999999965443 5999999999999998876
Q ss_pred cee----EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC------------------------ceEEEEeecC
Q 002502 90 DKV----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------WMCTQIFEGH 141 (915)
Q Consensus 90 ~~~----~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~------------------------~~~~~~~~~~ 141 (915)
+.. +.-.+|...|.++...++|..+++|+.|.+|.||+..+. +.+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 543 334599999999999999999999999999999993211 2455678899
Q ss_pred CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc-
Q 002502 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 220 (915)
..+|.++.|++ ...+++++.|.+|+.||+.++....++. ....++|+.++|..+ +|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc--eeeecCCCCceeecCCCCCCC
Confidence 99999999995 7899999999999999999998887776 466789999999766 89999999999999999764
Q ss_pred --EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCCCce-eeeeeccCCccEEEEEEecCCCeEEEEecCCeEE
Q 002502 221 --CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 221 --~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~ 296 (915)
..+++.+|.+.|.++.|+|... .|++|+.||++++||+++.+ ++..+..|...|.++.|.. +..|++|+.|..++
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 5678899999999999999765 67899999999999999887 8999999999999999974 56899999999999
Q ss_pred Ee
Q 002502 297 VK 298 (915)
Q Consensus 297 i~ 298 (915)
+.
T Consensus 414 i~ 415 (423)
T KOG0313|consen 414 IF 415 (423)
T ss_pred Ee
Confidence 85
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=260.31 Aligned_cols=276 Identities=21% Similarity=0.410 Sum_probs=242.5
Q ss_pred CCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 15 SERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~-la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
.+.|.+++|||..++ +|+++ +-.|.||+..+....+.+.-....|.++.|..||++|++|+..|.|+|||+++...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 467999999998875 45544 5679999998888888888888899999999999999999999999999988877788
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002502 94 VFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.+.+|..++..+.|+|.++ .+++|++|+.+++||+.+.. ....+.+|+.+|.|.+|+|.++.++++|+.||+|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 8999999999999999654 56788899999999999984 466788999999999999977889999999999999999
Q ss_pred CCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002502 173 GSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 250 (915)
+... .+..+ .|..+|..+.+-|+|. .+++++ ...|++||+-+|. .+..+..|...|+|+++..++..|++|+-|
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs--~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS--LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC--EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 9874 44444 5999999999999987 455554 5689999998655 445555599999999999999999999999
Q ss_pred CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+.|++||+.+.+.+..+..+ ++|.+++.+|+++.+++|..+|.+.+
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeee
Confidence 99999999999999999887 89999999999999999999999887
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=8.9e-28 Score=255.45 Aligned_cols=464 Identities=15% Similarity=0.249 Sum_probs=344.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c
Q 002502 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-D 90 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~-~ 90 (915)
..+.+.|+|++-+.+ ++.++. ...|.+|- ........+..|...|.-+. +=|.+++++..++.+.||+..+. .
T Consensus 73 ~~lp~~I~alas~~~--~vy~A~-g~~i~~~~-rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 73 KPLPDKITALASDKD--YVYVAS-GNKIYAYA-RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCCceEEEEecCc--eEEEec-CcEEEEEE-ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 457788999887654 444444 45688887 33355666777877776554 56889999999999999998874 1
Q ss_pred e----eEEEecCCCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 91 K----VKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 91 ~----~~~~~~~~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
. +..++...+.|+++ +||.. +.++.|+..|.+.+|+++++ +....+.++...|+++.-+| --..++.|..+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCC-cceEEEEeccC
Confidence 1 12223333347776 45643 46899999999999999999 78888999999999999999 78899999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCE
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPI 243 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~ 243 (915)
|+|.+++++.++.+.+++...++|++++|..+|.. ++++|+..|.+.+||+...+.+..+. .|.+.|....|.|..+.
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 99999999999999999866799999999998874 88889999999999999877766665 68899999999999999
Q ss_pred EEEEEcCCeEEEEeCCC--c--eeeeeeccCCccEEEEEEe-cCCCeEEEEecCCeEEEec----------C--------
Q 002502 244 IITGSEDGTVRIWHATT--Y--RLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI----------G-------- 300 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~--~--~~~~~~~~~~~~v~~i~~s-~~~~~l~~g~~dg~v~i~~----------~-------- 300 (915)
+++.+.|+.+++|=..+ | +.++.-.+|..+..++.|. .+|..+.+++.|++++.+. +
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999988885443 3 5677778899999999998 7788999999999777631 1
Q ss_pred -----------CCcceeEEcCCC--cEEE-----EeecceEEEEeeecccceeccCCce--eeeeeeecCCcccCCceEE
Q 002502 301 -----------REEPVASMDNSG--KIIW-----AKHNEIQTVNIKSVGADYEVTDGER--LPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 301 -----------~~~~~~~~~~~g--~~~~-----~~~~~i~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~l~ 360 (915)
+.+++..+...+ ...| ...++... ..|+..+... -.+..+.+......+++++
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~-------~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA-------YTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE-------EEEeccCcccccEEecCccccccCcceEEEE
Confidence 112233332211 1111 11111111 1133332211 1122333344567788999
Q ss_pred ECCCCCEEEEEc-CCcEEEEEeeccc--------ccCccceeEEEEecCCcEEEEec-CCeEEEeccC------------
Q 002502 361 HNPNGRFVVVCG-DGEYIIYTALAWR--------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN------------ 418 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~------------ 418 (915)
.++.|.+..+|. .|.+-+|+.+++. ..+.+.++.++...-++.+++++ +|.+++||..
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 999999999997 8999999988763 23446788888776677777776 8999999832
Q ss_pred ------------------------------------cceeee--eecCcccceeecCcEEEEeeCC-eEEEEeccCCcEE
Q 002502 419 ------------------------------------FQEKRS--VRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (915)
Q Consensus 419 ------------------------------------~~~~~~--~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i 459 (915)
|.++.. ...+|||| |++|++++.| +|++||+.++.++
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D----grWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD----GRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC----CcEEEEeecCCcEEEEeccCccee
Confidence 111111 11278888 9999999998 9999999999999
Q ss_pred EEEe--ccccEEEEcCCCCEEEEEeCC-eEEEEEecHHHH
Q 002502 460 RRID--VTVKNLYWADSGDLVAIASDT-SFYILKYNRDVV 496 (915)
Q Consensus 460 ~~~~--~~i~~v~~s~dg~~la~~~~~-~~~~~~~~~~~~ 496 (915)
..+. .++.++.|||+|.+||++..+ .-+.+|.|+...
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF 651 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF 651 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence 8776 589999999999999999766 344556665443
No 58
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-29 Score=265.23 Aligned_cols=285 Identities=30% Similarity=0.506 Sum_probs=244.0
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+++.+|..+|.++.|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCe
Q 002502 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
+ .....+..|...+.++.|+| ++.++++++.+|.|.+||+.+++....+..|...+.++.|+|++. ++++++.++.
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~ 158 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGT 158 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCc
Confidence 6 55666778888999999999 677888888899999999998888888888899999999999855 6777777999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
|++||+++++.+..+..|...+.++.|+|+++.+++++.+|.|++||+.+++....+..+...+.++.|+|++.++++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999998998888888888999999999999999999999999999999998888877878999999999988888888
Q ss_pred cCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002502 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (915)
Q Consensus 291 ~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (915)
.+|.+.+|..... ... ..+..+...+..+.|+|++++|++
T Consensus 239 ~~~~i~i~~~~~~---------~~~-------------------------------~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 239 EDGTIRVWDLRTG---------ECV-------------------------------QTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCCcEEEEEcCCc---------eeE-------------------------------EEccccCCcEEEEEECCCCCEEEE
Confidence 8999998632210 000 001123335677888888887777
Q ss_pred Ec-CCcEEEE
Q 002502 371 CG-DGEYIIY 379 (915)
Q Consensus 371 ~~-~~~~~i~ 379 (915)
++ ++.+.+|
T Consensus 279 ~~~d~~i~iw 288 (289)
T cd00200 279 GSADGTIRIW 288 (289)
T ss_pred ecCCCeEEec
Confidence 76 6777776
No 59
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.7e-29 Score=260.19 Aligned_cols=440 Identities=15% Similarity=0.243 Sum_probs=306.4
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeEEEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRVY 84 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~vw 84 (915)
..+..|..+++|++|||+|+|+|+|- ....++||++.....+..|..|+-.|+|++|+|.++++++.+. |..|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 34456677999999999999999985 4667999999998889999999999999999999999997765 7788999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------------------------------
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--------------------------------- 131 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--------------------------------- 131 (915)
|++..-.... ..-...|..++|+.+|.|+++.+. ..|++|.++.+
T Consensus 152 dWr~N~~~as-nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 152 DWRVNSSGAS-NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred hhhhcccccc-cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence 8753221111 112344555666666655555543 35555554322
Q ss_pred -------------------------------------------------------------ceEEEEeecC---------
Q 002502 132 -------------------------------------------------------------WMCTQIFEGH--------- 141 (915)
Q Consensus 132 -------------------------------------------------------------~~~~~~~~~~--------- 141 (915)
.-.......|
T Consensus 230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 0000000000
Q ss_pred --------------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCC-------
Q 002502 142 --------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGG------- 197 (915)
Q Consensus 142 --------------~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~------- 197 (915)
-.....+.|+| ..+.+.+...|..+++||++..+.+ ..+-.|...|+.+.-.|-.
T Consensus 310 ~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a 388 (1080)
T KOG1408|consen 310 SQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAA 388 (1080)
T ss_pred ccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccc
Confidence 01234667877 6778888899999999999875433 3344577777766655511
Q ss_pred --CcCEEEEEECCCeEEEEECCCCc---EEE----------------------------------EecCCccCeEEEEEe
Q 002502 198 --DKPYLITGSDDHTAKVWDYQTKS---CVQ----------------------------------TLEGHTHNVSAVCFH 238 (915)
Q Consensus 198 --~~~~l~~~~~dg~i~iwd~~~~~---~~~----------------------------------~~~~~~~~v~~v~~~ 238 (915)
....+++++.|++|++||+..+. ..+ ..-.....+.+++.+
T Consensus 389 clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS 468 (1080)
T KOG1408|consen 389 CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS 468 (1080)
T ss_pred cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC
Confidence 01158999999999999987521 110 000123358999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecC---CCeEEEEecCCeEEEecCCCcceeEEcCCCcEE
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS---SRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~---~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~ 315 (915)
|+|++|++|...|.+++|++...+....+..|...|.|+.|+.- .++||+++.|..|.++..... .
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----------y- 537 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN----------Y- 537 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc----------c-
Confidence 99999999999999999999999999999999999999999863 578899999999888421110 0
Q ss_pred EEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC--CEEEEEcCCcEEEEEeec----cc----
Q 002502 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG--RFVVVCGDGEYIIYTALA----WR---- 385 (915)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g--~~lav~~~~~~~i~~~~~----~~---- 385 (915)
.....+..+...++++.|--+| .....|+-.+.+.|+... .+
T Consensus 538 ----------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 538 ----------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred ----------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 0112234556677888888777 566666644444454332 11
Q ss_pred ---ccCccceeEEEEecCCcEEEEec-CCeEEEeccCcce-eeeeec-----------CcccceeecCcEEEEeeCC-eE
Q 002502 386 ---NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE-KRSVRP-----------TFSAERIYGGTLLAMCSND-FI 448 (915)
Q Consensus 386 ---~~~~~~~~~~~~s~dg~~l~~~~-~~~v~v~~~~~~~-~~~~~~-----------~~s~~~i~~g~~La~~~~~-~i 448 (915)
....+...+++..|..+++++++ |..|+||+++... .+.++- ...|. |-+||+...| ++
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl 665 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTL 665 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC----ccEEEEeecCCce
Confidence 11235567888899999999888 8999999965322 222322 33444 7789888777 99
Q ss_pred EEEeccCCcEEEEEec---cccEEEEcCCCCEEEEEeCCeEE-EEEecHH
Q 002502 449 CFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFY-ILKYNRD 494 (915)
Q Consensus 449 ~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~-~~~~~~~ 494 (915)
+|||..+|+++.+..+ -|+.+.|.+|.+.|++++.|+.+ +|....+
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999999988775 68999999999998888766655 5554443
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=230.28 Aligned_cols=245 Identities=20% Similarity=0.309 Sum_probs=220.4
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
..+.+..+.++|+.+.|+-+|++.++++.|.+|++||...+..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC--CCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.++ +..+.+.+|...|..+.|+. +...+++|+.|.++++||.++ .+|++.+......|.++..+. . .|++|+
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--h--eIvaGS 162 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--H--EIVAGS 162 (307)
T ss_pred ccC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--c--EEEeec
Confidence 999 88889999999999999998 889999999999999999875 567888888888999998853 2 599999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccE--EEEEEecCCC
Q 002502 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSR 284 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~s~~~~ 284 (915)
.||+++.||++.|+.....- ..+|++++|+++++..++++.|+++++.|-.+|+++..+.+|...- ...+++....
T Consensus 163 ~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999999999998765543 5689999999999999999999999999999999999999886543 3456777778
Q ss_pred eEEEEecCCeEEEecCC
Q 002502 285 RIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 285 ~l~~g~~dg~v~i~~~~ 301 (915)
.+++|++||.+.+|..-
T Consensus 241 hV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLV 257 (307)
T ss_pred eEEeccCCceEEEEEec
Confidence 99999999999998433
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.4e-30 Score=236.44 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=245.2
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002502 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
.++||..+++.+.++.+|.+|.+++.|..+.||-..+|+.+-++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCC------ceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
+.+..++. ..+|..+.|+++|++++.++++ +.|.++|++.. ..+...+..+.+.++.+.|.| -+..|
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 99999884 6689999999999988877653 78999999832 244555666778899999999 88999
Q ss_pred EEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002502 159 ASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 237 (915)
++|..||.|.+||++++.. +.....|...|+.++++++.. ++++++.|.+-++||..+-++++++. ...+|.+.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--eEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 9999999999999999754 444567889999999999887 89999999999999999999999887 5678999999
Q ss_pred eCCCCEEEEEEcCCe--E------------EEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 238 HPELPIIITGSEDGT--V------------RIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~--v------------~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+|....++.|+.... | ++|++-..+.+..+++|.++|.+++|+|+|+..++|+.||.|++.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 998777776653222 1 122222223455678899999999999999999999999999984
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=277.22 Aligned_cols=282 Identities=25% Similarity=0.444 Sum_probs=242.5
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 133 (915)
+...|.++.|+++|+.+++++.++.+++|+..+++ ....+.+|...|.+++|+|++.++++++.|++|++||+.....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 36789999999999999999999999999997777 6777789999999999999999999999999999999955557
Q ss_pred EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEE
Q 002502 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 134 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
..+++.+|...|++++|+| .++.+++|+.|++|++||++++++...+.+|..+|++++|++++. +|++++.|+.|++
T Consensus 238 ~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~--~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN--LLVSASYDGTIRV 314 (456)
T ss_pred EEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC--EEEEcCCCccEEE
Confidence 8899999999999999999 669999999999999999999999999999999999999999988 7999999999999
Q ss_pred EECCCCc--EEEEecCCccC--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCcc---EEEEEEecCCCeE
Q 002502 214 WDYQTKS--CVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAIGYMKSSRRI 286 (915)
Q Consensus 214 wd~~~~~--~~~~~~~~~~~--v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i~~s~~~~~l 286 (915)
||+.++. ++..+..+... +++++|+|++.++++++.|+.+++||+..+.....+..+... +.+...++.+.++
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 9999998 56777766555 999999999999999999999999999999998888887653 4455668899999
Q ss_pred EEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCc-ccCCceEEECCCC
Q 002502 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC-DLYPQSLKHNPNG 365 (915)
Q Consensus 287 ~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~s~~g 365 (915)
++|+.|+.|.+|....... +. .+..+ ...+..+.++|..
T Consensus 395 ~sg~~d~~v~~~~~~s~~~------------------------------------~~----~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSGGI------------------------------------LQ----RLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred EEEeCCceEEEEeCCccch------------------------------------hh----hhcCCCCCceeccccCCCc
Confidence 9999999999974332111 10 01222 3455677888888
Q ss_pred CEEEEEc---CCcEEEEE
Q 002502 366 RFVVVCG---DGEYIIYT 380 (915)
Q Consensus 366 ~~lav~~---~~~~~i~~ 380 (915)
.+++..+ |+.+.+|.
T Consensus 435 ~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWK 452 (456)
T ss_pred CeeeecCcCCCceEEEec
Confidence 8888776 67777774
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.2e-29 Score=231.22 Aligned_cols=279 Identities=17% Similarity=0.263 Sum_probs=246.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEE--EEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVAR-KQWVVAGADDMFIRVY 84 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vw 84 (915)
.+.+.+|...|.+++|+.+|..|++|+.|+++.+|++......+. ..+|.+.|-.++|+|. .+.+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 377889999999999999999999999999999999988765544 4578889999999884 5789999999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
|..++++...+....+.| -+.|+|+|.++++++.|..|...|.++. +..... .....+.-++|+- ++++|+..+..
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeehh-cccceeeeeeecC-CCCEEEEecCC
Confidence 999999998887655544 4899999999999999999999999886 333322 2345577888985 78888888888
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 244 (915)
|.|.|.....-+++..++.|.....|+.|+|+|+ |+++|+.|..+.+||+...-|++.+..+.-+|..+.|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCC
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg 293 (915)
+++|+|..|-|=++.+|..+..++.. ++..+++|+|...+||.+++|.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccCccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999988755 7889999999999999888764
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.1e-28 Score=290.89 Aligned_cols=259 Identities=17% Similarity=0.279 Sum_probs=219.1
Q ss_pred CCeEEEEECCCCceeEEE-----EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----c----eeEEEecCCCCE
Q 002502 36 SGTVCIWNYQSQTMAKSF-----EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----D----KVKVFEAHTDYI 102 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~----~----~~~~~~~~~~~i 102 (915)
+|.+++|+..+......+ ..|...|.+++|+|+|++|++|+.|+.|+||+..+. . ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888987765544333 348889999999999999999999999999997542 1 122233 34679
Q ss_pred EEEEEcCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE
Q 002502 103 RCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 103 ~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (915)
.+++|++. +.+|++++.||+|++||+.++ .....+.+|...|.+++|+|.++++|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 679999999999999999987 6677788999999999999867889999999999999999988887777
Q ss_pred ecCCCCeeEEEEEeC-CCcCEEEEEECCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 182 DAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
..+ ..+.++.|.+. +. ++++|+.||.|++||+++++ ++..+.+|...|+++.|. ++.+|++++.|+.|++||+.
T Consensus 615 ~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 644 67899999654 44 89999999999999998765 567788899999999997 67899999999999999987
Q ss_pred C------ceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecC
Q 002502 260 T------YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 260 ~------~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~ 300 (915)
. +..+.++..|...+.+++|+|++++|++|+.||.+.+|..
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 4 3567788888889999999999999999999999999853
No 65
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.3e-27 Score=249.03 Aligned_cols=478 Identities=18% Similarity=0.275 Sum_probs=325.3
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (915)
+..+...+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++..... ..+.+|...+ ++++.......+...|
T Consensus 43 k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~--~cv~a~~~~~~~~~ad 120 (764)
T KOG1063|consen 43 KILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC--VCVVARSSVMTCKAAD 120 (764)
T ss_pred cceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE--EEEEeeeeEEEeeccC
Confidence 3345677899999999999999887 8999999999999999854443 3444444443 3333333323233456
Q ss_pred CeEEEEECCC------------------------------------------------C--ceeEEEecCCCCEEEEEEc
Q 002502 79 MFIRVYNYNT------------------------------------------------M--DKVKVFEAHTDYIRCVAVH 108 (915)
Q Consensus 79 g~i~vwd~~~------------------------------------------------~--~~~~~~~~~~~~i~~l~~s 108 (915)
+.+.+||.+. . +.+..+.+|.+.|++++|.
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 6666666521 1 2345567899999999998
Q ss_pred CCCC---EEEEEEcCCeEEEEECCCCc--------------------eEE----------EEeecCCcceEEEEEecCCC
Q 002502 109 PTLP---YVLSSSDDMLIKLWDWEKGW--------------------MCT----------QIFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 109 ~~~~---~l~~~~~dg~i~iwd~~~~~--------------------~~~----------~~~~~~~~~i~~~~~~p~~~ 155 (915)
..+. +|+++|.|..|+||.+.-+. .+. ..+.+|...|+++.|+| .+
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~ 279 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EG 279 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-ch
Confidence 7554 78899999999999764221 111 12348999999999999 77
Q ss_pred CEEEEEECCCcEEEEECCCCCCceE-------EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC---cEEEEe
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTL 225 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~ 225 (915)
..|++++.|.++.+|......-+.. +.+...+.....|+|+++ .+++-+..|..++|..... .....+
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccceeecccc
Confidence 8899999999999998766532221 223455678899999987 7888899999999984332 234556
Q ss_pred cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC----CceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 226 ~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
.+|...|+.++|+|.|.+|++.|.|.+-|+|-.- +...+..-+.|...+.|+++-+....+++|.++..++++...
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 7899999999999999999999999999998744 122344445677789999999876778889999999885211
Q ss_pred Ccc-----------------------eeEEcCCCcEEEE--eecceE---EEEee--eccc-ceeccCCcee-----eee
Q 002502 302 EEP-----------------------VASMDNSGKIIWA--KHNEIQ---TVNIK--SVGA-DYEVTDGERL-----PLA 345 (915)
Q Consensus 302 ~~~-----------------------~~~~~~~g~~~~~--~~~~i~---~~~~~--~~~~-~~~~~~g~~~-----~~~ 345 (915)
..- +..+--+.+.++. ...... .+... .... ...-+..+.+ -..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 100 0011111122221 000000 00000 0000 0000000000 011
Q ss_pred eeecCCcccCCceEEECCCCCEEEEEc------CCcEEEEEeeccccc-----CccceeEEEEecCCcEEEEec-CCeEE
Q 002502 346 VKELGTCDLYPQSLKHNPNGRFVVVCG------DGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSKIK 413 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~s~~g~~lav~~------~~~~~i~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~v~ 413 (915)
...+-.|...+.+++.||+|.++|++. ...|++|....|... +.-.++.++|||||+||++.+ |.++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 223455677889999999999999886 356889999988644 345789999999999999988 89999
Q ss_pred EeccC-----------cceeeeeec--CcccceeecCcEEEEeeCC-eEEEEeccCC--cEEEEE-----eccccEEEEc
Q 002502 414 IFSKN-----------FQEKRSVRP--TFSAERIYGGTLLAMCSND-FICFYDWAEC--RLIRRI-----DVTVKNLYWA 472 (915)
Q Consensus 414 v~~~~-----------~~~~~~~~~--~~s~~~i~~g~~La~~~~~-~i~~~d~~~~--~~i~~~-----~~~i~~v~~s 472 (915)
+|... .+.+..+.+ .|+|+ +.++++++.| +|.+|..... +.+.++ ...|+.++|.
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 99743 123333333 88998 8889999999 9999998877 444432 2478888877
Q ss_pred C-----CCCEEEEEeCCeEEEEE
Q 002502 473 D-----SGDLVAIASDTSFYILK 490 (915)
Q Consensus 473 ~-----dg~~la~~~~~~~~~~~ 490 (915)
+ .+..|+.+-+.+.+++|
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred ccccccccceEEEEecccEEEEE
Confidence 5 23367777777766655
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.1e-30 Score=253.99 Aligned_cols=284 Identities=21% Similarity=0.344 Sum_probs=250.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..++|+++.|.++++.+++.+.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 456678899999999999998899999999999999987765 677888888999999999999999999999999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (915)
++...+...++.+|++.|+++.|......+++|+.|.+|++||+... .+.+..... ..+..++.+ ...+++|..|
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~~-S~cnDI~~~---~~~~~SgH~D 321 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLPG-SQCNDIVCS---ISDVISGHFD 321 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-heecccccc-ccccceEec---ceeeeecccc
Confidence 99999999999999999999999988877999999999999999986 454443322 335566654 4678999999
Q ss_pred CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC----ccCeEEEEEeCC
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHPE 240 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~ 240 (915)
++|++||+++..+......+. .|+++..++++. -+++++.|.++.+.|+++......+... ....+.+.|||+
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cceEEEeccCCceeeEeecCc-ceeeEeeccCCe--EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 999999999999888887655 899999999988 4888899999999999998887777542 234889999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCceeeeeeccCCcc--EEEEEEecCCCeEEEEecCCeEEEe
Q 002502 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLER--VWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+.|+++||.||.|+||++.++++...+...... |++++|+|.|..+++++.++.+.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999999999999999999888876555 9999999999999999999999987
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-27 Score=228.53 Aligned_cols=290 Identities=18% Similarity=0.285 Sum_probs=248.5
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC--CCeE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i 81 (915)
++++.+.+..-.+.|.++.|+++|.+|++++.|..++|||..+++.++++..++-.|..+.|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 46677788888999999999999999999999999999999999999999988888999999988888888777 8899
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++.. .+...+..... ..++|.| .|-+||++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp-~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDP-EGLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECC-CCcEEEEe
Confidence 99999999999999999999999999999999999999999999999965 44444443333 3578999 88899999
Q ss_pred ECCCcEEEEECCCC--CCceEEe---cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCe---E
Q 002502 162 SLDRTIKIWNLGSP--DPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV---S 233 (915)
Q Consensus 162 ~~dg~i~i~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~ 233 (915)
.....|++||+++- .+..++. ......+.+.|+|+|+ +++.+...+.+.+.|.-+|..+.++..+...- .
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88889999999864 3444443 3467789999999998 89999999999999999999988887765432 5
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc-CCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 234 ~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
..+|+||++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-.+++++ +..+.+|+..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 778999999999999999999999999999999888 47889999999986665554 5567777544
No 68
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.9e-29 Score=259.26 Aligned_cols=273 Identities=20% Similarity=0.331 Sum_probs=245.6
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec-C
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-H 98 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~ 98 (915)
-++|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 36788 455788887 45799999999987776666688999999999999999999999999999999999999988 9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc
Q 002502 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (915)
...|-+++|+ +..+.+|+.+|.|..+|++........+.+|...|+.+.|++ +++++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 567999999999999999987555556888999999999999 9999999999999999999999999
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEE--CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE--EcCCeEE
Q 002502 179 FTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVR 254 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~--~~dg~v~ 254 (915)
..+..|...|..++|+|-..+ +|++|+ .|+.|++||..++..+..+. ....|+++.|++..+-|+++ ..++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999998765 788875 58999999999999998887 56779999999998766654 4567899
Q ss_pred EEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999999999999999999999999999999999999999984
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.6e-29 Score=227.07 Aligned_cols=279 Identities=25% Similarity=0.367 Sum_probs=234.0
Q ss_pred EEEEEcCC-CCEEEEEE-------cCCeEEEEECCCCceeEEEEe--cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002502 19 KSVDLHPS-EPWILASL-------YSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 19 ~~~~~sp~-~~~la~~~-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~ 87 (915)
.++.|||- .++||++. .+|++.|.++....-+..+.. -...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889993 33455442 378999999865444444332 45679999999965 567888999999999964
Q ss_pred -CCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 88 -TMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 -~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
...++..++.|...|.++.|++.. ..++++|.||+|++|+...+ ...+++.+|...|....|+|..++.|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 235678889999999999999854 46778899999999999877 667789999999999999999999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCC-CE
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PI 243 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~~ 243 (915)
++++||++.......+..|...+.|+.|+..... ++++|+.|+.|+.||+++ ..++..+.+|.-.|..+.|||.. .+
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999887666678999999999999987654 899999999999999997 45788899999999999999965 58
Q ss_pred EEEEEcCCeEEEEeCCCc-eeeeeeccCCccEEEEEEecC-CCeEEEEecCCeEEEec
Q 002502 244 IITGSEDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~s~~-~~~l~~g~~dg~v~i~~ 299 (915)
|++++.|-+++|||...+ ..+.+...|..-+..+.|++- +..+|..+-|+.+.||.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 899999999999998744 466777788888999999884 67899999999999984
No 70
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.7e-28 Score=251.29 Aligned_cols=716 Identities=16% Similarity=0.160 Sum_probs=434.7
Q ss_pred CchhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002502 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~ 80 (915)
..+.+.++|.||++.|.-+.|+...+.|-+...+|.|.||-+-.|....... -.++.|.+++|+.+|..++..-.||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 4567888999999999999999999999999999999999987775443322 24567999999999999999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce------E----EEEeecCCcceEEEEE
Q 002502 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------C----TQIFEGHSHYVMQVTF 150 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~----~~~~~~~~~~i~~~~~ 150 (915)
|.|=.++. ..+.--.-.......+.|++|...++.+-.+|.+.+||...... + ...+......|-.+.|
T Consensus 139 vIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeecc-ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 99888764 33322111122345789999999888888899999999775411 1 1112223344667777
Q ss_pred ec-------CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECC---------CeEEEE
Q 002502 151 NP-------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---------HTAKVW 214 (915)
Q Consensus 151 ~p-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iw 214 (915)
.. .+...|+++..+|.+.+..-.+......+. ..-.+....|+++|. +|++++.+ +.|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCc--EEEEccCcccccCccccceEEEe
Confidence 52 266789999999998887544433333333 336678899999988 78887754 356676
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce--------eeeeeccCCccEEE----------
Q 002502 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--------LENTLNYGLERVWA---------- 276 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~---------- 276 (915)
.. -|+.+.+++.....|++++|-..|-.++.+- |+.|.+=+++..- .+...+....+-.+
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 64 4888889998889999999998887776654 6677766654211 11111111111122
Q ss_pred -----------EEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeee
Q 002502 277 -----------IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLA 345 (915)
Q Consensus 277 -----------i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~ 345 (915)
++++.+--.|+.-.++|.+.-. ..+..-++ +.+..+-+ +-|..+
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~-------s~le~~~~--------~~~l~LCN-------SIGT~l--- 427 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEY-------STLENRSR--------VYFLQLCN-------SIGTSL--- 427 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcch-------hhhhcccc--------eEEEeeec-------ccCCcC---
Confidence 2222222222222222221110 00000000 00111000 001111
Q ss_pred eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccccc------------C-------------------------
Q 002502 346 VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR------------S------------------------- 388 (915)
Q Consensus 346 ~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~------------~------------------------- 388 (915)
...-..++.....-+|..+++++...+.+|.....+.. .
T Consensus 428 ----D~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~ 503 (1189)
T KOG2041|consen 428 ----DYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS 503 (1189)
T ss_pred ----CCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC
Confidence 11112233444555778899999999999954332100 0
Q ss_pred ccceeEEEEecCCcEEEEecCCeEEEeccCcceeeeeecCcccc--eee---cCcEEEEeeCC-eEEEEecc---CCcEE
Q 002502 389 FGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAE--RIY---GGTLLAMCSND-FICFYDWA---ECRLI 459 (915)
Q Consensus 389 ~~~~~~~~~s~dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~--~i~---~g~~La~~~~~-~i~~~d~~---~~~~i 459 (915)
..++..++.| |.-+++...+|.|+-|++.......-. ..+|. .+. +...||+-.-- .+.|.|+. +|..+
T Consensus 504 ~DpICAl~~s-dk~l~vareSG~I~rySl~nv~l~n~y-~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql 581 (1189)
T KOG2041|consen 504 KDPICALCIS-DKFLMVARESGGIYRYSLNNVVLTNSY-PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQL 581 (1189)
T ss_pred CCcceeeeec-ceEEEEEeccCceEEEEecceeeeecc-ccCchheeEeeccCcchhhhhhhhceeeeeecccccCccee
Confidence 0112223222 223344444788888776543332211 11111 111 24455554433 66677765 45544
Q ss_pred EEEe----ccccEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCE
Q 002502 460 RRID----VTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDC 534 (915)
Q Consensus 460 ~~~~----~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~ 534 (915)
.-+- -.|+.+.|..|. .++|...+..+++++-| +..+++...|+.+.|+.+. |++...+ ++
T Consensus 582 ~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn--------dpeEp~s~sGyIc~FedLe-----itsVlld-~I 647 (1189)
T KOG2041|consen 582 KLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN--------DPEEPSSVSGYICLFEDLE-----ITSVLLD-KI 647 (1189)
T ss_pred eeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc--------CccccccccceEEEeeceE-----EEEEEHh-hH
Confidence 4222 379999999665 46677888888888633 3456677788888887762 3333222 22
Q ss_pred EEEEccCCeEEEEECCEEeEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhc---
Q 002502 535 FIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL--- 611 (915)
Q Consensus 535 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l--- 611 (915)
+. +++.....+.+... +..++..+.++....-.....++.++.+...|.+ .-..++.+.+++.|+..+
T Consensus 648 l~-~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLWrl-----lAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 648 LL-TPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRL-----LAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred hc-CcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHH-----HHHHHHHHHhhhhHhhhhhhh
Confidence 22 23333333433222 2333332222211111222333333333332222 224566666777765433
Q ss_pred ------------CCCCcchH--HHHHHHHHhCCChhhhhhcccCc---cceeeeecccCCHHHHHHHHHHcCC-------
Q 002502 612 ------------PSIPKEHH--NSVARFLESRGMIEEAIEVATDP---DYRFELAIQLGRLEVAQEIATEVQS------- 667 (915)
Q Consensus 612 ------------~~i~~~~~--~~~~~~~~~~~~~~~al~~~~~~---~~~f~~~l~l~~~~~A~~~a~~~~~------- 667 (915)
++|-.... ..+..| .|..++|-...-|+ +.+.+|++++|+|-..+++.+....
T Consensus 719 ~dY~Gik~vkrl~~i~s~~~q~aei~~~---~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~ 795 (1189)
T KOG2041|consen 719 GDYAGIKLVKRLRTIHSKEQQRAEISAF---YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGK 795 (1189)
T ss_pred ccccchhHHHHhhhhhhHHHHhHhHhhh---hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHH
Confidence 22211111 223333 35556665555444 4457999999999999999987432
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH--------------HHHHHHHHHHHcCCchHHHHHH
Q 002502 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE--------------GISKLASLAKEQGKNNVAFLCL 733 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~--------------~~~~l~~~~~~~~~~~~a~~~~ 733 (915)
+..|+.+|+......+++.|.++|.+++|..+.+-+|....+.+ .+..++++....|++.+|..+|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 45788888888888888888888888877776666665544444 4556788889999999999999
Q ss_pred HHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhc
Q 002502 734 FMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (915)
Q Consensus 734 ~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~ 781 (915)
+..++...|+..+...+||.+|+++|+.+...++..++.+.+..|...
T Consensus 876 Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 876 LRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988887777643
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.9e-28 Score=222.64 Aligned_cols=296 Identities=18% Similarity=0.255 Sum_probs=239.8
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.+.+|+.|++.+.++.+|.+|++++.|....||-..+|+.+.++.+|.+.|+|++.+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEEC-----CCcEEEEECC-------CCCCceEEecCCCCeeEEEEEeCCCc
Q 002502 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----DRTIKIWNLG-------SPDPNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
+....+. ...+|..+.|++ ++++++.++. .+.|.++|++ +.++...+..+...++.+-|.|.++
T Consensus 85 -k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 85 -KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE- 160 (327)
T ss_pred -cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-
Confidence 4444444 457799999999 7887777654 3569999997 4567788888899999999999888
Q ss_pred CEEEEEECCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEE
Q 002502 200 PYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
+|++|..+|.|.+||.++|. .+.+.+.|...|+.++++|+..++++++.|.+-++||+.+...+.++... .+|.+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 89999999999999999975 56666789999999999999999999999999999999999999988765 7899999
Q ss_pred EecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCce
Q 002502 279 YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQS 358 (915)
Q Consensus 279 ~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 358 (915)
++|....++.|+.....-+...... .|+.- -+.++ +.-. -.+.....+-.++.+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r-------~GKFE------ArFyh---------~i~e----EEigrvkGHFGPINs 292 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTR-------AGKFE------ARFYH---------LIFE----EEIGRVKGHFGPINS 292 (327)
T ss_pred cccccceEEecCCceeeeeeeeccc-------ccchh------hhHHH---------HHHH----HHhccccccccCcce
Confidence 9999888888776554444110000 00000 00000 0000 012223567778889
Q ss_pred EEECCCCCEEEEEc-CCcEEEE
Q 002502 359 LKHNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 359 l~~s~~g~~lav~~-~~~~~i~ 379 (915)
++|+|+|+..++++ ||.+++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 99999998888888 7777765
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=9.9e-29 Score=248.45 Aligned_cols=288 Identities=21% Similarity=0.358 Sum_probs=236.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----eeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (915)
..+|.+|+..|.++++.|.|-.|++|+.|..|++||+.... ..+.+. .....|+++.|++.|..|++.+...+.+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678999999999999999999999999999999987542 122232 2345799999999999999999999999
Q ss_pred EEECCCCceeEE------------EecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEee-----cCCcc
Q 002502 83 VYNYNTMDKVKV------------FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHY 144 (915)
Q Consensus 83 vwd~~~~~~~~~------------~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~ 144 (915)
|+|-...+.... -++|...++|.+|+|..+ .+++++.||++++||+.......+++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999765444332 247889999999999764 688999999999999987655555544 23456
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCC--CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC
Q 002502 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+++++|+| ++..|++|+.||+|.+|+..+.... ..-..|.. .|+|+.|+++|+ +|++-+.|+++++||++..
T Consensus 320 ~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence 89999999 8999999999999999998654322 22346666 899999999998 8999999999999999874
Q ss_pred -cEEEEecCC--ccCeEEEEEeCCCCEEEEEEc------CCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 220 -SCVQTLEGH--THNVSAVCFHPELPIIITGSE------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 220 -~~~~~~~~~--~~~v~~v~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
+++....+. ..+-+.++|||+.++|++|+. .|.+.+||..+...+..+......|..+.|+|.-+.|.+|+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 455555443 334678899999999999863 46899999999999999998889999999999999999999
Q ss_pred cCCeEEEe
Q 002502 291 DEGTIMVK 298 (915)
Q Consensus 291 ~dg~v~i~ 298 (915)
.||.+.++
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999985
No 73
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.5e-29 Score=243.84 Aligned_cols=285 Identities=18% Similarity=0.299 Sum_probs=243.0
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
+.-.|.||.++|.|++=+|.. ..+|+|+.||.|+|||+.+..+..++..|.+.|+.+++.. ..++++++|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999987 6899999999999999999999999999999999999987 6788999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
+.. ...+++.+ .+.+..+.-+..+..+++|+. .|.|||.... .+.+.+.-....|.++.|+|...+.|++|..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 875 46666654 445677777777788888887 5999999866 566666666778999999998888999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEE
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l 244 (915)
+|.+||++.+.++.... ....-+.++|+|.+- .+++++.|..++.||++.. .++....+|.+.|.++.|+|.|+-+
T Consensus 211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceee-eeccccceecCcccc--ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 99999999999887765 334458999999655 5889999999999999874 5788888999999999999999999
Q ss_pred EEEEcCCeEEEEeCCCceeeeeec-cCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
++||.|.+|+||..+.+..-..+. .....|.++.||.|.+++++|++|+.|++|-+.
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999988766443332 234689999999999999999999999999543
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=2.2e-29 Score=252.17 Aligned_cols=251 Identities=18% Similarity=0.325 Sum_probs=216.1
Q ss_pred CceeEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEE
Q 002502 47 QTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 124 (915)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356778899999999999999 889999999999999999876 889999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002502 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
+||.++| .+...+. ....+.|+.|+|++.+.|++|+.|+.|+.||+++++.+..+..|-+.|..+.|.+++. .+++
T Consensus 284 lwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~--rFis 359 (503)
T KOG0282|consen 284 LWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR--RFIS 359 (503)
T ss_pred eeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc--eEee
Confidence 9999999 5555554 3456899999996669999999999999999999999999999999999999999988 6999
Q ss_pred EECCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce---eeeeeccCC--ccEEEEE
Q 002502 205 GSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---LENTLNYGL--ERVWAIG 278 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~--~~v~~i~ 278 (915)
.++|+.++||+.+.+-++..+. .......++..+|+++++++-+.|+.|.++.+...- ....+.+|. +.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999998876655433 234457789999999999999999999999865321 223344442 4456789
Q ss_pred EecCCCeEEEEecCCeEEEecCC
Q 002502 279 YMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 279 ~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
|||||.+|++|..+|.+.+|..+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred EcCCCCeEEeecCCccEEEeech
Confidence 99999999999999999998533
No 75
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=5.2e-25 Score=221.26 Aligned_cols=413 Identities=18% Similarity=0.343 Sum_probs=300.0
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCce
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--------FIRVYNYNTMDK 91 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--------~i~vwd~~~~~~ 91 (915)
.+-+-|.|..+.... +.+.+|+++.. ..+.+.+|...|.|+..+|+.-.+++|...| .+++||..+...
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 355667777555432 45667776443 3355778999999999999998898875544 599999888888
Q ss_pred eEEEecCCCCEEEEEEcCC--CCEEEEE--EcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 92 VKVFEAHTDYIRCVAVHPT--LPYVLSS--SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+..+..-...|.|++|++. |.+|+.. +.+..+.+||+..+.. .......+..|....|+|.+.+++++++ .|.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVKTSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-cCcceeccceEEEEEeccCCCcEEEEeC-CceE
Confidence 8888777778999999984 4455443 3456789999987733 3333445566889999998888888876 5889
Q ss_pred EEEECCCCCCceEE---e-cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002502 168 KIWNLGSPDPNFTL---D-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 168 ~i~d~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 243 (915)
.+|+++++....+. . ..+..|.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++.-.+|.+
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 99999887655433 2 2236799999999998 999999999999999888877777799999999999999965
Q ss_pred EEEEEcCCeEEEEeCCCceeeeee--ccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecc
Q 002502 244 IITGSEDGTVRIWHATTYRLENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (915)
| +|+.|..|..|| .+.+.++.. ....+++..++-...+ |.+|+....|..- .
T Consensus 302 l-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~G------------------t---- 355 (626)
T KOG2106|consen 302 L-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQG------------------T---- 355 (626)
T ss_pred e-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEe------------------e----
Confidence 5 599999999999 656655443 3445677777654333 6677766555431 0
Q ss_pred eEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee--cccccCccceeEEEEe
Q 002502 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL--AWRNRSFGSALEFVWS 398 (915)
Q Consensus 322 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~--~~~~~~~~~~~~~~~s 398 (915)
+.++-.+.. .++.+ ..-.++.+|+...+++|+ ++.+.+|+-. .|......++.++.|.
T Consensus 356 --------------~~~~f~~~v----~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 356 --------------LENGFTLTV----QGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred --------------ecCCceEEE----Eeccc-ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 111111100 01111 345788888888788777 9999999722 2444455678899999
Q ss_pred cCCcEEEEec-CCeEEEeccCcceeeeeec--------CcccceeecCcEEEEeeCC-eEEEEecc-CCcEEEEEe----
Q 002502 399 SDGEYAVRES-SSKIKIFSKNFQEKRSVRP--------TFSAERIYGGTLLAMCSND-FICFYDWA-ECRLIRRID---- 463 (915)
Q Consensus 399 ~dg~~l~~~~-~~~v~v~~~~~~~~~~~~~--------~~s~~~i~~g~~La~~~~~-~i~~~d~~-~~~~i~~~~---- 463 (915)
|.| .++.+. .|...|.|.+.+...++.. .|+|+ |.+||+++.| .|++|.++ +|..+.+..
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 999 666665 7888888865443322221 78898 9999999999 99999986 445444433
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 464 VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|+.+.||+|+++|.+.+.|.-+.+|
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEE
Confidence 389999999999999999988777776
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=250.66 Aligned_cols=776 Identities=16% Similarity=0.145 Sum_probs=441.4
Q ss_pred CCCchhhhhhcccCCCCEEEEEEcCCCCEEEEEEc----CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002502 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (915)
|.+.++.+..+....+.-+-.+|||..+++|+++- .|.|.||- ++|++.+... .+-.+++++|+|..-.|+.|.
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhcc
Confidence 44555555555544444556789999999999874 68999997 6776544332 222356799999999999999
Q ss_pred CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceE-EEEeecC--------------
Q 002502 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC-TQIFEGH-------------- 141 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-------------- 141 (915)
.-|.+.+|..++.+.......|+.+|..+.||++|..++++..-|.+.+|........ ...+..|
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 9999999999887777777789999999999999999999999999999987621000 0000000
Q ss_pred -----------------CcceE-EEEE-------------ecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002502 142 -----------------SHYVM-QVTF-------------NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 142 -----------------~~~i~-~~~~-------------~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 190 (915)
...+- -.-| .| ++..|+.++.+|+|+..|-. +......+.. +.| .
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d-S~v-Q 234 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD-SEV-Q 234 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCC-CcEEEEEEcc-chH-H
Confidence 00000 0011 12 56677888888888777743 3322222111 100 0
Q ss_pred EEEEeCCCcCEEEEEECCCeEEEEEC----------------CC-------------C----cEEEEecCCccCeEEEEE
Q 002502 191 VDYFTGGDKPYLITGSDDHTAKVWDY----------------QT-------------K----SCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~----------------~~-------------~----~~~~~~~~~~~~v~~v~~ 237 (915)
+-|.+... .+++.-.+-++.++-. +. | .....+ .....+.|+++
T Consensus 235 mLf~~~~e--ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY 311 (1416)
T KOG3617|consen 235 MLFMGYCE--AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCY 311 (1416)
T ss_pred HHHhcccc--eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEE
Confidence 11111111 1111111111111110 00 0 000011 13456999999
Q ss_pred eCCCCEEEEEEcCCeEEEEeCCCc-------eeeeeecc---CCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeE
Q 002502 238 HPELPIIITGSEDGTVRIWHATTY-------RLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~---~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~ 307 (915)
+..+..++.|...|.+.+|--.+. .-..+++. ..+.|..+.|.|-.+.+++.+....+.+. +.+..+
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~ 388 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTV 388 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHH
Confidence 999999999999999999963322 22333433 34679999999988888887777666652 222111
Q ss_pred EcCCCcE--EEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc
Q 002502 308 MDNSGKI--IWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR 385 (915)
Q Consensus 308 ~~~~g~~--~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~ 385 (915)
... ++. +....+.+....- .+|..- .-..++.+..++.+. .-|+++....+.+|+++...
T Consensus 389 ~h~-~~~~A~q~ss~S~~L~hc---------~sGv~~------~l~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG 450 (1416)
T KOG3617|consen 389 KHR-GKMAAIQTSSNSFTLLHC---------TSGVSQ------DLKLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSG 450 (1416)
T ss_pred HHh-hhhHHhhhcCCceEEEee---------ccchhh------hhhhccchhhheecc--ceEEEEcCceEEEEEecccc
Confidence 110 111 0111122211111 011100 012233445555555 45888889999999886321
Q ss_pred ccCccce-----eEEEEecCCcEEEEecCCeEEEeccCcceeeeeec-Ccccceee---cCcEEEEeeCC-eEEEEeccC
Q 002502 386 NRSFGSA-----LEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWAE 455 (915)
Q Consensus 386 ~~~~~~~-----~~~~~s~dg~~l~~~~~~~v~v~~~~~~~~~~~~~-~~s~~~i~---~g~~La~~~~~-~i~~~d~~~ 455 (915)
....... .+.+..--++-+.+..++.|.++.+.......+.. ......+. .|.+|++.+.. .+.-||+..
T Consensus 451 ~la~~~~~tF~cet~~la~~nqN~ycies~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr 530 (1416)
T KOG3617|consen 451 SLATIQCTTFSCETTSLAIVNQNLYCIESDKVFVRTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSR 530 (1416)
T ss_pred hhHHHhhhhhccccchHhHhhcceEEeccCcEEEEecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhh
Confidence 1110011 11111112233334444556665544332222221 11111111 36788877766 555566543
Q ss_pred CcEE--E---------EEeccccEEEEcCCCCEEEE--Ee-----CCeEEEEEecHHHHHH--hhhCCCCCCccccccce
Q 002502 456 CRLI--R---------RIDVTVKNLYWADSGDLVAI--AS-----DTSFYILKYNRDVVSA--YLDSGKPVDEQGVEDAF 515 (915)
Q Consensus 456 ~~~i--~---------~~~~~i~~v~~s~dg~~la~--~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f 515 (915)
.++- . .-.+.+..+..+.+|..+.+ +. -+.++.|+|.+..+.. .++++.....++..
T Consensus 531 ~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~t--- 607 (1416)
T KOG3617|consen 531 AELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESST--- 607 (1416)
T ss_pred hcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCccccccccccC---
Confidence 3221 1 11135666777766654322 22 2457788887665543 22221111111110
Q ss_pred eEeEeeeeeEEeeEEecCEEEEEccCCeEEEEE----CCEEe-EEEecc------cceEEEEEEeeCC-EEEEEe--cCC
Q 002502 516 ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCV----GGEVT-TMFHLD------RPMYLLGYLASQS-RVYLID--KEF 581 (915)
Q Consensus 516 ~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~----~~~~~-~~~~~~------~~~~~~~~~~~~~-~l~~~d--~~~ 581 (915)
.....+.|+. +..++..+- .++.. .-..+. ..+.++.++.+.. .+.+.. ...
T Consensus 608 -------s~pvr~fWD~-------~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~ 673 (1416)
T KOG3617|consen 608 -------SPPVRFFWDE-------NEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKN 673 (1416)
T ss_pred -------CCCceeeecC-------CCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccCC
Confidence 0111233443 222221110 00000 000000 0111222111111 111110 000
Q ss_pred ceEEEEecchHHHHHHHHHccCHHHHhhhc--CCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHH
Q 002502 582 NVMGYTLLLSLIEYKTLVMRGDLERANEIL--PSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQ 659 (915)
Q Consensus 582 ~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l--~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~ 659 (915)
..-.--+...++.|-. .|+.-|+-..-. ++|+. ...++-|...-..+.+.+.++++.+.|.+++..|++|.|+
T Consensus 674 ~~~~~Ll~~~VPn~yf--vRk~~~d~ed~~ee~~i~~---~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~Af 748 (1416)
T KOG3617|consen 674 LHCGKLLSVSVPNFYF--VRKSGWDEEDNREERTIGK---TLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAF 748 (1416)
T ss_pred CCccceeeeecCceEE--Eecccccccccccccccch---hhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHH
Confidence 0000001223333211 122222211000 11222 2345566666667778888899999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH-HHHHHHHHHHHHcCCchHHHHHHHHcCC
Q 002502 660 EIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA-EGISKLASLAKEQGKNNVAFLCLFMLGK 738 (915)
Q Consensus 660 ~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~-~~~~~l~~~~~~~~~~~~a~~~~~~~g~ 738 (915)
+.++.++++..|..+|.+|++..++++|..|+..+++..++.-|.+...+. +.-.+.|-+|..-|+...|..+|.+..+
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888876555 5556889999999999999999999999
Q ss_pred HHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhh--------------------------cChhhhhhcCCC
Q 002502 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQK--------------------------VNPKAAESLADP 792 (915)
Q Consensus 739 ~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~--------------------------~~~~~a~~l~~~ 792 (915)
+|---++|...|+|++|+++|.+.-.-++..-.=.+.++|.. -+++.-+++...
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 999999999999999999999876553333333333333321 122333444444
Q ss_pred ccCCCccccHHHHHHHHHHHhhccCCCCCCcccccc
Q 002502 793 EEYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNH 828 (915)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 828 (915)
...+.|+..|++.+|..|+++.|..-|..|+||-+.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 567789999999999999999999999999999664
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=241.61 Aligned_cols=276 Identities=19% Similarity=0.384 Sum_probs=237.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCcee----EE-------------E-EecCCCEEEEEEeCCC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA----KS-------------F-EVTELPVRSAKFVARK 69 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~s~~~ 69 (915)
.+.+..|.-+|.||+++|+++++++++.+|+|.-|++.++... .. - +.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3556789999999999999999999999999999999887532 11 0 2567789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEE
Q 002502 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 149 (915)
++|++|+.|..|.||+..+++.++.+.+|.+.|.+++|-.....|++++.|++|++|+++.. ....++.+|...|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999988888999999999999999976 66778889999999998
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC--
Q 002502 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-- 227 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 227 (915)
... ....+.+|+.|+++++|++. ......+.++.+.+.|++|-.+. .+++|+++|.|.+|++.+++++.+...
T Consensus 294 aL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccc
Confidence 876 56677777799999999994 34556778899999999998665 499999999999999998888776542
Q ss_pred ----------CccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc----eeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 228 ----------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 228 ----------~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
+...|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+.|++++|+++|+++++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 1227999999999999999999999999998877 3455555 347899999999999887764
No 78
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.3e-29 Score=239.52 Aligned_cols=228 Identities=27% Similarity=0.495 Sum_probs=206.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|.|+.+ |...+++|..|++|+|||.++..+...+.+|++.|.|+.|. .+.|++|+.|.+|++||++++ .+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-chh
Confidence 3457999988 55679999999999999999999999999999999999996 458999999999999999999 788
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEE
Q 002502 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
.++.+|...|..+.|+ ++++++++.|.+|.+||+.+...+ ..+.+|...|+.+.|+. + |+++++.|.+|+
T Consensus 271 ~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVsASgDRTik 343 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVSASGDRTIK 343 (499)
T ss_pred hHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEEecCCceEE
Confidence 8888999999999997 579999999999999999876532 35678999999999852 2 899999999999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecC
Q 002502 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~d 292 (915)
+|++.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|..-|.++.| +.+.+++|..|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 9999999999999999999988776 5689999999999999999999999999999999999999 46789999999
Q ss_pred CeEEEec
Q 002502 293 GTIMVKI 299 (915)
Q Consensus 293 g~v~i~~ 299 (915)
|.|++|.
T Consensus 420 GkikvWd 426 (499)
T KOG0281|consen 420 GKIKVWD 426 (499)
T ss_pred ceEEEEe
Confidence 9999984
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=241.25 Aligned_cols=253 Identities=20% Similarity=0.398 Sum_probs=215.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (915)
.+++++++.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+.. +...+.+++|.|||..+++|+.|+++.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3677899999999999999999999999999999999999999998877763 467899999999999999999999999
Q ss_pred EEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 83 VYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
.||++. +.....++- ...|.+++.++||+++++.+.|..|++++.++. ...... ....+|++++.+. ++.++++.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~li-se~~~its~~iS~-d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRGLI-SEEQPITSFSISK-DGKLALVN 413 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhccc-cccCceeEEEEcC-CCcEEEEE
Confidence 999874 444444332 346999999999999999999999999998875 333232 3456799999998 88899998
Q ss_pred ECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC-CcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC
Q 002502 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 240 (915)
-.+..+++||+...+.+..+.+|..+-..+.-+-.| +..++++|+.|+.|+||+..+|+++..+.||...|.+++|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 899999999999888888888888775555433333 3369999999999999999999999999999999999999996
Q ss_pred CC-EEEEEEcCCeEEEEeCCC
Q 002502 241 LP-IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 241 ~~-~l~~~~~dg~v~iwd~~~ 260 (915)
.+ .+|++|.||+||||....
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 65 789999999999998653
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-27 Score=218.41 Aligned_cols=276 Identities=18% Similarity=0.291 Sum_probs=228.4
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE--EecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEE
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--FEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWD 127 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd 127 (915)
+.+.+|..+|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|.. +.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44567889999999999999999999999999999987755543 45899999999999854 5789999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC
Q 002502 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.+ ++......... -.-+.|+| +++++++++.|..|.+.|.++.+.....+ ....++-++|+.+++ +++....
T Consensus 94 ~r~~-k~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd--~Fflt~G 167 (313)
T KOG1407|consen 94 IRSG-KCTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND--LFFLTNG 167 (313)
T ss_pred eccC-cEEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC--EEEEecC
Confidence 9998 44444433333 34678999 89999999999999999998876655443 456678889985555 6776777
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEE
Q 002502 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 287 (915)
.|.|.|..+..-+++.+++.|.....||.|+|+|+++++|+.|..+.+||+...-+++.+....-+|..++||-+|++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 89999999999999999999999999999999999999999999999999998889999998989999999999999999
Q ss_pred EEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002502 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (915)
+|++|-.|-|- ...+|..+|. -.++.+...++|+|...+
T Consensus 248 SaSEDh~IDIA---------~vetGd~~~e--------------------------------I~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 248 SASEDHFIDIA---------EVETGDRVWE--------------------------------IPCEGPTFTVAWHPKRPL 286 (313)
T ss_pred ccCccceEEeE---------ecccCCeEEE--------------------------------eeccCCceeEEecCCCce
Confidence 99999988872 2223333332 133445568999999999
Q ss_pred EEEEcC
Q 002502 368 VVVCGD 373 (915)
Q Consensus 368 lav~~~ 373 (915)
||.+.+
T Consensus 287 LAyA~d 292 (313)
T KOG1407|consen 287 LAYACD 292 (313)
T ss_pred eeEEec
Confidence 998763
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.6e-27 Score=262.63 Aligned_cols=283 Identities=19% Similarity=0.302 Sum_probs=240.4
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEE--cCCeEEEEECCC------------CceeEEEEecCCCEEEEEEeCCCCEEEEEeC
Q 002502 12 AQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQS------------QTMAKSFEVTELPVRSAKFVARKQWVVAGAD 77 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 77 (915)
.++...|.+++.||||..+|+|+ .||.++||+.+. .+.+.....|.+.|.|+.|+|||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34556799999999999999999 799999998642 2344556679999999999999999999999
Q ss_pred CCeEEEEECCC------------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee
Q 002502 78 DMFIRVYNYNT------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 78 dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
|+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+|+..+. ....++.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeee
Confidence 99999998762 1356778899999999999999999999999999999999999 8999999
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC------CCCeeEEEEEeCCCcCEEEEEEC----CC
Q 002502 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGSD----DH 209 (915)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~----dg 209 (915)
+|.+.|..+.|.| -+++|++-+.|++|++|++.+......+..+ ...+..+.|+|+|. +|++... -.
T Consensus 169 ~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~ 245 (942)
T KOG0973|consen 169 GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKS 245 (942)
T ss_pred cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcc
Confidence 9999999999999 8999999999999999998775555554332 23467899999998 7877532 35
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCC-----CC------------EEEEEEcCCeEEEEeCCCceeeeeec-cCC
Q 002502 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LP------------IIITGSEDGTVRIWHATTYRLENTLN-YGL 271 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~------------~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~ 271 (915)
++.|.+-.+.+.-..+-+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++.... ...
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 6889888888888889999999999999982 11 67899999999999987777655433 345
Q ss_pred ccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 272 ERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 272 ~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
..|..++|+|||..|.+++.||+|.+.
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 789999999999999999999999984
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=9.6e-26 Score=240.10 Aligned_cols=388 Identities=15% Similarity=0.236 Sum_probs=296.8
Q ss_pred EEEEEEcCCC--CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002502 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 18 v~~~~~sp~~--~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
|+++ +||.- +.++.|+..|.+.|||+++++.+.+++.+...|+++.=+|-=..+++|..+|+|.++|++.++.+.+|
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6665 46643 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002502 96 EAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
+...++|+.++|..||+. +++|+..|.+.+||++..+....+...|.+.|....|.| ....+++++.|..+++|-.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 865699999999999875 556667799999999998666666668989999999999 888999999999998885543
Q ss_pred C----CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE-----------------------------------
Q 002502 175 P----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD----------------------------------- 215 (915)
Q Consensus 175 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd----------------------------------- 215 (915)
+ ..++.-.+|..+..|+.|..... .++.+++.|++++.++
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 3 23344467888888888873321 2566666666555554
Q ss_pred ------------------------------CCCCcE-EEEec-----CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 216 ------------------------------YQTKSC-VQTLE-----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 216 ------------------------------~~~~~~-~~~~~-----~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+++... ...+. .....+++++.++.|++.+.|...|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 322111 11111 123568999999999999999999999999999
Q ss_pred Cceeeeee---ccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceec
Q 002502 260 TYRLENTL---NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (915)
Q Consensus 260 ~~~~~~~~---~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~ 336 (915)
+|....++ ..|.+.|+.++....++.+++++.+|.+.+|........ ..
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~------------------~~---------- 530 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK------------------KS---------- 530 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee------------------ee----------
Confidence 99988888 478899999999999999999999999999743332100 00
Q ss_pred cCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeeccc-----ccCccceeEEEEecCCcEEEEec-C
Q 002502 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-S 409 (915)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~-~ 409 (915)
.++ ...+..+..+.....+|++ .+-.|.+|+....+ ..+...++++.|||||+++++++ |
T Consensus 531 ----------l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 531 ----------LRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred ----------ecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 000 1123344444444445544 47788999887553 22557899999999999999999 8
Q ss_pred CeEEEeccCcceee--------eeecCcccceeecCcEEEEeeCC--eEEEEec
Q 002502 410 SKIKIFSKNFQEKR--------SVRPTFSAERIYGGTLLAMCSND--FICFYDW 453 (915)
Q Consensus 410 ~~v~v~~~~~~~~~--------~~~~~~s~~~i~~g~~La~~~~~--~i~~~d~ 453 (915)
++|++||+-....- .....|+|. |.+||+...+ .|++|.-
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPN----GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCC----CCEEEEEEecCceEEEEEc
Confidence 99999996533221 112278998 9999999888 7777754
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5e-27 Score=222.67 Aligned_cols=246 Identities=17% Similarity=0.363 Sum_probs=209.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC--EEEEEeCCCeEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~v 83 (915)
.....+..|.++|++++.+ ++++|+|+.|-+|+|||+++...+..+..|.+.|+++.|.+.-. +|++|+.||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3456678899999999997 89999999999999999999999999999999999999999875 8999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
|+......+..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.++.-...-..+. -..+.|+| .+.+|+.++.
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~-~Gd~F~v~~~ 188 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSP-QGDHFVVSGR 188 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcC-CCCEEEEEec
Confidence 99999999999999999999999999999999999999999999988743333322333 34599999 7888888876
Q ss_pred CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE--eCCC
Q 002502 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF--HPEL 241 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~--~~~~ 241 (915)
+ .|-+|.+.+......+. ....+.|+.|...+ ++++|++|+.|.+||..++.+...+.+|...|..+.+ .|++
T Consensus 189 ~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~---~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIE-NPKRILCATFLDGS---ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred c-EEEEEecccHhHhhhhh-ccccceeeeecCCc---eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 5 58899987765544443 33556677665333 7999999999999999999999999999999999884 4677
Q ss_pred CEEEEEEcCCeEEEEeCCCc
Q 002502 242 PIIITGSEDGTVRIWHATTY 261 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~ 261 (915)
.+|+++|.||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999998765
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.4e-27 Score=231.40 Aligned_cols=279 Identities=19% Similarity=0.282 Sum_probs=248.5
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
..++++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46899999998888999999999999999999999999999999999999999999999999999999999887878888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002502 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
..|..+|+.+..+|+|.||++++.||+..+.|++++......... ..-.+++.+|+| |+.+|.+|+.||.|+|||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 899999999999999999999999999999999999555544332 334589999999 999999999999999999999
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCeE
Q 002502 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTV 253 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~v 253 (915)
+.....|.+|.++|..++|+.+|- ||+++++|+.|++||++..+...++... ...+.+++|.+.|.+|+.++.+=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999999999999999998876 8999999999999999987776666533 2369999999999999999887667
Q ss_pred EEEeCC--CceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 254 RIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 254 ~iwd~~--~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
++++-. ++..+..+..+.+..+++.|....+++++++.|..+++
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 776633 56678888888888999999999999999999888776
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.2e-28 Score=230.53 Aligned_cols=279 Identities=25% Similarity=0.349 Sum_probs=231.9
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.++.+.|..|+|||++|++|+.||.|.|||+.+|+..+.+ .-+.+.|.|+.||.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4567889999999999999999999999999998875443 35778999999999999999999999999999
Q ss_pred CCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 128 WEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
+.++ .+.+.+. .|...|+|+.|+. |+..+++++.|.++++--+.+++....+.+|...|+...|.++|. .+++++
T Consensus 292 i~tG-~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~--~iisaS 367 (508)
T KOG0275|consen 292 IETG-QCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH--HIISAS 367 (508)
T ss_pred Eecc-hHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC--eEEEec
Confidence 9999 5666555 8999999999999 889999999999999999999999999999999999999999998 799999
Q ss_pred CCCeEEEEECCCCcEEEEecCC--ccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCceeeeeeccC---CccEEEEEEe
Q 002502 207 DDHTAKVWDYQTKSCVQTLEGH--THNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYM 280 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~s 280 (915)
.||+|++|+..+.+|+.+++.. ..+|.++-.-|.. ..++++...++|+|.++. |+.++++..+ .+...+.+.|
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999999999888753 4568888888755 477888888899999976 8888877654 3567788899
Q ss_pred cCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002502 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|.|.++.+.+.|+.++.+... +|++- . .+.-++..+-.++
T Consensus 447 pkGewiYcigED~vlYCF~~~---------sG~LE---------------------------~----tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVL---------SGKLE---------------------------R----TLPVHEKDVIGLT 486 (508)
T ss_pred CCCcEEEEEccCcEEEEEEee---------cCcee---------------------------e----eeecccccccccc
Confidence 999999999999998874111 11111 0 0122333455788
Q ss_pred ECCCCCEEEEEc-CCcEEEE
Q 002502 361 HNPNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~ 379 (915)
++|....+|+.+ ||.+.+|
T Consensus 487 HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cCcccchhhhhcccchhhhc
Confidence 888888888777 7776666
No 86
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.2e-26 Score=250.37 Aligned_cols=265 Identities=18% Similarity=0.252 Sum_probs=208.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCcee-------------EEEEecCCCEEEEEEeC-CCCEEEEEeCCC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-------------KSFEVTELPVRSAKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg 79 (915)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4456777777778666676666666667765433221 24678999999999999 889999999999
Q ss_pred eEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEe
Q 002502 80 FIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 80 ~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (915)
+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++|++||+.++ .....+.+|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEE
Confidence 9999999765 3466788999999999999985 68999999999999999988 6677788899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEE----CCCeEEEEECCCCc-EEEEe
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGS----DDHTAKVWDYQTKS-CVQTL 225 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~ 225 (915)
| ++++|++++.|++|++||+++++.+..+..|... +..+.|.+++. .+++++ .|+.|++||+++.. ++...
T Consensus 178 p-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 L-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred C-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 9 8999999999999999999999988888888765 34677887765 455543 47899999998754 44443
Q ss_pred cCC-ccCeEEEEEeCCCCEEEEEE-cCCeEEEEeCCCceeeeeeccC-CccEEEEEEecC
Q 002502 226 EGH-THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKS 282 (915)
Q Consensus 226 ~~~-~~~v~~v~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~s~~ 282 (915)
..+ ...+....|++++.+|++++ .||.|++||+.+++........ ..++..++|.|.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 333 33456677899999998887 4999999999988876655432 335666777764
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.1e-27 Score=245.64 Aligned_cols=282 Identities=21% Similarity=0.376 Sum_probs=246.6
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeE--EEEecCCCEEE-EEEeC-CCCEEEEEeCCC
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK--SFEVTELPVRS-AKFVA-RKQWVVAGADDM 79 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-~~~s~-~~~~l~~g~~dg 79 (915)
..++.+.+.+|..-|+.+++.+.. ++++++.||++++|+-..++.+. .+.+|.+-|.+ +++.+ ++-.+++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999977655 78999999999999965554443 45667776666 77775 555699999999
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+|.+|...+..+..++++|...|.|+....++. +++||.|.++++|.... +...+.+|...|+++..-| . +.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~-e-~~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLP-E-NTYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecC-C-CcEE
Confidence 999999999999999999999999999888876 99999999999998653 4556899999999999998 3 4999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002502 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 239 (915)
+|+.|.+|++|.- ++...++.+|...|..+++-+++. +++++.||.|++|++ +|.++..+.+|..-|.++...+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999974 778899999999999999998875 999999999999998 6999999999999999999888
Q ss_pred CCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
++..++++++|++++||+.. .+.+.+..+...+|++.+-++|. +++|+.||.|++|...
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 88899999999999999865 88888888888999999999886 6789999999997544
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=219.38 Aligned_cols=285 Identities=19% Similarity=0.317 Sum_probs=237.8
Q ss_pred EEEEecCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 51 KSFEVTELPVRSAKFVA---RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+..+|..||..++|+| +|-+|++++.||.-.+-+-+||..+.+|.+|.+.|++...+.+-.+-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45668999999999986 888999999999999999999999999999999999999999888889999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.-++.. ...+ .|..-|.+++|+. |.+.|++|+.+..+++||++..+ +...+.+|.+.|..+-|+...+ .+++.+
T Consensus 88 a~tgde-lhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~--~iLSSa 162 (334)
T KOG0278|consen 88 AVTGDE-LHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK--CILSSA 162 (334)
T ss_pred hhhhhh-hhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc--eEEeec
Confidence 988843 3333 4788899999998 89999999999999999998765 5567889999999999998766 688889
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeE
Q 002502 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l 286 (915)
.|++|++||.+++..++++. ...+|+++.++++|.+|.++ ..+.|.+||..+..++..+..+ ..|.+.+.+|+...+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFF 239 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-cccccccccCCCceE
Confidence 99999999999999999997 67789999999999866554 5678999999999999988877 678999999999999
Q ss_pred EEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002502 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (915)
Q Consensus 287 ~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (915)
++|+.|+.++.+ ++.+|+.+... ...+..++.++.|+|+|.
T Consensus 240 VaGged~~~~kf------------------------------------Dy~TgeEi~~~---nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 240 VAGGEDFKVYKF------------------------------------DYNTGEEIGSY---NKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred EecCcceEEEEE------------------------------------eccCCceeeec---ccCCCCceEEEEECCCCc
Confidence 999999887762 23333333221 134455667777777777
Q ss_pred EEEEEc-CCcEEEEEee
Q 002502 367 FVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 367 ~lav~~-~~~~~i~~~~ 382 (915)
..|+++ ||.+++|...
T Consensus 281 ~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTT 297 (334)
T ss_pred eeeccCCCceEEEEEec
Confidence 777776 6777777544
No 89
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=3.3e-27 Score=222.69 Aligned_cols=287 Identities=17% Similarity=0.280 Sum_probs=236.5
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC------------C------ceeEEEEecCCCEEEEEEeCCCCE
Q 002502 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------------Q------TMAKSFEVTELPVRSAKFVARKQW 71 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~------------~------~~~~~~~~~~~~v~~~~~s~~~~~ 71 (915)
.++.|.+++++-+|||||.++|+|+.|-.|+|+|++. + ..++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4678999999999999999999999999999999861 1 356677789999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE---eecCCcceE
Q 002502 72 VVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI---FEGHSHYVM 146 (915)
Q Consensus 72 l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~i~ 146 (915)
|++|+.|++|++||+......+.++ ....+|+++.|+|.|.+|++|..-.++++||+.+- ++... -..|...|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 9999999999999987533222222 23567999999999999999999999999999986 44332 246889999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCC-CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEE
Q 002502 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 224 (915)
++.+++ .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..+++ |+++.+.|..+++|.+.+++++..
T Consensus 266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEeecCCcceeeeeeecCCceEEE
Confidence 999999 89999999999999999998888887774 343 4688888988877 999999999999999999999988
Q ss_pred ecCCc-----cCeEEEEEeCCCCEEEEEE-cCCeEEEEeCCCceeeeeec-cCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 225 LEGHT-----HNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 225 ~~~~~-----~~v~~v~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+.+.. ..-+...|+....+++.-. ..+.+.-||.++......+. +|.+.+..+.-||.+.-+.++++|-..++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 87531 1123455666666666543 24679999999887654443 57789999999999999999999999999
Q ss_pred ecC
Q 002502 298 KIG 300 (915)
Q Consensus 298 ~~~ 300 (915)
|-.
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 843
No 90
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-24 Score=222.21 Aligned_cols=417 Identities=15% Similarity=0.168 Sum_probs=289.0
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-eEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK-VKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 54 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.-...+|.+++++.+.+.||++-.+|.|-+|++..+=. ...+.++ ...|.+++|++ +.+|++.+.+|.|.-||+.+.
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence 34567899999999999999999999999999986433 3344444 45799999995 557999999999999999998
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
..........+.|++++.+| .+..+++|+.||.+..++...++... .+....+.+.+++|.|++. .+++|+.||
T Consensus 101 -k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg 176 (691)
T KOG2048|consen 101 -KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDG 176 (691)
T ss_pred -ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCc
Confidence 66667777888999999999 88999999999988888876665433 2344568899999999887 599999999
Q ss_pred eEEEEECCCCcEEEEecC--------CccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEec
Q 002502 210 TAKVWDYQTKSCVQTLEG--------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~ 281 (915)
.|++||..++..+..... ...-|+++.+-.++ .|++|..-|+|.+||...+.+++.+..|...|.+++..+
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD 255 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC
Confidence 999999998887662211 22237788888665 689999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCeEEEecCCCc---------------ceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeee
Q 002502 282 SSRRIVIGYDEGTIMVKIGREE---------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV 346 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~i~~~~~~---------------~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~ 346 (915)
++.++.+++.|+.+.-...... .+.++..-+..++....+..++-.....+ ...+..
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~--~~~~h~------ 327 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREF--KNMDHR------ 327 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccccc--Cchhhh------
Confidence 9999999999998876422111 11111111112222222222111110000 000000
Q ss_pred eecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecc--------------cccCccceeEEEEecCCcEEEEecCCeE
Q 002502 347 KELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW--------------RNRSFGSALEFVWSSDGEYAVRESSSKI 412 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~--------------~~~~~~~~~~~~~s~dg~~l~~~~~~~v 412 (915)
+......-..+...|..++++......+.+|...+. ..+....+.+.+.||+|++++...-..+
T Consensus 328 --~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~ 405 (691)
T KOG2048|consen 328 --QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRT 405 (691)
T ss_pred --ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccce
Confidence 011111112345555566666666677777765443 1223456789999999999999987778
Q ss_pred EEeccCcceeeeeec--------------CcccceeecCcEEEEeeCC--eEEEEeccCCc--EEEEEe-----ccccEE
Q 002502 413 KIFSKNFQEKRSVRP--------------TFSAERIYGGTLLAMCSND--FICFYDWAECR--LIRRID-----VTVKNL 469 (915)
Q Consensus 413 ~v~~~~~~~~~~~~~--------------~~s~~~i~~g~~La~~~~~--~i~~~d~~~~~--~i~~~~-----~~i~~v 469 (915)
+||.++......... .|+.+ +..+..++.+ .+..++++++. .+..+. ..|..+
T Consensus 406 ~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid----~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l 481 (691)
T KOG2048|consen 406 KIYRLQPDPNVKVINVDDVPLALLDASAISFTID----KNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRL 481 (691)
T ss_pred EEEEeccCcceeEEEeccchhhhccceeeEEEec----CceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeE
Confidence 888766533211110 23333 6666666644 77777776553 222221 378899
Q ss_pred EEcCCCCEEEEEeCCe-EEEEE
Q 002502 470 YWADSGDLVAIASDTS-FYILK 490 (915)
Q Consensus 470 ~~s~dg~~la~~~~~~-~~~~~ 490 (915)
..|++|+++|.++..+ +++|.
T Consensus 482 ~~SsdG~yiaa~~t~g~I~v~n 503 (691)
T KOG2048|consen 482 VVSSDGNYIAAISTRGQIFVYN 503 (691)
T ss_pred EEcCCCCEEEEEeccceEEEEE
Confidence 9999999998877554 44554
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=232.10 Aligned_cols=540 Identities=16% Similarity=0.229 Sum_probs=340.4
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceeE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~vwd~~~~~~~~ 93 (915)
..-..++-+|-..++|.- ....|.+||.+..+.-+.+..+..+++|++|+++|+++++|- ....++||++.....+.
T Consensus 38 ~~~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVA 116 (1080)
T KOG1408|consen 38 KNANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVA 116 (1080)
T ss_pred ecCCcccccccccceeec-cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchh
Confidence 334456667765555432 245799999988887777888889999999999999999985 56789999999988899
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEc--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
.|..|.-.++|++|+|.++|+++.+. |..|.+|||+.+ ....-..-...|..++|+. ++.++++.+ +..|++|.
T Consensus 117 EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N--~~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wy 192 (1080)
T KOG1408|consen 117 EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVN--SSGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWY 192 (1080)
T ss_pred hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhc--ccccccccceeEEEEEEcc-CCceeeeee-eeeEEEEE
Confidence 99999999999999999999997654 788999999865 1222223456789999998 899999876 58899999
Q ss_pred CCCCCCc-----------------------------------eEEe--cC-----------------CCCeeEEEEEeCC
Q 002502 172 LGSPDPN-----------------------------------FTLD--AH-----------------QKGVNCVDYFTGG 197 (915)
Q Consensus 172 ~~~~~~~-----------------------------------~~~~--~~-----------------~~~v~~~~~~~~~ 197 (915)
+..++.. +.+. +| ...-+|++.+ .
T Consensus 193 l~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~ 270 (1080)
T KOG1408|consen 193 LQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S 270 (1080)
T ss_pred eeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c
Confidence 8654310 0000 00 0112344433 2
Q ss_pred CcCEEEEEECCCeEEEEECCCCcEEEEec------------------------CCccCeEEEEEeCCCCEEEEEEcCCeE
Q 002502 198 DKPYLITGSDDHTAKVWDYQTKSCVQTLE------------------------GHTHNVSAVCFHPELPIIITGSEDGTV 253 (915)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------~~~~~v~~v~~~~~~~~l~~~~~dg~v 253 (915)
+ +|++|+.+|.|++|+..+-....++. +.......+.|++....|.+.-.|..+
T Consensus 271 r--~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 271 R--LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred c--eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 2 89999999999999976643332221 001123467789888899999999999
Q ss_pred EEEeCCCcee---eeeeccCCccEEEEEEecC-----------CCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEee
Q 002502 254 RIWHATTYRL---ENTLNYGLERVWAIGYMKS-----------SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (915)
Q Consensus 254 ~iwd~~~~~~---~~~~~~~~~~v~~i~~s~~-----------~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~ 319 (915)
++||++.-+. ...+-.|...||.+..-|. ...+++++.||+|++|...... ++.++.
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct------nn~vyr--- 419 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT------NNQVYR--- 419 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc------ccceee---
Confidence 9999987553 2345567778888765551 1348899999999999543310 111110
Q ss_pred cceEEEEeeecccceeccCCceee-------eeee---ecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-
Q 002502 320 NEIQTVNIKSVGADYEVTDGERLP-------LAVK---ELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR- 387 (915)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~g~~~~-------~~~~---~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~- 387 (915)
..+...++.... ..|++.-. +.-+ ..-.....++++++||+|++||.+. .|++.+|++...+..
T Consensus 420 RNils~~l~ki~----y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~ 495 (1080)
T KOG1408|consen 420 RNILSANLSKIP----YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC 495 (1080)
T ss_pred cccchhhhhcCc----cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh
Confidence 000000000000 01111000 0000 0122345678999999999999998 899999998876533
Q ss_pred ----CccceeEEEEec-C--CcEEEEec-CCeEEEeccCc--ceeee-------eec-CcccceeecCcEEEEeeCCeEE
Q 002502 388 ----SFGSALEFVWSS-D--GEYAVRES-SSKIKIFSKNF--QEKRS-------VRP-TFSAERIYGGTLLAMCSNDFIC 449 (915)
Q Consensus 388 ----~~~~~~~~~~s~-d--g~~l~~~~-~~~v~v~~~~~--~~~~~-------~~~-~~s~~~i~~g~~La~~~~~~i~ 449 (915)
+-..|.|+-||. + .++|++++ |.-|.|||... ....+ +.. .|...+ +...+++++.|...
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--ln~~MiscGADksi 573 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--LNRKMISCGADKSI 573 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--CceEEEeccCchhh
Confidence 346788999983 2 36788888 78899998431 11111 111 222220 13567777777555
Q ss_pred EEeccC----CcEEEEEe-----ccccEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEe
Q 002502 450 FYDWAE----CRLIRRID-----VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHE 520 (915)
Q Consensus 450 ~~d~~~----~~~i~~~~-----~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 520 (915)
.|+... |.+..+.. ..+..|+..|+.+++++++.|.-+++.- +++ ....+.|..-..
T Consensus 574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~--------i~s------gKq~k~FKgs~~ 639 (1080)
T KOG1408|consen 574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD--------IES------GKQVKSFKGSRD 639 (1080)
T ss_pred heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe--------ccc------cceeeeeccccc
Confidence 555543 44333322 3678899999999999999887765531 111 112233333222
Q ss_pred eeeeEEeeEEecC--EEEEEccCCeEEEE--ECCEE-eEEEecccceEEEEEEeeCCEEEEEecCCceEEEEecchHH
Q 002502 521 TNERVRTGLWVGD--CFIYNNSSWRLNYC--VGGEV-TTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLI 593 (915)
Q Consensus 521 ~~~~i~~~~w~~~--~~i~~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~ 593 (915)
-+........++. ++.-.-....|.++ +.++. ..+..+...+.=+.|.++..+++-+.-+|-|+.|.+.+.++
T Consensus 640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHh
Confidence 2223333444442 22222222334433 23333 23333334444456667788999999999999999977444
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-27 Score=219.03 Aligned_cols=243 Identities=19% Similarity=0.326 Sum_probs=210.5
Q ss_pred CCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCC-CceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc
Q 002502 14 RSERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 14 h~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
-.+.+..++|++.. +.+++++.||+++|||... ..++..++.|...|.++.|++. +..+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35678999999964 5677888899999999643 3577788899999999999984 5667788999999999999999
Q ss_pred eeEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002502 91 KVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
.+.++.+|...|....|||. .+.++++|.||++++||++...+ ...+..|...|.++.|+.-+.+.+++|+.|+.|++
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 99999999999999999995 56889999999999999986633 34478899999999999988999999999999999
Q ss_pred EECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEE
Q 002502 170 WNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIIT 246 (915)
Q Consensus 170 ~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~-~~~~l~~ 246 (915)
||+++- .++..+.+|.-.|..+.|+|.... +|++++.|-+++|||...+ ..+.+...|..-+..+.|++ +..++++
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS 296 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCcchhh-HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence 999874 577888999999999999998765 8999999999999998743 45666777888889999998 4558999
Q ss_pred EEcCCeEEEEeC
Q 002502 247 GSEDGTVRIWHA 258 (915)
Q Consensus 247 ~~~dg~v~iwd~ 258 (915)
++.|+.++||+.
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 999999999983
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=247.28 Aligned_cols=276 Identities=17% Similarity=0.296 Sum_probs=236.6
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEECCCCc------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--c
Q 002502 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--D 90 (915)
Q Consensus 20 ~~~~sp-~~~~la~~~~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~--~ 90 (915)
.+..++ .+++|++|+.||.|++|+..... .+.+++.|...|..+....+|+.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 444444 56679999999999999976532 25667889999999999999999999999999999999877 5
Q ss_pred eeEEEecCCCCEEEEEE-cCCCCEEEEEEcCCeEEEEECCCCce---------EEEEee-cCCcceEEEEEecCCCCEEE
Q 002502 91 KVKVFEAHTDYIRCVAV-HPTLPYVLSSSDDMLIKLWDWEKGWM---------CTQIFE-GHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~-s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~i~~~~~~p~~~~~l~ 159 (915)
++.++..|.++|.|++. -++...+++|+-|+.|.+||+.++.. ....+. ++...|.+++.++ .+..|+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEE
Confidence 67788899999999999 77888999999999999999997621 122233 7888999999999 788999
Q ss_pred EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002502 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 239 (915)
+|+..+.|++||.++.+.+..+.+|...|.++..+++|. .++++++||+|++||+...+|+.++..|...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+-..+++|+.||.|..=|+++......+-....+|..+..+...+-+-+++.|+.|.-|
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRW 324 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceec
Confidence 99999999999999999999865444343444667777777555556778888888776
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=216.86 Aligned_cols=270 Identities=18% Similarity=0.290 Sum_probs=217.2
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCC-Ccee-EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002502 13 QRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 13 ~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
.-.+.|.+++||| ...++++++-||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 555666777799999999987 3333 345568999999999999999999999999999999998
Q ss_pred ceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 90 DKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+..+..|.++|.++.|-+... .|++||.|.+|+.||.+.... ...+. -..++.++.. ...+++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~-LPeRvYa~Dv---~~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQ-LPERVYAADV---LYPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeee-ccceeeehhc---cCceeEEEecCCcE
Confidence 5667788999999999988665 799999999999999998733 33332 3345666554 34588999999999
Q ss_pred EEEECCCCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC--cEEEEecCCc---------cCeEE
Q 002502 168 KIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHT---------HNVSA 234 (915)
Q Consensus 168 ~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---------~~v~~ 234 (915)
.+|+++++...+.. ...+-.+.|++...+.++ .+.|+-+|.+.+..+..+ +.-.+|+.|. -.|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999776443321 234456889999999885 699999999999988775 3334444443 24778
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 235 v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
|+|+|.-..|++.|.||++.+||-.....+.+...+..+|++.+|+.+|.++|-+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999989999999999999999887778888888889999999999999887643
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=252.08 Aligned_cols=271 Identities=26% Similarity=0.426 Sum_probs=245.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
|...+.+..|+ +.+++++..+++|++||..++..+.. +.+|.+.|.++++..-+..+++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678889998 55799999999999999999998888 9999999999999988899999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002502 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.++.+|.+.|.++...+ .++++|+.|.+|++|++.++ .+..++.+|..+|.++..+ ++.+++|+.|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999998764 46888899999999999988 7888888899999999985 789999999999999999
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002502 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 251 (915)
.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||++++ +++.++.+|..-+..+.+ .+++|++++.||
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999977543 37999999999999999999 999999999888866554 457899999999
Q ss_pred eEEEEeCCCceeeeeecc-CCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
.|++||..+++++.++.. +...|+.+++. ...+++++.+|.+.+|.
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 999999999999999998 56788888876 46789999999999973
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=253.95 Aligned_cols=289 Identities=16% Similarity=0.285 Sum_probs=217.0
Q ss_pred hhcc-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEec----------CCCEEEEEEeC-----CCCEE
Q 002502 9 RKLA-QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT----------ELPVRSAKFVA-----RKQWV 72 (915)
Q Consensus 9 ~~l~-~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~s~-----~~~~l 72 (915)
+.+. .|.+.|.+|.||+||+|||+|+.||.|+||.+...+....-.+. .+.+..+.-++ .....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 89999999999999999999999999999998663321110000 00011111111 01111
Q ss_pred EEEeCCCeEEEEECC----CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEE
Q 002502 73 VAGADDMFIRVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (915)
-.+.....+ +.+.. ..+++..+.+|.+.|..+.||.++ +|++++-|.+|++|++... .++..|. |...|+|+
T Consensus 340 ~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 340 RKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccCCccc-cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-ceeeEEe-cCCeeEEE
Confidence 122222222 22211 236677889999999999999865 8999999999999999976 7888776 99999999
Q ss_pred EEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC-
Q 002502 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG- 227 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 227 (915)
+|+|.|.++|++|+.||.|+||++...+... ...-..-|++++|.|+|+ +.++|+.+|.+++|+....+....+..
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc--eEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999999999999999999997765443 334457899999999988 799999999999999987665544321
Q ss_pred -------CccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCCCceeeeeeccCC--ccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 228 -------HTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 228 -------~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
....|+.+.|.|... .|++.+.|..|||||.++..++..+++.. ..-....|+.||++|+++++|..|++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 123799999998654 57778899999999998888888877542 34467789999999999999999999
Q ss_pred ecCCCcc
Q 002502 298 KIGREEP 304 (915)
Q Consensus 298 ~~~~~~~ 304 (915)
|.....+
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9754443
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.8e-27 Score=234.49 Aligned_cols=239 Identities=22% Similarity=0.322 Sum_probs=208.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+|.+++|+|...+=++....-.+.+|+..+....+.+....+.+.+++|-.||.+++.|...|.|+++|..+. ...
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HHH
Confidence 3468999999997655333334467999999998888888778889999999999999999999999999996653 677
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|+.++..+.|+|.++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..+. ++++|+.||.|++||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEE
Confidence 8888999999999999988999999999999999999998876688999999999999998765 899999999999999
Q ss_pred CCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCCccEEEEEEecCCCeEEEEecCC
Q 002502 216 YQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 216 ~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg 293 (915)
++.. ..+.++. |..+|..+.+-|.|..|++++. +.|++||+.+|. .+.....|...|+|+++..++..|.+|+-||
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 9986 6677776 9999999999999999999874 489999999655 5555555889999999999999999999999
Q ss_pred eEEEe
Q 002502 294 TIMVK 298 (915)
Q Consensus 294 ~v~i~ 298 (915)
.+.++
T Consensus 261 ~VKVf 265 (487)
T KOG0310|consen 261 HVKVF 265 (487)
T ss_pred ceEEE
Confidence 99985
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=6.6e-26 Score=215.05 Aligned_cols=268 Identities=22% Similarity=0.364 Sum_probs=222.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
-.+.|.+|.|+|.+..|++++-||.+++|++....+...+. |..++.+++|.++ ..+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-e
Confidence 46789999999999999999999999999998887766666 8999999999874 5699999999999999998654 4
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (915)
.+..|..+|+||..++-...+++||.|++|++||.+.. .....+. ....|.++..+ ++.|++|+.+..+.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 55679999999999998889999999999999999874 3333333 33478888774 7899999999999999999
Q ss_pred CCCCceEE--ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC----cEEEEecCCc---------cCeEEEEEe
Q 002502 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHT---------HNVSAVCFH 238 (915)
Q Consensus 174 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~v~~~ 238 (915)
+.....+. ...+..+.|+++.|++.+ +++++-||.|.+=.+... +....|+.|. .+|.+++|+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 86654422 334567899999997775 888999999988665544 2334444443 268999999
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEec
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
|-...++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99889999999999999999999999988888788999999999999999885
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-27 Score=245.32 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=221.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|+...+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378899999999999999999999999999999999999998 99999999998 677999999999999999987765
Q ss_pred EE-EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE--CCCcEEE
Q 002502 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS--LDRTIKI 169 (915)
Q Consensus 93 ~~-~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~--~dg~i~i 169 (915)
.. +.+|...|..+.|++++.++++|+.|+.+.|||.... .+...+..|...|..++|+|-..++||+|+ .|+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 55 7899999999999999999999999999999999665 677788899999999999998889999965 4999999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002502 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 249 (915)
||..++..+..+. ....|.++.|++..++.....|..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999998877765 567899999999987633334566789999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCc
Q 002502 250 DGTVRIWHATTY 261 (915)
Q Consensus 250 dg~v~iwd~~~~ 261 (915)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998764
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.6e-25 Score=208.86 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=210.8
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc--CCeEEE
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~--dg~i~i 125 (915)
+..+.+....+.|.++.|+++|..+++++.|..+++||..+++.++++..+.-.+..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344556666789999999999999999999999999999999999999988888999999888777877776 889999
Q ss_pred EECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002502 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.++.++ +.++.+.||...|.+++.+| .++.|++++.|++|++||++..++...+..... ..++|.|.|- +++++
T Consensus 85 Lsl~dN-kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL--ifA~~ 158 (311)
T KOG1446|consen 85 LSLHDN-KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL--IFALA 158 (311)
T ss_pred EEeecC-ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc--EEEEe
Confidence 999998 89999999999999999999 669999999999999999998887776654433 4678888876 77777
Q ss_pred ECCCeEEEEECCC--CcEEEEec---CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCcc---EEEE
Q 002502 206 SDDHTAKVWDYQT--KSCVQTLE---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAI 277 (915)
Q Consensus 206 ~~dg~i~iwd~~~--~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i 277 (915)
.....|++||++. +.+..++. +.....+.+.|+|+|++|+.++..+.+++.|.-+|....++..+... --+.
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 7777999999986 33444444 33567899999999999999999999999999999988888765432 2578
Q ss_pred EEecCCCeEEEEecCCeEEEecC
Q 002502 278 GYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 278 ~~s~~~~~l~~g~~dg~v~i~~~ 300 (915)
+|+||++++.+|++||++.+|..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEc
Confidence 89999999999999999999843
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=218.67 Aligned_cols=289 Identities=18% Similarity=0.279 Sum_probs=247.4
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
.+.+.+.|.||.+.|..++.....+.+.+++.|.+-+||.+++|.++..+.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC----------------------------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002502 84 YNY------NT----------------------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 84 wd~------~~----------------------------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
|.. .. ..++..+.+|.+.|.+..|-..|+.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 00 01245677899999999999999999999999999
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEE
Q 002502 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.+||++++ .+...+.+|....+.++-+| ...++++++.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ +
T Consensus 297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---v 371 (481)
T KOG0300|consen 297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---V 371 (481)
T ss_pred eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc---e
Confidence 99999999 88999999999999999999 8889999999999999999743 34567899999999999988765 9
Q ss_pred EEEECCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeee----eeccCCccEEEE
Q 002502 203 ITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAI 277 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i 277 (915)
++|++|.+|++||+++.+ ++.++. ...++..++.+..+++|+.--.+..|++||++..++.. .-++|...|.|+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 999999999999999855 666766 56789999999999999999889999999987554322 345666779999
Q ss_pred EEecCC--CeEEEEecCCeEEEe
Q 002502 278 GYMKSS--RRIVIGYDEGTIMVK 298 (915)
Q Consensus 278 ~~s~~~--~~l~~g~~dg~v~i~ 298 (915)
+|..+. .-|.+++-|..+.-|
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eccccCcccccccccccceeeee
Confidence 998653 234455555555544
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9e-25 Score=196.96 Aligned_cols=281 Identities=20% Similarity=0.256 Sum_probs=229.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC------Cc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QT---------MAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (915)
.+..|++++|+|.|.+.|+|+...+.+|--+.. +. ..+.-+.|.+.|.|.+|+|.|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 467899999999999999999999988875432 11 112234588999999999999999999999
Q ss_pred CeEEEEECCCCce-----eEEEecCCCCEEEEEEcCC----CCEEEEEE-cCCeEEEEECCCCceEEEEeecCCcceEEE
Q 002502 79 MFIRVYNYNTMDK-----VKVFEAHTDYIRCVAVHPT----LPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (915)
Q Consensus 79 g~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (915)
.+|++.-++...+ -..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...+ ...+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence 9999986654322 2456789999999999653 34556554 4667777788887 6778889999998877
Q ss_pred EEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--C-----CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE
Q 002502 149 TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--H-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
- +- ++-+|++|+.|.+|++||++-+.++.++.. | ...|.+++..|.|. +|++|..|....+||++.+++
T Consensus 190 y-sw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 190 Y-SW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred E-Ee-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCce
Confidence 3 22 578999999999999999988777766532 2 24688899988887 899999999999999999999
Q ss_pred EEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc----eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 222 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
++.+..|...|.++.|+|...++++++.|..|++-|+... -.+.....|...+..+.|+|..-.+++.+.|.++.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 9999999999999999999999999999999999997632 133455667788899999999999999999999999
Q ss_pred ec
Q 002502 298 KI 299 (915)
Q Consensus 298 ~~ 299 (915)
|.
T Consensus 346 wa 347 (350)
T KOG0641|consen 346 WA 347 (350)
T ss_pred ec
Confidence 84
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.3e-27 Score=241.41 Aligned_cols=229 Identities=23% Similarity=0.439 Sum_probs=204.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc------eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-eEEEEee
Q 002502 67 ARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFE 139 (915)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 139 (915)
|.+++|++|+.||.|++|+..... .+..++.|.+.|..+....+++.|+++|.|-+|++|+...+. .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 466789999999999999986432 256778999999999999999999999999999999988663 5677888
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC--c--------eEEe-cCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP--N--------FTLD-AHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.|..+|.|+++-.++...+++|+.|+.|.+||++++.. . ..+. ++..+|.+++.++.+. .+++|+..
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EEEecCcc
Confidence 99999999999444889999999999999999987632 1 1122 6778899999988886 79999999
Q ss_pred CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEE
Q 002502 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~ 288 (915)
+.+++||.++++.+..+++|..+|..+..++||..++++|.||+|++||+...+++.++..|...||++..+|+-..+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEE
Q 002502 289 GYDEGTIMV 297 (915)
Q Consensus 289 g~~dg~v~i 297 (915)
|+.||.|+.
T Consensus 273 G~rd~~i~~ 281 (735)
T KOG0308|consen 273 GGRDGNIYR 281 (735)
T ss_pred cCCCCcEEe
Confidence 999999987
No 104
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.2e-25 Score=240.62 Aligned_cols=245 Identities=16% Similarity=0.266 Sum_probs=192.2
Q ss_pred EEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eeEEEecCCCCEE
Q 002502 33 SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD--------KVKVFEAHTDYIR 103 (915)
Q Consensus 33 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~i~ 103 (915)
|+..|.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 344778999998887788889999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEEcCCCCEE-EEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe
Q 002502 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (915)
Q Consensus 104 ~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 182 (915)
+++|+|++..+ ++++.|++|++||++++. ....+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999998764 688999999999999884 333443 567899999999 89999999999999999999999888899
Q ss_pred cCCCCeeEEEEE-----eCCCcCEEEEEECCC----eEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcC
Q 002502 183 AHQKGVNCVDYF-----TGGDKPYLITGSDDH----TAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 183 ~~~~~v~~~~~~-----~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~d 250 (915)
+|.+.+.+..+. +++. ++++++.++ .|++||+++ ++++..+.. +.+.+......++|.++++|+.|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 998876554432 4444 788877664 799999995 556655432 23333334445568899999999
Q ss_pred CeEEEEeCCCcee--eeeeccCCccEEEEEEecCC
Q 002502 251 GTVRIWHATTYRL--ENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 251 g~v~iwd~~~~~~--~~~~~~~~~~v~~i~~s~~~ 283 (915)
+.|++|++..+.. +..+. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 9999999987642 22222 34667888998864
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1e-25 Score=247.13 Aligned_cols=248 Identities=27% Similarity=0.464 Sum_probs=224.7
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (915)
+...+.||.+.|.++++..-+..|++|+.|.+++|||..+|.+..++.+|...|+++... +..+++|+.|.+|++|++
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEec
Confidence 344589999999999999988899999999999999999999999999999999988764 456888999999999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.++..+..+.+|.++|+++..+ ++++++|+.||+|++||+.++ ++...+.+|...|.++.+.+ . +.+++|+.|++
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTT 393 (537)
T ss_pred cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecC-c-ceEEeeeeccc
Confidence 9999999999999999999998 789999999999999999988 89999999999999998864 2 89999999999
Q ss_pred EEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC-CccCeEEEEEeCCCCEE
Q 002502 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPII 244 (915)
Q Consensus 167 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l 244 (915)
|++||+++. +++.++..|..-+..+.+. ++ +|++++.|++|++||..++++++.+.+ |...|+.+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DN--FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcccccccccc--cc--eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceE
Confidence 999999999 8999999999988776653 23 799999999999999999999999998 66888888876 3578
Q ss_pred EEEEcCCeEEEEeCCCceeeeee
Q 002502 245 ITGSEDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~ 267 (915)
++++.||.+++||+.++.+...+
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999987766
No 106
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.5e-25 Score=242.26 Aligned_cols=227 Identities=14% Similarity=0.225 Sum_probs=185.1
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002502 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (915)
.+.+|++.|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8889999999999999999765 3466788999999999999985 68999999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcc-eEEEEEecCCCCEEE
Q 002502 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~ 159 (915)
|+|||+.+++.+..+..|.+.|.+++|+|++.+|++++.||.|++||++++ .....+.+|.+. +..+.|.| +++.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~-~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAK-RKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcC-CCCeEE
Confidence 999999999999999999999999999999999999999999999999988 456667778654 45678888 556666
Q ss_pred EEE----CCCcEEEEECCCCCCc-eEEecC-CCCeeEEEEEeCCCcCEEEEEE-CCCeEEEEECCCCcEEEEecC-CccC
Q 002502 160 SAS----LDRTIKIWNLGSPDPN-FTLDAH-QKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG-HTHN 231 (915)
Q Consensus 160 ~~~----~dg~i~i~d~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~ 231 (915)
+++ .|+.|++||+++.... .....+ ...+....|+++++ ++++++ .|+.|++||+.+++.+..... +..+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 544 4789999999876533 333322 33455566777776 677776 599999999998887665543 3446
Q ss_pred eEEEEEeCC
Q 002502 232 VSAVCFHPE 240 (915)
Q Consensus 232 v~~v~~~~~ 240 (915)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 778888885
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.8e-25 Score=246.49 Aligned_cols=284 Identities=21% Similarity=0.335 Sum_probs=237.0
Q ss_pred cCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC------------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC
Q 002502 56 TELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNT------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~--~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 121 (915)
+...|.++..+|+|..+++|+ .||.+++|+... .+.+.++..|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 799999998642 233456678999999999999999999999999
Q ss_pred eEEEEECCC-----------------CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC
Q 002502 122 LIKLWDWEK-----------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 122 ~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 184 (915)
.|.||.... .|+....+.+|...|..++|+| ++.+|++++.|++|.+|+..+.+.+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999998772 1457788999999999999999 9999999999999999999999999999999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCc------cCeEEEEEeCCCCEEEEEE----cCCeEE
Q 002502 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------HNVSAVCFHPELPIIITGS----EDGTVR 254 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~~~l~~~~----~dg~v~ 254 (915)
.+.|..+.|.|-|+ |+++-++|++|++|++.+....+.+..+. ..+..+.|+|||.+|++.. .-.++.
T Consensus 171 ~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999998 99999999999999988777777665543 2477899999999999853 234689
Q ss_pred EEeCCCceeeeeeccCCccEEEEEEecC-----CC------------eEEEEecCCeEEEecCCCc-ceeEEcCCCcEEE
Q 002502 255 IWHATTYRLENTLNYGLERVWAIGYMKS-----SR------------RIVIGYDEGTIMVKIGREE-PVASMDNSGKIIW 316 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~s~~-----~~------------~l~~g~~dg~v~i~~~~~~-~~~~~~~~g~~~~ 316 (915)
|.+-.+++.-..+-+|..++.++.|+|. .+ .+|+|+.|+.+.||..... |++...
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------- 321 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------- 321 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------
Confidence 9998888988999999999999999983 11 6788999999999954322 221111
Q ss_pred EeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002502 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 317 ~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
.-....+..++|+|||..|.+|+ ||++.++...
T Consensus 322 ---------------------------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 322 ---------------------------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ---------------------------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 01122457899999999998888 9999988654
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=7e-24 Score=221.49 Aligned_cols=426 Identities=14% Similarity=0.225 Sum_probs=284.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECCCCc--eeEE
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTMD--KVKV 94 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~g~~dg~i~vwd~~~~~--~~~~ 94 (915)
..+|.|.+ .+|.|. ...|.+||..+......+.+|..+|+|+.|-|+.+ ++++|+.|+.|.+|.+.... ++..
T Consensus 19 v~sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 19 VSSWGPGG-LVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccccc-eEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 34555544 355554 67899999877777788999999999999999887 89999999999999987433 3455
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-eEEEEeecC--CcceEEEEEecC-CCCEEEEEECCCcEEEE
Q 002502 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGH--SHYVMQVTFNPK-DTNTFASASLDRTIKIW 170 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~i~~~~~~p~-~~~~l~~~~~dg~i~i~ 170 (915)
+.+|.. .+++++.....+...+.|+++.+||.+... .+...+.-. .....|+++.|. +.-.+++|+.+..|.++
T Consensus 97 ~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 97 IQGHCK--ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred ecCcce--eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 566554 445555433333333789999999995442 122222211 222345555552 23345667777777777
Q ss_pred ECCCC--CCceEEecCCCCeeEEEEEeCCC-cCEEEEEECCCeEEEEECCCCc---------------------EEE---
Q 002502 171 NLGSP--DPNFTLDAHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKS---------------------CVQ--- 223 (915)
Q Consensus 171 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~---------------------~~~--- 223 (915)
.-... +....+.+|..-|.+++|...+. ..++++++.|..|+||.+.-+. ...
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 65433 34567789999999999987766 6688899999999999864321 111
Q ss_pred -------EecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc--ee-----eeeeccCCccEEEEEEecCCCeEEEE
Q 002502 224 -------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RL-----ENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 224 -------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~--~~-----~~~~~~~~~~v~~i~~s~~~~~l~~g 289 (915)
.+.+|...|.++.|+|.+..|++++.|.++.+|...+. -- +....+.....+...|+|+++.+++-
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 12489999999999999999999999999999986543 22 22233334568999999999999999
Q ss_pred ecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEE
Q 002502 290 YDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVV 369 (915)
Q Consensus 290 ~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~la 369 (915)
+..|..++|-..+....... .-+..+...++.+.|+|.|.||.
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~-------------------------------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQE-------------------------------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred cccCcEEEEeccCccceeec-------------------------------------cccccccccceeeeecCCCCEEE
Confidence 99999999852221111110 11244555677888888888777
Q ss_pred EEc-CCcEEEEEeec----c----c-ccCccceeEEEEec-CCcEEEEecCCeEEEeccC--------------cc----
Q 002502 370 VCG-DGEYIIYTALA----W----R-NRSFGSALEFVWSS-DGEYAVRESSSKIKIFSKN--------------FQ---- 420 (915)
Q Consensus 370 v~~-~~~~~i~~~~~----~----~-~~~~~~~~~~~~s~-dg~~l~~~~~~~v~v~~~~--------------~~---- 420 (915)
+.+ |.+.++|..-. | | ..+....+|+++-+ +-+++-.+....+++|+.. +.
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~ 457 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDE 457 (764)
T ss_pred EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchh
Confidence 666 77777763321 1 1 11223446676666 3333333334556666510 00
Q ss_pred -----------------------------------------------------------ee--------eeeecCcccce
Q 002502 421 -----------------------------------------------------------EK--------RSVRPTFSAER 433 (915)
Q Consensus 421 -----------------------------------------------------------~~--------~~~~~~~s~~~ 433 (915)
+. .....+.+|+
T Consensus 458 ~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~- 536 (764)
T KOG1063|consen 458 LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT- 536 (764)
T ss_pred cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-
Confidence 00 0000012222
Q ss_pred eecCcEEEEeeCC------eEEEEeccCCcEEEEEec---cccEEEEcCCCCEEEEEeCCeEEEEE
Q 002502 434 IYGGTLLAMCSND------FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 434 i~~g~~La~~~~~------~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (915)
|+++|++... .|++|+..+...+..+.+ .|+.++|||||++|++++.|+..-+|
T Consensus 537 ---gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 537 ---GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred ---CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 7788876543 799999988877776653 89999999999999999999999876
No 109
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.1e-25 Score=218.83 Aligned_cols=249 Identities=22% Similarity=0.370 Sum_probs=213.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEECCCCcee----EEEEecCCCEEEEEEeCCCCEEEEEe
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA----KSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (915)
+.+...++.||+++|.+++|.-..+ .+++++.|.++++|-++.+... +.-.+|..+|.++...++|..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 3456678899999999999876544 4999999999999998877533 33458999999999999999999999
Q ss_pred CCCeEEEEECC-------------------------CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 77 DDMFIRVYNYN-------------------------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 77 ~dg~i~vwd~~-------------------------~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.|.+|.+|+.. ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 99999999931 1234567789999999999998 567999999999999999998
Q ss_pred ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC---CceEEecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
.....+. ....+.++.++| ..++|++|+.|..|++||.+++. ..+++.+|..-|.++.|+|.... .|++|+.|
T Consensus 292 -~~~~~~~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D 367 (423)
T KOG0313|consen 292 -GLKSTLT-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYD 367 (423)
T ss_pred -cceeeee-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecC
Confidence 4444433 345689999999 89999999999999999998764 34678899999999999998764 79999999
Q ss_pred CeEEEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 209 HTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 209 g~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
+++++||+++.+ ++..+.+|...|.++.|... ..|++||.|.+|+|+..
T Consensus 368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKG 417 (423)
T ss_pred CeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEecc
Confidence 999999999877 99999999999999999864 58999999999999864
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=221.76 Aligned_cols=244 Identities=21% Similarity=0.329 Sum_probs=211.7
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee----EE-------------E-ecCCCCEEEEEEcCCC
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV----KV-------------F-EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~----~~-------------~-~~~~~~i~~l~~s~~~ 111 (915)
...+..|..+|.+++++|++++.++++.+|+|.-|++.+++.. .. - +.|...|.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556679999999999999999999999999999999887643 11 0 2677889999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002502 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
++|++|+.|..|.||+.++. ...+.+.+|.+.|.+++|-. ..+.+++++.|++|++|++.....+.++.+|...|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999998 67778999999999999997 78899999999999999999988899999999999999
Q ss_pred EEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC-
Q 002502 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
....... .+.+|+.|+++++|++. -.....+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+++.+....
T Consensus 293 daL~reR--~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRER--CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcccc--eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 8876655 67778899999999994 4445567788889999999876 57999999999999999988877654321
Q ss_pred -----------CccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 271 -----------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 271 -----------~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
...|++++..|...++++|+.+|.|++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12688999999999999999999999983
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.2e-22 Score=214.49 Aligned_cols=277 Identities=19% Similarity=0.275 Sum_probs=234.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002502 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
-.|+.+-+.++|.|+|.+|.+++.||.|++|+..+- +...++..+...|.+++- ++.+|++|+.+++|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 369999999999999999999999999999997665 444555546677777765 55589999999999999999988
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.-..+....-++++++|+.+|++++.||+|-.|++.+.... .....+.+|..+|.++.|+| .+++|++.+.||.|++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEE
Confidence 77667666788999999999999999999999999999887 67788899999999999999 89999999999999999
Q ss_pred ECCCCCCceEEecC--------CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC--CccCeEEEEEeCC
Q 002502 171 NLGSPDPNFTLDAH--------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPE 240 (915)
Q Consensus 171 d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~ 240 (915)
|+.++....++.+- ...+..++|+|++. .+++.+.|+.|++|+..++.....+.. +...++.+.|+|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCC--eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 99988766655321 34567889999976 588888999999999998888777654 3445999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
|+|||+++.||.|.|||..+... ......|.+++|.|+.+.+..-...|..-++
T Consensus 244 G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999987222 3344789999999999988887777776665
No 112
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=223.18 Aligned_cols=287 Identities=15% Similarity=0.253 Sum_probs=232.7
Q ss_pred eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 49 MAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..+..++.+|.+.|..|+++. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 445678899999999999987 7899999999999999999999999999999999999987 5689999999999999
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC
Q 002502 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
++.. +..++.+. ..+..+.-+. .++.|++|+. .|.|||.....|+..+......|.++.|+|.... +|+++++
T Consensus 136 ~~~~--p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas~~s 208 (433)
T KOG0268|consen 136 IDGP--PLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILASCAS 208 (433)
T ss_pred ccCC--cceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch-heeeecc
Confidence 8874 44444433 3456666555 6778888874 6899999999999999988999999999998775 7888889
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCCccEEEEEEecCCCeE
Q 002502 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l 286 (915)
|+.|.+||++++.+++.+. ....-..|+|+|.+-.+.+|++|..++.||++... ++.....|.+.|.++.|||.|+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999887765 34456789999988888999999999999998754 677888888999999999999999
Q ss_pred EEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002502 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (915)
Q Consensus 287 ~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (915)
++|+-|.+|+|+-.+......+..+ + .-..+.++.||.|.+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYht----------------------------k-----------RMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHT----------------------------K-----------RMQHVFCVKYSMDSK 328 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhH----------------------------h-----------hhheeeEEEEecccc
Confidence 9999999999953322211111000 0 001345788888888
Q ss_pred EEEEEc-CCcEEEEEeecc
Q 002502 367 FVVVCG-DGEYIIYTALAW 384 (915)
Q Consensus 367 ~lav~~-~~~~~i~~~~~~ 384 (915)
++.+|+ ++++.+|....+
T Consensus 329 yi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEecCCCcceeeeecchh
Confidence 888887 678888866554
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=226.41 Aligned_cols=285 Identities=17% Similarity=0.255 Sum_probs=231.7
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
....+..|.+.|..+.|-++...|++|+.|..|.+|+....+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 334566799999999999999999999999999999987666 567777888899999999999999999999999999
Q ss_pred ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 127 d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
++... ....++.+|...|+++.|.. ....+++|+.|.+|+.||+....+..+.. ....++.|..+ .. .+++|.
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~--~~~SgH 319 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS--DVISGH 319 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce--eeeecc
Confidence 99988 77888999999999999987 55559999999999999998877666553 23445555554 22 588999
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC----CccEEEEEEecC
Q 002502 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKS 282 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~i~~s~~ 282 (915)
.|++|++||.++..+..+...+. .|+++..+++|..|++++.|.++.+.|+++......+... ....+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999999988665 8999999999999999999999999999998887776543 234788999999
Q ss_pred CCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002502 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
+.++++|+.||.|+||......+... .+ ..++...+.+++|+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~-------------------------------------l~-~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKV-------------------------------------LS-LSTSNAAITSLSWN 440 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEE-------------------------------------ec-cCCCCcceEEEEEc
Confidence 99999999999999984332221110 00 12222256788888
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002502 363 PNGRFVVVCG-DGEYIIY 379 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (915)
|.|+.|+.++ ++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 8888888777 5555555
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=5.3e-25 Score=221.79 Aligned_cols=238 Identities=16% Similarity=0.286 Sum_probs=188.8
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~----~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
..+++|...|.++++.|.|.+|++|+.|..|++||+..+.. .+.+ ......|+++.|+++|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 34667888999999999999999999999999999975532 1222 234557999999999999999998899999
Q ss_pred EECCCCceEEEE------------eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE-E-----ecCCCC
Q 002502 126 WDWEKGWMCTQI------------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-L-----DAHQKG 187 (915)
Q Consensus 126 wd~~~~~~~~~~------------~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~-----~~~~~~ 187 (915)
+|-+.. .+... .++|...++|.+|+|...+.|++++.||++++||+...+.... + .+..-+
T Consensus 241 ~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 997765 33332 3478899999999998889999999999999999987654332 2 233456
Q ss_pred eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc---EEEEecCCcc--CeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce
Q 002502 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++|++++. +|++|+.||.|.+|+..... ....-..|.. .|+||.||++|++|++-|.|+++++||+++.+
T Consensus 320 ~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 88999999988 79999999999999975432 2233345665 89999999999999999999999999999766
Q ss_pred -eeeeecc--CCccEEEEEEecCCCeEEEEec
Q 002502 263 -LENTLNY--GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 263 -~~~~~~~--~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
++.+... ..-.-+.++|||+.++|++|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 3333222 1234567999999999999875
No 115
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.2e-23 Score=231.42 Aligned_cols=223 Identities=16% Similarity=0.226 Sum_probs=181.3
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCce-------EEEEeecCCcceE
Q 002502 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVM 146 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~i~ 146 (915)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998887788889999999999999997 78999999999999999986421 2345778999999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec
Q 002502 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+++|+|.....+++++.|++|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|++||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999444456899999999999999988776665 567899999999987 78889999999999999999999999
Q ss_pred CCccCeEEE-----EEeCCCCEEEEEEcCC----eEEEEeCCC-ceeeeeecc--CCccEEEEEEecCCCeEEEEecCCe
Q 002502 227 GHTHNVSAV-----CFHPELPIIITGSEDG----TVRIWHATT-YRLENTLNY--GLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 227 ~~~~~v~~v-----~~~~~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~i~~s~~~~~l~~g~~dg~ 294 (915)
+|.+.+.+. .|++++.+|++++.++ .|+|||+++ .+++..+.. +.+.+......++|.++++|..|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 998765432 3458889999988774 799999985 455544432 3333444444556889999999999
Q ss_pred EEEecC
Q 002502 295 IMVKIG 300 (915)
Q Consensus 295 v~i~~~ 300 (915)
|++|..
T Consensus 287 Ir~~e~ 292 (568)
T PTZ00420 287 CRYYQH 292 (568)
T ss_pred EEEEEc
Confidence 999753
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=214.67 Aligned_cols=236 Identities=19% Similarity=0.316 Sum_probs=212.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002502 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
..+.++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.++|+...+++++.|..|+||..... .....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCccc
Confidence 35788888888889999999999999999999999999999999999999999999999999999999998876 56677
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
...|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|+|+|. ++.+|..||.|+|||
T Consensus 299 ~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEE
Confidence 788999999999999 899999999999999999999987766543 334589999999997 889999999999999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCC-ccEEEEEEecCCCeEEEEecCCe
Q 002502 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~g~~dg~ 294 (915)
+.++..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.... ..+.+++|.+.|++|++++.+=.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 99999999999999999999999999999999999999999999888777766542 36999999999999999976655
Q ss_pred EEE
Q 002502 295 IMV 297 (915)
Q Consensus 295 v~i 297 (915)
|++
T Consensus 456 Vy~ 458 (506)
T KOG0289|consen 456 VYI 458 (506)
T ss_pred EEE
Confidence 554
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=4.6e-25 Score=208.30 Aligned_cols=289 Identities=19% Similarity=0.336 Sum_probs=220.0
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------------C------ceeEEEecCCCCEEEEEEcCCC
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT------------M------DKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~------------~------~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
...+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++-.|.+.|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999861 1 2356777899999999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEe--ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE---ecCCC
Q 002502 112 PYVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQK 186 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~ 186 (915)
..|++|+.|++|+++|.... ...+-+ .....+|.++.|+| .+.++++|....++++||+++-++...- ..|..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred heEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999999754 122111 12346799999999 9999999999999999999886654332 46888
Q ss_pred CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC-Cc-cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceee
Q 002502 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
.|+++.+++.++ +.++++.||.|++||--+++|+.++.. |. ..|.+..|..+|++|++.+.|..+++|.+.+++++
T Consensus 263 ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 263 AITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ceeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 999999999988 899999999999999988999888853 43 46899999999999999999999999999999999
Q ss_pred eeeccCCc--c---EEEEEEecCCCeEEEEec-CCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccC
Q 002502 265 NTLNYGLE--R---VWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTD 338 (915)
Q Consensus 265 ~~~~~~~~--~---v~~i~~s~~~~~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 338 (915)
..+.+... + -+...|+....++..-.+ .+.+.- |+..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs------------------------------------WdaRt 384 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS------------------------------------WDART 384 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceee------------------------------------ccccc
Confidence 88765411 1 112233333333222111 111111 33333
Q ss_pred CceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002502 339 GERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 339 g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
+.+..+- --.+...++.+.+||.+.-+.+|+ |-+..+|..
T Consensus 385 adr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 385 ADRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhc---ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3333221 134566889999999999888888 667888854
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=216.38 Aligned_cols=279 Identities=17% Similarity=0.305 Sum_probs=229.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--CceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.++|++|.|||..+.|++++.||.++||.+.. ...++++.....||.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998754 346667777788999999999999 889999999999999998765
Q ss_pred eEE--EecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 92 VKV--FEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 92 ~~~--~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+. ..++. ..+.....+|++++|++.+..|.|.+....++ .....++ ..+.|..++|+. ++..|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 433 23333 35778899999999999999999999998887 4444443 457799999997 889999999999999
Q ss_pred EEECCCCCCceEEecCCCCee--EEEEEeCCCcCEEEEEECCCeEEEEECCC------CcEEEEecCCccCeEEEEEeCC
Q 002502 169 IWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~v~~~~~ 240 (915)
+||++...++.++.. .+.|. +++.++++. |+++|+..|.|.|||..+ .+++..+......|+++.|+|+
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc--eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999988877753 44444 455556665 999999999999999653 4577777777888999999999
Q ss_pred CCEEEEEEc--CCeEEEEeCCCceeeeeec---cCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 241 LPIIITGSE--DGTVRIWHATTYRLENTLN---YGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 241 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~---~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
+++|+.+|. ...+++-++.+......+. ...+.|+|++|||.|.++|+|...|.+.+|.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 999887764 5679999887766554443 3456799999999999999999999999973
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.6e-24 Score=202.20 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=211.0
Q ss_pred ecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-Ccee-EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 55 VTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 55 ~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~~-~~~~-~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..+..|.+++||| ...++++|+.||+||+|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 455666889999999999986 3333 334578999999999999999999999999999999998
Q ss_pred ceEEEEeecCCcceEEEEEecCCCC--EEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 132 WMCTQIFEGHSHYVMQVTFNPKDTN--TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
....+..|..+|.++.|-+ ..+ .|++|+.|++|++||.++..++.++. ....+.++.. ..++++++..++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv----~~pm~vVata~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV----LYPMAVVATAER 176 (347)
T ss_pred --CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc----cCceeEEEecCC
Confidence 3455677999999999987 444 89999999999999999999888876 3455566554 445899999999
Q ss_pred eEEEEECCCCcEEEEe--cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc--eeeeeeccCC---------ccEEE
Q 002502 210 TAKVWDYQTKSCVQTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGL---------ERVWA 276 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~---------~~v~~ 276 (915)
.|.+|+++++...... ....-.+.|++..++....+.|+-+|.+.|..+..+ +.-.+++.|. ..|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 9999999865432211 123345889999999888899999999999988876 2223333332 35788
Q ss_pred EEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002502 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|+|.-..|++.+.||++.+|..... ..++....+..++
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar----------------------------------------~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDAR----------------------------------------TKLKTSETHPQPI 296 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhh----------------------------------------hhhhccCcCCCcc
Confidence 999999999999999999999742221 1122235566788
Q ss_pred ceEEECCCCCEEEEEc
Q 002502 357 QSLKHNPNGRFVVVCG 372 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~ 372 (915)
++..|+.+|.++|.+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 8999999999888653
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=8.2e-25 Score=218.68 Aligned_cols=246 Identities=24% Similarity=0.405 Sum_probs=206.5
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCc----------eeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002502 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT----------MAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (915)
.|.+.|..+.+-|..+ .+|+++..+.|.|||+.+.. .-..+.+|...-.++.|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4888999999999776 45566778999999986532 112677898878889999864 46889999999
Q ss_pred EEEEECCCCc-------eeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCC-CceEEEEeecCCcceEEEEEe
Q 002502 81 IRVYNYNTMD-------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK-GWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~~~~-------~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~ 151 (915)
|++||++... ....+.+|.+.|..++|++.. ..++++++|+.+.|||.++ ..++.....+|...|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997533 345678999999999999954 5678999999999999995 336667788999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-----------
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------- 219 (915)
|.++..||+|+.|++|.+||+++. ++..++.+|...|.++.|+|.... +|++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccccccccChhhhcc
Confidence 999999999999999999999885 467788999999999999998765 8999999999999998631
Q ss_pred ---cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCC
Q 002502 220 ---SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ---~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
+.+..-.||...|..+.|+|+.+ .|++.++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23456678999999999999987 56678899999999976
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1e-24 Score=218.68 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=234.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---ceeEEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.|.+-|.++.+|...+++.||+ .|.|+|||+... ..+..+.. .+..|+++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4889999999999999999998 678999998653 23333332 45679999999999999999999999999998
Q ss_pred CCceeEE--EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 88 TMDKVKV--FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 88 ~~~~~~~--~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
....... +....-....++.+||.+..++|..||.|.|||+.+. ..++.+.+|...+.||..++ ++..|.+|+.|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCceeecCCCcc
Confidence 6544322 2222234567899999999999999999999999987 88899999999999999999 999999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEE
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 245 (915)
+|+.||++.+....... ....|.++.++|.++ ++++|-.++.+.+.... +.....+..|...|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d--WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD--WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCcc--ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence 99999999987665543 567899999999988 89999999999998865 555566777899999999999999999
Q ss_pred EEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+.+.|+-+..|...-|..+...+.. ..|.++..|.|.++|++|+.|..-.+
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred ecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEE
Confidence 9999999999998888777666544 78999999999999999999876555
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-24 Score=198.88 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=201.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc--eEEEEeecCCcceEEEEE-ecCCCCEEEEEECCCcEEEEEC
Q 002502 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~-~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
..|.+.|..+...--|++|++|+.|++|+|+..+++. .....+.+|.++|..+.| +|+-+++|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889888888889999999999999999998664 567788999999999999 6778999999999999999998
Q ss_pred CCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC---cEEEEecCCccCeEEEEEeCC---C---
Q 002502 173 GSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTHNVSAVCFHPE---L--- 241 (915)
Q Consensus 173 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~---~--- 241 (915)
.+++- ......|...|++++|.|.+-+..|++++.||.|.+.++++. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 77743 334567999999999999998889999999999999998753 223445678889999999996 4
Q ss_pred --------CEEEEEEcCCeEEEEeCCCce--eeeeeccCCccEEEEEEecCC----CeEEEEecCCeEEEecCCCcceeE
Q 002502 242 --------PIIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMVKIGREEPVAS 307 (915)
Q Consensus 242 --------~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~s~~~----~~l~~g~~dg~v~i~~~~~~~~~~ 307 (915)
+.|++|+.|+.|+||+..+++ +..++..|.+.|..++|.|.- ..||+++.||.+.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e---- 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE---- 243 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc----
Confidence 469999999999999987754 566789999999999999974 57999999999999743211
Q ss_pred EcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002502 308 MDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 308 ~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.-+-..+-+......+-.++||+.|.+|++++ |+++.+|.-
T Consensus 244 ---------------------------------~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 244 ---------------------------------YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ---------------------------------cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 00000111222334567889999999999887 888888843
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.4e-24 Score=201.48 Aligned_cols=246 Identities=19% Similarity=0.327 Sum_probs=215.9
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
.+++.+.+|...|..++-......+.+++.|.+-+||.++++.++..+.+|.+.|+++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45667889999999999888888889999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCCC---------------------------------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 128 ------WEKG---------------------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 128 ------~~~~---------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.... +.+...+.+|...|.+..|.. .++.+++++.|++..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 1110 234456778999999999998 899999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEE
Q 002502 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITG 247 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 247 (915)
+||..++.++..+.+|....+.++-+|... ++++.+.|.+.++||++.. ..+..|++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcce--EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999998887765 8999999999999999853 4578899999999999999875 58899
Q ss_pred EcCCeEEEEeCCCce-eeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 248 SEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+.|.+|++||+++.+ ++.++... .++..++.+..+..|++-.++..|+++
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred CCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEE
Confidence 999999999999876 45555544 778889999888899988888888883
No 124
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.3e-23 Score=184.68 Aligned_cols=245 Identities=19% Similarity=0.302 Sum_probs=206.2
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-----eeEEEEecCCCEEEEEEeCC----CCEEEEEeC-CC
Q 002502 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTELPVRSAKFVAR----KQWVVAGAD-DM 79 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~----~~~l~~g~~-dg 79 (915)
.-+.|.+.|.|.+|||+|.+||+|+.|..|++.-++... .-..+..|++.|+.++|-.+ |..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 345799999999999999999999999999997654332 22457789999999999654 456776654 77
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-------CCcceEEEEEec
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~p 152 (915)
.|++-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-. .+..++.. ..+.|.+++..|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECC
Confidence 888889999999999999999998763 335778999999999999999976 55555432 135689999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC----cEEEEecCC
Q 002502 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGH 228 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 228 (915)
.+.+|++|..|.+..+||++.+.+++.+..|...|.|+.|+|... |+++++.|..|++-|++.. -++.....|
T Consensus 242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce--EEEEecccceEEEeecccchhhcCceEEEEec
Confidence 899999999999999999999999999999999999999999877 9999999999999998732 134455668
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 229 THNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 229 ~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
...+..+.|+|+.-.+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8888999999998889999999999999754
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=197.24 Aligned_cols=252 Identities=19% Similarity=0.251 Sum_probs=209.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~ 82 (915)
.+.-++|.+.|..+...--|++|||++.|++|+||..+.. +++.++.+|.+||..++|.. -|..||+++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3455689999999999999999999999999999998764 46778999999999999976 799999999999999
Q ss_pred EEECCCCcee--EEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCC--CceEEEEeecCCcceEEEEEecCC--
Q 002502 83 VYNYNTMDKV--KVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEK--GWMCTQIFEGHSHYVMQVTFNPKD-- 154 (915)
Q Consensus 83 vwd~~~~~~~--~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~p~~-- 154 (915)
||...+++.. .....|...|++++|-|. |-.|++++.||.|.|.+.++ ++...++...|.-.|.+++|.|..
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9998887543 445689999999999986 56789999999999998874 455666778899999999999831
Q ss_pred C-----------CEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCC--CcCEEEEEECCCeEEEEECCCC
Q 002502 155 T-----------NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGG--DKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 155 ~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
+ ..|++|+.|..|+||+..++. ...++.+|..-|..++|.|.- ...+|++++.||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 469999999999999987753 334578999999999999975 2337999999999999987631
Q ss_pred c---EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 220 S---CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 ~---~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
. ....+......+..+.||+.|.+|++++.|+.|.+|.-.
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122334456789999999999999999999999999743
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=196.10 Aligned_cols=283 Identities=15% Similarity=0.193 Sum_probs=213.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCcee--EEE--EecCCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KSF--EVTELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~--~~~--~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~ 82 (915)
...|++|++.|++++||.||++||+++.|+.|+||+++..... +.+ ...-+..+.+.|+||-+-+++... ...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3568899999999999999999999999999999998764211 111 112224578999999887766654 45899
Q ss_pred EEECCC---Ccee---------EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEE
Q 002502 83 VYNYNT---MDKV---------KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (915)
Q Consensus 83 vwd~~~---~~~~---------~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 150 (915)
+|-+.. |... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++ | +....+......-...+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceee
Confidence 997642 1111 1112456667778888888999999999999999999 4 455555555555677889
Q ss_pred ecCCCCEEEEEECCCcEEEEECC---CC-----CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC----
Q 002502 151 NPKDTNTFASASLDRTIKIWNLG---SP-----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT---- 218 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 218 (915)
+| ++.++++++..-.|++|.+- .| ...+.+.+|...|...+|+++.. .+++.+.||++++||+.-
T Consensus 237 SP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 237 SP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred CC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeeccceEec
Confidence 99 99999999999999999862 22 34577899999999999999988 599999999999999742
Q ss_pred Cc---EEEEe----cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeec-cCCccEEEEEEecCCCeEEEEe
Q 002502 219 KS---CVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 219 ~~---~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
++ .++.. ....+....+.++|+|+.|+.+. ...+++|..++|+...++. .|...|.+++|+++|+++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence 22 12222 11233445899999999888765 5589999999988766554 5678999999999999999887
Q ss_pred cCCeEE
Q 002502 291 DEGTIM 296 (915)
Q Consensus 291 ~dg~v~ 296 (915)
+.-...
T Consensus 393 dr~vrv 398 (420)
T KOG2096|consen 393 DRYVRV 398 (420)
T ss_pred ceeeee
Confidence 654333
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=195.78 Aligned_cols=288 Identities=17% Similarity=0.247 Sum_probs=211.9
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceE----E-EEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC----T-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~-~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+++|.+.|++++|+.||++|++++.|++|++|+++..... . .... -+..+.+.|.|+-...++.+-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 46799999999999999999999999999999999864111 1 1111 123578999994445555555666799
Q ss_pred EEECCCCC---CceE--------E-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002502 169 IWNLGSPD---PNFT--------L-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 169 i~d~~~~~---~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 236 (915)
+|.+...+ .... + ..|...+..+-. .++..+|++++.|..|.+|+++ |+.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99774321 1111 1 123334444444 4444599999999999999998 999999988777888899
Q ss_pred EeCCCCEEEEEEcCCeEEEEeCC---Cc-----eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEE
Q 002502 237 FHPELPIIITGSEDGTVRIWHAT---TY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (915)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~---~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~ 308 (915)
.||+|++|++++..-.|++|.+- .| ..+..+.+|...|..++|++++..+++.+.||.+++|...-+
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr----- 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR----- 310 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----
Confidence 99999999999999999999853 22 245678899999999999999999999999999999843322
Q ss_pred cCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc---
Q 002502 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--- 385 (915)
Q Consensus 309 ~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~--- 385 (915)
|....+-.+ +..|. ..+......+-.+.++|+|+.||++....+.+|.....+
T Consensus 311 -------Y~~~qDpk~-----------Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 311 -------YEAGQDPKI-----------LKEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred -------EecCCCchH-----------hhcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 111111000 11121 112223345568999999999999999999999766543
Q ss_pred ---ccCccceeEEEEecCCcEEEEecCCeEEEe
Q 002502 386 ---NRSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (915)
Q Consensus 386 ---~~~~~~~~~~~~s~dg~~l~~~~~~~v~v~ 415 (915)
..+.+.|.+++|+++|+|+++..+..++++
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 335578999999999999999999999987
No 128
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.3e-24 Score=227.68 Aligned_cols=250 Identities=20% Similarity=0.393 Sum_probs=195.0
Q ss_pred eEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--------------------------------C-------
Q 002502 92 VKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--------------------------------G------- 131 (915)
Q Consensus 92 ~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------- 131 (915)
.+.+. .|.+.|++|.||+||+|||+|+.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998655 0
Q ss_pred --------------------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEE
Q 002502 132 --------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (915)
Q Consensus 132 --------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 191 (915)
..+...+.+|...|..+.|+. +++|++++.|.+|++|++...+++..|. |...|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 122334668999999999994 8899999999999999999888888876 99999999
Q ss_pred EEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC-
Q 002502 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (915)
+|+|..++ |+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|+....++......+
T Consensus 416 aFnPvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99998766 99999999999999998766655444 4478999999999999999999999999998877765544321
Q ss_pred -------CccEEEEEEecCCC-eEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCcee
Q 002502 271 -------LERVWAIGYMKSSR-RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 271 -------~~~v~~i~~s~~~~-~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
..+|+.+.|.|... .+.+.+.|..|+|..+++..+..
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~----------------------------------- 538 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH----------------------------------- 538 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh-----------------------------------
Confidence 24799999998644 58888999999985443322111
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecc
Q 002502 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAW 384 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~ 384 (915)
.++...... .-....|+.||++|++++ |..+++|.....
T Consensus 539 --KfKG~~n~~-SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 539 --KFKGFRNTS-SQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred --hhcccccCC-cceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 011111111 113557888899888888 678888876544
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.5e-24 Score=212.87 Aligned_cols=253 Identities=17% Similarity=0.271 Sum_probs=216.3
Q ss_pred EEEEEEc-CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE
Q 002502 29 WILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (915)
Q Consensus 29 ~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 107 (915)
+++++.. ...+.+|.+...........-.++|.|++-+|.|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555443 456899998776555544456789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECCC--------CceEEEEeecCCcceEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCc
Q 002502 108 HPTLPYVLSSSDDMLIKLWDWEK--------GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN 178 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~ 178 (915)
+.||.+|++|+.||.|.+|++.. ...+...+..|.-+|+.+...+. ...++++++.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999997632 23567788899999999998873 3568999999999999999999877
Q ss_pred eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC----------------cEEEEecCCcc--CeEEEEEeCC
Q 002502 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------------SCVQTLEGHTH--NVSAVCFHPE 240 (915)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~v~~~~~ 240 (915)
.++. ....+.+++..|... .+.+|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-|
T Consensus 212 lti~-fp~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEe-cCCcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 7765 577899999999887 7999999999999887432 23556778887 8999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCC
Q 002502 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR 284 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~ 284 (915)
|.+|++|+.||.|++||+.+.++++++....++|+.+.+.|-.+
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 99999999999999999999999999987778999999876543
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.2e-23 Score=210.47 Aligned_cols=244 Identities=22% Similarity=0.352 Sum_probs=204.7
Q ss_pred ecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce----------eEEEecCCCCEEEEEEcCCCC-EEEEEEcCCe
Q 002502 55 VTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK----------VKVFEAHTDYIRCVAVHPTLP-YVLSSSDDML 122 (915)
Q Consensus 55 ~~~~~v~~~~~s~~~~-~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~ 122 (915)
.|.+.|+.+..-|+.. .+++++..+.|.|||+.+... -..+.+|.+.=.+++|++... +|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 3888999999999765 455677889999999864221 126778888778899998643 7899999999
Q ss_pred EEEEECCCCc------eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC--CCCCceEEecCCCCeeEEEEE
Q 002502 123 IKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 123 i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~ 194 (915)
|++||+.... .....+.+|...|..++|+|...++|++++.|+.+.|||++ +.++.....+|..+|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997542 34567889999999999999999999999999999999999 566667778999999999999
Q ss_pred eCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCc-----------
Q 002502 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTY----------- 261 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~----------- 261 (915)
|-+. .+|++|+.|++|++||+|+ .+++.++.+|...|.++.|+|.. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 9875 4899999999999999997 45789999999999999999965 58889999999999998632
Q ss_pred ---eeeeeeccCCccEEEEEEecCCCe-EEEEecCCeEEEec
Q 002502 262 ---RLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKI 299 (915)
Q Consensus 262 ---~~~~~~~~~~~~v~~i~~s~~~~~-l~~g~~dg~v~i~~ 299 (915)
+++....+|...|..+.|+|...+ |++.++|+.+.||.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234566778889999999998765 55688999999984
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-23 Score=215.83 Aligned_cols=287 Identities=21% Similarity=0.326 Sum_probs=229.6
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE--EEEEeCCCeEE
Q 002502 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW--VVAGADDMFIR 82 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~g~~dg~i~ 82 (915)
-.+...+.||++.|+|++.+|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.++. ||++-.. .+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ 467 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVL 467 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceE
Confidence 34455678999999999999999999999999999999999999999887 5568999999997653 4443222 233
Q ss_pred E---------------------------------EECCCC---c-eeEEEecCCCCEEEEEEcCCCCEEEEEEcC---Ce
Q 002502 83 V---------------------------------YNYNTM---D-KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---ML 122 (915)
Q Consensus 83 v---------------------------------wd~~~~---~-~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~ 122 (915)
| |.-... + -+...-.|...|+.+.|+..|.||++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 3 322110 0 123334578899999999999999987653 57
Q ss_pred EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002502 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
|.|.++... .....|....+.|.++.|+| ...+|++++ ...|++||+.....+..+.....-|..++++|.|++ |
T Consensus 548 VliHQLSK~-~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn--l 622 (733)
T KOG0650|consen 548 VLIHQLSKR-KSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN--L 622 (733)
T ss_pred EEEEecccc-cccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe--E
Confidence 899998876 34455656677899999999 666777766 478999999888777777777888999999999985 9
Q ss_pred EEEECCCeEEEEECCCC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc---------eeeeeeccCCc
Q 002502 203 ITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY---------RLENTLNYGLE 272 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~ 272 (915)
+.|+.|+.+..+|+.-. ++.+++..|...+++++||+.-+++++|+.||++.++.-.-+ -++..+.+|..
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 99999999999999754 577888889999999999999999999999999999873321 13455666644
Q ss_pred c----EEEEEEecCCCeEEEEecCCeEEEe
Q 002502 273 R----VWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 273 ~----v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
. |..+.|+|...+|.+++.||++++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 3 8889999999999999999999986
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-22 Score=191.68 Aligned_cols=263 Identities=17% Similarity=0.278 Sum_probs=216.8
Q ss_pred EEEEEcCCeEEEEECCCC------------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002502 30 ILASLYSGTVCIWNYQSQ------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 30 la~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
+++|++...|.=+++.-. ..+..+..|.+++++++. ++.++|+|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 677777776666654321 123445679999999998 688999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002502 98 HTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
|.+.|+++.|.+.-. .|++|+.||.|.+|+... |.+...+++|.+.|+.++.+| .+.+-++.+.|+.++.||+-.+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcC
Confidence 999999999998765 899999999999999876 589999999999999999999 8888899999999999999988
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEE
Q 002502 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i 255 (915)
+.-+.+.-. ..-..+.|+|.|+ +++.+..+ .|-+|.+.+......+. ....+.++.|.. +..|++|+.|+.|++
T Consensus 160 r~a~v~~L~-~~at~v~w~~~Gd--~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLK-NKATLVSWSPQGD--HFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccC-CcceeeEEcCCCC--EEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEecCCceEEE
Confidence 876665532 2335599999888 57766654 68899988766655554 234566766664 468999999999999
Q ss_pred EeCCCceeeeeeccCCccEEEEEE--ecCCCeEEEEecCCeEEEecCCC
Q 002502 256 WHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~--s~~~~~l~~g~~dg~v~i~~~~~ 302 (915)
||.....+...+..|..+|.++.+ .|++.+|++++.||.|.+|....
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999989999999999999999884 45688999999999999996443
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=8.2e-23 Score=191.92 Aligned_cols=283 Identities=18% Similarity=0.292 Sum_probs=226.4
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCc-------e---eE-----EEEecCCCEEEEEEeC-CCCEEEE
Q 002502 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQT-------M---AK-----SFEVTELPVRSAKFVA-RKQWVVA 74 (915)
Q Consensus 12 ~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~-------~---~~-----~~~~~~~~v~~~~~s~-~~~~l~~ 74 (915)
..|.+.|.++...+ .|+++++|+.||.|.+||++... . +. .-.+|.-.|.++.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999999 57899999999999999997642 1 11 1124667899999999 5567788
Q ss_pred EeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC---CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEe
Q 002502 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (915)
++-|.+++|||.+|.+....|+ ..+.|.+-+|||- ..++++|..+-.|++.|+.+| ....++.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence 8899999999999998888887 4677888899884 347888999999999999999 8899999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-CCc--------------eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEEC
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSP-DPN--------------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~-~~~--------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
|...-.|++|+.||.|++||++.- .+. .+-..|.+.|+.++|..++. ++++++.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeec
Confidence 977888999999999999999753 111 12245778899999999888 7999999999999999
Q ss_pred CCCcEEEE-ec--CCcc----CeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEE
Q 002502 217 QTKSCVQT-LE--GHTH----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 217 ~~~~~~~~-~~--~~~~----~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g 289 (915)
.+|+.... +- .|+. .+. +. +-+...++---.++.+.++++-.|..+..+..|...+.+..+.|+-+...+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 88763211 10 0111 111 22 2333344444456889999999999999999998999999999999999999
Q ss_pred ecCCeEEEecC
Q 002502 290 YDEGTIMVKIG 300 (915)
Q Consensus 290 ~~dg~v~i~~~ 300 (915)
..|+.+..|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999854
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.8e-23 Score=206.12 Aligned_cols=289 Identities=19% Similarity=0.266 Sum_probs=228.1
Q ss_pred hhcccCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCCC----ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 002502 9 RKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~--~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i 81 (915)
...+-|.++|++++|||..+ .+|+|...|.|-+||+.+. .-+..+..|..+|.++.|+|.. ..+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34556899999999999765 7888999999999999533 3455677899999999999954 678899999999
Q ss_pred EEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
++-|++++..-..+. .....+..+.|+.+...++.+..=|.+.+||.+++......+.-|...|.+++++|-...+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998764433333 244567788999988888888888899999999886656667778889999999998889999
Q ss_pred EEECCCcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC----CCcEEEEecCCcc-
Q 002502 160 SASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ----TKSCVQTLEGHTH- 230 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~- 230 (915)
+++.|++.+|||++.-. +......|...|++..|+|.+. .|++.+.|..|+|||.. ...+...+. |..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 99999999999997632 2344467999999999999987 49999999999999973 223333333 221
Q ss_pred ---C--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCc-cEEE-EEEecCCC-eEEEEecCCeEEEecC
Q 002502 231 ---N--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWA-IGYMKSSR-RIVIGYDEGTIMVKIG 300 (915)
Q Consensus 231 ---~--v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~-i~~s~~~~-~l~~g~~dg~v~i~~~ 300 (915)
. .....|.|+..+|++|-.-..|-|+|-..++.+..+..+.. .|.+ ..|+|-+. +++.|+..|.+.+|..
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 1 33568999999999999989999999988888887665533 4443 57999988 4555666788877643
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.2e-22 Score=191.33 Aligned_cols=269 Identities=18% Similarity=0.217 Sum_probs=210.2
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
....|.++.|+|.++.|++++.||.+++|+.........++ |..++.+++|.++ ..+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 45679999999999999999999999999998875555554 8899999999975 47999999999999999987 34
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..+..|...|.|+.+++ ..+.+++|+.|++|++||.+.......+. ....|.++... ++ .|++|+.+..|.+||
T Consensus 88 ~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~--~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GN--RLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CC--EEEEeecCceEEEEE
Confidence 55677999999999998 78899999999999999998766555554 34478888764 34 699999999999999
Q ss_pred CCCCcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc----eeeeeeccC---------CccEEEEEEe
Q 002502 216 YQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYG---------LERVWAIGYM 280 (915)
Q Consensus 216 ~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~---------~~~v~~i~~s 280 (915)
+++........ ...-.+.++++.|++.-.++++-||.|.+=.+... +....++.| .-+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99866443222 23456889999998888899999999887555443 122233333 1368999999
Q ss_pred cCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002502 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (915)
|-.+.+++|+.||.|.+|.....+ + ++++...+..+..++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rK------------------------------------r----l~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRK------------------------------------R----LKQLAKYETSISSLS 281 (323)
T ss_pred cccceEEecCCCceEEEccCcchh------------------------------------h----hhhccCCCCceEEEE
Confidence 999999999999999998543321 1 112233344577899
Q ss_pred ECCCCCEEEEEcCC
Q 002502 361 HNPNGRFVVVCGDG 374 (915)
Q Consensus 361 ~s~~g~~lav~~~~ 374 (915)
|+.+|..||++++-
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999998743
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=212.86 Aligned_cols=282 Identities=21% Similarity=0.295 Sum_probs=233.3
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee--EEEecCCCCEEE-EEEcC-CCCEEEEEEcCCeE
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV--KVFEAHTDYIRC-VAVHP-TLPYVLSSSDDMLI 123 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~-l~~s~-~~~~l~~~~~dg~i 123 (915)
++.+.+.+|+..|+.++..+.. ++++++.||++++|+-...+.+ ..+.+|.+.|.+ +++-+ ++-.+++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4567888999999998876554 7999999999999997655544 346678887777 88875 44469999999999
Q ss_pred EEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEE
Q 002502 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
.+|...+. .+..++.+|...|+++.... ++ .+++||.|.++++|-+ ++....+.+|...|+.+...|.. .++
T Consensus 84 ~v~~~~~~-~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~---~~v 155 (745)
T KOG0301|consen 84 IVFKLSQA-EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN---TYV 155 (745)
T ss_pred EEEecCCC-CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC---cEE
Confidence 99999887 78899999999999998765 44 4999999999999976 45566689999999999999877 499
Q ss_pred EEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCC
Q 002502 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~ 283 (915)
+|+.|.+|++|.- ++.++++.+|...|..+++-+++ .+++++.||.|++|++ +|..+....+|..-+++++...++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 9999999999984 88899999999999999999985 4788899999999998 799999999999999999988899
Q ss_pred CeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002502 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (915)
Q Consensus 284 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (915)
+.++++++|++++||.... -.+.+ ......+.+..+-+
T Consensus 232 ~~Ivs~gEDrtlriW~~~e------------------~~q~I------------------------~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKDE------------------CVQVI------------------------TLPTTSIWSAKVLL 269 (745)
T ss_pred CeEEEecCCceEEEeecCc------------------eEEEE------------------------ecCccceEEEEEee
Confidence 9999999999999984331 00111 11122344667778
Q ss_pred CCCEEEEEcCCcEEEEEeecc
Q 002502 364 NGRFVVVCGDGEYIIYTALAW 384 (915)
Q Consensus 364 ~g~~lav~~~~~~~i~~~~~~ 384 (915)
+|..++.|+||.++||+....
T Consensus 270 NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 270 NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCCEEEeccCceEEEEEeccc
Confidence 899999999999999977643
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.1e-23 Score=193.53 Aligned_cols=279 Identities=10% Similarity=0.172 Sum_probs=217.8
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|-.+|++++||++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999988887
Q ss_pred CCCCEEEEEEcCCCCEEEE-EEcCCeEEEEECCCCceEEEEeecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 98 HTDYIRCVAVHPTLPYVLS-SSDDMLIKLWDWEKGWMCTQIFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
..++|+...|+|.....++ +--+..-.+-++..+ ....+... +..-.+..|.+ .++++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEe
Confidence 4679999999996543333 322333444444432 11122111 11122335777 899999999999999999
Q ss_pred CCCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-------CcE--EEEecC--CccCeEEEEEeC
Q 002502 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KSC--VQTLEG--HTHNVSAVCFHP 239 (915)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~--~~~~~~--~~~~v~~v~~~~ 239 (915)
..+.+.+..++-.. ..|..+.++..|+ ++++.+.|+.|+.|+++. +++ .+.++. ....-.+++|+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988887776555 7788899988887 799999999999999863 111 111111 122345789999
Q ss_pred CCCEEEEEEc-CCeEEEEeCCCceeeeeeccCC-ccEEEEEEecCCCeEEEEecCCeEEEecCCCc
Q 002502 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
+|.+++.|+. -..++||....|.+++.+.+.. .....+.|+|-...+++- ..|.+++|.....
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 9999988764 3469999999999999999887 567889999998877766 8899999854333
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=202.78 Aligned_cols=260 Identities=17% Similarity=0.281 Sum_probs=216.8
Q ss_pred CCeEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 36 SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..++.+||+++|....++++. ...-.++..- .+.+++++.. ...|.+|.+..........--+++|.+++-+|.|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 456999999999988888865 2222222222 2356666644 568999998765554433345788999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC---------CCCCceEEecC
Q 002502 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------SPDPNFTLDAH 184 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~ 184 (915)
|+.|+..|.|++|.+.+| .+..++..|-..|+++.|+. |+.+|++|+.||.|.+|++- +.++...+..|
T Consensus 96 l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 999989999999999999 77778899999999999998 99999999999999999872 34677888999
Q ss_pred CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce--
Q 002502 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-- 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 262 (915)
.-+|+.+...+.+....+++++.|.++++||+..|..+.++. ....+.+++.+|-...+++|+++|.|.+.++.+..
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 999999999998888899999999999999999999888876 56789999999999999999999999988765322
Q ss_pred --------------eeeeeccCCc--cEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 263 --------------LENTLNYGLE--RVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 263 --------------~~~~~~~~~~--~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
....+.+|.+ .|+|++.+-||..|++|+.||.+.+|.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 3445666766 899999999999999999999999983
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-24 Score=227.91 Aligned_cols=259 Identities=20% Similarity=0.407 Sum_probs=232.7
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+.++..+...-.++||+.+. +..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 33444555556677888543 445778888888877889999999999999999987777888999999999999
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC
Q 002502 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 186 (915)
|+++..+|+.|+.+|+|++||++.. +..+.+.+|...+.++.|+| -+.+++.|+.|+.+++||++...+...+.+|..
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999999999999999988 67778999999999999999 888999999999999999998889999999999
Q ss_pred CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeee
Q 002502 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.|.++.|+|+|. +++.|++|..+++||...|+.+..|..|...+.++.|+|..-++++||.|++|++||+.+...+..
T Consensus 156 vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 156 VVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeEEEeecCCCc--eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 999999999998 899999999999999999999999999999999999999988999999999999999999999988
Q ss_pred eccCCccEEEEEEecCCCeEEEEecCCeE
Q 002502 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 267 ~~~~~~~v~~i~~s~~~~~l~~g~~dg~v 295 (915)
.......|.+..|+|++..+.+|......
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cCCccCCceeeeecCCceeeecCchhhhh
Confidence 88888899999999999999888766544
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=199.73 Aligned_cols=286 Identities=14% Similarity=0.207 Sum_probs=218.1
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCc
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 132 (915)
..++|+++.|+|....+++++.||++++|.+.. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a- 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA- 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-
Confidence 356899999999999999999999999998753 345666666678999999999998 8999999999999999876
Q ss_pred eEEEE--eecCC-cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 133 MCTQI--FEGHS-HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 133 ~~~~~--~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
+..+. ..++. ..+.....+| ++++++..+..|.|.+....+++.+.+++ ..+.|..++|+.++. .|++.+.+|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~G 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTG 366 (514)
T ss_pred ccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCc
Confidence 33222 22332 3466778889 89999999999999999999988888776 577899999998886 688888899
Q ss_pred eEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCeEEEEeCCC------ceeeeeeccCCccEEEEEEecC
Q 002502 210 TAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRIWHATT------YRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~i~~s~~ 282 (915)
.|.+||++...+++.+....+ .-+++|.++++.++|+|+..|.|.|||..+ .+++..+..-...|+++.|+++
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999999999888863222 245778889999999999999999999553 4456666555678999999999
Q ss_pred CCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002502 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (915)
++.||.++....=.+.+ .++.+...--+.+ .....-..+++++||
T Consensus 447 ~qiLAiaS~~~knalrL-------------------------VHvPS~TVFsNfP----------~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRL-------------------------VHVPSCTVFSNFP----------TSNTKVGHVTCMAFS 491 (514)
T ss_pred hhhhhhhhhccccceEE-------------------------EeccceeeeccCC----------CCCCcccceEEEEec
Confidence 99999887643222211 1111110000000 012223467889999
Q ss_pred CCCCEEEEEc-CCcEEEEEe
Q 002502 363 PNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 363 ~~g~~lav~~-~~~~~i~~~ 381 (915)
|.|.++|++. .|++.+|.+
T Consensus 492 P~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCceEEeecCCCceeeEee
Confidence 9998999988 788888864
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=8.9e-22 Score=202.86 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=110.0
Q ss_pred hhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCceeE------EEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002502 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK------SFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (915)
-.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|.... .+.+.+-.|.|+.|+|...-|...+..|++
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v 152 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV 152 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence 34678999999999999 45689999999999999998542211 122345578999999988778777788999
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC
Q 002502 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
.|||+.+++.+..+.+|.+.|.++.|+.||..|++++.|..|+|||.+......+...+|
T Consensus 153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 999999999999999999999999999999999999999999999988653444444443
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=8.7e-23 Score=204.94 Aligned_cols=274 Identities=20% Similarity=0.361 Sum_probs=219.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC--ceEEEEee--cCCcceEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002502 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--WMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.|..-|..+.+|...+++++|+. |.|+|||+... +.....+. ....+|.++...| +++.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 47788889999999999999886 78999999753 12222222 2457899999999 9999999999999999999
Q ss_pred CCCCCceEEecCC--CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002502 173 GSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 173 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 250 (915)
....+........ .....++.+|+.+ +.++++.||.|.|||+++...++.|++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 8876654433333 3456677888877 88999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeec
Q 002502 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
++||.||+++++.+...... ..|.++.++|++.+|++|-.++.+.+-....+
T Consensus 573 ntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~skp--------------------------- 624 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--------------------------- 624 (705)
T ss_pred cceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEecCCc---------------------------
Confidence 99999999999887766554 78999999999999999999998877211111
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeec----ccccCccceeEEEEecCCcEEE
Q 002502 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALA----WRNRSFGSALEFVWSSDGEYAV 405 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~----~~~~~~~~~~~~~~s~dg~~l~ 405 (915)
++ ..+..++.-|-++.|.+.|++++..+ |+-+-.|...- +..+...+|+++.+|.|.+|++
T Consensus 625 ---------~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 625 ---------EK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred ---------cc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 00 01234455567899999999999887 88888886543 3456677899999999999999
Q ss_pred Eec-CCeEEEec
Q 002502 406 RES-SSKIKIFS 416 (915)
Q Consensus 406 ~~~-~~~v~v~~ 416 (915)
+++ +.+-.||.
T Consensus 691 TGSGdkkATVYe 702 (705)
T KOG0639|consen 691 TGSGDKKATVYE 702 (705)
T ss_pred ecCCCcceEEEE
Confidence 999 55677764
No 143
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.90 E-value=2.6e-20 Score=188.90 Aligned_cols=616 Identities=17% Similarity=0.197 Sum_probs=334.7
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEE-cC-------CCCEEEEEEcCCeEEEEE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-HP-------TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-s~-------~~~~l~~~~~dg~i~iwd 127 (915)
|...|.|+.|+.+...+.++ +|..+.+|+--+...........+.+....+ -+ ....++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 45566799999887755555 5555666654443433333322222221111 11 224688999999999987
Q ss_pred CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC
Q 002502 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
-.. ........|.+.+.+-.|+| ++.-|++++.||.|++|.- +|-...++.....+|.|++|.|+.+. .+.+ .
T Consensus 92 k~~--rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c--~ 164 (737)
T KOG1524|consen 92 KSA--RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS-IVFC--Q 164 (737)
T ss_pred ccc--hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc-eEEe--c
Confidence 543 46677788999999999999 9999999999999999984 55444555557789999999999875 3443 3
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEE
Q 002502 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~ 287 (915)
.+.+.|=.+.....+...+.|.+-|.++.|+|...++++|++|-..++||. -|+.+..-..|..+|++++|.|+ ..++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-ccee
Confidence 456777777777777788999999999999999999999999999999994 48888888888899999999999 6666
Q ss_pred EEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002502 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (915)
Q Consensus 288 ~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (915)
+++.+ +.++. ....+.+-.++||+||..
T Consensus 243 v~S~n-t~R~~---------------------------------------------------~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 243 LWSYN-TARFS---------------------------------------------------SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eeeee-eeeec---------------------------------------------------CCCccceEEEEEcCCCce
Confidence 66532 22220 111224458999999999
Q ss_pred EEEEc-CCcEEEEEeecccccCccceeEEEEecCCcE-EEEecCCeEEEeccC--------cceeeeeecCcccceeecC
Q 002502 368 VVVCG-DGEYIIYTALAWRNRSFGSALEFVWSSDGEY-AVRESSSKIKIFSKN--------FQEKRSVRPTFSAERIYGG 437 (915)
Q Consensus 368 lav~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~v~v~~~~--------~~~~~~~~~~~s~~~i~~g 437 (915)
+++++ .|.+++-.+-..+ .. .+.+ +.......|.+-|+. ++... ..|+- +-
T Consensus 271 ~a~gt~~G~v~~A~~ieq~-l~-----------~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv---~k~sL----~Y 331 (737)
T KOG1524|consen 271 ATCGTSTGQLIVAYAIEQQ-LV-----------SGNLKATSKSRKSITVRDVATGVQDILEFPQRV---VKFSL----GY 331 (737)
T ss_pred eeccccCceEEEeeeehhh-hh-----------hccceeEeeccceEEeehhhhhHHHHhhCccce---eeeee----ce
Confidence 99988 5554432211110 00 0111 111122334444422 22111 01222 24
Q ss_pred cEEEEeeCCeEEEEeccCCcEEEEEeccccEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCcccccccee
Q 002502 438 TLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFE 516 (915)
Q Consensus 438 ~~La~~~~~~i~~~d~~~~~~i~~~~~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 516 (915)
.+|++++...+++|.-.....-..+++.-..+..-..+ +++.+.....+.++.|..-.......+|. ...
T Consensus 332 ~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~---------~~d 402 (737)
T KOG1524|consen 332 GHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGS---------QID 402 (737)
T ss_pred eEEEEEeccEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCc---------ccc
Confidence 47777777788888754433222333211111111111 11222222222222221111000000000 011
Q ss_pred EeEeeeeeEEeeEEecCEEEEEcc-CCe-EEEEEC-------CEEeEEEeccc----ceEEEEEEeeCCEEEEEecCCce
Q 002502 517 LLHETNERVRTGLWVGDCFIYNNS-SWR-LNYCVG-------GEVTTMFHLDR----PMYLLGYLASQSRVYLIDKEFNV 583 (915)
Q Consensus 517 ~~~~~~~~i~~~~w~~~~~i~~~~-~~~-l~~~~~-------~~~~~~~~~~~----~~~~~~~~~~~~~l~~~d~~~~~ 583 (915)
.+.. + +.....|.+..... .++ +++|-. ++...+.+-+. .....| .+++..+.|+|+.+.+
T Consensus 403 lL~~---r--tlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG-~tnDrkVAFiDknrdl 476 (737)
T KOG1524|consen 403 LLTW---R--TLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKG-LTNDRKVAFIDKNRDL 476 (737)
T ss_pred cccc---e--eeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccC-CCccceEEEEecCCcE
Confidence 1111 1 11111222333222 222 222211 11111111111 011122 2567889999999888
Q ss_pred EEEEe-----cchHHHHHHHHHccCHHHHhhhcCCCCcchH------HHH---HHHHHhCCChhhhhhcccCccce-e--
Q 002502 584 MGYTL-----LLSLIEYKTLVMRGDLERANEILPSIPKEHH------NSV---ARFLESRGMIEEAIEVATDPDYR-F-- 646 (915)
Q Consensus 584 ~~~~l-----~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~------~~~---~~~~~~~~~~~~al~~~~~~~~~-f-- 646 (915)
+.-.. ...++...+.+..-.+.+--.+|=.+....+ +.+ ...+.+.-.-..+-++.+.|... |
T Consensus 477 ~ItsvKrfgkee~I~KiGTmVhtLawndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsFvg 556 (737)
T KOG1524|consen 477 FITSVKRFGKEEEIYKIGTMVHTLAWNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSFVG 556 (737)
T ss_pred EEEeehhcCchhhhhhhhhhhhhhhhccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeeeec
Confidence 76554 2233333443322222221111000000000 000 00111111111111222222111 1
Q ss_pred -----------eeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhh---HHHHHHHcCCcchhHHHHHhcCCHHH
Q 002502 647 -----------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEM---AEGCMKQAMDLSGLLLLYSSLGDAEG 712 (915)
Q Consensus 647 -----------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~---A~~~y~~~~d~~~l~~l~~~~g~~~~ 712 (915)
-+.+....+ ..+.-+.....+|.+--+.|-.-++=.+ -..+-.+-++..-..-.|...++.++
T Consensus 557 NqvtirrsdG~LlpisV~py---~~iL~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idK 633 (737)
T KOG1524|consen 557 NQVTIRRSDGALLPISVNPY---PEILHEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDK 633 (737)
T ss_pred cEEEEEeccCceEeeecccc---HHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhh
Confidence 111222222 2234444556778776666655444322 11111222344444556788888888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002502 713 ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (915)
Q Consensus 713 ~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~ 779 (915)
|..+..+.....+-...++..+.+|+.-+|.-++++++-...|+.+.-.+. .|+.+|.
T Consensus 634 Vsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~---------nW~RALE 691 (737)
T KOG1524|consen 634 VSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMH---------NWRRALE 691 (737)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhh---------hHHHHHH
Confidence 888888887777777777777888999999999999999999987776543 3777765
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.9e-20 Score=199.66 Aligned_cols=265 Identities=14% Similarity=0.146 Sum_probs=202.0
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++++.+|.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888899999999999998888876544 6789999999977 5667789999999999888877765544 56789
Q ss_pred EcCCCCEEEEE-EcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCceEEecC
Q 002502 107 VHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAH 184 (915)
Q Consensus 107 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 184 (915)
|+|+++.++++ +.++.|++||+.+. .....+.. ...+.+++|+| ++..+++++.++ .+.+||..+++...... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 99999987655 56899999999986 44444432 23467899999 888998888765 46778988776554443 2
Q ss_pred CCCeeEEEEEeCCCcCEEE-EEECCCeEEEEECCCCcEEEEecCCc-------cCeEEEEEeCCCCEEEEE-EcCCeEEE
Q 002502 185 QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLEGHT-------HNVSAVCFHPELPIIITG-SEDGTVRI 255 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~v~~~~~~~~l~~~-~~dg~v~i 255 (915)
...+.+++|++++. +++ ++..++.|++||+.+++.+..+..+. .....++|+|++++++++ +.++.|.+
T Consensus 156 ~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 34457889999887 454 44568999999999988776654221 123468899999976543 45678999
Q ss_pred EeCCCceeeeeeccCCccEEEEEEecCCCeEEEE-ecCCeEEEecCC
Q 002502 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIGR 301 (915)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g-~~dg~v~i~~~~ 301 (915)
||+.+++....+.. ...+++++|+|+|++|+++ ..+|.|.+|...
T Consensus 234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 99998887765543 3578999999999999886 468999987433
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.2e-24 Score=221.92 Aligned_cols=238 Identities=24% Similarity=0.420 Sum_probs=220.8
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+.+..|+..|.|+..-..++.+++|+.+..+-+|.+..-..+..+.+|.++|.++.|++...+|++|+.+|+|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 56667999999999877888999999999999999888777788999999999999999999999999999999999999
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
.+.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++.. -+...+.+|...+.++.|+| ++.+++.++.|.+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCcceee
Confidence 9999999999999999999999999999999999999999955 58888999999999999999 999999999999999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002502 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 248 (915)
+||+..++....|..|.+.+..+.|+|..- ++..|+.|+++++||+++.+.+.........|.+..|+|++..+++|.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eecccccccccccccccccccccccCchhh--hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 999999999999999999999999988765 788999999999999999888888888888999999999999888886
Q ss_pred cC
Q 002502 249 ED 250 (915)
Q Consensus 249 ~d 250 (915)
..
T Consensus 258 q~ 259 (825)
T KOG0267|consen 258 QI 259 (825)
T ss_pred hh
Confidence 55
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.1e-23 Score=218.58 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=203.9
Q ss_pred EEEEEEcC-CCCEEEEEEcCCeEEEEECCC---CceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcee
Q 002502 18 VKSVDLHP-SEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 18 v~~~~~sp-~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
+..+.|+. +.++||+++.+|.|.+||+.. .+++..|..|...++++.|++. ..+|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 45577875 567999999999999999987 5566678889999999999985 467889999999999999999888
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 93 KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
.++.+....|+.+.|+|. +.+++++.+.|.+.+||++....+...+..|.++|.|+.|+| +..+||+|+.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 899888999999999994 567899999999999999988788888999999999999999 999999999999999999
Q ss_pred CCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEE--CCCeEEEEECCCC-cEEEEecCCccCeEEEEEeC-CCCEEEE
Q 002502 172 LGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHP-ELPIIIT 246 (915)
Q Consensus 172 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~v~~v~~~~-~~~~l~~ 246 (915)
..+++...... ....+|.++.|-|.... .|++++ .|-.|+|||++.. -+..++..|...++.++|.. +...+.+
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 98665433222 24578999999998764 566665 4788999999753 35678888999999999976 4457889
Q ss_pred EEcCCeEEEEeCCCce
Q 002502 247 GSEDGTVRIWHATTYR 262 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~~ 262 (915)
++.||.|....+++..
T Consensus 328 ~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNAT 343 (839)
T ss_pred ecCccHHHHhhhhccc
Confidence 9999988766555443
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=214.18 Aligned_cols=277 Identities=21% Similarity=0.356 Sum_probs=219.1
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----eeEEEEec---CCCEEEEEEeC-CCCEEEEEeCCCeEEEEECC
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVT---ELPVRSAKFVA-RKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~---~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~ 87 (915)
....+|+..++-..+++++. ..+.||.+.... +...+... .-.+..++|.. +.++||+++..|.|.+||++
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45677888898888888874 467888765432 11111111 12355678874 46889999999999999998
Q ss_pred C---CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 88 T---MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 88 ~---~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
. .+.+..|..|...+++++|++..+ +|++||.||+|++||++.. ....++.+....|..+.|+|..++.|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecC
Confidence 6 455667889999999999999765 6789999999999999987 5566677788889999999999999999999
Q ss_pred CCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc--EEEEecCCccCeEEEEEeCC
Q 002502 164 DRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPE 240 (915)
Q Consensus 164 dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~ 240 (915)
.|.+.+||++... +...+..|.++|.|+.|+|++. +|++|+.|+.|+|||+.+++ .+.++. ...+|.++.|-|.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 9999999998764 4567789999999999999665 99999999999999997654 344443 4568999999998
Q ss_pred CCE-EEEEE--cCCeEEEEeCCC-ceeeeeeccCCccEEEEEEec-CCCeEEEEecCCeEEE
Q 002502 241 LPI-IITGS--EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMV 297 (915)
Q Consensus 241 ~~~-l~~~~--~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~s~-~~~~l~~g~~dg~v~i 297 (915)
.++ |++++ .|-.|++||++. +-+..++..|...++.++|.. |...+.+++.||++.-
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 764 55544 467899999874 346678888989999999976 3456777888888765
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.3e-21 Score=181.63 Aligned_cols=235 Identities=16% Similarity=0.285 Sum_probs=183.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee
Q 002502 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+. +.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 6899999999999999999999999999999888999999999999999999999999999999999999984 555444
Q ss_pred cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC----eeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG----VNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
..++|+.+.|+|.+.+.+++.-.+..-.+-++..++....-....+. -.+..|.+.|+ |+++|...|.+.++|
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEe
Confidence 56789999999988888887777776666666543221111111111 12234655565 999999999999999
Q ss_pred CCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc-------eee--eeecc--CCccEEEEEEecCC
Q 002502 216 YQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTY-------RLE--NTLNY--GLERVWAIGYMKSS 283 (915)
Q Consensus 216 ~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~--~~~~~--~~~~v~~i~~s~~~ 283 (915)
..+.+++..++... ..|..+.++..|+.++..+.|..||.|++..- .+. +.++. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999998888666 78999999999999999999999999997621 111 12211 11234578999999
Q ss_pred CeEEEEecC-CeEEEe
Q 002502 284 RRIVIGYDE-GTIMVK 298 (915)
Q Consensus 284 ~~l~~g~~d-g~v~i~ 298 (915)
.+++.|+.. ..++||
T Consensus 262 eYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIW 277 (405)
T ss_pred cEEEeccccceeEEEE
Confidence 999887743 345555
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.3e-21 Score=179.69 Aligned_cols=252 Identities=15% Similarity=0.245 Sum_probs=197.3
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----ceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMF 80 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~ 80 (915)
+...-.+|.+-|.++.|.+.|+.+|+++.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34445689999999999999999999999999999996543 34556778999999999976 4899999999999
Q ss_pred EEEEECCC---------CceeEEEecCCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCC-----ceEEEEee-----
Q 002502 81 IRVYNYNT---------MDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG-----WMCTQIFE----- 139 (915)
Q Consensus 81 i~vwd~~~---------~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~----- 139 (915)
+.||.-.. .....++....+.|+.+.|.|. |-.|++++.||.++||+.... +.+...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 99997521 1224455666788999999995 567999999999999986542 22222222
Q ss_pred --cCCcceEEEEEecC--CCCEEEEEECC-----CcEEEEECCCCC----CceEEecCCCCeeEEEEEeCCCcC--EEEE
Q 002502 140 --GHSHYVMQVTFNPK--DTNTFASASLD-----RTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKP--YLIT 204 (915)
Q Consensus 140 --~~~~~i~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~--~l~~ 204 (915)
.+..+..|+.|+|. ...+|++|+.+ +.+.||....+. .+.++.+|..+|+.++|.|+-... +|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 45667889999982 24578888765 478888765443 344567899999999999975433 5888
Q ss_pred EECCCeEEEEECCCC--------------------cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 205 GSDDHTAKVWDYQTK--------------------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 205 ~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
++.|| |+||.+... +.+..+..|.+.|..+.|+-.|..|.+.|.||+||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 999998631 2345577899999999999999999999999999999853
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.3e-20 Score=197.72 Aligned_cols=264 Identities=11% Similarity=0.126 Sum_probs=198.2
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Q 002502 9 RKLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~ 86 (915)
..+..| ..+.+++|+|+++.++ +++.++.|++||..+++....+..+.. +..+.|+|+++.++++ +.++.|++||+
T Consensus 25 ~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 344444 3478899999999774 566789999999999888777765443 5678999999987665 45899999999
Q ss_pred CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE-EECC
Q 002502 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLD 164 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~d 164 (915)
.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..++. ...... ....+.++.|+| ++..+++ +..+
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~ 178 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTA-DGKELWVSSEIG 178 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECC-CCCEEEEEcCCC
Confidence 98887777753 33468899999999999888765 56778988773 333222 223457789999 7777754 4468
Q ss_pred CcEEEEECCCCCCceEEecCC-----C--CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002502 165 RTIKIWNLGSPDPNFTLDAHQ-----K--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 165 g~i~i~d~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 237 (915)
+.|.+||+.+++....+..+. . ....++|+|+++. .+++.+.++.+.+||.++++.+..+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 999999999887665554221 1 2346788888873 23444556789999999888776554 4457899999
Q ss_pred eCCCCEEEEE-EcCCeEEEEeCCCceeeeeeccCCccEEEEEEec
Q 002502 238 HPELPIIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 238 ~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~ 281 (915)
+|+|++|+++ +.+|.|++||+.+++.+..+..+ ...+.++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 9999999876 46899999999999998888766 5558888765
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=204.59 Aligned_cols=265 Identities=17% Similarity=0.276 Sum_probs=211.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002502 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
.|....+.++|.|+|.+|++++.||.|++|+.........++..+...|++++.. .+.|++|+.+++|.+|...+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCCC
Confidence 6888899999999999999999999999998766522222333367778888764 5699999999999999999988
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 002502 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iw 256 (915)
.-..+....-++++++++.+|. +++.|++|-.|++.++.+......+++|..+|.++.|+|++.+||+.+.||.|++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 7767777788899999998877 89999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeeeeccC--------CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEee
Q 002502 257 HATTYRLENTLNYG--------LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIK 328 (915)
Q Consensus 257 d~~~~~~~~~~~~~--------~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~ 328 (915)
++.++.+..++..- ...+..++|+|+|..+++.+.++.|.++.... |. ..+.+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-------------we-----~~f~L- 226 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-------------WE-----LQFKL- 226 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC-------------ce-----eheee-
Confidence 99998876655432 23467799999988888888888888742111 00 01110
Q ss_pred ecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-ccCccceeEEEEecCCcEE
Q 002502 329 SVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-NRSFGSALEFVWSSDGEYA 404 (915)
Q Consensus 329 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-~~~~~~~~~~~~s~dg~~l 404 (915)
.+ ......+..+.|+|+|+|||.++ +|++.||+..... ......|.+++|-|++.-+
T Consensus 227 ------------------r~-~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 227 ------------------RD-KLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ------------------cc-cccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCee
Confidence 00 11122267899999999999998 9999999987643 3344578899999887543
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=195.01 Aligned_cols=245 Identities=18% Similarity=0.290 Sum_probs=193.5
Q ss_pred EEEEEEcC-------CCCEEEEEEcCCeEEEEECCCCce---------------------eEEEEecCCCEEEEEEeCC-
Q 002502 18 VKSVDLHP-------SEPWILASLYSGTVCIWNYQSQTM---------------------AKSFEVTELPVRSAKFVAR- 68 (915)
Q Consensus 18 v~~~~~sp-------~~~~la~~~~dg~v~iwd~~~~~~---------------------~~~~~~~~~~v~~~~~s~~- 68 (915)
..|++|.. .|+++|+|+.+..|.|||+.-... -..-.+|...|.++.|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 45667754 367999999999999999752110 0112357778889999875
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEE
Q 002502 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (915)
.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|.+........+ ...+.|-.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEk 334 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEK 334 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEE
Confidence 4678899999999999999999999999999999999999965 578899999999999998431222222 23467899
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE--EEE
Q 002502 148 VTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQT 224 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~ 224 (915)
+.|+|...+.+++++.||+|+-+|+++. ++++++..|..+|.++++++...+ ++++++.++.|++|++....+ +..
T Consensus 335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~ 413 (463)
T KOG0270|consen 335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKE 413 (463)
T ss_pred EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCCccccc
Confidence 9999988899999999999999999986 899999999999999999887655 899999999999999875333 222
Q ss_pred ecCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCCCceee
Q 002502 225 LEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 225 ~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
-.-.-+...|.++.|+-. .++.|+..+.+++||+.+...+
T Consensus 414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 221233466778888765 5677888889999998877644
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.3e-21 Score=190.39 Aligned_cols=275 Identities=19% Similarity=0.280 Sum_probs=208.6
Q ss_pred EEEEcCCCCEEEEEEcC---Ce--EEEEECCCCceeEEEEec----CCCEEEEEEeC-------CCCEEEEEeCCCeEEE
Q 002502 20 SVDLHPSEPWILASLYS---GT--VCIWNYQSQTMAKSFEVT----ELPVRSAKFVA-------RKQWVVAGADDMFIRV 83 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~d---g~--v~iwd~~~~~~~~~~~~~----~~~v~~~~~s~-------~~~~l~~g~~dg~i~v 83 (915)
.+..-|+.++++++-.. .. |+||+ .... ..+-.| .....|++|.. .|+++|+|+.+..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn--~~e~-nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYN--EEEE-NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEc--CCCc-ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45566777878777542 23 45555 3221 112222 23346777753 3689999999999999
Q ss_pred EECCCCce---------------------eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecC
Q 002502 84 YNYNTMDK---------------------VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (915)
Q Consensus 84 wd~~~~~~---------------------~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (915)
||+.-... -....+|++.|..+.|+..- +.|++||.|.+|++||+.++ .+..++..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhhc
Confidence 99852111 01123688888899998754 57889999999999999999 888888999
Q ss_pred CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-Cc
Q 002502 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KS 220 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 220 (915)
...|.++.|+|..+..|++|+.|++|.+.|.+........-...+.|-.+.|.|.... .++++..||+|+-+|+|. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCC
Confidence 9999999999999999999999999999999854333222235678899999998765 788889999999999997 48
Q ss_pred EEEEecCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCCCce--eeeeeccCCccEEEEEEecCC-CeEEEEecCCeEE
Q 002502 221 CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIM 296 (915)
Q Consensus 221 ~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~s~~~-~~l~~g~~dg~v~ 296 (915)
++.+++.|.++|+++++++.-+ ++++++.|+.|++|++..-+ .+.......++..|.++.|+- -.+++|+..+.++
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 9999999999999999998665 68889999999999976433 333333344667888888875 4577788888888
Q ss_pred Eec
Q 002502 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
+|.
T Consensus 445 vwd 447 (463)
T KOG0270|consen 445 VWD 447 (463)
T ss_pred Eee
Confidence 874
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=188.31 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=191.8
Q ss_pred ECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcCCC-CEEE
Q 002502 43 NYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTL-PYVL 115 (915)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~-~~l~ 115 (915)
|+.+.........+..+|++++|+|.. +.+++|...|+|-+||+.+. ..+..+..|+.+|.+|.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333444555667789999999999965 57888999999999999532 2356678899999999999965 5789
Q ss_pred EEEcCCeEEEEECCCCceEEEEeec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEE
Q 002502 116 SSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVD 192 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~ 192 (915)
+.|.||+|++-|+++. .....+.. ....+.++.|+. +...++++..=|...+||++++.. ...+..|...|++++
T Consensus 252 ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeccCceeeeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999999876 22222222 445567788887 555666666667999999998765 556677888999999
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCc----EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC----Cceee
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLE 264 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~ 264 (915)
++|-... ++++++.|++.+|||++.-. ++...-.|...|.+..|||.+..|++.+.|..|+|||.. ...+.
T Consensus 330 ~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 330 LNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred cCCCCch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 9998765 89999999999999998622 233344589999999999998889999999999999973 22333
Q ss_pred eeeccCCc-----cEEEEEEecCCCeEEEEecCCeEEE
Q 002502 265 NTLNYGLE-----RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 265 ~~~~~~~~-----~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
.++..... ......|.|+..++++|-.-..|-|
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 33332211 2345789999999998887766666
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.4e-20 Score=175.89 Aligned_cols=245 Identities=18% Similarity=0.331 Sum_probs=194.5
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----ceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEE
Q 002502 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 54 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd 127 (915)
.+|..-|.++.|.+-|+++|+|+.|++|.|||.+.. .+....+.|.+.|..+.|-+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357888999999999999999999999999996533 34556779999999999976 488999999999999996
Q ss_pred CC--------CCceEEEEeecCCcceEEEEEecC-CCCEEEEEECCCcEEEEECCCCCCc------eEE-------ecCC
Q 002502 128 WE--------KGWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN------FTL-------DAHQ 185 (915)
Q Consensus 128 ~~--------~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~------~~~-------~~~~ 185 (915)
=. ..+....++......|+.+.|.|. -+-.+++++.||.++||+.-..-.. ..+ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 41 124555667777889999999993 3567999999999999987543221 111 1355
Q ss_pred CCeeEEEEEeCC-CcCEEEEEECC-----CeEEEEECCCCc----EEEEecCCccCeEEEEEeCCC----CEEEEEEcCC
Q 002502 186 KGVNCVDYFTGG-DKPYLITGSDD-----HTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDG 251 (915)
Q Consensus 186 ~~v~~~~~~~~~-~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg 251 (915)
.+..|+.|+|.. ..++|++|+.+ +.++||....+. .+.++.+|..+|+.++|.|+- .+|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899999764 23467777766 578898765432 456677899999999999964 4899999999
Q ss_pred eEEEEeCCCc--------------------eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 252 TVRIWHATTY--------------------RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 252 ~v~iwd~~~~--------------------~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
|+||++... +.+..+..|.+.||.+.|+-.|..|++.++||.|++|.
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 999997731 23456778889999999999999999999999999984
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=9.6e-21 Score=184.35 Aligned_cols=245 Identities=20% Similarity=0.291 Sum_probs=190.6
Q ss_pred hhcccCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEECCC----------------CceeEEEEecCCCEEEEEEeCCC-
Q 002502 9 RKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQS----------------QTMAKSFEVTELPVRSAKFVARK- 69 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~--~la~~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~~- 69 (915)
....+|.+.+..+.-++-++ +.|+-+..|.|+|||+.. .+.+.++.+|...=..+.|||-.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34457888888888887654 555556799999999743 24667788899889999999932
Q ss_pred CEEEEEeCCCeEEEEECCCCcee---EEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCc-eEEEEeecCCcc
Q 002502 70 QWVVAGADDMFIRVYNYNTMDKV---KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHY 144 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~ 144 (915)
..|++|..-+.|++|...++... ..|.+|+..|..++|||.. ..|++||.||+|+|||++.+. ......+.|.+.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 34888888899999999887653 3356799999999999965 578899999999999999872 233344789999
Q ss_pred eEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc-
Q 002502 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 220 (915)
|..+.|+. ...+|++|+.||+++|||+++ ++++..++.|..+|+++.|+|.... .|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 305 VNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEeeccCC
Confidence 99999998 556999999999999999975 5677899999999999999998765 78899999999999985311
Q ss_pred ---------------EEEEecCC--ccCeEEEEEeCCCC-EEEEEEcCCeEEEE
Q 002502 221 ---------------CVQTLEGH--THNVSAVCFHPELP-IIITGSEDGTVRIW 256 (915)
Q Consensus 221 ---------------~~~~~~~~--~~~v~~v~~~~~~~-~l~~~~~dg~v~iw 256 (915)
+.+.+-.| ...+..+.|+++-+ +|++.+.|| +.||
T Consensus 383 ~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 383 EEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 11111123 34577889998765 677777787 4444
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6.1e-21 Score=185.70 Aligned_cols=241 Identities=20% Similarity=0.320 Sum_probs=183.6
Q ss_pred ecCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC----------------CceeEEEecCCCCEEEEEEcCCC-CEEE
Q 002502 55 VTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT----------------MDKVKVFEAHTDYIRCVAVHPTL-PYVL 115 (915)
Q Consensus 55 ~~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~~-~~l~ 115 (915)
.|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+.+.++.+|.+.=..++|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 355666666666654 4455557799999999742 34577888999888999999932 2488
Q ss_pred EEEcCCeEEEEECCCCceE--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCeeEE
Q 002502 116 SSSDDMLIKLWDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCV 191 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~ 191 (915)
+|.--+.|++|...++.-. ...+.+|+..|-.++|+|...+.|++|+.||+|+|||++++. .....+.|...|+.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 8888889999998876222 234667999999999999888999999999999999999873 233447899999999
Q ss_pred EEEeCCCcCEEEEEECCCeEEEEECCC---CcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCcee----
Q 002502 192 DYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL---- 263 (915)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~---- 263 (915)
+|+.... +|++|++||+++|||+++ ++++..++-|..+|+++.|+|.. ..|+++|.|.+|.|||+..-.-
T Consensus 309 SWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 309 SWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9986655 899999999999999985 67899999999999999999954 5788889999999999863211
Q ss_pred --------------eeeeccCCccEEEEEEecCCC-eEEEEecCCeEEE
Q 002502 264 --------------ENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMV 297 (915)
Q Consensus 264 --------------~~~~~~~~~~v~~i~~s~~~~-~l~~g~~dg~v~i 297 (915)
+..+......+..+.|+++-. ++++.+.+|.-.+
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 011111224566788888743 5555666665544
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=178.57 Aligned_cols=272 Identities=19% Similarity=0.283 Sum_probs=214.4
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCC------------ceeEEEEe-cCCCEEEEEEe-------CCCCEEEEEeC
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQ------------TMAKSFEV-TELPVRSAKFV-------ARKQWVVAGAD 77 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~------------~~~~~~~~-~~~~v~~~~~s-------~~~~~l~~g~~ 77 (915)
.+.+.|||||..|++-+.|..+++|++... +...++.. ....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999997531 11112222 34467777776 56788999999
Q ss_pred CCeEEEEECCCCceeEEEec--CCC---CEEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCceEEE--E----eecCCcce
Q 002502 78 DMFIRVYNYNTMDKVKVFEA--HTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDW-EKGWMCTQ--I----FEGHSHYV 145 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~--~~~---~i~~l~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~--~----~~~~~~~i 145 (915)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|+.|. ...|+++|+ +.++.+.. + ..+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998777653 333 346899999999988775 468999999 45532221 1 12346778
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC-CCeEEEEECCC-CcEEE
Q 002502 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT-KSCVQ 223 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~ 223 (915)
.+++|+|.+...+++|+...++-||.-....+...+-+|.++|+.++|.++|+ .|.+|.. +..|..||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn--~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN--KLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC--eecccccCCCeEEEEeehhccchhh
Confidence 99999998888999999999999999889999999999999999999999998 4777664 78899999986 45666
Q ss_pred EecCCcc-CeE--EEEEeCCCCEEEEEEcCCeEEEEeCCC-ceeeeeeccCCccEEEEEEecCCCeEEEEecC
Q 002502 224 TLEGHTH-NVS--AVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 224 ~~~~~~~-~v~--~v~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~d 292 (915)
.+..|.. .-. -....|.+++|++|+.||.|++||+.+ +..+..+..+...+..++++|--.++++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 6766654 222 345578999999999999999999998 66677888888899999999998777776643
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=7.2e-21 Score=191.09 Aligned_cols=262 Identities=13% Similarity=0.188 Sum_probs=210.8
Q ss_pred CEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002502 17 RVKSVDLHPSEPWILASL--YSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
.+.++.|+.... |++++ .|..|++|. +.|+ ....-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 389999998775 55444 477899997 4443 2111111222344555555668999999999999999997666
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.+.++.|.+.|+++.++....+|++++..|.|.|..+.++ .....+.. ....|.-+.|+|....+|.+++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 7778999999999999999999999999999999999988 33344443 345566899999777788899999999999
Q ss_pred ECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002502 171 NLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 249 (915)
|..+..++..+ ..|..+...++|+|.... +|++.+.|..|.+||.+.......+. ...+.+.++|.++|.+|++|..
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 99888877655 578899999999998765 88999999999999998766655554 5678999999999999999999
Q ss_pred CCeEEEEeCCCc-eeeeeeccCCccEEEEEEecCC
Q 002502 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~s~~~ 283 (915)
.|.|..||++.. .++.++..|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999854 4788888898999999998875
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.6e-20 Score=191.56 Aligned_cols=243 Identities=20% Similarity=0.266 Sum_probs=198.0
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC--EEEEEEcCCeEEEEE
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWD 127 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~--~l~~~~~dg~i~iwd 127 (915)
-..+.+|.+.|+|+...|.|.+|++|+.||+|+||.+.||.++.++.. .+.|.|++|+|.+. .|+++-.. .+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 345778999999999999999999999999999999999999998874 56899999999765 34443332 233333
Q ss_pred ---------------------------------CCC---CceEEEEeecCCcceEEEEEecCCCCEEEEEECC---CcEE
Q 002502 128 ---------------------------------WEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD---RTIK 168 (915)
Q Consensus 128 ---------------------------------~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d---g~i~ 168 (915)
-.. ...-+.+...|...|.++.|+. .|.+|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence 210 1111234456888999999998 89999987654 5689
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002502 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 248 (915)
|.++........+....+.|.++.|+|... +|++++. ..|+|||+.....+..+......|.+++.+|.|.-|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p--~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKP--YLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCc--eEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999987776666766788899999999766 6776664 5899999988777777777778899999999999999999
Q ss_pred cCCeEEEEeCCCc-eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 249 EDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 249 ~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
.|+.+..+|+.-. ++.+++..|...+++++|++.-.++++|++||.++++
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999998754 4778888999999999999999999999999999984
No 161
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.7e-18 Score=184.16 Aligned_cols=407 Identities=16% Similarity=0.225 Sum_probs=270.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC---EEEEEeCCCeEEEEECC
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYN 87 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~g~~dg~i~vwd~~ 87 (915)
+.|....-..-.||+|+++++... +..|.||...++.++..+..|..++..+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444444567899999887766 66899999999999999999999999999988654 67789999999999998
Q ss_pred CCceeEEEecCCCC----------------------------------------------------------EEEEEEcC
Q 002502 88 TMDKVKVFEAHTDY----------------------------------------------------------IRCVAVHP 109 (915)
Q Consensus 88 ~~~~~~~~~~~~~~----------------------------------------------------------i~~l~~s~ 109 (915)
.+..++++..+... -.++.+++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 87776665432110 11223333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEE---EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC----CCCceEEe
Q 002502 110 TLPYVLSSSDDMLIKLWDWEKGWMCTQ---IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----PDPNFTLD 182 (915)
Q Consensus 110 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~ 182 (915)
.|.+..... +..+.+|.......... .-..|...+++.+++| .++++++|..||.|.+|.--. ......+.
T Consensus 171 ~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 171 SGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 333333322 23466666665321110 1123556689999999 999999999999999996433 22456678
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce
Q 002502 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
.|...|++++|+++|. +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|+.|.+....+..
T Consensus 249 WH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ecccccceeEEecCCc--eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 8999999999999998 89999999999999999988 44455578899999999999999999999999999876655
Q ss_pred eeeeeccC-----------CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecc
Q 002502 263 LENTLNYG-----------LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (915)
Q Consensus 263 ~~~~~~~~-----------~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~ 331 (915)
...++.+. .+-.+.++++|..+.++..+..|.|.++..-.. ..+..+.+.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td----------------~~i~~~~v~--- 386 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD----------------STIYKLQVC--- 386 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc----------------ceeeeEEEE---
Confidence 44333322 233567888998888888899999988521111 111111110
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---------CC--cEEEEEeec----cc------ccCcc
Q 002502 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---------DG--EYIIYTALA----WR------NRSFG 390 (915)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---------~~--~~~i~~~~~----~~------~~~~~ 390 (915)
..+..+|.. .....++.++.+..|.++++.. +| .+.+|.... |. ..+..
T Consensus 387 -~~n~~~~~~---------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 387 -DENYSDGDV---------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred -eecccCCcc---------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 011223331 2233456677777788877653 22 234452221 11 11222
Q ss_pred ceeEEEEe-c-CCcEEEEec-CCeEEEeccCcc-------------------eeeeeecCcccceeecCcEEEEeeCCeE
Q 002502 391 SALEFVWS-S-DGEYAVRES-SSKIKIFSKNFQ-------------------EKRSVRPTFSAERIYGGTLLAMCSNDFI 448 (915)
Q Consensus 391 ~~~~~~~s-~-dg~~l~~~~-~~~v~v~~~~~~-------------------~~~~~~~~~s~~~i~~g~~La~~~~~~i 448 (915)
.+...++. + ....+++.+ +|.++||..+.. ......++|+.| |.+|+++.+++|
T Consensus 457 ~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~s~~~~I 532 (792)
T KOG1963|consen 457 AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAVSFDDTI 532 (792)
T ss_pred eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC----CcEEEEecCCEE
Confidence 22233333 2 232566664 899999975211 001111267777 899999999999
Q ss_pred EEEeccCC
Q 002502 449 CFYDWAEC 456 (915)
Q Consensus 449 ~~~d~~~~ 456 (915)
.+||..+.
T Consensus 533 tiwd~~~~ 540 (792)
T KOG1963|consen 533 TIWDYDTK 540 (792)
T ss_pred EEecCCCh
Confidence 99999884
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.2e-20 Score=177.68 Aligned_cols=282 Identities=21% Similarity=0.399 Sum_probs=217.6
Q ss_pred hcccCCCCEEEEEEcC----CCC-EEEEEEcCCeEEEEECCCCceeEEEE-----ecCCCEEEEEEeCC----CCEEEEE
Q 002502 10 KLAQRSERVKSVDLHP----SEP-WILASLYSGTVCIWNYQSQTMAKSFE-----VTELPVRSAKFVAR----KQWVVAG 75 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp----~~~-~la~~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~l~~g 75 (915)
....|..+|..++|++ +.+ .+|+.+ .+.+.||......-++.++ .|+.....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999986 333 445554 5689999987654333332 25667888899865 4578999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEee---cCCcceEEEEEe
Q 002502 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFN 151 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~ 151 (915)
+.-|.|+|.|+.+++....+.+|...|+.+.++|+. ++++++|.|.+|++|++++. .+..++. +|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEc
Confidence 999999999999999999999999999999999976 57889999999999999998 7777764 699999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC---------------------------ce-EEecCCCCeeEEEEEeCCCcCEEE
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSPDP---------------------------NF-TLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------~~-~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
+ ++..+++++.|.+|++|++...+. .+ +..-|...|.|+.|.- + +++
T Consensus 191 ~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d--~il 265 (385)
T KOG1034|consen 191 L-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D--FIL 265 (385)
T ss_pred C-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h--hee
Confidence 9 888999999999999999973210 00 1234666777777753 3 799
Q ss_pred EEECCCeEEEEEC-CCCc-------------EEEEecCCccCeEEEE--EeCCCCEEEEEEcCCeEEEEeCCCceee--e
Q 002502 204 TGSDDHTAKVWDY-QTKS-------------CVQTLEGHTHNVSAVC--FHPELPIIITGSEDGTVRIWHATTYRLE--N 265 (915)
Q Consensus 204 ~~~~dg~i~iwd~-~~~~-------------~~~~~~~~~~~v~~v~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~ 265 (915)
+-+.++.|..|.. +-++ .+..+.-....|+-+. |.|-++.|+.|...|.|.+||+.+..+. .
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9999999999987 2111 1233333444555554 5667889999999999999999876652 1
Q ss_pred ee--ccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 266 TL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 266 ~~--~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
++ ......|...+|+.||..|+..++|++|.-|
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 22 2234679999999999999999999998776
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7.3e-22 Score=219.08 Aligned_cols=280 Identities=17% Similarity=0.284 Sum_probs=221.3
Q ss_pred CEEEEEEcCCCC-EEEEEE----------cCCeEEEEECCC--Cc----eeEEEEecCCCEEEEEEeCCCCE----EEEE
Q 002502 17 RVKSVDLHPSEP-WILASL----------YSGTVCIWNYQS--QT----MAKSFEVTELPVRSAKFVARKQW----VVAG 75 (915)
Q Consensus 17 ~v~~~~~sp~~~-~la~~~----------~dg~v~iwd~~~--~~----~~~~~~~~~~~v~~~~~s~~~~~----l~~g 75 (915)
+--.++|||+++ ++|+|. .+.++.||.+.- .. .+..+. .....+.++|.+.|.. |+.|
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc
Confidence 345689999997 666653 244566665432 22 222222 3456789999998876 8888
Q ss_pred eCCCeEEEEECCCC------ceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEE-eecCCcceEE
Q 002502 76 ADDMFIRVYNYNTM------DKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQ 147 (915)
Q Consensus 76 ~~dg~i~vwd~~~~------~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~ 147 (915)
..||.|.+||...- ..+.+...|.+.|..+.|++.+. .|++|+.||.|.|||+......... -......|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 89999999997652 23456678999999999999766 8999999999999999875332222 1124567999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCC--CeeEEEEEeCCCcCEEEEEECC---CeEEEEECCC-CcE
Q 002502 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQT-KSC 221 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~ 221 (915)
++|+.+....|++++.+|.+.|||++..+++..+..+.. .+..+.|+|+... .+++++.| -.|.+||+|. ..+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCc
Confidence 999997888999999999999999999988887765554 4678999999876 34444443 3699999986 457
Q ss_pred EEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCC-eEEEEecCCeEEEe
Q 002502 222 VQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVK 298 (915)
Q Consensus 222 ~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~g~~dg~v~i~ 298 (915)
++.+.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+|.|.|+
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 88889999999999999977 7899999999999999999999999998888999999999876 78889999999884
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=4.2e-20 Score=191.70 Aligned_cols=277 Identities=19% Similarity=0.252 Sum_probs=204.4
Q ss_pred EEEEcC---CCCEEEEEEcCCeEEEEECCCCce------eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002502 20 SVDLHP---SEPWILASLYSGTVCIWNYQSQTM------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 20 ~~~~sp---~~~~la~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
+..|++ ....||++..+|.|.++|...... ++....|...|..+.|.|-...|++++.|.++++||+++.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 366666 344789999999999999766432 24556799999999999977789999999999999999998
Q ss_pred eeEE--EecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCce------EEE--------------------EeecC
Q 002502 91 KVKV--FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM------CTQ--------------------IFEGH 141 (915)
Q Consensus 91 ~~~~--~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~------~~~--------------------~~~~~ 141 (915)
.+.. +.+|...+.+++|.|+++ .+++|+.||.|.|||++-... +.. ....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999776 577999999999999864310 000 01112
Q ss_pred Ccc----eEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCCceEE--------ecC---CCCeeEEEEEeCCCcCEEEEE
Q 002502 142 SHY----VMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL--------DAH---QKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 142 ~~~----i~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~ 205 (915)
... |+.+.|- |...|++++. |+.|+|||++........ ..+ ..++.++.. +..+.+|++.
T Consensus 214 s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssGt~L~As 289 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFAS 289 (720)
T ss_pred cCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCCCeEEEE
Confidence 223 4445444 7889999888 999999999876543222 122 234445554 4444488888
Q ss_pred ECCCeEEEEECCCC--cEEEEecCCccC--eEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCCccEEEEEEe
Q 002502 206 SDDHTAKVWDYQTK--SCVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (915)
Q Consensus 206 ~~dg~i~iwd~~~~--~~~~~~~~~~~~--v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s 280 (915)
+.|+.|++||+.+- .++..+.++... -..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.
T Consensus 290 CtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 290 CTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred ecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 88999999999753 244444443221 1233578999999999999999999998766 455667788899999998
Q ss_pred cCC-CeEEEEecCCeEEEecC
Q 002502 281 KSS-RRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 281 ~~~-~~l~~g~~dg~v~i~~~ 300 (915)
|.. .-++++++|..+.+|..
T Consensus 370 pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 370 PSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cccCCCceeeccCcceEEEec
Confidence 852 34666699999999853
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=5.6e-19 Score=174.15 Aligned_cols=317 Identities=18% Similarity=0.318 Sum_probs=208.9
Q ss_pred CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---------ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEE
Q 002502 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
..++.++.|.+.+.+.+++|+.|..|++|-+..+.+ ...+..|...|+++.|+|+|+ ++++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 356889999986666999999999999998865432 234568999999999999998 899999999999
Q ss_pred EEECC--------C--------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEE
Q 002502 213 VWDYQ--------T--------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (915)
Q Consensus 213 iwd~~--------~--------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (915)
+|-.. + ......+.+|...|..++|+|++.++++++.|+.+++||+..|.....+..|...+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 1234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002502 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (915)
Q Consensus 277 i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (915)
++|.|-++++++-+.|...+.......++.... .. .+ +.... ...++-....+..-++.....
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~--------~~-~~----m~~~~----~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH--------GL-DI----MPAKA----FNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeee--------ee-eE----eeecc----cCCCCcceeeeeecCchhhhh
Confidence 999999999999887774443211111111000 00 00 00000 011111111222224445567
Q ss_pred ceEEECCCCCEEEEEc-----CCcEEEEEeecccccCc-cceeEEEEecC-CcE-EEEecCCeEEEeccCcceeeeeecC
Q 002502 357 QSLKHNPNGRFVVVCG-----DGEYIIYTALAWRNRSF-GSALEFVWSSD-GEY-AVRESSSKIKIFSKNFQEKRSVRPT 428 (915)
Q Consensus 357 ~~l~~s~~g~~lav~~-----~~~~~i~~~~~~~~~~~-~~~~~~~~s~d-g~~-l~~~~~~~v~v~~~~~~~~~~~~~~ 428 (915)
+.++|+|||.+|++.. .+.+..........+.. .++.. .|. ++. +++... -| .|.+ +.......-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~---lp~~~k~~lavr~~-pV-y~el--rp~~~~~~~ 306 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR---LPSPKKPALAVRFS-PV-YYEL--RPLSSEKFL 306 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee---cCCCCcceEEEEee-ee-EEEe--ccccccccc
Confidence 8899999999988653 33332222111111110 11111 111 111 111110 00 0100 000000000
Q ss_pred c-ccceeecCcEEEEeeCCeEEEEeccCCcEEEEEe----ccccEEEEcCCCCEEEEEeCCeEEE
Q 002502 429 F-SAERIYGGTLLAMCSNDFICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDTSFYI 488 (915)
Q Consensus 429 ~-s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~~~~~~ 488 (915)
| -| .+-.+|+++.+.|++||.++..++.... ..++.++||+||..|++.+.|+.+-
T Consensus 307 ~~lp----yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 307 FVLP----YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccc----cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 1 11 2557888999999999999998887766 4899999999999999999999884
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-20 Score=184.96 Aligned_cols=264 Identities=17% Similarity=0.266 Sum_probs=206.9
Q ss_pred EEEcCCeEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEE--eCCCeEEEEECCC--CceeEEEecCCCCEEEE
Q 002502 32 ASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAG--ADDMFIRVYNYNT--MDKVKVFEAHTDYIRCV 105 (915)
Q Consensus 32 ~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g--~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~l 105 (915)
+++....++|||....+....+..|. ..+.++.|+.+.. |+++ +.|..+++|.-.. ++....-+...+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33445579999998776665555443 3488999988765 4444 4577899996432 12222222223345666
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC-
Q 002502 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH- 184 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 184 (915)
+......++++|+..+.|+|||++.. .+.+.+.+|...|+++.++- ...+|++++..|.|.+..+.++.....+...
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 66666789999999999999999965 78889999999999999998 7789999999999999999988777777644
Q ss_pred CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEe-cCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCCCce
Q 002502 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
...|.-+.|++.... +|.+++++|.|.+||.....++..+ ..|..+...|||+|... +|++.+.|..|.+||....+
T Consensus 164 gqsvRll~ys~skr~-lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRF-LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCeEEEeecccccce-eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 344568999988764 7888999999999999877766554 46889999999999665 77888999999999999777
Q ss_pred eeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecC
Q 002502 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~ 300 (915)
....+.+. .+..+++|+++|.+|++|+..|.++.+..
T Consensus 243 s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 243 STDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ccceeeec-CCcceeeecCCceEEEeecCCceEEEEec
Confidence 77666655 68899999999999999999999988643
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=7.7e-17 Score=181.61 Aligned_cols=285 Identities=28% Similarity=0.486 Sum_probs=231.4
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-eeEEEEecCC-CEEEEEE-eCCCC-EEEEEeC-CCeEEEE
Q 002502 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVTEL-PVRSAKF-VARKQ-WVVAGAD-DMFIRVY 84 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-s~~~~-~l~~g~~-dg~i~vw 84 (915)
.+..|...+.++.+++.+..++.++.++.+.+|+...+. ....+..+.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999988886 6666766443 7777777 88887 5555444 8999999
Q ss_pred ECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC-EEEEE
Q 002502 85 NYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASA 161 (915)
Q Consensus 85 d~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~~~ 161 (915)
+..+ ......+..|...|..++|+|++..+++++. |+.+++|+...+ .....+.+|...+.++.|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9998 7888889999999999999999998888885 999999999985 66777778999999999998 665 55555
Q ss_pred ECCCcEEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-EEEecCCccCeEEEEEeC
Q 002502 162 SLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~ 239 (915)
+.|+.|++||...+.... .+..|.... ...|++++. ++++++.++.+++|+...... +..+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 899999999988666666 577777765 447888874 788999999999999987664 444467888999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCceeeeeec--cCCccEEEEEEecCCCeEEEE-ecCCeEEEec
Q 002502 240 ELPIIITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIG-YDEGTIMVKI 299 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~s~~~~~l~~g-~~dg~v~i~~ 299 (915)
++..+++++.|+.+++|+..+........ .+...+..+.+.+++..++.+ ..++.+.+|.
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 88888889999899999988887666655 565568899883332455555 5667777653
No 168
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=6.2e-19 Score=187.74 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=95.9
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH---cCCHHH
Q 002502 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM---LGKLED 741 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~---~g~~~~ 741 (915)
..++.+|+++|++.++.|+++.|...|..++||-.+.++.+..|+ +.+.+++|...|+-...++++.. .|++-+
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk---~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK---TDKAARIAEESGDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC---chHHHHHHHhcccHHHHHHHHHHhhhhHHHHH
Confidence 345789999999999999999999999999999999999999999 88889999999998888887655 489999
Q ss_pred HHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcCh
Q 002502 742 CLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNP 783 (915)
Q Consensus 742 a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~ 783 (915)
|+.+|.++.-+.-|+.+++.+.... ++|.-.|.....
T Consensus 986 Av~FfTrAqafsnAIRlcKEnd~~d-----~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 986 AVKFFTRAQAFSNAIRLCKENDMKD-----RLANLALMSGGS 1022 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHH-----HHHHHHhhcCch
Confidence 9999999999999999999986522 346666665543
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=2e-19 Score=171.88 Aligned_cols=384 Identities=14% Similarity=0.196 Sum_probs=237.2
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeEEEecC
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
-++|||+|+++|+.+.. .+.|-|..+-+..+.+.. -..|..+.|..|..+++.+ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999999855 888999888776655543 3457789999999887765 56889999999988888888888
Q ss_pred CCCEEEEEEcCCCCEE-EEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC---C
Q 002502 99 TDYIRCVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~---~ 174 (915)
..++.+++|||+|+.| .+...+-.|.+|.+.+.. .. .+.-.+..+..++|+| ++++.+.++.-...-.+++. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~-~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GY-LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccce-eE-EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 8999999999999655 466678999999999862 22 2222234468899999 88888887753211111111 1
Q ss_pred CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEE
Q 002502 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~ 254 (915)
-.....+....-..+.+.|+|+|+ .+ .+||.--.-.+.... -.-.+..+.|+|.+++|++|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~l---------aVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--WL---------AVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--EE---------EEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhh
Confidence 112233344455567889999887 34 455532111122221 224578899999999999999999999
Q ss_pred EEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe-cCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccc
Q 002502 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~-~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~ 333 (915)
+.+--+.+....+ +-.++ .|.+..+ +.....++.
T Consensus 236 vlnh~tWk~f~ef------------------lhl~s~~dp~~~~-----------------~~ke~~~~~---------- 270 (447)
T KOG4497|consen 236 VLNHFTWKPFGEF------------------LHLCSYHDPTLHL-----------------LEKETFSIV---------- 270 (447)
T ss_pred hhceeeeeehhhh------------------ccchhccCchhhh-----------------hhhhhcchh----------
Confidence 8775444443332 21111 1111000 000000000
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEE----------e--ecccccCccceeEEEEecCC
Q 002502 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYT----------A--LAWRNRSFGSALEFVWSSDG 401 (915)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~----------~--~~~~~~~~~~~~~~~~s~dg 401 (915)
.....++.|.|..--.-.+ ...-.+|. . ...+....-.+--++||+|.
T Consensus 271 -------------------ql~~~cLsf~p~~~~a~~~-~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 271 -------------------QLLHHCLSFTPTDLEAHIW-EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred -------------------hhcccccccCCCccccCcc-ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 0000112222211000000 00000110 0 11122234456678899999
Q ss_pred cEEEEecC---CeEEEeccCcceeeee-------e-cCcccceeecCcEEEEeeCC-eEEEEeccCCcEEEEEe-c-ccc
Q 002502 402 EYAVRESS---SKIKIFSKNFQEKRSV-------R-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID-V-TVK 467 (915)
Q Consensus 402 ~~l~~~~~---~~v~v~~~~~~~~~~~-------~-~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~-~-~i~ 467 (915)
.|+++..| +.+-+||++......+ + ..+.|. ...|+++... .+++|.......+..-. | .|.
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~----~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~ 406 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQ 406 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC----CceEEEEcCCceEEEEcCCCceEEecCCCCceee
Confidence 99998885 5788998664332221 1 145565 6677777666 99999876655554433 2 789
Q ss_pred EEEEcCCCCEEEEEeCCeEEEE
Q 002502 468 NLYWADSGDLVAIASDTSFYIL 489 (915)
Q Consensus 468 ~v~~s~dg~~la~~~~~~~~~~ 489 (915)
.+.|..+|..++..++|.+++-
T Consensus 407 ~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 407 KLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred eEEecCCCcEEEEEcCCceEEE
Confidence 9999999999999999988864
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.9e-20 Score=192.11 Aligned_cols=264 Identities=21% Similarity=0.301 Sum_probs=201.2
Q ss_pred hhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC--------CceeEEEEecCCCEEEEEEeCCCCEEEEEe
Q 002502 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------QTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (915)
..++.++..|.+.|+.++|+|..+.|++++.+|.+.+|+++. .+.+.+|.+|.+||.|++..+++..+.+|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345567888999999999999999999999999999999932 256778999999999999999999999999
Q ss_pred CCCeEEEEECCC----------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceE
Q 002502 77 DDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM 146 (915)
Q Consensus 77 ~dg~i~vwd~~~----------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 146 (915)
.||+|+.|++.. ......+.+|.+.++.+++|+...+|++++.||+++.|+......+........+...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 999999996541 1234567899999999999999999999999999999998766332222122233445
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec-------CCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC
Q 002502 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
++.+........++...-+.-.+++.........+.. ....++.+.++|..+ +.+++..|+.|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC--eeEecccCCceeccccccc
Confidence 5655431222233322223333333333333333221 124467788888775 8999999999999999999
Q ss_pred cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC
Q 002502 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 220 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.++.....|...++++++.|+|.+|++|+.||.+++|.+....++.....|
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999999999999999999999998766655544433
No 171
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-17 Score=178.81 Aligned_cols=417 Identities=16% Similarity=0.216 Sum_probs=273.6
Q ss_pred hhhhhcccCCCCEEEEEEcCCCC---EEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEE-----------------
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF----------------- 65 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~----------------- 65 (915)
+..+.|.+|..+++.+.+.|... ++.+++.+|.|++||...+.+++++..+- ++..+.+
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~ 126 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVED 126 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeeccc
Confidence 45668999999999999998654 56788899999999999998888776321 2222211
Q ss_pred ------------------------------------------eCCCCEEEEEeCCCeEEEEECCCCceeEE----EecCC
Q 002502 66 ------------------------------------------VARKQWVVAGADDMFIRVYNYNTMDKVKV----FEAHT 99 (915)
Q Consensus 66 ------------------------------------------s~~~~~l~~g~~dg~i~vwd~~~~~~~~~----~~~~~ 99 (915)
++.|.+.... .+..+.+|+..+...... -..|.
T Consensus 127 ~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Ht 205 (792)
T KOG1963|consen 127 YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHT 205 (792)
T ss_pred ceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhc
Confidence 1111111111 223355666555331111 11466
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002502 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
-.++|.++||+++++++|..||.|.+|.--. .....+.+.=|...|+++.|++ ++.+|++|+..|.+.+|.+.+++
T Consensus 206 f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 206 FNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC
Confidence 6689999999999999999999999996432 2233456667888999999999 99999999999999999999988
Q ss_pred CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC-----------ccCeEEEEEeCCCCEEE
Q 002502 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-----------THNVSAVCFHPELPIII 245 (915)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~v~~~~~~~~l~ 245 (915)
..-+..-..+|..+.++|+++ +.+....|..|.+....+.....++.+. .+-.+.++++|.-+.++
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred -cccccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 444566788999999999988 6788888999999987655443333321 23367789999777788
Q ss_pred EEEcCCeEEEEeCCCceeeeeec-----cCC------ccEEEEEEecCCCeEEEEec--------CCeEEEecCCCccee
Q 002502 246 TGSEDGTVRIWHATTYRLENTLN-----YGL------ERVWAIGYMKSSRRIVIGYD--------EGTIMVKIGREEPVA 306 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~-----~~~------~~v~~i~~s~~~~~l~~g~~--------dg~v~i~~~~~~~~~ 306 (915)
-.+..|.|.+||+.+.+.+..+. .+. -.+++++.+..|++++++-. +|.+.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~---------- 431 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS---------- 431 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE----------
Confidence 88899999999998776554432 111 23556666666777776432 12222
Q ss_pred EEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEE-cCCcEEEEEeecc
Q 002502 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVC-GDGEYIIYTALAW 384 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~-~~~~~~i~~~~~~ 384 (915)
..+|......+.+.+.+... . ++....+..+..+|..+ ..+++ .+|.+.+|-....
T Consensus 432 ------LKFW~~n~~~kt~~L~T~I~---~-------------PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~ 489 (792)
T KOG1963|consen 432 ------LKFWQYNPNSKTFILNTKIN---N-------------PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDD 489 (792)
T ss_pred ------EEEEEEcCCcceeEEEEEEe---c-------------CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecc
Confidence 23444444444444332211 1 22333333444444444 44444 5999999977443
Q ss_pred ccc---------------CccceeEEEEecCCcEEEEecCCeEEEeccCcc-eeeeeec---------CcccceeecCcE
Q 002502 385 RNR---------------SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVRP---------TFSAERIYGGTL 439 (915)
Q Consensus 385 ~~~---------------~~~~~~~~~~s~dg~~l~~~~~~~v~v~~~~~~-~~~~~~~---------~~s~~~i~~g~~ 439 (915)
++. +..++...+||.||..++.+.+++|.+||.... +...... .|..... ....
T Consensus 490 ~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 568 (792)
T KOG1963|consen 490 SNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQ-NDGA 568 (792)
T ss_pred cccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccc-cccc
Confidence 211 134678899999999999999999999996542 1111100 1111100 1224
Q ss_pred EEEeeCCeEEEEeccCCcEEEE
Q 002502 440 LAMCSNDFICFYDWAECRLIRR 461 (915)
Q Consensus 440 La~~~~~~i~~~d~~~~~~i~~ 461 (915)
+..++...+.+|++-+..++..
T Consensus 569 ~~~~~~~~l~~WNll~~~l~w~ 590 (792)
T KOG1963|consen 569 LVHATQQRLSVWNLLSMSLIWN 590 (792)
T ss_pred eeeccCceEehHhhhhhheecc
Confidence 4455555999999988887773
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.1e-20 Score=209.99 Aligned_cols=246 Identities=19% Similarity=0.304 Sum_probs=203.2
Q ss_pred CCCEEEEEEcCCCCE----EEEEEcCCeEEEEECCCC------ceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002502 15 SERVKSVDLHPSEPW----ILASLYSGTVCIWNYQSQ------TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~----la~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~v 83 (915)
..+-..++|.+.|.. ||.|+.||.|.+||...- ..+.+...|.++|+.+.|++.+. +||+|++||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999998775 888888999999997652 34556778999999999999765 9999999999999
Q ss_pred EECCCCceeEEEe--cCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCC--cceEEEEEecCCCCEE
Q 002502 84 YNYNTMDKVKVFE--AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~--~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l 158 (915)
||++..+...... ...+.|.+++|+..- ..|++++.+|.+.|||++..+.++.. ..+. ..+..+.|+|+....+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCCceee
Confidence 9998765544442 246789999999854 46788899999999999987444333 3332 3477899999888888
Q ss_pred EEEECCC---cEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEE
Q 002502 159 ASASLDR---TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 234 (915)
++++.|. .|.+||++.. .+.+++.+|..+|.++.|++.+.. ++++++.|+.|.+|+.++++.+..+......+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999764 466777899999999999998754 8999999999999999999999999988889999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEeCCCce
Q 002502 235 VCFHPELP-IIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 235 v~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (915)
+.|+|..+ .+++.+-||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 78888999999999987543
No 173
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=172.87 Aligned_cols=271 Identities=15% Similarity=0.221 Sum_probs=204.6
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceeEEE--ecCC-CCE
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVYNYNTMDKVKVF--EAHT-DYI 102 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~-~~i 102 (915)
+.+|++..+|.|++||..+++.+..+++++..+..++|.. ....+.+++.||+|++||+++......+ ..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 4677899999999999999987665444 3454 466
Q ss_pred EEEEEcCCCCEEEEEEc----CCeEEEEECCCCce-EEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC
Q 002502 103 RCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 177 (915)
.|++.+-.++.+++|+. +-.|.+||++...+ +......|...|++++|+|.++++|++|+.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77887777778887753 67899999998756 55567789999999999999999999999999999999976432
Q ss_pred ---ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCc------------cCeEEEEEeC-CC
Q 002502 178 ---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------HNVSAVCFHP-EL 241 (915)
Q Consensus 178 ---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~v~~~~-~~ 241 (915)
+...-.+...|.++.|..++-. .|.+-+...+..+|++..+.+...+.... ..+... .+| +.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK 278 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc
Confidence 2222346778999999987733 37788888999999999887655443221 111111 223 33
Q ss_pred CEEEEEEc-CCeEEEEeCC---Cce---eeeeecc-CCccEEEEEEecCCCeEEEEecCCeEEEecC
Q 002502 242 PIIITGSE-DGTVRIWHAT---TYR---LENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 242 ~~l~~~~~-dg~v~iwd~~---~~~---~~~~~~~-~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~ 300 (915)
..++.++. -|...++-+. ++. .+..+.+ |..-|.++.|...+..+.+|+.||.+.+|..
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44444443 4555555433 333 3444554 4566888999999999999999999999964
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=5.8e-19 Score=174.02 Aligned_cols=279 Identities=20% Similarity=0.266 Sum_probs=209.0
Q ss_pred CCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCc---------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 14 RSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 14 h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
...+|.++.|+++.. .||+|+.|..|+||-+..+. ....+..|...|+++.|+|+|..|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999876 99999999999999876432 23346679999999999999999999999999999
Q ss_pred EECC--------C--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEE
Q 002502 84 YNYN--------T--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 84 wd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (915)
|-.. + ....+.+.+|...|..++|+|++.++++++-|..+++||+..+ .....+..|.+.+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccce
Confidence 9765 2 1234556789999999999999999999999999999999998 888899999999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-------------------cC----CCCeeEEEEEeCCCcCEEEE
Q 002502 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-------------------AH----QKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------~~----~~~v~~~~~~~~~~~~~l~~ 204 (915)
++|.| -++++++-+.|...+.+++.....+.... .| ..-...++|+|+|. ++++
T Consensus 171 vawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~--llvt 247 (434)
T KOG1009|consen 171 VAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS--LLVT 247 (434)
T ss_pred eecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc--EEEc
Confidence 99999 78899998888877776664332211110 01 12234677888876 5665
Q ss_pred EEC----CC-----eEEEEECCC-CcEEEEecCCccCeEEEEEeC------------------CCCEEEEEEcCCeEEEE
Q 002502 205 GSD----DH-----TAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP------------------ELPIIITGSEDGTVRIW 256 (915)
Q Consensus 205 ~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~------------------~~~~l~~~~~dg~v~iw 256 (915)
... .+ ..++|+-.. .++...+.....+...+.|+| -+-.+++++. ..|.+|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvy 326 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVY 326 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEe
Confidence 432 12 234554332 334555555555555555554 1224555554 489999
Q ss_pred eCCCceeeeee-ccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 257 HATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~~~~~~~~~-~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
|..+..++... +.|...++.++|+++|..+++.+.||...+
T Consensus 327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 98887765443 456789999999999999999999998876
No 175
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=9.1e-19 Score=164.93 Aligned_cols=241 Identities=20% Similarity=0.356 Sum_probs=194.9
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECC
Q 002502 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 12 ~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~vwd~~ 87 (915)
.+|.-.|..+.|-| |...+.+++.|.+++|||..+-+....|+ .++.|.+-+|+|- ..++|+|..+-.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 55577788889999999999988888887 5678999999984 4578888899999999999
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCceEEEEe--------------ecCCcceEEEEEec
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIF--------------EGHSHYVMQVTFNP 152 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~i~~~~~~p 152 (915)
+|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++.-.-+...+ ..|.+.+..++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999998876 6799999999999998542333332 34677899999998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCC----CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEe
Q 002502 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (915)
++.++++++.|..+++|+..+|.....-. .|.. .+. +. +-+.+ .++---.++.+.++++-.+..++.+
T Consensus 257 -d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~--vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 -DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSD--VFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred -cchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccc--eEEEEecCCeEEEEEccCceEEEee
Confidence 89999999999999999998775432211 1111 111 22 11222 3444445689999999999999999
Q ss_pred cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 226 ~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
..|...|.|..+.|+-+...+|..|+.|..|..
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999999999975
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.6e-19 Score=171.46 Aligned_cols=243 Identities=21% Similarity=0.276 Sum_probs=196.4
Q ss_pred cCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECC
Q 002502 13 QRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 13 ~h~~~v~~~~~sp~----~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~ 87 (915)
.|...-..++|+-+ .++||+|+.-|.|+|.|+.+++..+.+.+|...|+.+.+.|+. +++++++.|..|++||++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777888899764 4689999999999999999999999999999999999999976 678899999999999999
Q ss_pred CCceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce------------------------EE---EE
Q 002502 88 TMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------------------------CT---QI 137 (915)
Q Consensus 88 ~~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~---~~ 137 (915)
++.++..|. +|.+.|.++.|+++|.+|++|+.|.+|++|++..... .. .+
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999998874 7999999999999999999999999999999873210 00 01
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC-CC-------------CceEEecCCCCeeEEEEEeCCCcCEEE
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PD-------------PNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
..-|..+|-|+.|- ++++++-+-++.|..|.... .+ ....+.-....+.-+.|.-+.-+..|+
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 22467777788875 57889988899999998721 11 122334455667778887777666899
Q ss_pred EEECCCeEEEEECCCCcEE--EEe--cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 204 TGSDDHTAKVWDYQTKSCV--QTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
.|...|.|.+||++...+. .++ ......|...+|+.||.+|+....|++|.-||.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999999876542 112 123456889999999999999999999999984
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=8e-19 Score=164.96 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=196.5
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEEcC--------CeEEEEECCCC---------ceeEEEE-ecCCCEEEEEEeCC
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYS--------GTVCIWNYQSQ---------TMAKSFE-VTELPVRSAKFVAR 68 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~d--------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~s~~ 68 (915)
+.+.|..|.+.|..++-+|..+.+++..++ -.+.||.+... +++..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 456778899999999999977665554433 24789987643 2233333 34568999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCce-eEEEe-----cCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCceEEEEeec
Q 002502 69 KQWVVAGADDMFIRVYNYNTMDK-VKVFE-----AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+..+++-. |..|.+|++..+.. +..+. .|....++-+|+| +++.+++. .|+++..||+++......+-..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99998876 78899999987766 33332 3456688899999 56666655 5689999999988677777778
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC
Q 002502 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
|...|..+.|+|+...+|++|+.||.|++||.+.. .+++.+.+|..-|.++.|+|..++ ++++|+.|..|.+|....-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecccc
Confidence 99999999999977888999999999999999865 467888999999999999998876 8999999999999965321
Q ss_pred -----------------------------cEEEEecCCccCeEEEEEeCCCC-EEEEEEcCCeEEEEeCC
Q 002502 220 -----------------------------SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (915)
Q Consensus 220 -----------------------------~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (915)
..+.++..|...|.+++|+.-.+ ++++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345667889999999998777 45677899999886644
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=163.77 Aligned_cols=268 Identities=23% Similarity=0.326 Sum_probs=201.8
Q ss_pred CCEEEEEEc----CCeEEEEECCCCc--e-eEEEEecCCCEEEEEEeCCCCEE-EEEeCC-------CeEEEEECCC---
Q 002502 27 EPWILASLY----SGTVCIWNYQSQT--M-AKSFEVTELPVRSAKFVARKQWV-VAGADD-------MFIRVYNYNT--- 88 (915)
Q Consensus 27 ~~~la~~~~----dg~v~iwd~~~~~--~-~~~~~~~~~~v~~~~~s~~~~~l-~~g~~d-------g~i~vwd~~~--- 88 (915)
.-.+++|.. ++.|++.++..+. + .+.|..|.+.|..++-+|..+.| +++..+ -.+.||.+..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 345666653 6788888776542 2 24566688999999999966554 444331 2577998753
Q ss_pred ------CceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee-----cCCcceEEEEEec-CCC
Q 002502 89 ------MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHYVMQVTFNP-KDT 155 (915)
Q Consensus 89 ------~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~p-~~~ 155 (915)
.+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......+. .+....++-+|+| .++
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 22333443 4556899999999999888776 77899999997755333222 3566788999999 677
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCccCeE
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVS 233 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~ 233 (915)
+.+++. .|+++..||+++.+....+ ..|...|..+.|+|+... +|+++++||.|++||.+. ..+++.+.+|...|+
T Consensus 185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 777775 4899999999988776655 468888999999998765 899999999999999986 558999999999999
Q ss_pred EEEEeCC-CCEEEEEEcCCeEEEEeCCCc-----------------------------eeeeeeccCCccEEEEEEecCC
Q 002502 234 AVCFHPE-LPIIITGSEDGTVRIWHATTY-----------------------------RLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 234 ~v~~~~~-~~~l~~~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~i~~s~~~ 283 (915)
++.|+|. .++|++||.|..|.+|....- ..+.++..|...|++++||.-.
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 9999994 468899999999999964311 1233566778899999999876
Q ss_pred Ce-EEEEecCCeEEE
Q 002502 284 RR-IVIGYDEGTIMV 297 (915)
Q Consensus 284 ~~-l~~g~~dg~v~i 297 (915)
.+ +|+-+.||.+.|
T Consensus 343 PWiFASLSYDGRviI 357 (370)
T KOG1007|consen 343 PWIFASLSYDGRVII 357 (370)
T ss_pred CeeEEEeccCceEEe
Confidence 65 455788888887
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=4.2e-20 Score=196.77 Aligned_cols=281 Identities=19% Similarity=0.265 Sum_probs=231.1
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
+++..+.|.+|-..|.|..|...|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+..++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEe-----ecCCcceEEEEEecCCCCEE
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~l 158 (915)
|.+.++..+..+.+|++.|++++|+|-. +.+.||++++||.+-. ..... ......+.++.|.. .+..+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~-~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFEN-NGDRF 331 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccc-ccccc
Confidence 9999999999999999999999999954 7789999999998821 11111 11234456666665 67889
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002502 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 238 (915)
++++.|+.-..|....- ..+...+.-+..+.+.+ .+.+++-.+..+++|++.+|...+.+.+|...+..+.++
T Consensus 332 ~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccccCCcccccchhhHh------hhhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 99999998877765321 11222222222222222 267777788899999999999999999999999999999
Q ss_pred CCCCEE-EEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 239 PELPII-ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 239 ~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
|-.+.+ .+++.||...|||+..|.+++.+..+...+....||++|+.++...+-|.+.|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 966644 578999999999999998887766666788899999999999999999999885
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.4e-18 Score=164.56 Aligned_cols=293 Identities=11% Similarity=0.151 Sum_probs=224.2
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC------CceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCe
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMF 80 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~ 80 (915)
++.+.+|.+.|.++.||.++++|++|+.|..+++|++.. .+.+.... .|.+.|.|++|.....++.+|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 456779999999999999999999999999999999754 23343333 35689999999999999999999999
Q ss_pred EEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecCCcceEEEEEecCCCC
Q 002502 81 IRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~ 156 (915)
|..-|+++.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+....... ..........++.|+|..+.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999888877752 235899999999999999999999999999986532222 22234456788999998889
Q ss_pred EEEEEECCCcEEEEECCCCCCc-eEE------ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-EEEecCC
Q 002502 157 TFASASLDRTIKIWNLGSPDPN-FTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGH 228 (915)
Q Consensus 157 ~l~~~~~dg~i~i~d~~~~~~~-~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~ 228 (915)
+|++.+..+-+-+||.+..... ... ......-..+.|+|+|++ +++--....-.+||+.+.++ +..+. |
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S~R~~V~k~D-~ 285 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFISQRCFVLKSD-H 285 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe--ehhhhccCCCEEeeeecccceeEecc-C
Confidence 9999999999999999765422 111 111222356789999884 66655555666788876444 33333 2
Q ss_pred cc-------CeEEEEEeCCCCEEEEEEcCCeEEEEeCCC----------c-------------eeeeeeccCCccEEEEE
Q 002502 229 TH-------NVSAVCFHPELPIIITGSEDGTVRIWHATT----------Y-------------RLENTLNYGLERVWAIG 278 (915)
Q Consensus 229 ~~-------~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~----------~-------------~~~~~~~~~~~~v~~i~ 278 (915)
.. .+.+++|..+. .+++|+.+-.|++|.+.. | +.+..+.+|..-+..+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 22 36677887765 499999999999998642 1 12356778888889999
Q ss_pred EecCCCeEEEEecCCeEEEecCCCcc
Q 002502 279 YMKSSRRIVIGYDEGTIMVKIGREEP 304 (915)
Q Consensus 279 ~s~~~~~l~~g~~dg~v~i~~~~~~~ 304 (915)
|+|...+|++.+-...+.+|.....|
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred ecCCcceEeccchhhheeccccccCC
Confidence 99999999999999999999765554
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.4e-18 Score=184.42 Aligned_cols=286 Identities=18% Similarity=0.300 Sum_probs=217.9
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEec---CCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFVA--RKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~g~~dg~i~vwd 85 (915)
..+.....+.+.|+|-.+.++++...-.|+|||.+.++....|..+ ...|+.+.+.. |...+++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3444556788999999999999988889999999999988877754 45788888876 456899999999999996
Q ss_pred C-CCC----ceeEEEec-------CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecC
Q 002502 86 Y-NTM----DKVKVFEA-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 86 ~-~~~----~~~~~~~~-------~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (915)
- .++ +.+..+.+ ..+.=.-++|.....+|+++++-..|+|||......+..+..+....++++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 3 232 22322221 11111446888877788888888999999999875555555566677888776655
Q ss_pred CCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCC--eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE--EEec
Q 002502 154 DTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLE 226 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~ 226 (915)
.++.++.|..||.|++||.+...+ +...+.|... |..+.+.+.|-+ -|++|+.+|.|++||++..... .++.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceee
Confidence 689999999999999999876543 4555667766 999999887765 6999999999999999974221 2222
Q ss_pred CC---ccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc-------CCccEEEEEEecCCCeEEEEecCCeEE
Q 002502 227 GH---THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------GLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 227 ~~---~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~i~~s~~~~~l~~g~~dg~v~ 296 (915)
.| .+.++++..|++.+++++|+. +.|+||++. |+.+..+.. ..+.+.|++|+|..-.+|+|+.|.+|.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 225899999999999999998 899999976 555444433 235679999999999999999999999
Q ss_pred Eec
Q 002502 297 VKI 299 (915)
Q Consensus 297 i~~ 299 (915)
++.
T Consensus 1377 iYs 1379 (1387)
T KOG1517|consen 1377 IYS 1379 (1387)
T ss_pred Eee
Confidence 864
No 182
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.8e-18 Score=178.34 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=184.1
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEE--EEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVARK-QWVVAGADDMFIRVYN 85 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd 85 (915)
+....|-..|..+.|-|....|++++.|.++++||+++.+++.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34567999999999999667888999999999999999888776 88999999999999965 5678999999999999
Q ss_pred CCCCc---------------------------eeEEEecCCCCEEE---EEEcCCCCEEEEEEc-CCeEEEEECCCCceE
Q 002502 86 YNTMD---------------------------KVKVFEAHTDYIRC---VAVHPTLPYVLSSSD-DMLIKLWDWEKGWMC 134 (915)
Q Consensus 86 ~~~~~---------------------------~~~~~~~~~~~i~~---l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 134 (915)
+.-.. .+..-..+...|.+ +.+..|...|++++. |+.|+|||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 74211 01112234455555 566678888998888 999999999875221
Q ss_pred EE-------EeecC---CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC--CceEEecCCCCee--EEEEEeCCCcC
Q 002502 135 TQ-------IFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVN--CVDYFTGGDKP 200 (915)
Q Consensus 135 ~~-------~~~~~---~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~--~~~~~~~~~~~ 200 (915)
.. .+..| ...+.++.... .|++|++.+.|++|++|++.+-. +...+.++...-. .-..+|++.
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-- 330 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-- 330 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--
Confidence 11 11122 23466676665 56777777779999999997643 3333333322211 223455555
Q ss_pred EEEEEECCCeEEEEECCCCc-EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCce
Q 002502 201 YLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++++|+.|...++|.+.+.+ ....+.+|...|++++|.|.- .-+++++.|..+++|++.++-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999999999999998754 466677899999999998843 346677999999999986553
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.5e-17 Score=181.02 Aligned_cols=260 Identities=16% Similarity=0.195 Sum_probs=197.9
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCce--eEE----EecCCCCEEEEEEcC
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK--VKV----FEAHTDYIRCVAVHP 109 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~~~--~~~----~~~~~~~i~~l~~s~ 109 (915)
+.+.||+++........-....+|+|+.|+|. ...++.|+.+|+|.+||+..+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999877333333336778999999995 56677778899999999987655 222 236899999999977
Q ss_pred CCC--EEEEEEcCCeEEEEECCCCceEEEEe-----e------cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC
Q 002502 110 TLP--YVLSSSDDMLIKLWDWEKGWMCTQIF-----E------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (915)
Q Consensus 110 ~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-----~------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 176 (915)
+-. -+++++.||.|..|+++.-..+.... . .....++++.|.|.+.+.|++|+..|.|..-+..+.+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 49999999999999887532211111 1 1234588999999899999999999998874433322
Q ss_pred --------CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC-CCcEEEEecCCccCeEEEEEeCCCC-EEEE
Q 002502 177 --------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELP-IIIT 246 (915)
Q Consensus 177 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~ 246 (915)
....+..|.++|+++.++|-+.. .+++++ |-+++||... ...++..+..+...|++++|||..+ .+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 23355678899999999999876 444444 8999999987 6677877877788899999999876 6667
Q ss_pred EEcCCeEEEEeCCCc--eeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 247 GSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 247 ~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+..||.|.+||+... .+..+..........+.|++.|+.|++|...|.+.++
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 778999999998643 3455555555677889999999999999999999985
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=4.4e-18 Score=175.89 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=121.9
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCC-------CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEEC
Q 002502 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.|+.+.|+|-|...|++++.||.|++|.+..+ ++...+..|...|+++.|+|-... +|++++.|-+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence 47889999989999999999999999998543 455677889999999999997654 8999999999999999
Q ss_pred CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCC-ccEEEEEEecCCCeEEEEecC
Q 002502 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL-ERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~-~~v~~i~~s~~~~~l~~g~~d 292 (915)
++++....+.+|.+.|..++|+|+|+.+++.+.||+|++|..+.+. .+..-++.. .+--.+.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 9999999999999999999999999999999999999999987655 333322221 233456677777777665543
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=161.52 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=205.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
+....|++|.+.|+++.|..++. |.+|...|.|++|++++......+. .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 34456779999999999999886 8899999999999999998888888 57788999998888 568888899999999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCC-----CC----EEEEEEcCC-eEEEEECCCCceEEEEe----ecCCcceEEEEE
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPT-----LP----YVLSSSDDM-LIKLWDWEKGWMCTQIF----EGHSHYVMQVTF 150 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~-----~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~ 150 (915)
++.-+..+.. |+-.++++-|.+. ++ .++.-+... .+.+-|.... ...++. .+..+.+++..|
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCceeeeec
Confidence 9876544332 2223334444331 11 111111100 0111221111 111111 123456777776
Q ss_pred ecCCCC--EEEEEECCCcEEEEECCCCCCc----------eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC
Q 002502 151 NPKDTN--TFASASLDRTIKIWNLGSPDPN----------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 151 ~p~~~~--~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
....+. +++.|..+|.+.+||+.++..+ .....|..+|.++.|.+..+ .=++|+.+..+..|++..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeecc
Confidence 543333 4667888999999999887433 33356889999999986554 256777778888888763
Q ss_pred --CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCe
Q 002502 219 --KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 219 --~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~ 294 (915)
+.+ ...+....-.|..+.+-||++++++++.|+.||+|+.++.+++..+..|...|.+++|+|+...+|.++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 222 1222223456888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 002502 295 IMVKI 299 (915)
Q Consensus 295 v~i~~ 299 (915)
|.+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99983
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.9e-17 Score=147.93 Aligned_cols=268 Identities=16% Similarity=0.288 Sum_probs=195.3
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCC----------CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
..|.+-+|+|.+++|++|..+|.|.++.+++ ...+-..+.|+++|..++|. ..+|++|++ |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 4577789999999999999999999998754 12344457899999999998 345666654 9999998
Q ss_pred CCCCce------eEEE--ecCC-----CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEec
Q 002502 86 YNTMDK------VKVF--EAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 86 ~~~~~~------~~~~--~~~~-----~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
++.... +... ..|. ..|++|-..|..+.++.++.|+.++-||++++ .....+++|+.+|.++.-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 764332 1111 1122 35899999998888888889999999999999 88999999999999998754
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCceEEecCCC----------CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE
Q 002502 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
....+++|+.||++++||.++++.+..+...+. -|.+++ .+.+ ++++|+ ...+.+|.++..++.
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~ed--WlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNED--WLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCc--eEEecC-CCceeEEeccCCCce
Confidence 567899999999999999999988877643221 133333 2333 666654 568999999998887
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCC-CeEEEEecCCeEEE
Q 002502 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 223 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~-~~l~~g~~dg~v~i 297 (915)
..+. ...++..+.|..+ .+++++..+.|.-|.+. |.+...........++.+|+..- ++|.+++....+.+
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 7776 4566777888765 57888888899999865 55554454444445555554432 34444555454544
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2e-17 Score=158.11 Aligned_cols=233 Identities=21% Similarity=0.324 Sum_probs=187.9
Q ss_pred CCCEEEEEEc-------CCCCEEEEEEcCCeEEEEECCCCceeEEEEe--cCC---CEEEEEEeCCCCEEEEEeCCCeEE
Q 002502 15 SERVKSVDLH-------PSEPWILASLYSGTVCIWNYQSQTMAKSFEV--TEL---PVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 15 ~~~v~~~~~s-------p~~~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~---~v~~~~~s~~~~~l~~g~~dg~i~ 82 (915)
.+.|...+|- |+..++|+.+.+.-|++||.-+|++..++.. |.. ...+++|+|||.+|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 4557777774 6778899999999999999999998887765 322 45789999999999887 457899
Q ss_pred EEEC-CCCceeEEE-------ecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecC
Q 002502 83 VYNY-NTMDKVKVF-------EAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (915)
Q Consensus 83 vwd~-~~~~~~~~~-------~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (915)
+||+ +.|..-..+ .+..+.|.|++|||... .+++|+...++-||....+ .+...+.+|.+.|+.++|.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e- 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE- 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-
Confidence 9998 455432221 13467899999999665 8899999999999998877 77888889999999999999
Q ss_pred CCCEEEEEEC-CCcEEEEECCCC-CCceEEecCCC-CeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCc
Q 002502 154 DTNTFASASL-DRTIKIWNLGSP-DPNFTLDAHQK-GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT 229 (915)
Q Consensus 154 ~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 229 (915)
+++.|++|.. |-.|..||++.. .++..+..|.. .-..|-|.-+..+.+|++|+.+|.|++||+++ +..+..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 8889998876 678999999864 45566666655 44566676666666999999999999999988 77788888889
Q ss_pred cCeEEEEEeCCCCEEEEEEcC
Q 002502 230 HNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 230 ~~v~~v~~~~~~~~l~~~~~d 250 (915)
..+..++++|--+++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888887754
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=9.5e-17 Score=151.37 Aligned_cols=273 Identities=15% Similarity=0.221 Sum_probs=201.2
Q ss_pred CEEEEEEcC---CCCEEEEEEc----CCeEEEEECC--CCceeEEE-EecCCCEEEEEEeCCCC-----EEEEEeCCCeE
Q 002502 17 RVKSVDLHP---SEPWILASLY----SGTVCIWNYQ--SQTMAKSF-EVTELPVRSAKFVARKQ-----WVVAGADDMFI 81 (915)
Q Consensus 17 ~v~~~~~sp---~~~~la~~~~----dg~v~iwd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~-----~l~~g~~dg~i 81 (915)
.+.++.||. .+-+||.|+. ++.|.|-.+. +++.+..- -.|.-|++.+.|.|+.. +||+.+ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 578899984 2347888874 5667776543 44444322 13788999999999863 455544 479
Q ss_pred EEEECCCCcee----EEE-----ecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCc--eEEEEeecCCcceEEEE
Q 002502 82 RVYNYNTMDKV----KVF-----EAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVT 149 (915)
Q Consensus 82 ~vwd~~~~~~~----~~~-----~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~ 149 (915)
++|.+...+.. ..+ ..+..+++++.|+.-. ++|.++|-|-+..|||++++. .....+..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99988732211 111 2456789999999854 577789999999999999862 35667778999999999
Q ss_pred EecCCCCEEEEEECCCcEEEEECCCCCCceEEec---CCCCeeEEEEEeCCCcCEEEEEEC-CCeEEEEECCC-CcEEEE
Q 002502 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---HQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~ 224 (915)
|.....+.|++.+.||++++||++..+....+.. ...+...++|++...+ |+++-.. ...|.|.|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCCCcceeh
Confidence 9986678999999999999999998665444422 2456778888876544 6766544 46799999986 457889
Q ss_pred ecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCcee------eeeeccCCccEEEEEEec-CCCeEEEEecCC
Q 002502 225 LEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL------ENTLNYGLERVWAIGYMK-SSRRIVIGYDEG 293 (915)
Q Consensus 225 ~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~i~~s~-~~~~l~~g~~dg 293 (915)
+++|.+.|..++|.|.. ..|+++|.|..+.+||+...-. +..+. ..+.|..+.|++ .+..+++++...
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 99999999999999965 5899999999999999874322 22222 346799999996 467787776554
No 189
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.78 E-value=1.8e-12 Score=153.01 Aligned_cols=545 Identities=13% Similarity=0.160 Sum_probs=301.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCc---eeEEEE-----ecCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYS----GTVCIWNYQSQT---MAKSFE-----VTELPVRSAKFVARKQWVVAGADDMFIRV 83 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~d----g~v~iwd~~~~~---~~~~~~-----~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (915)
..+...+|.+....+.++... ..|.+....... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 367888888877655544432 234444433332 222232 23467999999999999999999999999
Q ss_pred E----ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---------------------ce-EEEE
Q 002502 84 Y----NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------WM-CTQI 137 (915)
Q Consensus 84 w----d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------~~-~~~~ 137 (915)
. +..+. .+.....-...|.+++||||+..|+..+.+|++.+.+-.=. |- ....
T Consensus 102 ~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 54442 23333334568999999999999999999999888752100 00 0000
Q ss_pred eec------------------------CCcceEEEEEecCCCCEEEEEEC---C---CcEEEEECCCCCCceEEecCCCC
Q 002502 138 FEG------------------------HSHYVMQVTFNPKDTNTFASASL---D---RTIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 138 ~~~------------------------~~~~i~~~~~~p~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|.| +...-..++|.. |+.+|++.+. . +.|+||+-. |....+...-.+-
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 000 222456788998 9999999875 2 579999964 5444333333333
Q ss_pred eeEEEEEeCCCcCEEEEEEC---CCeEEEEECCCCcEEEEec----CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 188 VNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLE----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
-.+++|-|.|+ +|++.-. ...|.+|. ++|-.-..|. .....|..+.|++++..|+....|. |.+|...+
T Consensus 259 e~~l~WrPsG~--lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 259 EGALSWRPSGN--LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred cCCccCCCCCC--EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 45789999997 5665543 35677777 4454433332 3456799999999999999987664 99999988
Q ss_pred ce--eeeeeccCC-ccEEEEEEecC-CCeEEEEecCCeEEEec----CCCcceeEEcCCCcEEEEeecceEEEEeeeccc
Q 002502 261 YR--LENTLNYGL-ERVWAIGYMKS-SRRIVIGYDEGTIMVKI----GREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (915)
Q Consensus 261 ~~--~~~~~~~~~-~~v~~i~~s~~-~~~l~~g~~dg~v~i~~----~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~ 332 (915)
+. +.+.+.... ..+..+.|+|. ...|.+.+.+|.+.... ....+...-...|.+...-...+.+..+....
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~- 413 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV- 413 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC-
Confidence 77 344444332 34455999996 45577777766665521 11010000011122222222222222211100
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeecccc-----------------------cC
Q 002502 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWRN-----------------------RS 388 (915)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~~-----------------------~~ 388 (915)
-+.+.....+. ....+..++|++++..+++. .+|.+.+|....... ..
T Consensus 414 -------VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 414 -------VPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred -------CCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 00011112222 23468899999998755555 489899997432210 01
Q ss_pred ccceeEEEEecCCcEEEEecC----CeEEEeccCcce-eeeeecCcccceeecCcEEEEeeCC--eEEEEeccCCcEEE-
Q 002502 389 FGSALEFVWSSDGEYAVRESS----SKIKIFSKNFQE-KRSVRPTFSAERIYGGTLLAMCSND--FICFYDWAECRLIR- 460 (915)
Q Consensus 389 ~~~~~~~~~s~dg~~l~~~~~----~~v~v~~~~~~~-~~~~~~~~s~~~i~~g~~La~~~~~--~i~~~d~~~~~~i~- 460 (915)
......++|..+..+++.... +.+.+++..... ...+......+ +..+.....+ ...++...+|+.+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 234578888877776555543 456666542211 11111111111 1112111111 11222233333331
Q ss_pred ----------EEeccccEEEE--cCCCC---EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeEeeeeeE
Q 002502 461 ----------RIDVTVKNLYW--ADSGD---LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (915)
Q Consensus 461 ----------~~~~~i~~v~~--s~dg~---~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (915)
.+...+..+.. ..+.. .++..++.+.+... -..+-..+
T Consensus 562 ~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n---------------------------~~~la~~~ 614 (928)
T PF04762_consen 562 SSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYAN---------------------------SRLLASNC 614 (928)
T ss_pred ecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEEC---------------------------CEEEecCC
Confidence 11111222211 12222 23333333333321 11234567
Q ss_pred EeeEEecCEEEEEccCCeEEEEECC-----------EE-----eEEEecccceEEEEEEeeCCEEEEEecCCceEEEEec
Q 002502 526 RTGLWVGDCFIYNNSSWRLNYCVGG-----------EV-----TTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (915)
Q Consensus 526 ~~~~w~~~~~i~~~~~~~l~~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~ 589 (915)
+|....+++++|+|.+..+.+.... .. ..+....+--.++...|+..++++.-..||+-...+.
T Consensus 615 tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR 694 (928)
T PF04762_consen 615 TSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPR 694 (928)
T ss_pred ceEEEEcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccH
Confidence 7788889999999997666666533 00 1133344445678888889999999999988776653
Q ss_pred chHH-HHHHHHHccCHHHH
Q 002502 590 LSLI-EYKTLVMRGDLERA 607 (915)
Q Consensus 590 ~~~~-~~~~~~~~~~~~~a 607 (915)
.-++ .-...+.++++-+|
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~A 713 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEA 713 (928)
T ss_pred hHHHHHHHHHHhhccHHHH
Confidence 2222 12233445555554
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.7e-18 Score=174.70 Aligned_cols=245 Identities=17% Similarity=0.261 Sum_probs=192.9
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002502 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
++..|...|+.+.|.|-...|++++.||.|.+|++.. -+++.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4556888999999999999999999999999999932 24578899999999999999999999999999999
Q ss_pred EEEECCCC---------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--CCCCeeEEE
Q 002502 124 KLWDWEKG---------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVD 192 (915)
Q Consensus 124 ~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~ 192 (915)
+.|++... ......+.||...++.+++++ ..+.|++++.||+++.|......+ .++.. ..+...+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99965421 244567889999999999999 778899999999999999876655 33322 222334555
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC-------ccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeee
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
+-..... ..++...-+.-.++++.....+..+... ...+..+.++|.+.+.+++..|+.|+++|..++.++.
T Consensus 447 ~~ss~~a-~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPA-HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhH-hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 4332211 2333333444445555555444444321 2347788999999999999999999999999999999
Q ss_pred eeccCCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 266 ~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
....|...++++++.|+|.+|++|+.||.+.+|.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhh
Confidence 9999999999999999999999999999999974
No 191
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.77 E-value=1.2e-16 Score=168.35 Aligned_cols=216 Identities=25% Similarity=0.296 Sum_probs=163.0
Q ss_pred EEec--CEEEEEccCCeEEEEEC---CEEeEEEecccceEEEEEEeeCC-EEEEEecCCceEEEEecchHHHHHHHHHcc
Q 002502 529 LWVG--DCFIYNNSSWRLNYCVG---GEVTTMFHLDRPMYLLGYLASQS-RVYLIDKEFNVMGYTLLLSLIEYKTLVMRG 602 (915)
Q Consensus 529 ~w~~--~~~i~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~ 602 (915)
.|++ |+++..+. +.++.+++ ++..+....+.. +.++...++ .-+++-....-+.|.++..+++|..++..|
T Consensus 382 qwvp~sdvivaqn~-dnl~iwyn~d~peqvt~~kikgd--v~~l~r~~~kteviv~e~takvayeld~~~iefgaaid~~ 458 (1636)
T KOG3616|consen 382 QWVPGSDVIVAQNG-DNLCIWYNIDAPEQVTMFKIKGD--VEALERDADKTEVIVMEGTAKVAYELDEGLIEFGAAIDDG 458 (1636)
T ss_pred eeccCcceEEecCC-CceEEEecCCcchhheeeEeccc--chhhhcCCCceeEEEeecceeEEEEecCcceecccccccC
Confidence 4876 77777665 56776663 333344444332 222222333 334444555677899999999999999888
Q ss_pred CHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCccceeeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 002502 603 DLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTG 682 (915)
Q Consensus 603 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~ 682 (915)
+++.|.. ||+...+-.+ ...+|..||++|+..|
T Consensus 459 df~ra~a---------------fles~~~~~d--------------------------------a~amw~~laelale~~ 491 (1636)
T KOG3616|consen 459 DFDRATA---------------FLESLEMGPD--------------------------------AEAMWIRLAELALEAG 491 (1636)
T ss_pred chHHHHH---------------HHHhhccCcc--------------------------------HHHHHHHHHHHHHHhc
Confidence 8887644 4444333222 2579999999999999
Q ss_pred ChhhHHHHHHHcCCcchhHHHHHhcCCHHHH------------HHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCC
Q 002502 683 KLEMAEGCMKQAMDLSGLLLLYSSLGDAEGI------------SKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 683 ~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
++-+|++||...+|..++.+|+-...-++.+ +-.+.++....++.+|..+++..++.++|+-||.+..
T Consensus 492 nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lh 571 (1636)
T KOG3616|consen 492 NLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELH 571 (1636)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999999998765544433 3467888888899999999999999999999999999
Q ss_pred CchHHHHHHHhcCCChHHHHHHHHHHhhhhcC--hhhhhhcCCCcc
Q 002502 751 RIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--PKAAESLADPEE 794 (915)
Q Consensus 751 ~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~--~~~a~~l~~~~~ 794 (915)
+|+||+.+|+..+++.+..+...|-++|+.++ .|+|+.-...++
T Consensus 572 kwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd 617 (1636)
T KOG3616|consen 572 KWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGD 617 (1636)
T ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCc
Confidence 99999999999999999999999999999876 466665554444
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.5e-15 Score=170.98 Aligned_cols=290 Identities=28% Similarity=0.474 Sum_probs=232.5
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEE
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~v 83 (915)
.....+..|...|.+++|+|++.++++++. ++.+++|+...+..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 344567889999999999999998888875 99999999998888889999999999999999998 4555589999999
Q ss_pred EECCCCceeE-EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 84 YNYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 84 wd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
||..++.... .+..|.... ...|+|++.++++++.|+.+++|+..........+..|...+.++.|+| ++..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEee
Confidence 9988888877 688888875 4489999988999999999999999876442334467889999999999 778888899
Q ss_pred CCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCCCcCEEEEE-ECCCeEEEEECCCCcEEEEecCCccCeEEEEEeC
Q 002502 163 LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 239 (915)
.|+.+.+|+..+........ .|...+..+.+ +.. ...++.+ ..|+.+.+|+............ ...+..+.+++
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 380 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSP 380 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCCceeEEecC-CceEEEEEECC
Confidence 99999999988877666655 67777899998 532 1245555 6789999999987773333332 22288899988
Q ss_pred CCCEEEE-EEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCC
Q 002502 240 ELPIIIT-GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 240 ~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
...+.. +..++.+.+|+................+....+++++..++.++.++.+.+|...
T Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 544444 6889999999998877666555443688899999999999999999999987433
No 193
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.76 E-value=2.2e-14 Score=160.88 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=171.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCe--EEEEECCC-Cc---eeEEEE--ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGT--VCIWNYQS-QT---MAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~--v~iwd~~~-~~---~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
|++.-.+...+|.-..++++...+. +.++.++. ++ ....+. ..+..|.++.|..++..++.+...|.|.+-|
T Consensus 17 ~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd 96 (1265)
T KOG1920|consen 17 GPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVD 96 (1265)
T ss_pred CCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEc
Confidence 4444455666666666666643222 33333322 22 111121 1335799999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC----C-----------------Cc-eEEEEeecC--
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE----K-----------------GW-MCTQIFEGH-- 141 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~----~-----------------~~-~~~~~~~~~-- 141 (915)
..+.... ....-.+.|.+++||||+..++..+..+++.+-+-. . || .....+.+.
T Consensus 97 ~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 97 PETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred cccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchh
Confidence 8875432 333346789999999999999999888888776431 0 00 000011110
Q ss_pred -------------------CcceEEEEEecCCCCEEEEEE-----CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCC
Q 002502 142 -------------------SHYVMQVTFNPKDTNTFASAS-----LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (915)
Q Consensus 142 -------------------~~~i~~~~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (915)
...=+++.|-- |+.+|++.. ..+.|++||.. +.....-....+.-.+++|-|.|
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG 253 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC
Confidence 11124588987 888998832 23789999976 44433333334445789999987
Q ss_pred CcCEEEEE---ECCCeEEEEECCCCcE----EEEecCCccCeEEEEEeCCCCEEEE---EEcCCeEEEEeCCCce--eee
Q 002502 198 DKPYLITG---SDDHTAKVWDYQTKSC----VQTLEGHTHNVSAVCFHPELPIIIT---GSEDGTVRIWHATTYR--LEN 265 (915)
Q Consensus 198 ~~~~l~~~---~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~~~l~~---~~~dg~v~iwd~~~~~--~~~ 265 (915)
. ++++. .+++.|.+|.-+ |-. ...+......+..++|+.++..|++ ......|++|.+.++. +.+
T Consensus 254 s--~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq 330 (1265)
T KOG1920|consen 254 S--LIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQ 330 (1265)
T ss_pred C--eEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEE
Confidence 6 56654 345679898843 332 2223333445899999999998887 4555569999988876 344
Q ss_pred eeccCCccEEEEEEecCC-CeEEEEecCCeEEE
Q 002502 266 TLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (915)
Q Consensus 266 ~~~~~~~~v~~i~~s~~~-~~l~~g~~dg~v~i 297 (915)
.+..+.... +.|+|.. ..+.+-..+|...+
T Consensus 331 ~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 331 ELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred EEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 444443333 7888853 34444446666555
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=152.03 Aligned_cols=308 Identities=16% Similarity=0.256 Sum_probs=202.6
Q ss_pred CCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002502 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~~~~~~ 92 (915)
-+.|..+.|..|.-+++++.+ ++.|.+|++...+-...+.....++.++.|||||+.|+.. .-+-.|.||.+.|.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999999988887655 8899999998888777888788899999999999766654 55889999999986544
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
. ++-....+..++|+|+|++.+.++.-.....+++. ..+.+...+...+-..+.+.|+| |++.+++ |
T Consensus 128 ~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laV---------w 196 (447)
T KOG4497|consen 128 L-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAV---------W 196 (447)
T ss_pred E-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEE---------e
Confidence 3 33233456889999999998887753221111111 11233333333444456677777 5655543 3
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-----------------------------
Q 002502 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC----------------------------- 221 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------- 221 (915)
|.--.-.+..+ ...-++..+.|+|.+. ++++|+.|+.+++.+--+.++
T Consensus 197 d~~Leykv~aY-e~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 197 DNVLEYKVYAY-ERGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred cchhhheeeee-eeccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 32111111111 1224566677777665 677777777766654211100
Q ss_pred -------------------------------EEEec------CCccCeEEEEEeCCCCEEEEEEc--CCeEEEEeCCCce
Q 002502 222 -------------------------------VQTLE------GHTHNVSAVCFHPELPIIITGSE--DGTVRIWHATTYR 262 (915)
Q Consensus 222 -------------------------------~~~~~------~~~~~v~~v~~~~~~~~l~~~~~--dg~v~iwd~~~~~ 262 (915)
+..++ .....+.-++|++|..++++-.. -+.+-+||+++.+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 01111 12234677999999988887643 3569999998777
Q ss_pred eeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCcee
Q 002502 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
+...+. ...+|....|.|....|++.+....+++|......++...
T Consensus 354 l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP--------------------------------- 399 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP--------------------------------- 399 (447)
T ss_pred hhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC---------------------------------
Confidence 655443 3478999999999999999998888888754443222221
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEE
Q 002502 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYII 378 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i 378 (915)
.....++.+.|..+|.+++.++...+.+
T Consensus 400 --------~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 400 --------KKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred --------CCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 1224567999999999999998766554
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=7.2e-16 Score=141.68 Aligned_cols=227 Identities=20% Similarity=0.287 Sum_probs=168.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.|.+-+|+|.+++|++|+.+|.|.+..+++. ..+..+++|.++|..++|+ ..+|++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3556689999999999999999999988632 2344557999999999998 345776664 99999988
Q ss_pred CCCce---EEEE----eecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC
Q 002502 129 EKGWM---CTQI----FEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG 196 (915)
Q Consensus 129 ~~~~~---~~~~----~~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (915)
+...+ +... ..-| -..|.++...| ..+.+++++.|+.++.||+.+++...++++|...|.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 64311 1111 1111 24578898999 5555666668999999999999999999999999999987332
Q ss_pred CCcCEEEEEECCCeEEEEECCCCcEEEEecCCc----------cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeee
Q 002502 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT----------HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.. .+++|+.||++++||.++++++..+.... ..|-+++. +..++++|+ ...+.+|+++..+...+
T Consensus 168 ~~--qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 168 NG--QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred Cc--ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEE
Confidence 22 49999999999999999999988775322 12444444 445777776 55799999999988888
Q ss_pred eccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 267 ~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+..+ .++..+.|..+ .+++++....+.-
T Consensus 243 fpip-a~v~~v~F~~d--~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 243 FPIP-ARVHLVDFVDD--CVLIGGEGNHVQS 270 (325)
T ss_pred Eecc-cceeEeeeecc--eEEEeccccceee
Confidence 8766 67888888654 4555555544444
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=151.74 Aligned_cols=243 Identities=16% Similarity=0.246 Sum_probs=193.8
Q ss_pred EEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.+.....+|+|.+|++|+..+|++..+..|.||.....+ ..++++.|...|++++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 344456799999999999999999999999999887554 57788899999999999999999999999999999998
Q ss_pred CCC--ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc----eEEecCCCCeeEEEEEeCCCcCEE
Q 002502 129 EKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 129 ~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
..+ +++...+..++...+++.|+| .++.|++|+..+.|.||-.....-- ..-..+...|.+++|+|++- ++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--Ll 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--ee
Confidence 433 445556677889999999999 8999999999999999987654321 12245677899999999886 79
Q ss_pred EEEECCCeEEEEECC-----C-------------CcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-e
Q 002502 203 ITGSDDHTAKVWDYQ-----T-------------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-L 263 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~ 263 (915)
++|+.|+..++|..- . |+.+..+....+.+..+.|+|+|..|+-.+.|+.+.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 999999999999642 1 22334444566789999999999999999999999999977654 4
Q ss_pred eeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 264 ~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+..+....-+..++.|-.+...+++|.+-+-+.+
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 5555555577888888877766666665454443
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=154.08 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=156.2
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCCceEEE-EeecCC-cce
Q 002502 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQ-IFEGHS-HYV 145 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-~~i 145 (915)
..+|++...|.|++||..+++.+..|++++..+..+.|.. ....+.+|+.||+|++||++...+..+ .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 345788999999999999997644333 334444 456
Q ss_pred EEEEEecCCCCEEEEEEC----CCcEEEEECCCCCC-ceE-EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC
Q 002502 146 MQVTFNPKDTNTFASASL----DRTIKIWNLGSPDP-NFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (915)
.+++.+- ..+.+++|+. +-.|.+||.+..+. +.. ...|...|++++|+|...+ +|++|+.||.|.+||+...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 6776664 5678888765 56799999998766 433 3579999999999998765 9999999999999998753
Q ss_pred c---EEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCceeeeeec
Q 002502 220 S---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 220 ~---~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
. .+...-.+...|.++.|+.++ +.|.+-+..+...+|++..+.....+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 223333477789999999887 457888889999999999887554443
No 198
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-17 Score=166.63 Aligned_cols=296 Identities=19% Similarity=0.263 Sum_probs=234.5
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE-ecCCCEEEEEEeCC--CCEEEEEeCCCe
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR--KQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--~~~l~~g~~dg~ 80 (915)
++.+..+|..|.+.|..+.|...|..|++|+.|..|.+||+.++.....+. +|...|....|.|. ...+++++.||+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 567788999999999999999999999999999999999999988877765 58888888889884 467899999999
Q ss_pred EEEEECC-CCce--eEEEecCCCCEEEEEEcCCCCE-EEEEEcCCeEEEEECCCCceEEE--EeecCCc---ceEEEEEe
Q 002502 81 IRVYNYN-TMDK--VKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSH---YVMQVTFN 151 (915)
Q Consensus 81 i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~---~i~~~~~~ 151 (915)
+++=.+. ++.. .+.+..|.++|.-++.-|+.++ |.+++.|+.+.-.|++.+..... .-..+.. ....++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 9987654 3322 3456689999999999998764 78999999999999987622111 1122333 57889999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCC------ceEE------ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSPDP------NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT- 218 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 218 (915)
|.+.+.|++++.|..+++||.+.-.. +..+ ......|+|++|+.++.. +++...|-.|+++.-..
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccc
Confidence 98888999999999999999864221 1222 234457899999987774 77777788899995432
Q ss_pred -C----------cEEE-EecCCcc--CeEEEEE-eCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCC
Q 002502 219 -K----------SCVQ-TLEGHTH--NVSAVCF-HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 219 -~----------~~~~-~~~~~~~--~v~~v~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~ 283 (915)
| ..+. .+++|.. .|..+-| -|...++++|+.-|.|.||+-.+++.+..+.+...-|.|+.-+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 1222 2667754 3666665 5778899999999999999999999999888887889999999999
Q ss_pred CeEEEEecCCeEEEecCC
Q 002502 284 RRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 284 ~~l~~g~~dg~v~i~~~~ 301 (915)
..||+.+-|.-|+||...
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 999999999999999653
No 199
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.1e-14 Score=151.51 Aligned_cols=367 Identities=15% Similarity=0.200 Sum_probs=254.1
Q ss_pred CchhhhhhcccCCCCEEEEEEcCC------------CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC--
Q 002502 3 LRLEIKRKLAQRSERVKSVDLHPS------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-- 68 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-- 68 (915)
..++....+..|...|+.+.|.|- ...||++...|.|.+||...+..+..+..|..++..+.|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 356777888999999999999872 235778888999999999999988899999999999999873
Q ss_pred -C-CEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC------ceEEEEee
Q 002502 69 -K-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFE 139 (915)
Q Consensus 69 -~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 139 (915)
. ..|++-.....|.+||..+|++............|+.+.| |.+.+..-+..|.+.+-+.-.. .+..++..
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4566667778999999999999998887677788899998 4456666666777777654321 12223322
Q ss_pred cCCc-------------------------ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEE
Q 002502 140 GHSH-------------------------YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF 194 (915)
Q Consensus 140 ~~~~-------------------------~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 194 (915)
.|.. ....++|+|.-.+.++. ...+.+.++|++-..++....-..+.+.-+.|.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 3222 12245677844444444 457889999998888887777777888889999
Q ss_pred eCCCcCEEEEEECCCeEEEEECCC----------------CcEEEE----------------------------------
Q 002502 195 TGGDKPYLITGSDDHTAKVWDYQT----------------KSCVQT---------------------------------- 224 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~---------------------------------- 224 (915)
|++++..|++...||.+.+|-.+. +..+..
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 999988999999999999996432 111100
Q ss_pred -e----------------------------------------cCCccCeEEEEEeC-----------CC-------CEEE
Q 002502 225 -L----------------------------------------EGHTHNVSAVCFHP-----------EL-------PIII 245 (915)
Q Consensus 225 -~----------------------------------------~~~~~~v~~v~~~~-----------~~-------~~l~ 245 (915)
+ .+|....++....| .+ ++++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0 01222222222221 11 3688
Q ss_pred EEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEE
Q 002502 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTV 325 (915)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~ 325 (915)
.|...|+|.++|+.++..-..+..|...|.++.|.....++-.++..-.-. .| ...+++.+.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~--------------sg----~vrN~l~vt 503 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSA--------------SG----GVRNDLVVT 503 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecccccc--------------cc----ceeeeEEEE
Confidence 999999999999999999999999999999999988776665554321000 00 011233333
Q ss_pred EeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEe
Q 002502 326 NIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWS 398 (915)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s 398 (915)
. +.+|........ .+..+.+++.+..|..|++|++.- +.-+.+|+....+ .+.+-.++.+.|+
T Consensus 504 d---------LrtGlsk~fR~l-~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 504 D---------LRTGLSKRFRGL-QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred E---------cccccccccccC-CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 3 344433322111 144566889999999999999987 7778888775442 3444557888888
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=1.9e-16 Score=172.51 Aligned_cols=243 Identities=17% Similarity=0.248 Sum_probs=186.1
Q ss_pred CCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCce--eEE----EEecCCCEEEEEEeCCCCE--EEEEeCCCeEEEEE
Q 002502 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTM--AKS----FEVTELPVRSAKFVARKQW--VVAGADDMFIRVYN 85 (915)
Q Consensus 15 ~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~s~~~~~--l~~g~~dg~i~vwd 85 (915)
...|+|+.|+|..+ ++|.|+++|.|.+||++.+.. ... ...|..+|..+.|..+..- +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999655 667778899999999987755 222 2348899999999875544 99999999999998
Q ss_pred CCCCcee-E-----EEe------cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCC---c----eEEEEeecCCcce
Q 002502 86 YNTMDKV-K-----VFE------AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKG---W----MCTQIFEGHSHYV 145 (915)
Q Consensus 86 ~~~~~~~-~-----~~~------~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~---~----~~~~~~~~~~~~i 145 (915)
++..... . ... .....+++++|.+..+ .+++|++.|.|..-+.... . +....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7643221 0 011 1233688999998654 6889999999887443322 1 1233556788999
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC--cEE
Q 002502 146 MQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCV 222 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~ 222 (915)
.++.++|-....|.+++ |.++++|... ...++..+..+...|++++|||.... +++++..+|.+.+||+... .++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhccccCCc
Confidence 99999996566666666 9999999987 66777778878888999999998654 8888999999999999653 455
Q ss_pred EEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 223 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
.+...+....+.+.|+++|+.|++|...|.+++|++.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5555556667788899999999999999999999985
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3.1e-16 Score=154.08 Aligned_cols=226 Identities=14% Similarity=0.229 Sum_probs=169.3
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCe
Q 002502 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (915)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+|.- +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 5567899999999999998765 4567788999999999999964 67889999999
Q ss_pred EEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCc-ceEEEEEecCCCCEEE
Q 002502 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFA 159 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~l~ 159 (915)
|.+||+.||+.+.++. |.+.|.++.|+.+|.+|++++.|..|+|||.+++ .+...-.+|.+ .-..+.|-. ++..+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~-~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA-SGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec-cCceee
Confidence 9999999999988888 9999999999999999999999999999999998 55555456643 344555665 666555
Q ss_pred EEE---CCCcEEEEECCCCCCc---eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-EEEecC--Ccc
Q 002502 160 SAS---LDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG--HTH 230 (915)
Q Consensus 160 ~~~---~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--~~~ 230 (915)
+|- .++++-+||..+-... ..+. ...+|.---|.++.. .+.++|-.|+.|+-|.+.+..+ ++.+.. ...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~-ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e 310 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS-IVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE 310 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC-EEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence 543 3678999997664332 2222 334454444555443 3566777899999999876553 222221 223
Q ss_pred CeEEEEEeCC
Q 002502 231 NVSAVCFHPE 240 (915)
Q Consensus 231 ~v~~v~~~~~ 240 (915)
+=..+.|-|.
T Consensus 311 pQRG~g~mPK 320 (472)
T KOG0303|consen 311 PQRGMGFMPK 320 (472)
T ss_pred cccccccccc
Confidence 3445666664
No 202
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=1.2e-15 Score=149.92 Aligned_cols=203 Identities=22% Similarity=0.292 Sum_probs=165.0
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCC------ceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 93 KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
..+.+|.++|..++|+|. ...|++||.|.+|.||++..+ ......+.+|...|..+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 345689999999999995 457899999999999998754 2446678899999999999998889999999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEE
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l 244 (915)
+|.+|++.+++...++. |...|.+++|+.+|. ++++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999888887 999999999999998 799999999999999999999988877765 34567788888855
Q ss_pred EEEE---cCCeEEEEeCCCce---eeeeeccCCccEEEEEEecCCCeEEE-EecCCeEEEec
Q 002502 245 ITGS---EDGTVRIWHATTYR---LENTLNYGLERVWAIGYMKSSRRIVI-GYDEGTIMVKI 299 (915)
Q Consensus 245 ~~~~---~dg~v~iwd~~~~~---~~~~~~~~~~~v~~i~~s~~~~~l~~-g~~dg~v~i~~ 299 (915)
-+|- .+..+-+||..+.+ ...++... ..|.---|.++.+.+.. |-.|+.|+.+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4443 46789999976554 33444444 44555667888776654 56688888753
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.71 E-value=7.5e-16 Score=145.37 Aligned_cols=239 Identities=17% Similarity=0.225 Sum_probs=182.5
Q ss_pred ccCCCCEEEEEEcCCCC-----EEEEEEcCCeEEEEECCCC--cee--EEE-----EecCCCEEEEEEeC-CCCEEEEEe
Q 002502 12 AQRSERVKSVDLHPSEP-----WILASLYSGTVCIWNYQSQ--TMA--KSF-----EVTELPVRSAKFVA-RKQWVVAGA 76 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~-----~la~~~~dg~v~iwd~~~~--~~~--~~~-----~~~~~~v~~~~~s~-~~~~l~~g~ 76 (915)
..|.-+++.+.|.|+.. +||+.+ ..+++|.+... +.. ..+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999863 555553 47999998632 111 111 12567899999987 567888889
Q ss_pred CCCeEEEEECCCCce---eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecC--CcceEEEEE
Q 002502 77 DDMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTF 150 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~ 150 (915)
-|-+..|||++++.. ...+-+|...|..++|...+ +.+++.+.||.++++|++......-+++.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998733 45567899999999999855 468899999999999999764444444432 467889999
Q ss_pred ecCCCCEEEEEECC-CcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc------EE
Q 002502 151 NPKDTNTFASASLD-RTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------CV 222 (915)
Q Consensus 151 ~p~~~~~l~~~~~d-g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~ 222 (915)
++.+.+++++-..| ..|.|.|++.+ .++..+..|...|+.++|.|.... .|+++++|..+.+||++..- ++
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPi 329 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPI 329 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCch
Confidence 99999999987665 46999999875 467788999999999999998765 89999999999999997532 22
Q ss_pred EEecCCccCeEEEEEeCC-CCEEEEEEcCCeEEE
Q 002502 223 QTLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRI 255 (915)
Q Consensus 223 ~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~v~i 255 (915)
..+. ..+.|..+.|++. ...|+.+. ++++.+
T Consensus 330 lay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 330 LAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 2333 4667999999974 45677665 445544
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.1e-17 Score=164.36 Aligned_cols=271 Identities=16% Similarity=0.244 Sum_probs=222.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 95 (915)
-....+.++.+|.+|+.|+..|.|..+|+.++++...+... ..|+.+.|-.+.+++|++. ...+.|||- .|..++.+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh
Confidence 34678899999999999999999999999999998888744 4689999999999888875 467999994 57778888
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002502 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
+.|. .|..+.|-|..-+|++++..|.++.-|+.+| .++..+....+.+..++-+| -+..+-+|..+|+|.+|...+.
T Consensus 207 k~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 207 KRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhcC-chhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCc
Confidence 7654 6889999999888889999999999999999 56666666678888999999 7889999999999999999999
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEE
Q 002502 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i 255 (915)
+++..+..|.++|.++++.++|. |+++.+.|..++|||+++-..+.++.. ..+...+++|..| +++.+....|.|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 99999999999999999999888 999999999999999998777776664 5567888898876 334445558999
Q ss_pred EeC-CCce--eeeee--ccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 256 WHA-TTYR--LENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 256 wd~-~~~~--~~~~~--~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
|.- -.+. ....+ ..-.+.|..+.|.|-...|-+|...|.-.+
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 952 1211 11111 111358999999999999999988887665
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.3e-15 Score=147.36 Aligned_cols=245 Identities=13% Similarity=0.164 Sum_probs=181.5
Q ss_pred EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC------CCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeE
Q 002502 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN------TMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (915)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~------~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i 123 (915)
+.+.+|.+.|.++.|+.++++|++|++|..+++|++. +.+++.... .|.+.|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3455799999999999999999999999999999975 335555554 456899999999999999999999999
Q ss_pred EEEECCCCceEEEEee--cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-Cc--eEEecCCCCeeEEEEEeCCC
Q 002502 124 KLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PN--FTLDAHQKGVNCVDYFTGGD 198 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~--~~~~~~~~~v~~~~~~~~~~ 198 (915)
..-|+++. ..+.++. ...+.|..+..+| ..+.|++.+.++.|.+||.+... +. ..+.........+-|+|...
T Consensus 130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETK-QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccc-eeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987 3344433 2235899999999 68899999999999999998654 22 22233455677888988765
Q ss_pred cCEEEEEECCCeEEEEECCCCcE-EEE------ecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceee-eeeccC
Q 002502 199 KPYLITGSDDHTAKVWDYQTKSC-VQT------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYG 270 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~ 270 (915)
. +|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+++--....-.+||+.+.++. ..+...
T Consensus 208 ~-Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 208 A-LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred e-eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 4 888899999999999885432 211 1111122356789999998887766666667887765432 222211
Q ss_pred ------CccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 271 ------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 271 ------~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
...+.+++|..+- .+++|+++-.+.+|.
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 2346678887664 489999998898883
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.5e-14 Score=140.21 Aligned_cols=233 Identities=15% Similarity=0.212 Sum_probs=176.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC--CeEEEEECCCCceEE
Q 002502 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCT 135 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 135 (915)
..+..+.|+.+...|.+|+.|| .++|+..............-.|.-+-|+.+ +++..+.+ ..+++++.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 4567777999999999999988 678877655443333333445777778754 56655554 348999988764443
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC-CCCeeEEEEEeCCCcCEEEEEE--CCCeEE
Q 002502 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGS--DDHTAK 212 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~--~dg~i~ 212 (915)
... ....|.++.++. +.|+++-. ..|+|||+++.+.+.++... ..+-..++++++..+.|++.-+ ..|.|.
T Consensus 83 e~~--fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIF--FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEe--cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 333 345689999974 45555554 44999999999888777544 2222244555555444777543 468999
Q ss_pred EEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCe-EEEEeCCCceeeeeeccCC--ccEEEEEEecCCCeEEEE
Q 002502 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~s~~~~~l~~g 289 (915)
+||..+-+++..+..|.+++.+++|+++|.+||++|..|+ ||++++.+|+.+.++..+. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999987 7999999999999887653 468899999999999999
Q ss_pred ecCCeEEEec
Q 002502 290 YDEGTIMVKI 299 (915)
Q Consensus 290 ~~dg~v~i~~ 299 (915)
++.++|+++.
T Consensus 237 S~TeTVHiFK 246 (391)
T KOG2110|consen 237 SNTETVHIFK 246 (391)
T ss_pred cCCCeEEEEE
Confidence 9999999964
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.1e-15 Score=146.57 Aligned_cols=234 Identities=16% Similarity=0.165 Sum_probs=185.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc---eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CC
Q 002502 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NT 88 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~~ 88 (915)
.-..+|+|.+|++|+..+|++..+..|.||...... ..++++.|+..|+++.|+|..+.|++++.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999876654 66788889999999999999999999999999999998 33
Q ss_pred C--ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---ceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 89 M--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 89 ~--~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
+ ++...+..++...+++.|+|.++.+++|+....|.||-.+.. +....+-+.+.+.|.++.|+| ++-+++.|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence 3 344556678899999999999999999999999999987754 223445556788899999999 8889999999
Q ss_pred CCcEEEEECC-----C-------------CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc-EEEE
Q 002502 164 DRTIKIWNLG-----S-------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQT 224 (915)
Q Consensus 164 dg~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 224 (915)
|+..++|..- . +..+..+....+.+..+.|+|+|. .|+-.+.|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeecCCCchhccc
Confidence 9999999741 1 112233345677899999999998 68889999999999976554 3444
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcC
Q 002502 225 LEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 225 ~~~~~~~v~~v~~~~~~~~l~~~~~d 250 (915)
.....-+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 443446777777776644 4444444
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=2.5e-14 Score=153.78 Aligned_cols=259 Identities=13% Similarity=0.181 Sum_probs=173.8
Q ss_pred EEcCCeEEEEECCC-Cc--eeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC-CCce--eEEEecCCCCEEEE
Q 002502 33 SLYSGTVCIWNYQS-QT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN-TMDK--VKVFEAHTDYIRCV 105 (915)
Q Consensus 33 ~~~dg~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l 105 (915)
...++.|.+|++.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ..+....+
T Consensus 8 ~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i 85 (330)
T PRK11028 8 SPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI 85 (330)
T ss_pred cCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence 35689999999964 43 444454 345677899999999987765 47889999986 3332 22222 33456789
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCce---EEEEeecCCcceEEEEEecCCCCEEEE-EECCCcEEEEECCCCCCce-
Q 002502 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRTIKIWNLGSPDPNF- 179 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~~~~~- 179 (915)
+|+|++++|++++. ++.|.+|++++... ....+. +.....+++++| +++++++ ...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 99999999888764 78999999974211 222222 223456788999 6766654 4556999999997633221
Q ss_pred ----EEe-cCCCCeeEEEEEeCCCcCEEEEEEC-CCeEEEEECCC--Cc--EEEEecCCc------cCeEEEEEeCCCCE
Q 002502 180 ----TLD-AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT--KS--CVQTLEGHT------HNVSAVCFHPELPI 243 (915)
Q Consensus 180 ----~~~-~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~~------~~v~~v~~~~~~~~ 243 (915)
... ........+.|+|+++ +++++.. ++.|.+|++.. ++ .+..+.... .....+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 1234467899999887 6766655 89999999973 32 233332211 12346889999999
Q ss_pred EEEEEc-CCeEEEEeCCCce----eeeeeccCCccEEEEEEecCCCeEEEEec-CCeEEEe
Q 002502 244 IITGSE-DGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~v~~i~~s~~~~~l~~g~~-dg~v~i~ 298 (915)
++++.. ++.|.+|++.... .+...... ...+.+.++|+|++|+++.. ++.|.+|
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 998854 6899999985432 22322222 34567999999999998775 7788775
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.2e-16 Score=159.12 Aligned_cols=244 Identities=17% Similarity=0.298 Sum_probs=177.0
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE-ecCCCEEEEEEeC--CCCEEEEEeCCCe
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMF 80 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~g~~dg~ 80 (915)
++.+...|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +...+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 456778899999999999999999999999999999999998888877765 6999999999999 4567889999999
Q ss_pred EEEEECCCC----------ceeEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEeec---------
Q 002502 81 IRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEG--------- 140 (915)
Q Consensus 81 i~vwd~~~~----------~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------- 140 (915)
|+++|+... .....+..|.+.|..|+..|++ ..+.+++.||+|+-+|++....+......
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999742 2344556899999999999999 56889999999999999874333222111
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-----ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-----DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.--...|+..+|.+..+|++|+.|-..++||.+...+...- ........|+.+...+. + ...+|.+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h---l--kn~~gn~---- 269 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH---L--KNSQGNL---- 269 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc---c--cCccccc----
Confidence 11346789999999999999999999999996432221110 11122233444332222 1 1111111
Q ss_pred CCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeee
Q 002502 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
.. ....++-+.|+|+|.-|++.-..-.|+++|+..++....
T Consensus 270 ------~~----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 270 ------DR----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ------cc----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 00 112356789999998766655555899999987775443
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.9e-15 Score=165.86 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=166.4
Q ss_pred CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002502 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
+..|.|||..... .+.+..+...+.+..|+|||++|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999976554 56677788889999999999999987653 4799999988764322 21222344689999999
Q ss_pred EEEEEE-cCCeEEEE--ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCe
Q 002502 113 YVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 113 ~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
.|+.++ .+|.+.|| |+.++ .. ..+..+...+.+..|+| ++..++.++ .+|...+|++...........+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~-~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGG-TP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCC-Ce-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 888765 57765555 66665 33 33445666788999999 777666554 578888887643222222223333
Q ss_pred eEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC--CCceeeee
Q 002502 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA--TTYRLENT 266 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~ 266 (915)
.+..|+|+++ +++..+.++ +.+||+.+++........ ....+.|+|+|++|+.++.+|.+.+|.+ .+|+....
T Consensus 336 ~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 4578999988 677766654 566999888754333222 3356789999999999999998888775 35778888
Q ss_pred eccCCccEEEEEEecC
Q 002502 267 LNYGLERVWAIGYMKS 282 (915)
Q Consensus 267 ~~~~~~~v~~i~~s~~ 282 (915)
+..+.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 8877778889999985
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2e-14 Score=140.07 Aligned_cols=253 Identities=11% Similarity=0.110 Sum_probs=164.8
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC----
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM---- 89 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~~~---- 89 (915)
..+..++||+.-..+|++..|-.|+|||-.. +....++. ....|+|++|-|.+ +.|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 4588999999888899999999999999555 55555553 45689999999975 456666664 5999976421
Q ss_pred ce----------eEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 90 DK----------VKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 ~~----------~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.. +....+| .+|++|.|++||..+++++. |..|.|||.+++ ..........+.+.-+.|+| |+..|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP-dgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP-DGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC-CCCEE
Confidence 11 1112244 58999999999999998875 578999999998 44444444556788999999 99999
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEe
Q 002502 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~ 238 (915)
++++-|+..++|...............+.|...+|+|.|.. +|++.+... ++|.+.....-..+.+ ...+..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf-LLf~~sgsp--~lysl~f~~~~~~~~~-~~~~k~---- 325 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF-LLFACSGSP--RLYSLTFDGEDSVFLR-PQSIKR---- 325 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCE-EEEEEcCCc--eEEEEeecCCCccccC-ccccee----
Confidence 99999999999965443333333334558999999999984 444444333 3333321111011110 111111
Q ss_pred CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCe
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~ 294 (915)
..-+-|+..-....--..-.+.+.+++|.|.|.+||+....+.
T Consensus 326 -------------~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 326 -------------VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred -------------eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 2222222210000000011356789999999999998776554
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.7e-13 Score=134.46 Aligned_cols=236 Identities=12% Similarity=0.177 Sum_probs=178.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCce
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDK 91 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~vwd~~~~~~ 91 (915)
....+..+.|+.+...|.+|+.+| -++|+................|.-+-|+ ..++|..+.+ ..+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 445678888999999999999888 6788876654422222222334445554 4456655543 4699999988777
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee---cCCcceEEEEEecCCCCEEEEE--ECCCc
Q 002502 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFNPKDTNTFASA--SLDRT 166 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~~~--~~dg~ 166 (915)
+..+. -...|.++.++. ++|+++-.+ .|+|||+++. ++..++. .+...+.++.+++ .+.+++.- ...|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc-eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCce
Confidence 77665 356799999975 467777765 4999999988 4444443 2444566666665 45566653 23689
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCe-EEEEECCCCcEEEEecCC--ccCeEEEEEeCCCCE
Q 002502 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPI 243 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~v~~~~~~~~ 243 (915)
|.+||..+-++...+..|++.+.+++|+++|. +|++++..|+ ||++.+.+|+.+..|+.. ...|.+++|+|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999999999999999999998 8999999887 789999999999998743 345889999999999
Q ss_pred EEEEEcCCeEEEEeCCC
Q 002502 244 IITGSEDGTVRIWHATT 260 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~ 260 (915)
|++.|..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998753
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=6.6e-15 Score=161.75 Aligned_cols=287 Identities=15% Similarity=0.176 Sum_probs=200.5
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC---CCCEEEEEEcC--CCCEEEEEEcCCeEEEEECCCC--
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH---TDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKG-- 131 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~--~~~~l~~~~~dg~i~iwd~~~~-- 131 (915)
+-..+.|+|=...++++...-.|+|||++.++....|..+ ...|+.+.+-. |...+++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 5677889998899999988889999999999988877643 34688888765 3457899999999999964321
Q ss_pred --ceEEEEeec-------CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcCE
Q 002502 132 --WMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 132 --~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 201 (915)
.+++.-+.+ ..+.-.-+.|.. ....|++++.-+.|+|||.........+. +....++++.-+... +..
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~ 1223 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNI 1223 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-Cce
Confidence 122222111 111124566877 44455555567899999998766555443 234455666544433 348
Q ss_pred EEEEECCCeEEEEECCCCc---EEEEecCCccC--eEEEEEeCCCC-EEEEEEcCCeEEEEeCCCceeeee--eccC---
Q 002502 202 LITGSDDHTAKVWDYQTKS---CVQTLEGHTHN--VSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENT--LNYG--- 270 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~v~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~--- 270 (915)
+++|..||.|++||.+... .+...+.|... |..+.+.++|- .|++|+.+|.|++||++....... +..+
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999988643 46667778777 99999999775 499999999999999987432222 2221
Q ss_pred CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecC
Q 002502 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
.+.++++..++....+|+|+. +.+.||......+..+..++.. ++
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F----------------------------------~~ 1348 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF----------------------------------MG 1348 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc----------------------------------cc
Confidence 135899999999999999998 8888875444433333221111 12
Q ss_pred CcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002502 351 TCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (915)
.....+.+++|+|-.-.+|+|. |+.+.||...
T Consensus 1349 q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1349 QRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred CcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 3334557899999888888887 7788888544
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.5e-13 Score=132.22 Aligned_cols=235 Identities=15% Similarity=0.261 Sum_probs=167.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEE-EEEcC------CeEEEEECC
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVL-SSSDD------MLIKLWDWE 129 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~-~~~~d------g~i~iwd~~ 129 (915)
...+++|+.|...+++|.++| .+||+.+..+....-..+.+. +.-|-|- .++|+ +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998887 899998764433222222222 2223332 33444 44433 479999954
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC-CCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EEC
Q 002502 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD 207 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~ 207 (915)
.. .+...+. ...+|.++.+.+ ..+++.- .+.|.+|... +.+.+..+.....+---++..|.....+|+. |..
T Consensus 84 k~-~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 44 4444443 457799999975 4555543 6789999987 4555555543332222344455544435554 445
Q ss_pred CCeEEEEECCCCcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCCe-EEEEeCCCceeeeeeccCC--ccEEEEEEecC
Q 002502 208 DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~s~~ 282 (915)
-|.|+|-|+...+. ...+..|...|.|++.+-+|..+|++|..|+ |||||..+|..+.++..+. ..|.+++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 69999999986554 5778899999999999999999999999998 8999999999999987653 46999999999
Q ss_pred CCeEEEEecCCeEEEecCCC
Q 002502 283 SRRIVIGYDEGTIMVKIGRE 302 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~~~~ 302 (915)
+.+||++++.|++.++-.++
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999975443
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.4e-13 Score=130.76 Aligned_cols=237 Identities=15% Similarity=0.247 Sum_probs=169.6
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCC------CeEEEEECCC
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADD------MFIRVYNYNT 88 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~d------g~i~vwd~~~ 88 (915)
....+++|+.|...+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+ +|+.+ +.|.|||=..
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 3456699999999999998776 99999876433222222222222222222445555 34332 4799999666
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCC--cceEEEEEecCCCCEEEE-EECCC
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFAS-ASLDR 165 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~-~~~dg 165 (915)
.+++..+. -..+|.++.+.++ +|++.- .+.|+||...+.-+....+.... ..+++++-+. +...|+. |-.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccc
Confidence 66777766 4678999999876 466555 46899999986544455444332 2344433322 2334443 44568
Q ss_pred cEEEEECCCCCC--ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCe-EEEEECCCCcEEEEecC--CccCeEEEEEeCC
Q 002502 166 TIKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEG--HTHNVSAVCFHPE 240 (915)
Q Consensus 166 ~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~ 240 (915)
.|.+-|+...+. ...+..|...|.|++.+..|. .+++++..|+ |+|||..+|+.+..++. ....|.+++|||+
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 999999987665 478899999999999999888 7999999887 79999999999998874 3456999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCC
Q 002502 241 LPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~ 260 (915)
+.+|+++|..|+|+|+.+..
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999998764
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.8e-13 Score=147.03 Aligned_cols=266 Identities=12% Similarity=0.179 Sum_probs=168.2
Q ss_pred EEeCCCeEEEEECCC-Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCC-Cce-EEEEeecCCcceEE
Q 002502 74 AGADDMFIRVYNYNT-MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEK-GWM-CTQIFEGHSHYVMQ 147 (915)
Q Consensus 74 ~g~~dg~i~vwd~~~-~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~-~~~-~~~~~~~~~~~i~~ 147 (915)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. +.. ..... ........
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceE
Confidence 336689999999964 33 344444 345678899999999987765 478899999873 321 11111 22334678
Q ss_pred EEEecCCCCEEEEEE-CCCcEEEEECCCCC-C---ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE
Q 002502 148 VTFNPKDTNTFASAS-LDRTIKIWNLGSPD-P---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
+.++| +++.+++++ .++.|.+|++.... . ...+. +.....+++++|+++. ++++...++.|.+||+.+...+
T Consensus 85 i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 85 ISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCcc
Confidence 99999 777777765 48899999996432 1 22222 2344677889998863 3355556799999999763322
Q ss_pred E-------EecCCccCeEEEEEeCCCCEEEEEEc-CCeEEEEeCCC--ce--eeeeeccC------CccEEEEEEecCCC
Q 002502 223 Q-------TLEGHTHNVSAVCFHPELPIIITGSE-DGTVRIWHATT--YR--LENTLNYG------LERVWAIGYMKSSR 284 (915)
Q Consensus 223 ~-------~~~~~~~~v~~v~~~~~~~~l~~~~~-dg~v~iwd~~~--~~--~~~~~~~~------~~~v~~i~~s~~~~ 284 (915)
. ... .......+.|+|+|++++++.. ++.|.+|++.. ++ .+..+... ......+.++|+++
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 111 2234578999999999988876 89999999873 32 33333221 11223588999999
Q ss_pred eEEEEec-CCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002502 285 RIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (915)
Q Consensus 285 ~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (915)
+++++.. ++.|.+|. ++.++..+ ... . ... ....+..+.++|
T Consensus 241 ~lyv~~~~~~~I~v~~--------i~~~~~~~-------~~~-------------------~--~~~-~~~~p~~~~~~~ 283 (330)
T PRK11028 241 HLYACDRTASLISVFS--------VSEDGSVL-------SFE-------------------G--HQP-TETQPRGFNIDH 283 (330)
T ss_pred EEEEecCCCCeEEEEE--------EeCCCCeE-------EEe-------------------E--EEe-ccccCCceEECC
Confidence 9888754 56666541 11111100 000 0 000 012456789999
Q ss_pred CCCEEEEEc--CCcEEEEEee
Q 002502 364 NGRFVVVCG--DGEYIIYTAL 382 (915)
Q Consensus 364 ~g~~lav~~--~~~~~i~~~~ 382 (915)
+|++|++++ ++.+.+|...
T Consensus 284 dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEc
Confidence 999988876 6778887653
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.64 E-value=3.9e-13 Score=143.41 Aligned_cols=288 Identities=15% Similarity=0.181 Sum_probs=187.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNY 86 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~vwd~ 86 (915)
...+......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||++++++. ..+.+.++|.
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 34444443334557899999999999999999999999999999998654 468899999999999876 5899999999
Q ss_pred CCCceeEEEecC-------CCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 87 NTMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 87 ~~~~~~~~~~~~-------~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
++.+.++.+... ..++..+..+|..+.+++.-. .+.|.+.|......................|+| +++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~ 186 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYF 186 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-cccee
Confidence 999998887632 346788888998886666555 488888887765344333334455677899999 77776
Q ss_pred EEE-ECCCcEEEEECCCCCCceEEec----CCCCee-------EEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec
Q 002502 159 ASA-SLDRTIKIWNLGSPDPNFTLDA----HQKGVN-------CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 159 ~~~-~~dg~i~i~d~~~~~~~~~~~~----~~~~v~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
+++ ..+..|.++|..+++....+.. |..++. ...|...+.....++.-....+.+||..+.+.++.+.
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~ 266 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP 266 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE
T ss_pred eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE
Confidence 664 5567899999988766554432 222222 2234433333233333334466788989999999999
Q ss_pred CCccCeEEEEEeCCCCEEEEE----EcCCeEEEEeCCCceeeeeeccCC-ccEEEEEEecCCCeEEEEecC--CeEEEe
Q 002502 227 GHTHNVSAVCFHPELPIIITG----SEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDE--GTIMVK 298 (915)
Q Consensus 227 ~~~~~v~~v~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~g~~d--g~v~i~ 298 (915)
....+ ..+..||+++++.+. ...+.|.++|..+.+...++.... .++..+.|+++|+.+.++..+ |.|.++
T Consensus 267 ~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 267 TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp -SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 77666 788899999999987 345789999999998887776442 358999999999977664433 346653
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.7e-15 Score=161.64 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=158.5
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-CCCeEEE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~v 83 (915)
.+.+..|...+.+++|||||++|+.++.+ ..|++||+.+++... +....+...+++|+|||++|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34567788899999999999999987653 369999998875432 222333345789999999998765 5776555
Q ss_pred --EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 84 --YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 --wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
||+.+++ ...+..+...+....|+|+|+.|+.++ .+|...||+++........+ .+.. .+..|+| +++.++.
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVM 349 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEE
Confidence 4666655 445556677788999999999877655 56788888765321222222 3333 4578999 8888888
Q ss_pred EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEEC--CCCcEEEEecCCccCeEEEEEe
Q 002502 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFH 238 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~v~~~ 238 (915)
.+.++ +.+||+.+++....... .....+.|+|++. +++.++.++.+.+|.+ .+|..++.+..|.+.+...+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 77754 66699988764432222 2335678999988 7888888888887775 3588888888888888999999
Q ss_pred CC
Q 002502 239 PE 240 (915)
Q Consensus 239 ~~ 240 (915)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=4.7e-16 Score=166.33 Aligned_cols=236 Identities=22% Similarity=0.366 Sum_probs=185.9
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
.++.+.+|-..|.|+.|...|.++++|++|..++||...++.+.....+|.+.|+.++.+.++.+++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 44556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE----Ee-cCCCCeeEEEEEeCCCcCEEE
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----LD-AHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~~~l~ 203 (915)
..+ .++.++.+|++.|++++|+| +.+.+.||++++||.+- .+... +. .....+.++.+...+. -++
T Consensus 262 ~~~-~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~--~f~ 332 (1113)
T KOG0644|consen 262 PDG-APVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGD--RFL 332 (1113)
T ss_pred CCC-chHHHHhccccceeeeccCc-----cccCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccccc--ccc
Confidence 998 88889999999999999999 22778899999999871 11111 01 1224456666666666 488
Q ss_pred EEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCC-CEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecC
Q 002502 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~ 282 (915)
+|+.|+.-..|.+..-. .+...+.-+..+.+. .+.++.-.+-.+++|++.+|.+++.+..+...+..+.++|-
T Consensus 333 Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred cccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 99999888887654211 111111122222222 35566667778999999999999999999999999999998
Q ss_pred CCeEE-EEecCCeEEEec
Q 002502 283 SRRIV-IGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~-~g~~dg~v~i~~ 299 (915)
...++ .++.||...||.
T Consensus 407 n~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred CcHhhhhccCCCceEeee
Confidence 77665 478888888873
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.62 E-value=1.1e-12 Score=139.87 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=166.3
Q ss_pred CEEEEE-EcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002502 28 PWILAS-LYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 28 ~~la~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+++++. ..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..++.. ....+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 445444 45899999999999999999876554456789999999999999999999999999999998753 3568899
Q ss_pred EcCCCCEEEEEE-cCCeEEEEECCCCceEEEEeec-------CCcceEEEEEecCCCCEEEEEEC-CCcEEEEECCCCCC
Q 002502 107 VHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDP 177 (915)
Q Consensus 107 ~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~ 177 (915)
+|++|++++++. ..+.+.++|.++. +..+.+.. ...++..+..+| ....+++.-. .+.|.+.|....+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccc
Confidence 999999998775 5899999999987 44444332 234677888888 5665555544 58888889877654
Q ss_pred ce-EEecCCCCeeEEEEEeCCCcCEEEE-EECCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCC----------C
Q 002502 178 NF-TLDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPE----------L 241 (915)
Q Consensus 178 ~~-~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~----------~ 241 (915)
.. +............|.|+++ |+++ ...+..|.++|..+++.+..+.. |..++..+ .+|. +
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgr--y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGR--YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSS--EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred cceeeecccccccccccCcccc--eeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 43 2223455667888988876 5555 45678999999998887665532 33333332 2232 2
Q ss_pred CEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEE
Q 002502 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g 289 (915)
...++.-....+.+||..+++.+.++....+. .-+..+|+++++.+.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 22222222335667898999999999887666 778889999999887
No 221
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=135.72 Aligned_cols=286 Identities=14% Similarity=0.149 Sum_probs=189.1
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
...+.+|.+.|+++.|..++. |.+|...|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 345668889999999988776 9999999999999999998888888 67888999999987 46888999999999999
Q ss_pred CCCceEEEEeecCCcceEEEEEec-----CCC---CEEEEEECCC-cEEEEECCCCCCceEE----ecCCCCeeEEEEEe
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNP-----KDT---NTFASASLDR-TIKIWNLGSPDPNFTL----DAHQKGVNCVDYFT 195 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p-----~~~---~~l~~~~~dg-~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~ 195 (915)
..+. .. ..|.-.+.++.|.+ +.. ..++.-+... .+++-|......+... .+..+.+.|..+..
T Consensus 85 a~s~-~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 85 AYSA-FI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred cCcc-eE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 8652 11 12333344444433 101 1111111100 0122222211111111 12345566666433
Q ss_pred -CCCcCEEEEEECCCeEEEEECCCCcE----------EEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCc--e
Q 002502 196 -GGDKPYLITGSDDHTAKVWDYQTKSC----------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--R 262 (915)
Q Consensus 196 -~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~--~ 262 (915)
.+...++++|..+|.+.+||+.++.. +.....|..+|.++.+.+.-..=++|+.+..+..|++... .
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 34445778889999999999998743 3334468889999999886556677888888999987632 2
Q ss_pred --eeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCc
Q 002502 263 --LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGE 340 (915)
Q Consensus 263 --~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~ 340 (915)
...++......+..+...||++.+|+++.|+.++++.- .+.+
T Consensus 241 lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------------------------------rtl~ 284 (323)
T KOG0322|consen 241 LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------------------------------RTLN 284 (323)
T ss_pred ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe------------------------------------ccCC
Confidence 22333334457888999999999999999999998421 1122
Q ss_pred eeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002502 341 RLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (915)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (915)
.+.+ +.-+...+++++|+|+...+|.++ |+++-+|+.
T Consensus 285 pLAV----LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAV----LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhh----hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1211 233445667788888877777776 777777753
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=1.5e-15 Score=152.54 Aligned_cols=230 Identities=11% Similarity=0.136 Sum_probs=191.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002502 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
-....+.++.+|..|+.|+..|.|-.+|+.+++....+.. ...|..+.|-.+.++++++-. ..++|||-..- -...
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt--ElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT--ELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCCc--EEee
Confidence 3456789999999999999999999999999998888764 456889999998888887754 57999996653 3344
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
+..| ..|..+.|-| ..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-.. ++-+|...|+|.+|...
T Consensus 206 lk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSPN 281 (545)
T ss_pred hhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCCC
Confidence 4444 4588999999 788899999999999999999999988888888888888887665 78899999999999999
Q ss_pred CCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 218 TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 218 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
..+++..+-.|.++|.++++.++|.+++|.|.|..++|||+++...+.++.. .-+...+++|..| .||++ ....+.+
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~-~G~~v~i 358 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALS-YGDHVQI 358 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeee-cCCeeee
Confidence 9999888888999999999999999999999999999999999887777665 3566778888665 34443 3445666
Q ss_pred e
Q 002502 298 K 298 (915)
Q Consensus 298 ~ 298 (915)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 6
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-13 Score=134.41 Aligned_cols=190 Identities=16% Similarity=0.254 Sum_probs=140.9
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC----
Q 002502 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---- 175 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~---- 175 (915)
..++.++|++.-..++++..|-.|++|+-... ............|++++|-|.....|++|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence 35788999997667889999999999997764 33333334456799999999878888888864 5889976421
Q ss_pred CC----------ceEEecCCCCeeEEEEEeCCCcCEEEEEE-CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEE
Q 002502 176 DP----------NFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 176 ~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l 244 (915)
.. +..-.+| .+|+++.|.++|. .+++++ .+..|.|||..++..+.......+.++-+.|||||.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1122233 6899999999987 466655 57889999999988766554456778999999999999
Q ss_pred EEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCe
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~ 294 (915)
++++-|+..++|...............++|...+|+|.|++|...+....
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc
Confidence 99999999999964433222222233469999999999998877665433
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-13 Score=153.80 Aligned_cols=256 Identities=15% Similarity=0.190 Sum_probs=179.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAG 75 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~-~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g 75 (915)
+..+...|..|+..|..++.++.. .++++|+.||+|++||...- +...++.....++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 445667788899999999988865 99999999999999998642 1223344457789999999999999999
Q ss_pred eCCCeEEEEECCCC--ce-----eEEEecC-CC-CEEEEEEcCC-C-CEEEEEEcCCeEEEEECCCCceEE-EEeecCCc
Q 002502 76 ADDMFIRVYNYNTM--DK-----VKVFEAH-TD-YIRCVAVHPT-L-PYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSH 143 (915)
Q Consensus 76 ~~dg~i~vwd~~~~--~~-----~~~~~~~-~~-~i~~l~~s~~-~-~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 143 (915)
+.||.|++.+++.. +. ......+ .+ .+..-+|... + ..++.+..-+.|..||++.....- .......+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999988752 11 1111222 22 2333344332 2 367788888999999998652111 11222346
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCC--cCEEEEEE-CCCeEEEEECCCC
Q 002502 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGD--KPYLITGS-DDHTAKVWDYQTK 219 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~l~~~~-~dg~i~iwd~~~~ 219 (915)
.|++++.+| .++.+++|+..|.+.+||++-+.++.... ++..++..+..+|-.. ...+.+++ ..+.|.+|++.+|
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 799999999 88999999999999999999887776653 3456777777776544 32333444 5788999999998
Q ss_pred cEEEEecCC-----------------ccC--eEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 220 SCVQTLEGH-----------------THN--VSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 220 ~~~~~~~~~-----------------~~~--v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
.+...+... ... ....++...+.++++|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 766655422 011 11223333456899999999999999654
No 225
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.3e-14 Score=145.05 Aligned_cols=194 Identities=15% Similarity=0.221 Sum_probs=151.8
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee-
Q 002502 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE- 139 (915)
Q Consensus 61 ~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 139 (915)
.+++|+++|..+++|+.||++|||++.+...+.....|...|.++.|+|||++|++-+.| ...||+.+++ .......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 679999999999999999999999999888888888999999999999999999999999 8999999998 3333222
Q ss_pred -cCCcceEEEEEecCCC---CEE--EEEECCCcEEEEECCCCC-----CceEEecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 140 -GHSHYVMQVTFNPKDT---NTF--ASASLDRTIKIWNLGSPD-----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 140 -~~~~~i~~~~~~p~~~---~~l--~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
...-....+.|+. ++ .++ +.....+.|..|++.... +..+.......|.+++.+.+|+ +++.|+.|
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLALGTMD 302 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEEeccC
Confidence 2233456677876 44 222 223334556666653322 1222223455799999999988 89999999
Q ss_pred CeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC
Q 002502 209 HTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 209 g~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
|.|.|++..+.++++.++ .|..-|+.+.|+|+.+++++.+.+....+..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999998888776554 588899999999999999999888888887654
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=1.5e-13 Score=133.05 Aligned_cols=245 Identities=18% Similarity=0.303 Sum_probs=175.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-----eeEEEEecC------------CCEEEEEEeCCCC--EEEE
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTE------------LPVRSAKFVARKQ--WVVA 74 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~s~~~~--~l~~ 74 (915)
..+-|.++.|..+|.+||+|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999743321 223344443 2588899998764 5677
Q ss_pred EeCCCeEEEEECCCCce-----------------------------------eEEE-ecCCCCEEEEEEcCCCCEEEEEE
Q 002502 75 GADDMFIRVYNYNTMDK-----------------------------------VKVF-EAHTDYIRCVAVHPTLPYVLSSS 118 (915)
Q Consensus 75 g~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~i~~l~~s~~~~~l~~~~ 118 (915)
.+.|.+|++|.+..... .+.+ .+|+-.|.+|.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999997643111 0111 2577779999999999877765
Q ss_pred cCCeEEEEECCCCceEEEEe--ecC-----CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCc----eEE------
Q 002502 119 DDMLIKLWDWEKGWMCTQIF--EGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTL------ 181 (915)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~--~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~------ 181 (915)
+|-.|.+|+++-......+. +++ ..-|++..|+|...+.|+-++..|+|++.|++..... ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56789999987432333332 222 2458899999988899999999999999999843211 111
Q ss_pred ------ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC-CCcEEEEecCCcc------------C---eEEEEEeC
Q 002502 182 ------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTH------------N---VSAVCFHP 239 (915)
Q Consensus 182 ------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~------------~---v~~v~~~~ 239 (915)
..--..|..+.|+++|+ |+++- +--+|++||+. ..+++.+++.|.. . -..++|+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGr--yilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGR--YILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCc--EEEEe-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11224678899999987 66654 34689999994 4566666655432 1 23578999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCce
Q 002502 240 ELPIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~ 262 (915)
++.++++|+..+.+++++...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999976554
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=3.3e-13 Score=151.12 Aligned_cols=262 Identities=14% Similarity=0.167 Sum_probs=187.5
Q ss_pred EECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC-------ceeEEEecCCCCEEEEEEcCCCCE
Q 002502 42 WNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
|+ ..|.++..+..|...|..++.++.. .++++|+.||+|++|+.... +...++.....++.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 4677888888898888888887765 99999999999999998632 222333445678999999999999
Q ss_pred EEEEEcCCeEEEEECCCC--ce----EEEEeecC-Ccce-EEEEEecCCCC-EEEEEECCCcEEEEECCCCCCceEE--e
Q 002502 114 VLSSSDDMLIKLWDWEKG--WM----CTQIFEGH-SHYV-MQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTL--D 182 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~--~~----~~~~~~~~-~~~i-~~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~--~ 182 (915)
+++++.||.|.+.+++.. .. .......+ .+.+ ..-+|...... .++.+...+.|..||++......++ .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998762 11 11111111 2223 33344443444 7888889999999999887665544 3
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec-CCccCeEEEEEeCCCC---EEE-EEE-cCCeEEEE
Q 002502 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELP---III-TGS-EDGTVRIW 256 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~~---~l~-~~~-~dg~v~iw 256 (915)
...+.|++++.+|.+. ++++|+..|.+.+||++-+.++..+. ++..++..++.+|-.+ ..+ +|+ ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~--WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN--WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce--EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4567899999999887 99999999999999999988887765 2446788888777433 444 444 57789999
Q ss_pred eCCCceeeeeeccCC-------------------ccEEEEEEecCCCeEEEEecCCeEEEecCCCccee
Q 002502 257 HATTYRLENTLNYGL-------------------ERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA 306 (915)
Q Consensus 257 d~~~~~~~~~~~~~~-------------------~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~ 306 (915)
++.+|....++.... -.....++...+..+.+|+.|+.|+.|....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999887655543320 11122334444668889999999999876555444
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.4e-14 Score=144.86 Aligned_cols=195 Identities=15% Similarity=0.129 Sum_probs=150.4
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe--
Q 002502 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-- 96 (915)
.+++|+++|..|++|+.||.+|||++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999998888888888899999999999999999999999 89999999996665544
Q ss_pred cCCCCEEEEEEcCCC---CE-EE-EEEcCCeEEEEECCCCce----EEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 97 AHTDYIRCVAVHPTL---PY-VL-SSSDDMLIKLWDWEKGWM----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~---~~-l~-~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
...-....+.|+.++ .+ ++ ....-+.|..|++..... ...........|.+++.++ ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 122345667787766 22 22 223345566655432111 1111122234699999999 99999999999999
Q ss_pred EEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC
Q 002502 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
.+++..+.+..... ..|...|+.+.|+|+.+ ++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 99998776655443 57889999999999887 68888888777776654
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=2.1e-13 Score=134.76 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=193.7
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEE-cCCeEEEEECCCCceeEEE------EecCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 002502 13 QRSERVKSVDLHPSEP-WILASL-YSGTVCIWNYQSQTMAKSF------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~-~dg~v~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (915)
....+|++++|--+++ -++.+. .+..+..+.+....+...+ .....+|..++.. ..+|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 4556788888887665 233443 5666777777665544433 3345566666543 3468888999999999
Q ss_pred ECCCCc----eeEEEecCCCCEEEEEEcCCCCEEE-EEEcC--CeEEEEECCCCceEEEEeecC-----------CcceE
Q 002502 85 NYNTMD----KVKVFEAHTDYIRCVAVHPTLPYVL-SSSDD--MLIKLWDWEKGWMCTQIFEGH-----------SHYVM 146 (915)
Q Consensus 85 d~~~~~----~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~-----------~~~i~ 146 (915)
..+.+. .+..+..+ ..+..+.-++..++|+ +|+.. ..+.+||+.+. .+++..- .-.++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeec
Confidence 988443 23333333 4466677777666555 58887 78999999986 3333321 23467
Q ss_pred EEEEecCC--CCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE
Q 002502 147 QVTFNPKD--TNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 147 ~~~~~p~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
++.|.| + ...|++++.-+.+++||.+.+ +|+..+.....++.++...|+++ ++++|..-|.+..||++.++...
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCceeec
Confidence 888988 5 789999999999999999865 46778888899999999999988 79999999999999999998776
Q ss_pred E-ecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecC
Q 002502 224 T-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 224 ~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~ 282 (915)
. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.+++...... ..++++-+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccEEEecCC
Confidence 6 8888999999999999999999999999999999987666544332 45566666544
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.8e-13 Score=138.85 Aligned_cols=281 Identities=12% Similarity=0.159 Sum_probs=204.1
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
+.+.| .|+..-+.|..+|||+|++ +|.+.-.|++||+..-.+.-.-......|.-.-.+.|-..++.-..|.+|-+-.
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 33333 4788889999999999755 677788999999876654332222334566666666666677777788776654
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
.- |.. ..+. -+..-+.|+++.-..-|++++....|+-++++.| .....+....+.++++..++ -..+|++|+.+|
T Consensus 123 k~-G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g 197 (703)
T KOG2321|consen 123 KY-GRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINE-EHGLLACGTEDG 197 (703)
T ss_pred hc-Cee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecC-ccceEEecccCc
Confidence 22 211 1111 1223345666654444555656668999999998 66666777778899999999 788999999999
Q ss_pred cEEEEECCCCCCceEEec------CCC-----CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec-CCccCeE
Q 002502 166 TIKIWNLGSPDPNFTLDA------HQK-----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVS 233 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~ 233 (915)
.|.+||.+....+.++.. +.+ .|+++.|+.+|- .+++|+.+|.+.|||+++.+++..-. +..-+|.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 999999988776655532 223 389999987665 69999999999999999988766543 2345788
Q ss_pred EEEEeCC--CCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 234 AVCFHPE--LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 234 ~v~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
.+.|.+. ++.+++.. ...++|||-.+|+....+... ..+..+|+-|++.++.++-+++.+..
T Consensus 276 ~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred eecccccCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 9999775 44566554 457999999999988887765 45999999999999999888776654
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=147.18 Aligned_cols=168 Identities=24% Similarity=0.326 Sum_probs=138.8
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcC--CCCEEEEEEcCCeEEE
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHP--TLPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~--~~~~l~~~~~dg~i~i 125 (915)
+...+.+|.+.|.|+.|+.+|.+|++|++|-.+.|||.-..+.+..+. +|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345688999999999999999999999999999999999888887774 8999999999998 4567889999999999
Q ss_pred EECCC---------CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE----------EecCCC
Q 002502 126 WDWEK---------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----------LDAHQK 186 (915)
Q Consensus 126 wd~~~---------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~ 186 (915)
+|+.. .......+..|...|..++-.|..++.|.+++.||+|+-+|++....... +...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 22344556778889999999996679999999999999999987432211 111223
Q ss_pred CeeEEEEEeCCCcCEEEEEECCCeEEEEECC
Q 002502 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
...|+.++|.... +|++|+.+-..++||.+
T Consensus 202 elk~ltisp~rp~-~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPY-YLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCc-eEEecCCCchhhhhhhh
Confidence 4578899987665 99999999999999964
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.1e-12 Score=144.87 Aligned_cols=235 Identities=13% Similarity=0.076 Sum_probs=162.2
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.+||...... +.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3799999765543 445557778999999999999987643 45799999988764332 222334556899999998
Q ss_pred EEEE-EcCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-Cc--EEEEECCCCCCceEEecCCCC
Q 002502 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.+| .|++||++++ ...+.. .+...+....|+| +++.|+..+.+ +. |.++|+.++.. ..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg-~~~~lt-~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC-CEEEcc-CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 8865 4344 5899999887 444433 3345678899999 88877776654 44 55557766543 344444445
Q ss_pred eeEEEEEeCCCcCEEEEEECC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCe---EEEEeCCCc
Q 002502 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT---VRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~---v~iwd~~~~ 261 (915)
.....|+|+|+ +++..+.+ ..|.+||+.++... .+... .......|+|||+.|+.++.++. +.++++ +|
T Consensus 333 ~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 333 NQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred ccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 56789999987 56554432 35888999877643 33322 22346789999999998887764 677776 46
Q ss_pred eeeeeeccCCccEEEEEEecC
Q 002502 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~s~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 666667666677888888873
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=144.96 Aligned_cols=254 Identities=16% Similarity=0.226 Sum_probs=190.9
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCC--CCEEEEEEcCCeEEE
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~--~~~l~~~~~dg~i~i 125 (915)
+...+..|.+.|..+.|+..|..|++|++|..|.+||+.+++....+. +|...|..-.|-|. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 445677899999999999999999999999999999999988877764 78888887778774 356999999999999
Q ss_pred EECCCCceE--EEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe---cCCC---CeeEEEEEeCC
Q 002502 126 WDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK---GVNCVDYFTGG 197 (915)
Q Consensus 126 wd~~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~---~v~~~~~~~~~ 197 (915)
-.+.....+ ...+..|.++|.-++.-|.+...|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876533222 345667999999999999888999999999999999998876654442 2223 45677777766
Q ss_pred CcCEEEEEECCCeEEEEECCCCc------EEEEec------CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC--c--
Q 002502 198 DKPYLITGSDDHTAKVWDYQTKS------CVQTLE------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT--Y-- 261 (915)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~--~-- 261 (915)
.. .+++|+.|..+++||.+.-. .+..+. .....|++++++.++.-+++.-.|-.|+++.-.. |
T Consensus 294 t~-~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TN-EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred cc-ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 79999999999999986421 122222 2234699999997777666666787899995332 2
Q ss_pred --------eee-eeeccCCc--cEEEEE-EecCCCeEEEEecCCeEEEecCCCc
Q 002502 262 --------RLE-NTLNYGLE--RVWAIG-YMKSSRRIVIGYDEGTIMVKIGREE 303 (915)
Q Consensus 262 --------~~~-~~~~~~~~--~v~~i~-~s~~~~~l~~g~~dg~v~i~~~~~~ 303 (915)
..+ +.+++|.. .|..+- |-|...++++|++-|.|.||..+..
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 111 22455532 354544 6788999999999999999854443
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=3.1e-12 Score=130.71 Aligned_cols=271 Identities=12% Similarity=0.115 Sum_probs=186.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------------
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------------ 78 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------------ 78 (915)
+....-++..++|||.|.+|++....| |.+|....+..+..+. | ..|..+.|+|.+++|.+-+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 333556789999999999999877554 8999988776555554 3 458999999999999986543
Q ss_pred ---CeEEEEECCCCceeEEEecCCCC--EE-EEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC-CcceEEEEEe
Q 002502 79 ---MFIRVYNYNTMDKVKVFEAHTDY--IR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFN 151 (915)
Q Consensus 79 ---g~i~vwd~~~~~~~~~~~~~~~~--i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~ 151 (915)
..+.+||..+|..+..+.....+ .+ -+.|+-+.++++-.. ...++|+++ ++......+... ...|....|+
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEec
Confidence 35999999999999998866655 55 688999988877443 346999997 332222111111 2457888899
Q ss_pred cC-CCCEEEE-----EECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE-----------CCCeEEEE
Q 002502 152 PK-DTNTFAS-----ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-----------DDHTAKVW 214 (915)
Q Consensus 152 p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-----------~dg~i~iw 214 (915)
|. ++..|+. .+..+++++|.+..+..+.+-.-....-..+.|.+.|+ ++++-- ....++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK--YLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc--eEEEEEEEeeecccceeccceEEEE
Confidence 84 3334443 34578899999987666554433333345677887777 444321 23568888
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE--EcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecC
Q 002502 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~d 292 (915)
+++...+. ......++|...+|.|.++.+++. -.+..+.++|++.. +...+ +...=..+.|+|.++++++++-+
T Consensus 261 ~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 261 RITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred eecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCC
Confidence 88744333 332567899999999998866654 46778999998754 43333 33344678899999998886543
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=6.1e-13 Score=147.08 Aligned_cols=235 Identities=13% Similarity=0.026 Sum_probs=157.0
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46778886 455555566677889999999999999887642 469999999887643 3333455678999999998
Q ss_pred EE-EEEcCCeEEEEE--CCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CCcEEEEEC--CCCCCceEEecCCCC
Q 002502 114 VL-SSSDDMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNL--GSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|...+|. ..++ . ...+..+........|+| +++.++..+. +|...+|.+ .++.. ..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 87 456677766664 4444 2 333444555567788999 7887776554 456566654 44432 223223333
Q ss_pred eeEEEEEeCCCcCEEEEEECCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---eEEEEeCCCc
Q 002502 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
.....|+|+|+ +++..+.++ .|.+||+.+++...... . .......|+|+|+.|+.++.++ .+.+.+. ++
T Consensus 330 ~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 330 NTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred cCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 45678999988 566655443 69999998876543322 2 2346789999999888776544 3566665 46
Q ss_pred eeeeeeccCCccEEEEEEecC
Q 002502 262 RLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~s~~ 282 (915)
+....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 656556555566777788774
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.5e-12 Score=144.49 Aligned_cols=234 Identities=13% Similarity=0.048 Sum_probs=160.5
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 469999975 4445556667788999999999999998764 3479999998876543 3334445567899999998
Q ss_pred EE-EEEcCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CCc--EEEEECCCCCCceEEecCCCC
Q 002502 114 VL-SSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+| .|++||+.++ .... +..+.......+|+| +++.++.++. +|. |.++++.+++.. .+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g-~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSR-QLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 76 445555 5999999887 3333 344545556789999 7887776664 444 677777665533 33333344
Q ss_pred eeEEEEEeCCCcCEEEEEECCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CeEEEEeCCCc
Q 002502 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~v~iwd~~~~ 261 (915)
....+|+|+|+ +++..+.++ .|.+||+.+++.. .+. +........|+|+|+.|+..+.+ +.|.++++. +
T Consensus 338 ~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 55789999988 565544332 6999999877654 333 22234567999999988876653 458888874 4
Q ss_pred eeeeeeccCCccEEEEEEec
Q 002502 262 RLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~s~ 281 (915)
.....+..+.+.+...+|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 55555555556677777876
No 237
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.8e-12 Score=138.27 Aligned_cols=443 Identities=12% Similarity=0.113 Sum_probs=267.7
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCC------------CEEEEEeCCCeEE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK------------QWVVAGADDMFIR 82 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~g~~dg~i~ 82 (915)
...-.++.|+|.| ++|.|+ ...|.+-|..+-+.++++..|...|+.+.|.|-. -.||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346789999988 577776 4579999999999999999999999999998831 2567777899999
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCC---C-CEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
+||...+..+..+..|.+++..++|-+. . ..|+.-....+|.+|+..+|.+. -..........|+.+.|-+...|
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~-Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF-WKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-eccccCCcceeeeeeCCCCcceE
Confidence 9999999888889999999999999763 3 35666677789999999998433 33333335577799999888888
Q ss_pred EEEECCCcEEEEECCCCC-------CceEEecCCC----------------C---------eeEEEEEeCCCcCEEEEEE
Q 002502 159 ASASLDRTIKIWNLGSPD-------PNFTLDAHQK----------------G---------VNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~----------------~---------v~~~~~~~~~~~~~l~~~~ 206 (915)
...+..|.+.+.+.-..+ ..+....|.. . ...++|+|.-++ ++...
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~ 249 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFIT 249 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEE
Confidence 888888888777653211 1111111111 0 112345666554 33334
Q ss_pred CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC--EEEEEEcCCeEEEEeCCCcee----------------eeeec
Q 002502 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRIWHATTYRL----------------ENTLN 268 (915)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~dg~v~iwd~~~~~~----------------~~~~~ 268 (915)
....+.++|++-..++....-..+.+.-+.+-|+++ .|++...||.+.+|-.+.... ...+.
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 466799999998888888776667677777877654 789999999999997443111 11111
Q ss_pred cC-CccEEEEEEecC-CCeEEEEecCCeEEEecCCCccee------------EEcCCCcEEEEeecceEEEEeeecccce
Q 002502 269 YG-LERVWAIGYMKS-SRRIVIGYDEGTIMVKIGREEPVA------------SMDNSGKIIWAKHNEIQTVNIKSVGADY 334 (915)
Q Consensus 269 ~~-~~~v~~i~~s~~-~~~l~~g~~dg~v~i~~~~~~~~~------------~~~~~g~~~~~~~~~i~~~~~~~~~~~~ 334 (915)
.. .-++......|. ...+++-..+|.+.+|..+...+. .++.++............+...+
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg----- 404 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG----- 404 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC-----
Confidence 00 112222333343 445555666777777754422211 12222222211111111111000
Q ss_pred eccCCceeeeeeeecCCcccCCceEEECCCC-------CEEEEEc-CCcEEEEEeeccc-----ccCccceeEEEEecCC
Q 002502 335 EVTDGERLPLAVKELGTCDLYPQSLKHNPNG-------RFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDG 401 (915)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g-------~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~dg 401 (915)
..+.|..+.. .... ..++...--|.| .++|+|+ .|.+.++++.... ..+.+.+.++-|....
T Consensus 405 ~h~sGs~~~~-~~p~----p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 405 SHSSGSTCVR-MRPM----PELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred CCCCCceeee-cccC----cccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence 0111211110 0000 011111222222 2677887 8999999887653 3345667788887666
Q ss_pred cEEEEecC----------CeEEEeccCcceeeeeec----Ccccceee----cCcEEEEeeCC-eEEEEeccCCcEEEEE
Q 002502 402 EYAVRESS----------SKIKIFSKNFQEKRSVRP----TFSAERIY----GGTLLAMCSND-FICFYDWAECRLIRRI 462 (915)
Q Consensus 402 ~~l~~~~~----------~~v~v~~~~~~~~~~~~~----~~s~~~i~----~g~~La~~~~~-~i~~~d~~~~~~i~~~ 462 (915)
+++....+ +.+.|-|+...-.+.++. .-+|-.+. .+++|++.-.+ -+.+||+.+..+++..
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 65544331 133444432211111221 11111111 48899999988 9999999888776654
Q ss_pred e--cc-ccEEEEc
Q 002502 463 D--VT-VKNLYWA 472 (915)
Q Consensus 463 ~--~~-i~~v~~s 472 (915)
. -+ ++.+.|+
T Consensus 560 S~a~P~it~leWs 572 (1062)
T KOG1912|consen 560 SLALPLITVLEWS 572 (1062)
T ss_pred hhcCCcEEEEeec
Confidence 4 24 8889998
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5e-12 Score=130.99 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=180.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe-----C-----CCeEEEE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-----D-----DMFIRVY 84 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-----~-----dg~i~vw 84 (915)
+.+++..++|++|+++|.+. +..|.|++..++..+.+.... .+.++.|+|-|.+|.+-- . .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44578899999999888875 778999998888644443322 789999999999887631 1 2357899
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEE-----------------
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ----------------- 147 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~----------------- 147 (915)
++.++.....+......-++..|+.|..+.+ --..+.+.+|++.+.......+ |...|..
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 9998555444432222225777777665322 1223456666665532222221 2233344
Q ss_pred -----------------------------------EEEecCCCCEEEEEEC--C---------CcEEEEECCCCCCceEE
Q 002502 148 -----------------------------------VTFNPKDTNTFASASL--D---------RTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 148 -----------------------------------~~~~p~~~~~l~~~~~--d---------g~i~i~d~~~~~~~~~~ 181 (915)
+.|++....+|+..+. | .++++.++.+......
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~- 266 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP- 266 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-
Confidence 4444422233333222 1 2344444442222222
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CeEEEEeC
Q 002502 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHA 258 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~v~iwd~ 258 (915)
-...++|.++.|++++..--++-|..-..+.|||++ +.++..+. .++-.++-|+|.|++|+.+|-+ |.|-+||+
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 235789999999999987556667778899999987 77776664 5667789999999999888754 78999999
Q ss_pred CCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 259 TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
.+.+++..+..... +-+.|+|||.++++++..-.+++
T Consensus 344 ~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 344 PNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred cchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 99888887776533 56889999999999998877777
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=144.61 Aligned_cols=222 Identities=9% Similarity=0.020 Sum_probs=154.9
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~ 82 (915)
+.+..+.+.+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445566778999999999999987643 3579999998876433 33333445678999999998865 3344 699
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+||+.+++... +..+...+....|+|+|+.|+.++.+ | .|+++|+.++ ..... ..+........|+| +++.++
T Consensus 271 ~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~l-t~~~~~~~~~~~Sp-DG~~Ia 346 (429)
T PRK03629 271 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQRI-TWEGSQNQDADVSS-DGKFMV 346 (429)
T ss_pred EEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEEe-ecCCCCccCEEECC-CCCEEE
Confidence 99998876544 33344567889999999998877764 3 4555577766 33322 33334456788999 788887
Q ss_pred EEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCe---EEEEECCCCcEEEEecCCccCeE
Q 002502 160 SASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT---AKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~ 233 (915)
..+.+ ..|.+||+.++... .+.. ........|+|+|. +|+.++.++. +.++++ +|.....+..|.+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGT--MVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVK 421 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCC--EEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcC
Confidence 76543 35888999877533 3332 22345678999988 5777766653 677787 4666777777888888
Q ss_pred EEEEeCC
Q 002502 234 AVCFHPE 240 (915)
Q Consensus 234 ~v~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 9999873
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.3e-12 Score=141.20 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=161.7
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899974 4455667778889999999999999988764 468999999887653 44456667788999999998
Q ss_pred EE-EEEcCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002502 114 VL-SSSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+ +.+.+|. |++||+.++ ... .+..+........|+| +++.++..+. +| .|.++|+.++.. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~-~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSG-TTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCC-ceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 76 4455554 777898877 333 3444555667889999 7887777664 33 588889876544 344434555
Q ss_pred eeEEEEEeCCCcCEEEEEECC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC------CeEEEEeC
Q 002502 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHA 258 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------g~v~iwd~ 258 (915)
+....|+|+|+ .|+....+ ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+ ..+.++|+
T Consensus 336 ~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 336 YSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 67788999998 56555432 3688889765443 3333 22346788999999988765543 25788887
Q ss_pred CCceeeeeeccCCccEEEEEEecC
Q 002502 259 TTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~s~~ 282 (915)
..+.. ..+.. .+.+...+|+|-
T Consensus 412 ~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCce-EEccC-CCCccCcccCCC
Confidence 65543 34432 234566777763
No 241
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.53 E-value=1.3e-08 Score=120.88 Aligned_cols=234 Identities=12% Similarity=0.143 Sum_probs=151.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCC----eEEEEECCCCc---eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEE
Q 002502 58 LPVRSAKFVARKQWVVAGADDM----FIRVYNYNTMD---KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg----~i~vwd~~~~~---~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~i 125 (915)
..+...+|.+..+.+.+..... .|.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3566667777665544433321 23333332222 222222 23568999999999999999999999999
Q ss_pred E----ECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC---------------C--------CCCc
Q 002502 126 W----DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------------S--------PDPN 178 (915)
Q Consensus 126 w----d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~---------------~--------~~~~ 178 (915)
. +..+. .......-...|.+++||| |..+++..+.++++.+.+.. . |+..
T Consensus 102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDED--EIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCc--eeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 55543 3344444567799999999 99999999999998776521 0 0111
Q ss_pred eEEec------------------------CCCCeeEEEEEeCCCcCEEEEEEC------CCeEEEEECCCCcEEEEecCC
Q 002502 179 FTLDA------------------------HQKGVNCVDYFTGGDKPYLITGSD------DHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 179 ~~~~~------------------------~~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.+|.+ ....-..++|- |++.|+++.+- -+.+++|+-. |....+-..-
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 11100 11123345554 44458888764 2579999954 7655444433
Q ss_pred ccCeEEEEEeCCCCEEEEEEc---CCeEEEEeCCCceeeeeecc----CCccEEEEEEecCCCeEEEEecCCeEEEec
Q 002502 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 229 ~~~v~~v~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~ 299 (915)
.+--.+++|.|.|++|++... ...|.+|. ++|-....+.. ....|..+.|++++..||+...+. |.+|.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 344457899999999998764 34688888 55655444433 346799999999999999988666 77763
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4e-11 Score=124.45 Aligned_cols=319 Identities=15% Similarity=0.255 Sum_probs=201.7
Q ss_pred CCeEEEEECCCCcee-EEEEe--cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002502 36 SGTVCIWNYQSQTMA-KSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 36 dg~v~iwd~~~~~~~-~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
+-.+.+|+....... ..+.. ...+++..+++++|++++.+ .+..+.|++..++..+.+.... .+.++.|+|-+.
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence 345788886543222 22322 14457888999999877776 5578999999888655444432 789999999999
Q ss_pred EEEEE-----Ec-----CCeEEEEECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE
Q 002502 113 YVLSS-----SD-----DMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 113 ~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 181 (915)
+|.+= .. .-.+.+|+++++ .....+. ..... ++..|++ |.. +++--..+.+++|++.+.+.+. -
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~-~ 161 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ-H 161 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-ccccccc-chh-hhhhhhcceEEEEecCCcccee-e
Confidence 88752 11 235779999986 3333332 22222 6888887 443 4433445789999998754332 2
Q ss_pred ecCCCCeeEEEEEeCCCcCEEEE-----EECCCeEEEEECCCCcE-----EEEecCCccCeEEEEEeCCCCE-EEEEE--
Q 002502 182 DAHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSC-----VQTLEGHTHNVSAVCFHPELPI-IITGS-- 248 (915)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~v~~~~~~~~-l~~~~-- 248 (915)
.-|...++.+.++|.+....+++ .+.-+.|+||.+..... .++| ....=..+.|++-|.- |+..+
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastd 239 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTD 239 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEe
Confidence 34678899999999876656665 34456899998762221 1111 1222345778887762 22222
Q ss_pred cC---------CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEE--ecCCeEEEecCCCcceeEEcCCCcEEEE
Q 002502 249 ED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG--YDEGTIMVKIGREEPVASMDNSGKIIWA 317 (915)
Q Consensus 249 ~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g--~~dg~v~i~~~~~~~~~~~~~~g~~~~~ 317 (915)
-| .++++.++......-.+. ..++|.++.|+|+|+-+++. ..--.+.| ++..|+.++.
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvti----------fnlr~~~v~d 308 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTI----------FNLRGKPVFD 308 (566)
T ss_pred ecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEE----------EcCCCCEeEe
Confidence 22 358888877333333333 35899999999999877763 33334444 3333333321
Q ss_pred eecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccCc---c
Q 002502 318 KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSF---G 390 (915)
Q Consensus 318 ~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~---~ 390 (915)
+ .+.+-..+-|+|.|+++++++ .|.+-+|++...+.... .
T Consensus 309 ------------------f---------------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 309 ------------------F---------------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred ------------------C---------------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 1 122345889999999999987 58899999887543322 2
Q ss_pred ceeEEEEecCCcEEEEec
Q 002502 391 SALEFVWSSDGEYAVRES 408 (915)
Q Consensus 391 ~~~~~~~s~dg~~l~~~~ 408 (915)
..+-+.|+|||+++++++
T Consensus 356 ~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CceEEEEcCCCcEEEEEe
Confidence 346688999999887765
No 243
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=8.6e-12 Score=128.49 Aligned_cols=336 Identities=15% Similarity=0.190 Sum_probs=213.3
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEC
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----------DMFIRVYNY 86 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----------dg~i~vwd~ 86 (915)
-+-+.|||.|.||++--.-| |.+|--.+...++.|. |. .|.-+.|||..++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999988766 8899877766666665 54 4889999999999998653 257999999
Q ss_pred CCCceeEEEecCC--CCE-EEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 87 NTMDKVKVFEAHT--DYI-RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 87 ~~~~~~~~~~~~~--~~i-~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.||...+.|.... ..+ .-..||.|++++|--..+ +|.||+..+. .+...-.-....|....|+| .++.||--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~Kslki~gIr~FswsP-~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKKSLKISGIRDFSWSP-TSNLLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeecccccCCccccCcccCC-CcceEEEEcc
Confidence 9999988886522 222 346899999999977764 6999987764 22222222335588889999 6777765432
Q ss_pred -----CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC----------CCeEEEEECCCCcE-EEEecC
Q 002502 164 -----DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD----------DHTAKVWDYQTKSC-VQTLEG 227 (915)
Q Consensus 164 -----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~-~~~~~~ 227 (915)
-..+.+..+.+++.+++..-+.-.-..+.|-.+|+ +|+.--. -..+.|+.++.... +..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd--yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD--YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc--EEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-
Confidence 12355666666655555444443334556666666 6665321 12355666665443 33332
Q ss_pred CccCeEEEEEeCCCCEEEEEEc---CCeEEEEeCCC-c---eeeeeeccCCccEEEEEEecCCCeEEEEec---CCeEEE
Q 002502 228 HTHNVSAVCFHPELPIIITGSE---DGTVRIWHATT-Y---RLENTLNYGLERVWAIGYMKSSRRIVIGYD---EGTIMV 297 (915)
Q Consensus 228 ~~~~v~~v~~~~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~---dg~v~i 297 (915)
....|...+|-|.|..+++-+. ..++.+|.+.+ . +++..+. ....+.+.|+|.|++++++.- .|.+.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEE
Confidence 4567889999999987776543 24688888763 2 2333333 245678999999999998654 333333
Q ss_pred ecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-----
Q 002502 298 KIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----- 372 (915)
Q Consensus 298 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----- 372 (915)
. +.. ..+-+... .......+.+-|.|.|+++++++
T Consensus 522 ~---------------------------D~~-------~a~~k~~~------~~eh~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 522 Y---------------------------DTD-------YADLKDTA------SPEHFAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred E---------------------------ecc-------hhhhhhcc------CccccccccceECCCCCEEEEeeehhhh
Confidence 1 100 00000000 00112346789999999999885
Q ss_pred --CCcEEEEEeeccc--ccCccceeEEEEecCCcEE
Q 002502 373 --DGEYIIYTALAWR--NRSFGSALEFVWSSDGEYA 404 (915)
Q Consensus 373 --~~~~~i~~~~~~~--~~~~~~~~~~~~s~dg~~l 404 (915)
+..+.+|+.++.- ....+....+.|-|.--.+
T Consensus 562 k~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~ 597 (698)
T KOG2314|consen 562 KVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSL 597 (698)
T ss_pred ccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcc
Confidence 5678888776532 2222334456666544333
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=5.2e-11 Score=121.94 Aligned_cols=243 Identities=14% Similarity=0.169 Sum_probs=165.6
Q ss_pred EEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc
Q 002502 40 CIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (915)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 119 (915)
.+|+..+...-..+....-++..+.|||.|.+|++....| |.+|....+..+..+. | ..|..+.|||.+++|.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeecc
Confidence 3455545444444555667899999999999999876654 8899988777666665 3 35899999999999998654
Q ss_pred C---------------CeEEEEECCCCceEEEEeecCCcc--eE-EEEEecCCCCEEEEEECCCcEEEEECCCCCC-ceE
Q 002502 120 D---------------MLIKLWDWEKGWMCTQIFEGHSHY--VM-QVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFT 180 (915)
Q Consensus 120 d---------------g~i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~ 180 (915)
. ..+.+||+.++ .+...+.....+ .+ -+.|+- +..+++-. ....++|+++ ++.. ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCc
Confidence 3 34999999998 667666655544 33 567776 55555443 3457899997 3221 111
Q ss_pred Ee-cCCCCeeEEEEEeCCCcCEEEE-----EECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE------
Q 002502 181 LD-AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS------ 248 (915)
Q Consensus 181 ~~-~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~------ 248 (915)
+. ....++....|+|.+++..|+. ++..+.+++|.+..++.+.+..-....-..+.|.+.|.+|++-.
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1236688889999877666554 45678999999987776655443333445688999998776421
Q ss_pred -----cCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 249 -----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 249 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
....++|+++.... +.......++|...+|.|.++.+++.+
T Consensus 248 nKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 248 NKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence 12457888876333 222224468999999999998887644
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.6e-12 Score=143.85 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=150.1
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCCeEEEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVY 84 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~vw 84 (915)
+.+..+.+.+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999987652 459999998886543 4434456778999999998875 5667765555
Q ss_pred --ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEE--CCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 85 --NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 85 --d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
|..++. ...+..+........|+|||+.|+..+. +|...+|. ..++ ...... .+........|+| +++.++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-AAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-ceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 454443 4555555556677899999998886664 45556664 4454 222222 2223345678999 888888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC-CC--eEEEEECCCCcEEEEecCCccCeE
Q 002502 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~ 233 (915)
..+.++ .|.+||+.+++.. .+.. ........|+|+++ .|+..+. .| .+.+.+. ++.....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGR--YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCC--EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 776654 5999999877643 3322 23346789999988 4555543 33 3566666 4666666665667778
Q ss_pred EEEEeCC
Q 002502 234 AVCFHPE 240 (915)
Q Consensus 234 ~v~~~~~ 240 (915)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 8888874
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.3e-12 Score=127.55 Aligned_cols=220 Identities=9% Similarity=0.125 Sum_probs=169.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEE-EEeCC--CeEEEEEC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVV-AGADD--MFIRVYNY 86 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~d--g~i~vwd~ 86 (915)
.+.+|..++.. ..+|++|..+|.+.+|..+.+. .+..+..+ .++..+.-++....|+ +|+.. ..+.+||+
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 34455555443 3467888889999999987442 22233323 4577777777666555 58888 88999999
Q ss_pred CCCceeEEEecCC---------CCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCC
Q 002502 87 NTMDKVKVFEAHT---------DYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 87 ~~~~~~~~~~~~~---------~~i~~l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~ 155 (915)
++.+++..-+.-. -.++.+.|-+. ...|++++.-+.+++||.+.++.+...+.-...+++++...| ++
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~g 259 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SG 259 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CC
Confidence 9886655443211 13677888887 778999999999999999999888888888889999999999 89
Q ss_pred CEEEEEECCCcEEEEECCCCCCceE-EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEE
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 234 (915)
+.+++|..-|.+..||+++++.... +.+..+.+.++..+|... ++++++-|+.|+|+|+++.+.+...- -...+++
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~ 336 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTF 336 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchhhhhhh-hhccccE
Confidence 9999999999999999999887765 788889999999988766 89999999999999999866654433 2344566
Q ss_pred EEEeCC
Q 002502 235 VCFHPE 240 (915)
Q Consensus 235 v~~~~~ 240 (915)
+.+.++
T Consensus 337 il~~~~ 342 (412)
T KOG3881|consen 337 ILLRDD 342 (412)
T ss_pred EEecCC
Confidence 666543
No 247
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=133.81 Aligned_cols=246 Identities=16% Similarity=0.230 Sum_probs=171.2
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeE----EEEecCCCEEEEEE-----eCCCCEEEEEeCCCeEEEEECC
Q 002502 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK----SFEVTELPVRSAKF-----VARKQWVVAGADDMFIRVYNYN 87 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~~~~-----s~~~~~l~~g~~dg~i~vwd~~ 87 (915)
.++....+-.|.+|...- ...+++|+++.+..+. ...-......|-+| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 344555555666666543 4568899887532211 11111122334444 3466678899999999999876
Q ss_pred CCceeEEEe----cCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 88 TMDKVKVFE----AHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 88 ~~~~~~~~~----~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
..+..+.+. -....++|+.|-|.+. .++++..+|.+++||..-. .+-+.+ +....+ ++..|....
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~t~p--~~~~~k-~~~~f~i~t 273 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGATAP--SYQALK-DGDQFAILT 273 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccCCCC--cccccC-CCCeeEEee
Confidence 532222121 2346799999999554 5667778999999986321 011111 111122 455555543
Q ss_pred CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCC
Q 002502 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 242 (915)
.-+. .+..++..+.-..+.|+..+|+|+|. +|++.+.||.++|||+.+.+.+..++..-+...|++|+|||+
T Consensus 274 ~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 274 SKSK------KTRNPVARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred eecc------ccCCccceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc
Confidence 2211 12245555555567899999999887 899999999999999998888777777788899999999999
Q ss_pred EEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEec
Q 002502 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~ 281 (915)
+|++|++|--|.||.+...+.+..-++|...|..++|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999998
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.7e-12 Score=142.62 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=153.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i 81 (915)
.+.+..|...+.+.+|+|||+.|+..+. ...|.+||+.+++... +....+...+.+|+|||+.|+.. +.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 3456677788999999999999998764 3469999998876533 33345556688999999988644 4454 69
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+.......+|+|+|++|+.++. +|. |+++++.++. ..... .+........|+| +++.+
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~~g~~~~~~~~Sp-DG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-FQGNYNARASVSP-DGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-cCCCCccCEEECC-CCCEE
Confidence 9999988764 345555555678899999998887764 444 7777777663 33222 2334455789999 88888
Q ss_pred EEEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC---CCeEEEEECCCCcEEEEecCCccCe
Q 002502 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 159 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v 232 (915)
+..+.++ .|.+||+.+++.. .+. +........|+|+|+ +++..+. .+.|.+++.. +.....+..+.+.+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEEcccCCCCC
Confidence 7765443 5999999877644 333 222445678999988 4555443 2468888875 55556665556667
Q ss_pred EEEEEeC
Q 002502 233 SAVCFHP 239 (915)
Q Consensus 233 ~~v~~~~ 239 (915)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 7788876
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=7.4e-12 Score=139.31 Aligned_cols=222 Identities=11% Similarity=0.032 Sum_probs=154.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEE-EeCCC--eE
Q 002502 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDM--FI 81 (915)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg--~i 81 (915)
.+.+..|...+.+.+|||||+.|+..+. +..|.+||+.+++. ..+..+.+.+.+.+|+|||+.|+. .+.++ .|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3556778889999999999999998764 46899999988865 345556677889999999998864 44454 57
Q ss_pred EEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+||+.+++. ..+..+........|+|+|+.|+..+. + ..|++||+.++ ...... .+...+....|+| +++.+
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt-~~~~~~~~~~~Sp-dG~~i 348 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRIS-FGGGRYSTPVWSP-RGDLI 348 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEee-cCCCcccCeEECC-CCCEE
Confidence 8889887654 445556666778999999999887764 3 36888898776 333332 2344567788999 88888
Q ss_pred EEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC-C-----CeEEEEECCCCcEEEEecCCc
Q 002502 159 ASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D-----HTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 159 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~ 229 (915)
+..+.+ ..|.+||+.++. ...+. ....+....|+|+|+ .|+..+. . ..+.++|+..+.. ..+. ..
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~ 422 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TP 422 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CC
Confidence 776653 358888876543 33333 233567889999987 4544333 2 3588888865544 4444 24
Q ss_pred cCeEEEEEeCC
Q 002502 230 HNVSAVCFHPE 240 (915)
Q Consensus 230 ~~v~~v~~~~~ 240 (915)
+.+...+|+|-
T Consensus 423 ~~~~~p~Wsp~ 433 (435)
T PRK05137 423 GDASDPAWSPL 433 (435)
T ss_pred CCccCcccCCC
Confidence 45667778763
No 250
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=6.7e-13 Score=136.10 Aligned_cols=137 Identities=19% Similarity=0.431 Sum_probs=113.7
Q ss_pred CCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCC--------------Cc--------------eeEEEEecCCCEEEEEE
Q 002502 15 SERVKSVDLHPSEP-WILASLYSGTVCIWNYQS--------------QT--------------MAKSFEVTELPVRSAKF 65 (915)
Q Consensus 15 ~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~--------------~~--------------~~~~~~~~~~~v~~~~~ 65 (915)
..+|+|+.|-|.+. .++++-.+|.+.+||..- +. .+..+....+.|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999554 455555699999997521 11 11112223457888999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcce
Q 002502 66 VARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV 145 (915)
Q Consensus 66 s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i 145 (915)
+|||++||+.+.||.++|||+.+.+.+..++.--+...|++|||||++|++|+.|..|.||.+... +++..-.+|++.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence 999999999999999999999998888888877788999999999999999999999999999987 6777778999999
Q ss_pred EEEEEec
Q 002502 146 MQVTFNP 152 (915)
Q Consensus 146 ~~~~~~p 152 (915)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999987
No 251
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=2.9e-12 Score=124.46 Aligned_cols=212 Identities=21% Similarity=0.355 Sum_probs=163.9
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEEC-CCCceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNY-QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~-~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (915)
++.+.+.++||.+.|.....-|..+-+.+.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-.+|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 56678899999999999999998888999999999999953 3444433332 346789999999999999999999999
Q ss_pred EEEEC----CCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---------------------------
Q 002502 82 RVYNY----NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--------------------------- 130 (915)
Q Consensus 82 ~vwd~----~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------- 130 (915)
.-+.+ +....++....|..++..+-|+-....+++.+.|..+.---.+.
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 98865 34445556667888888888877766777666654432211111
Q ss_pred -------------CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-ceEEecCCCCeeEEEEEeC
Q 002502 131 -------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTG 196 (915)
Q Consensus 131 -------------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 196 (915)
...+...+.+|...+.+++|.| ....+.+|..|..+.+||+...+- ...+.+|...|..+.+.+-
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 1234455678999999999999 888999999999999999976543 3566788889988888776
Q ss_pred CCcCEEEEEECCCeEEEEECCC
Q 002502 197 GDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
.. .+++++.||.|.+|+++.
T Consensus 252 t~--~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 TR--QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred he--eeeeccCCCeEEEEeccc
Confidence 65 699999999999999753
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.46 E-value=3.4e-09 Score=107.57 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=127.8
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCceEEEEeec------CC-----cceEEEE-EecCCCCEEEEEECCCcEEEEECCCC
Q 002502 108 HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG------HS-----HYVMQVT-FNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~~i~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
+.||+.++. +..|.|.+||..+. .+.+.-.+ .. .+..-+. |++.++++++..|. |...+.+...+
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 345655554 34477888888765 22222111 00 0011111 44456888888875 67777765444
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC-eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEE
Q 002502 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~ 254 (915)
-.+. -++...|.-..+..++. -++.|..|| .+-++|..+++ +..+...-+.|.++..+|+|++++++.....+.
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3332 35677788888877776 488888888 89999988665 445566778999999999999999998888999
Q ss_pred EEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEE
Q 002502 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~ 296 (915)
+.|+.++.....-+...+-|+.+.|+|+++++|-+.-+|.+.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 999999987655555567899999999999999988877654
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.9e-11 Score=125.17 Aligned_cols=235 Identities=15% Similarity=0.189 Sum_probs=165.5
Q ss_pred cCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecC--CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc
Q 002502 56 TELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
+....+.|..+|||+++. +|...-.|++||+.+.... |..| ...|...-.+.|-..++.-..|.+|-+-.--..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~- 126 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR- 126 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe-
Confidence 556678899999999865 6667889999999865433 3333 345666666666556666667777766543221
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEE
Q 002502 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (915)
..... ....-..++++.-...+++. +....|+-+++..|..+..+....+.++++..++-.. +|++|+.+|.|.
T Consensus 127 hy~~R---IP~~GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~Gt~~g~VE 200 (703)
T KOG2321|consen 127 HYRTR---IPKFGRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLACGTEDGVVE 200 (703)
T ss_pred eeeee---cCcCCccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccc--eEEecccCceEE
Confidence 11111 12223456666534444444 4456789999999998888888889999999988765 899999999999
Q ss_pred EEECCCCcEEEEecC------Ccc-----CeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeec-cCCccEEEEEEe
Q 002502 213 VWDYQTKSCVQTLEG------HTH-----NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYM 280 (915)
Q Consensus 213 iwd~~~~~~~~~~~~------~~~-----~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~s 280 (915)
+||.++...+.++.. |.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. ...-+|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999998776655532 222 39999999999999999999999999999888665433 234578888887
Q ss_pred cCC-CeEEEEecCCeEEEec
Q 002502 281 KSS-RRIVIGYDEGTIMVKI 299 (915)
Q Consensus 281 ~~~-~~l~~g~~dg~v~i~~ 299 (915)
+.+ +--++..+...++||.
T Consensus 281 ~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 281 DTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred ccCCCceEEecchHHhhhcc
Confidence 763 2334455556666663
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=2.4e-11 Score=117.50 Aligned_cols=149 Identities=19% Similarity=0.321 Sum_probs=110.3
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCC-CceeEEEEe-cCCCEEEEEEeCCCCEEEEE--eCCCeEEEE
Q 002502 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARKQWVVAG--ADDMFIRVY 84 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~----------dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g--~~dg~i~vw 84 (915)
..+.|+|+|.+|++-.. -|...||-++. +..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56889999998876443 23455555532 334455544 35579999999999997655 356799999
Q ss_pred ECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 85 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++. ....... | ..+..++|+| ++++|+++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsP-dGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSP-DGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcC-CCCEEEEE
Confidence 996 66666664 567889999999999999875 367999999976 4443332 3 3478999999 99999988
Q ss_pred EC------CCcEEEEECCC
Q 002502 162 SL------DRTIKIWNLGS 174 (915)
Q Consensus 162 ~~------dg~i~i~d~~~ 174 (915)
+. |..++||+..+
T Consensus 162 ~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EeccceeccccEEEEEecC
Confidence 75 67789999843
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.4e-10 Score=119.84 Aligned_cols=306 Identities=16% Similarity=0.225 Sum_probs=189.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEEC
Q 002502 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDW 128 (915)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~ 128 (915)
-+-+.|||.|.+|++--..| |.+|--.+...++.|. |+ .|..+.|||..+||++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987766 8899766555566664 55 4889999999999998653 257999999
Q ss_pred CCCceEEEEeec--CCcce-EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEE
Q 002502 129 EKGWMCTQIFEG--HSHYV-MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 129 ~~~~~~~~~~~~--~~~~i-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+| ...+.+.. ....+ .-..||. |+.++|.-.. .+|.||+..+..+.-.-.-.-.+|....|+|.+. +|+-=
T Consensus 290 ~tG-~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAYw 364 (698)
T KOG2314|consen 290 ATG-LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAYW 364 (698)
T ss_pred ccc-chhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc--eEEEE
Confidence 999 55555443 22222 3457888 7888887766 5789998765433322233456788889999876 44432
Q ss_pred EC-----CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCceeeeeeccC
Q 002502 206 SD-----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 206 ~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.. -..+.+..+.+++.+++..-+.-.=..+-|-.+|.+|+.-- .-..+-|+.++.....-..-.-
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 21 24577777777877777665544444567778888887532 1123556665544322222223
Q ss_pred CccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecC
Q 002502 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (915)
Q Consensus 271 ~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (915)
...|...+|-|.|+.+++-+.+-. ...+..+.+.. ++....+ ++.+.
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~------------------------k~tvsfY~~e~--------~~~~~~l-Vk~~d 491 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTV------------------------KNTVSFYAVET--------NIKKPSL-VKELD 491 (698)
T ss_pred chheeeeeeccCCCeEEEEEcccc------------------------ccceeEEEeec--------CCCchhh-hhhhc
Confidence 367889999999998887443321 01111222110 1111111 11111
Q ss_pred CcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccC-----ccceeEEEEecCCcEEEEec
Q 002502 351 TCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRS-----FGSALEFVWSSDGEYAVRES 408 (915)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~ 408 (915)
. ...+.+.|+|.|+++++++ .|.+.+|+......+. .-..+.+-|.|.|+|+++.+
T Consensus 492 k--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 1 2446899999999999875 5677777765322111 12235666777777766554
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=3.6e-10 Score=125.94 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=156.6
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
+.|....+.-....++.++.++.+.|||...+.....+..... +..-+.++++.-++++|+.-+.|.+|.....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344455556677888888899999999888766655543222 233345567778899999999999999884444
Q ss_pred eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 92 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
...+.+|.+.|.++.|+.+|.++++.|+|.++++|++++........-+|+.+++.++|.| . .+++++.|-+.++|+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWG 244 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEe
Confidence 4468899999999999999999999999999999999998666667778999999999998 3 999999999999997
Q ss_pred CCCCCCceEEecCC-CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC
Q 002502 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
.+. +....+..|. +.+..+...++.. .+++++.|+.+++|++..
T Consensus 245 ~~~-~~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNG-TQLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc-ceehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhhhc
Confidence 644 3344565554 4577888776654 799999999999999864
No 257
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.5e-10 Score=129.35 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=154.6
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
..|.++|.... ..+.+..+...+.+.+|+|||++|+.++.. ..|++||+.+++... +..+.+.+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 36888887544 445566677789999999999999987653 489999999876543 3345566778999999997
Q ss_pred EEEE-EcCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCC
Q 002502 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (915)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~ 187 (915)
|+.. +.++ .|++||+.++ .... +..+........|+| +++.|+..+. ++ .|.++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~-~~~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK-QLTR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC-CEEE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 7644 4343 5888998876 3333 333444455778999 7877776554 33 588888876653 344445566
Q ss_pred eeEEEEEeCCCcCEEEEEECCC---eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---eEEEEeCCCc
Q 002502 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (915)
+....|+|+++ +++.++.++ .|.+||+.++... .+... .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 324 ~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 324 NASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred ccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 67889999887 677766665 7899998876543 33222 2334568999999888777654 3555553 35
Q ss_pred eeeeeeccCCccEEEEEE
Q 002502 262 RLENTLNYGLERVWAIGY 279 (915)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~ 279 (915)
+....+..+.+.+..++|
T Consensus 399 ~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceeeECCCCCCCcCCCCC
Confidence 544445444344444444
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=4e-11 Score=115.99 Aligned_cols=156 Identities=18% Similarity=0.321 Sum_probs=112.3
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCCCceEEEEe-ecCCcceEEEEEecCCCCEEEEE--ECCCcEEE
Q 002502 103 RCVAVHPTLPYVLSSSD----------DMLIKLWDWEKGWMCTQIF-EGHSHYVMQVTFNPKDTNTFASA--SLDRTIKI 169 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~l~~~--~~dg~i~i 169 (915)
..+.|+|+|.+|++-.. -|...+|.++........+ ....++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45889999988775433 1345555553322233333 23445799999999 77776654 35679999
Q ss_pred EECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC---CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEE
Q 002502 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (915)
Q Consensus 170 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~ 246 (915)
||++ ++.+..+ +...++.+.|+|+|+ ++++++. .|.|.+||.++.+.+.... | ..++.++|+|+|+++++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 9996 5555555 356778999999998 7877764 4679999999888887765 3 34789999999999998
Q ss_pred EEc------CCeEEEEeCCCceeeeee
Q 002502 247 GSE------DGTVRIWHATTYRLENTL 267 (915)
Q Consensus 247 ~~~------dg~v~iwd~~~~~~~~~~ 267 (915)
++. |+.++||+.. |+++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 864 6789999974 7665544
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.9e-10 Score=128.48 Aligned_cols=234 Identities=15% Similarity=0.063 Sum_probs=153.4
Q ss_pred eEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002502 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|...+. .+.+..+...+....|+|||++|+..+.+ ..|.+|++.+++... +....+.+....|+|+|+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 48888876554 45565677789999999999999877643 479999999876543 33334455678999999988
Q ss_pred EE-EEcCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002502 115 LS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+| .|++||+.++ .... +..+........|+| +++.++..+. +| .|.++++.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~-~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR-QLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCC-CeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 74 44444 6888899887 3333 344555566788999 7777666553 33 57778887766432 22222333
Q ss_pred eEEEEEeCCCcCEEEEEEC-CC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC---CeEEEEeCCCce
Q 002502 189 NCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~v~iwd~~~~~ 262 (915)
....|+|+++ +++..+. ++ .|.+||+.+++... +.. ........|+|+|+.++..+.+ ..|.++++. +.
T Consensus 334 ~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 334 ARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred cceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4578999987 4555443 33 58889998776533 322 1222356899999988876643 347777764 44
Q ss_pred eeeeeccCCccEEEEEEecC
Q 002502 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~s~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44445445456677777763
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=8.1e-11 Score=114.44 Aligned_cols=239 Identities=16% Similarity=0.228 Sum_probs=167.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
..-|.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3468899999999999999999999999644322 233344443 3578899998765 56777
Q ss_pred EcCCeEEEEECCCCce----------------------------------EEEE-eecCCcceEEEEEecCCCCEEEEEE
Q 002502 118 SDDMLIKLWDWEKGWM----------------------------------CTQI-FEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~~----------------------------------~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
+.|.+|++|.+..... +.++ -..|.-.|.++.++. |...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 8899999998753211 0111 124667789999997 77777765
Q ss_pred CCCcEEEEECCCCCCceEE---ecC-----CCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE----EE------
Q 002502 163 LDRTIKIWNLGSPDPNFTL---DAH-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QT------ 224 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------ 224 (915)
.|-.|.+|++.-....+.+ +++ ..-|++..|+|.... +++-.++.|+|++-|++..... ..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4788999998654433333 222 234778889887654 7888888999999999843211 11
Q ss_pred ------ecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCC-CceeeeeeccCC------------cc---EEEEEEecC
Q 002502 225 ------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYGL------------ER---VWAIGYMKS 282 (915)
Q Consensus 225 ------~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~------------~~---v~~i~~s~~ 282 (915)
+..--..|+.+.|+++|+++++-.. -+|++||+. ..+++.+++.|. .. -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112235889999999999998764 489999984 445555555442 11 245889999
Q ss_pred CCeEEEEecCCeEEEec
Q 002502 283 SRRIVIGYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i~~ 299 (915)
+..+.+|+-...+++..
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999998854
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.5e-10 Score=126.59 Aligned_cols=234 Identities=15% Similarity=0.079 Sum_probs=150.7
Q ss_pred eEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002502 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
.|.++|..... .+.+..+..++.+..|+|||++|+..+.+ ..|.+||+.+++.... ....+......|+|+|+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 67777865443 35566677789999999999999876542 3688999988765332 2223334578999999988
Q ss_pred EE-EEcCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCCCe
Q 002502 115 LS-SSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (915)
Q Consensus 115 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v 188 (915)
+. .+.+|. |+++|+.++ .... +..+........|+| +++.++..+. ++ .|.++|+.+++.. .+.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCC
Confidence 75 455664 788888876 3333 334445567889999 7777766553 34 4667787766543 332222233
Q ss_pred eEEEEEeCCCcCEEEEEE-CCC--eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC-C--eEEEEeCCCce
Q 002502 189 NCVDYFTGGDKPYLITGS-DDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-G--TVRIWHATTYR 262 (915)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-g--~v~iwd~~~~~ 262 (915)
...+|+|+++ +++..+ .++ .|.++|+.+++... +... .......|+|+|+.|+..+.+ | .+.+++. +|+
T Consensus 353 ~~~~~SpDG~--~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGR--SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCC--EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 4578999987 454443 344 45667887776432 3222 122345799999987765543 3 3777775 566
Q ss_pred eeeeeccCCccEEEEEEecC
Q 002502 263 LENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 263 ~~~~~~~~~~~v~~i~~s~~ 282 (915)
....+..+.+.+...+|+|-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66666655566777888773
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=1e-09 Score=120.73 Aligned_cols=240 Identities=12% Similarity=0.080 Sum_probs=152.4
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE---EEeCC--CeEEEEECCCCceeEEEecCCCCEEEEEEcCCC
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV---AGADD--MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~g~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
+.|.+.|...+.. +.+......+.+-+|+|||+.++ +...+ ..|.+.++.+++..... ...+......|||||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4677888655543 44555666778889999998632 33333 46888899877654332 234445678999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC--ceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEE--ECCC-CCCceE
Q 002502 112 PYVLSSSD-DM----LIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIW--NLGS-PDPNFT 180 (915)
Q Consensus 112 ~~l~~~~~-dg----~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~ 180 (915)
+.|+..+. +| .+.+|++..+ ....+....+.......+|+| |++.|+..+ .+|...+| ++.. +.....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 98886653 22 3444676642 133344433334456789999 888777655 45654444 5432 233344
Q ss_pred EecCCCCeeEEEEEeCCCcCEEEEEECC---CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc---CCeEE
Q 002502 181 LDAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVR 254 (915)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---dg~v~ 254 (915)
+......+....|+|+|+ .|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+..+. .+.|.
T Consensus 322 lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 444555677899999998 45554432 469999998887644332 3345678999999998875443 34688
Q ss_pred EEeCCCceeeeeeccCCccEEEEEEecCC
Q 002502 255 IWHATTYRLENTLNYGLERVWAIGYMKSS 283 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~s~~~ 283 (915)
++|+.+++...... ..+.+...+|+|..
T Consensus 399 ~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeec-CCCcccCceecCCC
Confidence 89988776544333 33556678888754
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3.9e-10 Score=118.26 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=156.5
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCCceeEEEEe---cCCCEEEEEEe------C--------------CCCEEEEEeCCCe
Q 002502 24 HPSEPWILASLYSGTVCIWNYQSQTMAKSFEV---TELPVRSAKFV------A--------------RKQWVVAGADDMF 80 (915)
Q Consensus 24 sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~s------~--------------~~~~l~~g~~dg~ 80 (915)
.|...++|....||.++|||...++....|.. ..+..++..|. | +-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999888777764 24556666663 1 2346788888999
Q ss_pred EEEEECCCCceeEEEe--cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 81 IRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 81 i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
|.+|+...|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.... .....+......+.+++.+| |+..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEE
Confidence 9999999999887775 79999999999999999999999999999999987 77888888888899999999 78999
Q ss_pred EEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeC-----CCcCEEEEEECCCeEEEEECC
Q 002502 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----GDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~ 217 (915)
++++ ++|++||+.+.+.+.++.+|.++|+++.|... |.. +|.+...+..+.+|-..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY-VLSSAAAERGITVWVVE 220 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce-eeeccccccceeEEEEE
Confidence 9887 79999999999999999999999999999876 331 33344455667777654
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.32 E-value=8.8e-08 Score=109.04 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=130.6
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC----C
Q 002502 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG----S 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~----~ 174 (915)
.+.|.++.|..+...++.+...|.|.+-|..+. .......-...|.+++|+| |...++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 368999999999999999999999999988875 3344445567799999999 99999999988887665420 0
Q ss_pred -------------------CCCceEEecCC---------------------CCeeEEEEEeCCCcCEEEEE-----ECCC
Q 002502 175 -------------------PDPNFTLDAHQ---------------------KGVNCVDYFTGGDKPYLITG-----SDDH 209 (915)
Q Consensus 175 -------------------~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~-----~~dg 209 (915)
|+....+.+.. ..-+.++|-.+|. |+++. ...+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCce
Confidence 01111121111 1123477765655 77773 2337
Q ss_pred eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE---cCCeEEEEeCCCceeeeee----ccCCccEEEEEEecC
Q 002502 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS---EDGTVRIWHATTYRLENTL----NYGLERVWAIGYMKS 282 (915)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~----~~~~~~v~~i~~s~~ 282 (915)
.|++||.. |..-..-....+--.+++|-|.|..+++-. .|+.|.+|. ++|-....+ ......+..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 99999966 543222222333345799999999888754 456799998 445433322 222334899999999
Q ss_pred CCeEEE---EecCCeEEEec
Q 002502 283 SRRIVI---GYDEGTIMVKI 299 (915)
Q Consensus 283 ~~~l~~---g~~dg~v~i~~ 299 (915)
+..|++ ......|++|.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCceeeeecccccceEEEEE
Confidence 999998 45555588874
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.2e-10 Score=126.66 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=147.5
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~ 82 (915)
+.+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3455677889999999999999877643 369999998886543 33344456678999999988754 4444 688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+||+.+++.. .+..+........|+|+|+.|+..+. + ..|+++++.++. ...... .........|+| +++.++
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~-~~~~~~~~~~Sp-dg~~i~ 346 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTF-VGNYNARPRLSA-DGKTLV 346 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeec-CCCCccceEECC-CCCEEE
Confidence 8899887644 34445556677899999998876664 2 357888887773 333221 122344578999 778887
Q ss_pred EEECC-C--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC-C--CeEEEEECCCCcEEEEecCCccCeE
Q 002502 160 SASLD-R--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D--HTAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~v~ 233 (915)
..+.+ + .|.++|+.+++.. .+.. ........|+|+|. .++..+. + ..+.+++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGT--MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 76643 3 4888998876543 3322 22233568999987 4544443 3 347777775 444445555556677
Q ss_pred EEEEeCC
Q 002502 234 AVCFHPE 240 (915)
Q Consensus 234 ~v~~~~~ 240 (915)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7778774
No 266
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.8e-10 Score=127.14 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=147.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCC--CeEE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADD--MFIR 82 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~d--g~i~ 82 (915)
+.+..+...+.+.+|||||++|+.+... ..|++||+.+++... +..+...+.+++|+|||+.|+.. +.+ ..|.
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 4455677779999999999999987653 479999998886543 34455667789999999988754 333 3688
Q ss_pred EEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
+|++.+++. ..+..+........|+|+++.|+.++.. + .|+++|+.++. .. .+..+........|+| +++.++
T Consensus 262 ~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~-~l~~~~~~~~~~~~sp-dg~~i~ 337 (417)
T TIGR02800 262 VMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VR-RLTFRGGYNASPSWSP-DGDLIA 337 (417)
T ss_pred EEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCCccCeEECC-CCCEEE
Confidence 999987654 3344455555678999999988876653 3 68888888763 32 3333455677889999 788888
Q ss_pred EEECCC---cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC---eEEEEECCCCcEEEEecCCccCeE
Q 002502 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVS 233 (915)
Q Consensus 160 ~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~ 233 (915)
.++.++ .|.+||+.++.. ..+.. ........|+|++. +|+..+.++ .+.+.+.. +.....+..+.+.+.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~ 412 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGR--MILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVR 412 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCC--EEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcC
Confidence 887765 789999877543 23322 22345568999887 465555443 35555543 555555544444444
Q ss_pred EEEE
Q 002502 234 AVCF 237 (915)
Q Consensus 234 ~v~~ 237 (915)
.++|
T Consensus 413 ~~~w 416 (417)
T TIGR02800 413 EPAW 416 (417)
T ss_pred CCCC
Confidence 4444
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=5.1e-10 Score=123.10 Aligned_cols=227 Identities=12% Similarity=0.082 Sum_probs=143.9
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE---EEEcC--CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-----C
Q 002502 9 RKLAQRSERVKSVDLHPSEPWIL---ASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----D 78 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la---~~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----d 78 (915)
+.++.....+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+.|+..+. +
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 34555566778889999998533 33333 358888988775433 3334555667899999999987653 2
Q ss_pred CeEEEEECCCC---ceeEEEecCCCCEEEEEEcCCCCEEEEEE-cCCe--EEEEECCCCceEEEEeecCCcceEEEEEec
Q 002502 79 MFIRVYNYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 79 g~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (915)
..+.+|++.++ +.......+.......+|+|||+.|+..+ .+|. |+++++.........+..+...+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 23444776653 33333333333456789999999888665 4564 444455422122333344445677889999
Q ss_pred CCCCEEEEEECC---CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEE-EEC--CCeEEEEECCCCcEEEEec
Q 002502 153 KDTNTFASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD--DHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 153 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~ 226 (915)
+++.|+..+.+ ..|.+||+.+++.. .+......+....|+|+++ .|+. +.. ...|.++|+.+++......
T Consensus 337 -DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~--~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 337 -DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSL--HLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 78888776543 36999999887654 3333344567899999987 4543 332 3568889988776544433
Q ss_pred CCccCeEEEEEeCCC
Q 002502 227 GHTHNVSAVCFHPEL 241 (915)
Q Consensus 227 ~~~~~v~~v~~~~~~ 241 (915)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556778888753
No 268
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.8e-08 Score=108.22 Aligned_cols=266 Identities=11% Similarity=0.170 Sum_probs=175.4
Q ss_pred EEEEEcC----CeEEEEEC--CCCceeEEE-EecCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC--c--eeEE
Q 002502 30 ILASLYS----GTVCIWNY--QSQTMAKSF-EVTELPVRSAKFVARKQWVVAGAD----DMFIRVYNYNTM--D--KVKV 94 (915)
Q Consensus 30 la~~~~d----g~v~iwd~--~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~vwd~~~~--~--~~~~ 94 (915)
+++|++. +.|.+|++ .++++...- .........++++|++++|.+... +|.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5667765 68999888 455443222 124455678999999999999876 579999988764 3 2333
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceEEEE---ee----------cCCcceEEEEEecCCCCEEEE
Q 002502 95 FEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FE----------GHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~----------~~~~~i~~~~~~p~~~~~l~~ 160 (915)
..........++++|++++|+++.. +|.|.++++.....+... .. .......++.++| +++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEE
Confidence 3334556778999999999998874 899999999873233322 11 1234567899999 7777777
Q ss_pred EEC-CCcEEEEECCCCCC-c---eEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC--CCc--EEEEecCC--
Q 002502 161 ASL-DRTIKIWNLGSPDP-N---FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKS--CVQTLEGH-- 228 (915)
Q Consensus 161 ~~~-dg~i~i~d~~~~~~-~---~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-- 228 (915)
... ...|.+|++..... + ..+ .........+.|+|+++. +.++.-.++.|.++++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 554 45799999876552 2 112 234566789999998873 34455567889999987 443 22222211
Q ss_pred ----ccCeEEEEEeCCCCEEEEEE-cCCeEEEEeCC--Cce--eeeeeccCCccEEEEEEecCCCeEEEEec-CCeEEE
Q 002502 229 ----THNVSAVCFHPELPIIITGS-EDGTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 229 ----~~~v~~v~~~~~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~~~~v~~i~~s~~~~~l~~g~~-dg~v~i 297 (915)
......+.++|+|++|+++. ..+.|.+|++. +++ .+..+.......+.++++|+|++|+++.. ++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12578899999999888765 45689999983 343 34444444455899999999999998774 456655
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.2e-08 Score=109.51 Aligned_cols=262 Identities=14% Similarity=0.136 Sum_probs=170.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEc----CCeEEEEECCCC--ce--eEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEE
Q 002502 15 SERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQ--TM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYN 85 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~----dg~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd 85 (915)
......++++|++++|.+... +|.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999998876 468999988764 33 3334334456678999999999999875 89999999
Q ss_pred CCC-CceeEE---Ee----------cCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCce-EEE---EeecCCcceE
Q 002502 86 YNT-MDKVKV---FE----------AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM-CTQ---IFEGHSHYVM 146 (915)
Q Consensus 86 ~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~---~~~~~~~~i~ 146 (915)
+.. +..... +. .......++.|+|+++++++... ...|.+|+++.... +.. ..........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 986 333222 21 12345789999999998887643 35799999986531 211 1223445578
Q ss_pred EEEEecCCCCEEEEE-ECCCcEEEEECC--CCCC--ceEEecC------CCCeeEEEEEeCCCcCEEEE-EECCCeEEEE
Q 002502 147 QVTFNPKDTNTFASA-SLDRTIKIWNLG--SPDP--NFTLDAH------QKGVNCVDYFTGGDKPYLIT-GSDDHTAKVW 214 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~-~~dg~i~i~d~~--~~~~--~~~~~~~------~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iw 214 (915)
.+.|+| +++++++. -.+++|.++++. ++.. ....... ......+.++|+++ +|.+ ....+.|.+|
T Consensus 196 h~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 196 HLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--FLYVSNRGSNSISVF 272 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--EEEEEECTTTEEEEE
T ss_pred EEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--EEEEEeccCCEEEEE
Confidence 999999 66666554 457889999987 3321 1222211 12467899999987 4544 4467889999
Q ss_pred ECC--CCc--EEEEecCCccCeEEEEEeCCCCEEEEEE-cCCeEEEEeC--CCceeeeeec-cCCccEEEEEE
Q 002502 215 DYQ--TKS--CVQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHA--TTYRLENTLN-YGLERVWAIGY 279 (915)
Q Consensus 215 d~~--~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~-~~~~~v~~i~~ 279 (915)
++. ++. .+..+.........+.++|+|++|+++. .++.|.+|++ .+|.+...-. .......||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 983 343 3344443344578999999999999887 4568888865 5676554432 23344556554
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=3.2e-08 Score=103.01 Aligned_cols=261 Identities=10% Similarity=0.064 Sum_probs=167.9
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCc
Q 002502 26 SEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMD 90 (915)
Q Consensus 26 ~~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----------dg~i~vwd~~~~~ 90 (915)
++.++++.... |+|.+.|..+++.+..+.....+- .+ ++|||+.|+++.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45556555443 899999999999999888655443 34 9999999887755 7899999999999
Q ss_pred eeEEEecCCC-------CEEEEEEcCCCCEEEEEE-c-CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 91 KVKVFEAHTD-------YIRCVAVHPTLPYVLSSS-D-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 91 ~~~~~~~~~~-------~i~~l~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
.+..+....+ ....++++|+|++|++.. . +..|.+.|+.+++....+-.+. ...-...+ ...+.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~---e~~~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTA---NDTFFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEec---CCccEEE
Confidence 9988864222 234789999999999876 3 6899999999984443332211 11112222 2222233
Q ss_pred ECCCcEEEEECCCCCCceE-----EecCCCCe-eEEEEEe-CCCcCEEEEEECCCeEEEEECCCC-----cEEEEecC--
Q 002502 162 SLDRTIKIWNLGSPDPNFT-----LDAHQKGV-NCVDYFT-GGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEG-- 227 (915)
Q Consensus 162 ~~dg~i~i~d~~~~~~~~~-----~~~~~~~v-~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-- 227 (915)
+.||......+........ +.....++ ..-.+++ ++. ++.+... |.|.+.|+... .....+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 4566655544432211111 11100000 0013455 443 5555555 99999996432 22222211
Q ss_pred -----CccCeEEEEEeCCCCEEEEEE----------cCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCC-eEEEEe-
Q 002502 228 -----HTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY- 290 (915)
Q Consensus 228 -----~~~~v~~v~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~g~- 290 (915)
..+.+.-++++|+++.+++.. ..+.|.++|..+++.+..+... ..++.++++||++ +|.+..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCC
Confidence 122344599999999888743 1247999999999999988765 6899999999999 777655
Q ss_pred cCCeEEE
Q 002502 291 DEGTIMV 297 (915)
Q Consensus 291 ~dg~v~i 297 (915)
.++.|.+
T Consensus 320 ~s~~VsV 326 (352)
T TIGR02658 320 GDKTLYI 326 (352)
T ss_pred CCCcEEE
Confidence 4566665
No 271
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=1.5e-10 Score=128.81 Aligned_cols=268 Identities=18% Similarity=0.230 Sum_probs=188.0
Q ss_pred CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeC------CCCEEEEEeCCCeEEEEECCC
Q 002502 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVA------RKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~------~~~~l~~g~~dg~i~vwd~~~ 88 (915)
+++.+..+-. ++|++|. .-.|.+||+.++..+..+.. +-.++. .+ .+.+++++..-+.+.+=....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh
Confidence 4445555443 6777765 55799999998876554432 111111 11 233455554433333222111
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEE---EEEecCCCCEEEEEECCC
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ---VTFNPKDTNTFASASLDR 165 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~---~~~~p~~~~~l~~~~~dg 165 (915)
+.. ..-.+.|....+......++.++.+..+.+||...++....+.........+ +-+++ +.-++++|+.-+
T Consensus 81 -~~~---~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 -QII---ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFG 155 (967)
T ss_pred -hhh---hhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccc
Confidence 111 1223344445555667788999999999999998875444443222222222 22344 566889999999
Q ss_pred cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE-EecCCccCeEEEEEeCCCCEE
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-TLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l 244 (915)
.|.+|+....+....+.+|.+.+..+.|+.+|. ++++.++|+++++|++.+.+... ..-+|...|..++|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999875554456889999999999999888 89999999999999999887655 55679999999999998 89
Q ss_pred EEEEcCCeEEEEeCCCceeeeeeccCC-ccEEEEEEecCCCeEEEEecCCeEEEecC
Q 002502 245 ITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (915)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~s~~~~~l~~g~~dg~v~i~~~ 300 (915)
++++.|-+.++|+.. +..+..+..|. ..+|.++..++...+++++.||.+++|..
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 999999999999744 55555776664 56999999999999999999999999853
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=5.4e-10 Score=124.01 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=143.5
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCC--eEEE
Q 002502 10 KLAQRSERVKSVDLHPSEPWILASLY-S--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIRV 83 (915)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~v 83 (915)
.+..+...+.+..|||||++|+..+. + ..|.+||+.+++... +....+.....+|+|||+.|+.. +.+| .|.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34455667889999999999987654 3 358889988876533 33233444578999999988754 5556 4888
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+|+.+++. ..+..+........|+|+|+.|+..+. + ..|+++|+.++. ..... ..........|+| +++.++.
T Consensus 291 ~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt-~~g~~~~~~~~Sp-DG~~l~~ 366 (448)
T PRK04792 291 VDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLT-FEGEQNLGGSITP-DGRSMIM 366 (448)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEe-cCCCCCcCeeECC-CCCEEEE
Confidence 89887654 344445556678899999998876654 3 357777887763 33321 1222334578999 7777776
Q ss_pred EEC-CC--cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC--eEEEEECCCCcEEEEecCCccCeEEE
Q 002502 161 ASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAV 235 (915)
Q Consensus 161 ~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v 235 (915)
.+. ++ .|.++|+.+++.. .+... .......|+|++.. ++++...++ .+.+++. +|.....+..+.+.+...
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~-I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM-VIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE-EEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 654 34 4566787776543 22222 12234579999874 333333444 3777786 466666676666677788
Q ss_pred EEeCC
Q 002502 236 CFHPE 240 (915)
Q Consensus 236 ~~~~~ 240 (915)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 88873
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=6.9e-10 Score=105.99 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=170.8
Q ss_pred CCeEEEEECCCCceeE--EE-EecCCCEEEEEEeC---CCC-EEEEEeCCCeEEEEECCCCceeEEEecCCC------CE
Q 002502 36 SGTVCIWNYQSQTMAK--SF-EVTELPVRSAKFVA---RKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTD------YI 102 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~--~~-~~~~~~v~~~~~s~---~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~------~i 102 (915)
.|.+.+|++...+... ++ ....+.+..+.|.. +|. .++-+...|.|.+|..........+++-+. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4679999987765443 22 22345677788864 455 456667789999998765444444432211 24
Q ss_pred EEEEEcCCCCEEEEEEcCCeEEEEECCCC-ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCC-CceE
Q 002502 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFT 180 (915)
Q Consensus 103 ~~l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~ 180 (915)
.++.|++.+..++++..+|.+.+-+.... -+..+..+.|.-.++...|+..+++.+.+|+.|+.+..||++.++ .+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 57899999999999999999996665544 122347889999999999998888999999999999999999443 3333
Q ss_pred -EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCccCeEEEEEeCCCC--EEEEEEcCCeEEEE
Q 002502 181 -LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRIW 256 (915)
Q Consensus 181 -~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~~--~l~~~~~dg~v~iw 256 (915)
...|..+|.++.-+|. ...++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-. +++++-.+ -.+|.
T Consensus 205 n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKIL 281 (339)
T ss_pred cceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEE
Confidence 3568889999987765 445999999999999999995 66665544 457899999999543 34444444 36777
Q ss_pred eCCCceee-----eeeccCCccEEEEEEecCCCeEEE
Q 002502 257 HATTYRLE-----NTLNYGLERVWAIGYMKSSRRIVI 288 (915)
Q Consensus 257 d~~~~~~~-----~~~~~~~~~v~~i~~s~~~~~l~~ 288 (915)
+.+..... ...+.|.+-...-.|......+++
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lAT 318 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLAT 318 (339)
T ss_pred Eecccccchheeeeccccccceeeccccccccceeee
Confidence 76554322 233344443444444333345665
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.9e-08 Score=104.62 Aligned_cols=240 Identities=13% Similarity=0.128 Sum_probs=158.7
Q ss_pred EcCCCCEEEEEEc----------CCeEEEEECCCCceeEEEEecCC-------CEEEEEEeCCCCEEEEEe-C-CCeEEE
Q 002502 23 LHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGA-D-DMFIRV 83 (915)
Q Consensus 23 ~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~g~-~-dg~i~v 83 (915)
+||||+.|+++.. +..|.+||..+.+.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 68899999999999988875332 234789999999999876 3 789999
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce-EEE---EeecCCcceE-EEEEecCCCCEE
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ---IFEGHSHYVM-QVTFNPKDTNTF 158 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~i~-~~~~~p~~~~~l 158 (915)
.|+.+++.+..+.- .+...-...+++..+ +-+.||......+....+ ... .+.....++. .-.|.+.++..+
T Consensus 133 vD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 99999999988875 223333333333322 223445544443332111 111 1111001110 003455466677
Q ss_pred EEEECCCcEEEEECCCCCC-----ceEEe-------cCCCCeeEEEEEeCCCcCEEEEEE--------CCCeEEEEECCC
Q 002502 159 ASASLDRTIKIWNLGSPDP-----NFTLD-------AHQKGVNCVDYFTGGDKPYLITGS--------DDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~-----~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~ 218 (915)
++... |+|.+.|+.+... ...+. ...+.+.-++++++++.-|++.-. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 66665 9999999654322 22211 123344559999988852222211 225899999999
Q ss_pred CcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCeEEEEeCCCceeeeee
Q 002502 219 KSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (915)
Q Consensus 219 ~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (915)
++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999988873 45789999999999 777665 5788999999999998887
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.9e-08 Score=110.15 Aligned_cols=464 Identities=14% Similarity=0.135 Sum_probs=242.6
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccC-eEEEEEeCCCCEEEEEEcCC-----eEEEEeCCCc-----
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDG-----TVRIWHATTY----- 261 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~l~~~~~dg-----~v~iwd~~~~----- 261 (915)
|++++. .++.|+.+|.|.+.+-+ -+.++.++.+... |..+....+..+|++.++|+ .|+||++..-
T Consensus 31 ~~s~~~--~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG--SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc--eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 344444 69999999999998843 5555777777777 44444444446888877765 4999997532
Q ss_pred -eee---eee--cc--CCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccc
Q 002502 262 -RLE---NTL--NY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (915)
Q Consensus 262 -~~~---~~~--~~--~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~ 333 (915)
.++ ..+ .. ...++.+++.+.+-+.+|+|..+|.|...- |.++........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~------------GDi~RDrgsr~~---------- 165 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK------------GDILRDRGSRQD---------- 165 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc------------Ccchhcccccee----------
Confidence 222 111 12 246788999999999999999999998842 222222111110
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCE-EEEEcCCcEEEEEeecccccCccceeEEEEecCCcEEEEecCCeE
Q 002502 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF-VVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKI 412 (915)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~-lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~v 412 (915)
.......+++.+++..+++. +.+++..++..|.+.... . .+
T Consensus 166 --------------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p-----------------------~~ 207 (933)
T KOG2114|consen 166 --------------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P-----------------------SL 207 (933)
T ss_pred --------------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c-----------------------ce
Confidence 01223446788888888876 555667777777554211 0 01
Q ss_pred EEeccCcceeeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEe-ccccEEEEcCCCCEEEEEeCCeEEEEEe
Q 002502 413 KIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKY 491 (915)
Q Consensus 413 ~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~ 491 (915)
++.| ..+..-..+.|++. ..-++++....+.|||.+...+-..+. +.-.-+-|...|-.++...+.+.-.
T Consensus 208 ~~ld--~~G~~lnCss~~~~----t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~--- 278 (933)
T KOG2114|consen 208 KVLD--NNGISLNCSSFSDG----TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN--- 278 (933)
T ss_pred eeec--cCCccceeeecCCC----CccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC---
Confidence 1110 00111111133332 223566666678888876544444444 3333344444343333332221110
Q ss_pred cHHHHHHhhhCCCCCCccccccceeEeEeeeeeEEeeEEecCEEEEEccCCeE-EEEECCEEeEEEecccceEEEEEEee
Q 002502 492 NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRL-NYCVGGEVTTMFHLDRPMYLLGYLAS 570 (915)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (915)
.+ ..+... .++ +-+|.-. ++. -|.. -++..... +...
T Consensus 279 -----------------~s--~s~ss~----~~i--------~~~~d~~-n~~v~ys~--------vl~~l~d~--l~~w 316 (933)
T KOG2114|consen 279 -----------------TS--LSNSSS----NRI--------FKAYDLR-NRYVLYSS--------VLEDLSDN--LIEW 316 (933)
T ss_pred -----------------cc--cCccch----hhe--------eehhhhc-CcccchHH--------hHHHHHHH--HHhc
Confidence 00 000000 000 0111111 111 1110 00000000 0011
Q ss_pred CCEEEEEecCCceEEEEecchHHHHHHHHHccCHHHHhhhcCCCCcch------HHHHHHHHHhCCChhhhhhcccCccc
Q 002502 571 QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEH------HNSVARFLESRGMIEEAIEVATDPDY 644 (915)
Q Consensus 571 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~------~~~~~~~~~~~~~~~~al~~~~~~~~ 644 (915)
+..++++..+|.+.....-...-.......+..+..|..+.++-..+. |-+.+.||-++|..+.|..
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~------- 389 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATD------- 389 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHH-------
Confidence 235556666666554332111111122222444455554443322211 2344567777777777762
Q ss_pred eeeeec-ccCCHHHHHHHHHHcCChhHHHHHHHHHHHc--------CChhhHHHHHHHcCCcchhHHHHHhcCC---HHH
Q 002502 645 RFELAI-QLGRLEVAQEIATEVQSESKWKQLGELAMST--------GKLEMAEGCMKQAMDLSGLLLLYSSLGD---AEG 712 (915)
Q Consensus 645 ~f~~~l-~l~~~~~A~~~a~~~~~~~~w~~la~~al~~--------~~~~~A~~~y~~~~d~~~l~~l~~~~g~---~~~ 712 (915)
+++ .+|.++-++-+-+. -+++.-++|+.+.+.- -+..+-..||.+.+|.++|.-.-....+ .-.
T Consensus 390 ---qYI~tI~~le~s~Vi~kf-Ldaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd 465 (933)
T KOG2114|consen 390 ---QYIETIGFLEPSEVIKKF-LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD 465 (933)
T ss_pred ---HHHHHcccCChHHHHHHh-cCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee
Confidence 222 33445554433333 4456667777765433 3455567899999999887664333220 112
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH-HCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhc
Q 002502 713 ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV-ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (915)
Q Consensus 713 ~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~-~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~ 781 (915)
++..-++....+-...|.+++...++-+-..++++ ..+.+.+|+.+-..+-++.+-+.+..|.+.|...
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h 535 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEH 535 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 55566677777777778888877777555555554 4555888888888877777777777777777543
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1e-09 Score=104.88 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=164.4
Q ss_pred CCEEEEEEcC---CCC-EEEEEEcCCeEEEEECCCCceeEEEEec---CC---CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 16 ERVKSVDLHP---SEP-WILASLYSGTVCIWNYQSQTMAKSFEVT---EL---PVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 16 ~~v~~~~~sp---~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~---~~---~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
..+..|.|+- +|. .|+-+...|.|.+|..........+.+- .. ...++.|++.+..++++..+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3456666653 444 4556667899999986544433333321 11 245788999999999999999999666
Q ss_pred CCCCce--eEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCce-EEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 86 YNTMDK--VKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 86 ~~~~~~--~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
...+.. ++..+.|.-.++...|+...+ .+.+|++|+.+..||++.... +-+....|...|.++.-+|..+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 554443 347789999999999987554 778999999999999993322 3333566888999999999889999999
Q ss_pred ECCCcEEEEECCC-CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCc-----EEEEecCCccCeEEE
Q 002502 162 SLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-----CVQTLEGHTHNVSAV 235 (915)
Q Consensus 162 ~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~v 235 (915)
+.|-.|++||.++ +++++.- ...++|..+.++|.-...+++++-.+ -.+|-+.+.+. .....+.|.+-+..-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccccceeecc
Confidence 9999999999985 4555443 35589999999997655344444333 45666665432 233445566555666
Q ss_pred EEeCCCCEEEEEE-cCCeEE-EEe
Q 002502 236 CFHPELPIIITGS-EDGTVR-IWH 257 (915)
Q Consensus 236 ~~~~~~~~l~~~~-~dg~v~-iwd 257 (915)
.|......|++++ .|+.++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 6644445677754 444433 553
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=1.2e-08 Score=112.03 Aligned_cols=253 Identities=11% Similarity=-0.001 Sum_probs=164.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-E
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-l 105 (915)
+..+++++.+|.|.-+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 56788888899999999999998877665433222222 256788899999999999999999887765332 2221 1
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcce-----EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE
Q 002502 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 180 (915)
.. .+..++.++.+|.|..||.+++.. .-........+ .+.... +..++.++.+|.+..+|..+++....
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeee
Confidence 22 245678888899999999998833 22222111111 111222 24677888889999999998876654
Q ss_pred EecCCC----C------e-eEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002502 181 LDAHQK----G------V-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 181 ~~~~~~----~------v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 249 (915)
...... . + ....+ .++ .+++++.+|.++.||..+|+.+...... ...... ..+..+++++.
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~--~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVV--DGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred eccccCCCCCchhhhhccCCccEE--ECC--EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECC
Confidence 321100 0 0 01111 122 6888888999999999999887766521 112222 24567888889
Q ss_pred CCeEEEEeCCCceeeeeeccCCc-cEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 250 DGTVRIWHATTYRLENTLNYGLE-RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~-~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+|.|..+|..+|+.+........ ...+... .+..+++++.+|.+.++
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 99999999999988776532211 1222222 35688888888888773
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.2e-11 Score=139.11 Aligned_cols=200 Identities=16% Similarity=0.276 Sum_probs=162.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
++.|-..|.+|.=||..++-++|+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+.++..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 345667899999999999999999999999999999988887764 34789999999999999999999999999987 4
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+.....+.|......+.|-. ..+++++ .++.+.+||.--......+-..|.+.++++++-| ..+.|++|+.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCc
Confidence 66677788998888888875 4566653 5689999996532122222378999999999999 8999999999999
Q ss_pred EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec
Q 002502 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
|++||++..+...+++. +. .+.++++|+..|.++||++.....+.++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh---hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999988776665543 22 23389999999999999998766666554
No 279
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.4e-09 Score=112.46 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=149.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeEEEec---CCCCEEEEEEc--------------------CCCCEEEEEEcCCeE
Q 002502 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVH--------------------PTLPYVLSSSDDMLI 123 (915)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s--------------------~~~~~l~~~~~dg~i 123 (915)
|-..++|..+.||.+++|+..+++....|.. -++.-.+..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766642 23334444442 233467888899999
Q ss_pred EEEECCCCceEEEEe--ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCE
Q 002502 124 KLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 124 ~iwd~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
.+|+...+ .+...+ ..|.+.|.++.++. +-..|.+++.|+.+..|+......+.........+.+++++|++. .
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--~ 158 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--I 158 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--E
Confidence 99999988 444444 47899999999987 778999999999999999999988888888899999999999976 6
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCC-----CCEEEEE-EcCCeEEEEeCC
Q 002502 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LPIIITG-SEDGTVRIWHAT 259 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-----~~~l~~~-~~dg~v~iwd~~ 259 (915)
+++++ +.|++||+.+++.+..|.+|.++|.++.|.-+ |.+++++ ..+..+.+|-+.
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 77766 68999999999999999999999999999887 6666654 334456666543
No 280
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=1.6e-09 Score=115.43 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=112.7
Q ss_pred eeeeecccCCHHHHHHHHHHcCChhH----------------HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHH---
Q 002502 645 RFELAIQLGRLEVAQEIATEVQSESK----------------WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYS--- 705 (915)
Q Consensus 645 ~f~~~l~l~~~~~A~~~a~~~~~~~~----------------w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~--- 705 (915)
..-|+-+|.+|++|..+|+...+|.. =...|+.-++.|+--.|+..|.+++-..+++++..
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHH
Confidence 34778899999999999987776542 12345555666777778888888888877776544
Q ss_pred -hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcC
Q 002502 706 -SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN 782 (915)
Q Consensus 706 -~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~ 782 (915)
.+.|-+.++.++....+...+..|+.+|..+.++++|+++|.+.+.+-+|+++||--.|.++-.+.+.|..+|...+
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~ 720 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG 720 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH
Confidence 25566677788888888888999999999999999999999999999999999999999999999999999986544
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=1.3e-08 Score=111.66 Aligned_cols=256 Identities=12% Similarity=0.050 Sum_probs=167.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE--
Q 002502 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-- 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~-- 103 (915)
++..+++++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 46678888889999999999999887665332 22221111 345778888899999999999998887764332211
Q ss_pred ---EEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCC---c---c---e-EEEEEecCCCCEEEEEECCCcEEEE
Q 002502 104 ---CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---Y---V-MQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 104 ---~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~---i-~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+.... +..++.++.+|.+..+|..++...-..-.... . . + .+..+ .+..+++++.+|.+..+
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEE
Confidence 11122 24678888889999999988843322111100 0 0 0 11112 24578888889999999
Q ss_pred ECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEc
Q 002502 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~ 249 (915)
|..+++........ ....... .++ .+++++.+|.+..+|..+++.+........ ...+... .+..|++++.
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 99998877655421 1122222 233 588888999999999999988776532222 2222222 3568899999
Q ss_pred CCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+|.|+++|..+|+.+..+..+...++.--...+ ..|++++.||.++.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 999999999999999888766544333222233 45888999998865
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=4.6e-09 Score=102.64 Aligned_cols=247 Identities=14% Similarity=0.192 Sum_probs=180.5
Q ss_pred eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEE
Q 002502 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (915)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd-~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iw 126 (915)
++..+++|...|+....-|...-+++.+.|.+++||- .+.++.-..+ ...+.+++++.+++....|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4556778888888888888888899999999999994 4445543333 2446789999999999999999999999988
Q ss_pred ECCCC---ceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEE
Q 002502 127 DWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (915)
Q Consensus 127 d~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (915)
.+... ....+....|..+++.+-|+- ....+++.+.|..+.---.+++..+-.+.- ...-.++.+.-. +..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~----~~f 169 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL----YAF 169 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE----EEE
Confidence 76532 133445567899999999987 678888888887764333333332211110 000011111100 344
Q ss_pred EEECCCeEEEEEC--CCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCCccEEEEEEe
Q 002502 204 TGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (915)
Q Consensus 204 ~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~s 280 (915)
.|...|.|..-.+ ..-.++.++.+|.+.+++++|.|...++.+|..|..+.+||+.-.+ ....+.++...|..++.-
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 5555566555443 3456788999999999999999999999999999999999987554 445677888899999998
Q ss_pred cCCCeEEEEecCCeEEEecCC
Q 002502 281 KSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 281 ~~~~~l~~g~~dg~v~i~~~~ 301 (915)
+--+.+.+++.||.|.+|.-.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhheeeeeccCCCeEEEEecc
Confidence 889999999999999998533
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=2.6e-07 Score=94.24 Aligned_cols=215 Identities=10% Similarity=0.139 Sum_probs=157.0
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCceeEEEEec-------CC-----CEEEEE-EeC-CCCEEEEEeCCCeEEEEECCC
Q 002502 23 LHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-------EL-----PVRSAK-FVA-RKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 23 ~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-------~~-----~v~~~~-~s~-~~~~l~~g~~dg~i~vwd~~~ 88 (915)
.+.||+.++.. ..|.|.+||..+..+.+ +... +. +..-+. |++ +|.+++..|. |...+.+...
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 35688877764 47899999977654332 2211 11 111122 333 6888888765 6777777655
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+-.++. +|.+.|+...+..++.-++.|..|| .+-|+|.+++ . ...+.+.-+.|.++..+| ++..++++.....|
T Consensus 351 ~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el 425 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-E-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFEL 425 (668)
T ss_pred CeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-e-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEE
Confidence 544433 4677799999988888899999999 8999999987 3 344455667799999999 89999999999999
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC----eEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002502 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH----TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 243 (915)
.+.|+.+++....-+...+-|+.+.|+|++. +++-+.-+| .|+++|+.+++....-. ....=.+-+|.|++++
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr--~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry 502 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSR--WIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCce--eEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence 9999999987766677788899999999987 788776654 68999998776544333 3333456789999998
Q ss_pred EEEEE
Q 002502 244 IITGS 248 (915)
Q Consensus 244 l~~~~ 248 (915)
|.--+
T Consensus 503 LYfLs 507 (668)
T COG4946 503 LYFLS 507 (668)
T ss_pred EEEEe
Confidence 77654
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=130.62 Aligned_cols=196 Identities=17% Similarity=0.310 Sum_probs=160.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceE
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (915)
+-..|.++.=+|...+-++|+.||.|++|....++.+..++ .....++.+.|+.+|+.+.++..||.+.+|.... ++
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 44568888889999999999999999999999998888775 3347899999999999999999999999999873 46
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEE---CCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCe
Q 002502 135 TQIFEGHSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 135 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
......|......+.|-. ..+++++ .++.+.+||..-.. .-..-..|.++++++++.|... ++++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCCcCc
Confidence 666778888888888863 5666654 47889999964322 1222278999999999999877 8999999999
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeec
Q 002502 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
|++||++..+.++.++. ++ ...++++|+..|.++||++....++.++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998777766653 44 45689999999999999999887776654
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.2e-07 Score=115.10 Aligned_cols=238 Identities=11% Similarity=0.142 Sum_probs=158.6
Q ss_pred EEEEEcCCCCEEE-EEEcCCeEEEEECCCCceeEEEEe-c-------------CCCEEEEEEeCCCCEEEEEeC-CCeEE
Q 002502 19 KSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEV-T-------------ELPVRSAKFVARKQWVVAGAD-DMFIR 82 (915)
Q Consensus 19 ~~~~~sp~~~~la-~~~~dg~v~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~~g~~-dg~i~ 82 (915)
..+++++++..|+ +-..++.|++||.. +..+..+.. . -.....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688988655444 44557889999965 544444332 1 113578999999887766654 57899
Q ss_pred EEECCCCceeEEEecC-----------------CCCEEEEEEcCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecC---
Q 002502 83 VYNYNTMDKVKVFEAH-----------------TDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--- 141 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 141 (915)
++|..++. +.++.+. -.....++|+|+ +..+++.+.++.|++||..++. .. .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EE-EEecCCcc
Confidence 99987754 3333210 113467999994 5555666778899999998763 22 22111
Q ss_pred ------------CcceEEEEEecCCCC-EEEEEECCCcEEEEECCCCCCceEEec-------------C--------CCC
Q 002502 142 ------------SHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTLDA-------------H--------QKG 187 (915)
Q Consensus 142 ------------~~~i~~~~~~p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~--------~~~ 187 (915)
-.....++++| +++ ++++-+.++.|++||+.++.......+ . -..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 12346789999 665 566666779999999986543211100 0 112
Q ss_pred eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec-------------CCccCeEEEEEeCCCCEEEEEEcCCeEE
Q 002502 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------GHTHNVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~v~~~~~~~~l~~~~~dg~v~ 254 (915)
...++++++|+ ++++-+.++.|++||..++....... +.......++++++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCc--EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 35788888876 77888889999999998766543221 1122467899999999888888899999
Q ss_pred EEeCCCcee
Q 002502 255 IWHATTYRL 263 (915)
Q Consensus 255 iwd~~~~~~ 263 (915)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=3.6e-08 Score=93.14 Aligned_cols=238 Identities=12% Similarity=0.002 Sum_probs=161.2
Q ss_pred EEEEcC-----CCCEEEEEEcCCeEEEEECCCCce-eEEEEecCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcee
Q 002502 20 SVDLHP-----SEPWILASLYSGTVCIWNYQSQTM-AKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 20 ~~~~sp-----~~~~la~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
.|.|-| ...+||.|+..|...+|...+.+. .+....|...|.-+.=.. ....+..++.|.++++.++..+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455666 234799999999999999886543 333334444333222111 2234667778888888887654333
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce-EEE-EeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
.......-.+.++.++++++++++.++...|..|.++.... ... ........-.+..|+. ....||+++.||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEE
Confidence 22221112378999999999999999999999999875422 222 2233444457788988 77899999999999999
Q ss_pred ECCCCCCc-----eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC-------Cc-cCeEEEEE
Q 002502 171 NLGSPDPN-----FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HT-HNVSAVCF 237 (915)
Q Consensus 171 d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~-~~v~~v~~ 237 (915)
|++..... .+-..|.+.+..+.|++.|.-.+|+..-.-+.+.+.|++++...+.+.. |. ..|...+|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 99875432 1224588899999999988766777777778999999999876554432 22 23777788
Q ss_pred eCCCCEEEEEEcCCeEEEEeCC
Q 002502 238 HPELPIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~ 259 (915)
+.++..+.+.+++ .+.=|++.
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cCCCcccccccch-hhheeecc
Confidence 8777766666654 45555544
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=6.8e-09 Score=99.76 Aligned_cols=240 Identities=19% Similarity=0.369 Sum_probs=166.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-----eeEEEEecCC------------CEEEEEEeCCC--CEEEE
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTEL------------PVRSAKFVARK--QWVVA 74 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~s~~~--~~l~~ 74 (915)
..+.|+++.|...|.||++|...|.|.+|.-.... ....|++|.. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999854322 2233555542 57888998765 34667
Q ss_pred EeCCCeEEEEECCCC------------------c-------------------ee-----EEE-ecCCCCEEEEEEcCCC
Q 002502 75 GADDMFIRVYNYNTM------------------D-------------------KV-----KVF-EAHTDYIRCVAVHPTL 111 (915)
Q Consensus 75 g~~dg~i~vwd~~~~------------------~-------------------~~-----~~~-~~~~~~i~~l~~s~~~ 111 (915)
.+.|.+|++|.+... + .+ +.. ..|+-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999976321 0 00 111 2566678999999988
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEE--eecCC-----cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC------c
Q 002502 112 PYVLSSSDDMLIKLWDWEKGWMCTQI--FEGHS-----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------N 178 (915)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~-----~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~------~ 178 (915)
..++++ +|-.|.+|+++-......+ .++|. .-|++..|+|...+.|.-.+..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 5678999998743222222 23342 35889999998888999999999999999984321 1
Q ss_pred eE----------EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecCCcc------------Ce---
Q 002502 179 FT----------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTH------------NV--- 232 (915)
Q Consensus 179 ~~----------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v--- 232 (915)
.. +......|..+.|+++|+ |+++ -+--+|++||.+. ..++.++.-|.. .|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIls-RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILS-RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCc--EEEE-eccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 11 112234677889999887 5554 4457899999986 456777644321 22
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEe
Q 002502 233 SAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 233 ~~v~~~~~~~~l~~~~~dg~v~iwd 257 (915)
..+.|+.+.+.+++|+..+..-+|-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3477888888999999888777775
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-08 Score=97.28 Aligned_cols=238 Identities=18% Similarity=0.290 Sum_probs=162.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----eeEEEecCC------------CCEEEEEEcCCCC--EEEEE
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~~~--~l~~~ 117 (915)
...|+++.|...|.+|++|...|.|.+|.-+... ....|++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754322 122344553 2477888876543 57777
Q ss_pred EcCCeEEEEECCCCc-----------------------------------------eEEEEe-ecCCcceEEEEEecCCC
Q 002502 118 SDDMLIKLWDWEKGW-----------------------------------------MCTQIF-EGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~-----------------------------------------~~~~~~-~~~~~~i~~~~~~p~~~ 155 (915)
+.|.+|++|.+.... .+.+++ ..|.-.|.++.++. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999875320 001111 34666688899987 66
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEE---ecCC-----CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE------
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFTL---DAHQ-----KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (915)
..++++ .|-.|.+|++.-....+.+ ++|. .-|++..|+|.... ++.-.++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCchh
Confidence 666554 5788999998655443333 2232 34678888887654 677777889999999984221
Q ss_pred EE--E--------ecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-eeeeeccCC------------ccE---E
Q 002502 222 VQ--T--------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL------------ERV---W 275 (915)
Q Consensus 222 ~~--~--------~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~------------~~v---~ 275 (915)
+. + +.+-...|+.+.|+++|++|++-+.- +|+|||++..+ ++.++..|. ..| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 10 1 11223468889999999999987654 89999987644 555554331 222 3
Q ss_pred EEEEecCCCeEEEEecCCeEEEe
Q 002502 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 276 ~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
.+.||.+.+.+.+|+......++
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 57889899999999887777664
No 289
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=1.7e-06 Score=86.37 Aligned_cols=210 Identities=11% Similarity=0.126 Sum_probs=135.5
Q ss_pred CCeEEEEECCCC--cee-EEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC--CceeE--EEecCCCCEEEE
Q 002502 36 SGTVCIWNYQSQ--TMA-KSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT--MDKVK--VFEAHTDYIRCV 105 (915)
Q Consensus 36 dg~v~iwd~~~~--~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l 105 (915)
+.-|++|++.+. ++. ..+-...+.++-++|+|+++.|.++.. +|.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 456999998743 221 112235667889999999999998855 46787777764 44322 222223344889
Q ss_pred EEcCCCCEEEEEEc-CCeEEEEECCCCceEEEE--eecCCcc----------eEEEEEecCCCCEEEEEEC-CCcEEEEE
Q 002502 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI--FEGHSHY----------VMQVTFNPKDTNTFASASL-DRTIKIWN 171 (915)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~----------i~~~~~~p~~~~~l~~~~~-dg~i~i~d 171 (915)
++++++++++++.. .|.|.++-++....+... ...|... +.+..+.| +++++++... --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998865 488999988652122211 1223333 77888999 8888887765 24689999
Q ss_pred CCCCCCceEE---ecCCCCeeEEEEEeCCCcCEEEE-EECCCeEEEEECCCC-cEEEEecC---------CccCeEEEEE
Q 002502 172 LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTK-SCVQTLEG---------HTHNVSAVCF 237 (915)
Q Consensus 172 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~v~~ 237 (915)
+..++....- -....+...|.|+|+++ +..+ .--+++|.+|.+... ..+..++. .......|.+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k--~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGK--YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCc--EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 9876543211 13455678999999998 4433 445889999998763 22222221 1234566777
Q ss_pred eCCCCEEEEEE
Q 002502 238 HPELPIIITGS 248 (915)
Q Consensus 238 ~~~~~~l~~~~ 248 (915)
+|+|++|.++.
T Consensus 252 s~dGrFLYasN 262 (346)
T COG2706 252 SPDGRFLYASN 262 (346)
T ss_pred CCCCCEEEEec
Confidence 88887777653
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=5.7e-07 Score=86.98 Aligned_cols=236 Identities=11% Similarity=0.147 Sum_probs=141.0
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCC--ceeEEEEecC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTE---LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~~~~---~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.++.+++|+.||+.. |..|.|-..++. ..+.....++ ..-+-++||||+..||.+...|+|++||+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 367889999888875 778888765543 3333333332 3467899999999999999999999999875 33333
Q ss_pred Eec-------CCCCEEEEEEcCCC------CEEEEEEcCCeEEEEECCC----CceEEEEe--e-cCCcceEEEEEecCC
Q 002502 95 FEA-------HTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWEK----GWMCTQIF--E-GHSHYVMQVTFNPKD 154 (915)
Q Consensus 95 ~~~-------~~~~i~~l~~s~~~------~~l~~~~~dg~i~iwd~~~----~~~~~~~~--~-~~~~~i~~~~~~p~~ 154 (915)
+.. -...|..|.|.+.. ..|++-..+|.++-|-+.. +......+ . .+...|.++.|+| .
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-K 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-C
Confidence 332 12457777776532 1466667788887776532 11222222 2 2467899999999 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE-EEEECCC------eEEEEECCCCcEEEEecC
Q 002502 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL-ITGSDDH------TAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg------~i~iwd~~~~~~~~~~~~ 227 (915)
.++|++|+.... ..+. -.....++++-....+... +. ++...++ +..+|.+-+.+.......
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py-yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY-YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc-EEEccccCccccccccccceeeccceeeeecccc
Confidence 777777765322 0000 0112222222222211111 11 1111121 112333222221111122
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc
Q 002502 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 228 ~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
....|..+..||||..|++...+|.|.+|++.+-++......
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 456799999999999999999999999999988776665543
No 291
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=2.3e-06 Score=80.90 Aligned_cols=189 Identities=12% Similarity=0.005 Sum_probs=117.8
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
..+++.|+..+.+.--|..+|+++..-. ...++.+-+.- -|++++.|+..|.+++.+.+||.+...+..-..--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788889999999999998775432 23334433333 577899999999999999999988887764332223345
Q ss_pred EcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe--cC
Q 002502 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AH 184 (915)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~ 184 (915)
..+++..+..|+.|++.+..|.++. .+....+-......+-+..| ....|..+...|.+.--..+.... .++- ..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~ 177 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSS-TEFWAATR 177 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCc-ceehhhhc
Confidence 6778899999999999999999886 34433333333344555666 344455555566655544433311 1111 11
Q ss_pred CCCeeE--EEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec
Q 002502 185 QKGVNC--VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 185 ~~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
.+++.. ++. +. .+..+.-||.+.-+| ..|+.+..+.
T Consensus 178 ~~PiF~splcv---~~--sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 178 FGPIFASPLCV---GS--SVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred CCccccCceec---cc--eEEEEEeccEEEEEc-CCCcEEEeec
Confidence 223221 111 11 356666677777776 5566665443
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1e-07 Score=104.08 Aligned_cols=199 Identities=10% Similarity=-0.045 Sum_probs=127.1
Q ss_pred CCEEEEEEcCCCCE-EEEEEc---CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCC
Q 002502 16 ERVKSVDLHPSEPW-ILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT 88 (915)
Q Consensus 16 ~~v~~~~~sp~~~~-la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~ 88 (915)
+.+....|||||+. ++..+. +..|.++|+.+++..... ...+......|+|||+.|+.... +..|.++++.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 36788999999985 665444 356999999888664433 35566777899999998875533 35788889887
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECC-
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD- 164 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d- 164 (915)
++.. .+..+........|+|||+.|+..+.. | .|.++|+.++. ..+..... .. ...|+| +++.++..+..
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g-~~--~~~~SP-DG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHG-KN--NSSVST-YKNYIVYSSRET 340 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCC-Cc--CceECC-CCCEEEEEEcCC
Confidence 7643 444344334456899999988876643 2 68888988773 33332211 11 248999 77777766543
Q ss_pred --------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC-CC--eEEEEECCCCcEEEEec
Q 002502 165 --------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 165 --------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~ 226 (915)
..|.+.|+.++.. ..+... .......|+|+|.. ++.... .+ .+.++++. |.....+.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~--I~f~~~~~~~~~L~~~~l~-g~~~~~l~ 408 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGS--IMFIKYLGNQSALGIIRLN-YNKSFLFP 408 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCE--EEEEEccCCcEEEEEEecC-CCeeEEee
Confidence 2678888877754 333332 23346889999984 433332 22 36666765 44333343
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.2e-07 Score=99.33 Aligned_cols=210 Identities=15% Similarity=0.029 Sum_probs=132.0
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCE-EEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW-VVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
..|.+-|.... ..+.+.... ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35666665433 334344333 7889999999985 554433 3579999998887655443 455567788999998
Q ss_pred EEEEEE-c--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CC--cEEEEECCCCCCceEEecCCC
Q 002502 113 YVLSSS-D--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 113 ~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~ 186 (915)
.|+... . +..|.++|+.++ ...+. ..+........|+| |++.++..+. .+ .|.+.|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~~~L-T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TLTQI-TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cEEEc-ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 776543 2 357888898877 33333 33333344568999 7777766653 23 588888877765333221 11
Q ss_pred CeeEEEEEeCCCcCEEEEEECC---------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC---eEE
Q 002502 187 GVNCVDYFTGGDKPYLITGSDD---------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVR 254 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg---~v~ 254 (915)
....|+|+|+. ++..... ..|.+.|+.++... .+... .......|+|||+.|+..+..+ .+.
T Consensus 322 --~~~~~SPDG~~--Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 322 --NNSSVSTYKNY--IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred --cCceECCCCCE--EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 12489999984 5444332 36888898877643 33322 2233588999999877655432 366
Q ss_pred EEeCC
Q 002502 255 IWHAT 259 (915)
Q Consensus 255 iwd~~ 259 (915)
+.++.
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 66654
No 294
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.8e-09 Score=111.26 Aligned_cols=278 Identities=13% Similarity=0.163 Sum_probs=189.2
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC-------ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeE
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (915)
..+.||+..|+.++--.+.+-+++++.|.+|++|.++.. .+..+++.|+.+|..+.|-.+-++++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 467899999999988888888999999999999998642 2455677899999999999998887764 7889
Q ss_pred EEEECCCCceeEEEe---cC--CCCEEEEEEcCCCCEEE-EEEcCCeEEEEECCCCceEEEEe-----ecCCcceEEEEE
Q 002502 82 RVYNYNTMDKVKVFE---AH--TDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTF 150 (915)
Q Consensus 82 ~vwd~~~~~~~~~~~---~~--~~~i~~l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~ 150 (915)
.+||.--++.+..+. .| .+.|.|+.- -+...++ .++...+|+++|.+.. .....+ .+.+..+.+++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEeccc-Ccchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEe
Confidence 999987776655332 12 223433321 1334444 4477899999999876 222222 233456889999
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEE-EECCCCcEEEEecCCc
Q 002502 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV-WDYQTKSCVQTLEGHT 229 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~ 229 (915)
.| .++.++.+-.+|.|.+.|.++|+.+............++- |... .++....|.++.+ |..-+|....+.+...
T Consensus 885 a~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq--~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 885 AD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQ--ALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred cc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhH--HHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 88 8999999999999999999999877666554444433332 2222 5777777888888 8766666555544333
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce-----eeeeec--cCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-----LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 230 ~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~--~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
.+..- .-.-|+.+++......+.+|--. +. .+..+. ...+..++++.-|-..-+..|...|.|.+
T Consensus 961 epahf--lqsvgpSLV~a~~Gn~lgVYad~-a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 961 EPAHF--LQSVGPSLVTAQNGNILGVYADS-AELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhh--hhccCceeEEeccCcEEEEEecc-hhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 32211 11235667777766677777421 11 111111 12356788888888888888888888765
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.5e-09 Score=110.13 Aligned_cols=241 Identities=13% Similarity=0.166 Sum_probs=167.3
Q ss_pred eEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002502 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
+..+.+|...|+.++-..+.+-+++++.|++|++|.++. ..+..++..|+.+|..+.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778988999988888888899999999999999863 23567778999999999999998887765 788
Q ss_pred EEEEECCCCceEEEEeec-CCcceEEEEEecC-CCCEEE-EEECCCcEEEEECCCCCCceEEe-----cCCCCeeEEEEE
Q 002502 123 IKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPK-DTNTFA-SASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDYF 194 (915)
Q Consensus 123 i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~-~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~ 194 (915)
|.+||.--++...+.... ..+.+..+..-|. +...+. .++...+|+++|.+...-...++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999997766333322221 1122222332231 333444 44778999999999877655543 334557899998
Q ss_pred eCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEE-EeCCCceeeeeeccCCcc
Q 002502 195 TGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI-WHATTYRLENTLNYGLER 273 (915)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~ 273 (915)
+.|+ .++++-.+|.|.+.|.++|+.+..++...-....++ .|..+.++....|.++.+ |....+....+.+.+..+
T Consensus 886 ~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 886 DKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 8888 699999999999999999999888876555554444 344467777777888888 987777766555544332
Q ss_pred EEEEEEecCCCeEEEEecCCeEEE
Q 002502 274 VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 274 v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
..-+ ..-|..+++......+.+
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEE
Confidence 2111 112445665555555554
No 296
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3e-06 Score=84.70 Aligned_cols=250 Identities=12% Similarity=0.143 Sum_probs=164.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCC--Ccee--EEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEE
Q 002502 12 AQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQS--QTMA--KSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRV 83 (915)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~---dg~v~iwd~~~--~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~v 83 (915)
-.+.+.++-|+|+|++++|.++.. .|.|.-|.++. |.+. ........+-+.++++++|++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 356778899999999999998765 46787777664 5432 222223445588999999999999876 689999
Q ss_pred EECCC-CceeE--EEecCCCC----------EEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceEEEE---eecCCcceE
Q 002502 84 YNYNT-MDKVK--VFEAHTDY----------IRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FEGHSHYVM 146 (915)
Q Consensus 84 wd~~~-~~~~~--~~~~~~~~----------i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~~i~ 146 (915)
+-++. |.... .+-.|.+. +.+..+.|++++|++..- --.|.+|++..+. +... ...-.....
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPR 194 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPR 194 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc-cccccccccCCCCCcc
Confidence 98865 33221 22234444 888999999999988753 2369999998662 2221 112334567
Q ss_pred EEEEecCCCCEEEEEE-CCCcEEEEECCCC-CCceEEe---------cCCCCeeEEEEEeCCCcCEEEEEEC-CCeEEEE
Q 002502 147 QVTFNPKDTNTFASAS-LDRTIKIWNLGSP-DPNFTLD---------AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVW 214 (915)
Q Consensus 147 ~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iw 214 (915)
.+.|+| ++.+..+.+ .+++|.+|..+.. .....++ ........+.++++|+ +|.++.. ...|.+|
T Consensus 195 Hi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--FLYasNRg~dsI~~f 271 (346)
T COG2706 195 HIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--FLYASNRGHDSIAVF 271 (346)
T ss_pred eEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--EEEEecCCCCeEEEE
Confidence 899999 777766554 5899999998764 1122221 1233456777888887 6665543 3467777
Q ss_pred ECCC--CcE--EEEecCCccCeEEEEEeCCCCEEEEEEcCC-eEEEEeC--CCceeee
Q 002502 215 DYQT--KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHA--TTYRLEN 265 (915)
Q Consensus 215 d~~~--~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-~v~iwd~--~~~~~~~ 265 (915)
.+.. ++. +.....+........++|.|++|+++..++ .|.+|.. .+|++-.
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 6653 322 222233444467899999999999887654 5777754 4566543
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=1.3e-08 Score=102.12 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=120.8
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc----eeEEEEecCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 002502 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTM 89 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~~~ 89 (915)
.+..+..+|.+++||++..+....++++.... +...... ...-+++.|..+...+.++.. ...+.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556678899999999888777777765543 2222322 233455666666665555544 445666665553
Q ss_pred ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE
Q 002502 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 90 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
.. ..+-+|-+.+..++|+||+++|+++..|..|++-.............||+..|..++..+ +..|++++.|++|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 33 334479999999999999999999999999999888876566667789999999999985 667999999999999
Q ss_pred EECCCCCCceEEe
Q 002502 170 WNLGSPDPNFTLD 182 (915)
Q Consensus 170 ~d~~~~~~~~~~~ 182 (915)
||+.+++...++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998876553
No 298
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.95 E-value=9.2e-07 Score=107.56 Aligned_cols=235 Identities=10% Similarity=0.088 Sum_probs=157.8
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEECCCCceeEEEec--------------CCCCEEEEEEcCCCCEEEEEEc-CCeEE
Q 002502 61 RSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKVKVFEA--------------HTDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (915)
Q Consensus 61 ~~~~~s~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~~~~l~~~~~-dg~i~ 124 (915)
..++++++ +..+++-+.++.|++||.. ++.+..+.. +-.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788875 5556666678899999976 454444432 1123578999998887766654 57799
Q ss_pred EEECCCCceEEEEeecC-----------------CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec----
Q 002502 125 LWDWEKGWMCTQIFEGH-----------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---- 183 (915)
Q Consensus 125 iwd~~~~~~~~~~~~~~-----------------~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 183 (915)
++|..++ ... ++.+. -.....++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~-~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNE-TVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCC-EEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876 322 22110 1124678999856667777778899999998765422 2211
Q ss_pred -----------CCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC---------------------CccC
Q 002502 184 -----------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---------------------HTHN 231 (915)
Q Consensus 184 -----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~ 231 (915)
.-.....++++|+++. ++++-+.++.|++||+.++.......+ ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1123467899998764 455566679999999987653211100 0112
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc-------------CCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 232 VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 232 v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
...++++++|.++++-+.++.|++||..++........ .......++++++|+.+++.+.++.|+++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 46889999999888888899999999887765433221 12356789999999988888888998886
Q ss_pred cC
Q 002502 299 IG 300 (915)
Q Consensus 299 ~~ 300 (915)
..
T Consensus 886 d~ 887 (1057)
T PLN02919 886 DL 887 (1057)
T ss_pred EC
Confidence 43
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=7.8e-09 Score=110.49 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=194.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC-CceeEEEEe-cCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCC--
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT-- 88 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~~-- 88 (915)
.+++.++..+|.|+-+|.++.-| +.|-|+.. +...+-+.. ..-.|-...|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45688899999999999888776 45556544 333333331 12346778888753 3344444445566898753
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 89 -MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
...-..+.+|...|+.+.|+|..+ .+++++.|-.+..||+++.......+..-...-..+.|+-.+++.+++. ....
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND 181 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCc
Confidence 223345678999999999999775 6789999999999999987666666665556678899998777777664 4577
Q ss_pred EEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE-EEecCCccCeEEEEEeCCCCEE
Q 002502 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-QTLEGHTHNVSAVCFHPELPII 244 (915)
Q Consensus 167 i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l 244 (915)
|.+||++.+ .+...+++|-..|+.+.|...-.. .+.+.+.||+|+.||....... ........+|..-++.|-|.-.
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 999999865 466778888888888888754332 5889999999999998753321 1122245567777777755422
Q ss_pred EEE--EcCCeEEEEeC---------CC-ceeeeeeccCCccEEEEEEecCCC----------eEEEEecCCeEEEec
Q 002502 245 ITG--SEDGTVRIWHA---------TT-YRLENTLNYGLERVWAIGYMKSSR----------RIVIGYDEGTIMVKI 299 (915)
Q Consensus 245 ~~~--~~dg~v~iwd~---------~~-~~~~~~~~~~~~~v~~i~~s~~~~----------~l~~g~~dg~v~i~~ 299 (915)
++- -.+..+.+++. .+ .+.+.++.+|...|....|...+. .|++-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 221 11224444432 22 346788888888877766655433 588999999999984
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=7.2e-10 Score=120.34 Aligned_cols=266 Identities=14% Similarity=0.183 Sum_probs=186.8
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i 81 (915)
+|...+.+..|....+|++||-+.+.|++|+..|.|++|++.+|.......+|.++|+-+.-+.+|..+++.+.- -..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 566778889999999999999999999999999999999999999999999999999999999999988876543 357
Q ss_pred EEEECCC-CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC---CcceEEEEEecCCCCE
Q 002502 82 RVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH---SHYVMQVTFNPKDTNT 157 (915)
Q Consensus 82 ~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~~ 157 (915)
.+|++.+ +...++|.. -.++.|+.....-+.|+......+||+.++..+...+.+. .-.-.+..|+| +..+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccce
Confidence 7899863 445555542 3578888776655666666678999999985554434322 22236778999 5544
Q ss_pred EEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEE
Q 002502 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (915)
Q Consensus 158 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 237 (915)
++ .|| .+||.+..+.+..+...... ..-.|+|+|.. +++.+ .|||+++.+.++.+.... -..+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~e--VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNE--VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCce--EEeec-----hhhhhHHHHHHhcCcccc--ceEEEe
Confidence 44 455 47999988777666543322 23358888874 55554 489999988777665433 356778
Q ss_pred eCCCCEEEEEE--cC---------------CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEe
Q 002502 238 HPELPIIITGS--ED---------------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (915)
Q Consensus 238 ~~~~~~l~~~~--~d---------------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~ 290 (915)
+..|..++..- .| ...+-++..+++.+.++... ..+..+|-+|...++++-.
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 88887554332 00 12444555555566666544 4566677777777666543
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=3.1e-06 Score=86.53 Aligned_cols=218 Identities=10% Similarity=0.071 Sum_probs=147.1
Q ss_pred EEEEeC-CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEc-CCCCEEEEEEcCCeEEEEECCCCceEEEEee
Q 002502 62 SAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH-PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (915)
Q Consensus 62 ~~~~s~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (915)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..|+++...+ +.++|+.++ .......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC-cEEEEee
Confidence 578998 66666666678999999998865533 33222 7778888 55 5666666654 566698887 3333333
Q ss_pred c-----CCcceEEEEEecCCCCEEEEEECC--------CcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 140 G-----HSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 140 ~-----~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
. .......+++.| ++++.++.... |.|..++.. ++. ..+...-...+.++|+|+++. ++++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~-lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKT-LYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSE-EEEEET
T ss_pred ccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchh-eeeccc
Confidence 2 346688999999 78877765543 557777776 333 333334556789999999873 344666
Q ss_pred CCCeEEEEECCCC-c------EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEE
Q 002502 207 DDHTAKVWDYQTK-S------CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (915)
Q Consensus 207 ~dg~i~iwd~~~~-~------~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (915)
..+.|..+++... . ....+....+..-.+++..+|++.++....+.|.+++.. |+.+..+..+...+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 7888999998532 2 122222222347789999999988887788999999976 9988888887678999999
Q ss_pred e-cCCCeEEEEe
Q 002502 280 M-KSSRRIVIGY 290 (915)
Q Consensus 280 s-~~~~~l~~g~ 290 (915)
. ++.+.|.+.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6666666654
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=5.5e-07 Score=91.88 Aligned_cols=221 Identities=11% Similarity=0.001 Sum_probs=145.7
Q ss_pred CCeEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE
Q 002502 36 SGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (915)
Q Consensus 36 dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 113 (915)
+|.|..||..+|+.+....... ....+. ..+++..+++++.++.|..||..+|+.+..+.. .+.+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6899999999999998886521 222211 344677788888999999999999999888775 22221111 223556
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCC---cceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCe--
Q 002502 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-- 188 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-- 188 (915)
+++++.++.|..+|..++...-....... .......... .++.++++..++.|..+|+.+++.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 77788889999999999855444222221 1112222322 36788888889999999999999888776544221
Q ss_pred --------eEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 189 --------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 189 --------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
..-... .+. .+++++.++.+..+|..+++.+.... ...+.. ...+.+..|++++.++.|..||+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVI-SDG--RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEEC-CTT--EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEE-ECC--EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 111111 222 57777777754444999998765433 222222 2456777888888999999999999
Q ss_pred ceeeee
Q 002502 261 YRLENT 266 (915)
Q Consensus 261 ~~~~~~ 266 (915)
|+....
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 997654
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=8.1e-09 Score=97.02 Aligned_cols=161 Identities=15% Similarity=0.241 Sum_probs=106.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCcee-EEEEecCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVARKQWVVAGAD-----DMFIRVYNYN 87 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~-----dg~i~vwd~~ 87 (915)
|+++-.+-+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++.- -+..+.|+++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence 3333333333445677999999999999997652111 111111111122233344554544321 2345566655
Q ss_pred CCceeEEEecCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 88 TMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 88 ~~~~~~~~~~~~~~i~~l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
..+....-....+.|.+++-+|..+ .+++|+.||.+.+||++....+...+..|+..++.+.|+|+++..|++++.||.
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 4333222222234599999999654 567888899999999998877778889999999999999999999999999999
Q ss_pred EEEEECCC
Q 002502 167 IKIWNLGS 174 (915)
Q Consensus 167 i~i~d~~~ 174 (915)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999754
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=2.8e-07 Score=87.28 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=147.2
Q ss_pred cCCeEEEEECCCCc--eeEEEEecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCceeE-EEecCCCCEEEEE
Q 002502 35 YSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKVK-VFEAHTDYIRCVA 106 (915)
Q Consensus 35 ~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~-----~~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~ 106 (915)
....|.+|++-+.. .+... ..+.|.| .-.+|+.|+..|...+|...+.+... ....|...|+-..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 45567888875543 33323 2344444 44689999999999999998765432 3333443332211
Q ss_pred EcCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC-c-e-EEe
Q 002502 107 VHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-N-F-TLD 182 (915)
Q Consensus 107 ~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~-~-~-~~~ 182 (915)
=.-+ .-.+..++.|.++++.+++.+...... ....-.+.++.++| ++.++++.+....|..|.+..... + . ...
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 1111 224777888999999988765222222 11112378899999 899999999999999998865432 2 1 223
Q ss_pred cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE-----EEecCCccCeEEEEEeCCCC--EEEEEEcCCeEEE
Q 002502 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV-----QTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRI 255 (915)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~~~~~~--~l~~~~~dg~v~i 255 (915)
.....-.+..|+.... .+++++.||++.|||++..... .+-..|.+.+..+.|++.|. +|+..-.-+.+.+
T Consensus 201 ~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred ccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 3344456778876655 7999999999999999874432 22234788999999998765 4444444578999
Q ss_pred EeCCCceeeeeeccC
Q 002502 256 WHATTYRLENTLNYG 270 (915)
Q Consensus 256 wd~~~~~~~~~~~~~ 270 (915)
.|+++++..+.+...
T Consensus 279 ~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 279 VDTRNYVNHQVIVIP 293 (344)
T ss_pred EEcccCceeeEEecC
Confidence 999999866554433
No 305
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=9.9e-09 Score=109.71 Aligned_cols=243 Identities=19% Similarity=0.284 Sum_probs=176.6
Q ss_pred EEEEEEcCC--CCEEEEEEcCCeEEEEECCCC---ceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCce
Q 002502 18 VKSVDLHPS--EPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 18 v~~~~~sp~--~~~la~~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
|-.+.|||. .++-++...+..-.||++... ..--.+.+|...|+.+.|+|.. ..+++++.|..+..||+.+...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 566777774 344555555667779987542 3334567899999999999965 5678999999999999987543
Q ss_pred -eEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 92 -VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 92 -~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
+..+..-......++|+-..+.+++.+....|.+||.+.+..+...+++|...|..+.|+......+.+++.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 3344444455678999987777887888889999999988888999999999999999987667789999999999999
Q ss_pred ECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEE---------EECCC-CcEEEEecCCccCeEEEEEeC
Q 002502 171 NLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV---------WDYQT-KSCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 171 d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~v~~v~~~~ 239 (915)
|........ .......+|..-++.|-|++.++.---.+..+.+ |+..+ .+++..|.+|...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 986543221 2223456777777778777633332222223333 33332 457899999999887776654
Q ss_pred CCC----------EEEEEEcCCeEEEEeCCC
Q 002502 240 ELP----------IIITGSEDGTVRIWHATT 260 (915)
Q Consensus 240 ~~~----------~l~~~~~dg~v~iwd~~~ 260 (915)
.+. .|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 689999999999998753
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=1.6e-06 Score=95.50 Aligned_cols=259 Identities=11% Similarity=-0.033 Sum_probs=158.9
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceeEEEEecCC-CE-E-----EEE--EeCCCCEEEEEeCCCeEEEEECCCCceeEEEe
Q 002502 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL-PV-R-----SAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 96 (915)
.+..+++++.+|.|.-+|..+|+.+........ .. . .+. -.-.+..+++++.+|.+..+|.++|+.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356788888899999999999988876653321 00 0 000 01145678888899999999999999988776
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcc----eEEEEEecCCCCEEEEEECCCcEEEEEC
Q 002502 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY----VMQVTFNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
.......+.... +..+++++.+|.|..+|..++...-..-...... ..+... .+..++.++.+|.+..+|.
T Consensus 148 ~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 148 VAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEc
Confidence 433211111222 4467788889999999999884332221111100 011111 1245777788999999999
Q ss_pred CCCCCceEEecCCC-------CeeEEEEEe--CCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCE
Q 002502 173 GSPDPNFTLDAHQK-------GVNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (915)
Q Consensus 173 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 243 (915)
.+++.......... ....+..+| .++ .+++++.+|.+..+|..+|+.+...... ....+.. .+..
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~ 296 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGR 296 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCE
Confidence 98887665431110 000111111 122 5777888999999999999887765421 1112222 3557
Q ss_pred EEEEEcCCeEEEEeCCCceeeeeeccCCcc-EEEEEEecCCCeEEEEecCCeEEE
Q 002502 244 IITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
|+.++.+|.+..+|..+|+.+......... ..+... .+..|++++.+|.+.+
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 888888999999999999877654322111 112222 2456777888887765
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.87 E-value=1.7e-05 Score=86.27 Aligned_cols=185 Identities=16% Similarity=0.218 Sum_probs=94.0
Q ss_pred CccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe-cCCCccee
Q 002502 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK-IGREEPVA 306 (915)
Q Consensus 228 ~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~-~~~~~~~~ 306 (915)
.......+.++|+|+++++++ +|.-.|+.....+.... +.-...+|.+.+ .+|+-..++.|.+. ........
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccce
Confidence 344577899999999999855 78888888544443322 333467888854 45665556666662 11111000
Q ss_pred EEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc
Q 002502 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN 386 (915)
Q Consensus 307 ~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~ 386 (915)
.+.+ +..+..+.- |.+|.+.+++.+.+|+....+.
T Consensus 104 ----------------------------------~i~~--------~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~ 138 (443)
T PF04053_consen 104 ----------------------------------SIKL--------PFSVEKIFG---GNLLGVKSSDFICFYDWETGKL 138 (443)
T ss_dssp ----------------------------------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--E
T ss_pred ----------------------------------EEcC--------CcccceEEc---CcEEEEECCCCEEEEEhhHcce
Confidence 0000 001122222 8889999888999998876642
Q ss_pred ---cCccceeEEEEecCCcEEEEecCCeEEEeccCcceeeeeecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEEe
Q 002502 387 ---RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID 463 (915)
Q Consensus 387 ---~~~~~~~~~~~s~dg~~l~~~~~~~v~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~ 463 (915)
.....+..+.|+++|.+++..++..+.|++.+...... ...++ -.+ .-..+..+.
T Consensus 139 i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~----~~~~g----------~e~--------~f~~~~E~~ 196 (443)
T PF04053_consen 139 IRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA----IPEEG----------VED--------AFELIHEIS 196 (443)
T ss_dssp EEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH----BTTTB-----------GG--------GEEEEEEE-
T ss_pred eeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc----ccccC----------chh--------ceEEEEEec
Confidence 22334688999999999999888888887654432211 00110 000 112344455
Q ss_pred ccccEEEEcCCCCEEEEEeCCeEEE
Q 002502 464 VTVKNLYWADSGDLVAIASDTSFYI 488 (915)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~ 488 (915)
..|++..|..| .++..+...+..
T Consensus 197 ~~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 197 ERIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp S--SEEEEETT--EEEEE-TTEEEE
T ss_pred ceeEEEEEEcC--EEEEEcCCeEEE
Confidence 68899999887 555555554444
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=6e-06 Score=84.43 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=143.3
Q ss_pred EEEEcC-CCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceeEEEec
Q 002502 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV-ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 20 ~~~~sp-~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 97 (915)
++.|.+ ++.++++-...+.|+.|+..++... .+.... ...+++. ++ ..|+++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 5555555556899999998776543 333232 6777888 56 4556665554 45559998865544432
Q ss_pred -----CCCCEEEEEEcCCCCEEEEEEcC--------CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE-EEEC
Q 002502 98 -----HTDYIRCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASL 163 (915)
Q Consensus 98 -----~~~~i~~l~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~ 163 (915)
.....+.+++.|+|++.++.... |.|..++.. + ....... .-.....++|+| +++.|+ +-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECC-cchheeecccc
Confidence 34567899999999966665543 567778877 4 3333333 235578999999 776655 5667
Q ss_pred CCcEEEEECCCCCC-c---eEE---ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002502 164 DRTIKIWNLGSPDP-N---FTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 164 dg~i~i~d~~~~~~-~---~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 236 (915)
.+.|..+++..... . ..+ ....+....+++..+|+ +.++....+.|.++|.+ |+.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 78899999864332 1 112 22222367788877775 67777788999999987 988888876666899999
Q ss_pred Ee-CCCCEEEEEE
Q 002502 237 FH-PELPIIITGS 248 (915)
Q Consensus 237 ~~-~~~~~l~~~~ 248 (915)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 95 5656555543
No 309
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.7e-06 Score=95.23 Aligned_cols=258 Identities=11% Similarity=0.065 Sum_probs=161.5
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEE-
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC- 104 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~- 104 (915)
+..+++++.+|.+.-+|.++|+.+....... .+.+ ... .+..+++++.+|.|.-+|.++|+.+..+......+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567778889999999999999887766432 2221 111 2456777888999999999999998887642111100
Q ss_pred EEEcC--CCCEEEEEEcCCeEEEEECCCCceEEEEeecCC---c---ceEEEEEec-CCCCEEEEEECCCcEEEEECCCC
Q 002502 105 VAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---YVMQVTFNP-KDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 105 l~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~i~~~~~~p-~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
..-+| .+..++.++.+|.+..+|..++...-..-.... . ....+..+| -.++.+++++.+|.+..+|..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 00111 123577788899999999988733221110000 0 000111111 02456777788999999999999
Q ss_pred CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCEEEEEEcCCeEE
Q 002502 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVR 254 (915)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~l~~~~~dg~v~ 254 (915)
+........ ....+.. .++ .+++++.+|.+..+|..+|+.+........ ...+.... +..|+.++.+|.|+
T Consensus 277 ~~~W~~~~~--~~~~~~~--~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~ 348 (394)
T PRK11138 277 QIVWKREYG--SVNDFAV--DGG--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLH 348 (394)
T ss_pred CEEEeecCC--CccCcEE--ECC--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEE
Confidence 876654321 1112222 233 588888999999999999987765432111 12222222 45788889999999
Q ss_pred EEeCCCceeeeeeccCCccEEE-EEEecCCCeEEEEecCCeEEE
Q 002502 255 IWHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~-i~~s~~~~~l~~g~~dg~v~i 297 (915)
+.|..+|+.+.........+.+ ..+ .+..|++++.+|.++.
T Consensus 349 ~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 349 WINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 9999999988877654333332 222 2457888899988765
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=2.2e-05 Score=74.54 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=117.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeE
Q 002502 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 190 (915)
..+++.|+..+.+.-.|..++...-...-+ .+|.+-+.- -++.++.|+..|.+++.+.+++.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 456778888888888888887443333222 233333333 2678999999999999999999887776543322122
Q ss_pred EEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCce--eeeeec
Q 002502 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENTLN 268 (915)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~ 268 (915)
....+++. ++..|+.|+..+..|.++..++...+-..+...+-++.|....|..+...|.|.--..+++. .+....
T Consensus 99 a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 99 AQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred eEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 33344554 89999999999999999999998877555555566677733345555556666555545442 222111
Q ss_pred cCCccEEE--EEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEE
Q 002502 269 YGLERVWA--IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (915)
Q Consensus 269 ~~~~~v~~--i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~ 317 (915)
. .+++.+ ++. ++.+..++-||.+.- +++.|+.+|.
T Consensus 177 ~-~~PiF~splcv---~~sv~i~~VdG~l~~----------f~~sG~qvwr 213 (354)
T KOG4649|consen 177 R-FGPIFASPLCV---GSSVIITTVDGVLTS----------FDESGRQVWR 213 (354)
T ss_pred c-CCccccCceec---cceEEEEEeccEEEE----------EcCCCcEEEe
Confidence 1 122222 121 455777777887765 5666666664
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=8.8e-06 Score=81.68 Aligned_cols=232 Identities=12% Similarity=0.124 Sum_probs=157.4
Q ss_pred CCEEEEEEcCC-CCEEEEEEcCCe-EEEEECCCCceeEEEEecCCCEE--EEEEeCCCCEEEEEe-----CCCeEEEEEC
Q 002502 16 ERVKSVDLHPS-EPWILASLYSGT-VCIWNYQSQTMAKSFEVTELPVR--SAKFVARKQWVVAGA-----DDMFIRVYNY 86 (915)
Q Consensus 16 ~~v~~~~~sp~-~~~la~~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~--~~~~s~~~~~l~~g~-----~dg~i~vwd~ 86 (915)
.+...++.+|+ ...++.+-.-|. ..+||..+++....+....+.-. .-.||+||++|++.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 45667899994 455666766554 78899999998887765444322 468999999999873 3589999999
Q ss_pred C-CCceeEEEecCCCCEEEEEEcCCCCEEEEEEc------------------CCeEEEEECCCCceEEE-Ee--ecCCcc
Q 002502 87 N-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD------------------DMLIKLWDWEKGWMCTQ-IF--EGHSHY 144 (915)
Q Consensus 87 ~-~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~~--~~~~~~ 144 (915)
. +.+.+..+..|.-....+.+.|||+.|+++.. +.++...|..++..+.+ .+ ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 77888888887777788999999988887632 23456666677743333 23 336677
Q ss_pred eEEEEEecCCCCEEEEEECCCc-------EEEEECCCCCCceEE-------ecCCCCeeEEEEEeCCCcCEEEEEECCCe
Q 002502 145 VMQVTFNPKDTNTFASASLDRT-------IKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (915)
|..+++.+ ++..++..-..|. |-+++. +.....+ ......+-+|+++.++.. +.+++=..+.
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~-ia~tsPrGg~ 240 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL-IAVTSPRGGR 240 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE-EEEECCCCCE
Confidence 89999987 6655554443332 333332 2222222 223467889999988772 3344446789
Q ss_pred EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEE
Q 002502 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~i 255 (915)
+.+||..+++.+.... -..+..++..+++ ++++.+ .|.+..
T Consensus 241 ~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred EEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC-CccEEE
Confidence 9999999999887665 3346777777776 555554 454433
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.78 E-value=1.1e-07 Score=89.47 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCCc------------eeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQT------------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
|+.+.++.+- .|+++..++.+..+...++. ..+.+..|..+-.+-..+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666554 36666666655555433322 2233333443333333444567899999999999998
Q ss_pred CCCCcee-EEEe-cCCCCEEEEEEcCCCCEEEEEE-----cCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 86 YNTMDKV-KVFE-AHTDYIRCVAVHPTLPYVLSSS-----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 86 ~~~~~~~-~~~~-~~~~~i~~l~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.+....+ ..+. .|.+ -.+.+....++.+.++. .-+..+.|+++........... ...|.+++-+|...+.+
T Consensus 118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEE
Confidence 7642111 1111 1111 11222223344443322 1245677776654222222222 23388999999777888
Q ss_pred EEEECCCcEEEEECCCCC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC
Q 002502 159 ASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
++|+.||.+.+||.++.. +...+..|+.+++-+-|+|.... .|++++.||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 999999999999998764 34456789999999999997655 699999999999999764
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.77 E-value=1.1e-07 Score=95.48 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=114.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCce----eEEEecCCCCEEEEEEcCCCCEEEEE---EcCCeEEEEECCCCc
Q 002502 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSS---SDDMLIKLWDWEKGW 132 (915)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~l~~~---~~dg~i~iwd~~~~~ 132 (915)
...+..++.+++||++..+....++++..... ..... -...-+.+.|-.+.....++ ++...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 44556778899999998888877777654332 22221 12233444444444444444 44455666665543
Q ss_pred eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECCCeE
Q 002502 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
......+|-+.+..++|+| |++.++++..|..|++-.......+..+ .+|..-|..++..++. .|++++.|++|
T Consensus 143 -~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~tl 217 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKTL 217 (390)
T ss_pred -CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCcE
Confidence 3445568999999999999 8899999999999999887665555444 4699999999987654 58999999999
Q ss_pred EEEECCCCcEEEEec
Q 002502 212 KVWDYQTKSCVQTLE 226 (915)
Q Consensus 212 ~iwd~~~~~~~~~~~ 226 (915)
++||+.+|+.+.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999886654
No 314
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=4.4e-09 Score=114.38 Aligned_cols=220 Identities=17% Similarity=0.212 Sum_probs=162.6
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCC--eEEE
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKL 125 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg--~i~i 125 (915)
+..++|..|+...+|++|+.+.+.|++|+..|.|++|++.+|.......+|.+.|+-+.=+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999877665433 4678
Q ss_pred EECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe----cCCCCeeEEEEEeCCCcCE
Q 002502 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD----AHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~ 201 (915)
|+..+-....+.+.. -.++.|+. ....-+.|+......+||+.++.+..++- +....-++..|+|..+ +
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~--L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT--L 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc--e
Confidence 998754344444432 35678876 34444556666778999999988776632 1223347888998876 3
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEec
Q 002502 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (915)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~ 281 (915)
++ +|| .+||.+..+.++.|......+ .-.|+|.|.-++..++ |||++|.++++....-. -..+.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence 43 344 579999888887776554333 3469999998888664 79999999887765432 24577777
Q ss_pred CCCeEE
Q 002502 282 SSRRIV 287 (915)
Q Consensus 282 ~~~~l~ 287 (915)
.|..+.
T Consensus 1312 tG~VmY 1317 (1516)
T KOG1832|consen 1312 TGDVMY 1317 (1516)
T ss_pred Cccchh
Confidence 766544
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=2.1e-05 Score=79.00 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=152.4
Q ss_pred CEEEEEEeC-CCCEEEEEeCCC-eEEEEECCCCceeEEEecCCCCEE--EEEEcCCCCEEEEEEc-----CCeEEEEECC
Q 002502 59 PVRSAKFVA-RKQWVVAGADDM-FIRVYNYNTMDKVKVFEAHTDYIR--CVAVHPTLPYVLSSSD-----DMLIKLWDWE 129 (915)
Q Consensus 59 ~v~~~~~s~-~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~l~~~~~-----dg~i~iwd~~ 129 (915)
....++.+| ++..++.+-.-| ...+||..+++....+....+.-. .-.||+||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 445555665544 678999999998887765444332 3689999999998643 4899999999
Q ss_pred CCceEEEEeecCCcceEEEEEecCCCCEEEEEEC------------------CCcEEEEECCCCCCceE--E--ecCCCC
Q 002502 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL------------------DRTIKIWNLGSPDPNFT--L--DAHQKG 187 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~--~--~~~~~~ 187 (915)
.+......+..|.-....+.+.| ++..|+++.. +.++...|..+++.+.+ + ..|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66567777777766667788999 7777776532 34466666677776655 3 336678
Q ss_pred eeEEEEEeCCCcCEEEEEEC-CC-------eEEEEECCCCcEEEEec-------CCccCeEEEEEeCCCCEEEEEE-cCC
Q 002502 188 VNCVDYFTGGDKPYLITGSD-DH-------TAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHPELPIIITGS-EDG 251 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~-~dg 251 (915)
+..+++.++|. ++.+.. .| .|.+++. ++.+..+. ...+.+-+|++++++..+++.+ ..|
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 88999988875 444432 22 2444442 33233222 2346689999999998776555 667
Q ss_pred eEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeE
Q 002502 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (915)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v 295 (915)
.+.+||..+++.+...... .+..++..+++ ++++ +..|.+
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~s-sG~G~~ 279 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVS-SGQGQL 279 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEe-CCCccE
Confidence 8999999999988776544 45566666666 4444 334443
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-07 Score=95.12 Aligned_cols=250 Identities=13% Similarity=0.176 Sum_probs=176.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCC
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTM 89 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~~~ 89 (915)
|.+.|+.+.-+. .+++.+++.||.++.|--.. -+.++.+..|-+.|.+++.+-++..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 667777765554 46899999999999998432 1345556678889999999999999999877 999999998876
Q ss_pred ceeEEEe--cCCCCEEEEEEcCCCC--EEEEE-EcCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 90 DKVKVFE--AHTDYIRCVAVHPTLP--YVLSS-SDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 90 ~~~~~~~--~~~~~i~~l~~s~~~~--~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
..+..++ --++.+.+ ..++... .|+++ -.+|.+.++|-.... .....-.-|..+|.++.++| .+..+++...
T Consensus 87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence 5543333 12222221 1222211 34433 356899999987653 33444556899999999999 8889999999
Q ss_pred CCcEEEEECCC------CCCceE---------EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec--
Q 002502 164 DRTIKIWNLGS------PDPNFT---------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-- 226 (915)
Q Consensus 164 dg~i~i~d~~~------~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 226 (915)
.|.|.-|.... .+.... +...+....++.++|++. .+.+-+.|..|+++++.+|+.++.+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--cccccCcccEEEEEEeccchhhhhhhcc
Confidence 99999998763 111111 122345668999999998 58888899999999999887655332
Q ss_pred ------------------------------CCc-cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc
Q 002502 227 ------------------------------GHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 227 ------------------------------~~~-~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
.|. ..-+.++|...|++|+-|+.=| |++.++.++...+.+..
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 111 1235677888888888887664 88888888887776643
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.66 E-value=1.3e-06 Score=96.48 Aligned_cols=182 Identities=12% Similarity=0.132 Sum_probs=140.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEE
Q 002502 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 68 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (915)
++..++.|+-...+..+|+++.+..+...-..+.|.-|+. +++++.+|...|+|.+-|.++. ...+.+..|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceee
Confidence 3456777777778889999988877776654545665554 5788999999999999999988 788899999999988
Q ss_pred EEEecCCCCEEEEEEC---------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC-
Q 002502 148 VTFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ- 217 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 217 (915)
+.. .++.|++++. |.-|+|||++..+.+..+.-+.++ .-+.|.|.-.. .+++++..|...+.|..
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEecccceeeccccc
Confidence 776 4788888875 556899999987766555544443 56778887554 68888999999999943
Q ss_pred --CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEe
Q 002502 218 --TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 218 --~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd 257 (915)
+. .-+..+......+..++++++|..++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 12333443445599999999999999999999999997
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.66 E-value=5.7e-06 Score=89.49 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=131.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEE-EEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
|...|.--+++..+++++.|+..|.+++|+-..+...+. ..+..+.+..+..+++..++|+|+..|.|.++-++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 566777778888999999999999999999666654332 2235556777788899999999999999999988764332
Q ss_pred EE-----E-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC---ceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 93 KV-----F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 93 ~~-----~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
.. . +.|...|++++|++++..+++|...|.|..-.+++. ....+.+....+.|..+.+.. . +|++++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~-~LLVStl 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--S-YLLVSTL 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--c-eehHhhh
Confidence 11 1 247889999999999999999999999999888761 112233334556787887762 3 4444443
Q ss_pred CCcEEEEECCCCCCceEE--ecCCC-CeeEEEEEeC---CCcCEEEEEECCCeEEEEECCC-CcEEEE
Q 002502 164 DRTIKIWNLGSPDPNFTL--DAHQK-GVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQT-KSCVQT 224 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~--~~~~~-~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-~~~~~~ 224 (915)
-+. .+++....+ +..+ +..++ .-...+|.|. +..+.|+++--. .++|..+- |..+++
T Consensus 189 ~r~-~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 189 TRC-ILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKT 252 (726)
T ss_pred hhh-heeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEe
Confidence 333 344444332 1111 11111 1245666665 344456555444 45564331 554443
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=2.3e-05 Score=79.86 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=134.1
Q ss_pred CCCeEEEEECCCCceeEEEecC--CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002502 77 DDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 77 ~dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
++|+|..||..+|+.+...... .....+. ..+++.++++++.++.|..||..++.. .-.+... ..+...... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~~-~~~~~~~~~--~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDLP-GPISGAPVV--D 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEECS-SCGGSGEEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeecc-ccccceeee--c
Confidence 3689999999999999888641 1222222 223566788889999999999998843 3333321 111111122 4
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceEE-ecCC---CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCcc
Q 002502 155 TNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ---KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 230 (915)
++.+++++.++.|..+|..+++..... .... ...........++ .++++..++.|..+|.++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 567777778899999999999998874 3221 1112222333344 688888899999999999999888765432
Q ss_pred C----------eEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 231 N----------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 231 ~----------v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
. +..-....++ .++.++.+|.+..+|+.+++.+.... ...+.. .....+..|++++.++.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 2 1222223344 77777777754444999999765433 222222 145677888888888888774
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.62 E-value=8e-07 Score=98.09 Aligned_cols=182 Identities=14% Similarity=0.212 Sum_probs=140.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEE
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 106 (915)
+..++.|+-...+..+|+.+.+..+......+.|.-++ .+++.+.+|...|+|.+-|.++.+.++++.+|++.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 44566777677788899999888887776665665554 4778999999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEEc---------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE---CCC
Q 002502 107 VHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN---LGS 174 (915)
Q Consensus 107 ~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d---~~~ 174 (915)
. .|+.|++|+. |..|+|||++.-+.+. .+.-+.++ .-+.|.|.-...+++++..|...+-| +.+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 6 4788998875 4568999998763322 22223222 45778887788999999999999999 444
Q ss_pred CC-CceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEEC
Q 002502 175 PD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 175 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
.. ....+......+..++++++++ .++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeecC
Confidence 32 2333444556688999999888 7999999999999973
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.2e-06 Score=95.87 Aligned_cols=182 Identities=13% Similarity=0.180 Sum_probs=131.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.+.+.|++++ ++.|+.|..+|.|++++.. +.. .+...|... ..+|.++++|+.||.|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3557778887 6789999999999999964 433 333334433 66899999999999999999988887777
Q ss_pred EecCCCCEEEEEEcCC-----CCEEEEEEcCCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 95 FEAHTDYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
+.- ..++.+++++|+ .+.+++|+..| +.++.-+ +. .....+....++|.++.|. +++++-++.+| |
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v 181 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-V 181 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEec---CcEEEEecCCC-c
Confidence 664 457999999997 45789999888 7776432 22 2222455667899999995 67888777655 8
Q ss_pred EEEECCCCCCceEEecCCCC------eeEEEEEeCCCcCEEEEEECCCeEEEEECC
Q 002502 168 KIWNLGSPDPNFTLDAHQKG------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
++||+.+.+.+..+...... ...+.|.+... |+.| +..+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~---LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR---LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe---EEEe-cCCeEEEEEEe
Confidence 99999887766555433322 24577776543 5555 45578888876
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=1.5e-05 Score=77.48 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEe-------cCCCEEEEEEeCCC------CEEEEEeCCCeEEEE
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-------TELPVRSAKFVARK------QWVVAGADDMFIRVY 84 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~------~~l~~g~~dg~i~vw 84 (915)
=+.++||||+..||.+...|+|++||+... .+..+.. -...|..+.|.+.. ..|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 367999999999999999999999997653 3333332 12457777776532 246666778888877
Q ss_pred ECCC-----CceeEEEe---cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002502 85 NYNT-----MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 85 d~~~-----~~~~~~~~---~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (915)
-+.. .+....+. .+...|.++.++|..+.|++|+.... +.+ . -......+++-..-...+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-M----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-c----ccccccCceEEEEcCCCCc
Confidence 6532 23334443 34678999999999998888765322 000 0 0001111222111110111
Q ss_pred EEE-EEECCC------cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC
Q 002502 157 TFA-SASLDR------TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (915)
Q Consensus 157 ~l~-~~~~dg------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (915)
+.. +...|+ +..+|.+-+.+...........|..|..+|+|. .|++...+|.|.+|++.+-+....+..
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC--EEEEEEcCCeEEEEecCcchhhcccch
Confidence 111 111111 112333322221112233567899999999998 799999999999999988766665543
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.61 E-value=3.6e-05 Score=83.08 Aligned_cols=263 Identities=13% Similarity=0.170 Sum_probs=152.3
Q ss_pred cCCCCEEEEEE---------cCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002502 24 HPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 24 sp~~~~la~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
|||+++++... ..+.+.|||+.+++....... ...+....|||+|++++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 78999888743 246799999999765543333 56788999999999999885 57899999877744322
Q ss_pred Ee-c-------C---------CCCEEEEEEcCCCCEEEEEEcC-C-----------------------------------
Q 002502 95 FE-A-------H---------TDYIRCVAVHPTLPYVLSSSDD-M----------------------------------- 121 (915)
Q Consensus 95 ~~-~-------~---------~~~i~~l~~s~~~~~l~~~~~d-g----------------------------------- 121 (915)
-. + - -+.-..+-||||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 11 1 0 1123568899999998865322 1
Q ss_pred eEEEEECCCCceE-EEEe---ecCCcceEEEEEecCCCCEEEEEECCC-----cEEEEECCCCCCceEEec-CCC---Ce
Q 002502 122 LIKLWDWEKGWMC-TQIF---EGHSHYVMQVTFNPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDA-HQK---GV 188 (915)
Q Consensus 122 ~i~iwd~~~~~~~-~~~~---~~~~~~i~~~~~~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~~~---~v 188 (915)
.+.++|+.++... .... ......+..+.|.+ ++..|+..-.++ .+.++|..++........ ... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 2334455544221 1111 13355688999998 666444433322 366778877655433322 112 12
Q ss_pred eEEEEE-eCCCcCEEEEEECCCe--EEEEECCCCcEEEEecCCccCeEE-EEEeCCCCEEE-EEEcC----CeEEEEeCC
Q 002502 189 NCVDYF-TGGDKPYLITGSDDHT--AKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIII-TGSED----GTVRIWHAT 259 (915)
Q Consensus 189 ~~~~~~-~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~-~~~~d----g~v~iwd~~ 259 (915)
....+. +++.. ++.....+|. |.+++...+. ...+....-.|.. +.++++++.|. ++..+ ..|...++.
T Consensus 238 ~~~~~~~~~~~~-~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNE-FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSE-EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCE-EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 345554 55554 5666667765 5555655444 4455545556744 67888877655 44432 246666666
Q ss_pred CceeeeeeccCCccEEEEEEecCCCeEEEEec
Q 002502 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 260 ~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
.+.....+.........+.|||++++++..+.
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 23334444444333379999999999887654
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.6e-06 Score=90.34 Aligned_cols=204 Identities=13% Similarity=0.249 Sum_probs=139.4
Q ss_pred EEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCC-----
Q 002502 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDM-----FIRVYNYNTM----- 89 (915)
Q Consensus 21 ~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~g~~dg-----~i~vwd~~~~----- 89 (915)
-+|++.+..++.|+.+|.|.+++ ++.+.++.+..+... |..+-...+..+|++.+.|+ .|+||+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34688889999999999999998 666677888888777 44444333446777766553 5999998632
Q ss_pred -cee---EEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--CC-ceEEEEeecCCcceEEEEEecCCCCEE
Q 002502 90 -DKV---KVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KG-WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 90 -~~~---~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.++ ..+. ..+.++.+++.|.+-+.+++|-.+|.|..+.-+ .. ............+|+.+.+.. ++..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence 222 1111 235678999999999999999999999998532 11 122233334567899999987 55553
Q ss_pred EEEECCCcEEEEECCCCCCc-eEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEec-CCc
Q 002502 159 ASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHT 229 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 229 (915)
+.......|.+|.+.+..+. ..+..+..+++|..+++.... +++++ +..+.+|+.....+...+. ++.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q--fIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ--FICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc--EEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 33334567999999755533 447778888999998876542 44444 3469999987655555555 443
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.4e-07 Score=90.85 Aligned_cols=161 Identities=11% Similarity=0.129 Sum_probs=118.5
Q ss_pred EEeCC--CCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC----ceEEEE
Q 002502 64 KFVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----WMCTQI 137 (915)
Q Consensus 64 ~~s~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~ 137 (915)
+|+-+ |-. ++.+.+-.|-+-|+.||-. ..|. ..+.|.++.|...++.+..|..+|.|..+|++.+ ..+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56532 333 3344556788888887643 3333 4667899999999999999999999999999854 122233
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEE
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
+ -|.+.|+++..-..+++.|.+.+.+|+|++||++.-+. +.++.+|-..-.-+-+.-+.....++++++|...+||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 2 37888999887655678999999999999999987666 6777777554444444444445589999999999999
Q ss_pred ECCCCcEEEEecCC
Q 002502 215 DYQTKSCVQTLEGH 228 (915)
Q Consensus 215 d~~~~~~~~~~~~~ 228 (915)
.++.|+.+.++...
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999998887643
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=2.5e-07 Score=90.73 Aligned_cols=151 Identities=20% Similarity=0.249 Sum_probs=116.7
Q ss_pred EEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-----CCceEEecCCCCee
Q 002502 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-----DPNFTLDAHQKGVN 189 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~ 189 (915)
++.+.+..|-+-|+.++ ..+.+. .++.|.++.|.. .++++..|+.+|.|..+|++.. .+...+ -|...|+
T Consensus 228 fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecc--cccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence 44555667888999987 334444 567788999987 7899999999999999999865 223333 4888899
Q ss_pred EEEEEeCCCcCEEEEEECCCeEEEEECCCCcE---EEEecCCccCeEEE--EEeCCCCEEEEEEcCCeEEEEeCCCceee
Q 002502 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSAV--CFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~v--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
++......+. +|++.+.+|+|++||.+.-++ +.+..+|...-.-+ -..+....|++++.|...|||.+..|.++
T Consensus 303 slq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 303 SLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9887763332 899999999999999997666 88888886543333 34566678899999999999999999999
Q ss_pred eeeccCC
Q 002502 265 NTLNYGL 271 (915)
Q Consensus 265 ~~~~~~~ 271 (915)
.++..+.
T Consensus 382 ~tipf~~ 388 (425)
T KOG2695|consen 382 CTIPFPY 388 (425)
T ss_pred eccCCCC
Confidence 9887664
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.49 E-value=0.0001 Score=83.12 Aligned_cols=262 Identities=12% Similarity=0.135 Sum_probs=155.4
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCC------CEE--EEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL------PVR--SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+..+.+++.+|.|.-.|..+|+.+..+..... .+. .+.. .++..++.++.+|.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44567777789999999999988877654322 110 0111 12267888889999999999999999887643
Q ss_pred CCC-----E-EEEEEcCCCCEEEEEE---------cCCeEEEEECCCCceEEEEeecCCc-------------------c
Q 002502 99 TDY-----I-RCVAVHPTLPYVLSSS---------DDMLIKLWDWEKGWMCTQIFEGHSH-------------------Y 144 (915)
Q Consensus 99 ~~~-----i-~~l~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~ 144 (915)
... + .+..+. +..+++++ .+|.|..+|..+++..-+.-..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 1 111222 24455554 3678999999988433322111110 0
Q ss_pred e-EEEEEecCCCCEEEEEECCC------------------cEEEEECCCCCCceEEecCCCCe------eEEEEEe----
Q 002502 145 V-MQVTFNPKDTNTFASASLDR------------------TIKIWNLGSPDPNFTLDAHQKGV------NCVDYFT---- 195 (915)
Q Consensus 145 i-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~v------~~~~~~~---- 195 (915)
+ .+..+.+ .+..+++++.++ .|.-+|..+++....+....... ....+..
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1233343 456777777665 69999999999887764321111 1111111
Q ss_pred CCC-cCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEE------------------EcCCeEEEE
Q 002502 196 GGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG------------------SEDGTVRIW 256 (915)
Q Consensus 196 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~------------------~~dg~v~iw 256 (915)
++. ..++++++.+|.+..+|.++|+.+....... ..++.+| ..++.+ ..+|.|.-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 121 1257888889999999999999987765221 1233444 223332 236788899
Q ss_pred eCCCceeeeeeccCCc--------cEEEEEEecCCCeEEEEecCCeEEE
Q 002502 257 HATTYRLENTLNYGLE--------RVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 257 d~~~~~~~~~~~~~~~--------~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
|+.+|+.+.+...... +...-.....+..|++++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 9999998877664411 1111111124566777777777665
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.2e-06 Score=82.55 Aligned_cols=250 Identities=10% Similarity=0.106 Sum_probs=145.1
Q ss_pred chhhhhhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 002502 4 RLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFI 81 (915)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i 81 (915)
.|+....+.+|..-|+.++|||... ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-|. ++|..|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3444556778889999999999877 7778888999999999999999988877 789999998865 567778889999
Q ss_pred EEEECCCCcee-EEEec--CCCCEEEEE------EcCCCCEEEEEEcCCeEEEEECCCCce-EEEEe-ecCCcceEEEEE
Q 002502 82 RVYNYNTMDKV-KVFEA--HTDYIRCVA------VHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIF-EGHSHYVMQVTF 150 (915)
Q Consensus 82 ~vwd~~~~~~~-~~~~~--~~~~i~~l~------~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~i~~~~~ 150 (915)
.|||+...+-. ..+.+ ...+|..++ ..+.+.+|+..+.+ +..|.+..... ...++ ....+...++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 99999754321 11111 122333333 23344444444443 55666543211 11111 122445566666
Q ss_pred ecCCCCEEEEEECCC------cEEE-EECCCCCCceEEe-cCCC----Ce---eEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 151 NPKDTNTFASASLDR------TIKI-WNLGSPDPNFTLD-AHQK----GV---NCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg------~i~i-~d~~~~~~~~~~~-~~~~----~v---~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
.+..+..+++.-.+. .|-. -|-..+.++.... .+.+ ++ ..+.-.++. ..++.++...+.+.+||
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n-n~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN-NYIVVVGDSTNELILQD 417 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc-cEEEEecCCcceeEEec
Confidence 663333333332211 1111 1112222222111 1100 00 111111222 22344455668899999
Q ss_pred CCCCcEEEEecCCccCeEEEEEeC-CC-CEEEEEEcCCeEEEEeCC
Q 002502 216 YQTKSCVQTLEGHTHNVSAVCFHP-EL-PIIITGSEDGTVRIWHAT 259 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~v~~~~-~~-~~l~~~~~dg~v~iwd~~ 259 (915)
..+.+.++++.. ..+|..++... ++ .+|++-. |..++||...
T Consensus 418 ~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred cchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 999999998874 47788777554 33 3565555 5588888643
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.43 E-value=0.0011 Score=68.97 Aligned_cols=245 Identities=10% Similarity=0.078 Sum_probs=118.9
Q ss_pred ECCCCceeEEEEecCCCEEE-----EEEeCCCCEEEEEeC---CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEE
Q 002502 43 NYQSQTMAKSFEVTELPVRS-----AKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (915)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 114 (915)
|..+|..+..+......... =+|.++|+.|+.++. ...+.+.|+.+++..+.-.+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 66777777777654433332 367889988877665 4478888999877655444322223356778888887
Q ss_pred EEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEec-CCCCEEEEEEC----------------------CCcEEEEE
Q 002502 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASL----------------------DRTIKIWN 171 (915)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~~~~~----------------------dg~i~i~d 171 (915)
+-......|.-.|+++. +...++......+-...|.. .++..++-.-. ...|.-.|
T Consensus 96 ~Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTL-EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTTEEEEEETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCCeEEEEECCcC-cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76656678999999997 55566666666666667753 24444432211 13455567
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEEC---CC-eEEEEECCC-CcEEEEecCCcc--CeEEEEEeCCCCEE
Q 002502 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DH-TAKVWDYQT-KSCVQTLEGHTH--NVSAVCFHPELPII 244 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~--~v~~v~~~~~~~~l 244 (915)
+.+++....+. ...-+..+.|+|.... +|+-|-. +. .-+||-+++ +...+.+..+.. .+..=-|.|||..|
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 77766544443 4556678888887553 3433332 22 124554432 444444443322 23444589999866
Q ss_pred EEEE-----cCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecC
Q 002502 245 ITGS-----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (915)
Q Consensus 245 ~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~d 292 (915)
.--+ .+..|.-+|+.+++....... .....+-.++||++++.-+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 5422 234577788888765433222 234566677888877764443
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.39 E-value=0.0002 Score=80.77 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=145.4
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEEecCCC-----EE-EEEEeCCCCEEEEEe---------CCCeEEEEECCCCcee
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VR-SAKFVARKQWVVAGA---------DDMFIRVYNYNTMDKV 92 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~s~~~~~l~~g~---------~dg~i~vwd~~~~~~~ 92 (915)
..+++++.+|.|.-+|.++|+.+..+...... +. +..+. +..+++++ .+|.+..+|..+|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57788888999999999999988777643321 11 11121 24555554 3678999999999998
Q ss_pred EEEecCCCC--------------------E-EEEEEcCCCCEEEEEEcCC------------------eEEEEECCCCce
Q 002502 93 KVFEAHTDY--------------------I-RCVAVHPTLPYVLSSSDDM------------------LIKLWDWEKGWM 133 (915)
Q Consensus 93 ~~~~~~~~~--------------------i-~~l~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 133 (915)
..+...... + ...++.+.+..+++++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 877542110 1 1234445566788887665 789999998844
Q ss_pred EEEEeec-CCc----ceEEEEEe---cCCC---CEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEE
Q 002502 134 CTQIFEG-HSH----YVMQVTFN---PKDT---NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 134 ~~~~~~~-~~~----~i~~~~~~---p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (915)
.-+.-.. |.. ......+. +.++ ..+++++.+|.+...|..+++.+....... ..+...| + .+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~--~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G--LV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c--eE
Confidence 3332111 210 00001111 1122 257788889999999999999887654221 1122222 1 23
Q ss_pred EEE------------------ECCCeEEEEECCCCcEEEEecCCc--------cCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 002502 203 ITG------------------SDDHTAKVWDYQTKSCVQTLEGHT--------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 203 ~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~v~~~~~~~~l~~~~~dg~v~iw 256 (915)
..+ ..+|.+.-.|..+|+.+.+..... .+...-.....+..|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 322 246789999999999887765431 111111111245678888999999999
Q ss_pred eCCCceeeeeeccC
Q 002502 257 HATTYRLENTLNYG 270 (915)
Q Consensus 257 d~~~~~~~~~~~~~ 270 (915)
|..+|+.+.+.+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 99999999887764
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.9e-06 Score=84.21 Aligned_cols=209 Identities=17% Similarity=0.118 Sum_probs=144.3
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CCeEEEEECCCC
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT---MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKG 131 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~iwd~~~~ 131 (915)
|...|+.+.- .-.+++.+++-||.++.|--.. -+.+..+..|...|.+++.+.++-.+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5555555443 3567899999999999997543 1334556688999999999999988888777 999999998865
Q ss_pred ceEEEE-eecCCcceEEEEEecCCC-CEEEE-EECCCcEEEEECCCCC--CceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 132 WMCTQI-FEGHSHYVMQVTFNPKDT-NTFAS-ASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 132 ~~~~~~-~~~~~~~i~~~~~~p~~~-~~l~~-~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
....-. +..-.+ ..++..+|.+. ..+++ .-.+|.+.++|-.... ....-.-|..+|.++.+.+.++ .+++..
T Consensus 87 DminmiKL~~lPg-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPG-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSID 163 (558)
T ss_pred chhhhcccccCCC-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeecc
Confidence 222111 111112 12222333111 13333 3347889999976543 2233356889999999999998 588888
Q ss_pred CCCeEEEEECCC------CcEE---------EEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeec
Q 002502 207 DDHTAKVWDYQT------KSCV---------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 207 ~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
..|.|.-|.... ++.. ..+.......+++.|+|+|..+.+-+.|..|+++...+|++++.+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 899999998762 1111 1122234567899999999999999999999999999998766543
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.1e-05 Score=76.07 Aligned_cols=253 Identities=11% Similarity=0.047 Sum_probs=149.0
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCC-CEEEE
Q 002502 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~ 116 (915)
|++.+..+.+....+..+...|+.++|+|..+ ++..++.+..|.|.|+.+...+..+..+ ..+++++|.-+. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555555666778899999999877 6788899999999999999888888887 789999998765 46778
Q ss_pred EEcCCeEEEEECCCCceEEEEeec--CCcceEEEEEecC-----CCCEEEEEECCCcEEEEECCCC--CCceEEe-cCCC
Q 002502 117 SSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPK-----DTNTFASASLDRTIKIWNLGSP--DPNFTLD-AHQK 186 (915)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~-----~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~ 186 (915)
|...|.|.+||++........+.+ ...+|..++.-+. .+.+++..+. .+..|.+... .....+. ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 888999999999876444333322 2344544443321 2333333332 2445655322 1222221 2344
Q ss_pred CeeEEEEEeCCCcCEEEEEECCCe------EE-EEECCCCcEEEEec-CCcc----Ce---EEEEEeCCCCEEE-EEEcC
Q 002502 187 GVNCVDYFTGGDKPYLITGSDDHT------AK-VWDYQTKSCVQTLE-GHTH----NV---SAVCFHPELPIII-TGSED 250 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~------i~-iwd~~~~~~~~~~~-~~~~----~v---~~v~~~~~~~~l~-~~~~d 250 (915)
...++.+.+..+. .+++.-.+.. +- -.|..+|.++...+ ++.+ ++ ..+.-.++.++|+ +|...
T Consensus 332 ~cismqy~~~snh-~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNH-LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccce-EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4555555554442 3444333210 11 11233444433222 1101 10 1122234445444 45566
Q ss_pred CeEEEEeCCCceeeeeeccCCccEEEEEEecC--CCeEEEEecCCeEEE
Q 002502 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKS--SRRIVIGYDEGTIMV 297 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~--~~~l~~g~~dg~v~i 297 (915)
+.+.+||..++..++++... .+|..++.... +.+|++-++ ..++|
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd-~~v~I 457 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTD-DRVHI 457 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheec-ceEEE
Confidence 78999999999999998877 77887776542 345555444 34444
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.38 E-value=0.00052 Score=70.00 Aligned_cols=247 Identities=14% Similarity=0.167 Sum_probs=152.0
Q ss_pred EEEEEcCCCCEEEEEEc----------CCeEEEEECCCCceeEEEEecCC-C------EEEEEEeCCCCEEEEEeC--CC
Q 002502 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-P------VRSAKFVARKQWVVAGAD--DM 79 (915)
Q Consensus 19 ~~~~~sp~~~~la~~~~----------dg~v~iwd~~~~~~~~~~~~~~~-~------v~~~~~s~~~~~l~~g~~--dg 79 (915)
-.+..||+++.++++.. .-.|.+||..+-.....+....+ . ...++++.|++++++..- -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999998887642 33599999999888777665443 2 234678889998887643 56
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEE----EeecCCcceE-EEEEecCC
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ----IFEGHSHYVM-QVTFNPKD 154 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~i~-~~~~~p~~ 154 (915)
.|.|.|+..++.+..+... +...-.-+. ...+.+-+.||.+.-..+....+..+ .|.....++. .-.+.. .
T Consensus 119 SVtVVDl~~~kvv~ei~~P-GC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP-GCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT-SEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred eEEEEECCCCceeeeecCC-CEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence 8999999998888877643 222111222 24577888899999988883322222 2222222222 333444 5
Q ss_pred CCEEEEEECCCcEEEEECCCCCCceE--Eec----------CCCCeeEEEEEeCCCcCEEEEE-ECC-------CeEEEE
Q 002502 155 TNTFASASLDRTIKIWNLGSPDPNFT--LDA----------HQKGVNCVDYFTGGDKPYLITG-SDD-------HTAKVW 214 (915)
Q Consensus 155 ~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~----------~~~~v~~~~~~~~~~~~~l~~~-~~d-------g~i~iw 214 (915)
+..++.-+.+|.|+-.|+........ +.. ..++-.-+++++..+..|++.- +.+ ..|.++
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 56677778899999999876653221 110 1233445666665553222211 111 148888
Q ss_pred ECCCCcEEEEecCCccCeEEEEEeCCCC-EEEEEE-cCCeEEEEeCCCceeeeeeccC
Q 002502 215 DYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
|+.+++.+..+.. ..++.+|..+.+.+ +|++.+ .++.|.+||..+|+.+.++..-
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 9999999988873 34677999998765 665544 5789999999999998887643
No 334
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.34 E-value=1.9e-06 Score=58.78 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=36.6
Q ss_pred CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
++++.++.+|..+|.+++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788999999999999999999999999999999997
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.33 E-value=1.9e-06 Score=58.81 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.7
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 336
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.0018 Score=71.24 Aligned_cols=137 Identities=16% Similarity=0.037 Sum_probs=87.7
Q ss_pred cCccceeeeecccCCHHHHHHHHHHcCC-hh---------------------------HHHHHHHHHHHcCChhhHHHHH
Q 002502 640 TDPDYRFELAIQLGRLEVAQEIATEVQS-ES---------------------------KWKQLGELAMSTGKLEMAEGCM 691 (915)
Q Consensus 640 ~~~~~~f~~~l~l~~~~~A~~~a~~~~~-~~---------------------------~w~~la~~al~~~~~~~A~~~y 691 (915)
.|-+.-|+.+|.|-+...|+-+|++.+- |. .=+.||..-+...-++.-.+.-
T Consensus 822 ~dvn~~~~~aLsLyd~slalliaq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi 901 (1243)
T COG5290 822 RDVNFFNEFALSLYDKSLALLIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYI 901 (1243)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 3444456888888888888888875432 11 0111111111111122222222
Q ss_pred HHcCCcchhHHHHHhcCCHHHHH--HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHH
Q 002502 692 KQAMDLSGLLLLYSSLGDAEGIS--KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSE 769 (915)
Q Consensus 692 ~~~~d~~~l~~l~~~~g~~~~~~--~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~ 769 (915)
.+-.-|+.++.+|+--|...... --+.-...+++.+.|..+|...|++.||...|.++++|.++.-++..-.+..+..
T Consensus 902 ~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~ 981 (1243)
T COG5290 902 CRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNL 981 (1243)
T ss_pred HhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHH
Confidence 34445677888888877655433 3455667788899999999999999999999999999999998877777766555
Q ss_pred HHHHHHH
Q 002502 770 IVAIWRK 776 (915)
Q Consensus 770 ~~~~w~~ 776 (915)
.-+....
T Consensus 982 ~AE~L~S 988 (1243)
T COG5290 982 CAELLPS 988 (1243)
T ss_pred HHHhhhh
Confidence 4333333
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.27 E-value=0.0017 Score=67.71 Aligned_cols=272 Identities=12% Similarity=0.125 Sum_probs=135.9
Q ss_pred EEcCCCCEEEEEEc---CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC
Q 002502 22 DLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (915)
Q Consensus 22 ~~sp~~~~la~~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 98 (915)
+|.+||+.|+.++. ...+.+.|+.+++..+--.+.........++|+++.++-......|+-.|+.|++....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57889988777665 456778899898776544432222335667899888877666678999999998877777776
Q ss_pred CCCEEEEEEc--CCCCEEEEEE----------------------cCCeEEEEECCCCceEEEEeecCCcceEEEEEecCC
Q 002502 99 TDYIRCVAVH--PTLPYVLSSS----------------------DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (915)
Q Consensus 99 ~~~i~~l~~s--~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (915)
.+.+-...|. .++..++-.- ....|...|+.++ ....++. ....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEE-ESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEe-cCccccCcccCCCC
Confidence 7766666664 4555544221 1234666677777 4444444 44567889999988
Q ss_pred CCEEEEEEC---CC-cEEEEECCC-CCCceEEecCC--CCeeEEEEEeCCCcCEEEEEEC---CCeEEEEECCCCcEEEE
Q 002502 155 TNTFASASL---DR-TIKIWNLGS-PDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 155 ~~~l~~~~~---dg-~i~i~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 224 (915)
+.+++.|.+ +. .-+||-+++ +.....+..+. ..+..=-|.|+|...+...... +..|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 888888765 22 125565433 22222222222 2233345778887522222222 33577778888765433
Q ss_pred ecCCccCeEEEEEeCCCCEEEEEEcCC----------------eEEEEeCCCceeeeee---------ccCCc-cEEEEE
Q 002502 225 LEGHTHNVSAVCFHPELPIIITGSEDG----------------TVRIWHATTYRLENTL---------NYGLE-RVWAIG 278 (915)
Q Consensus 225 ~~~~~~~v~~v~~~~~~~~l~~~~~dg----------------~v~iwd~~~~~~~~~~---------~~~~~-~v~~i~ 278 (915)
.. ......+-.+++|++++-=+.|. -|+++++..++..... ..+.. .-....
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 22 12345566778988776433332 4566777765532111 11110 124578
Q ss_pred EecCCCeEEEEec-CCeEEE
Q 002502 279 YMKSSRRIVIGYD-EGTIMV 297 (915)
Q Consensus 279 ~s~~~~~l~~g~~-dg~v~i 297 (915)
|+|||+.++..++ .|...+
T Consensus 358 FSPDgk~VlF~Sd~~G~~~v 377 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAV 377 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EE
T ss_pred cCCCCCEEEEECCCCCCccE
Confidence 9999988776554 344333
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=2.6e-07 Score=98.07 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=137.6
Q ss_pred CCCCEEEEEEcCC--CCEEEEEEcCCeEEEEECCCCcee--EEEEecCCCEEEEEEeC-CCCEEEEEeC----CCeEEEE
Q 002502 14 RSERVKSVDLHPS--EPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVA-RKQWVVAGAD----DMFIRVY 84 (915)
Q Consensus 14 h~~~v~~~~~sp~--~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~g~~----dg~i~vw 84 (915)
....+.|++++-+ ...+++|..+|.|.+-..+...-- ....++..++++++|++ |.++||+|-+ |..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456888888764 357889999999999887654322 33456788999999998 5677888743 6789999
Q ss_pred ECCCC--cee--EEEec-CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEE
Q 002502 85 NYNTM--DKV--KVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (915)
Q Consensus 85 d~~~~--~~~--~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (915)
|+.++ .+. ..|.+ ......+++|-.+.+.+++|.....+.++|++.. +.+...-.+..+..+...|-.+++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCcee
Confidence 99876 221 22222 3345668999999999999999989999999843 22222223345666777776677887
Q ss_pred EEECCCcEEEEE-CCCCC-CceEEe----cCCCCeeEEEEEeCCCcCEEEEEE-CCCeEEEEECC
Q 002502 160 SASLDRTIKIWN-LGSPD-PNFTLD----AHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ 217 (915)
Q Consensus 160 ~~~~dg~i~i~d-~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 217 (915)
+-. ||.|.+|| .++-+ +...+. .....+..++|+|...+ ++++.. +.++|+++|+.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 765 99999999 33322 222221 12335899999998876 455544 55889999875
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.21 E-value=0.00058 Score=73.53 Aligned_cols=265 Identities=10% Similarity=0.084 Sum_probs=134.6
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------
Q 002502 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------- 88 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~-------- 88 (915)
.|+.++|+++..-|++|..+|.|.||.+...+.-. .....+-..+.+.+- ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58999999998899999999999999876543221 000011111111110 00011111222211
Q ss_pred -CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE-eec------CCcceEEEEEec----CCC-
Q 002502 89 -MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEG------HSHYVMQVTFNP----KDT- 155 (915)
Q Consensus 89 -~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~------~~~~i~~~~~~p----~~~- 155 (915)
......+....++|++++.|.-| ++++|..+|.+.|.|++....+... +.. ....++++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12233445568899999998554 9999999999999999887443331 112 234677888863 222
Q ss_pred --CEEEEEECCCcEEEEECC--C-CCCce----EEecCCCCeeEEEEEe-CC------------------CcCEEEEEEC
Q 002502 156 --NTFASASLDRTIKIWNLG--S-PDPNF----TLDAHQKGVNCVDYFT-GG------------------DKPYLITGSD 207 (915)
Q Consensus 156 --~~l~~~~~dg~i~i~d~~--~-~~~~~----~~~~~~~~v~~~~~~~-~~------------------~~~~l~~~~~ 207 (915)
-.+++|+..|.+.+|.+. . +.... ....+..+|..+.... +. .-+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 468899999999999874 1 11111 1123555665555331 11 0112445555
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEe-----CCCCEEEEEEcCCeEEEEeCCCceeeeeeccCC----ccEEEEE
Q 002502 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----PELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIG 278 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~ 278 (915)
+..++++...+.+..............+++- ..+..|++-..+|.|++|.+..-+.+..+..+. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7789999988777655544222223344442 355678888899999999999888777666532 2233455
Q ss_pred EecCCCeEEEEe
Q 002502 279 YMKSSRRIVIGY 290 (915)
Q Consensus 279 ~s~~~~~l~~g~ 290 (915)
++++|..++..+
T Consensus 314 is~~Gdi~~~~g 325 (395)
T PF08596_consen 314 ISRNGDIFYWTG 325 (395)
T ss_dssp E-TTS-EEEE-S
T ss_pred ECCCCCEEEEeC
Confidence 566666554443
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.00077 Score=67.15 Aligned_cols=201 Identities=8% Similarity=0.117 Sum_probs=120.6
Q ss_pred hhcccCCCCEEEEEEcCCCC-EEEEEEcCCeEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 002502 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~-~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (915)
+.+.+-...+..++|+|+.. ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 44556667799999999866 4555566888888885 58888887754 356888999888876666656899999988
Q ss_pred CCCc------eeEEEe-----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC---CceEE-EEe------ecCCcce
Q 002502 87 NTMD------KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCT-QIF------EGHSHYV 145 (915)
Q Consensus 87 ~~~~------~~~~~~-----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~-~~~------~~~~~~i 145 (915)
.... ....+. .++..+..++|+|.++.|+++-......+|.+.. ..... ... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3221 112222 3455689999999988888888776767776654 11111 111 1123457
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCC---------CCeeEEEEEeCCCcCEEEEEECCCeEEEE
Q 002502 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.++.++|..+++++.+..+..|..+| .++++...+.-.. ...-.|++.++|+ |.+.+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC---EEEEcCCceEEEe
Confidence 89999998888888888899999999 5666655553222 2456888988775 6666666666554
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00011 Score=80.84 Aligned_cols=155 Identities=13% Similarity=0.149 Sum_probs=112.3
Q ss_pred cccCCCCEEEEEEcCC-------------CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC-----CCEE
Q 002502 11 LAQRSERVKSVDLHPS-------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-----KQWV 72 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~-------------~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l 72 (915)
|..|.+.|.-..+.-. |.++++++.||.|.|..+-+.+...++. ...++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 4457766666555444 9999999999999999998888877776 5578999999998 5789
Q ss_pred EEEeCCCeEEEEECC--CCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCC-----cce
Q 002502 73 VAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-----HYV 145 (915)
Q Consensus 73 ~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~i 145 (915)
++|+..| +.++.-+ ..+....+....++|.++.|. |++||-++++| |++||..++..+..+-..+. ...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fp 208 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFP 208 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCC
Confidence 9999988 7777532 112222455667899999997 67888888877 89999998855554433332 123
Q ss_pred EEEEEecCCCCEEEEEECCCcEEEEECC
Q 002502 146 MQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (915)
..+.|.+ .+.++.| ...+|++..++
T Consensus 209 phl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 5677875 5566665 44578888876
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.17 E-value=0.0024 Score=69.85 Aligned_cols=224 Identities=9% Similarity=-0.004 Sum_probs=125.1
Q ss_pred EEEEcCCCCEEEEEEcC-----------CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 002502 20 SVDLHPSEPWILASLYS-----------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~ 88 (915)
.++.+|.|..+|+...+ ..|+||+ ..|+++.++.-..+.+.++.|+.+. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 45677777777776543 1599999 5777888777666899999998865 56667799999999986
Q ss_pred CceeEEE-------ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCc---------ceEE-EEEe
Q 002502 89 MDKVKVF-------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH---------YVMQ-VTFN 151 (915)
Q Consensus 89 ~~~~~~~-------~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~i~~-~~~~ 151 (915)
|+....+ .-....+....+..+| +++-..++.+.+.+--......+.+..-.. .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 3331111 1112223333444455 333344555554432221111111100000 0000 1233
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC-cc
Q 002502 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-TH 230 (915)
Q Consensus 152 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 230 (915)
. +....+....++.+.+.+-...+. +. ..+++..++.||+++ +++.-..+|.+.+.+..-.+....+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 2 333444444455555443322111 11 246899999999988 7888888999999987666666655543 34
Q ss_pred CeEEEEEeCCCCEEEEEEcCCeEEEEe
Q 002502 231 NVSAVCFHPELPIIITGSEDGTVRIWH 257 (915)
Q Consensus 231 ~v~~v~~~~~~~~l~~~~~dg~v~iwd 257 (915)
....+.|+.+...++.- ...|.+..
T Consensus 261 ~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 261 PPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 56678887764333322 33455544
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.016 Score=62.78 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=40.2
Q ss_pred eeeecccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHH
Q 002502 646 FELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEG 689 (915)
Q Consensus 646 f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~ 689 (915)
|...|.-++++.|+.+|-.+.+..+.-.+--.|+..|+.++|+.
T Consensus 501 FhhLLR~~rfekAFlLAvdi~~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 501 FHHLLRYQRFEKAFLLAVDIGDRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHhhHHHHHHHHHHhccchHHHHHHHHHHHhccchhhhhc
Confidence 67788899999999999999999999999999999999999964
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00067 Score=74.95 Aligned_cols=217 Identities=12% Similarity=0.017 Sum_probs=135.5
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCceeEEEEec-CCCEEEEE-------------------EeCCCCEEEEEe-CCCeEEE
Q 002502 26 SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAK-------------------FVARKQWVVAGA-DDMFIRV 83 (915)
Q Consensus 26 ~~~~la~~~~-dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~-------------------~s~~~~~l~~g~-~dg~i~v 83 (915)
||+||.+-.. ++.|..-+++..+.-+.+... ...+..+. ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888888765 667777777766554444321 11222222 344565543322 2467888
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC----CeEEEEECCCCceEEEEeecCCcceEEEEEec-------
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP------- 152 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p------- 152 (915)
.|..+.+...++.-. +....++++|+|+++++.+.+ +++...+.... . ..+.|++
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----------d--~~vvfni~~iea~v 285 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----------D--WVVVFNIARIEEAV 285 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccC-----------c--eEEEEchHHHHHhh
Confidence 888888777776542 245678999999999888632 22322222211 1 2233332
Q ss_pred CCCCEEEEEECCCcEEEEECCC----CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-------
Q 002502 153 KDTNTFASASLDRTIKIWNLGS----PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------- 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------- 221 (915)
.+++.... .++.|.+.|..+ +......-.-......+.++|+|.. +++++..+.+|.++|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 15555555 357899999987 3333333335566789999999984 445555689999999987542
Q ss_pred -----EEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC
Q 002502 222 -----VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (915)
Q Consensus 222 -----~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (915)
+.....-.+ ....+|.++|....+-.-|..|..|++.+
T Consensus 363 ~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333333223 34678999998888888899999999875
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.12 E-value=0.0075 Score=67.14 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=137.3
Q ss_pred CEEEEEEcCCCCEEEEEEc-CC----eEEEEECCCCceeEEE-EecCCCEEEEEEeCCCCEEEEEeCC-----------C
Q 002502 17 RVKSVDLHPSEPWILASLY-SG----TVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAGADD-----------M 79 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-dg----~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~d-----------g 79 (915)
.+..+++||+|+++|.+.. .| .++|+|+.+|+.+... .... ...+.|.++++.|+....+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3446899999999997643 44 4999999999776532 2221 2349999998887766432 2
Q ss_pred eEEEEECCCCcee--EEEecCCC-C-EEEEEEcCCCCEEEEEEcC----CeEEEEECCCC----ceEEEEeecCCcceEE
Q 002502 80 FIRVYNYNTMDKV--KVFEAHTD-Y-IRCVAVHPTLPYVLSSSDD----MLIKLWDWEKG----WMCTQIFEGHSHYVMQ 147 (915)
Q Consensus 80 ~i~vwd~~~~~~~--~~~~~~~~-~-i~~l~~s~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~i~~ 147 (915)
.|..|.+.+...- ..+..... . ...+..++++++|++.+.. ..+.+.+...+ ...........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776443 45544333 3 6788999999998765432 34778888763 2333333333333333
Q ss_pred EEEecCCCCEEEEEEC---CCcEEEEECCCCCC---ceEEecCCCCeeEEEEEeCCCcCEEEEEECCC--eEEEEECCCC
Q 002502 148 VTFNPKDTNTFASASL---DRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTK 219 (915)
Q Consensus 148 ~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 219 (915)
+... ++.+++.... ++.|...++.+... ...+..+...+.-..+...++. +++....++ .|+++++..+
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-T
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCC
Confidence 4333 3434443322 45677788877663 2244455554444444444542 444444444 5888998834
Q ss_pred cEEEEecC-CccCeEEEEEeCCCCEEEE--EE--cCCeEEEEeCCCceee
Q 002502 220 SCVQTLEG-HTHNVSAVCFHPELPIIIT--GS--EDGTVRIWHATTYRLE 264 (915)
Q Consensus 220 ~~~~~~~~-~~~~v~~v~~~~~~~~l~~--~~--~dg~v~iwd~~~~~~~ 264 (915)
.....+.. ..+.|..+...++++.+.. .| .-+++.-||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444432 3344566665666654332 22 2356888888887643
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00019 Score=78.06 Aligned_cols=183 Identities=12% Similarity=0.073 Sum_probs=115.1
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEc---C-CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CC--eEEE
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLY---S-GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DM--FIRV 83 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~---d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg--~i~v 83 (915)
+..-...+..-+|+|++..++.... . ..+.++++.++....... ..+.-...+|+|||++|+.... || .|.+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 4444566778899999998775432 2 459999999887665554 3444556799999999886644 55 5666
Q ss_pred EECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEc-CC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+|+.++... .+....+.-..-.|+|+|++|+-.++ .| .|.+++++.+.....+..... -..-.|+| ++.+++.
T Consensus 267 ~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~Sp-dG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSP-DGDKIVF 342 (425)
T ss_pred EcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC--CcCccCCC-CCCEEEE
Confidence 677766533 34433333346789999999886654 33 466777777633222222222 22778999 8888887
Q ss_pred EECC-Cc--EEEEECCCCCCceEEecCCCCeeEEEEEeCCCc
Q 002502 161 ASLD-RT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDK 199 (915)
Q Consensus 161 ~~~d-g~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (915)
.+.. |. |.+.|+.++.....+ ........-+|.+++..
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~ 383 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRM 383 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCce
Confidence 7643 44 666666655543332 23333345566666663
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0025 Score=68.66 Aligned_cols=229 Identities=11% Similarity=0.166 Sum_probs=119.6
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECC--------C
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--------K 130 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~--------~ 130 (915)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-..+.+.+- ...++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876533322 000011111111110 0011111222322 2
Q ss_pred CceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEec--------CCCCeeEEEEEe---CCC-
Q 002502 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--------HQKGVNCVDYFT---GGD- 198 (915)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v~~~~~~~---~~~- 198 (915)
+..+...+....++|++++.+ +-.++++|..+|.+.|.|++.+..+..-.- ....++++.|.. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 334455555668899999998 578999999999999999988776655321 234577787763 232
Q ss_pred --cCEEEEEECCCeEEEEECCC---CcE----EEEecCCccCeEEEE-EeCCC--------------------C-EEEEE
Q 002502 199 --KPYLITGSDDHTAKVWDYQT---KSC----VQTLEGHTHNVSAVC-FHPEL--------------------P-IIITG 247 (915)
Q Consensus 199 --~~~l~~~~~dg~i~iwd~~~---~~~----~~~~~~~~~~v~~v~-~~~~~--------------------~-~l~~~ 247 (915)
...+++|...|.+.+|.+-- +.. ......+.++|..+. ++.+. + +++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 24789999999999997641 221 112223556665555 32221 1 44444
Q ss_pred EcCCeEEEEeCCCceeeeeeccCCccEEEEEE-----ecCCCeEEEEecCCeEEEe
Q 002502 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGY-----MKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-----s~~~~~l~~g~~dg~v~i~ 298 (915)
+ +..++++...+.+..............+++ ...+..|++-..+|.++++
T Consensus 233 S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred c-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 4 668999998877765544422122333444 2356667777777777763
No 348
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.07 E-value=0.02 Score=58.82 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=156.4
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCceeEEEecCCC------
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMDKVKVFEAHTD------ 100 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~------ 100 (915)
+.+.|+|.++++.+-.+...-. -.+..+|+++.+.+++. .-.|.+||..|......+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999988777764332 33667999999887532 33699999999988776542222
Q ss_pred -CEEEEEEcCCCCEEEEEEc--CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECC-CCC
Q 002502 101 -YIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPD 176 (915)
Q Consensus 101 -~i~~l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~-~~~ 176 (915)
....+.++.+++++++... ..+|.|.|+..+ +....+..- + |....|..+..|.+-|.||++.-..+. .++
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 1234678899998877643 467999999988 444443321 2 222234345678899999999999887 444
Q ss_pred CceEE----ecCCCCe-eEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE--EEEecCC----------ccCeEEEEEeC
Q 002502 177 PNFTL----DAHQKGV-NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGH----------THNVSAVCFHP 239 (915)
Q Consensus 177 ~~~~~----~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~----------~~~v~~v~~~~ 239 (915)
...+. .....++ ..-.+...+. .++-.+.+|.|+-.|+..... ...+... .+.-.-+++++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred EeEeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 43222 1112222 2333333333 455577889999988875542 2222110 11233477887
Q ss_pred CCCEEEEEEc---CC-------eEEEEeCCCceeeeeeccCCccEEEEEEecCCC-eEEEE-ecCCeEEEec
Q 002502 240 ELPIIITGSE---DG-------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIG-YDEGTIMVKI 299 (915)
Q Consensus 240 ~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~-~l~~g-~~dg~v~i~~ 299 (915)
....|++--. +| .|-++|+.+++.+..+... ..+.+++.+.+.+ +|.+. ..++.+.++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6665554322 11 3888899999999888754 4677999998876 44333 3467788753
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00055 Score=74.65 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=101.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCC
Q 002502 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP 177 (915)
Q Consensus 98 ~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 177 (915)
+...|.--+++..+++++.|+.-|.+++|+-.++........+..+.+..+..++ +..++|.|+..|.|.++-++...+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4455666677788999999999999999998887555555545556667777887 788899999999999998876443
Q ss_pred ceEE------ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC----cEEEEecCCccCeEEEEEeC
Q 002502 178 NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHTHNVSAVCFHP 239 (915)
Q Consensus 178 ~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~ 239 (915)
.... ..|...|++++|++++. .+.+|...|+|..-.+.+. -..+.+-.....|..+....
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred CcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2211 23678899999999998 5999999999998877661 11223333445666665543
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00048 Score=74.94 Aligned_cols=203 Identities=14% Similarity=0.102 Sum_probs=123.9
Q ss_pred CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEe---CC-CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCC
Q 002502 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA---DD-MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 112 (915)
..+.+=|.+ +...+.+......+..-+|+|+++.++..+ .. ..+.++++++++...... -.+.-...+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 344555543 555555655666788889999998876552 23 469999999887665554 122334578999999
Q ss_pred EEEEEE-cCCe--EEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC-CCc--EEEEECCCCCCceEEecCCC
Q 002502 113 YVLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQK 186 (915)
Q Consensus 113 ~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~ 186 (915)
+|+.++ .||. |+++|+.++. ..+ +....+.-..-.|+| +++.++..+. .|. |.+++...... ..+.....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~ 326 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG 326 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-cee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC
Confidence 887554 4554 5666777763 222 333333334677999 6666665544 443 66677766554 33333333
Q ss_pred CeeEEEEEeCCCcCEEEEEEC-CCe--EEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002502 187 GVNCVDYFTGGDKPYLITGSD-DHT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 248 (915)
.-..-.|+|+|+. ++..+. +|. |.+.|+.++...+.+. .......-+|.|++..+...+
T Consensus 327 ~~~~p~~SpdG~~--i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 327 GNSNPVWSPDGDK--IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCcCccCCCCCCE--EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 3347889999984 544443 454 6667776655444443 333344567888887666544
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.99 E-value=0.00017 Score=77.54 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=82.8
Q ss_pred EEEEEEcCCCC-EEEEE----EcCCe----EEEEECCCCceeEE--E-EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 18 VKSVDLHPSEP-WILAS----LYSGT----VCIWNYQSQTMAKS--F-EVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 v~~~~~sp~~~-~la~~----~~dg~----v~iwd~~~~~~~~~--~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
..++.||-..+ .+.+. +.+|. -.+|++...+..+. . -.....|.|++++|+.+.++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46667776433 33332 12343 45677655433221 1 13677899999999999999999999999999
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
..++... +....-.++.++|+|+|..+++|+..|.+.+||+.-+....+.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 8765333 2234456789999999999999999999999998765333333
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.98 E-value=0.0013 Score=71.04 Aligned_cols=230 Identities=10% Similarity=0.101 Sum_probs=130.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecC------------------CCEEEEEEeCCCCEEEEEe
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE------------------LPVRSAKFVARKQWVVAGA 76 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l~~g~ 76 (915)
...+....|||+|+++|... ++.|.+++..++...+ ++... +.-..+-|||||++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 46688899999999999886 6899999987774332 22111 1235688999999998753
Q ss_pred CC-C-----------------------------------eEEEEECCCCceeEE--E---ecCCCCEEEEEEcCCCCEEE
Q 002502 77 DD-M-----------------------------------FIRVYNYNTMDKVKV--F---EAHTDYIRCVAVHPTLPYVL 115 (915)
Q Consensus 77 ~d-g-----------------------------------~i~vwd~~~~~~~~~--~---~~~~~~i~~l~~s~~~~~l~ 115 (915)
.| . .+.|+|+.+++.... . ......+..+.|.+++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 21 1 133455555443211 1 12334678899999988444
Q ss_pred EE--EcC---CeEEEEECCCCceEEEEeecCCcce---EEEEEe-cCCCCEEEEEECCCcEEE--EECCCCCCceEEecC
Q 002502 116 SS--SDD---MLIKLWDWEKGWMCTQIFEGHSHYV---MQVTFN-PKDTNTFASASLDRTIKI--WNLGSPDPNFTLDAH 184 (915)
Q Consensus 116 ~~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~i---~~~~~~-p~~~~~l~~~~~dg~i~i--~d~~~~~~~~~~~~~ 184 (915)
.. +.+ ..+.++|..++.............| ....|. +++..++.....+|--++ ++..++. ...+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence 33 222 3466778776633222222222222 244454 645666666667776444 4554443 3344445
Q ss_pred CCCeeE-EEEEeCCCcCEEEEEEC----CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEE
Q 002502 185 QKGVNC-VDYFTGGDKPYLITGSD----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 185 ~~~v~~-~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 248 (915)
.-.|.. +.|.+.++. +++++.. ...|...++..+..+..+......-..+.|||++++++...
T Consensus 279 ~~~V~~i~~~d~~~~~-iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNR-IYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-EEEEEEEECTSSE-EEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceeecccceEcCCCCE-EEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 555644 566666553 4455554 23566667763444555554443336899999999877554
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.97 E-value=0.0051 Score=61.35 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=113.8
Q ss_pred EEecCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002502 53 FEVTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 53 ~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
+.+-...+..++|+|+.+. +++....+.|..++. +|+.+..+.-. .+....+++..++.++++.-.++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 4444556999999998664 555566788888886 47888777533 35688899988887666655689999998843
Q ss_pred Cc-----eEEEEe-----ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCC---CCCceEE--------ecCCCCee
Q 002502 131 GW-----MCTQIF-----EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTL--------DAHQKGVN 189 (915)
Q Consensus 131 ~~-----~~~~~~-----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~--------~~~~~~v~ 189 (915)
.. ...+.+ ..++..+-.++|+| .++.|+++....-..+|.+.. ....... ......+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 111111 12455689999999 666666777776667776654 2111111 12334578
Q ss_pred EEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCc---------cCeEEEEEeCCCCEEEEEEcCCeEEEE
Q 002502 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~v~~~~~~~~l~~~~~dg~v~iw 256 (915)
.+.+.|.... +++....+..|..+| .+|+++..+.-.. ...-.|+|.++|.+. ..++-+..++|
T Consensus 175 ~l~~~p~t~~-lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGH-LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTE-EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred ceEEcCCCCe-EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 8999887654 677777888999999 5688766554222 246789999998644 44566655554
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.01 Score=64.99 Aligned_cols=191 Identities=8% Similarity=0.008 Sum_probs=105.7
Q ss_pred eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee--cCCcce-----EEEEEec
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--GHSHYV-----MQVTFNP 152 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i-----~~~~~~p 152 (915)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+... . ...+. .....| ....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCC
Confidence 58889864 67777665444899999999865 5667778999999999754 2 11111 011112 2222221
Q ss_pred CCCCEEEEEECCCcEEEEECCCCC-CceEEecCCC---------CeeE-EEEEeCCCcCEEEEEECCCeEEEEECCCCcE
Q 002502 153 KDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQK---------GVNC-VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (915)
Q Consensus 153 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (915)
+| ++.-..++.+.+..-.... ....+..... .... ..++.+ ....+....++.+.+.+-...+.
T Consensus 138 -~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~--~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 138 -NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD--RVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred -CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC--cceEEEEecCCEEEEEEcccccc
Confidence 22 4444455555544322211 1111110000 0001 112222 22344444455555444322111
Q ss_pred EEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC-CccEEEEEEecCC
Q 002502 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSS 283 (915)
Q Consensus 222 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~s~~~ 283 (915)
+. ..+++..++.||+|++||.-..+|.+.+.+..-.+....+... ......+.|+-+.
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 22 2468999999999999999999999999886655555555544 3456778887664
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=3.4e-06 Score=89.83 Aligned_cols=196 Identities=20% Similarity=0.304 Sum_probs=129.3
Q ss_pred CCCEEEEEEcCCC--CEEEEEEcCCeEEEEECCCCceE-EEEeecCCcceEEEEEecCCCCEEEEEEC----CCcEEEEE
Q 002502 99 TDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASL----DRTIKIWN 171 (915)
Q Consensus 99 ~~~i~~l~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~----dg~i~i~d 171 (915)
...+.|++++-+. ..+++|..+|.|.+-..+...-. .....++..+.++++|++.|.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4467778776544 46889999999999988754222 34556788899999999988888888743 56799999
Q ss_pred CCCC--CCc--eEEec-CCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeC-CCCEEE
Q 002502 172 LGSP--DPN--FTLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIII 245 (915)
Q Consensus 172 ~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~ 245 (915)
+.+. .|. ..+.+ ......+++|..+. +++++|...+.+.++|++.. +..........+..+...| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc--chhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 222 12222 34456688887444 38899999999999999832 2111112234566778888 666777
Q ss_pred EEEcCCeEEEEe-CCCce-eeeeeccC----CccEEEEEEecCCC--eEEEEecCCeEEEe
Q 002502 246 TGSEDGTVRIWH-ATTYR-LENTLNYG----LERVWAIGYMKSSR--RIVIGYDEGTIMVK 298 (915)
Q Consensus 246 ~~~~dg~v~iwd-~~~~~-~~~~~~~~----~~~v~~i~~s~~~~--~l~~g~~dg~v~i~ 298 (915)
+.. ||.|.+|| ..+-+ ++..+... ..++..++|+|... ..+..-+.++|+..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 765 99999999 33322 22222222 23589999999743 33334445566553
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=0.0019 Score=71.51 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=133.6
Q ss_pred EEEcCCCCEEEEEE-cCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCCceeEEE
Q 002502 21 VDLHPSEPWILASL-YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 21 ~~~sp~~~~la~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~ 95 (915)
+=++|||+.+...+ +.+.+.+.|..+.+...++.... ....+.++|+|+++++.+.+ +++...+..+...+..+
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf 276 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF 276 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence 33567887664433 36778889988888777776544 44778999999999888632 23333333322222222
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC----CceEEEEeecCCcceEEEEEecCCCCEEEE-EECCCcEEEE
Q 002502 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK----GWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRTIKIW 170 (915)
Q Consensus 96 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~i~i~ 170 (915)
... .+ -.+.++|++..++ ++.|.+.|..+ +......+. -......+.++| |+.++++ +..+.++.+.
T Consensus 277 ni~--~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVI 348 (635)
T PRK02888 277 NIA--RI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVI 348 (635)
T ss_pred chH--HH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEE
Confidence 110 00 1334578776663 56899999987 334444443 344568899999 7776655 4558999999
Q ss_pred ECCCCCC------------ceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC----------CcEEEEecCC
Q 002502 171 NLGSPDP------------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------KSCVQTLEGH 228 (915)
Q Consensus 171 d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~ 228 (915)
|+.+.+. ...... .......+|.++|. ...+-.-|..|..||+.+ ...+..+..|
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~--aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~ 425 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN--AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH 425 (635)
T ss_pred EChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC--EEEeEeecceeEEEehHHHHHHhccccCCcceecccCC
Confidence 9987543 122222 22334667766654 688888899999999875 2344445544
Q ss_pred ccCeEEE-----EEeCCCCEEEEEE
Q 002502 229 THNVSAV-----CFHPELPIIITGS 248 (915)
Q Consensus 229 ~~~v~~v-----~~~~~~~~l~~~~ 248 (915)
..+.... .-.|+|++|++..
T Consensus 426 y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 426 YQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CccceeeecCCCcCCCCCCEEEEcc
Confidence 4432221 2367888887764
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.013 Score=60.95 Aligned_cols=227 Identities=12% Similarity=0.164 Sum_probs=132.9
Q ss_pred CCCCEEEEEEcCCeEEEEECCC-CceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--------
Q 002502 25 PSEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-------- 95 (915)
Q Consensus 25 p~~~~la~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-------- 95 (915)
..++.|++|+.+| +.+++... ....+.. +..+|..+...|+-+.|++-+ |+.+.++++.+.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999888 89999833 3332222 333499999999888777765 499999998765443311
Q ss_pred ------ecCCCCEEEEE--EcCCCCEEEEEEcCCeEEEEECCCCc----eEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 96 ------EAHTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 96 ------~~~~~~i~~l~--~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
-.....+...+ -...+...++......|.+|.+.... ...+.+. ....+.+++|. ++.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEeC
Confidence 01223344444 11233334444445589999887531 1223322 34668899997 467777775
Q ss_pred CCcEEEEECCCCCCceEEecCC------------CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE--EecCCc
Q 002502 164 DRTIKIWNLGSPDPNFTLDAHQ------------KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHT 229 (915)
Q Consensus 164 dg~i~i~d~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 229 (915)
+ ...+.|+.++.....+.... .++..+... ++ .+|++ . +..-.+.|. .|++.+ .+.- .
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--e~Ll~-~-~~~g~fv~~-~G~~~r~~~i~W-~ 228 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN--EFLLC-Y-DNIGVFVNK-NGEPSRKSTIQW-S 228 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc--eEEEE-e-cceEEEEcC-CCCcCcccEEEc-C
Confidence 4 57888998766543332111 223333332 22 25554 3 233333443 354433 2221 2
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC
Q 002502 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 230 ~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
..+.++++.. ++|++.+. +.|.||++.++++++++...
T Consensus 229 ~~p~~~~~~~--pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYSS--PYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEEC--CEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3455666643 57777665 46999999999999888755
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.019 Score=62.52 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=165.5
Q ss_pred CEEEEEEcCCCCEEEEEEc-CCeEEEEECCCCceeEEE-EecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCceeE
Q 002502 17 RVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~~~~~~~ 93 (915)
....+...|++..+.+... ...+.+.+.. ....... ......-..++.++.+..+.+. ..++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566788888866555543 2245555544 2222221 1111334577888888855544 456899999988777766
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEc---CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEE
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKI 169 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~i 169 (915)
....-. ....++++++++.+.++.. ++++.+.|..+...... ......+ ..++++| +++.++... .++.|.+
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSV 186 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCc-ceEEECC-CCCeEEEEecCCCeEEE
Confidence 665322 5678999999988887765 68899999888844444 3333333 8899999 777555544 7889999
Q ss_pred EECCCCCCce-E---EecCCCCeeEEEEEeCCCcCEEEEEEC-CCeEEEEECCCCcEEEEecCCcc-CeEEEEEeCCCCE
Q 002502 170 WNLGSPDPNF-T---LDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPI 243 (915)
Q Consensus 170 ~d~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~ 243 (915)
.|..+..... . ..........+.+.+++..-|+..... ++.+...|..++........-.. ....+..+|+|..
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 9976554332 1 112223346788888888522222222 26899999888776654221111 4567899999998
Q ss_pred EEEEEc-CCeEEEEeCCCceeeeeeccCCc---cEEEEEEecC
Q 002502 244 IITGSE-DGTVRIWHATTYRLENTLNYGLE---RVWAIGYMKS 282 (915)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~---~v~~i~~s~~ 282 (915)
+.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888744 47899999888777766554422 3445555443
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.86 E-value=0.0059 Score=65.16 Aligned_cols=212 Identities=15% Similarity=0.216 Sum_probs=124.0
Q ss_pred CeEEEEECCCCceeEEEecC-CCCEEEE---EEcCC----CCEEEEEEc---------C-CeEEEEECCCC----ceEEE
Q 002502 79 MFIRVYNYNTMDKVKVFEAH-TDYIRCV---AVHPT----LPYVLSSSD---------D-MLIKLWDWEKG----WMCTQ 136 (915)
Q Consensus 79 g~i~vwd~~~~~~~~~~~~~-~~~i~~l---~~s~~----~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 136 (915)
+.|++.|..+.+.+..+.-. ...+.++ .+..+ .++|++|+. . |.|.++++... .++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888898888877666422 2334444 34432 467887754 2 89999999883 12222
Q ss_pred -EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEE
Q 002502 137 -IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (915)
Q Consensus 137 -~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (915)
......++|++++-- ++. ++++. ++.|.+|++...+.......+..++...+....++ ++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEE
Confidence 223456788888866 344 55444 58899999987773333333333334444444444 899999888888875
Q ss_pred CCC-CcEEEEec--CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCC-------c--eee--eeeccCCccEEEE---E
Q 002502 216 YQT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-------Y--RLE--NTLNYGLERVWAI---G 278 (915)
Q Consensus 216 ~~~-~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~-------~--~~~--~~~~~~~~~v~~i---~ 278 (915)
++. +..+..+. .....++++.+-+++..++++..+|.+.++.... + ++. ..+..+ ..|+++ +
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-CccceEEEEE
Confidence 543 33233332 2345588888987767999999999999997652 1 222 222222 456666 4
Q ss_pred EecC--C------CeEEEEecCCeEEE
Q 002502 279 YMKS--S------RRIVIGYDEGTIMV 297 (915)
Q Consensus 279 ~s~~--~------~~l~~g~~dg~v~i 297 (915)
+.|. + ..++.++.+|.+..
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4441 2 23777888888774
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.054 Score=59.00 Aligned_cols=252 Identities=17% Similarity=0.173 Sum_probs=160.5
Q ss_pred EEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCCCEEEE
Q 002502 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLS 116 (915)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~ 116 (915)
+.+++..+......+..+. ....+...+++..+.+... ...+...+.. ...+... .........++.++.++.+.+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666655555554444333 4566788888865555433 2345555554 2222222 211144567889998886655
Q ss_pred EE-cCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECCCCCCceEEecCCCCeeEEE
Q 002502 117 SS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (915)
Q Consensus 117 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 192 (915)
.. .+..|.+.|..+.........+. ....++++| ++..+.++.. ++++.+.|..+.+..........+ ..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 44 45899999987764444444444 567889999 5655555544 688999998888877775444444 8899
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCcEEE-E---ecCCccCeEEEEEeCCCCEEEEEEcC---CeEEEEeCCCceeee
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-T---LEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLEN 265 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~---~~~~~~~v~~v~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~ 265 (915)
+.|++.. .+++-..++.|.++|.......+ . ..........+.++|+|..+.+.... +.+...|..++....
T Consensus 167 ~~p~g~~-vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 167 VDPDGNK-VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred ECCCCCe-EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999884 34444578999999977655442 1 01122334678999999966655433 589999988877665
Q ss_pred e-eccCCccEEEEEEecCCCeEEEEecC-CeEEE
Q 002502 266 T-LNYGLERVWAIGYMKSSRRIVIGYDE-GTIMV 297 (915)
Q Consensus 266 ~-~~~~~~~v~~i~~s~~~~~l~~g~~d-g~v~i 297 (915)
. ..........+..+|+|+.+.+.... +.+.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 5 22221145678999999988887444 55554
No 361
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.75 E-value=0.092 Score=59.65 Aligned_cols=191 Identities=9% Similarity=0.038 Sum_probs=116.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEE---E-------EEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002502 69 KQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIR---C-------VAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~---~-------l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
+..|++++.++.|.-+|..+|+.+..+.... ..+. + +++. +..++.++.|+.|.-.|.++++.+-+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577788888899999999999988775321 1111 1 1222 346788888999999999998544332
Q ss_pred eec-CCc--ceEE-EEEecCCCCEEEEEEC------CCcEEEEECCCCCCceEEecCCCC--------------------
Q 002502 138 FEG-HSH--YVMQ-VTFNPKDTNTFASASL------DRTIKIWNLGSPDPNFTLDAHQKG-------------------- 187 (915)
Q Consensus 138 ~~~-~~~--~i~~-~~~~p~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 187 (915)
-.. +.. .+.+ .... + ..+++++. +|.|..+|..+++.+..+......
T Consensus 147 ~~~~~~~~~~~tssP~v~--~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV--K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred ccccccccccccCCcEEE--C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 211 110 1111 1111 2 34555543 688999999998877665322110
Q ss_pred -----------ee-EEEEEeCCCcCEEEEEECC-----C-----------eEEEEECCCCcEEEEecCCccCeE------
Q 002502 188 -----------VN-CVDYFTGGDKPYLITGSDD-----H-----------TAKVWDYQTKSCVQTLEGHTHNVS------ 233 (915)
Q Consensus 188 -----------v~-~~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~v~------ 233 (915)
+. .+++.+..+ ++..+..+ + .|.-.|+++|+....++...+.+.
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~--lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETN--LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCccccCCCCccCceeEcCCCC--eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence 11 223333333 45554421 2 577789999998887765333222
Q ss_pred ---EEEEeCCCC---EEEEEEcCCeEEEEeCCCceeeee
Q 002502 234 ---AVCFHPELP---IIITGSEDGTVRIWHATTYRLENT 266 (915)
Q Consensus 234 ---~v~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~ 266 (915)
-+.+..+|+ .++.+..+|.+.+.|..+|+++..
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceecc
Confidence 222334665 788999999999999999987643
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.02 Score=64.96 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=138.3
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEEecCC----CEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCceeEEEec
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFEA 97 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~ 97 (915)
..+++++.+|.|.-.|..+|+.+........ .+.+.-..-++ .+++++. +|.|.-+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4577778899999999999998876653211 11111111133 4555543 68999999999998877542
Q ss_pred CCC-------------------------------CE-EEEEEcCCCCEEEEEEcC-----C-----------eEEEEECC
Q 002502 98 HTD-------------------------------YI-RCVAVHPTLPYVLSSSDD-----M-----------LIKLWDWE 129 (915)
Q Consensus 98 ~~~-------------------------------~i-~~l~~s~~~~~l~~~~~d-----g-----------~i~iwd~~ 129 (915)
-.. .+ ..+++.|...+++.+..+ + +|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 11 134666666666666522 2 56777888
Q ss_pred CCceEEEEeecCCcce---------EEEEEecCCCC---EEEEEECCCcEEEEECCCCCCceE--------E----ecCC
Q 002502 130 KGWMCTQIFEGHSHYV---------MQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFT--------L----DAHQ 185 (915)
Q Consensus 130 ~~~~~~~~~~~~~~~i---------~~~~~~p~~~~---~l~~~~~dg~i~i~d~~~~~~~~~--------~----~~~~ 185 (915)
++ +..-.+....+.+ .-+.... ++. .++.++.+|.+.+.|..+++++.. . ....
T Consensus 280 TG-~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TG-KIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cC-CEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 88 3333333221111 1122212 444 778899999999999998876421 0 0000
Q ss_pred -CCe----------------------------eEEEEEeCCCcCEEEEEE------------------------------
Q 002502 186 -KGV----------------------------NCVDYFTGGDKPYLITGS------------------------------ 206 (915)
Q Consensus 186 -~~v----------------------------~~~~~~~~~~~~~l~~~~------------------------------ 206 (915)
.++ ..++++|... ++++..
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g--~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTG--LFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCC--EEEEecccccccccccccccCCCCceeccccccCCC
Confidence 000 0133333222 222211
Q ss_pred ---CCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccC
Q 002502 207 ---DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (915)
Q Consensus 207 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (915)
.-|.|.-+|+.+++.............+. +.-.+.+++.++.+|.++.+|..||+.+...+..
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 12568888999998887765332222222 2224457778888999999999999999888765
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.72 E-value=0.05 Score=56.62 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEe--------
Q 002502 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-------- 225 (915)
Q Consensus 154 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 225 (915)
.++.|+.|+.+| +.++++.......... +...|..+...+.-+ .+++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578999999988 8999983333222222 333488998888766 344443 599999998764332210
Q ss_pred ------cCCccCeEEEE--EeCCC-CEEEEEEcCCeEEEEeCCCc-----eeeeeeccCCccEEEEEEecCCCeEEEEec
Q 002502 226 ------EGHTHNVSAVC--FHPEL-PIIITGSEDGTVRIWHATTY-----RLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 226 ------~~~~~~v~~v~--~~~~~-~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
......+...+ -.+.+ ..|+++ ....|.+|..... +....+..+ ..+.+++|. ++.+++|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeC
Confidence 11223344444 11233 344444 4558888876542 455666555 678889998 678888988
Q ss_pred CCeEEEec
Q 002502 292 EGTIMVKI 299 (915)
Q Consensus 292 dg~v~i~~ 299 (915)
++...+.+
T Consensus 157 ~~f~~idl 164 (275)
T PF00780_consen 157 KGFYLIDL 164 (275)
T ss_pred CceEEEec
Confidence 88777753
No 364
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.71 E-value=0.17 Score=58.17 Aligned_cols=455 Identities=13% Similarity=0.141 Sum_probs=210.3
Q ss_pred CCEEEEEEcCC----CCEEEEEEc---CCeEEEEECCCCc-eeEE--EEecCCCEEEEE--EeCC-CCEEEEEeCCCeEE
Q 002502 16 ERVKSVDLHPS----EPWILASLY---SGTVCIWNYQSQT-MAKS--FEVTELPVRSAK--FVAR-KQWVVAGADDMFIR 82 (915)
Q Consensus 16 ~~v~~~~~sp~----~~~la~~~~---dg~v~iwd~~~~~-~~~~--~~~~~~~v~~~~--~s~~-~~~l~~g~~dg~i~ 82 (915)
++|..+..-.. ++.+++++. ||+++|....-+- .... +.+ -..+..+. +.++ ..+|+.+-.+- -+
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~e-Tr 431 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISE-TR 431 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccc-eE
Confidence 46777766542 235555543 8999998743221 1111 222 23455555 3332 23565554433 33
Q ss_pred EEECCCCceeEE-EecCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 83 VYNYNTMDKVKV-FEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 83 vwd~~~~~~~~~-~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+..+.. +...+ ..+-......+..|. .++.|+=.+. ..|++++-.. ....+....+ ++....+- +...++.
T Consensus 432 vl~i~~-e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~~---~~~~W~~p~~-~ti~~~~~-n~sqVvv 504 (1096)
T KOG1897|consen 432 VLNISE-EVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSAG---LRSEWRPPGK-ITIGVVSA-NASQVVV 504 (1096)
T ss_pred EEEEcc-ceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcchh---hhhcccCCCc-eEEEEEee-cceEEEE
Confidence 444432 21111 111222222333332 2333333332 2466665441 1122222222 22222222 4556777
Q ss_pred EECCCcEEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcC----EEEEEECCCeEEEEECC-CCcEEEEe--cC--Ccc
Q 002502 161 ASLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKP----YLITGSDDHTAKVWDYQ-TKSCVQTL--EG--HTH 230 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~----~l~~~~~dg~i~iwd~~-~~~~~~~~--~~--~~~ 230 (915)
++.++.+...++....... .-......|.|+.++|-++.+ ++++|.++..+.+.-.- +...+... .+ -..
T Consensus 505 A~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 505 AGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred ecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 7777777777765544111 112345779999999865432 68888887766554432 23222211 11 122
Q ss_pred CeEEEEEeCCCCEEEEEEcCCeEEEE--eCCCceeeeee--ccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcce-
Q 002502 231 NVSAVCFHPELPIIITGSEDGTVRIW--HATTYRLENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV- 305 (915)
Q Consensus 231 ~v~~v~~~~~~~~l~~~~~dg~v~iw--d~~~~~~~~~~--~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~- 305 (915)
.|.-.++-.+..+|.++..||.+.-| |..+|.....- ..+..++.=-.|+..++.-+.+..|.-..++..+..-+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 34455566667899999999998765 45555543222 22333444444444443333333333222221111100
Q ss_pred -----------eEEcC---CCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002502 306 -----------ASMDN---SGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (915)
Q Consensus 306 -----------~~~~~---~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (915)
..+.. ...++....+.+....+..... +. .+. -.....++.+++.+...++.+.
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk---------l~--irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK---------LH--IRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhh---------cc--eee-ecCCCChhheEecccceEEEEE
Confidence 00100 1112222333333333222111 10 111 1112356788888866666666
Q ss_pred cC------C---------cEEEEEeecccc---------cCccceeEEEEecC-CcEEEEec-----------CCeEEEe
Q 002502 372 GD------G---------EYIIYTALAWRN---------RSFGSALEFVWSSD-GEYAVRES-----------SSKIKIF 415 (915)
Q Consensus 372 ~~------~---------~~~i~~~~~~~~---------~~~~~~~~~~~s~d-g~~l~~~~-----------~~~v~v~ 415 (915)
++ + .+.+|+-.+.+. ...-++.+..|..| +.|++++. .|.|.||
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivf 812 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVF 812 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEE
Confidence 42 1 122333222221 11123455557766 56666553 1456665
Q ss_pred ccCc-ceeeee-----ecCcccceeecCcEEEEeeCCeEEEEeccCCcEEEEE---eccccEEEEcCCCCEEEEEeCC-e
Q 002502 416 SKNF-QEKRSV-----RPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRI---DVTVKNLYWADSGDLVAIASDT-S 485 (915)
Q Consensus 416 ~~~~-~~~~~~-----~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~---~~~i~~v~~s~dg~~la~~~~~-~ 485 (915)
...- .....+ +.+.-.-..+.|++|| +-+..|++|+|.+.+.++.- ..++..+...-.|..+++++-- .
T Consensus 813 e~~e~~~L~~v~e~~v~Gav~aL~~fngkllA-~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S 891 (1096)
T KOG1897|consen 813 EFEELNSLELVAETVVKGAVYALVEFNGKLLA-GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS 891 (1096)
T ss_pred EEecCCceeeeeeeeeccceeehhhhCCeEEE-ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce
Confidence 4322 111111 0011111112455554 34458999999988666542 2477788888889999988743 4
Q ss_pred EEEEEec
Q 002502 486 FYILKYN 492 (915)
Q Consensus 486 ~~~~~~~ 492 (915)
+-++.|.
T Consensus 892 itll~y~ 898 (1096)
T KOG1897|consen 892 ITLLQYK 898 (1096)
T ss_pred EEEEEEe
Confidence 4455543
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.68 E-value=0.035 Score=59.19 Aligned_cols=211 Identities=15% Similarity=0.253 Sum_probs=127.9
Q ss_pred CeEEEEECCCCceeEEEEecC-CCEEEEEE---eC----CCCEEEEEeC---------C-CeEEEEECCCC----ceeEE
Q 002502 37 GTVCIWNYQSQTMAKSFEVTE-LPVRSAKF---VA----RKQWVVAGAD---------D-MFIRVYNYNTM----DKVKV 94 (915)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~---s~----~~~~l~~g~~---------d-g~i~vwd~~~~----~~~~~ 94 (915)
+.|++.|..+.+.+.++.... ..+.+++. .. ...+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888887766533 23444433 32 2578888854 2 89999999884 22222
Q ss_pred E--ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEE
Q 002502 95 F--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (915)
Q Consensus 95 ~--~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d 171 (915)
+ ....++|++++-- +.+|+++. .+.|.+|++.... ............+.++... ++++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 2 2357889988876 33455554 4789999998875 3333333344467777765 56999999989988875
Q ss_pred CCCC-CCceEE--ecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-------Cc-E---EEEecCCccCeEEE--
Q 002502 172 LGSP-DPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KS-C---VQTLEGHTHNVSAV-- 235 (915)
Q Consensus 172 ~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~-~---~~~~~~~~~~v~~v-- 235 (915)
.+.. .....+ ......+.++.+.++++ .++++..+|.+.++.... +. . ...+. ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence 5432 222222 23345577888886764 799999999999998752 22 2 22222 33456666
Q ss_pred -EEeC--CC------CEEEEEEcCCeEEEE
Q 002502 236 -CFHP--EL------PIIITGSEDGTVRIW 256 (915)
Q Consensus 236 -~~~~--~~------~~l~~~~~dg~v~iw 256 (915)
++.| .+ +.++.++.+|.|...
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4445 12 247777888888743
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0002 Score=76.89 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=78.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcee
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~ 92 (915)
-...|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++..++.+++ +++|.|||+.|++|-.||+|++.|..++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34578999999999999999999999999987 777888887888887 9999999999999999999999999998776
Q ss_pred EEEe-cCCCCEEEEEEc
Q 002502 93 KVFE-AHTDYIRCVAVH 108 (915)
Q Consensus 93 ~~~~-~~~~~i~~l~~s 108 (915)
..+. .-...|.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 6532 123455666665
No 367
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.2 Score=55.98 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=75.1
Q ss_pred eecccCCHHHHHHHHHHcCCh-----hHHHHHHHHHHHc---CChhhHHHHHHHcCC--cchhHHHHHhcCCHHHHHHHH
Q 002502 648 LAIQLGRLEVAQEIATEVQSE-----SKWKQLGELAMST---GKLEMAEGCMKQAMD--LSGLLLLYSSLGDAEGISKLA 717 (915)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~~~~-----~~w~~la~~al~~---~~~~~A~~~y~~~~d--~~~l~~l~~~~g~~~~~~~l~ 717 (915)
-.+..+.+..|.++|+.++-+ ....++|....++ .+-+.+.+-=.|.++ ..++. ...+|
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS-----------y~~iA 514 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS-----------YAAIA 514 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee-----------HHHHH
Confidence 345667888999998866543 3556777777776 334444444444444 22222 25677
Q ss_pred HHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-ChHHHHHHHHHHhhh
Q 002502 718 SLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIVAIWRKDLQ 779 (915)
Q Consensus 718 ~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~-~~~~~~~~~w~~~L~ 779 (915)
+.|...|...+|..+..+--+-.+-+.+++++++.+.|+.=|..-+. +.+-.++-.-++.+.
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~ 577 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN 577 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 88888888888877777666666777777777777777755544433 555555544444443
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00032 Score=75.45 Aligned_cols=95 Identities=9% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE-EEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
...+.-+.|+|.-..+|++..+|.|.+..++ .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 788999987777777 99999999999999999999999999884444
Q ss_pred EEeecCCcceEEEEEec
Q 002502 136 QIFEGHSHYVMQVTFNP 152 (915)
Q Consensus 136 ~~~~~~~~~i~~~~~~p 152 (915)
.........|.++.|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43233344455555543
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.051 Score=56.44 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=131.0
Q ss_pred EEEcCCCCEEEE-EEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEe---
Q 002502 21 VDLHPSEPWILA-SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (915)
Q Consensus 21 ~~~sp~~~~la~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--- 96 (915)
..|.|+...|+- --..+.|+-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 357788775554 44578899999776643 3444 3344455555555555665533 35566666665533322
Q ss_pred --cCCCCEEEEEEcCCCCEEEEEEc-----------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEEC
Q 002502 97 --AHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (915)
Q Consensus 97 --~~~~~i~~l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (915)
......+.+...|+|.+-++... -|.|+.+|. .+ ...+....+-..-..++|+| +++.|+.+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 11234567888899886664433 144555554 33 45555555556668899999 7766666554
Q ss_pred -CCcEEEEECCC--CC---C--ceEEecCCCCeeEEEEEeCCCcCEEEEEECCC-eEEEEECCCCcEEEEecCCccCeEE
Q 002502 164 -DRTIKIWNLGS--PD---P--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSA 234 (915)
Q Consensus 164 -dg~i~i~d~~~--~~---~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 234 (915)
.+.|..|++.. +. . ...+....+..-.++...+|. +.+++..+| .|.+|+.. |+.+..+..+...+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~--lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN--LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC--EEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 47888887752 11 1 111222334455666655555 444554444 89999988 9999888877677888
Q ss_pred EEEeC-CCCEEEEEE
Q 002502 235 VCFHP-ELPIIITGS 248 (915)
Q Consensus 235 v~~~~-~~~~l~~~~ 248 (915)
++|-- +.+.|.+.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 88864 444444443
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.47 E-value=0.18 Score=52.08 Aligned_cols=270 Identities=9% Similarity=0.055 Sum_probs=123.0
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC----CcceEEEEEecCCCCEEEEEECCCcEEEEECCC
Q 002502 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (915)
Q Consensus 99 ~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 174 (915)
...+..|.|.....-+++| ..+.| +-..+.+.......... .....++.|.. ...+++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence 4578999999555555555 44544 33334442222222111 23466777763 4455554 445 33444445
Q ss_pred CCCceEEe---cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcE-EEEecCCccCeEEEEEeCCCCEEEEEEcC
Q 002502 175 PDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (915)
Q Consensus 175 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d 250 (915)
++.-..+. ........+....++ .....+..|.|..= ...|+. ........+.+..+.-+++|+++++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 54433332 112333344443333 24444455554332 122332 22334455778889999999988888766
Q ss_pred CeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeec
Q 002502 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (915)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~ 330 (915)
..+.-||.-...-...-.....+|.++.|+|++....++ ..|.+++-.. .+..--|.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~---------~~~~~~w~------------- 222 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD---------PDDGETWS------------- 222 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----------TTEEEEE--------------
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC---------CCCccccc-------------
Confidence 556677743211111112235789999999997765544 7777776210 00000000
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec---ccc-----cCccceeEEEEecCCc
Q 002502 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA---WRN-----RSFGSALEFVWSSDGE 402 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~---~~~-----~~~~~~~~~~~s~dg~ 402 (915)
....++......+..+++.+++...|+++.|.+.. +... |+. ........+.|.++.+
T Consensus 223 -------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 223 -------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp ---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred -------------cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 00111122233356889999999999988886554 3222 221 1234567778877777
Q ss_pred EEEEecCCeEEEe
Q 002502 403 YAVRESSSKIKIF 415 (915)
Q Consensus 403 ~l~~~~~~~v~v~ 415 (915)
-++.+.+|.|--|
T Consensus 289 gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE-STTEEEEE
T ss_pred eEEECCCcEEEEe
Confidence 7777777765443
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.46 E-value=0.057 Score=58.08 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred EEEEcCCCCEEEEEEcCCeEEE---EECCC-C----ceeEEEEe---cC--CCEEEEEEeC-----------CCCEEEEE
Q 002502 20 SVDLHPSEPWILASLYSGTVCI---WNYQS-Q----TMAKSFEV---TE--LPVRSAKFVA-----------RKQWVVAG 75 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~i---wd~~~-~----~~~~~~~~---~~--~~v~~~~~s~-----------~~~~l~~g 75 (915)
+++.+|++..||.+..+..+.+ |+... + .......+ ++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987665555 54311 1 12222221 11 4677776654 35789999
Q ss_pred eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcC
Q 002502 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (915)
Q Consensus 76 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 109 (915)
..+|.|++|.- +|..+..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999986 5666555556778888777653
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.0099 Score=68.64 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=99.7
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCC-----cCEEEEEECCCeEEEEECCCCc--EEEE-
Q 002502 154 DTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKS--CVQT- 224 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~- 224 (915)
+.++|+... ....|+-.|+..|+.+..+..+... ....+.|+.. ..-.+.|-++..+..||.|-.. ++..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 445555433 4578999999999999888876644 2344444321 1136778888899999998632 2211
Q ss_pred ec--CCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCcee-eeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 225 LE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 225 ~~--~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
.. ......+|++-+.+| +||+|+.+|.||+||- .|+. ...+.+-..+|..|..+.||++|++.+..-.+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 10 134568888888887 7999999999999994 4443 33444546899999999999999999888777763
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.18 Score=56.08 Aligned_cols=220 Identities=13% Similarity=0.082 Sum_probs=117.4
Q ss_pred EEEEEeCCCCEEEEEe-CC----CeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCC-----------eE
Q 002502 61 RSAKFVARKQWVVAGA-DD----MFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDM-----------LI 123 (915)
Q Consensus 61 ~~~~~s~~~~~l~~g~-~d----g~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg-----------~i 123 (915)
....++|+|++++.+- .. ..|+++|+.+++.+... .. . ....+.|.++++.|+....+. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-P-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-E-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-c-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3578899999998763 33 36999999999776532 22 1 123499999988776554332 37
Q ss_pred EEEECCCCceE-EEEeecCCcc--eEEEEEecCCCCEEEEEECC----CcEEEEECCCC----CCceEEecCCCCeeEEE
Q 002502 124 KLWDWEKGWMC-TQIFEGHSHY--VMQVTFNPKDTNTFASASLD----RTIKIWNLGSP----DPNFTLDAHQKGVNCVD 192 (915)
Q Consensus 124 ~iwd~~~~~~~-~~~~~~~~~~--i~~~~~~p~~~~~l~~~~~d----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~ 192 (915)
+.|.+.+.... ..++...... ...+..++ ++++++..+.. ..+.+.++..+ .....+......+....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888766332 3444443332 56788888 77776654432 23777788764 23334443444443333
Q ss_pred EEeCCCcCEEEEEE---CCCeEEEEECCCCcE---EEEecCCcc--CeEEEEEeCCCCEEEEEEcCC--eEEEEeCCCce
Q 002502 193 YFTGGDKPYLITGS---DDHTAKVWDYQTKSC---VQTLEGHTH--NVSAVCFHPELPIIITGSEDG--TVRIWHATTYR 262 (915)
Q Consensus 193 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~v~~~~~~~~l~~~~~dg--~v~iwd~~~~~ 262 (915)
-+. ++. +++... ..+.|...++.+... ...+..+.. .+..+....+ .+++....++ .|+++++..+.
T Consensus 284 ~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCc
Confidence 233 332 333332 246777778876552 324444544 3555554433 3444444554 48889988333
Q ss_pred eeeeec-cCCccEEEEEEecCCCeE
Q 002502 263 LENTLN-YGLERVWAIGYMKSSRRI 286 (915)
Q Consensus 263 ~~~~~~-~~~~~v~~i~~s~~~~~l 286 (915)
....+. ...+.|..+...++++.+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEE
Confidence 333333 233445554444444443
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.35 E-value=0.014 Score=66.55 Aligned_cols=184 Identities=9% Similarity=0.021 Sum_probs=103.6
Q ss_pred CCEEEEEEcCCCCEEEEEE------cCC--eEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC---------
Q 002502 16 ERVKSVDLHPSEPWILASL------YSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--------- 78 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--------- 78 (915)
..+.+.++||+|+.+|... .++ .|.+++. .+.. ..+.. ......-.|+|+|++|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999888765 233 4555564 2323 33332 2247889999999988877543
Q ss_pred ---CeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEE---EECCCCceEE----EEeecCCcceEEE
Q 002502 79 ---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL---WDWEKGWMCT----QIFEGHSHYVMQV 148 (915)
Q Consensus 79 ---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~i~~~ 148 (915)
+.+.+.++..+.... ...+.|..+.|||||.+++... +|.|++ -....+.... .....-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333333322221 2245799999999999988766 477777 4434442111 1112233346789
Q ss_pred EEecCCCCEEEEEECCCcEEEEE--CCCCCCceEEec--CCCCeeEEEEEeCCCcCEEEEEECCCeEEE
Q 002502 149 TFNPKDTNTFASASLDRTIKIWN--LGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~i~d--~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
.|.+ ++. |+++..++.-.+|. +...... .+.. ...++..++-+++ -+++...+|.+.+
T Consensus 503 ~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~----~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS----TVYVTDARAVLQL 564 (591)
T ss_pred eEec-CCE-EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc----eEEEEcCCceEEe
Confidence 9997 555 55666555444454 4332221 1122 2455556655432 3555566664444
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.27 E-value=0.3 Score=50.44 Aligned_cols=230 Identities=12% Similarity=0.109 Sum_probs=105.8
Q ss_pred cCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE--ecC---CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCC
Q 002502 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--EAH---TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~---~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (915)
...++..+.|..+..-+++|. .+.| +-..+.|+.=... ... .-...++.|..+ ..++ ++..|. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCC
Confidence 456889999996666666664 4543 2222333221111 111 123567777643 3334 455553 4444455
Q ss_pred CceEEEEe--ecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce-EEecCCCCeeEEEEEeCCCcCEEEEEEC
Q 002502 131 GWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (915)
Q Consensus 131 ~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (915)
+....++. ..-......+.... +. .....+..|.|..- .+.++.=. ........+..+.-++++. +++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSR 164 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS---EEEEETT
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECc
Confidence 53443332 12223334444443 33 44444555655432 23333322 2334456677777777776 6777665
Q ss_pred CCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEe-CCCceeeee----eccCCccEEEEEEecC
Q 002502 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH-ATTYRLENT----LNYGLERVWAIGYMKS 282 (915)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~i~~s~~ 282 (915)
...+.-||.-...-...-+.....|.++.|.|++.+.+++ ..|.|++=+ ......... +....-.+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 5556678754222222223356789999999998766654 788888877 222222221 1122234789999998
Q ss_pred CCeEEEEecCCeEEE
Q 002502 283 SRRIVIGYDEGTIMV 297 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i 297 (915)
+...++|+ .|.+..
T Consensus 244 ~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV 257 (302)
T ss_dssp S-EEEEES-TT-EEE
T ss_pred CCEEEEeC-CccEEE
Confidence 77666555 444443
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.056 Score=53.56 Aligned_cols=165 Identities=10% Similarity=0.116 Sum_probs=118.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (915)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~ 89 (915)
..+-...|.++.|+|+.+.|.+......-.|+=..+|+.+.++... -...-.+.|..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455666999999999998888887777778877889999887642 233467889888888888777899999887654
Q ss_pred ceeEEEe---------cC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceE--EEEeecC-------CcceEEEEE
Q 002502 90 DKVKVFE---------AH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC--TQIFEGH-------SHYVMQVTF 150 (915)
Q Consensus 90 ~~~~~~~---------~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-------~~~i~~~~~ 150 (915)
..+..+. .+ +.....++|.|.+..|+.+-...-+.||.+...... ......+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 3222111 12 556789999999999999988888888876643111 1111111 134678889
Q ss_pred ecCCCCEEEEEECCCcEEEEECCCC
Q 002502 151 NPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
++..+++++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9878888898999998888887543
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.23 E-value=0.23 Score=48.82 Aligned_cols=242 Identities=14% Similarity=0.145 Sum_probs=138.4
Q ss_pred CCceeEEEEecCCCEEEEEEeCCCCE-EEEEeCCC-eEEEEECCCCceeEEEecCCCC--EEEEEEcCCCCEEEEEEcC-
Q 002502 46 SQTMAKSFEVTELPVRSAKFVARKQW-VVAGADDM-FIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVLSSSDD- 120 (915)
Q Consensus 46 ~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~l~~~~~d- 120 (915)
.|+.+.... -......++|+|.... ++.+-.-| ...++|.++.+...++...++. --.-.|||||.+|...-.|
T Consensus 57 aGk~v~~~~-lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 57 AGKIVFATA-LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred CCceeeeee-cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 344444332 2233455777776543 44444444 4668899888777666533332 2235799999988866443
Q ss_pred ----CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEE--------------------EEECCCCC
Q 002502 121 ----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK--------------------IWNLGSPD 176 (915)
Q Consensus 121 ----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~--------------------i~d~~~~~ 176 (915)
|.|-|||.+.+....-.+..|.-....+.|.+ |+..++.+. |-|. +.|..++.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~ 212 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGN 212 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccc
Confidence 88999999977666667777777777888998 888888764 3333 23323333
Q ss_pred CceE--Ee--cCCCCeeEEEEEeCCCcCEEEEEEC-CC-----eEEEEECCCCcEEEEecC-------CccCeEEEEEeC
Q 002502 177 PNFT--LD--AHQKGVNCVDYFTGGDKPYLITGSD-DH-----TAKVWDYQTKSCVQTLEG-------HTHNVSAVCFHP 239 (915)
Q Consensus 177 ~~~~--~~--~~~~~v~~~~~~~~~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~ 239 (915)
.+.+ +. .+.-.+..++.-+++. +..|+. .| --.+=-...++++.-+.. ....|-+|+.+.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgt---vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGT---VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCc---EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 2221 11 2334456666655554 444432 11 011111122344333321 223477888887
Q ss_pred CCCEEEEEE-cCCeEEEEeCCCceeeeeeccCCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 240 ELPIIITGS-EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 240 ~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
+..+++..+ ..+...+||..+|..+..-.... +.-.-+...-+++.+.+|.+.+.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d----aaGva~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVVSEAALPD----AAGVAAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEEecccccc----cccceeccCceEEecCCceEEec
Confidence 666666555 45568899999999776543321 22233344557777778887764
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.20 E-value=0.73 Score=53.38 Aligned_cols=401 Identities=12% Similarity=0.125 Sum_probs=198.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEE-ecCCCCEEEEEEcCCC------CEEEEEEcCCeEEEEECC-
Q 002502 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWE- 129 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~------~~l~~~~~dg~i~iwd~~- 129 (915)
+.++..+-+.+...++.++.++.+....+..+...... ......|.|+.++|-+ +++++|..+..+.+.-..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 34555555566667888777777777776655422221 1234579999999752 268888777655544332
Q ss_pred CCceEEEE-eec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCC--CCCceE--EecCCCCeeEEEEEeCCCcCEE
Q 002502 130 KGWMCTQI-FEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFT--LDAHQKGVNCVDYFTGGDKPYL 202 (915)
Q Consensus 130 ~~~~~~~~-~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~~~l 202 (915)
........ +.+ -...|.-..+-. +..+|.++..||.+..|-+.. +..... ..-...|+.--.|+..+.. .+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t-~v 645 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT-AV 645 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce-EE
Confidence 22122222 111 122344444543 578999999999987765543 322111 1122345555556555543 34
Q ss_pred EEEECCCeEEEEECCCCcEEEEecCCccCeEEEE-EeCC-C-CEEEEEEcCCeEEEEeCCCcee--eeeeccCCccEEEE
Q 002502 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC-FHPE-L-PIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWAI 277 (915)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~-~~~~-~-~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i 277 (915)
+++ +|+-..+|..+ ++.+.+--. -..+..+| |+.+ . ..++++. .+.+++.-+..-+. ++++..+ .....+
T Consensus 646 fa~-sdrP~viY~~n-~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI 720 (1096)
T KOG1897|consen 646 FAL-SDRPTVIYSSN-GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRI 720 (1096)
T ss_pred EEe-CCCCEEEEecC-CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhhe
Confidence 433 44445555533 443322111 11111121 2221 1 2345444 45677776654332 3333333 566788
Q ss_pred EEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCcee-eeeeeecCCccc--
Q 002502 278 GYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL-PLAVKELGTCDL-- 354 (915)
Q Consensus 278 ~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~-- 354 (915)
++.+....+.+.+..+...... +.....+..+. +-|.... .+...++..++.
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~----------------~~ee~~~s~l~---------vlD~nTf~vl~~hef~~~E~~~ 775 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEY----------------YGEEYEVSFLR---------VLDQNTFEVLSSHEFERNETAL 775 (1096)
T ss_pred EecccceEEEEEecccccchhh----------------cCCcceEEEEE---------EecCCceeEEeeccccccceee
Confidence 8888666666666544333210 00011111111 0111111 111111222221
Q ss_pred CCceEEECCC-CCEEEEEc-----------CCcEEEEEeecccc-------cCccceeEEEEecCCcEEEEecCCeEEEe
Q 002502 355 YPQSLKHNPN-GRFVVVCG-----------DGEYIIYTALAWRN-------RSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (915)
Q Consensus 355 ~~~~l~~s~~-g~~lav~~-----------~~~~~i~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~~v~v~ 415 (915)
.+-+..|..| +.+++||+ .|++++|....... .-.|.+.++.- -+|+++|. -+..|++|
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~-In~~vrLy 853 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG-INQSVRLY 853 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe-cCcEEEEE
Confidence 2234456666 77888875 37888887766211 11233333211 35566554 35678888
Q ss_pred ccCcceeeeeec-Ccccc-ee---ecCcEEEEeeCC---eEEEEeccCCcEEEEEe----ccccEEEEcCCCCEEEEEeC
Q 002502 416 SKNFQEKRSVRP-TFSAE-RI---YGGTLLAMCSND---FICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASD 483 (915)
Q Consensus 416 ~~~~~~~~~~~~-~~s~~-~i---~~g~~La~~~~~---~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~ 483 (915)
+...+..-.... -+.|. .+ ..|..+++++-= ++..|+-..|..+-..+ ...+.+.+-.+..++.+-..
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 755431111111 11111 01 147777777643 77888877766554433 25666777777777766666
Q ss_pred CeEEEEEec
Q 002502 484 TSFYILKYN 492 (915)
Q Consensus 484 ~~~~~~~~~ 492 (915)
.+++++.++
T Consensus 934 gNlf~v~~d 942 (1096)
T KOG1897|consen 934 GNLFTVRKD 942 (1096)
T ss_pred ccEEEEEec
Confidence 677777655
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.36 Score=51.28 Aligned_cols=213 Identities=13% Similarity=0.131 Sum_probs=102.7
Q ss_pred CceeEEEEe-c-CCCEEEEEEe-----------CCCCEEEEEe-CCCeEEEEECCCC----ceeEEEec---C----CCC
Q 002502 47 QTMAKSFEV-T-ELPVRSAKFV-----------ARKQWVVAGA-DDMFIRVYNYNTM----DKVKVFEA---H----TDY 101 (915)
Q Consensus 47 ~~~~~~~~~-~-~~~v~~~~~s-----------~~~~~l~~g~-~dg~i~vwd~~~~----~~~~~~~~---~----~~~ 101 (915)
++.+..+.. + .......-|+ .+.++|+..+ .++.|.|+|+.+. +..++++. + -..
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 345555543 2 2345555665 2456777766 6789999998743 33444442 1 122
Q ss_pred EEEEEEcCCCCEEEEEEc------CCeEEEEECCCCceEEEEeec---CCcceEEEEEecCCCCEEEEEEC---------
Q 002502 102 IRCVAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASL--------- 163 (915)
Q Consensus 102 i~~l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~--------- 163 (915)
....-.-|+|+.++++-. -|.+.+.|-++. .+...... ....-..+-|.| ..+.++++..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf-~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF-EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT-
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc-cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccC
Confidence 344555678888887632 366888888776 33333332 233456777888 7788887653
Q ss_pred -----------CCcEEEEECCCCCCceEEecCCC--CeeEEEEEeCCCcCEEEEEE-CCCeEEEEEC-CCCc----EEEE
Q 002502 164 -----------DRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGS-DDHTAKVWDY-QTKS----CVQT 224 (915)
Q Consensus 164 -----------dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~ 224 (915)
..++.+||+.+.+.++++.-... -+..+.|.++.+..+=++|+ -..+|..|-- ..++ .+..
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ 289 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID 289 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE
Confidence 35799999999999888875433 35578888877655544443 3444544432 3332 1222
Q ss_pred ecCC-----------------ccCeEEEEEeCCCCEEEEEE-cCCeEEEEeCCCc
Q 002502 225 LEGH-----------------THNVSAVCFHPELPIIITGS-EDGTVRIWHATTY 261 (915)
Q Consensus 225 ~~~~-----------------~~~v~~v~~~~~~~~l~~~~-~dg~v~iwd~~~~ 261 (915)
+... ..-|+.|.+|.|.++|..+. ..|.|+.||+...
T Consensus 290 ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 290 IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2110 23478999999999887665 6899999998764
No 380
>PRK10115 protease 2; Provisional
Probab=97.16 E-value=0.89 Score=53.69 Aligned_cols=237 Identities=10% Similarity=0.001 Sum_probs=125.0
Q ss_pred CEEEEEEcCCCCEEEEEEc-C----CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEE
Q 002502 17 RVKSVDLHPSEPWILASLY-S----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYN 85 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd 85 (915)
.+..+.|||||++|+.+.. + ..|++.|+.+|..+...-... -..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777899999999997754 2 348899998886432211111 1569999999877766442 3788889
Q ss_pred CCCC--ceeEEEecCCCCEE-EEEEcCCCCEEEEEEc---CCeEEEEECC--CCceEEEEeecCCcceEEEEEecCCCCE
Q 002502 86 YNTM--DKVKVFEAHTDYIR-CVAVHPTLPYVLSSSD---DMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (915)
Q Consensus 86 ~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (915)
+.++ +-...+........ ....+.++++++..+. ++.+.+++.. .+ .....+.........+. +. ++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HY--QHR 281 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eC--CCE
Confidence 8887 44445543333333 3334447887665443 3578888853 23 22222222222222222 32 334
Q ss_pred EEEEECC----CcEEEEECCCCCCceEEecC-C-CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEec-CCc
Q 002502 158 FASASLD----RTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLE-GHT 229 (915)
Q Consensus 158 l~~~~~d----g~i~i~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~ 229 (915)
|...+.. ..|...++.+......+..+ . ..+..+.++ ++. ++++...+|.-+++-+.. +..+..+. ...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~-l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDW-LVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCE-EEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 4443332 23444455422222333334 2 357777776 332 566666677655554332 23334333 222
Q ss_pred cCeEEEEEe--CCCC-EEEEEE---cCCeEEEEeCCCce
Q 002502 230 HNVSAVCFH--PELP-IIITGS---EDGTVRIWHATTYR 262 (915)
Q Consensus 230 ~~v~~v~~~--~~~~-~l~~~~---~dg~v~iwd~~~~~ 262 (915)
..+..+.++ +++. ++++.+ .-+.+..+|..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333344 3333 343333 23568888877654
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.038 Score=58.76 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=99.9
Q ss_pred CCCEEE-EEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCE-----EEEEECCCeEEEEECCCC-c-EEEEe
Q 002502 154 DTNTFA-SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-----LITGSDDHTAKVWDYQTK-S-CVQTL 225 (915)
Q Consensus 154 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~-~-~~~~~ 225 (915)
+.++++ .+.....++-.|+..|+.+.....+.. |+-+.+.|+.+... -++|-++..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 455556788889999998888876655 78888888764322 355777889999998742 2 22222
Q ss_pred cCC----ccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceee-eeeccCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 226 EGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 226 ~~~----~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
++| .....|.+-..+| +|++||.+|.||+||- .++.- ..+.+-..+|..+..+.+|++|++.+..-.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 222 2346677777676 8999999999999996 55543 445555678999999999999998887766665
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0094 Score=68.56 Aligned_cols=110 Identities=13% Similarity=0.177 Sum_probs=77.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (915)
++..++-.-.+.+++.|++.|.+-..|+.+. .+...-..-.++|++++|+.+|.+++.|-.+|.|.+||...+ ...+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceee
Confidence 3444444446678999999999999887652 111222234578999999999999999999999999999987 56666
Q ss_pred eecCCcceEEEE---EecCCCCEEEEEECCCcEEEEEC
Q 002502 138 FEGHSHYVMQVT---FNPKDTNTFASASLDRTIKIWNL 172 (915)
Q Consensus 138 ~~~~~~~i~~~~---~~p~~~~~l~~~~~dg~i~i~d~ 172 (915)
+..|..+.+.+- +.. ++..+.++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 665655544443 333 4556777777775 5654
No 383
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.12 E-value=0.055 Score=45.60 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=69.7
Q ss_pred EEEEEEcC---CC-CEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 18 VKSVDLHP---SE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 18 v~~~~~sp---~~-~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
|++|++.. || +.|++|+.|..|+||+- .+.+.++.. ...|+++.-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 66777665 33 47999999999999983 356666663 456777776666 56999999999999985 34555
Q ss_pred EEecCCCCEEEEEEcCC---C-CEEEEEEcCCeEE
Q 002502 94 VFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIK 124 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~---~-~~l~~~~~dg~i~ 124 (915)
..+... .+.++.+..- | +-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555433 3666665442 2 2688888888764
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.2 Score=49.32 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=132.9
Q ss_pred EEEEEecCCCCEEEEEECCCc-EEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEEEECC-----CeEEEEECC
Q 002502 146 MQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDD-----HTAKVWDYQ 217 (915)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 217 (915)
..++++|.....++.+-.-|+ ..++|.++.....++...+.. .-.=.|+|+|. +|...-.| |.|-+||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc
Confidence 457788866777777777776 468898887766665433322 12346888887 56654333 789999987
Q ss_pred CC-cEEEEecCCccCeEEEEEeCCCCEEEEEEc------------------CCeEEEEeCCCceeeeeec----cCCccE
Q 002502 218 TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSE------------------DGTVRIWHATTYRLENTLN----YGLERV 274 (915)
Q Consensus 218 ~~-~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~----~~~~~v 274 (915)
.+ +.+-.+..|.-....+.|.+||+.++.+.. .-++.+.|..+|.++.... .+..++
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 53 456677778777888999999998887532 1123344444555443222 123345
Q ss_pred EEEEEecCCCeEEEEecCCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeeeecCCccc
Q 002502 275 WAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL 354 (915)
Q Consensus 275 ~~i~~s~~~~~l~~g~~dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 354 (915)
..++..+||..++.+-..|- -...++++.+...|+-+ ..+. ++-........
T Consensus 229 RHld~g~dgtvwfgcQy~G~----~~d~ppLvg~~~~g~~l-------~~~~-----------------~pee~~~~~an 280 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGP----RNDLPPLVGHFRKGEPL-------EFLD-----------------LPEEQTAAFAN 280 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCC----CccCCcceeeccCCCcC-------cccC-----------------CCHHHHHHHHh
Confidence 66666666654443322221 01122222222211111 1111 10011112234
Q ss_pred CCceEEECCCCCEEEEEc--CCcEEEEEeecccccCccceeEEEE-e-cCCcEEEEecCCeEEEec
Q 002502 355 YPQSLKHNPNGRFVVVCG--DGEYIIYTALAWRNRSFGSALEFVW-S-SDGEYAVRESSSKIKIFS 416 (915)
Q Consensus 355 ~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~~~~~~~~~~~~~~-s-~dg~~l~~~~~~~v~v~~ 416 (915)
++-+++.+.+..+++..+ .+.+.+|+..+........+.+.+- . ..+-++++..+|.+.+++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence 677888888877887776 5678888877665443332222211 1 123455555567776653
No 385
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.10 E-value=0.063 Score=45.22 Aligned_cols=102 Identities=20% Similarity=0.378 Sum_probs=69.7
Q ss_pred eeEEEEEe---CCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceee
Q 002502 188 VNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (915)
Q Consensus 188 v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (915)
|++++++. +|. +-|++|+.|..|++|+- ...+..+. -...|++++-... ..++.+..+|+|-+|+- ...+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 55666554 232 37999999999999983 46677776 3456778777766 56888899999999984 2334
Q ss_pred eeeccCCccEEEEEEecCC----CeEEEEecCCeEEE
Q 002502 265 NTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMV 297 (915)
Q Consensus 265 ~~~~~~~~~v~~i~~s~~~----~~l~~g~~dg~v~i 297 (915)
+..+.. ..+.++.+..-. .-|++|-.+|.+-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 345666554432 36888988888754
No 386
>PHA02713 hypothetical protein; Provisional
Probab=97.09 E-value=0.042 Score=63.01 Aligned_cols=216 Identities=8% Similarity=0.027 Sum_probs=103.2
Q ss_pred eEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCceeEEEecCCCCEEEEEEcCCC
Q 002502 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (915)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 111 (915)
.+..||..+++....-.............-++...++|+.+ ..+..||..+......-.-....-......-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 57788887764332111111111111222366777777753 357788887765422111111111111122256
Q ss_pred CEEEEEEcCC-----eEEEEECCCCceEEEE--eecCCcceEEEEEecCCCCEEEEEECCC-------------------
Q 002502 112 PYVLSSSDDM-----LIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDR------------------- 165 (915)
Q Consensus 112 ~~l~~~~~dg-----~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg------------------- 165 (915)
+..+.|+.++ ++..||..++ ..... +.........+.. ++.+.++|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccc
Confidence 6667777653 4788998876 22221 1111111112222 577777777653
Q ss_pred ----cEEEEECCCCCCceEEecCCCCe-eEEEEEeCCCcCEEEEEECC------CeEEEEECCC-CcE--EEEecCCccC
Q 002502 166 ----TIKIWNLGSPDPNFTLDAHQKGV-NCVDYFTGGDKPYLITGSDD------HTAKVWDYQT-KSC--VQTLEGHTHN 231 (915)
Q Consensus 166 ----~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~~ 231 (915)
++..||..+.+-...-.-..... .+++ .-++. +.+.|+.+ ..+..||..+ .+- +..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~--IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD--IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE--EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 46677776643211111001111 1222 22333 55666543 2467899886 332 2333222222
Q ss_pred eEEEEEeCCCCEEEEEEcCC--eEEEEeCCCce
Q 002502 232 VSAVCFHPELPIIITGSEDG--TVRIWHATTYR 262 (915)
Q Consensus 232 v~~v~~~~~~~~l~~~~~dg--~v~iwd~~~~~ 262 (915)
...+.+ ++++.++||.+| .+-.||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222222 667888999888 66677766554
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.047 Score=62.41 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=104.2
Q ss_pred CCEEEEEEeCCCCEEEEEe------CCC--eEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC---------
Q 002502 58 LPVRSAKFVARKQWVVAGA------DDM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--------- 120 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~------~dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d--------- 120 (915)
..+.+.+.+|+|+.++... .|+ .|.+++.. +.......+ ...+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999988765 233 55555643 223222232 237888999998877776532
Q ss_pred ---CeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEE---EECCCCCCc----eEEec-CCCCee
Q 002502 121 ---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI---WNLGSPDPN----FTLDA-HQKGVN 189 (915)
Q Consensus 121 ---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i---~d~~~~~~~----~~~~~-~~~~v~ 189 (915)
+.+.+.+++.++. .. .....|..+.|+| |+..++... +|.|.+ -....+... ..+.. ....+.
T Consensus 427 ~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAV-AS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchh-hh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334443311 11 2345699999999 888877766 477776 443344311 11222 223357
Q ss_pred EEEEEeCCCcCEEEEEECCCeEEEEECCC-CcEEEEecC--CccCeEEEEEeCCCCEEEEEEcCCeEEE
Q 002502 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRI 255 (915)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~dg~v~i 255 (915)
.+.|..++. |+++..++.-.+|.+.- |.....+.. ...++..++-+++ .++....+|.+.+
T Consensus 501 ~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 899998876 55655554444454322 332222222 2456777777663 3555555664443
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.08 E-value=0.00067 Score=64.01 Aligned_cols=141 Identities=10% Similarity=0.076 Sum_probs=78.0
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceE-EecCCCCeeEEE
Q 002502 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVD 192 (915)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~ 192 (915)
+...+.||.|.-++++......+.-.-+ .+..-.+..+..+++|+.+|.|.+|.......... .......+.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~----~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFI----DEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhh----hcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445667777777766432211111112 12211222467899999999999998763222111 111222232222
Q ss_pred EEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCc-cCeEEEEEeCCCCEEEEE--EcCCeEEEEeCC
Q 002502 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITG--SEDGTVRIWHAT 259 (915)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~l~~~--~~dg~v~iwd~~ 259 (915)
-. .....+.++++.+|.|+.|++..++.+-....|. .++.....+..++++... |.|..++.|++.
T Consensus 109 p~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11 1122378899999999999998888777666666 444444444444455544 555555555544
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.07 E-value=0.18 Score=48.09 Aligned_cols=214 Identities=12% Similarity=0.147 Sum_probs=113.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCC--CEEEEE-eCCCeEEEEECC--CCceeEEEe-----
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAG-ADDMFIRVYNYN--TMDKVKVFE----- 96 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g-~~dg~i~vwd~~--~~~~~~~~~----- 96 (915)
+.++.+--..|.|+-||+.+.+..+ .+....++.++.+--.+ +-++++ +..-.|.-||.. .-....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~r-a~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYR-AKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEE-EEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3455555557888889987654332 22222223344442222 223333 333344456622 222222211
Q ss_pred cCCCCEEEEEEcCCCCEEEEEEc---------CCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 97 AHTDYIRCVAVHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 97 ~~~~~i~~l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
....+.+.-..+|+|++..-.-. .|.++.|-.... +...+ ..-.--..++|+.+...+.++-+.+-+|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceeee-hhccCCccccccccCcEEEEEccCceEE
Confidence 11345566778899988432211 244444443322 11111 1112235678886333344555667778
Q ss_pred EEEE--CCCCC-----CceEEec----CCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEE
Q 002502 168 KIWN--LGSPD-----PNFTLDA----HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (915)
Q Consensus 168 ~i~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 236 (915)
.-|| ..++. .+..+.. .......+++.. .+.+.++....++|...|..+|+.+.++.-....|+++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7787 44432 2222221 111123344433 444788888899999999999999999998888999999
Q ss_pred EeCC-CCEEEE
Q 002502 237 FHPE-LPIIIT 246 (915)
Q Consensus 237 ~~~~-~~~l~~ 246 (915)
|-.. -..+++
T Consensus 261 FgGkn~d~~yv 271 (310)
T KOG4499|consen 261 FGGKNLDILYV 271 (310)
T ss_pred ecCCCccEEEE
Confidence 9643 234443
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.06 E-value=0.27 Score=48.99 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCEEEEEEcCC--eEEEEECCCCceeEEEEecCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEE
Q 002502 18 VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 94 (915)
.-.+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---.++.. +++.....-.++...+||.++.+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 34577767777666666544 699999999988776654322 11233333 333444556789999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeec--CC---cceEEEEEecCCCCEEEEEECCCcEEE
Q 002502 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG--HS---HYVMQVTFNPKDTNTFASASLDRTIKI 169 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~p~~~~~l~~~~~dg~i~i 169 (915)
+.- .+.=+.++ .+++.|+.+.....|+.+|..+... ...+.. .. ..+.-+.|. ++...|-.=....|..
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence 864 34556777 4566788777778999999887633 332221 11 235556676 4655555555667777
Q ss_pred EECCCCCCceEEe---------------cCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 170 WNLGSPDPNFTLD---------------AHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 170 ~d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.|..+|+....+. ....-.+.|+|.|..+. ++++|-
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTGK 250 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTGK 250 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEET
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEeC
Confidence 8888877655442 01345789999988774 666663
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.13 Score=51.07 Aligned_cols=169 Identities=9% Similarity=0.063 Sum_probs=112.6
Q ss_pred EecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecC-CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCc
Q 002502 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (915)
Q Consensus 54 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (915)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -.....|.+..+|++.++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344456999999999999999988888888887889998887521 2234668888888888887788888888776542
Q ss_pred eEEE---------EeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE---ecC-------CCCeeEEEE
Q 002502 133 MCTQ---------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAH-------QKGVNCVDY 193 (915)
Q Consensus 133 ~~~~---------~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~-------~~~v~~~~~ 193 (915)
.... ...+.+...-.++|.| ....|..+-+-.-+.||........... ..+ -..|.++.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2111 1112255678899999 6667777777777777766533211111 111 123566777
Q ss_pred EeCCCcCEEEEEECCCeEEEEECCCCcEEEEe
Q 002502 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (915)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (915)
.+..+. +++-+..++.+.-.|.. |.++..+
T Consensus 241 ~~~~~~-LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNS-LLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCc-EEEEecCCceEEEEecC-CCeeeeE
Confidence 765443 67777778888888865 5554443
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.0049 Score=70.74 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcee--EEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002502 26 SEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 26 ~~~~la~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
.+.+++.|+..|.|...|.... +. ..-....++|++++|+.+|..++.|-.+|.|.+||..+++..+.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3567889999999999986542 22 12222467999999999999999999999999999999999888876555443
Q ss_pred E---EEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 104 C---VAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 104 ~---l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+ +.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3 444555667788777775 5543
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=96.97 E-value=0.71 Score=49.23 Aligned_cols=226 Identities=11% Similarity=0.049 Sum_probs=109.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCceeEEEe----cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~----~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
..++.++.|..+..-+++|. +|.| |.. +.|+.-.... .....+.++.|.++ ..+++ +..|.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666677764 4543 322 2222211111 11234677888754 33444 445544332 2233
Q ss_pred ceEEEEeec--CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcCEEEEEECC
Q 002502 132 WMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDD 208 (915)
Q Consensus 132 ~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (915)
......... .......+.... .+.. ..++..|.|..-+ +.++.-..+ ......+..+.+.+++. ++..+..
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~-~~~~-~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~---~v~~g~~ 192 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALG-PGTA-EMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK---YVAVSSR 192 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEEC-CCcc-eeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe---EEEEeCC
Confidence 222222111 111122222221 2223 3344455553322 233322222 22345678888887654 4455555
Q ss_pred CeEEE-EECCCCcEEEE-ecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc----CCccEEEEEEecC
Q 002502 209 HTAKV-WDYQTKSCVQT-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKS 282 (915)
Q Consensus 209 g~i~i-wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~s~~ 282 (915)
|.+.. ++ ..++.-.. .......++++.+.++++.++++ ..|.+++=+...|..-..... ....+.++.+.|+
T Consensus 193 G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 193 GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 65543 22 22232222 22345678999999999877765 467665433344443222221 1235778889888
Q ss_pred CCeEEEEecCCeEEE
Q 002502 283 SRRIVIGYDEGTIMV 297 (915)
Q Consensus 283 ~~~l~~g~~dg~v~i 297 (915)
+..++ ++.+|.+..
T Consensus 271 ~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 271 GEIWA-GGGNGTLLV 284 (334)
T ss_pred CCEEE-EcCCCeEEE
Confidence 77555 445665554
No 394
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.91 E-value=0.022 Score=65.90 Aligned_cols=136 Identities=12% Similarity=0.168 Sum_probs=93.3
Q ss_pred EcCCeEEEEECCCCceEEEEeecCCcc-eEEEEEec----CCCCEEEEEECCCcEEEEECCCCCC-ceEEe----cCCCC
Q 002502 118 SDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDP-NFTLD----AHQKG 187 (915)
Q Consensus 118 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p----~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~----~~~~~ 187 (915)
.....|+-.|++.| +++..+..|... |..++-.. -++...++|-.+..+..||.+-... +..-. .....
T Consensus 501 ~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 34578999999999 667777766543 55543321 1234566777888999999986431 11111 23345
Q ss_pred eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
..|++-+.+| +|++|+.+|.||+||--..+....+.+...+|..|..+.||++|++.+ +..|.+++.
T Consensus 580 Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 6677665555 699999999999999433333445667788999999999999988776 457878774
No 395
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.25 Score=51.38 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=128.4
Q ss_pred EEEeCCCCEEEEE-eCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEee--
Q 002502 63 AKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-- 139 (915)
Q Consensus 63 ~~~s~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 139 (915)
..|.++...|+-. -..+.|.-|+..+++. ..+. +.+.+.++..-..+..|+++.. .+.+++.+++........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3577777755544 4577899999876543 3333 2334455554444545555543 356777665523122211
Q ss_pred -c-CCcceEEEEEecCCCCEEEEEEC-----------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 140 -G-HSHYVMQVTFNPKDTNTFASASL-----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 140 -~-~~~~i~~~~~~p~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
+ .......+...| ++.+.+.... -|.|+.+|. .+.....+..+-..-+.++|+|+++. ++++=+
T Consensus 106 ~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE-EEEEeC
Confidence 1 123455677777 5554443222 133444443 44445555554566689999999973 444444
Q ss_pred CCCeEEEEECCC--C----cE-EEEecCCccCeEEEEEeCCCCEEEEEEcCC-eEEEEeCCCceeeeeeccCCccEEEEE
Q 002502 207 DDHTAKVWDYQT--K----SC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 207 ~dg~i~iwd~~~--~----~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
..+.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+.+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 558888887752 1 11 222223345566788888888775554444 89999977 999998888877778888
Q ss_pred Eec-CCCeEEEEe
Q 002502 279 YMK-SSRRIVIGY 290 (915)
Q Consensus 279 ~s~-~~~~l~~g~ 290 (915)
|-- +.+.|.+.+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 753 344444433
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.88 E-value=0.92 Score=49.19 Aligned_cols=270 Identities=14% Similarity=0.175 Sum_probs=147.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCcee---EEEE-ecCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCC--Cc-----
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMA---KSFE-VTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNT--MD----- 90 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~---~~~~-~~~~~v~~~~~s~-----~~~~l~~g~~dg~i~vwd~~~--~~----- 90 (915)
...+++|+.+|.++||+...+... ..++ .-..||..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 358999999999999997554311 1111 2456777776542 2334554 4556788887721 11
Q ss_pred --eeEEEecCC--CCEEEEEEcCC-----CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEE
Q 002502 91 --KVKVFEAHT--DYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (915)
Q Consensus 91 --~~~~~~~~~--~~i~~l~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (915)
.+..+..|. .....+++-|- ..+|++=+-||.+.+++-+.. .....+.. .--...+.|.| ..+.|+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~-~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCP-RTDSFVTA 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEee-cCCEEEEe
Confidence 122222222 22334444332 357888899999999997764 33333333 22334577888 77889999
Q ss_pred ECCCcEEEEECCC--------------------CC---CceEEecCCCCeeEEEEEeC-CCcCEEEEEECCCeEEEEECC
Q 002502 162 SLDRTIKIWNLGS--------------------PD---PNFTLDAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 162 ~~dg~i~i~d~~~--------------------~~---~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 217 (915)
+.+..+..|.... ++ +.+++.- ...+..+..... +....+++-+ ...+.+.+-
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 9888888886421 00 1112221 122333332221 1222344433 345666664
Q ss_pred CCcEEEEecCCccCeEEEE-EeC----CC---CEEEEEEcCCeEEEEeCCCceeeeeeccCCccE--EEEEEecCCCeEE
Q 002502 218 TKSCVQTLEGHTHNVSAVC-FHP----EL---PIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSRRIV 287 (915)
Q Consensus 218 ~~~~~~~~~~~~~~v~~v~-~~~----~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~s~~~~~l~ 287 (915)
+|......+ ......+++ +.. .+ ..+++++.++++.||. ..++.+.-+....+| .-..+..-...|+
T Consensus 270 ~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV 346 (418)
T PF14727_consen 270 NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIV 346 (418)
T ss_pred CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEE
Confidence 465443333 222222222 211 22 2588889999999996 345555555443333 2222333456788
Q ss_pred EEecCCeEEE-ecCCCccee
Q 002502 288 IGYDEGTIMV-KIGREEPVA 306 (915)
Q Consensus 288 ~g~~dg~v~i-~~~~~~~~~ 306 (915)
+-+++|.+.+ +++.+++..
T Consensus 347 ~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 347 SLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred EEcCCCcEEEEEeCCCCccc
Confidence 8888999888 566666544
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.0032 Score=41.84 Aligned_cols=39 Identities=41% Similarity=0.609 Sum_probs=34.1
Q ss_pred CceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE
Q 002502 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd 127 (915)
++....+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 398
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.85 E-value=0.0034 Score=41.71 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=33.8
Q ss_pred ceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (915)
+....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 399
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.84 E-value=0.49 Score=51.67 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=92.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEE--cCCeEEEEECCCCceeEEEEecCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEC
Q 002502 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~g~~dg~i~vwd~ 86 (915)
.--.+|..++|..-.+.+++.. .+|.+++=| ...+..|+ .|..+.|.|- ...+.+......|.||-+
T Consensus 17 qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 17 QAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 3345788899975545555554 255554433 22333333 5889999985 345666678889999987
Q ss_pred C-----CCceeEEEecC---CC--CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCC
Q 002502 87 N-----TMDKVKVFEAH---TD--YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (915)
Q Consensus 87 ~-----~~~~~~~~~~~---~~--~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (915)
. +.+.+..-..+ .- -...+.|+|....|++-.....=.++++.......+.-....+.|.|.+|.+ ||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCC
Confidence 5 22222221111 11 1246789999988877666554456666544333333335667899999999 777
Q ss_pred EEEEEEC-CCcEEEEECC
Q 002502 157 TFASASL-DRTIKIWNLG 173 (915)
Q Consensus 157 ~l~~~~~-dg~i~i~d~~ 173 (915)
.|+++-. .=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 7766543 3345788853
No 400
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.00033 Score=72.95 Aligned_cols=127 Identities=15% Similarity=0.015 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002502 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
.+.|+..+..|....+...| +++|+..||..++--+..+-..++.+..-+.++-.+-.||+|.+.+.
T Consensus 3 ~~~~~~~~~~a~~d~~~~~a-------------iriyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l 69 (615)
T KOG2247|consen 3 LKVIPCTLTKAQEDFKCVSA-------------IRIYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL 69 (615)
T ss_pred ccchhhHHHhhhhhccchHH-------------HHHHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceec
Confidence 35799999999999999999 77888888877777777777777877766777778899999999999
Q ss_pred HCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCc
Q 002502 748 ESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAE 823 (915)
Q Consensus 748 ~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 823 (915)
+.+++-+|+.|+|+. . |.+.+. +|+.-. |..-|-+-.+|.+++|.-+.+..+..+|++.-
T Consensus 70 e~n~tg~aldm~wDk-e---------gdvlav-----lAek~~-piylwd~n~eytqqLE~gg~~s~sll~wsKg~ 129 (615)
T KOG2247|consen 70 ELNPTGKALDMAWDK-E---------GDVLAV-----LAEKTG-PIYLWDVNSEYTQQLESGGTSSKSLLAWSKGT 129 (615)
T ss_pred ccCCchhHhhhhhcc-c---------cchhhh-----hhhcCC-CeeechhhhhhHHHHhccCcchHHHHhhccCC
Confidence 999999999999997 3 555554 454443 77777777888888888877777766665543
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.75 E-value=1.2 Score=48.74 Aligned_cols=150 Identities=11% Similarity=0.198 Sum_probs=87.5
Q ss_pred CCEEEEEEeCCCCEEE-EEe--CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCC----CCEEEEEEcCCeEEEEECCC
Q 002502 58 LPVRSAKFVARKQWVV-AGA--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT----LPYVLSSSDDMLIKLWDWEK 130 (915)
Q Consensus 58 ~~v~~~~~s~~~~~l~-~g~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~l~~~~~dg~i~iwd~~~ 130 (915)
.||..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|.|- .+.|+.......|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899997 555544 332 234443332 1233333 35889999985 44566667778999998762
Q ss_pred C------ceEEEEeec---CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEE-ecCCCCeeEEEEEeCCCcC
Q 002502 131 G------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 131 ~------~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 200 (915)
. +.+.++..- ..---..+.|+| ....|++-.....-.+++.......... -...+-|.|.+|.++|.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R- 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR- 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE-
Confidence 1 122222111 111124578999 6667776665544445555443322222 245678999999999987
Q ss_pred EEEEEECCCeEEEEECC
Q 002502 201 YLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~ 217 (915)
++++.++.=.-++||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 44444555567889854
No 402
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.74 E-value=0.12 Score=59.28 Aligned_cols=230 Identities=13% Similarity=0.067 Sum_probs=116.7
Q ss_pred cCCCCEEEEEEcC------CeEEEEECCCCceeEEEEec-CCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCc
Q 002502 24 HPSEPWILASLYS------GTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMD 90 (915)
Q Consensus 24 sp~~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd~~~~~ 90 (915)
+..+..+++|+.. ..+..||..++......... ...-.+++.. ++...++|+.+ .++..||..+.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345667777776 35888998877443322222 2223334433 55778888888 367788887776
Q ss_pred eeEEEecCCCCEEEEEEcCCCCEEEEEEcCC-----eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCC
Q 002502 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 91 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
....-.-.......-.-.-+|...++|+.|| ++-.||..+. .....- .............-++.+.++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~-~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN-KWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC-cccccC-CCCcceeeeEEEEECCEEEEEcCcCC
Confidence 5442211111111111122577778888885 4777887765 222111 11111222222222677888888654
Q ss_pred ------cEEEEECCCCCCce--EEecCCCCeeEEEEEeCCCcCEEEEEECCC-----eEEEEECCCCcEEEEecCCccCe
Q 002502 166 ------TIKIWNLGSPDPNF--TLDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHNV 232 (915)
Q Consensus 166 ------~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v 232 (915)
++..||..+++-.. .+....... .++.. ++. +.++|+.++ +|..||..+.+-... .....+.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~--iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~r 513 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK--IYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPR 513 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE--EEEECCccCCCccceEEEEcCCCCceeEc-ccCcccc
Confidence 46778876654221 111111111 22222 233 677777665 377788876554322 1111122
Q ss_pred EEEE-EeCCCCEEEEEEcCCe-----EEEEeCCCc
Q 002502 233 SAVC-FHPELPIIITGSEDGT-----VRIWHATTY 261 (915)
Q Consensus 233 ~~v~-~~~~~~~l~~~~~dg~-----v~iwd~~~~ 261 (915)
..+. ..-++...++|+.||. |..||..+.
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2221 1224567778887763 555554443
No 403
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.74 E-value=0.15 Score=55.09 Aligned_cols=272 Identities=8% Similarity=-0.024 Sum_probs=144.6
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
..+|..+.+...|. +.+|..+| +..||..+++.++.-.... .+|..+.-+-.| .+.+|+.+| |.+.+....+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 35677888888775 67777777 6678877877665444332 566666655555 477888877 6666655422211
Q ss_pred EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCC--cceEEEEEecCCCCEEEEEECCCcEEEE
Q 002502 94 VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (915)
Q Consensus 94 ~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg~i~i~ 170 (915)
... -....|..+.-..+| .+-.|+.+|..+. ..+.........+.|. +.|.++..+ ....+.+++.+|.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D--~dGsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLD--TDGSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeec--cCCCEeeeccCceEEEe
Confidence 111 123445555444444 5777777775433 3332212222222222 223343333 34457777777765554
Q ss_pred ECCCCCCceEEecCCCC-eeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC-CccCeEEEEEeCCCCEEEEEE
Q 002502 171 NLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIIITGS 248 (915)
Q Consensus 171 d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~ 248 (915)
+- .......+....+. +...+..|.....-+-...+-|.+.+-+-.+|..+.+... ....|+.+++..+| .+-.|+
T Consensus 316 ~a-~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TA-DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cc-hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 32 11221222222121 1122222211111233333334455555556665554322 23567778888755 466666
Q ss_pred cCCeEEEEeCCC-ceeeeeec-cCCccEEEEEEecCCCeEEEEecCCeEEE
Q 002502 249 EDGTVRIWHATT-YRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
...-+..|+..+ +-...... ...+.|..+.-.|+++ |.+|+.+|.+..
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 664566777666 33332222 2346788888888888 888999998876
No 404
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.72 E-value=0.55 Score=55.40 Aligned_cols=230 Identities=10% Similarity=0.056 Sum_probs=124.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeEEEEecCC--------CEEEEEEeC----------------CCCEEEEEeCCCeEE
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--------PVRSAKFVA----------------RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~----------------~~~~l~~g~~dg~i~ 82 (915)
+..|.+++.++.|.-.|..+|+.+..+..... .++.+++.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55677777889999999999998888764321 122333321 244788999999999
Q ss_pred EEECCCCceeEEEecCCCCEE-------------EEEEcC--CCCEEEEEEc----------CCeEEEEECCCCceEEEE
Q 002502 83 VYNYNTMDKVKVFEAHTDYIR-------------CVAVHP--TLPYVLSSSD----------DMLIKLWDWEKGWMCTQI 137 (915)
Q Consensus 83 vwd~~~~~~~~~~~~~~~~i~-------------~l~~s~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 137 (915)
-.|.+||+....+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 11110 111112 1335666643 688999999999443333
Q ss_pred eecCCcceEEEEEecCCCCEEEEEECCC-cEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEEC
Q 002502 138 FEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (915)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (915)
..+.... ... .+ .+.....++.+. ...-+|...+....- .+.. +..+..... ........+.|.-.|.
T Consensus 353 ~~g~p~~-~~~--~~-~g~~~~~gg~n~W~~~s~D~~~glvy~p-tGn~----~pd~~g~~r--~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 353 DPGNPDP-TAP--PA-PGETYTRNTPNSWSVASYDEKLGLVYLP-MGNQ----TPDQWGGDR--TPADEKYSSSLVALDA 421 (764)
T ss_pred ecCCCCc-ccC--CC-CCCEeccCCCCccCceEEcCCCCeEEEe-CCCc----cccccCCcc--ccCcccccceEEEEeC
Confidence 2221111 100 01 222222222111 222333322211110 0110 011110000 0001122456777888
Q ss_pred CCCcEEEEecCCccCeE---------EEEEeC-CCC---EEEEEEcCCeEEEEeCCCceeeeeec
Q 002502 217 QTKSCVQTLEGHTHNVS---------AVCFHP-ELP---IIITGSEDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 217 ~~~~~~~~~~~~~~~v~---------~v~~~~-~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (915)
++|+....++...+.+. -+.+.. +|+ .++.++.+|.+.++|..+|+.+....
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88988877765222111 122322 553 78999999999999999999876544
No 405
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.71 E-value=0.0027 Score=66.28 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=64.1
Q ss_pred eeecccCCHHHHHHHHHH-------cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHH
Q 002502 647 ELAIQLGRLEVAQEIATE-------VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAE 711 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~-------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~ 711 (915)
.++...++++++.++... -.++..|..+|..+.+.|+.+.|+++|.++-.. ..++.++...|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 556788999998888765 235679999999999999999999999988422 23444555567776
Q ss_pred HHHHHHHHHHHc----CCch-HHHHHHHHcCCHHHHHHHHHH
Q 002502 712 GISKLASLAKEQ----GKNN-VAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 712 ~~~~l~~~~~~~----~~~~-~a~~~~~~~g~~~~a~~l~~~ 748 (915)
.+..+.+..... .... .-+.+++.+|++++|+.+|.+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 544443333222 2222 223445566666666666654
No 406
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.031 Score=63.93 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=82.5
Q ss_pred ccCCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc---hhHHHHHhcCCHHHHH-------------
Q 002502 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS---GLLLLYSSLGDAEGIS------------- 714 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~---~l~~l~~~~g~~~~~~------------- 714 (915)
..++++.|+++|.+.+.+..|.+||.+-++.+.+..|.+.|.|+.|.. .++.+....|..+.+.
T Consensus 1087 ~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 568899999999999999999999999999999999999999998653 3444445555544432
Q ss_pred --------------------------------HHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002502 715 --------------------------------KLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 715 --------------------------------~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
.+...+..++++..|..+|....+|.+-..-+...|.+.-|..-||+-
T Consensus 1167 ~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1167 YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 223333455555666666666666666666667777777777777765
Q ss_pred C
Q 002502 763 L 763 (915)
Q Consensus 763 ~ 763 (915)
.
T Consensus 1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred c
Confidence 3
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.58 E-value=0.57 Score=50.65 Aligned_cols=85 Identities=9% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCC-eeEEEEEeCCC---------------cCE-EE
Q 002502 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGD---------------KPY-LI 203 (915)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~---------------~~~-l~ 203 (915)
....+.+++.+| ++++.++...-|.|.++|+.++..++.+++-... +.-+.....+. ..+ ++
T Consensus 306 ~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 306 SKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 344578899999 7888888888899999999888766655543321 11111111110 112 23
Q ss_pred EEECCCeEEEEECCCCcEEEEec
Q 002502 204 TGSDDHTAKVWDYQTKSCVQTLE 226 (915)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~ 226 (915)
-.-.-|.|.||++++|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 34457889999999888777665
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.51 E-value=1 Score=47.95 Aligned_cols=211 Identities=15% Similarity=0.218 Sum_probs=94.2
Q ss_pred CCCEEEEEE-CCCcEEEEECCCC----CCceEEec---C----CCCeeEEEEEeCCCcCEEEEEEC------CCeEEEEE
Q 002502 154 DTNTFASAS-LDRTIKIWNLGSP----DPNFTLDA---H----QKGVNCVDYFTGGDKPYLITGSD------DHTAKVWD 215 (915)
Q Consensus 154 ~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd 215 (915)
+.++|+..+ ..+.|+|+|+.+. +..+.+.. + -.....+..-|+|+ +++++-. -|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 456666666 5788999998743 22233321 1 11223334445554 5666432 25688888
Q ss_pred CCCCcEEEEecCCcc---CeEEEEEeCCCCEEEEEEc--------------------CCeEEEEeCCCceeeeeeccCCc
Q 002502 216 YQTKSCVQTLEGHTH---NVSAVCFHPELPIIITGSE--------------------DGTVRIWHATTYRLENTLNYGLE 272 (915)
Q Consensus 216 ~~~~~~~~~~~~~~~---~v~~v~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~ 272 (915)
-.+.+.......... --..+.|.|..+.+++... ..++.+||+.+.+.++++.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 887777666654322 2456788898888887542 35799999999999999987643
Q ss_pred c--EEEEEEec--CCCeEEEEec-CCeEEEecCCCcceeEEcCCCcEEEEeecceEEEEeeecccceeccCCceeeeeee
Q 002502 273 R--VWAIGYMK--SSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (915)
Q Consensus 273 ~--v~~i~~s~--~~~~l~~g~~-dg~v~i~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (915)
. ...+.|.. +...-.+|+. .+.|..|-. +.+|. |....-+.+-.. -.++-.++..++
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k--------~~~g~--W~a~kVi~ip~~--------~v~~~~lp~ml~ 305 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK--------DDDGE--WAAEKVIDIPAK--------KVEGWILPEMLK 305 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---------ETTE--EEEEEEEEE--E--------E--SS---GGGG
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEE--------cCCCC--eeeeEEEECCCc--------ccCccccccccc
Confidence 3 44555544 4444444443 222322211 01222 222111111110 011121221222
Q ss_pred ecCCcccCCceEEECCCCCEEEEEc--CCcEEEEEeecc
Q 002502 348 ELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAW 384 (915)
Q Consensus 348 ~~~~~~~~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~ 384 (915)
.++....-++.|.+|.|.++|-+++ .|.++.|++...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2333345678999999999999887 999999998764
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=0.0032 Score=59.54 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCC
Q 002502 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 185 (915)
+..+++|+.+|.|++|.+.........+......|.++.-+-.++++.++++.||.|+.|++.-.+..-....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 456899999999999998732122222222233344443333356689999999999999987666554444444
No 410
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.48 E-value=1.7 Score=47.10 Aligned_cols=146 Identities=11% Similarity=0.116 Sum_probs=87.2
Q ss_pred CCEEEEEEcCCeEEEEECCCCc-eE--EEEeecCCcceEEEEEe---cC-CCCEEEEEECCCcEEEEECCCC--C-----
Q 002502 111 LPYVLSSSDDMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVTFN---PK-DTNTFASASLDRTIKIWNLGSP--D----- 176 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~~~i~~~~~~---p~-~~~~l~~~~~dg~i~i~d~~~~--~----- 176 (915)
...|++||..|.++||+...+. .. ...-..-..+|..+..- +. ....|++ -.-+.+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3589999999999999986542 11 11112234677777653 22 2234444 44677888887321 1
Q ss_pred --CceEEecCC--CCeeEEEEEeCCC---cCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEc
Q 002502 177 --PNFTLDAHQ--KGVNCVDYFTGGD---KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (915)
Q Consensus 177 --~~~~~~~~~--~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 249 (915)
.+..+..|. .....+++-|-|. ..++++-+.||.+.+|+-+.-.....+.. .--...+++.+....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111112222 2233444444332 45899999999999999654333333332 222334788888888999998
Q ss_pred CCeEEEEeC
Q 002502 250 DGTVRIWHA 258 (915)
Q Consensus 250 dg~v~iwd~ 258 (915)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 411
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.47 E-value=0.17 Score=57.92 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=113.9
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCceeEEEec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCce
Q 002502 67 ARKQWVVAGADD------MFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~ 133 (915)
..+..+++|+.+ ..+..||..++.......- +...-.+++.. ++...++|+.| .++..||..++ .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN-Q 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-c
Confidence 345667777766 3678888887755433321 22223444444 35677788877 35778888876 2
Q ss_pred EEEE--eecCCcceEEEEEecCCCCEEEEEECCCc-----EEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEE
Q 002502 134 CTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRT-----IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (915)
Q Consensus 134 ~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (915)
.... +....... .++.. ++.+.++|+.||. +-.||..+.+-...-. ............-+.. +.++|+
T Consensus 361 W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~-iYi~GG 435 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGK-LYIIGG 435 (571)
T ss_pred eeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCE-EEEEcC
Confidence 3332 11111111 22222 6888999999864 7778876654222111 1112222222222222 666666
Q ss_pred CC------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCCe-----EEEEeCCCceeee--eeccCCcc
Q 002502 207 DD------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-----VRIWHATTYRLEN--TLNYGLER 273 (915)
Q Consensus 207 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~--~~~~~~~~ 273 (915)
.+ .++..||..+++....-.-.......-.-.-++.+.+.||.|+. |..||..+.+-.. ........
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 44 35778888776533221111111111122235677888887763 6778876554322 22222222
Q ss_pred EEEEEEecCCCeEEEEecCCeEEE
Q 002502 274 VWAIGYMKSSRRIVIGYDEGTIMV 297 (915)
Q Consensus 274 v~~i~~s~~~~~l~~g~~dg~v~i 297 (915)
+.. ..-++...++|+.+|.-.+
T Consensus 516 ~g~--~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 516 VGV--VVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccE--EEECCEEEEEecccCcccc
Confidence 222 2235667777777766554
No 412
>PRK10115 protease 2; Provisional
Probab=96.43 E-value=3 Score=49.35 Aligned_cols=195 Identities=6% Similarity=-0.003 Sum_probs=101.2
Q ss_pred CEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcC------CeEEEEE
Q 002502 59 PVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWD 127 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd 127 (915)
.+..+.|+|+|++|+.+.+ ...|++.|+.+++.+...-... -..++|+++++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 3677899999999987744 2368899998886432221111 1469999999877665442 3677888
Q ss_pred CCCCc-eEEEEeecCCcceEEEEEecCCCCEEEEEEC---CCcEEEEECC--CCCCceEEecCCCCeeEEEEEeCCCcCE
Q 002502 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (915)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (915)
+.++. .-..++........-..+.+.++..++..+. ++.+.+++.. ++.....+ .+...+.. .+...++.-+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEY-SLDHYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEE-EEEeCCCEEE
Confidence 88762 2223343322323322333436666555443 3468888843 33322222 22322221 1222333322
Q ss_pred EEEEEC--CCeEEEEECCC-CcEEEEecCC-ccCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 202 LITGSD--DHTAKVWDYQT-KSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 202 l~~~~~--dg~i~iwd~~~-~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
+.+... ...|...++.. ++....+... ...|..+.++.+ .++++...+|.-+++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEE
Confidence 222211 22344445442 2222223321 236788888733 46666666776555443
No 413
>PHA02713 hypothetical protein; Provisional
Probab=96.42 E-value=0.32 Score=55.95 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=94.7
Q ss_pred eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC------CeEEEEECCCCceEEEE--eecCCcceEEEEE
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTF 150 (915)
Q Consensus 80 ~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~ 150 (915)
.+..||..+.+....-.-..... .+++. -++...++|+.+ ..+..||..++ ..... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEEE
Confidence 56778887765432211111111 12222 245566667643 34778898876 22221 11111111 2222
Q ss_pred ecCCCCEEEEEECCC-----cEEEEECCCCCCceEEecCCCCee--EEEEEeCCCcCEEEEEECC---------------
Q 002502 151 NPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDD--------------- 208 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~d--------------- 208 (915)
. ++.+.+.|+.++ ++..||..+.+-.. ......+.. +++ .-++. +.+.|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~-~~~g~--IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMC-VLDQY--IYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEE-EECCE--EEEEeCCCccccccccccccccc
Confidence 2 577888888764 37889987653211 111111111 111 12333 56666644
Q ss_pred --------CeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcC------CeEEEEeCCC-ce--eeeeeccCC
Q 002502 209 --------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHATT-YR--LENTLNYGL 271 (915)
Q Consensus 209 --------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d------g~v~iwd~~~-~~--~~~~~~~~~ 271 (915)
..+..||..+.+-...-.-.......-...-++++.+.||.+ ..+..||..+ .+ .+..+....
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 247778877654321111111111111223345666777654 2467888776 33 333333222
Q ss_pred ccEEEEEEecCCCeEEEEecCC
Q 002502 272 ERVWAIGYMKSSRRIVIGYDEG 293 (915)
Q Consensus 272 ~~v~~i~~s~~~~~l~~g~~dg 293 (915)
..... ..-+++..++|+.+|
T Consensus 504 ~~~~~--~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHT--ILHDNTIMMLHCYES 523 (557)
T ss_pred cccee--EEECCEEEEEeeecc
Confidence 22222 223677778888777
No 414
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.36 E-value=0.00067 Score=70.79 Aligned_cols=278 Identities=9% Similarity=0.084 Sum_probs=162.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcee
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~~~~~~ 92 (915)
|-.......|-|.+.-+++++.+..|..|| +.++...... .++....++|..+++.+++. -..+.+.+|++++...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence 445566778899888899999899999999 5555544443 34556778999888776644 4578999999976432
Q ss_pred EEEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc-----
Q 002502 93 KVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT----- 166 (915)
Q Consensus 93 ~~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~----- 166 (915)
..+. +....-.-+.|++..+.++.+...|.+.|++..+.+ .......|..++++++|.+ .++.+.++.|..
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR-~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR-RIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTT 186 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccchh-hhhhhcccccceeEEEecc--cceeeecCcHHHHHHhh
Confidence 2221 112222337899999999999999999999988763 3334445889999999998 344554444432
Q ss_pred -----EEEEECCC---------------------------C--------------CCceEEecCCCCeeEEEEEeCCCcC
Q 002502 167 -----IKIWNLGS---------------------------P--------------DPNFTLDAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 167 -----i~i~d~~~---------------------------~--------------~~~~~~~~~~~~v~~~~~~~~~~~~ 200 (915)
+..+..+. + ..-..+....+.+.|+.|.-+|
T Consensus 187 qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg--- 263 (615)
T KOG2247|consen 187 QEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--- 263 (615)
T ss_pred hccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccc---
Confidence 22222211 0 0011233344556677777666
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEe---cCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCcee--eeeeccCCccEE
Q 002502 201 YLITGSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVW 275 (915)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~ 275 (915)
++..+..-|.|..-+.++++....+ ..+.+.+.+++.|..-+..++.+ |+.+++-|...-.. ...+........
T Consensus 264 ~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lg 342 (615)
T KOG2247|consen 264 YILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLG 342 (615)
T ss_pred cccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3666766677766666655432221 13444555555444322223322 33444443221110 000111112233
Q ss_pred EEEEecCCCeEEEEecCCeEEEecCC
Q 002502 276 AIGYMKSSRRIVIGYDEGTIMVKIGR 301 (915)
Q Consensus 276 ~i~~s~~~~~l~~g~~dg~v~i~~~~ 301 (915)
.+.|.-+|++++.++..|...+.+.+
T Consensus 343 e~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 343 EIEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred ceeeeeccceeeehhccchHHHHHHh
Confidence 45666788888888877776665444
No 415
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.33 E-value=0.027 Score=67.28 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=77.2
Q ss_pred eeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002502 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~g~~~~~~~ 715 (915)
.++.+.|++++|.++...+.. ...|..|...+.+.|+++.|.+.|.++. -|..++..|...|+.+..++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 567788999999999987754 5689999999999999999999998774 23466777777888776666
Q ss_pred HHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHCC
Q 002502 716 LASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 716 l~~~~~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
+-+...+.|- ++.-..+|...|++++|.++|.++.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 6555555552 2333455667788888888766543
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.28 E-value=1.1 Score=42.87 Aligned_cols=205 Identities=11% Similarity=0.102 Sum_probs=112.4
Q ss_pred CEEEEEeCCCeEEEEECCCCceeEE-EecCCCCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCCc-eEEEEe-ec---
Q 002502 70 QWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGW-MCTQIF-EG--- 140 (915)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~--- 140 (915)
.++.+--..|.|.-||+.+.+..+. +.+. +..++.+--.+ .+.+.++..-.|.-||..... ....++ .-
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444566777788876443322 2222 13333332222 233333333334445522210 112221 11
Q ss_pred -CCcceEEEEEecCCCCEEEEEEC----------CCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCC
Q 002502 141 -HSHYVMQVTFNPKDTNTFASASL----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (915)
Q Consensus 141 -~~~~i~~~~~~p~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (915)
...+...-..+| ++++ ..|.. .|.++.|-.. ..+..+...-.--+.++|+.+.+. +.++-+.+-
T Consensus 106 ~kknR~NDgkvdP-~Gry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~-fY~iDsln~ 180 (310)
T KOG4499|consen 106 RKKNRLNDGKVDP-DGRY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKK-FYYIDSLNY 180 (310)
T ss_pred HHhcccccCccCC-CCce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcE-EEEEccCce
Confidence 133455566777 6766 33332 2445555432 222222223333467888866543 566667777
Q ss_pred eEEEEE--CCCCc-----EEEEecC---Ccc-CeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCCccEEEEE
Q 002502 210 TAKVWD--YQTKS-----CVQTLEG---HTH-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (915)
Q Consensus 210 ~i~iwd--~~~~~-----~~~~~~~---~~~-~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (915)
.|.-|| ..+|. .+..++. ... ..-.+++..+|.+.++.-..|+|...|..+|+.+.++..+..+++++|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 887787 44443 2333322 111 123456677888888888889999999999999999999999999999
Q ss_pred Eec
Q 002502 279 YMK 281 (915)
Q Consensus 279 ~s~ 281 (915)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 964
No 417
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.27 E-value=0.015 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCce
Q 002502 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM 49 (915)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~ 49 (915)
....|.+++|+|...+||.|..+|.|.||.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 4443
No 418
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.092 Score=56.01 Aligned_cols=144 Identities=12% Similarity=0.141 Sum_probs=99.3
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCE-------EEEEEcCCeEEEEECCCCce-EEEEe
Q 002502 68 RKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY-------VLSSSDDMLIKLWDWEKGWM-CTQIF 138 (915)
Q Consensus 68 ~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~ 138 (915)
+.++|+ ++.....++-.|++.|+.+...+.|.+ |.-+.+.|+.+. -++|-.+..|.-||.+-... .....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 445556788889999999999887776 777888887542 34566788899999884322 22222
Q ss_pred ecC----CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEE
Q 002502 139 EGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (915)
Q Consensus 139 ~~~----~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (915)
.+| .....|.+-. ...++++|+.+|.|++||--.......+++...+|..+..+.+|+ +| .|..+.++.+.
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK--wi-l~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK--WI-LATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc--EE-EEecccEEEEE
Confidence 222 2234454444 567899999999999999744444455678889999999999998 34 44556677777
Q ss_pred ECC
Q 002502 215 DYQ 217 (915)
Q Consensus 215 d~~ 217 (915)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.20 E-value=1.1 Score=45.73 Aligned_cols=145 Identities=10% Similarity=-0.020 Sum_probs=87.9
Q ss_pred CEEEEEEcCCCCEEEEEE---cCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCcee
Q 002502 17 RVKSVDLHPSEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKV 92 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd-~~~~~~~ 92 (915)
.+.+.++|++++.+|... ....+.++. .+....... ....+..-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999887665 233455554 333333322 333678889999987776666666666663 3333322
Q ss_pred -EEEec--CCCCEEEEEEcCCCCEEEEEE---cCCeEEEEECCC---C--ce---EEEEeecCCcceEEEEEecCCCCEE
Q 002502 93 -KVFEA--HTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEK---G--WM---CTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 93 -~~~~~--~~~~i~~l~~s~~~~~l~~~~---~dg~i~iwd~~~---~--~~---~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
..... -...|..+.+||||.+++... .++.|.+--+.. + .. ...........+..+.|.+ +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 12221 112899999999999988665 347777765431 1 01 1112222345789999998 56655
Q ss_pred EEEECCC
Q 002502 159 ASASLDR 165 (915)
Q Consensus 159 ~~~~~dg 165 (915)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 5554433
No 420
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.18 E-value=0.022 Score=66.98 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCChhhhhhccc-----Cccce---e---eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCC
Q 002502 620 NSVARFLESRGMIEEAIEVAT-----DPDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~-----~~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (915)
.....++...|.+++|+.... +|... + .+++.+|++++|....+.. .++..|..+|..+...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 444556667788888776542 34322 1 3456889999999887642 457899999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hHHHHHHHHcCCHHHHHHHHHHC
Q 002502 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQG-KN----NVAFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~l~~~~~~~~-~~----~~a~~~~~~~g~~~~a~~l~~~~ 749 (915)
++.|..+|.++-... .+..++...|+.+......+.+.... +. ..-+.++...|++++|++.|.+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999885432 34455666777665555544443322 11 22345566677888887777653
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.22 Score=58.20 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=94.5
Q ss_pred CEEEEEEcCCCCEEEEE--EcCCeEEEEECCCCceE----EEEee------cCCcceEEEEEecCCCCEEEEEECCCcEE
Q 002502 101 YIRCVAVHPTLPYVLSS--SDDMLIKLWDWEKGWMC----TQIFE------GHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (915)
Q Consensus 101 ~i~~l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~----~~~~~------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (915)
+|..+..++|+...++. +.+-.|..||++.-... ...+. .......++.|+|.-....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 46666777776654443 33447889998753111 11111 12234568889996666778888899999
Q ss_pred EEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCCCEE
Q 002502 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELPII 244 (915)
Q Consensus 169 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l 244 (915)
+..+........--......++++|+|.|. .+++|...|++.-|-.. ++....+.. ....|.+|+|-....++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccc--eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 987754433322223455679999999998 59999999999988754 443333332 14679999998877766
Q ss_pred EEE
Q 002502 245 ITG 247 (915)
Q Consensus 245 ~~~ 247 (915)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 653
No 422
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.53 Score=52.89 Aligned_cols=200 Identities=9% Similarity=0.087 Sum_probs=105.2
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecCCcceEEEEEecCCC
Q 002502 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~~ 155 (915)
.-.|+||++. |+.+..+.-..+.+-.|.|+.+. .|++...+|++.+|++-....... .+......|..+.+.. +|
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~G 139 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NG 139 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cc
Confidence 4468888874 56665554334478899999776 577778999999999876422111 1122233355555443 23
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEEec-CCCCe--eEEEEEeCCCcCEEEEEEC--CC-eEEEEECCCCcEEEEecCCc
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGV--NCVDYFTGGDKPYLITGSD--DH-TAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v--~~~~~~~~~~~~~l~~~~~--dg-~i~iwd~~~~~~~~~~~~~~ 229 (915)
+++-..+|++.+-.-.......++.. ..... .|-...+++....++..-. .+ .+..-+..+. ....+....
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~~ 216 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWPN 216 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCCC
Confidence 44444556665543222212222222 11111 2322233322212211111 00 0111111111 122233234
Q ss_pred cCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeeccCC-ccEEEEEEecCC
Q 002502 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSS 283 (915)
Q Consensus 230 ~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~s~~~ 283 (915)
..+..+..||+.++|+--...|.|.+-+....+....+.... .....++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 668889999999999999999999999988777766665321 222255665443
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=96.04 E-value=2.7 Score=44.90 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=131.1
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE----ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~ 90 (915)
...+.+|.|.....-+++|. +|.|..=. +.|+.-.... ....++.++.|.++ ..+++| ..|.|.. ..+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCC
Confidence 55789999986666666764 55443321 2232222111 12334778888654 334444 4454322 222232
Q ss_pred eeEEEe---cCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCc
Q 002502 91 KVKVFE---AHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 91 ~~~~~~---~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
.-..+. ... .........+ +. +..++..|.|..-+ +.+.............+..+.+.| ++..+ ..+..|.
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~-~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~v-~~g~~G~ 194 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGP-GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKYV-AVSSRGN 194 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECC-Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeEE-EEeCCce
Confidence 222221 111 1222222333 32 33334455443322 233233333333456688899988 55444 4455665
Q ss_pred EEEEECCCCCCceE-EecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecC----CccCeEEEEEeCCC
Q 002502 167 IKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPEL 241 (915)
Q Consensus 167 i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~ 241 (915)
+..-.-..++.-.. .......++.+.+.+++. .++ .+..|.+++=....|..-..... ....+..+.+.|++
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~--~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~ 271 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN--LWM-LARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG 271 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC--EEE-EecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCC
Confidence 54321122221111 223446778888888776 444 45567665433344433222221 12357888999987
Q ss_pred CEEEEEEcCCeEEEEeCCCceeeeeecc---CCccEEEEEEecCCCeEEEEecCCeEEEe
Q 002502 242 PIIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~s~~~~~l~~g~~dg~v~i~ 298 (915)
..+++ +.+|.+. .....++.-..... -....+.+.+..+++.++ .+..|.|.-+
T Consensus 272 ~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 272 EIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred CEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 76555 4567554 34444444333321 123577788776665544 5566666553
No 424
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.99 E-value=4.8 Score=47.43 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=61.5
Q ss_pred CEEEEEEcCCeEEEEECCCCceeEEEE---ecCCCEEEEEEeCCC------CEEEEEeCCCeEEEEECCCCceeEEEe--
Q 002502 28 PWILASLYSGTVCIWNYQSQTMAKSFE---VTELPVRSAKFVARK------QWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~------~~l~~g~~dg~i~vwd~~~~~~~~~~~-- 96 (915)
..++++..+|.+.-+..........+. .....|.|+++.+++ ++++.++.|+.++++.+.....+..+.
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 346666667776666543332233332 235578899998764 679999999999999998766666554
Q ss_pred cCCCCEEEEEEcC---CC------CEEEEEEcCCeEEEE
Q 002502 97 AHTDYIRCVAVHP---TL------PYVLSSSDDMLIKLW 126 (915)
Q Consensus 97 ~~~~~i~~l~~s~---~~------~~l~~~~~dg~i~iw 126 (915)
+-+.++.++.+-+ ++ -+|.+|-.+|.+.-.
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3344444444432 22 256677777765544
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=2.1 Score=42.81 Aligned_cols=193 Identities=11% Similarity=0.033 Sum_probs=116.3
Q ss_pred eeEEEec-CCCCEEEEEEcCCCCEEEEEEcCC--eEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEECCCcE
Q 002502 91 KVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (915)
Q Consensus 91 ~~~~~~~-~~~~i~~l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (915)
.+..+.. .......+.|..++.++-+.+.-| .|+.+|+.++.......-...-.--.++.. ++..+...=.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeE
Confidence 3444442 233456788877777666776655 799999999854444333333333344444 34455555567899
Q ss_pred EEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCc-----cCeEEEEEeCCCC
Q 002502 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPELP 242 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~ 242 (915)
.+||..+.+.+.++.-. +.-..++ .+++ .|+.......++++|..+.+....+.... ..+.-+.|. +|.
T Consensus 113 f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYP-GEGWGLT--SDGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEETTTTEEEEEEE-S-SS--EEE--ECSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEccccceEEEEEecC-CcceEEE--cCCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 99999988877777533 3446666 3555 47776677899999998877766665322 235556665 555
Q ss_pred EEEEEEcCCeEEEEeCCCceeeeeecc---------------CCccEEEEEEecCCCeEEEEec
Q 002502 243 IIITGSEDGTVRIWHATTYRLENTLNY---------------GLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
+.|=.-....|...|..+|+....+.. ...-...|++.|..+.+.+.+.
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 555555566788889999987765421 1245789999998877766554
No 426
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.85 E-value=0.027 Score=39.41 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~ 91 (915)
..+|.++.|+|..+.||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4554
No 427
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.016 Score=59.71 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcc------------hhHHHHHhcCCHHHHHHHHHHHHHc-----CCchHHH
Q 002502 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS------------GLLLLYSSLGDAEGISKLASLAKEQ-----GKNNVAF 730 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~------------~l~~l~~~~g~~~~~~~l~~~~~~~-----~~~~~a~ 730 (915)
-..|+.=|..+-+.|++..|.+||..+-..+ +...++..+|....-..-.+.+..- .-+.+++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 4589999999999999999999999875432 2233333444422211111111111 1246788
Q ss_pred HHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcC--------------hhhhhhcCCCccCC
Q 002502 731 LCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--------------PKAAESLADPEEYS 796 (915)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~--------------~~~a~~l~~~~~~~ 796 (915)
.|++.++++++|++-|.++-+.+.-.+.+|++.......=..+|+.|...-+ +|+|-... |..+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~H-pd~~- 406 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHH-PDKN- 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC-CCcC-
Confidence 9999999999999999988877777777777654332222245666654221 12222222 2221
Q ss_pred CccccHHHHHHHHHHHhhccCCCCCCccccc
Q 002502 797 NLFDDWQVALAVESKAAATRGVHPPAEDYVN 827 (915)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (915)
. ..++|+|..|++...+|....++.+
T Consensus 407 ---a--gsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 407 ---A--GSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred ---c--chhHHHHHHHHHHHHHHHHhcCHHH
Confidence 1 1268999999999999988888854
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.67 E-value=2.8 Score=42.34 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=125.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECC------CC-ceeEEEec-----CCCCEEEEEEcCCCCE------------EE
Q 002502 60 VRSAKFVARKQWVVAGADDMFIRVYNYN------TM-DKVKVFEA-----HTDYIRCVAVHPTLPY------------VL 115 (915)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~i~~l~~s~~~~~------------l~ 115 (915)
-..++++|.+.+-++....+...+||.+ .. ..+..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888887788899999986 12 22333331 2345778888754433 57
Q ss_pred EEEcCCeEEEEECCCCce----EEEEeecC-Ccce-EEEEEecC-CCCEEEEE-ECCCcEEEEECCCCCCce--EE----
Q 002502 116 SSSDDMLIKLWDWEKGWM----CTQIFEGH-SHYV-MQVTFNPK-DTNTFASA-SLDRTIKIWNLGSPDPNF--TL---- 181 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~----~~~~~~~~-~~~i-~~~~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~---- 181 (915)
.+++||+|.-|...-+.. ....+... ...| ..+++-.. .+++|..+ -..++|.+||-.-.+... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788999999998643311 11122111 1222 33444321 23444443 457889999853322110 01
Q ss_pred -ecCCCCeeE--------EEEEe-CCCcCEEEEEECCCeEEEEECCCCcEEEEec--CCccCeEEEEEeC------CCCE
Q 002502 182 -DAHQKGVNC--------VDYFT-GGDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHP------ELPI 243 (915)
Q Consensus 182 -~~~~~~v~~--------~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~------~~~~ 243 (915)
.....+.+. +.|.. +.....=+.|..-|.|-+||+. |+.++.+. +.-...+.++..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 111111111 11111 0000012233344789999975 88888774 2333456777765 4556
Q ss_pred EEEEEcCCeEEEEeCCCceeeeeeccCC------ccEEEEEEec
Q 002502 244 IITGSEDGTVRIWHATTYRLENTLNYGL------ERVWAIGYMK 281 (915)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~v~~i~~s~ 281 (915)
|+---.||+|..||..+++.+..+.... ..+|.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6666679999999999998877776543 3467777765
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.65 E-value=3.8 Score=43.69 Aligned_cols=234 Identities=12% Similarity=0.141 Sum_probs=118.2
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE-------ecCCCEEEEEEeCC---CCEEEEEeC-C-------
Q 002502 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-------VTELPVRSAKFVAR---KQWVVAGAD-D------- 78 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~---~~~l~~g~~-d------- 78 (915)
..++|+|.|||..++ +...|.|++++ ..+.....+. ........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999999987554 56699999999 5554422221 13456789999994 334443322 1
Q ss_pred -CeEEEEECCCC-------cee-EEEec---CCCCEEEEEEcCCCCEEEEEEcC-------------CeEEEEECCCCc-
Q 002502 79 -MFIRVYNYNTM-------DKV-KVFEA---HTDYIRCVAVHPTLPYVLSSSDD-------------MLIKLWDWEKGW- 132 (915)
Q Consensus 79 -g~i~vwd~~~~-------~~~-~~~~~---~~~~i~~l~~s~~~~~l~~~~~d-------------g~i~iwd~~~~~- 132 (915)
..|.-|.+..+ +.+ ..+.. ....-..|.|.|+|.+.++.+.. |.|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444544433 111 11222 22345779999999655544432 334334433210
Q ss_pred -----------eEEEEeecCCcceEEEEEecCCCCEEEEEE-CCCcEEEEECCCC-------------------------
Q 002502 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSP------------------------- 175 (915)
Q Consensus 133 -----------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~------------------------- 175 (915)
.....-.++.. ...++|+|..+.++++=. .++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111123333 468899994355544321 1222122212111
Q ss_pred ----CCceEEecCCCCeeEEEEEeCC-----CcCEEEEEECCCeEEEEECCCCcEEE---E-ecCCccCeEEEEEeCCCC
Q 002502 176 ----DPNFTLDAHQKGVNCVDYFTGG-----DKPYLITGSDDHTAKVWDYQTKSCVQ---T-LEGHTHNVSAVCFHPELP 242 (915)
Q Consensus 176 ----~~~~~~~~~~~~v~~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~v~~~~~~~ 242 (915)
.+...+. +...+..+.|.... ++.++++....+.|....+..+..+. . +......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 1223333 33455667776543 22255555556788888876443222 2 233444799999999998
Q ss_pred EEEEEEcCCeEE
Q 002502 243 IIITGSEDGTVR 254 (915)
Q Consensus 243 ~l~~~~~dg~v~ 254 (915)
+.++...+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877788764
No 430
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.63 E-value=0.075 Score=65.14 Aligned_cols=130 Identities=11% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc------CChhHHHHHHHHHHH
Q 002502 619 HNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV------QSESKWKQLGELAMS 680 (915)
Q Consensus 619 ~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~------~~~~~w~~la~~al~ 680 (915)
++.+...+-+.|..+.|.++...... . ...+.+.|++++|.++.+.+ .+...|..|-..+.+
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35555666666666666655433211 0 13455666677666666554 234566666666667
Q ss_pred cCChhhHHHHHHHcCC-----------cchhHHHHHhcCCHHHHHHHHHHHHHcCC------chHHHHHHHHcCCHHHHH
Q 002502 681 TGKLEMAEGCMKQAMD-----------LSGLLLLYSSLGDAEGISKLASLAKEQGK------NNVAFLCLFMLGKLEDCL 743 (915)
Q Consensus 681 ~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~g~~~~~~~l~~~~~~~~~------~~~a~~~~~~~g~~~~a~ 743 (915)
.|+++.|.+.|..+.. |..++..|...|+.+...++-+.....|- ++.....|...|++++|.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 7777777666665531 23455556666666655555554444432 223333444555555555
Q ss_pred HHHHH
Q 002502 744 QLLVE 748 (915)
Q Consensus 744 ~l~~~ 748 (915)
++|.+
T Consensus 635 ~lf~e 639 (1060)
T PLN03218 635 SIYDD 639 (1060)
T ss_pred HHHHH
Confidence 55443
No 431
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.60 E-value=0.14 Score=62.87 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred ccCHHHHhhhcCCCCc---chHHHHHHHHHhCCChhhhhhcccCccc-------e-----eeeecccCCHHHHHHHHHHc
Q 002502 601 RGDLERANEILPSIPK---EHHNSVARFLESRGMIEEAIEVATDPDY-------R-----FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~---~~~~~~~~~~~~~~~~~~al~~~~~~~~-------~-----f~~~l~l~~~~~A~~~a~~~ 665 (915)
.+.+++|..+++.++. ..++.+.+.+-+.|..+.|..+...... . ...+.+.|++++|.++...+
T Consensus 419 ~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4556666555444433 2235555666677777777766433211 1 25667889999999998876
Q ss_pred C------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC---------cchhHHHHHhcCCHHHHHHHHHHHHHcC--C---
Q 002502 666 Q------SESKWKQLGELAMSTGKLEMAEGCMKQAMD---------LSGLLLLYSSLGDAEGISKLASLAKEQG--K--- 725 (915)
Q Consensus 666 ~------~~~~w~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~g~~~~~~~l~~~~~~~~--~--- 725 (915)
. +...|..|-..+.+.|+++.|.++|.++.. |..++..|...|+.+....+-+.....+ -
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 4 567899999999999999999999988742 4577778888888776655544333211 1
Q ss_pred ---chHHHHHHHHcCCHHHHHHHHH
Q 002502 726 ---NNVAFLCLFMLGKLEDCLQLLV 747 (915)
Q Consensus 726 ---~~~a~~~~~~~g~~~~a~~l~~ 747 (915)
++.-..+|...|++++|.++|.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1223344556788777776654
No 432
>PLN03077 Protein ECB2; Provisional
Probab=95.56 E-value=0.099 Score=64.28 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=75.8
Q ss_pred eeecccCCHHHHHHHHHHcCC--hhHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002502 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~g~~~~~~~ 715 (915)
.++.+.|++++|.++...+.. ...|..+...+.+.|+++.|.+.|.++. .|..++..+...|+.+...+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 556678889999888887754 4478888889999999999999988763 23456666777888777777
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHCCC
Q 002502 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVESNR 751 (915)
Q Consensus 716 l~~~~~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~~~ 751 (915)
+-+.+...|-. +.-..+|...|++++|.++|.++..
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 76666666542 2223456677888888888776654
No 433
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.40 E-value=0.15 Score=61.11 Aligned_cols=154 Identities=20% Similarity=0.144 Sum_probs=90.9
Q ss_pred ccCHHHHhhhcCCCCcc---hHHHHHHHHHhCCChhhhhhcccCccce------------eeeecccCCHHHHHHHHHHc
Q 002502 601 RGDLERANEILPSIPKE---HHNSVARFLESRGMIEEAIEVATDPDYR------------FELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 601 ~~~~~~a~~~l~~i~~~---~~~~~~~~~~~~~~~~~al~~~~~~~~~------------f~~~l~l~~~~~A~~~a~~~ 665 (915)
.|++++|.+++..++.. +++.++.-+-+.|+.++|+++....... +......|++++|+++...+
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 56777777666554432 3456666667777777777665432111 13344667777777776654
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcCC------cchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002502 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAMD------LSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...|..+.+.+.+.|+++.|.+.|.++.. |..|+..++..|+.+..+.+++.....+-.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~------ 526 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE------ 526 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC------
Confidence 2 223567777777777777777777776643 234444444555544433333332211111
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002502 733 LFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~ 762 (915)
..+.|.-.+++|.+.|+|++|.++.+..
T Consensus 527 --~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 527 --KLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred --CCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1244667788899999999998887764
No 434
>PHA03098 kelch-like protein; Provisional
Probab=95.26 E-value=0.59 Score=53.98 Aligned_cols=184 Identities=11% Similarity=0.109 Sum_probs=85.9
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCceeEEEec--CCCCEEEEEEcCCCCEEEEEEcC-----CeEEEEECCCCce
Q 002502 67 ARKQWVVAGADDM------FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWM 133 (915)
Q Consensus 67 ~~~~~l~~g~~dg------~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~ 133 (915)
.++..++.|+.++ .+..||..+.+....-.. .......+. -++...+.|+.+ ..+..||..++ .
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-K 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC-c
Confidence 4566677776532 577888877655322111 111112222 246666777654 35778888765 2
Q ss_pred EEEEee-cCCcceEEEEEecCCCCEEEEEECC------CcEEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEE
Q 002502 134 CTQIFE-GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 134 ~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~ 204 (915)
....-. .+...-.+++.. ++..++.|+.+ ..+..||+.+.+-.. ......+ -.++. ..++. +++.
T Consensus 370 W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~-~~~~~--iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAI-YHDGK--IYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEE-EECCE--EEEE
Confidence 222111 111111122222 56777777732 357888887643211 1111111 11222 22332 5555
Q ss_pred EECC--------CeEEEEECCCCcEEEE--ecCCccCeEEEEEeCCCCEEEEEEcC-----CeEEEEeCCCc
Q 002502 205 GSDD--------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (915)
Q Consensus 205 ~~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 261 (915)
|+.+ ..+.+||..+++-... +....... +++. -++.+++.||.+ +.|.+||..+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 6532 2388888876543221 11111111 1222 256666677654 35667776544
No 435
>PHA03098 kelch-like protein; Provisional
Probab=95.20 E-value=0.9 Score=52.46 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=69.4
Q ss_pred CCEEEEEEcC------CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceeEEE
Q 002502 27 EPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVF 95 (915)
Q Consensus 27 ~~~la~~~~d------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~ 95 (915)
+..++.|+.+ ..+..||..+++....-.............-++...+.|+.+ ..+..||..+.+....-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455566543 247778877665432111111111111222367777788764 35778888765543221
Q ss_pred ec-CCCCEEEEEEcCCCCEEEEEEcC------CeEEEEECCCCceEEEEeec-CCcceEEEEEecCCCCEEEEEECCC--
Q 002502 96 EA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASLDR-- 165 (915)
Q Consensus 96 ~~-~~~~i~~l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg-- 165 (915)
.. +...-.+++. -++...+.|+.+ ..+..||..++ .....-.. ....-.++... ++..++.|+.++
T Consensus 375 ~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYID 450 (534)
T ss_pred CcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecCCCCccccCceEEEE--CCEEEEECCccCCC
Confidence 11 1111112222 245566666632 45888998875 22222110 01111122222 466677776432
Q ss_pred ------cEEEEECCCCC
Q 002502 166 ------TIKIWNLGSPD 176 (915)
Q Consensus 166 ------~i~i~d~~~~~ 176 (915)
.+.+||..+++
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 37888887653
No 436
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.15 E-value=0.14 Score=58.60 Aligned_cols=103 Identities=26% Similarity=0.248 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCch
Q 002502 653 GRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNN 727 (915)
Q Consensus 653 ~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~ 727 (915)
|++++|.+++.++ .+...|..||+.+.+.|+++.|..|.. +-.|...+|.+++..+++.+...|+++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l--------lAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--------LAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH--------HHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 7777777776643 346788888888888888888755543 334555677788888888888888888
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002502 728 VAFLCLFML--------GKLEDCLQLLVESNRIPEAALMARSYL 763 (915)
Q Consensus 728 ~a~~~~~~~--------g~~~~a~~l~~~~~~~~~A~~~ar~~~ 763 (915)
+|..||-.. .-+-+-..||.++|...+|++-.+.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 888887653 123566778888888888886555543
No 437
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.06 E-value=0.23 Score=54.71 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHHHHHHhCCChhhhhhcccCc-----cce------eeeecccCCHHHHHHHHHHcCC----------hhHHHHHHHHHH
Q 002502 621 SVARFLESRGMIEEAIEVATDP-----DYR------FELAIQLGRLEVAQEIATEVQS----------ESKWKQLGELAM 679 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~~~~-----~~~------f~~~l~l~~~~~A~~~a~~~~~----------~~~w~~la~~al 679 (915)
.++..+...|..+.|+...... ... -.++.+.|++++|.+..+.+.. ...|..+|..+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3345556667777766543221 111 1345567777777777654311 113456777777
Q ss_pred HcCChhhHHHHHHHcC
Q 002502 680 STGKLEMAEGCMKQAM 695 (915)
Q Consensus 680 ~~~~~~~A~~~y~~~~ 695 (915)
..++++.|+++|.++-
T Consensus 192 ~~~~~~~A~~~~~~al 207 (389)
T PRK11788 192 ARGDLDAARALLKKAL 207 (389)
T ss_pred hCCCHHHHHHHHHHHH
Confidence 7777777777777653
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.97 E-value=6.2 Score=46.44 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=50.8
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCC-CCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEE
Q 002502 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
.|..+..+| ++..++..+..| |.|..+.. ......+.+....+.|-.+.-+.. +.
T Consensus 86 ~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~------------------- 141 (717)
T PF10168_consen 86 EVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FF------------------- 141 (717)
T ss_pred eEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hc-------------------
Confidence 477888888 788888777644 44444422 111122222223333332221111 10
Q ss_pred EEecCCccCeEEEEEeCCC---CEEEEEEcCCeEEEEeCCCce
Q 002502 223 QTLEGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYR 262 (915)
Q Consensus 223 ~~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~v~iwd~~~~~ 262 (915)
...+...|..+.|+|.+ ..|++-..|+++|+||+...+
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 01123456778888863 677777888899999886543
No 439
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.93 E-value=5 Score=40.85 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=84.9
Q ss_pred CEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceeEEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEE-CCCCceE
Q 002502 59 PVRSAKFVARKQWVVAGA---DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEKGWMC 134 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~ 134 (915)
.+.+.+++++++.++... ....+.++... ....... ....+..-.|++++...+....+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 33456666543 3222221 223678889999987666666666666663 2232122
Q ss_pred EEEee-c-CCcceEEEEEecCCCCEEEEEE---CCCcEEEEECC---CCCC------ceEEecCCCCeeEEEEEeCCCcC
Q 002502 135 TQIFE-G-HSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLG---SPDP------NFTLDAHQKGVNCVDYFTGGDKP 200 (915)
Q Consensus 135 ~~~~~-~-~~~~i~~~~~~p~~~~~l~~~~---~dg~i~i~d~~---~~~~------~~~~~~~~~~v~~~~~~~~~~~~ 200 (915)
..... . ....|..+.++| |+..++... .++.|.+--+. .+.+ ..........+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-- 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-- 178 (253)
T ss_pred eEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE--
Confidence 11111 1 112799999999 788777665 24667666542 2211 111223356788999998876
Q ss_pred EEEEEE
Q 002502 201 YLITGS 206 (915)
Q Consensus 201 ~l~~~~ 206 (915)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 444443
No 440
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.90 E-value=0.22 Score=61.84 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=91.4
Q ss_pred ccCHHHHhhhcCCC----C--cchHHHHHHHHHhCCChhhhhhccc-----Cccc------eeeeecccCCHHHHHHHHH
Q 002502 601 RGDLERANEILPSI----P--KEHHNSVARFLESRGMIEEAIEVAT-----DPDY------RFELAIQLGRLEVAQEIAT 663 (915)
Q Consensus 601 ~~~~~~a~~~l~~i----~--~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~------~f~~~l~l~~~~~A~~~a~ 663 (915)
.++++.|...+... + ...+..++..+...|..++|+.... +|+. ...+....|++++|.+++.
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666655443221 1 1123456667777788887776542 2221 1245667888888888887
Q ss_pred Hc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc-------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----
Q 002502 664 EV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL-------SGLLLLYSSLGDAEGISKLASLAKEQGKN----- 726 (915)
Q Consensus 664 ~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~-------~~l~~l~~~~g~~~~~~~l~~~~~~~~~~----- 726 (915)
.+ .++..|..+|..+...|+++.|.++|.++-.. ..+..++...|+.+......+........
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 64 34667888899999999999999999876432 24556667777766554443333322221
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHC
Q 002502 727 NVAFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 727 ~~a~~~~~~~g~~~~a~~l~~~~ 749 (915)
...+.++...|++++|+++|.+.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHH
Confidence 12234455567788887777654
No 441
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.90 E-value=0.19 Score=59.23 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=21.9
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002502 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+..+|++++|.+..+.. ++...|..||..+...|+++.|+.+|.++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555555544322 12334445555555555555555555544
No 442
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.80 E-value=7.6 Score=42.32 Aligned_cols=193 Identities=12% Similarity=0.035 Sum_probs=108.0
Q ss_pred EEEEEEcCCeEEEEECCCCceeEEEEecC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEE
Q 002502 29 WILASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCV 105 (915)
Q Consensus 29 ~la~~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l 105 (915)
.+.++..+|.|.-.|..++..+....... ..+.+-.+..+|+ |++++.+|.+..+|..+|+.+....... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35555678888888888887654333221 2233333333665 8888889999999998999988887655 112222
Q ss_pred EEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC--CcceEEEEEecCCCCEEEEEEC--CCcEEEEECCCCCCceEE
Q 002502 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTL 181 (915)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 181 (915)
..-.++ .+..++.+|.+...|..++...-...... ...+..-... ....+..+.. ++.+.-.|..++......
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~--~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI--ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee--ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222233 34455577888888888773322211110 1111111111 2344555554 556777777777665553
Q ss_pred ec----CCC------CeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 002502 182 DA----HQK------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (915)
Q Consensus 182 ~~----~~~------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 228 (915)
.. ... .+..-...-++ -+..++.++.+...|..+++.+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 21 111 11111111122 2567778888999999999998888753
No 443
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.77 E-value=0.35 Score=44.00 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=73.2
Q ss_pred HHHHHHHhCCChhhhhhcc-cCcccee----eeecccCCHHHHHHHHHH---c--CChhHHHHHHHHHHHcCChhhHHHH
Q 002502 621 SVARFLESRGMIEEAIEVA-TDPDYRF----ELAIQLGRLEVAQEIATE---V--QSESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 621 ~~~~~~~~~~~~~~al~~~-~~~~~~f----~~~l~l~~~~~A~~~a~~---~--~~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
.+..|+..-|-......+. .+....+ ....+.|++++|.++.+. + .+..-|-.||-.+-..|+++.|+.|
T Consensus 12 ~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 12 DTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455666555555444444 3322222 334577888888777653 3 3477999999999999999999999
Q ss_pred HHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHH
Q 002502 691 MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMA 759 (915)
Q Consensus 691 y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a 759 (915)
|.++..++- .|+.- .--++.|++.+|+.+.|.+.|. .|+..+
T Consensus 92 Y~~A~~L~~--------ddp~~-------------~~~ag~c~L~lG~~~~A~~aF~------~Ai~~~ 133 (157)
T PRK15363 92 YGRAAQIKI--------DAPQA-------------PWAAAECYLACDNVCYAIKALK------AVVRIC 133 (157)
T ss_pred HHHHHhcCC--------CCchH-------------HHHHHHHHHHcCCHHHHHHHHH------HHHHHh
Confidence 998754321 22111 1236778889999999988876 455555
No 444
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.75 E-value=0.16 Score=56.00 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=73.6
Q ss_pred HHHHHHHHhCCChhhhhhcccC----ccce-----------eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHH
Q 002502 620 NSVARFLESRGMIEEAIEVATD----PDYR-----------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAM 679 (915)
Q Consensus 620 ~~~~~~~~~~~~~~~al~~~~~----~~~~-----------f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al 679 (915)
..++.++...|..+.|+..... +... -..+...|+++.|.++.... .....+..++..+.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 4445566667777777654321 1100 13345678888888776654 23456778888888
Q ss_pred HcCChhhHHHHHHHcCCcc-------------hhHHHHHhcCCHHHHHHHHHHHHHcC-Cc----hHHHHHHHHcCCHHH
Q 002502 680 STGKLEMAEGCMKQAMDLS-------------GLLLLYSSLGDAEGISKLASLAKEQG-KN----NVAFLCLFMLGKLED 741 (915)
Q Consensus 680 ~~~~~~~A~~~y~~~~d~~-------------~l~~l~~~~g~~~~~~~l~~~~~~~~-~~----~~a~~~~~~~g~~~~ 741 (915)
..|+++.|.++|.++.... .+..++...|+.+......+.+.... .. ...+.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888887763221 22334445666555544433333222 11 122344555666666
Q ss_pred HHHHHHHCC
Q 002502 742 CLQLLVESN 750 (915)
Q Consensus 742 a~~l~~~~~ 750 (915)
|+++|.+.-
T Consensus 233 A~~~~~~~~ 241 (389)
T PRK11788 233 AIEALERVE 241 (389)
T ss_pred HHHHHHHHH
Confidence 666666543
No 445
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.35 Score=56.64 Aligned_cols=140 Identities=12% Similarity=0.078 Sum_probs=86.2
Q ss_pred eEEEEEecCCCCEEEE--EECCCcEEEEECCCCCCce-----------EEecCCCCeeEEEEEeCCCcCEEEEEECCCeE
Q 002502 145 VMQVTFNPKDTNTFAS--ASLDRTIKIWNLGSPDPNF-----------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 145 i~~~~~~p~~~~~l~~--~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
+..+...+ |....++ .+.+-.|..||++...... +.........++.|.|.-.. ..++...|+.|
T Consensus 103 i~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dlsl 180 (1405)
T KOG3630|consen 103 IVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLSL 180 (1405)
T ss_pred ceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccch
Confidence 44444455 4433332 3334468889986532111 11112234567888886543 46667788888
Q ss_pred EEEECCCCc-EEEEecCCccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc----CCccEEEEEEecCCCeE
Q 002502 212 KVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRI 286 (915)
Q Consensus 212 ~iwd~~~~~-~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l 286 (915)
++..+.... .+..+. .....++++|+|.|+.+++|-.+|++.-|... ++....+.. ...+|.+++|-....++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 887764322 223322 45568999999999999999999999998743 443333322 14689999998776666
Q ss_pred EE
Q 002502 287 VI 288 (915)
Q Consensus 287 ~~ 288 (915)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 54
No 446
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.28 Score=51.78 Aligned_cols=60 Identities=30% Similarity=0.318 Sum_probs=42.9
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 002502 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM 735 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~ 735 (915)
..++.+|-.||+-+++.++++.|++||.++ +|..+ ..+.+|+++-++-++.+.|..++..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-----------~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-----------SALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 456889999999999999999999999986 34432 2234566666655556666555543
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.37 E-value=8.9 Score=41.63 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=76.5
Q ss_pred CEEEEEEeCCCCEEEEEe-----------CCC-eEEEEECCC--Cc--eeEEEecCCCCEEEEEEcCCCCEEEEEEcCCe
Q 002502 59 PVRSAKFVARKQWVVAGA-----------DDM-FIRVYNYNT--MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~-----------~dg-~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 122 (915)
....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.......+.|++.+++ |++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 456789999998776642 223 677776432 22 234444344456889999988 555554433
Q ss_pred EEEEECCCC-------ceEEEEeec----CCcceEEEEEecCCCCEEEEEECC-------------------CcEEEEEC
Q 002502 123 IKLWDWEKG-------WMCTQIFEG----HSHYVMQVTFNPKDTNTFASASLD-------------------RTIKIWNL 172 (915)
Q Consensus 123 i~iwd~~~~-------~~~~~~~~~----~~~~i~~~~~~p~~~~~l~~~~~d-------------------g~i~i~d~ 172 (915)
.++.|.... ..+...+.. +.+....+.|.| ++.+.++-+.. |.|..++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 334354321 112222222 134477899999 77666554421 34555555
Q ss_pred CCCCCceEEecCCCCeeEEEEEeCCCcCEEEE
Q 002502 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (915)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (915)
.+++. ..+...-.....++|++.++ ++++
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~--l~~t 200 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGD--VFFC 200 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCC--EEEE
Confidence 54432 22222233456788888776 4444
No 448
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.37 E-value=0.5 Score=60.06 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=72.9
Q ss_pred ecccCCHHHHHHHHHHc-CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHH
Q 002502 649 AIQLGRLEVAQEIATEV-QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASL 719 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~~~~~l~~~ 719 (915)
....|++++|.++++.. .++..+..||..++..|+++.|+.+|.++-.. ..+..+|...|+.+......+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45778889999888753 34567888999999999999999999977532 2556677778887766655554
Q ss_pred HHHcCCc-----hHHHHHHHHcCCHHHHHHHHHHCC
Q 002502 720 AKEQGKN-----NVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 720 ~~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
+...... ...+.++...|++++|+++|.+.-
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4433211 123456667889999998888753
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=94.37 E-value=1.9 Score=48.78 Aligned_cols=180 Identities=9% Similarity=0.055 Sum_probs=83.1
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeEEEecCCCCE-EEEEEcCCCCEEEEEEcC--CeEEEEECCCC-ceEEEEe
Q 002502 68 RKQWVVAGADDM-----FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD--MLIKLWDWEKG-WMCTQIF 138 (915)
Q Consensus 68 ~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~ 138 (915)
++..+++|+.++ .+..||..+.+....-.-..... .+++ .-++...++|+.+ ..+..||..++ |.....+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455667776542 56778887755433221111111 1222 2356666677653 45788887655 2221122
Q ss_pred ecCCcceEEEEEecCCCCEEEEEECCC---cEEEEECCCCCCceEEecCCCC--eeEEEEEeCCCcCEEEEEECCCeEEE
Q 002502 139 EGHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKV 213 (915)
Q Consensus 139 ~~~~~~i~~~~~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (915)
...... .+++.. ++...+.|+.++ .+..||..+.+-... .....+ -.+++ ..++. +.+.| |.+.+
T Consensus 350 ~~~r~~-~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~-~~~~~--IYv~G---G~~e~ 419 (480)
T PHA02790 350 LKPRCN-PAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCAL-VFGRR--LFLVG---RNAEF 419 (480)
T ss_pred CCCCcc-cEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEE-EECCE--EEEEC---CceEE
Confidence 111111 122222 577778877654 467788765432111 111111 11222 22333 44545 35778
Q ss_pred EECCCCcEEE--EecCCccCeEEEEEeCCCCEEEEEEcC-----CeEEEEeCCC
Q 002502 214 WDYQTKSCVQ--TLEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATT 260 (915)
Q Consensus 214 wd~~~~~~~~--~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~v~iwd~~~ 260 (915)
||..+++-.. .+....... +++ .-++++.++||.+ ..+..||..+
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 8887654322 121111112 222 2356677777754 2355555543
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.34 E-value=14 Score=43.66 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=55.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECC---------CCcee---EEE--------ecCCCCEEEEEEcCC---CCEEE
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYN---------TMDKV---KVF--------EAHTDYIRCVAVHPT---LPYVL 115 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~---------~~~~~---~~~--------~~~~~~i~~l~~s~~---~~~l~ 115 (915)
.|..+..+|+|+.++..|..|...+.=.. .|+.. +++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58889999999999999887755443211 11111 111 133457899999996 57899
Q ss_pred EEEcCCeEEEEECCCCceEEEEe
Q 002502 116 SSSDDMLIKLWDWEKGWMCTQIF 138 (915)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~ 138 (915)
+-+.|+++++||+.....+.+++
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEecCCEEEEEecCCCCCCeEEE
Confidence 99999999999998654444443
No 451
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=1.8 Score=53.03 Aligned_cols=231 Identities=11% Similarity=0.120 Sum_probs=111.9
Q ss_pred CCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeE
Q 002502 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (915)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~ 93 (915)
......++|+|...++|.+..+|.|++|-...-+......... ..+..+.|-.......+...+..+.+|.......+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 3466789999999999999999999999854322222111111 122223333333333344445556666543221111
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEE-EEecCC-CCEEEEEECCCcEEEEE
Q 002502 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV-TFNPKD-TNTFASASLDRTIKIWN 171 (915)
Q Consensus 94 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~p~~-~~~l~~~~~dg~i~i~d 171 (915)
+...+.+..-.+--.. +.| ..+.+++||+.-.+.....+......-... .+.+.. .-..... +-.-..|.
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~ 186 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI--DLDTVLIS 186 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc--ccccceee
Confidence 1222333332222223 444 778888888764322111111111100000 011000 0000000 11111111
Q ss_pred CCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEEEecCCccCeEEEEEeCCCCEEEEEEcCC
Q 002502 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (915)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 251 (915)
+.... ..+..+..++.+..+..... +..+...+.+.+|+.........+.. ....+++++..++++..||
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dg 256 (993)
T KOG1983|consen 187 LPDAY--LGLSLIEYESLQVLYYSPTK---ILIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDG 256 (993)
T ss_pred ccccc--ccccccccccceeeeecCCC---cceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecC
Confidence 11111 22334555566666655544 56666677777777543332222221 1122288899999999999
Q ss_pred eEEEEeCCCcee
Q 002502 252 TVRIWHATTYRL 263 (915)
Q Consensus 252 ~v~iwd~~~~~~ 263 (915)
.+.+||...+..
T Consensus 257 s~~fWd~s~g~~ 268 (993)
T KOG1983|consen 257 SYAFWDVSSGKL 268 (993)
T ss_pred CEEeeecCCCce
Confidence 999999988765
No 452
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.28 E-value=0.22 Score=47.28 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------hhHHHHHhcCCHHHHHHHHHHH----HHcCCch-----
Q 002502 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----------GLLLLYSSLGDAEGISKLASLA----KEQGKNN----- 727 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~g~~~~~~~l~~~~----~~~~~~~----- 727 (915)
...|..+|+++.+.|+++.|.+||.++.++- .++++....+|...+......+ ...|+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4578899999999999999999999999884 5667777788887776543332 2222221
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHCC
Q 002502 728 --VAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 728 --~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
-.+..++..++|.+|.++|+++.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 13344556688999999998775
No 453
>PLN03077 Protein ECB2; Provisional
Probab=94.27 E-value=0.24 Score=60.89 Aligned_cols=156 Identities=19% Similarity=0.103 Sum_probs=108.6
Q ss_pred HccCHHHHhhhcCCCCcc--hHHHHHHHHHhCCChhhhhhcccC-------ccce-e----eeecccCCHHHHHHHHHHc
Q 002502 600 MRGDLERANEILPSIPKE--HHNSVARFLESRGMIEEAIEVATD-------PDYR-F----ELAIQLGRLEVAQEIATEV 665 (915)
Q Consensus 600 ~~~~~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~al~~~~~-------~~~~-f----~~~l~l~~~~~A~~~a~~~ 665 (915)
..|.+++|..++..++.. .++.+..-+-+.|+.++|+++... |+.. | ..+...|++++|+++...+
T Consensus 536 k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 368888887777665332 246777777888999999887643 2221 2 3445779999999998765
Q ss_pred C-------ChhHHHHHHHHHHHcCChhhHHHHHHHcC------CcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHH
Q 002502 666 Q-------SESKWKQLGELAMSTGKLEMAEGCMKQAM------DLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLC 732 (915)
Q Consensus 666 ~-------~~~~w~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~ 732 (915)
. +...+..+.+.+.+.|+++.|++.+.++. -|..|+..|+..++.+..+.+++.....+-.+.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~---- 691 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV---- 691 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc----
Confidence 3 34578999999999999999999999874 233555666677776665555554444333332
Q ss_pred HHHcCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002502 733 LFMLGKLEDCLQLLVESNRIPEAALMARSYL 763 (915)
Q Consensus 733 ~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~ 763 (915)
+-+-.-..+|.+.|+|++|..+++...
T Consensus 692 ----~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 692 ----GYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred ----chHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 224445678999999999998887653
No 454
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.24 E-value=0.2 Score=52.04 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHH----HHHHHHHHHHcCCchHH
Q 002502 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEG----ISKLASLAKEQGKNNVA 729 (915)
Q Consensus 654 ~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~----~~~l~~~~~~~~~~~~a 729 (915)
++++|-.+ ..+.|..+-..++++.|.+||.++. .+|...++... ....+.+.... +...|
T Consensus 30 ~~e~Aa~~---------y~~Aa~~fk~~~~~~~A~~ay~kAa------~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADL---------YEKAANCFKLAKDWEKAAEAYEKAA------DCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHH---------HHHHHHHHHHTT-CHHHHHHHHHHH------HHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHH---------HHHHHHHHHHHhccchhHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 56666554 4677778888888888888888763 33444444222 12223333222 33444
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHHH----HHHhcCCC--hHHHHHHHHHHhhh
Q 002502 730 FLCLFMLGKLEDCLQLLVESNRIPEAAL----MARSYLPS--KVSEIVAIWRKDLQ 779 (915)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~~----~ar~~~~~--~~~~~~~~w~~~L~ 779 (915)
..+ +++|+++|.+.|++..|+. +++-|... .....++.|++++.
T Consensus 94 i~~------~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 94 IEC------YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHH------HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 3677888888888888763 44445444 66667777776664
No 455
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.22 E-value=0.38 Score=56.68 Aligned_cols=149 Identities=9% Similarity=-0.004 Sum_probs=79.0
Q ss_pred HccCHHHHhhhcCCC----Ccch--HHHHHHHHHhCCChhhhhhcc-----cCccce------eeeecccCCHHHHHHHH
Q 002502 600 MRGDLERANEILPSI----PKEH--HNSVARFLESRGMIEEAIEVA-----TDPDYR------FELAIQLGRLEVAQEIA 662 (915)
Q Consensus 600 ~~~~~~~a~~~l~~i----~~~~--~~~~~~~~~~~~~~~~al~~~-----~~~~~~------f~~~l~l~~~~~A~~~a 662 (915)
..|++.+|..++..+ |... +..+..-....|..+.|+... .+|+.. -.++.+.|++++|.+.+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 367777766554433 1111 111222223366666666543 233332 14556778888887776
Q ss_pred HHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCC----cch---hHHHHHhcCCHHHHHHHHHHHHHcCC-c---
Q 002502 663 TEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD----LSG---LLLLYSSLGDAEGISKLASLAKEQGK-N--- 726 (915)
Q Consensus 663 ~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d----~~~---l~~l~~~~g~~~~~~~l~~~~~~~~~-~--- 726 (915)
++. ++...|..+|..+...|+++.|..+|.+.-. ... ....+...|+.+......+.+..... .
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 542 3456788888888888888888888875521 110 11234456665554444333322211 0
Q ss_pred --hHHHHHHHHcCCHHHHHHHHHH
Q 002502 727 --NVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 727 --~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
...+.++...|++++|++.|.+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223455567777777766543
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=94.10 E-value=2.1 Score=48.47 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=67.4
Q ss_pred CCEEEEEEcC-----CeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCceeEEEecCC
Q 002502 27 EPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVKVFEAHT 99 (915)
Q Consensus 27 ~~~la~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~ 99 (915)
+..+++|+.+ ..+..||..++.....-.............-++...++|+.+ ..+..||..+++....-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 4445666643 247778877654332211111111111123467777777753 357788876554332211111
Q ss_pred CCEEEEEEcCCCCEEEEEEcC---CeEEEEECCCCceEEEEee-cCCcceEEEEEecCCCCEEEEEECCCcEEEEECCCC
Q 002502 100 DYIRCVAVHPTLPYVLSSSDD---MLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (915)
Q Consensus 100 ~~i~~l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 175 (915)
..-......-+|+..++|+.+ ..+..||.+++ .....-. .....-.+++.. ++.+.+.| |.+.+||..++
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCC
Confidence 111111122256666677654 34678888765 3322211 111111122222 45566665 45778888665
Q ss_pred C
Q 002502 176 D 176 (915)
Q Consensus 176 ~ 176 (915)
+
T Consensus 426 ~ 426 (480)
T PHA02790 426 T 426 (480)
T ss_pred c
Confidence 3
No 457
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.03 E-value=0.35 Score=50.52 Aligned_cols=165 Identities=24% Similarity=0.296 Sum_probs=103.3
Q ss_pred HHHHHHHccCHHHHhhhcCCCCcchH--------H-HHHHHHHhC-------CChhhhhhcccCccce----eeeecccC
Q 002502 594 EYKTLVMRGDLERANEILPSIPKEHH--------N-SVARFLESR-------GMIEEAIEVATDPDYR----FELAIQLG 653 (915)
Q Consensus 594 ~~~~~~~~~~~~~a~~~l~~i~~~~~--------~-~~~~~~~~~-------~~~~~al~~~~~~~~~----f~~~l~l~ 653 (915)
.-...+.+||++.|.++|+....... + .+.+|++.- .+.+.|+..-+-..+. =..+...|
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC
Confidence 33455668899998888754432211 1 123555443 3334444332222111 15567889
Q ss_pred CHHHHHHHHHHc-CC----hhHHHHHHHHHHHcCChhhHHHHHHHcC---------------------CcchhHHHHHh-
Q 002502 654 RLEVAQEIATEV-QS----ESKWKQLGELAMSTGKLEMAEGCMKQAM---------------------DLSGLLLLYSS- 706 (915)
Q Consensus 654 ~~~~A~~~a~~~-~~----~~~w~~la~~al~~~~~~~A~~~y~~~~---------------------d~~~l~~l~~~- 706 (915)
+++.|.+..+.. .+ .+..-.+|-.|...|+++.|.+||.+.. |...++-+|..
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999998753 22 2234467888999999999999998764 22222223322
Q ss_pred ----cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCC--------HHHHHHHHHHCCCchHHHHH
Q 002502 707 ----LGDAEGISKLASLAKEQGKNNVAFLCLFMLGK--------LEDCLQLLVESNRIPEAALM 758 (915)
Q Consensus 707 ----~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~--------~~~a~~l~~~~~~~~~A~~~ 758 (915)
-.|+..+.+|+++-..+|+-..||.|+.-.=+ ++=-..+|+.+.-|++|+.+
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666778899999999999999998643211 24455678888888888743
No 458
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.02 E-value=0.67 Score=54.65 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=25.1
Q ss_pred cccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh----HHHHHHHcC
Q 002502 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM----AEGCMKQAM 695 (915)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~----A~~~y~~~~ 695 (915)
+.+|++++|.+..+.. +++..+..||..+...|+++. |+.+|.++-
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 3456666666555432 234455566666666666654 555555543
No 459
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.94 E-value=0.49 Score=51.80 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=49.8
Q ss_pred eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHH
Q 002502 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGI 713 (915)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~~~ 713 (915)
..+-+.|.+|.|....++. .=+..+..||...-..|++..|+.||.++-.+ ..|..+|+..|..++.
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 5677889999988877643 22678889999999999999999999987533 2445556666655544
Q ss_pred HH
Q 002502 714 SK 715 (915)
Q Consensus 714 ~~ 715 (915)
.+
T Consensus 374 ~~ 375 (966)
T KOG4626|consen 374 TR 375 (966)
T ss_pred HH
Confidence 33
No 460
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.79 E-value=0.47 Score=46.15 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=53.1
Q ss_pred cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHH-HHHhcCC--HHHHHHHHHHHHHcCCch-H----
Q 002502 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLL-LYSSLGD--AEGISKLASLAKEQGKNN-V---- 728 (915)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~-l~~~~g~--~~~~~~l~~~~~~~~~~~-~---- 728 (915)
-++...|..||..++..|+++.|..+|.++-.+. .+.. +|...|+ .+....+-+.+...+-.+ .
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 3668899999999999999999999999886432 2233 2344454 233333333333333322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHC
Q 002502 729 AFLCLFMLGKLEDCLQLLVES 749 (915)
Q Consensus 729 a~~~~~~~g~~~~a~~l~~~~ 749 (915)
-+.+++..|++++|+..|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 234455667777777776654
No 461
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.76 E-value=11 Score=40.16 Aligned_cols=231 Identities=13% Similarity=0.068 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---eEEE----ecCCCCEEEEEEcCC---CCEEEEEEcC--------
Q 002502 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKVF----EAHTDYIRCVAVHPT---LPYVLSSSDD-------- 120 (915)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---~~~l~~~~~d-------- 120 (915)
..++|+|.|||+.+++ ...|.|++++ ..+.. +..+ .........++++|+ +.+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999976665 5699999999 44443 2222 123456899999994 3455444331
Q ss_pred -CeEEEEECCCC-------ceEEEEeec---CCcceEEEEEecCCCCEEEEEECC-------------CcEEEEECCCCC
Q 002502 121 -MLIKLWDWEKG-------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLD-------------RTIKIWNLGSPD 176 (915)
Q Consensus 121 -g~i~iwd~~~~-------~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~d-------------g~i~i~d~~~~~ 176 (915)
..|.-|....+ ..+...... ..+.-..+.|.| ++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24444544332 111122222 344567799999 77666555442 233333432210
Q ss_pred ------------CceEEecCCCCeeEEEEEeC-CCcCEEEEE--ECCCeEEEEECCCC----------------------
Q 002502 177 ------------PNFTLDAHQKGVNCVDYFTG-GDKPYLITG--SDDHTAKVWDYQTK---------------------- 219 (915)
Q Consensus 177 ------------~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~--~~dg~i~iwd~~~~---------------------- 219 (915)
....+..--.....++|.|. +. |.++ +.++.=.|--+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~---l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR---LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE---EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCc---EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 01111111223457888887 43 3333 22222222111111
Q ss_pred -------cEEEEecCCccCeEEEEEeCC-------CCEEEEEEcCCeEEEEeCCCceee---ee-eccCCccEEEEEEec
Q 002502 220 -------SCVQTLEGHTHNVSAVCFHPE-------LPIIITGSEDGTVRIWHATTYRLE---NT-LNYGLERVWAIGYMK 281 (915)
Q Consensus 220 -------~~~~~~~~~~~~v~~v~~~~~-------~~~l~~~~~dg~v~iwd~~~~~~~---~~-~~~~~~~v~~i~~s~ 281 (915)
.++..+..| ..+..+.|... |.++++.-..+.|....+.....+ .. +.....++..+++.|
T Consensus 237 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp SS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred cCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 122233323 45666666643 345555555567777776644322 12 223334899999999
Q ss_pred CCCeEEEEecCCeEE
Q 002502 282 SSRRIVIGYDEGTIM 296 (915)
Q Consensus 282 ~~~~l~~g~~dg~v~ 296 (915)
||.+.++...+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888877777764
No 462
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.59 E-value=0.72 Score=57.29 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=68.8
Q ss_pred HHHHHHhCCChhhhhhcccC-----ccce-----eeeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhh
Q 002502 622 VARFLESRGMIEEAIEVATD-----PDYR-----FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM 686 (915)
Q Consensus 622 ~~~~~~~~~~~~~al~~~~~-----~~~~-----f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~ 686 (915)
+...+...|.+++|+..... |... .......|++++|.+..... ++...+..+|..+...|+++.
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 34445556666666554321 1111 13445677777777766542 345677778888888888888
Q ss_pred HHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHHHHHcCCchH----HHHHHHHcCCHHHHHHHHHH
Q 002502 687 AEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASLAKEQGKNNV----AFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 687 A~~~y~~~~d~--------~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~----a~~~~~~~g~~~~a~~l~~~ 748 (915)
|.++|.++-.. ..+..+|...|+..-+..+.+.......... -+.++...|++++|+++|.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888876422 2455566666663322222222222222211 12334455666666666553
No 463
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.57 E-value=21 Score=42.63 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=104.9
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEeecCCc--------ceEEEEEec---------------CCCCEEEEEECCCcE
Q 002502 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH--------YVMQVTFNP---------------KDTNTFASASLDRTI 167 (915)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~i~~~~~~p---------------~~~~~l~~~~~dg~i 167 (915)
+..|++++.++.|.-.|..+++..=+ +..... ....+.+.. .....++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~-~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWK-FDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEE-EcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 45777888888888888888743322 221110 011222221 023478889999999
Q ss_pred EEEECCCCCCceEEecCCCCee-------------EEEEEeCCCcCEEEEEEC----------CCeEEEEECCCCcEEEE
Q 002502 168 KIWNLGSPDPNFTLDAHQKGVN-------------CVDYFTGGDKPYLITGSD----------DHTAKVWDYQTKSCVQT 224 (915)
Q Consensus 168 ~i~d~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~ 224 (915)
.-.|..+++.+..+.. .+.+. .+.-.|--.+..+++|+. +|.|+-+|.++|+.+..
T Consensus 273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999998876532 11110 001111000114666643 68899999999998887
Q ss_pred ecCC---------c--------cCe-EEEEEeCCCCEEEEEE------------------cCCeEEEEeCCCceeeeeec
Q 002502 225 LEGH---------T--------HNV-SAVCFHPELPIIITGS------------------EDGTVRIWHATTYRLENTLN 268 (915)
Q Consensus 225 ~~~~---------~--------~~v-~~v~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~ 268 (915)
+..- . ..+ ..+++.+...+++.+. ..+.|.-.|..||+....++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 6421 0 011 2345555554444422 12457777888999888777
Q ss_pred cCCccEEEEE---------Eec-CCC---eEEEEecCCeEEE
Q 002502 269 YGLERVWAIG---------YMK-SSR---RIVIGYDEGTIMV 297 (915)
Q Consensus 269 ~~~~~v~~i~---------~s~-~~~---~l~~g~~dg~v~i 297 (915)
.....+|... +.. +|+ .++.++.+|.+.+
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~v 473 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYV 473 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEE
Confidence 6333333311 222 442 5666777777666
No 464
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.51 E-value=0.44 Score=54.68 Aligned_cols=62 Identities=23% Similarity=0.347 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 002502 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM 735 (915)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~ 735 (915)
.+...|..||++..+.|+++.|.-||.|+=-+ .-.+...+.+-+.+..+.|+...|...+.+
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 45789999999999999999999999986322 222234455555555566666666655544
No 465
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.48 E-value=3 Score=45.31 Aligned_cols=140 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred CCEEEEEEcCCCCEEEEEE-----------cCC-eEEEEECCC--Cce--eEEEEecCCCEEEEEEeCCCCEEEEEeCCC
Q 002502 16 ERVKSVDLHPSEPWILASL-----------YSG-TVCIWNYQS--QTM--AKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (915)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 79 (915)
.....|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+...-...+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4578899999999665532 223 788886443 332 23343333456889999998 44444443
Q ss_pred eEEEEECCCC-----ceeE---EEec----CCCCEEEEEEcCCCCEEEEEEcC-------------------CeEEEEEC
Q 002502 80 FIRVYNYNTM-----DKVK---VFEA----HTDYIRCVAVHPTLPYVLSSSDD-------------------MLIKLWDW 128 (915)
Q Consensus 80 ~i~vwd~~~~-----~~~~---~~~~----~~~~i~~l~~s~~~~~l~~~~~d-------------------g~i~iwd~ 128 (915)
..++.+.+.. +... .+.. +......+.|.|+|.+.++-+.. |.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334344321 2111 1222 12347789999999765544321 44555555
Q ss_pred CCCceEEEEeecCCcceEEEEEecCCCCEEEE
Q 002502 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
+++ .....-.++ .....++|+| +++++++
T Consensus 172 dg~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~t 200 (367)
T TIGR02604 172 DGG-KLRVVAHGF-QNPYGHSVDS-WGDVFFC 200 (367)
T ss_pred CCC-eEEEEecCc-CCCccceECC-CCCEEEE
Confidence 554 222222222 3345777877 6666554
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.43 E-value=9.9 Score=38.60 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECC-------CCceeEEEEe-----cCCCEEEEEEeCCCC------------EEE
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ-------SQTMAKSFEV-----TELPVRSAKFVARKQ------------WVV 73 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~-------~~~~~~~~~~-----~~~~v~~~~~s~~~~------------~l~ 73 (915)
-..|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4689999999877776668899999986 1223333332 124577788875433 367
Q ss_pred EEeCCCeEEEEECCCCce-----eEEEe-cCCCC-EEEEEEcC--CCCEEEEE-EcCCeEEEEECCCCceEEEE---eec
Q 002502 74 AGADDMFIRVYNYNTMDK-----VKVFE-AHTDY-IRCVAVHP--TLPYVLSS-SDDMLIKLWDWEKGWMCTQI---FEG 140 (915)
Q Consensus 74 ~g~~dg~i~vwd~~~~~~-----~~~~~-~~~~~-i~~l~~s~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~ 140 (915)
.+++||+|.-|+..-+.. ...+. ...+. -..+++-. .+.+|..+ -..++|.++|-.-. .... +..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCccC
Confidence 778999999998532211 12222 11122 23455443 34555544 34688888874422 1111 000
Q ss_pred ----------------CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEe--cCCCCeeEEEEEeCC----C
Q 002502 141 ----------------HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGG----D 198 (915)
Q Consensus 141 ----------------~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~----~ 198 (915)
..-.|+-..-.+ +...=+.|..-|.|-+||+. ++.++++. +.-...+.++..|.. .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000111111112 11122233345789999974 45555553 222334566665531 1
Q ss_pred cCEEEEEECCCeEEEEECCCCcEEEEecCCcc------CeEEEEEeC
Q 002502 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHP 239 (915)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~v~~~~ 239 (915)
+.+|+--..||+|..||..+++.+-.+....+ .++.+.|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 22666667899999999999988777765433 356667655
No 467
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.34 E-value=0.89 Score=45.36 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=32.8
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002502 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (915)
+...|++++|.+..++. .+...|..+|..+...|+++.|+++|.++-
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566677666665432 345677788888888888888888888764
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=2.7 Score=44.45 Aligned_cols=147 Identities=9% Similarity=0.021 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCC--ceeEEE-ecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceE---EEEeecC
Q 002502 68 RKQWVVAGADDMFIRVYNYNTM--DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC---TQIFEGH 141 (915)
Q Consensus 68 ~~~~l~~g~~dg~i~vwd~~~~--~~~~~~-~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~ 141 (915)
|.+..+.+...|.+.-|-.+.. .....+ ....++|.++.||+|++.|++--.+.+|.+++....... ....+..
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 3333333334455555544321 222222 234679999999999999999999999999998443111 1222233
Q ss_pred CcceEEEEEecCCCCEEEEEECCCcEEEEECCCC-CCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC
Q 002502 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (915)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (915)
+..|...+|+. ..-++..+..| +-+|..... ...+..+.+...|+-..|+++..--+++++-..+++.=+-++
T Consensus 112 ~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 112 NANILGFCWTS--STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred cceeEEEEEec--CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 45588999985 45566655444 566655432 234445677888898999888764233333233333333333
No 469
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=1.8 Score=45.65 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=89.9
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCC--ceeEEEE-ecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcee----
Q 002502 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV---- 92 (915)
Q Consensus 20 ~~~~sp~~~~la~~~~dg~v~iwd~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~---- 92 (915)
.+-|...++.|.+ ..+|.+.=|-+... ....++. ...++|.++.||+|.+.||+--.+..|.+++....+..
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3445444444433 34555666654432 2223333 35679999999999999999999999999998433322
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCCcceEEEEEecCCCCEEEEEE
Q 002502 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 93 ~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
...+..+..|....|+.+ .-++..+..| +-+|.........+..+.|+..|.-..|.| +.+.+..++
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeec
Confidence 222334556999999976 4566666555 677776655455666677888888888888 555544443
No 470
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.06 E-value=3 Score=47.55 Aligned_cols=101 Identities=10% Similarity=0.207 Sum_probs=67.8
Q ss_pred CEEEEEECCCcEEEEECCCCCCceEEe-cCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECC-----C----CcEEEEe
Q 002502 156 NTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-----T----KSCVQTL 225 (915)
Q Consensus 156 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~----~~~~~~~ 225 (915)
...++.+...++.|||.+.+.....-. .....|..+.|...+++..+++.+..+.|.++.-. + ..+++.+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 333333444569999998876433222 35788999999988877788888889999988531 1 1233333
Q ss_pred --cCCc-cCeEEEEEeCCCCEEEEEEcCCeEEEEeC
Q 002502 226 --EGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (915)
Q Consensus 226 --~~~~-~~v~~v~~~~~~~~l~~~~~dg~v~iwd~ 258 (915)
..+. .+|.+..|.++|.+++.+ ++.+.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 2233 679999999999655443 457999873
No 471
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.00 E-value=17 Score=40.11 Aligned_cols=148 Identities=13% Similarity=0.071 Sum_probs=83.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceeEEEecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002502 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (915)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (915)
..+|..+.+...| .+.+|+.|| +..||..+++.+..-.... ..|..+.-+-.| .|.+|+.+| |++.+.++. ...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~-~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGW-RAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhc-ccc
Confidence 4567778887777 477788887 6678888877766544333 556666666555 588888877 677776652 222
Q ss_pred EEeec-CCcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecC---CCCeeEEEEEeCCCcCEEEEEECCCeE
Q 002502 136 QIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH---QKGVNCVDYFTGGDKPYLITGSDDHTA 211 (915)
Q Consensus 136 ~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i 211 (915)
..... ....|..+.-. ....+..|+.+|..+.- +..+......... ...|+++....+|. +-+++.+|.+
T Consensus 239 n~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~-l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs---LWv~t~~giv 312 (671)
T COG3292 239 NWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTR-LPRQGLQIPLSKMHLGVSTVNSLWLDTDGS---LWVGTYGGIV 312 (671)
T ss_pred ccCCCCcchheeeeecc--cCCCEEEeecccceeEe-cCCCCccccccccCCccccccceeeccCCC---EeeeccCceE
Confidence 22111 22334443333 34567778877754332 2222222222211 23344454444554 7788877776
Q ss_pred EEEE
Q 002502 212 KVWD 215 (915)
Q Consensus 212 ~iwd 215 (915)
++-+
T Consensus 313 ~~~~ 316 (671)
T COG3292 313 RYLT 316 (671)
T ss_pred EEec
Confidence 6644
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.97 E-value=9.1 Score=36.89 Aligned_cols=102 Identities=15% Similarity=0.287 Sum_probs=65.4
Q ss_pred CEEEEEEcCCeEEEEECCC--CceeEEEEecCCCEEEEEEeCCCCEEEEEeC---CC---eEEEE-ECCCC----ceeE-
Q 002502 28 PWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DM---FIRVY-NYNTM----DKVK- 93 (915)
Q Consensus 28 ~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg---~i~vw-d~~~~----~~~~- 93 (915)
..|.++...+.|.+|++.+ .+....|..- +.|..+.++..|++|++--. .. .+|+| |++.. +.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4555556678899999883 3455566644 78999999999999999633 22 66776 33211 1111
Q ss_pred --------------------EEe-cCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCC
Q 002502 94 --------------------VFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 94 --------------------~~~-~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (915)
.++ .-+..+.|++..|-...|++|+.+ .+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEE
Confidence 111 123356788888865567777764 7899987644
No 473
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.91 E-value=0.091 Score=59.52 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=69.9
Q ss_pred hhcccCCCCEEEEEEcC-CCCEEEEEEcCCeEEEEECC--CCceeEEEEe-----cCCCEEEEEEeC---CCCEEEEEeC
Q 002502 9 RKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQ--SQTMAKSFEV-----TELPVRSAKFVA---RKQWVVAGAD 77 (915)
Q Consensus 9 ~~l~~h~~~v~~~~~sp-~~~~la~~~~dg~v~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~---~~~~l~~g~~ 77 (915)
..+++.++.|-.+.|-. +-+.++ -.-|...||++. .|++...+.. -..++.-+.|.| +.-++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34567778888888744 333333 234678899875 3544433332 234455666655 6777888888
Q ss_pred CCeEEEEECCCCceeEEEecCCCCEEEEEE-----------cCCCCEEEEEEcCCeEEEEE
Q 002502 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-----------HPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 78 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~-----------s~~~~~l~~~~~dg~i~iwd 127 (915)
++.|++.++++... ..+.+|...+..++| ||||..++.++.||.++.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 99999888775433 445567776666554 45555555555555555543
No 474
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.81 E-value=0.5 Score=32.03 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCC
Q 002502 16 ERVKSVDLHPSE---PWILASLYSGTVCIWNYQSQ 47 (915)
Q Consensus 16 ~~v~~~~~sp~~---~~la~~~~dg~v~iwd~~~~ 47 (915)
+.|++|.|||.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478999999854 48888888999999999853
No 475
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=12 Score=37.66 Aligned_cols=192 Identities=9% Similarity=0.055 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---eEE
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKV 94 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~~~~~---~~~ 94 (915)
+..+.++ +++...+..+.-++|.|+.+-.....+..-+..=..-.|.-.|++..++.-+.-+.+.|+.+... ...
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 3344454 55666666666799999877544333222111123344555788888887555566778765433 233
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC-CcceEEEEEecCCCCEEEEEECCCcEEEEECC
Q 002502 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (915)
Q Consensus 95 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 173 (915)
.......-..++.| |++-..+..|+-+.+.|+.....+...-.-. ...+.++..++ +..++ .-.+.-+.+-|..
T Consensus 167 ya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-nr~y~--vvy~egvlivd~s 241 (370)
T COG5276 167 YALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-NRAYL--VVYDEGVLIVDVS 241 (370)
T ss_pred eccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-CeeEE--EEcccceEEEecC
Confidence 33333334556665 6677788889999999998763333222211 22567776665 33333 3344557788887
Q ss_pred CCCCceEEecC-CCCeeEE-EEEeCCCcCEEEEEECCCeEEEEECCC
Q 002502 174 SPDPNFTLDAH-QKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQT 218 (915)
Q Consensus 174 ~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (915)
+.+....+... ...+.++ .+.-.++ +......+.-+.+.|..+
T Consensus 242 ~~ssp~~~gsyet~~p~~~s~v~Vs~~--~~Yvadga~gl~~idisn 286 (370)
T COG5276 242 GPSSPTVFGSYETSNPVSISTVPVSGE--YAYVADGAKGLPIIDISN 286 (370)
T ss_pred CCCCceEeeccccCCcccccceecccc--eeeeeccccCceeEeccC
Confidence 77655544321 1222222 2222333 455555555566666654
No 476
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.75 E-value=0.33 Score=53.04 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=23.3
Q ss_pred ccCCHHHHHHHHHHcC---C--hhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002502 651 QLGRLEVAQEIATEVQ---S--ESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~---~--~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
..|++.+|.....+.- . .-.|..||-....+|++-.|++.|.++
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 4566777766654311 1 225555555555555555555555544
No 477
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.71 E-value=1.3 Score=35.38 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002502 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
..+..+|..+...|+++.|+.+|.++-+ +....|+... .++.. ....+.++...|++++|+++|.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~--~~a~~------~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD------IEEQLGDDHP--DTANT------LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH------HHHHTTTHHH--HHHHH------HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHCCCCH--HHHHH------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 3567899999999999999999998643 3444555221 11111 23356677788999999999875
Q ss_pred C
Q 002502 749 S 749 (915)
Q Consensus 749 ~ 749 (915)
+
T Consensus 72 a 72 (78)
T PF13424_consen 72 A 72 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 478
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=5.9 Score=37.55 Aligned_cols=173 Identities=10% Similarity=0.026 Sum_probs=91.5
Q ss_pred CCEEEEEEc--CCeEEEEECCCCceeEEEEecCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCceeEEEecCCCCEE
Q 002502 27 EPWILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (915)
Q Consensus 27 ~~~la~~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 103 (915)
|.++.+.+. ...|++||+.+|+.+.+-+.....+..=....-|+.+. -...+|.-..+|.++.+.+..+.- .+.=+
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcce
Confidence 444444443 45699999999988766553322222211222233333 334678888999998888777653 22334
Q ss_pred EEEEcCCCCEEEEEEcCCeEEEEECCCCceE---EEEeecC-CcceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCce
Q 002502 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC---TQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179 (915)
Q Consensus 104 ~l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 179 (915)
.++ .|+..|+.++...+++.-|.++.... .....+. -..+.-+.|- ++...+-.=.+..|...+..+++...
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 444 35556777766667777776653221 1122111 1123334444 34444433334444444554444332
Q ss_pred EE------------ecCCCCeeEEEEEeCCCcCEEEEE
Q 002502 180 TL------------DAHQKGVNCVDYFTGGDKPYLITG 205 (915)
Q Consensus 180 ~~------------~~~~~~v~~~~~~~~~~~~~l~~~ 205 (915)
.+ ..+..-.+.+++.|..+. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence 22 123445678888887754 56655
No 479
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.32 E-value=1.2 Score=56.63 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=65.3
Q ss_pred HHHHHhCCChhhhhhcccC-ccce---e---eeecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHH
Q 002502 623 ARFLESRGMIEEAIEVATD-PDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGC 690 (915)
Q Consensus 623 ~~~~~~~~~~~~al~~~~~-~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~ 690 (915)
+..+...|..++|+.+... |... + .++.+.|++++|.+..+.. ++...|..||..+...|+++.|+++
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3445667888888776532 2221 1 4567889999999988743 4578999999999999999999999
Q ss_pred HHHcCCcc--------hhHHHHHhcCCHHHHHHHHHH
Q 002502 691 MKQAMDLS--------GLLLLYSSLGDAEGISKLASL 719 (915)
Q Consensus 691 y~~~~d~~--------~l~~l~~~~g~~~~~~~l~~~ 719 (915)
|.++-... .+..++...|+.+.-..+.+.
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99765321 233444455555444433333
No 480
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.25 E-value=2.2 Score=52.35 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=50.0
Q ss_pred ccCCHHHHHHHHHHcC----ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----hhHHHHHhc---CCHHHHHHHHH
Q 002502 651 QLGRLEVAQEIATEVQ----SESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----GLLLLYSSL---GDAEGISKLAS 718 (915)
Q Consensus 651 ~l~~~~~A~~~a~~~~----~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----~l~~l~~~~---g~~~~~~~l~~ 718 (915)
+.|++++|....+++. ....|..+|..++..|+++.|+.+|.++-... -...++... |+.+......+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6777777777765432 23456677777777888888887776654321 111122223 66554444433
Q ss_pred HHHHcCC----chHHHHHHHHcCCHHHHHH
Q 002502 719 LAKEQGK----NNVAFLCLFMLGKLEDCLQ 744 (915)
Q Consensus 719 ~~~~~~~----~~~a~~~~~~~g~~~~a~~ 744 (915)
.+....- ....+.++..+|++++|++
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3332211 1112344555666666665
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.15 E-value=0.51 Score=52.97 Aligned_cols=97 Identities=15% Similarity=0.024 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH-----HcC-CchHHHHHHHHcCCH
Q 002502 666 QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK-----EQG-KNNVAFLCLFMLGKL 739 (915)
Q Consensus 666 ~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~-----~~~-~~~~a~~~~~~~g~~ 739 (915)
.+..+....|.++...|++..|..+|..++.+....-+..+....+ +...|+... ... ..+.+-....++.+.
T Consensus 933 ~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~ 1011 (1243)
T COG5290 933 VDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYLENL 1011 (1243)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHHhCH
Confidence 3445566778888999999999999999999988877666655433 443333321 112 233344456678999
Q ss_pred HHHHHHHHHCCCchHHHHHHHhcC
Q 002502 740 EDCLQLLVESNRIPEAALMARSYL 763 (915)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~~ar~~~ 763 (915)
.+|+.++++..++.+|+..|+.-+
T Consensus 1012 ~eava~~ckgs~y~ea~~~a~~s~ 1035 (1243)
T COG5290 1012 YEAVAMDCKGSEYREAFCEAMVSR 1035 (1243)
T ss_pred HHHHHHHcccccchHHHHHHHHhh
Confidence 999999999999999998887643
No 482
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=92.07 E-value=1.1 Score=54.74 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHc----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002502 653 GRLEVAQEIATEV----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 653 ~~~~~A~~~a~~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
|++++|....++. ++...|..+|..+...|+++.|+.+|.++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666665554421 23455666666666666666666666554
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=91.98 E-value=33 Score=40.94 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=47.6
Q ss_pred CCCEEEEEEcCCC------CEEEEEEcCCeEEEEECCCCceeEEEEe--cCCCEEEEEEeC---CC------CEEEEEeC
Q 002502 15 SERVKSVDLHPSE------PWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVA---RK------QWVVAGAD 77 (915)
Q Consensus 15 ~~~v~~~~~sp~~------~~la~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~---~~------~~l~~g~~ 77 (915)
+..|.|+++.++. ++++.++.|+.++++.+.....+..+.. -..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568899998876 4799999999999999887766665543 344455555433 33 24567777
Q ss_pred CCeEEEE
Q 002502 78 DMFIRVY 84 (915)
Q Consensus 78 dg~i~vw 84 (915)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
No 484
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.91 E-value=1.8 Score=44.92 Aligned_cols=65 Identities=25% Similarity=0.241 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHc-CChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002502 670 KWKQLGELAMST-GKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 670 ~w~~la~~al~~-~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
....+|+.+... ++++.|.++|.++- -+|...|..... .+. ...+..++..+|+|++|+++|.+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~------~~y~~e~~~~~a---~~~------~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAA------ELYEQEGSPHSA---AEC------LLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHH------HHHHHTT-HHHH---HHH------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHCCChhhH---HHH------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566666665 66666666665542 233333321111 111 12244455566677777777665
Q ss_pred C
Q 002502 749 S 749 (915)
Q Consensus 749 ~ 749 (915)
.
T Consensus 181 ~ 181 (282)
T PF14938_consen 181 V 181 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 485
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.89 E-value=18 Score=37.86 Aligned_cols=230 Identities=12% Similarity=0.081 Sum_probs=114.1
Q ss_pred CCEEEEEEcCCeEEEEECCC--CceeEEEEecCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCce------------
Q 002502 27 EPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK------------ 91 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~~~~~------------ 91 (915)
+++|+.|+.+|. .+.+... +...+.+ +..+|+++...+.-+.|++-+. ...++++++.....
T Consensus 13 ~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGL-YVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCce-EEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 368999999984 4455554 2333333 4568999999998887766543 44699999843221
Q ss_pred ---eEEEecCCCCEEEEEEcCCC-CEEEEEEcCCeEEEEECCCCceEEEEee-------cCCcceEEEEEecC-CCCEEE
Q 002502 92 ---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK-DTNTFA 159 (915)
Q Consensus 92 ---~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~p~-~~~~l~ 159 (915)
....-.|........+.... ..++++....+|.++.+.........+. ....++..+..++. ....++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 01111333322223332211 2334445556777776543211111111 11123333333331 245777
Q ss_pred EEECCCcEEEEECCC--CCCce-----EEecCC-CCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCC-cEE--EEecCC
Q 002502 160 SASLDRTIKIWNLGS--PDPNF-----TLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCV--QTLEGH 228 (915)
Q Consensus 160 ~~~~dg~i~i~d~~~--~~~~~-----~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~~~ 228 (915)
.|+..+...++++.. ..... ...... .++..... +++ -++.+.++. ..+.|.. | +.. ..+. -
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~---e~Llc~~~~-~v~Vn~~-G~~~~r~~~l~-w 242 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD---EFLLCYDEF-GVFVNLY-GKRRSRNPILH-W 242 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC---eEEEEECcE-EEEEeCC-CCccccceEEE-c
Confidence 777643344444432 11100 011111 33333333 232 244444443 4444544 3 221 1222 2
Q ss_pred ccCeEEEEEeCCCCEEEEEEcCCeEEEEeCCCceeeeeecc
Q 002502 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (915)
Q Consensus 229 ~~~v~~v~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (915)
.....++++.. ++|++-+.+ .|.++++.++..++++..
T Consensus 243 ~~~p~~~~~~~--pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYHS--PYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEEC--CEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 34456677764 577766644 599999999998887764
No 486
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.81 E-value=3 Score=47.59 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=71.3
Q ss_pred CEEEEEEcCCCCEEEEEEcCCeEEEEECCCCceeEEEE-ecCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECC------
Q 002502 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFV--ARKQWVVAGADDMFIRVYNYN------ 87 (915)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~~g~~dg~i~vwd~~------ 87 (915)
.++-+.-|.-++..++-+....+.|||...+.....-. ...+.|..+.|. |+|+.+++.+-.+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34445555555544444445679999998876443332 347789999995 588888888888999998531
Q ss_pred ---CCceeEEE--ecCC-CCEEEEEEcCCCCEEEEEEcCCeEEEEEC
Q 002502 88 ---TMDKVKVF--EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (915)
Q Consensus 88 ---~~~~~~~~--~~~~-~~i~~l~~s~~~~~l~~~~~dg~i~iwd~ 128 (915)
+...++.+ ..|+ .+|....|.++|. +++|+. ..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSG-NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeC-CEEEEECC
Confidence 11223332 2333 5799999999985 444443 46777763
No 487
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.35 E-value=0.43 Score=38.86 Aligned_cols=75 Identities=21% Similarity=0.309 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHc----C---ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002502 652 LGRLEVAQEIATEV----Q---SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (915)
Q Consensus 652 l~~~~~A~~~a~~~----~---~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~ 724 (915)
.|+++.|..+..++ + +...|-.+|..+.+.|+++.|...+.+ ..... . -....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~-------~~~~~---- 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------S-------NPDIH---- 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------C-------HHHHH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------C-------CHHHH----
Confidence 35677777766532 2 345788899999999999999777766 11100 0 00111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002502 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+ +.+.|++.+|++++|++.|.+
T Consensus 62 -~-l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 -Y-LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -H-HHHHHHHHTT-HHHHHHHHHH
T ss_pred -H-HHHHHHHHhCCHHHHHHHHhc
Confidence 2 236788899999999999875
No 488
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.32 E-value=2.5 Score=40.84 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHcCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc----hhHH----HHHhcCCHHHHHHHHHHHHH--
Q 002502 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS----GLLL----LYSSLGDAEGISKLASLAKE-- 722 (915)
Q Consensus 653 ~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~----~l~~----l~~~~g~~~~~~~l~~~~~~-- 722 (915)
.++++|++... +....|-.+|..+...|+.+.|.+.|.++-... .++. ..|..|.++.-+..-+.|..
T Consensus 56 ~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 56 KNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 34555555432 346689999999999999999999999874221 1111 23445666665555555533
Q ss_pred -----cCCchHHHHHHHHcCCHHHHHHHHHHC-----CCchHHHHHHHhcC
Q 002502 723 -----QGKNNVAFLCLFMLGKLEDCLQLLVES-----NRIPEAALMARSYL 763 (915)
Q Consensus 723 -----~~~~~~a~~~~~~~g~~~~a~~l~~~~-----~~~~~A~~~ar~~~ 763 (915)
.+-+.-++.|++..|+++.|.++|.++ +.+.-.++|++.+.
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 233456789999999999999998765 44455557777653
No 489
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.29 E-value=1.3 Score=49.07 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=113.4
Q ss_pred cCCCCcchHHHH----HHHHHhCCChhhhhhccc-----Cccc---eeeeecccCCHHHHHHHHHHc-CC----------
Q 002502 611 LPSIPKEHHNSV----ARFLESRGMIEEAIEVAT-----DPDY---RFELAIQLGRLEVAQEIATEV-QS---------- 667 (915)
Q Consensus 611 l~~i~~~~~~~~----~~~~~~~~~~~~al~~~~-----~~~~---~f~~~l~l~~~~~A~~~a~~~-~~---------- 667 (915)
|..+|..+|.+| .+|++..+.++-++.+.+ .|.. ..+.....++|++|-+-...+ ++
T Consensus 129 LraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS 208 (835)
T KOG2047|consen 129 LRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS 208 (835)
T ss_pred HHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc
Confidence 444677777544 578888888887776532 2322 236666778888776544221 11
Q ss_pred ---------------------------------------hhHHHHHHHHHHHcCChhhHHHHHHHc-------CCcchhH
Q 002502 668 ---------------------------------------ESKWKQLGELAMSTGKLEMAEGCMKQA-------MDLSGLL 701 (915)
Q Consensus 668 ---------------------------------------~~~w~~la~~al~~~~~~~A~~~y~~~-------~d~~~l~ 701 (915)
..+|-.||+++...|.|+.|...|..+ +|+..+.
T Consensus 209 n~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~if 288 (835)
T KOG2047|consen 209 NHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIF 288 (835)
T ss_pred hhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHH
Confidence 239999999999999999999999866 4666555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-----cCCchHHHHHHHH----cCCHHHHHHHHHHCCCchHHHHHHHhc-CCChHHHHH
Q 002502 702 LLYSSLGDAEGISKLASLAKE-----QGKNNVAFLCLFM----LGKLEDCLQLLVESNRIPEAALMARSY-LPSKVSEIV 771 (915)
Q Consensus 702 ~l~~~~g~~~~~~~l~~~~~~-----~~~~~~a~~~~~~----~g~~~~a~~l~~~~~~~~~A~~~ar~~-~~~~~~~~~ 771 (915)
-.|..-.. .++....+++.. +....+-.+.+.+ .+..--.=+.+++.+--.---=+.|.- ......+.+
T Consensus 289 d~Ya~FEE-~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i 367 (835)
T KOG2047|consen 289 DAYAQFEE-SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQI 367 (835)
T ss_pred HHHHHHHH-HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHH
Confidence 55544221 112222222211 1111222222111 011111111222211100000112211 124456667
Q ss_pred HHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCC
Q 002502 772 AIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPA 822 (915)
Q Consensus 772 ~~w~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 822 (915)
.-+.+++..++++.| ++..-.|+-.|++.-+.-+.+..|+...+.|
T Consensus 368 ~tyteAv~~vdP~ka-----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKA-----VGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHHccCcccC-----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 778888888887765 6676777888888877777777776665555
No 490
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.27 E-value=2.1 Score=39.10 Aligned_cols=80 Identities=18% Similarity=0.041 Sum_probs=50.1
Q ss_pred eecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHH
Q 002502 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKE 722 (915)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~ 722 (915)
.+.+.|++++|...++.. .+...|..+|..+...|+++.|..+|.++-.. ..++++..
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~--------- 95 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPV--------- 95 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHH---------
Confidence 345778888887776542 34667778888888888888887777765322 12222211
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHH
Q 002502 723 QGKNNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 723 ~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
...+.++..+|++++|++.|.+
T Consensus 96 ----~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 96 ----YQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHH
Confidence 2233456667888888877763
No 491
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.13 E-value=0.3 Score=37.35 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=37.5
Q ss_pred ecccCCHHHHHHHHHHc-----CChhHHHHHHHHHHHcCChhhHHHHHHHc
Q 002502 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (915)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (915)
+++.|++++|.+..+.+ .+...|..+|..+...|+++.|...|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36778888888888754 34779999999999999999999888875
No 492
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.98 E-value=8.8 Score=44.36 Aligned_cols=144 Identities=13% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCEEEEEEcCCeEEEEECCCCceeE------EEEe----------------cCCCEEEEEEeC--CCCEEEEEeCCCeEE
Q 002502 27 EPWILASLYSGTVCIWNYQSQTMAK------SFEV----------------TELPVRSAKFVA--RKQWVVAGADDMFIR 82 (915)
Q Consensus 27 ~~~la~~~~dg~v~iwd~~~~~~~~------~~~~----------------~~~~v~~~~~s~--~~~~l~~g~~dg~i~ 82 (915)
+++|+++. .+.|.||+...-.... .+.. ....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 7899999976432211 1100 111244443332 456788999999999
Q ss_pred EEECCC-------C----c---------eeEEEecCCCCEEEEEEc--CCCCEEEEEEcCCeEEEEECCCC--ceEEEEe
Q 002502 83 VYNYNT-------M----D---------KVKVFEAHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWEKG--WMCTQIF 138 (915)
Q Consensus 83 vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 138 (915)
+|.+++ . + +-..+. -....++++++ ...++||+++....|.||-.... +.....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 997521 0 0 011112 23468999998 77888999998888888865432 1111111
Q ss_pred ecCCcceEEEEEecCC--CC---EEEEEECCCcEEEEEC
Q 002502 139 EGHSHYVMQVTFNPKD--TN---TFASASLDRTIKIWNL 172 (915)
Q Consensus 139 ~~~~~~i~~~~~~p~~--~~---~l~~~~~dg~i~i~d~ 172 (915)
..+.+.|-+++|.+.+ +. .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2356678899998733 22 7888899999999887
No 493
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.97 E-value=0.71 Score=48.07 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHHHcCCc-----------chhHHHHHhcCCHHHHHHHHHHHHHcC------------
Q 002502 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDL-----------SGLLLLYSSLGDAEGISKLASLAKEQG------------ 724 (915)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~-----------~~l~~l~~~~g~~~~~~~l~~~~~~~~------------ 724 (915)
....+.||+.++..|+++.|.+||.|++|| -.++++....||...|......|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 346788999999999999999999999887 356677777888777766555554431
Q ss_pred -CchHHHHHHHHcCCHHHHHHHHHHCC
Q 002502 725 -KNNVAFLCLFMLGKLEDCLQLLVESN 750 (915)
Q Consensus 725 -~~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (915)
-...|+.+.+.+++|+.|++.|+...
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12356677777899999999998654
No 494
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.84 E-value=0.42 Score=37.05 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcC-CHHHHHHH
Q 002502 667 SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLG-KLEDCLQL 745 (915)
Q Consensus 667 ~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g-~~~~a~~l 745 (915)
+...|..+|..+...++++.|+.+|.++-+++. .+... +..-+.+++.+| ++++|++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~-------------~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEA-------------YYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHH-------------HHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHH-------------HHHHHHHHHHhCccHHHHHHH
Confidence 457899999999999999999999998644421 11111 122334566677 67888777
Q ss_pred HHH
Q 002502 746 LVE 748 (915)
Q Consensus 746 ~~~ 748 (915)
|.+
T Consensus 61 ~~~ 63 (69)
T PF13414_consen 61 FEK 63 (69)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 495
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.77 E-value=1.8 Score=43.17 Aligned_cols=98 Identities=23% Similarity=0.248 Sum_probs=57.8
Q ss_pred ccCCHHHHHHHHHH-----cCChhHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHH
Q 002502 651 QLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLA 717 (915)
Q Consensus 651 ~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~l~ 717 (915)
..|++++|.+...+ -.+...|..+|..+...|+++.|.++|.++-... .+..+|...|+.+......
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34445555544432 2346688899999999999999999998775332 2334555666665544444
Q ss_pred HHHHHcCC-------chHHHHHHHHcCCHHHHHHHHHH
Q 002502 718 SLAKEQGK-------NNVAFLCLFMLGKLEDCLQLLVE 748 (915)
Q Consensus 718 ~~~~~~~~-------~~~a~~~~~~~g~~~~a~~l~~~ 748 (915)
+.+..... ....+.++...|++++|+++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44432211 11123445556666666666654
No 496
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.69 E-value=11 Score=33.18 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCEEEEEEcCCeEEEEECC--------CCceeEEEEecCCCEEEEEEeC----CCCEEEEEeCCCeEEEEE
Q 002502 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ--------SQTMAKSFEVTELPVRSAKFVA----RKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 18 v~~~~~sp~~~~la~~~~dg~v~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~g~~dg~i~vwd 85 (915)
|..-.|....+.|++++..|.|.|++.. ....+..+. -...|++++-.+ ++.-++.-+....|..||
T Consensus 1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEE
Q ss_pred CCCCceeEEEecCCCCEEEEEEcCCCCE---EEEEEcCCeEEEEECCCCceEEEEeec
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPY---VLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~---l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (915)
+....-+..-..+ +.|.++.+-.-+.. ++..+.+..|.-+|.+.. ...-+..+
T Consensus 80 V~~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~-e~fWtVtg 135 (136)
T PF14781_consen 80 VENNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN-EIFWTVTG 135 (136)
T ss_pred cccCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc-EEEEEecc
No 497
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.67 E-value=17 Score=35.15 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=38.9
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEeCC--CceeeeeeccCCccEEEEEEecCCCeEEEEec
Q 002502 234 AVCFHPELPIIITGSEDGTVRIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (915)
Q Consensus 234 ~v~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~ 291 (915)
.++-.+. ..|+.+...+.|.+|++. ..++..++..- +.|..+.++..|++|++--.
T Consensus 22 ~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 22 AVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred eeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 3444442 344444567789999988 33456666655 88999999999999998433
No 498
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.63 E-value=1.3 Score=30.09 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCEEEEEEcCCC---CEEEEEEcCCeEEEEECCCC
Q 002502 100 DYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKG 131 (915)
Q Consensus 100 ~~i~~l~~s~~~---~~l~~~~~dg~i~iwd~~~~ 131 (915)
+.|+++.|||.. .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 47888877899999999964
No 499
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.50 E-value=0.35 Score=31.76 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 002502 671 WKQLGELAMSTGKLEMAEGCMKQ 693 (915)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~ 693 (915)
|..||..+...|+++.|++||.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 67899999999999999999998
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.41 E-value=5.6 Score=43.02 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=56.9
Q ss_pred ceEEEEEecCCCCEEEEEECCCcEEEEECCCCCCceEEecCCCCeeEEEEEeCCCcCEEEEEECCCeEEEEECCCCcEEE
Q 002502 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (915)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (915)
.|..+..++ .|..++..+.+|.+.++=.+...+...+...+..|+|-.+.-+.. +++.+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~---~ftss----------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER---FFTSS----------------- 163 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce---eeccC-----------------
Confidence 356677777 778888888888766654333333334443444444444332221 22111
Q ss_pred EecCCccCeEEEEEeCCC---CEEEEEEcCCeEEEEeCCCceeee
Q 002502 224 TLEGHTHNVSAVCFHPEL---PIIITGSEDGTVRIWHATTYRLEN 265 (915)
Q Consensus 224 ~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~ 265 (915)
..-.+..++|+|+. ..+..-+.|+.||+||+...+.+.
T Consensus 164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 11124567888875 567777789999999988766553
Done!