Query 002502
Match_columns 915
No_of_seqs 1070 out of 4658
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 17:10:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002502.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1220-1224//hhsearch_pdb/002502hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 821.1 93.7 791 3-797 1-813 (814)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 431.2 56.9 549 9-588 609-1247(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 420.4 57.8 428 12-490 15-518 (611)
4 3mkq_A Coatomer beta'-subunit; 1.0 1 1 416.3 56.0 691 48-817 4-804 (814)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 415.7 71.4 533 7-586 8-576 (577)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 411.0 46.2 500 6-547 648-1245(1249)
7 1nr0_A Actin interacting prote 1.0 1 1 408.8 58.4 456 6-490 50-607 (611)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 396.2 61.0 458 6-490 48-535 (577)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 369.1 61.7 467 11-490 13-657 (902)
10 1pgu_A Actin interacting prote 1.0 1 1 366.9 56.7 540 11-590 14-614 (615)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=821.11 Aligned_cols=791 Identities=47% Similarity=0.878 Sum_probs=719.4
Q ss_pred CCHHHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEE
Q ss_conf 81155444135888789999958999799998689099997799944589880498879999957999999995897699
Q 002502 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (915)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~ 82 (915)
+++++.+.+.+|++.|++++|||++++|++++.+|.|+|||+.++..+..+..|..+|++++|+|++++|++++.||.|+
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 99650004505898568999889999899994799899998999916778733899688999968999899992899499
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 99879992669970589978999993999999999759919999889990589986159843699999129998999997
Q 002502 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (915)
Q Consensus 83 iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (915)
+|++.+++.+..+..|.+.|++++|+|+++++++++.||.|++|++.++......+.+|...+.+++|+|.+++.+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 99899995879981689978999995899989999289989999899995487998379986889999769999999994
Q ss_pred CCCCEEEEECCCCCCCEEEECCC-CCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf 89959999889999716991689-88339999767995899999779909999789995799951786685999992899
Q 002502 163 LDRTIKIWNLGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL 241 (915)
Q Consensus 163 ~dg~i~i~d~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~ 241 (915)
.||.|++||+.++.....+..+. ..+.+++|+|.+++.++++++.+|.|++||+++++++..+.+|...|.+++|+|++
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred CCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCC
T ss_conf 88949999899996106983588897799999977999899999389979999999991889984788887899985999
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCC--EEEEEECCCEEEEECCCCCCEEEECCCCCEEEEEE
Q ss_conf 9999998588099996897504545204774489999941998--69999628919996178854168728995999960
Q 002502 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR--RIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKH 319 (915)
Q Consensus 242 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 319 (915)
+++++++.||.|++||+.+++....+..+...+++++|+|++. +++++++++.+.++.....+...+.+++..++...
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEEECCCCCCEEEECCCCCEEEECC
T ss_conf 99999908996999989999477784068886799999249995099999079879997679974167779987899776
Q ss_pred CCE-----EEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCEEE
Q ss_conf 615-----999965415410105896210012204975668815897889989999939909999830443457662469
Q 002502 320 NEI-----QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALE 394 (915)
Q Consensus 320 ~~i-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~ 394 (915)
... ....+. ..+....+.........+..+...+..++|+|+|+++++++++.+.+|+...+.....+.+.+
T Consensus 321 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~ 397 (814)
T 3mkq_A 321 KNAAASDIFTAVIR---GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQD 397 (814)
T ss_dssp TTSCTTCEEEEECC---SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSE
T ss_pred CCCCCEEEEEEECC---CCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEE
T ss_conf 36641124665304---655555676201465117887657740689999998999429889999874544567995479
Q ss_pred EEEECCCCEEEEEC-CCEEEEECCCCCEEE--EEECCCCCCEEECCCEEEEEECCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 99921973999946-974998225741001--241576311242385899964891999863578188987612028999
Q 002502 395 FVWSSDGEYAVRES-SSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYW 471 (915)
Q Consensus 395 ~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~i~~i~~ 471 (915)
++|+|+++++++++ ++.+++|+ .+.++. .....|+|++++++.++....++.|++||+.+++++..+......+.|
T Consensus 398 ~~~spdg~~la~~~~~g~v~l~~-~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~v~~ 476 (814)
T 3mkq_A 398 FVWGPDSNSYALIDETGQIKYYK-NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAKDVIW 476 (814)
T ss_dssp EEECTTSSCEEEECTTCCEEEEE-TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEEEEEE
T ss_pred EEEECCCCEEEEEECCCCEEEEE-CCCCCCCEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 99947998599996898399997-77775243973786755236546999966998999998769599997358887999
Q ss_pred CCCCCEEEEE------ECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCEEEEECCCCEEE
Q ss_conf 1899999999------4981999991388899766279998844534423686765566775689437899973698599
Q 002502 472 ADSGDLVAIA------SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLN 545 (915)
Q Consensus 472 s~dg~~la~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~ 545 (915)
+++|++|++. +++..+++|++.+.....+..+...+++|.+..|..+.++...+.+++|++++|+|.+..+++.
T Consensus 477 s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~ 556 (814)
T 3mkq_A 477 SDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLN 556 (814)
T ss_dssp CTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEE
T ss_pred CCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEE
T ss_conf 69999999998676667742899995468866666416876212502221364576427876598088899976887089
Q ss_pred EEECCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCHHHHHH-HCCCCC-CCHHHHHH
Q ss_conf 9989978699930343589999740889999916883589993502787879998059888963-569999-41178899
Q 002502 546 YCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE-ILPSIP-KEHHNSVA 623 (915)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~-~l~~i~-~~~~~~~~ 623 (915)
|+.+++...+.+++.+++++++.+++++++++|+++++..|.++...++|+.++.+++++.|.. +++.|+ ...+.+++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~ 636 (814)
T 3mkq_A 557 YFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIA 636 (814)
T ss_dssp EEETTEEEEEEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHH
T ss_pred EEECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99698668999989667999998329999999288887999989099999699870799999988874288467899999
Q ss_pred HHHHHCCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99993998365542145866302300013998999999998099568999999999749911589999881895514778
Q 002502 624 RFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLL 703 (915)
Q Consensus 624 ~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~a~~~~~~~~A~~~y~~~~d~~~l~~l 703 (915)
+|++++++++.|+++.+++.++|++++++|+|++|+++|+.++++.+|++||++|++.++++.|++||.+++|++++.+|
T Consensus 637 ~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHCCCHHHHEECCCCCCHHEEHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 99986898689605278931425021450999999999986176768999999999849989999999870271355899
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHC
Q ss_conf 773299888999999999929923988999972998899999998799257899888509970--789999999854200
Q 002502 704 YSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSK--VSEIVAIWRKDLQKV 781 (915)
Q Consensus 704 ~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ar~~~~~~--~~~~~~~w~~~L~~~ 781 (915)
|...++.+++.++++++...|+++.|+++|+++|++++|+++|++++||++|+++|++|.|++ ++.++++|+++|...
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 87729999999999999985866799999988099999999999869947899999870997578899999999998761
Q ss_pred CH-HHHHHCCCCCCCCC
Q ss_conf 91-43421189934777
Q 002502 782 NP-KAAESLADPEEYSN 797 (915)
Q Consensus 782 ~~-~~a~~l~~~~~~~~ 797 (915)
++ ++|++|++|+++|.
T Consensus 797 ~~~~~a~~l~~~~~~~~ 813 (814)
T 3mkq_A 797 GKNTVSERVCGAEGLPG 813 (814)
T ss_dssp TCHHHHTTBCCGGGCC-
T ss_pred CCHHHHHHHCCCCCCCC
T ss_conf 64668986379112799
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=431.17 Aligned_cols=549 Identities=13% Similarity=0.190 Sum_probs=411.1
Q ss_pred HHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
Q ss_conf 44135888789999958999799998689099997799944589880498879999957999999995897699998799
Q 002502 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (915)
Q Consensus 9 ~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd~~~ 88 (915)
..+.+|.+.|.+++|+|+++++++++.||.|++||..+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 926699705899789999939--999999997599199998899905899861598436999991299989999978995
Q 002502 89 MDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 89 ~~~~~~~~~~~~~i~~i~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
++.+..+..|...|.++.|+| ++.++++++.|+.|++||+.++ .+...+.+|...|.+++|+| +++.+++++.||.
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGT 766 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECS-STTEEEEEESSSE
T ss_pred CCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCC-CHHHEECCCCCCEEEEEEEC-CCCEEEEEECCCE
T ss_conf 936899958997379999840899659999808970999989996-34220127779788999925-9998999978985
Q ss_pred EEEEECCCCCCCEEEEC-------------CCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCE
Q ss_conf 99998899997169916-------------8988339999767995899999779909999789995799951-786685
Q 002502 167 IKIWNLGSPDPNFTLDA-------------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNV 232 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i 232 (915)
|++||+.++.....+.. ....+.+++|+|++. ++++++ ++.+.+|+..++.....+. +|...+
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS--EEEEEE-TTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC--EEEEEC-CCCEEEEEECCCCCEEEECCCCCCCE
T ss_conf 999968888655302023210246776445650179999978998--899975-89599999568972357747877760
Q ss_pred EEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCC---------
Q ss_conf 99999289999999985880999968975045452047744899999419986999962891999617885---------
Q 002502 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE--------- 303 (915)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i~~~~~~--------- 303 (915)
.+++|+|++.++++++.+|.|++|++.++.....+..|...|.+++|+|+++.+++++.||.+++|.....
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 79998278888999947986999986789565322787665689999899998999958972898874665201021133
Q ss_pred -----------------------------------------CEEEECCCCCEEEEEECCEEEEEEEECCCCEECCCCCEE
Q ss_conf -----------------------------------------416872899599996061599996541541010589621
Q 002502 304 -----------------------------------------PVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (915)
Q Consensus 304 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~ 342 (915)
...++.+++..+......- ....|+..++...
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g-------~i~i~d~~~~~~~ 996 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG-------AIKIIELPNNRVF 996 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS-------CCEEEETTTTSCE
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCC-------CEEEEECCCCCEE
T ss_conf 103689759986899813776248984476508972567278999958997799986999-------8899975787234
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----CCCCCCEEEEEEECCCCEEEEECCCEEEEECC
Q ss_conf 001220497566881589788998999993-9909999830443----45766246999921973999946974998225
Q 002502 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NRSFGSALEFVWSSDGEYAVRESSSKIKIFSK 417 (915)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~ 417 (915)
..+..+...+.+++|+|+|+++++++ ++.+.+|+..... ..+...+.++.|++++.+++...++.+++|+.
T Consensus 997 ----~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~ 1072 (1249)
T 3sfz_A 997 ----SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV 1072 (1249)
T ss_dssp ----EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET
T ss_pred ----EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEC
T ss_conf ----4303677716899998999989998699879999879996689852787389999908995899978896899888
Q ss_pred CCCEEE-EE--------ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEEE---CCCCEEEECCCCCEEEEEECC
Q ss_conf 741001-24--------157631124238589996489-19998635781889876---120289991899999999498
Q 002502 418 NFQEKR-SV--------RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID---VTVKNLYWADSGDLVAIASDT 484 (915)
Q Consensus 418 ~~~~~~-~~--------~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~---~~i~~i~~s~dg~~la~~~~~ 484 (915)
...... .+ ...|+|+ +.+|++++.+ .|++||+.+++++..+. ..|.++.|+|+|.++++++.+
T Consensus 1073 ~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1073 ITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp TTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CCCCEEEEECCCCCCEEEEEECCC----CCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
T ss_conf 988655887466884899999899----9989998499948998789850012550687767999997999989998289
Q ss_pred EEE-EEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEECCCCEEEEEEC--CE-EEEEEEC
Q ss_conf 199-999138889976627999884453442368676556677568943--78999736985999989--97-8699930
Q 002502 485 SFY-ILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYCVG--GE-VTTMFHL 558 (915)
Q Consensus 485 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~~~--~~-~~~~~~~ 558 (915)
+.+ +|+... +.....................+.+.+|.. .+++.. . +.+..+.. +. ...+...
T Consensus 1149 g~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-~-g~v~vwd~~~g~~~~~~~~~ 1217 (1249)
T 3sfz_A 1149 GEIRIWNVSD---------GQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-G-GYLKWWNVATGDSSQTFYTN 1217 (1249)
T ss_dssp SCCCEEESSS---------SCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-S-SSEEEBCSSSCBCCCCCCCS
T ss_pred CEEEEEECCC---------CCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEC-C-CEEEEEECCCCCEEEEEECC
T ss_conf 9799998899---------94578851444442102567428999997899989977-9-85999898889500464004
Q ss_pred CCCEEEEEEEEECCEEEEEECCCCEEEEEE
Q ss_conf 343589999740889999916883589993
Q 002502 559 DRPMYLLGYLASQSRVYLIDKEFNVMGYTL 588 (915)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l 588 (915)
..+...+.+.+.+..++..+.++.++.|.+
T Consensus 1218 ~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1218 GTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp SCCCCCCEECSSSCCEEEECTTCCEEEECC
T ss_pred CCCCCEEEECCCCCEEEEECCCCEEEEEEE
T ss_conf 775327999789877999668817999764
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=420.43 Aligned_cols=428 Identities=16% Similarity=0.182 Sum_probs=275.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC-
Q ss_conf 3588878999995899979999868909999779994458988049887999995799999999589769999879992-
Q 002502 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD- 90 (915)
Q Consensus 12 ~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd~~~~~- 90 (915)
..+.+.+.+++|+|+|++|+++. ++.|++|++.++.....+.+|...|++++|+|+|++|++|+.|+.|++||+.+++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
T ss_conf 74068236976679999799679-99799945787242737658998659999999996899994899789948989841
Q ss_pred -EEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf -669970589978999993999999999759----919999889990589986159843699999129998999997899
Q 002502 91 -KVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 91 -~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
....+..|.+.|.+++|+|++++|++++.+ +.|++||. + .....+.+|...|.+++|+|.....+++++.|+
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEC--C-CCCCEECCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 5667622557844899989999979999899773669999638--9-976325478898369998899982999992898
Q ss_pred CEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-------CCCCCEEEEEEE
Q ss_conf 5999988999971699168988339999767995899999779909999789995799951-------786685999992
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------GHTHNVSAVCFH 238 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~i~~~ 238 (915)
+|++||....+....+.+|...|.+++|+|++. ++++++.|+.|++||..+++++..+. +|...|.+++|+
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~--~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS--LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 099997999757665200257169999979999--899998999199988999828665136643235667878999997
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEEEC-------------------------------------------CCCCCEE
Q ss_conf 899999999858809999689750454520-------------------------------------------4774489
Q 002502 239 PELPIIITGSEDGTVRIWHATTYRLENTLN-------------------------------------------YGLERVW 275 (915)
Q Consensus 239 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------------------------~~~~~v~ 275 (915)
|++++|++++.|+.|++||+.+++....+. .|...|+
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEE
T ss_conf 99999999908980999968887013440478876640689997388799995899689996889974469837888889
Q ss_pred EEEEECCCCEEEEEECCCEEEEECCCCCCEEEECCCCCEEEEEECCEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCC
Q ss_conf 99994199869999628919996178854168728995999960615999965415410105896210012204975668
Q 002502 276 AIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (915)
Q Consensus 276 ~i~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 355 (915)
+++|+|++++|++++.||.+++|... ++...... ...+...
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~------------------------------------~~~~~~~~---~~~h~~~ 369 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDIS------------------------------------TGISNRVF---PDVHATM 369 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT------------------------------------TCCEEECS---SCSCSSC
T ss_pred EEEEECCCCEEEEEECCCCEEEEECC------------------------------------CCCEEEEC---CCCCCCE
T ss_conf 99991899989999589849999788------------------------------------79256321---6677650
Q ss_pred CCEEEECCCCCEEEEECCCCEEEEEEECCCC--------CCCCCEEEEEEECCCCEEEEECCCEEEEECCCCCEEEE---
Q ss_conf 8158978899899999399099998304434--------57662469999219739999469749982257410012---
Q 002502 356 PQSLKHNPNGRFVVVCGDGEYIIYTALAWRN--------RSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRS--- 424 (915)
Q Consensus 356 ~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~~~~~~~~--- 424 (915)
+..++|++++.++.++.++.+.+|+...... ...+....++++++++.++...++.+.+|+.. . ...
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~-~-~~~~~~ 447 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-K-LTEVPI 447 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-E-EEEEEC
T ss_pred EEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEECC-C-EEEEEC
T ss_conf 78999878996999984896689546885435652120014899707998079969999967639998489-4-346406
Q ss_pred ----EECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEE--EE--EECCCCEEEECCCCCEEEEEECCEEEEEE
Q ss_conf ----4157631124238589996489-1999863578188--98--76120289991899999999498199999
Q 002502 425 ----VRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLI--RR--IDVTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 425 ----~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i--~~--~~~~i~~i~~s~dg~~la~~~~~~~~~~~ 490 (915)
....|+|+ |++|++++.| +|++||+.++... .. +...|.++.|+|+|++|++++.++.+.+|
T Consensus 448 ~~~v~~va~spd----g~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 448 SYNSSCVALSND----KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp SSCEEEEEECTT----SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEECC----CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEE
T ss_conf 889549999289----98999968997399999459922241015778860799998999989999489989998
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=416.32 Aligned_cols=691 Identities=17% Similarity=0.220 Sum_probs=434.2
Q ss_pred CEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 44589880498879999957999999995897699998799926699705899789999939999999997599199998
Q 002502 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (915)
Q Consensus 48 ~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd 127 (915)
...+.+.+|...|.+++|+|++++|++++.+|.|++|++.+++.+..+..|...|++++|+|++++|++++.||.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred CCCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 50004505898568999889999899994799899998999916778733899688999968999899992899499998
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC-CCCEEEECCCCCEEEEEEEE-CCCCCEEEEE
Q ss_conf 899905899861598436999991299989999978995999988999-97169916898833999976-7995899999
Q 002502 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFT-GGDKPYLITG 205 (915)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~~~l~~~ 205 (915)
+.++ .....+.+|...|.+++|+| ++..+++++.||.|++|++.++ .....+..|...+.+++|+| ++. +++++
T Consensus 84 ~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~ 159 (814)
T 3mkq_A 84 YNTG-EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS--TFASG 159 (814)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE--EEEEE
T ss_pred CCCC-CEEEEEECCCCCEEEEEEEC-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEE
T ss_conf 9999-58799816899789999958-99989999289989999899995487998379986889999769999--99999
Q ss_pred ECCCEEEEEECCCCCEEEEECCCC-CCEEEEEEEC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 779909999789995799951786-6859999928--9999999985880999968975045452047744899999419
Q 002502 206 SDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHP--ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (915)
Q Consensus 206 ~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~i~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~ 282 (915)
+.||.|++||+.++.....+..+. ..+.+++|+| +++++++++.||.|++||+.+++....+..|...+.+++|+|+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred ECCCEEEEEECCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCC
T ss_conf 48894999989999610698358889779999997799989999938997999999999188998478888789998599
Q ss_pred CCEEEEEECCCEEEEECCCCCCEE-EE------------CCCCC--EEEE-EECCEEEEEEEECCCCEECCCCCEEEEEE
Q ss_conf 986999962891999617885416-87------------28995--9999-60615999965415410105896210012
Q 002502 283 SRRIVIGYDEGTIMVKIGREEPVA-SM------------DNSGK--IIWA-KHNEIQTVNIKSVGADYEVTDGERLPLAV 346 (915)
Q Consensus 283 ~~~l~~~~~dg~i~i~~~~~~~~~-~~------------~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~g~~~~~~~ 346 (915)
++.+++++.||.+++|........ .+ .+++. ++.. ..+.+..+
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 298 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL--------------------- 298 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE---------------------
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCEEEE---------------------
T ss_conf 99999990899699998999947778406888679999924999509999907987999---------------------
Q ss_pred EECCCCCCCCCEEEECCCCCEEEEECCC----CEEEEEEE------CCC---------CCCCCCEEEEEEECCCCEEEEE
Q ss_conf 2049756688158978899899999399----09999830------443---------4576624699992197399994
Q 002502 347 KELGTCDLYPQSLKHNPNGRFVVVCGDG----EYIIYTAL------AWR---------NRSFGSALEFVWSSDGEYAVRE 407 (915)
Q Consensus 347 ~~~~~~~~~~~~l~~s~~g~~lav~~~~----~~~i~~~~------~~~---------~~~~~~~~~~~~s~dg~~l~~~ 407 (915)
.+. .....+.++|+|+.+++++.. .+...... ... ......+.+++|+|+|+++++.
T Consensus 299 -~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~ 374 (814)
T 3mkq_A 299 -SLG---NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVV 374 (814)
T ss_dssp -ECS---CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEE
T ss_pred -ECC---CCCCEEEECCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEEEE
T ss_conf -767---9974167779987899776366411246653046555556762014651178876577406899999989994
Q ss_pred CCCEEEEECCCCCEEEE---E-ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEEECCCCEEEECCCC---CEEE
Q ss_conf 69749982257410012---4-157631124238589996489-19998635781889876120289991899---9999
Q 002502 408 SSSKIKIFSKNFQEKRS---V-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSG---DLVA 479 (915)
Q Consensus 408 ~~~~i~i~~~~~~~~~~---~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~~i~~i~~s~dg---~~la 479 (915)
+++.+.+|+........ + ...|+|+ +.++++++.+ .+.+|+.- ......+..+.|++++ ..++
T Consensus 375 ~~~~~~i~~~~~~~~~~~~~i~~~~~spd----g~~la~~~~~g~v~l~~~~-----~~~~~~v~~~~~s~dg~~~~~l~ 445 (814)
T 3mkq_A 375 GDGEYVIYTALAWRNKAFGKCQDFVWGPD----SNSYALIDETGQIKYYKNF-----KEVTSWSVPMHSAIDRLFSGALL 445 (814)
T ss_dssp ETTEEEEEETTTTEEEEEEECSEEEECTT----SSCEEEECTTCCEEEEETT-----EECTTCCCCCSSCCCEEECSSSE
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEEEECC----CCEEEEEECCCCEEEEECC-----CCCCCEEECCCCCCCCEECCEEE
T ss_conf 29889999874544567995479999479----9859999689839999777-----77524397378675523654699
Q ss_pred EEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEE------CCCCEEEEEECC-
Q ss_conf 99498199999138889976627999884453442368676556677568943--789997------369859999899-
Q 002502 480 IASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYN------NSSWRLNYCVGG- 550 (915)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~------~~~~~l~~~~~~- 550 (915)
+++.++.+.+|- ++. + ..+..+........|.. ..++.. .......+....
T Consensus 446 ~~~~d~~v~~~d--------~~~-------~-----~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~ 505 (814)
T 3mkq_A 446 GVKSDGFVYFFD--------WDN-------G-----TLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKD 505 (814)
T ss_dssp EEEETTEEEEEC--------TTT-------C-----CEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECHH
T ss_pred EEECCCEEEEEE--------CCC-------C-----CEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCEEEEEEECHH
T ss_conf 996699899999--------876-------9-----59999735888799969999999998676667742899995468
Q ss_pred -------------------EEEEEEECCCCEE-------EEEEEEECCEEEEEECCCCEEEEEECCHH--HHHHHHHHCC
Q ss_conf -------------------7869993034358-------99997408899999168835899935027--8787999805
Q 002502 551 -------------------EVTTMFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLLSL--IEYKTLVMRG 602 (915)
Q Consensus 551 -------------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~l~~~~--~~~~~~~~~~ 602 (915)
....+........ ++-+....+++..+-..-......+...+ ..|...--+-
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~~~~i~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 585 (814)
T 3mkq_A 506 AYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDNKV 585 (814)
T ss_dssp HHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEETTEEEEECTTSEEEEEETTEEEEEEECSSCCEEEEEEGGGTEE
T ss_pred HHHHHHHCCCCCCCCCHHHHEEEEEEECCEEEEEEEECCEEEEECCCCEEEEEECCEEEEEEECCCCEEEEEEEECCCEE
T ss_conf 86666641687621250222136457642787659808889997688708999698668999989667999998329999
Q ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH-CCCCC------CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98889635699994117889999993998365542-14586------630230001399899999999809956899999
Q 002502 603 DLERANEILPSIPKEHHNSVARFLESRGMIEEAIE-VATDP------DYRFELAIQLGRLEVAQEIATEVQSESKWKQLG 675 (915)
Q Consensus 603 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~-~~~~~------~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la 675 (915)
-+-+.................+.....+..+.|.+ +.... .....+...+|.+++|.++++. + ..-.
T Consensus 586 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---~---~~~f 659 (814)
T 3mkq_A 586 YLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPD---Q---DQKF 659 (814)
T ss_dssp EEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCC---H---HHHH
T ss_pred EEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEECCCC---C---CHHE
T ss_conf 999288887999989099999699870799999988874288467899999999868986896052789---3---1425
Q ss_pred HHHHHCCCHHHHHHH----------------HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
Q ss_conf 999974991158999----------------9881895514778773299888999999999929923988999972998
Q 002502 676 ELAMSTGKLEMAEGC----------------MKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKL 739 (915)
Q Consensus 676 ~~a~~~~~~~~A~~~----------------y~~~~d~~~l~~l~~~~g~~~~~~~l~~~~~~~~~~~~a~~~~~~~g~~ 739 (915)
+.++..++++.|.++ +.+.++++.+.++|...+|.+++..+..+....++...+...++..|++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~ 739 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKF 739 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred EHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH
T ss_conf 02145099999999998617676899999999984998999999987027135589987729999999999999985866
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8999999987992578998885099707899999998542009143421189934--77763247999988888740259
Q 002502 740 EDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEE--YSNLFDDWQVALAVESKAAATRG 817 (915)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~~ar~~~~~~~~~~~~~w~~~L~~~~~~~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 817 (915)
+.|..+|++++++++|++|.+..+. |.+++. +|+... |.+ .+.+...|+.+|+..|.++.|..
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~~~~---------~~~A~~-----lA~~~~-~~~~~i~~~~~~~~~~L~~~~~~~~a~~ 804 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIKSQR---------FSEAAF-----LGSTYG-LGDNEVNDIVTKWKENLILNGKNTVSER 804 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHH-----HHHHTT-CCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---------HHHHHH-----HHHHHC-CCHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 7999999880999999999998699---------478999-----998709-9757889999999999876164668986
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=415.72 Aligned_cols=533 Identities=22% Similarity=0.335 Sum_probs=368.9
Q ss_pred HHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEEC
Q ss_conf 54441358887899999589997999986890999977999445898804988799999579999999958976999987
Q 002502 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (915)
Q Consensus 7 ~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd~ 86 (915)
.+++|.+|++.|++++|||||++||+++.|+.|+||| .+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||.
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE-CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 9439878998579999989989999993899899997-999789999689899899999899999999969897999989
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 99926699705899789999939999999997599199998899905899861598436999991299989999978995
Q 002502 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (915)
Q Consensus 87 ~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (915)
+++.+..+.+|.+.|.+++|+|++++|++++.|+.+++|+.... .......+...+.++.++| +...++.++.++.
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 162 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 162 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC--EEEEECCCSSCEEEEEECT-TSSCEEEEETTSE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCC--EEEECCCCCCCEEEEEEEC-CCCCCEECCCCCC
T ss_conf -99789999789998899999899998999807983352023552--0011047777435554203-7763200255531
Q ss_pred EEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf 99998899997169916898833999976799589999977990999978999579995178668599999289999999
Q 002502 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (915)
Q Consensus 167 i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~ 246 (915)
+.+|+.. .........+...+.++.++|++. ++++++.|+.|++|+. +++.+..+.+|...|.+++|+|++.++++
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 163 VKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp EEEECTT-SCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EECCCCC-EEEEEECCCCCCCEEEEEECCCCC--EEEEECCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 0000000-000000268776356654169977--8999859998999949-99689999468898899999799999999
Q ss_pred EECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCCE------------EEECCCCCE
Q ss_conf 98588099996897504545204774489999941998699996289199961788541------------687289959
Q 002502 247 GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV------------ASMDNSGKI 314 (915)
Q Consensus 247 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~ 314 (915)
++.|+.|++|+. +++.+..+..+...+.+++|+|+++.+++++.++.+++|....... .++.+++..
T Consensus 239 ~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 317 (577)
T 2ymu_A 239 ASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317 (577)
T ss_dssp EETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred EECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 918998999959-9979999806889879999968999999995999799994899589997068897699999999999
Q ss_pred EEEEEC--CEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----CC
Q ss_conf 999606--1599996541541010589621001220497566881589788998999993-9909999830443----45
Q 002502 315 IWAKHN--EIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NR 387 (915)
Q Consensus 315 ~~~~~~--~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~~ 387 (915)
+..... .+.. |+... ..+ ..+..+...+.+++|+|+|+++++++ ++.+.+|+..... ..
T Consensus 318 l~t~~~d~~i~~---------w~~~~-~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~ 383 (577)
T 2ymu_A 318 IASASDDKTVKL---------WNRNG-QHL----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383 (577)
T ss_dssp EEEEETTSCEEE---------EETTS-CEE----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred EEEEECCCEEEE---------EECCC-CEE----EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 999969995999---------96999-725----7874788977999998999999999699989999089978998527
Q ss_pred CCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCEEEEEE--------CCCCCCEEECCCEEEEEECC-EEEEEECCCCC
Q ss_conf 766246999921973999946-974998225741001241--------57631124238589996489-19998635781
Q 002502 388 SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAECR 457 (915)
Q Consensus 388 ~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~ 457 (915)
+...+.+++|+|+++++++++ ++.|++|+.+.+....+. ..|+|+ +.+|++++.+ .+.+||. +++
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTT----SSEEEEEETTSEEEEEET-TSC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCC----CCEEEEECCCCEEEEEEC-CCC
T ss_conf 889748999989999999994999899996999789896288997579999899----999999939998999979-998
Q ss_pred EEEEEE---CCCCEEEECCCCCEEEEEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--
Q ss_conf 889876---120289991899999999498199999138889976627999884453442368676556677568943--
Q 002502 458 LIRRID---VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG-- 532 (915)
Q Consensus 458 ~i~~~~---~~i~~i~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~-- 532 (915)
.+..+. ..+..++|+|++++|++++.++.+.+|-. .+. ....+..-...|.+.+|..
T Consensus 459 ~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~----------------~~~--~~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----------------NGQ--LLQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET----------------TSC--EEEEEECCSSCEEEEEECTTS
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC----------------CCC--EEEEEECCCCCEEEEEECCCC
T ss_conf 89997278997789999699999999919897999939----------------997--899986799998999991899
Q ss_pred CEEEEECCCCEEEEEE--CCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCEEEE
Q ss_conf 7899973698599998--99786999303435899997408899999168835899
Q 002502 533 DCFIYNNSSWRLNYCV--GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGY 586 (915)
Q Consensus 533 ~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 586 (915)
.+++.....+.+..+. +.....+..+..++.-+.+.|.+..++....++.+..|
T Consensus 521 ~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 99999989699999969997898971888887899996899999999089999996
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=411.01 Aligned_cols=500 Identities=15% Similarity=0.242 Sum_probs=386.7
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEEC--CCCEEEEEECCCEEEE
Q ss_conf 55444135888789999958999799998689099997799944589880498879999957--9999999958976999
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRV 83 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~--~~~~l~~g~~dg~i~i 83 (915)
+....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.++.|+| ++..+++|+.|+.|++
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred CEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEE
T ss_conf 78887606777789999926999899981899599987799936899958997379999840899659999808970999
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEC-------------CCCCEEEEEE
Q ss_conf 987999266997058997899999399999999975991999988999058998615-------------9843699999
Q 002502 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------------HSHYVMQVTF 150 (915)
Q Consensus 84 wd~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~i~~~~~ 150 (915)
||+.+++....+.+|.+.|.+++|+|+++++++++.||.|++||+.++ .....+.. ....+.+++|
T Consensus 728 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC-CCCCEECCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 989996342201277797889999259998999978985999968888-6553020232102467764456501799999
Q ss_pred ECCCCCEEEEEECCCCEEEEECCCCCCCEEEE-CCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC
Q ss_conf 12999899999789959999889999716991-68988339999767995899999779909999789995799951786
Q 002502 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (915)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (915)
+| ++..+++++ ++.+.+|++.++.....+. .|...+.+++|+|++. ++++++.++.|++|++.++..+..+.+|.
T Consensus 807 s~-dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~h~ 882 (1249)
T 3sfz_A 807 SA-DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH--LAVIALSQYCVELWNIDSRLKVADCRGHL 882 (1249)
T ss_dssp CT-TSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT--EEEEECSSSCEEEEETTTTEEEEEECCCS
T ss_pred CC-CCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEECCCCC
T ss_conf 78-998899975-895999995689723577478777607999827888--89999479869999867895653227876
Q ss_pred CCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEE-------------------------------------EEECCCCC
Q ss_conf 68599999289999999985880999968975045-------------------------------------45204774
Q 002502 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-------------------------------------NTLNYGLE 272 (915)
Q Consensus 230 ~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------~~~~~~~~ 272 (915)
..|.+++|+|+++.+++++.||.|++|++.+.... .....+..
T Consensus 883 ~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1249)
T 3sfz_A 883 SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA 962 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCS
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCC
T ss_conf 65689999899998999958972898874665201021133103689759986899813776248984476508972567
Q ss_pred CEEEEEEECCCCEEEEEECCCEEEEECCCCCC-------------EEEECCCCCEEEEEE--CCEEEEEEEECCCCEECC
Q ss_conf 48999994199869999628919996178854-------------168728995999960--615999965415410105
Q 002502 273 RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP-------------VASMDNSGKIIWAKH--NEIQTVNIKSVGADYEVT 337 (915)
Q Consensus 273 ~v~~i~~s~~~~~l~~~~~dg~i~i~~~~~~~-------------~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~ 337 (915)
.+.+++++|+++++++|+.+|.+.+|...... ...+.+++..+.... +.+.. |+..
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v---------wd~~ 1033 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV---------WNWQ 1033 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE---------EETT
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEE---------EECC
T ss_conf 2789999589977999869998899975787234430367771689999899998999869987999---------9879
Q ss_pred CCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCC-----CCCCEEEEEEECCCCEEEEEC-CCE
Q ss_conf 89621001220497566881589788998999993990999983044345-----766246999921973999946-974
Q 002502 338 DGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSK 411 (915)
Q Consensus 338 ~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~ 411 (915)
+++... ...+...+..+.++|++.+++.+.++.+.+|+....+.. +.+.+.+++|+|+++++++++ ++.
T Consensus 1034 ~~~~~~-----~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~ 1108 (1249)
T 3sfz_A 1034 TGDYVF-----LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108 (1249)
T ss_dssp TTEEEC-----CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSC
T ss_pred CCCEEE-----EECCCCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCC
T ss_conf 996689-----852787389999908995899978896899888988655887466884899999899998999849994
Q ss_pred EEEECCCCCEE-------E-EE-ECCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEE------------ECCCCEE
Q ss_conf 99822574100-------1-24-157631124238589996489-1999863578188987------------6120289
Q 002502 412 IKIFSKNFQEK-------R-SV-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRI------------DVTVKNL 469 (915)
Q Consensus 412 i~i~~~~~~~~-------~-~~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~------------~~~i~~i 469 (915)
|++|+...... . .+ ...|+|+ |.+|++++.+ .|++||+.+++.+..+ ...|..+
T Consensus 1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~d----g~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLD----GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp CCEECSSSSSCSBCCCCCSSCEEEEEECSS----SSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred EEEEECCCCCEEEEECCCCCCEEEEEECCC----CCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
T ss_conf 899878985001255068776799999799----9989998289979999889994578851444442102567428999
Q ss_pred EECCCCCEEEEEECCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEC--CEEEEECCCCEEEEE
Q ss_conf 991899999999498199999138889976627999884453442368676556677568943--789997369859999
Q 002502 470 YWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG--DCFIYNNSSWRLNYC 547 (915)
Q Consensus 470 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~--~~~i~~~~~~~l~~~ 547 (915)
.|+++|.++++++ ..+.+|+... +. ....+.. ....+.+..|.. ..++.....+.+..+
T Consensus 1185 ~fs~dg~~l~s~~-g~v~vwd~~~---------g~------~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1185 CFSPDSKTLVSAG-GYLKWWNVAT---------GD------SSQTFYT---NGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp EECTTSSCEEEES-SSEEEBCSSS---------CB------CCCCCCC---SSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred EECCCCCEEEECC-CEEEEEECCC---------CC------EEEEEEC---CCCCCCEEEECCCCCEEEEECCCCEEEEE
T ss_conf 9978999899779-8599989888---------95------0046400---47753279997898779996688179997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=408.77 Aligned_cols=456 Identities=18% Similarity=0.241 Sum_probs=349.7
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC--CEEEEEEECCCCEEEEEEECCCCEEEEEECC----C
Q ss_conf 554441358887899999589997999986890999977999--4458988049887999995799999999589----7
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVTELPVRSAKFVARKQWVVAGADD----M 79 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~d----g 79 (915)
.....+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++ .....+..|.++|.+++|+|+++.|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 42737658998659999999996899994899789948989841566762255784489998999997999989977366
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEE
Q ss_conf 699998799926699705899789999939999-9999975991999988999058998615984369999912999899
Q 002502 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (915)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (915)
.|++|+ +++....+.+|...|.+++|+|+++ .|++++.|++|++||...+ .+...+.+|...|.+++|+| ++++|
T Consensus 130 ~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~~V~~v~fsp-dg~~l 205 (611)
T 1nr0_A 130 HVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNP-DGSLF 205 (611)
T ss_dssp EEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECT-TSSEE
T ss_pred EEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECCCEEEEEECCCC-EEEEEECCCCCCEEEEEECC-CCCEE
T ss_conf 999963--899763254788983699988999829999928980999979997-57665200257169999979-99989
Q ss_pred EEEECCCCEEEEECCCCCCCEEEE-------CCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE--------
Q ss_conf 999789959999889999716991-------68988339999767995899999779909999789995799--------
Q 002502 159 ASASLDRTIKIWNLGSPDPNFTLD-------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-------- 223 (915)
Q Consensus 159 ~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------- 223 (915)
++++.|++|++||+.+++....+. +|...|.+++|+|++. ++++++.|+.|++||+.+++++.
T Consensus 206 as~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 99989991999889998286651366432356678789999979999--9999908980999968887013440478876
Q ss_pred -----------------------------------EECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEE-
Q ss_conf -----------------------------------95178668599999289999999985880999968975045452-
Q 002502 224 -----------------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL- 267 (915)
Q Consensus 224 -----------------------------------~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 267 (915)
.+.+|...|.+++|+|++++|++++.|+.|++||+.++.....+
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~ 363 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 363 (611)
T ss_dssp GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS
T ss_pred CCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECC
T ss_conf 64068999738879999589968999688997446983788888999991899989999589849999788792563216
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCC----------------EEEECCCCCEEEE-EECCEEEEEEEEC
Q ss_conf 0477448999994199869999628919996178854----------------1687289959999-6061599996541
Q 002502 268 NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP----------------VASMDNSGKIIWA-KHNEIQTVNIKSV 330 (915)
Q Consensus 268 ~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i~~~~~~~----------------~~~~~~~~~~~~~-~~~~i~~~~~~~~ 330 (915)
..|...+.+++|++++ .+++++.|+.+++|...... ..++.+++..+.. ....+..++
T Consensus 364 ~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~---- 438 (611)
T 1nr0_A 364 DVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS---- 438 (611)
T ss_dssp CSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEE----
T ss_pred CCCCCEEEEEEECCCC-CEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEEECCEEEEEE----
T ss_conf 6776507899987899-69999848966895468854356521200148997079980799699999676399984----
Q ss_pred CCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC------CCCCCCEEEEEEECCCCE
Q ss_conf 541010589621001220497566881589788998999993-9909999830443------457662469999219739
Q 002502 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR------NRSFGSALEFVWSSDGEY 403 (915)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~------~~~~~~~~~~~~s~dg~~ 403 (915)
.++ +. .+ .+...+.+++|+|+|+++++++ ++.+.+|+..... ..+...+.+++|+|+|++
T Consensus 439 -------~~~-~~----~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 439 -------HGK-LT----EV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp -------TTE-EE----EE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred -------CCC-EE----EE-ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCE
T ss_conf -------894-34----64-068895499992899899996899739999945992224101577886079999899998
Q ss_pred EEEEC-CCEEEEECCCC-CE---------EE-EE-ECCCCCCEEECCCEEEEEECC-EEEEEECCCCC-EE-EEE----E
Q ss_conf 99946-97499822574-10---------01-24-157631124238589996489-19998635781-88-987----6
Q 002502 404 AVRES-SSKIKIFSKNF-QE---------KR-SV-RPTFSAERIYGGTLLAMCSND-FICFYDWAECR-LI-RRI----D 463 (915)
Q Consensus 404 l~~~~-~~~i~i~~~~~-~~---------~~-~~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~-~i-~~~----~ 463 (915)
+++++ +++|++|+... .. +. .+ ...|+|+ |++|++++.| +|++|++.++. .+ ... .
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd----g~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD----NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEEEEECCCCEEEEEECCC----CCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCC
T ss_conf 999948998999885778722321026404664258998998----9979999799729999788755563264446765
Q ss_pred CCCCEEEECCCCCEEEEEECCEEEEEE
Q ss_conf 120289991899999999498199999
Q 002502 464 VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 464 ~~i~~i~~s~dg~~la~~~~~~~~~~~ 490 (915)
..|..+.|+|++. |++++.|+.+.+|
T Consensus 582 ~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 582 SSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp SCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred CCEEEEEECCCCE-EEEECCCCCEEEE
T ss_conf 6711899858997-9995288778998
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=396.17 Aligned_cols=458 Identities=24% Similarity=0.401 Sum_probs=359.7
Q ss_pred HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf 55444135888789999958999799998689099997799944589880498879999957999999995897699998
Q 002502 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (915)
Q Consensus 6 ~~~~~l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd 85 (915)
++.+.+.+|.+.|.+++|+|++++|++++.|+.|+|||. +++.+..+..|..+|.+++|+|++++|++++.|+.+++|+
T Consensus 48 ~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~ 126 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 789999689899899999899999999969897999989-9978999978999889999989999899980798335202
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 79992669970589978999993999999999759919999889990589986159843699999129998999997899
Q 002502 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (915)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (915)
... ........+...+.++.++|++..++.++.++.+.+|+.... .......+...+.++.++| ++..+++++.|+
T Consensus 127 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 202 (577)
T 2ymu_A 127 RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSP-DGQTIASASDDK 202 (577)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--EEEEEECCSSCEEEEEECT-TSSCEEEEETTS
T ss_pred CCC-CEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEE--EEEECCCCCCCEEEEEECC-CCCEEEEECCCC
T ss_conf 355-200110477774355542037763200255531000000000--0000268776356654169-977899985999
Q ss_pred CEEEEECCCCCCCEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 59999889999716991689883399997679958999997799099997899957999517866859999928999999
Q 002502 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIII 245 (915)
Q Consensus 166 ~i~i~d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~ 245 (915)
.|++|+. +++....+..|...+.+++|+|++. ++++++.|+.|++|+. +++.+..+.+|...|.+++|+|+++.++
T Consensus 203 ~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~ 278 (577)
T 2ymu_A 203 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIA 278 (577)
T ss_dssp EEEEECT-TSCEEEEEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEEEEC-CCCEEEEEECCCCCEEEEEECCCCC--EEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 8999949-9968999946889889999979999--9999918998999959-9979999806889879999968999999
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEECCCCCCE------------EEECCCCC
Q ss_conf 998588099996897504545204774489999941998699996289199961788541------------68728995
Q 002502 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPV------------ASMDNSGK 313 (915)
Q Consensus 246 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~~~~dg~i~i~~~~~~~~------------~~~~~~~~ 313 (915)
+++.|+.|++|+. +++....+..|...+++++|+|+++.+++++.+|.+++|......+ .++.+++.
T Consensus 279 ~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~ 357 (577)
T 2ymu_A 279 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQ 357 (577)
T ss_dssp EEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 9959997999948-995899970688976999999999999999699959999699972578747889779999989999
Q ss_pred EEEEEECCEEEEEEEECCCCEECCCCCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCC----CCC
Q ss_conf 99996061599996541541010589621001220497566881589788998999993-9909999830443----457
Q 002502 314 IIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR----NRS 388 (915)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~----~~~ 388 (915)
.+......-.+ .+ |+ .+++.+ ..+..+...+++++|+|+|+++++++ ++.+.+|+..... ..+
T Consensus 358 ~l~~~~~dg~v-~~------~~-~~~~~~----~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 425 (577)
T 2ymu_A 358 TIASASDDKTV-KL------WN-RNGQLL----QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 425 (577)
T ss_dssp EEEEEETTSEE-EE------EE-TTCCEE----EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC
T ss_pred EEEEEECCCEE-EE------EC-CCCCEE----EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCC
T ss_conf 99999699989-99------90-899789----98527889748999989999999994999899996999789896288
Q ss_pred CCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCEEEEEE--------CCCCCCEEECCCEEEEEECC-EEEEEECCCCCE
Q ss_conf 66246999921973999946-974998225741001241--------57631124238589996489-199986357818
Q 002502 389 FGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVR--------PTFSAERIYGGTLLAMCSND-FICFYDWAECRL 458 (915)
Q Consensus 389 ~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~~~~~~--------~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~ 458 (915)
...+.+++|+|+++++++++ ++.|++|+.+.+....+. ..|+|+ +.+|++++.+ .|++||. ++++
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd----~~~las~~~d~~i~iw~~-~~~~ 500 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNR-NGQL 500 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTT----SCEEEEEETTSEEEEEET-TSCE
T ss_pred CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC----CCEEEEEECCCEEEEECC-CCCE
T ss_conf 99757999989999999993999899997999889997278997789999699----999999919897999939-9978
Q ss_pred EEEEE---CCCCEEEECCCCCEEEEEECCEEEEEE
Q ss_conf 89876---120289991899999999498199999
Q 002502 459 IRRID---VTVKNLYWADSGDLVAIASDTSFYILK 490 (915)
Q Consensus 459 i~~~~---~~i~~i~~s~dg~~la~~~~~~~~~~~ 490 (915)
++.+. ..|..++|+|+|++|++++.|+.+.+|
T Consensus 501 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw 535 (577)
T 2ymu_A 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 99986799998999991899999999896999999
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=369.13 Aligned_cols=467 Identities=12% Similarity=0.073 Sum_probs=341.0
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 13588878999995899979999868909999779994458988049887999995799999999589769999879992
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (915)
Q Consensus 11 l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~~g~~dg~i~iwd~~~~~ 90 (915)
..+|.+.|.+++|+|++.+||+|+.||.|+||+..+.+....+ .|..+|.+++|+| +++|++++.|+.|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred CCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEC-CCCCCEEEEEECC-CCEEEEEECCCEEEEEECCCCC
T ss_conf 1688998489999799998999929798999968994799986-8999779999908-9889999895959999899996
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE----------EEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf 669970589978999993999999999759919999889990589----------9861598436999991299989999
Q 002502 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT----------QIFEGHSHYVMQVTFNPKDTNTFAS 160 (915)
Q Consensus 91 ~~~~~~~~~~~i~~i~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (915)
.+..+. |.+.|++++|+|+++++++|+.||.|++||++++.... ..+.+|...|.+++|+|.+...+++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEE
T ss_conf 899974-8998799998799998999949992999999999626503043210002544578973899976699998999
Q ss_pred EECCCCEEEEECCCCCCCEEEECC------------------CCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE
Q ss_conf 978995999988999971699168------------------98833999976799589999977990999978999579
Q 002502 161 ASLDRTIKIWNLGSPDPNFTLDAH------------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (915)
Q Consensus 161 ~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (915)
++.|+.| +||+++++....+..| ...|.+++|+|++. ++++++.||.|++||+++++++
T Consensus 170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~--~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL--HIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS--EEEEEETTCCEEEEETTTCCEE
T ss_pred EECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEEECCCEEEEEECCCCCEE
T ss_conf 9189849-998778965799833557767776544332345677768999859999--9999989993999987899688
Q ss_pred EE--EC---C-------------CCCCEEEEEEEC----CC-CEEEEEECC-----CEEEEEECC---------------
Q ss_conf 99--51---7-------------866859999928----99-999999858-----809999689---------------
Q 002502 223 QT--LE---G-------------HTHNVSAVCFHP----EL-PIIITGSED-----GTVRIWHAT--------------- 259 (915)
Q Consensus 223 ~~--~~---~-------------~~~~i~~i~~~~----~~-~~l~~~~~d-----g~i~iwd~~--------------- 259 (915)
.. +. . +...|.+++|++ ++ .++++|+.+ ..+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 88850123457877767888855567745799973499988789996887777888528999547898755542556546
Q ss_pred ---CCEEEEEEC-CCCCCEEEEEEEC----------CCCEEEEEECCCEEEEECCCCCCEEEECCCC-CEEEEEECCEEE
Q ss_conf ---750454520-4774489999941----------9986999962891999617885416872899-599996061599
Q 002502 260 ---TYRLENTLN-YGLERVWAIGYMK----------SSRRIVIGYDEGTIMVKIGREEPVASMDNSG-KIIWAKHNEIQT 324 (915)
Q Consensus 260 ---~~~~~~~~~-~~~~~v~~i~~s~----------~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 324 (915)
+.+....+. .+...+..+.+.+ +...+++++.+|.+++|.............. ..+......+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred HHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 64174522787418999547999977889886778785069999179848999789998556555689852235897248
Q ss_pred EEEEEC-CCCEECCC-CCEEEEEEEECCCCCCCCCEEEECCCCCEEEEEC-CCCEEEEEEECCCC---------------
Q ss_conf 996541-54101058-9621001220497566881589788998999993-99099998304434---------------
Q 002502 325 VNIKSV-GADYEVTD-GERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN--------------- 386 (915)
Q Consensus 325 ~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~--------------- 386 (915)
..+... ...|.... .. ......+..+...+..++|+|+++++++++ |+.+.+|+......
T Consensus 407 ~~~s~~~~~~w~~~~~~~--~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAA--QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEHHHHHHHHHTT--BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred EEEEECCHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCC
T ss_conf 999974999998888604--699975457857787533366675899965898389997877645677367750154137
Q ss_pred -CCCCCEEEEEEECCCCEEEEEC-CCEEEEECCCCCE-------------------------------------------
Q ss_conf -5766246999921973999946-9749982257410-------------------------------------------
Q 002502 387 -RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE------------------------------------------- 421 (915)
Q Consensus 387 -~~~~~~~~~~~s~dg~~l~~~~-~~~i~i~~~~~~~------------------------------------------- 421 (915)
.+...+.+++|+||++++++++ +++|++|+.....
T Consensus 485 ~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 564 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQG 564 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78887646999638999699994585799999248655575455778665113455134679654322423689887776
Q ss_pred ---EEEE-------E-CCCCCCEEECCCEEEEEECC-EEEEEECCCCCEEEEE---------ECCCCEEEEC-----CCC
Q ss_conf ---0124-------1-57631124238589996489-1999863578188987---------6120289991-----899
Q 002502 422 ---KRSV-------R-PTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRI---------DVTVKNLYWA-----DSG 475 (915)
Q Consensus 422 ---~~~~-------~-~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~---------~~~i~~i~~s-----~dg 475 (915)
...+ . .+|+|+ | +||+++.| +|++||+.++..+.+. ...|++++|+ +||
T Consensus 565 ~~~~~~l~~h~~~V~svafSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg 639 (902)
T 2oaj_A 565 FMPSTAVHANKGKTSAINNSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG 639 (902)
T ss_dssp EEEEEEECCCSCSEEEEEECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred CCEEEEEECCCCCEEEEEECCC----C-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEEECCCCC
T ss_conf 0146999868886779996487----6-8999958976999988898399970246726466661399999998417898
Q ss_pred ---CEEEEEECCEEEEEE
Q ss_conf ---999999498199999
Q 002502 476 ---DLVAIASDTSFYILK 490 (915)
Q Consensus 476 ---~~la~~~~~~~~~~~ 490 (915)
.+|++++.|+.+++|
T Consensus 640 ~~~~~l~sgs~D~tv~~w 657 (902)
T 2oaj_A 640 YSSILMVCGTDMGEVITY 657 (902)
T ss_dssp SEEEEEEEEETTSEEEEE
T ss_pred CCCEEEEEEECCCCEEEE
T ss_conf 763389999568739999
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=366.95 Aligned_cols=540 Identities=12% Similarity=0.113 Sum_probs=402.9
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC----CEEEEEEECCCC-EEEEEEEC--CCCEEEEEECCCEEEE
Q ss_conf 1358887899999589997999986890999977999----445898804988-79999957--9999999958976999
Q 002502 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELP-VRSAKFVA--RKQWVVAGADDMFIRV 83 (915)
Q Consensus 11 l~~h~~~v~~i~~sp~~~~la~~~~dg~i~iwd~~~~----~~~~~~~~~~~~-v~~i~~s~--~~~~l~~g~~dg~i~i 83 (915)
-..|.+.|.+++|+|++++|++++ ++.|.+|++.++ +....+.+|... |.+++|+| ++++|++++.||.|++
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEE
T ss_conf 877658536899889999799935-9849999777887765143188057884499999796789988999648987999
Q ss_pred EECCCC--------CEEEEEECCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 987999--------2669970589978999993999999999759----9199998899905899861598436999991
Q 002502 84 YNYNTM--------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (915)
Q Consensus 84 wd~~~~--------~~~~~~~~~~~~i~~i~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (915)
|++.++ .....+..|...|.+++|+|+++++++++.+ +.|.+|+ .+ .....+.+|...|.++.|+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~-~~~~~~~~~~~~v~~~~~~ 169 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG-NSLGEVSGHSQRINACHLK 169 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC-CEEEECCSCSSCEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CC-CCCEEEECCCCCEEEEEEC
T ss_conf 76888765544554200011125663799999079998999316877755799997--89-8103130677438899988
Q ss_pred CCCCC-EEEEEECCCCEEEEECCCCCCCEEEECCCC---CEEEEEEEEC-CCCCEEEEEECCCEEEEEECCCCCEEEEE-
Q ss_conf 29998-999997899599998899997169916898---8339999767-99589999977990999978999579995-
Q 002502 152 PKDTN-TFASASLDRTIKIWNLGSPDPNFTLDAHQK---GVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTL- 225 (915)
Q Consensus 152 p~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~i~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 225 (915)
| ++. .+++++.|+.|++||+.+++....+..|.. .+.+++|+|+ +. ++++++.++.|++||+++++.+..+
T Consensus 170 ~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 170 Q-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--FVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp S-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC--EEEEEETTCCEEEEETTTCCEEEECC
T ss_pred C-CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCC--EEEEEECCCEEEEEECCCCCEEEEEC
T ss_conf 7-89968999957995999969996101320256777742899997897788--89998689808999899997858952
Q ss_pred C---CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCC----CCCEEEEEEECCCCEEEEEECCCEEEEE
Q ss_conf 1---78668599999289999999985880999968975045452047----7448999994199869999628919996
Q 002502 226 E---GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (915)
Q Consensus 226 ~---~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~s~~~~~l~~~~~dg~i~i~ 298 (915)
. .|...|.+++|+ ++.++++++.||.|++||+.+++....+..+ ...+.++.|. ++..+++++.+|.+.+|
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred CCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEE
T ss_conf 5444567755899981-899799984899489997888927878847877545714699918-99769999789978999
Q ss_pred CCCCCCE-EEECCCCCEEEEEECCEEEEEEEECCCCEECCCCCEEEE---EEEECCCCCCCCCEEEECCCCCEEEEECCC
Q ss_conf 1788541-687289959999606159999654154101058962100---122049756688158978899899999399
Q 002502 299 IGREEPV-ASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPL---AVKELGTCDLYPQSLKHNPNGRFVVVCGDG 374 (915)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~l~~s~~g~~lav~~~~ 374 (915)
....... ..+.... ..+..... .. ......+|..... ... ..+...+..+.|++++.+++.+.++
T Consensus 325 d~~~~~~~~~~~~~~-------~~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 325 ELGHDEVLKTISGHN-------KGITALTV-NP-LISGSYDGRIMEWSSSSMH--QDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp ETTEEEEEEEECCCS-------SCEEEEET-TT-TEEEETTSCEEETTTTEEE--CCCCSCEEEEECCSTTCCEEEETTT
T ss_pred ECCCCCEEEEEECCC-------CCEEEEEE-CC-CEEECCCCEEEEEECHHHC--CCCCCCEEEEEECCCCEEEEEECCC
T ss_conf 888992889994777-------87899995-67-4898799959998752415--7556851799978986799995899
Q ss_pred CEEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCEEEEECCCC-CEEEEEECCCCCCEEE-CCCEEEEEEC-C-EEEE
Q ss_conf 099998304434576624699992197399994697499822574-1001241576311242-3858999648-9-1999
Q 002502 375 EYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNF-QEKRSVRPTFSAERIY-GGTLLAMCSN-D-FICF 450 (915)
Q Consensus 375 ~~~i~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~i~i~~~~~-~~~~~~~~~~s~~~i~-~g~~La~~~~-~-~i~~ 450 (915)
.+.+|+....+... ....+++++++.+++.+.++.+.+|+... +....+...+.+..+. .+.+|++++. + .+++
T Consensus 394 ~i~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 394 TLKVNGITKHEFGS--QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 471 (615)
T ss_dssp EEEETTEEEEECSS--CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred CEEEEECCCCCCCC--CCEEEEECCCCCEEEEECCCCEEEEECCCCCEEEECCCCCCCEEEEECCCEEEEEECCCCEEEE
T ss_conf 79998866676367--8469998289878999679826999446786655515678720778838889996568986999
Q ss_pred EECCCCCEE-EEEE---CCCCEEEECCCCCEEEEEECCEEEEEE-ECHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 863578188-9876---120289991899999999498199999-13888997662799988445344236867655667
Q 002502 451 YDWAECRLI-RRID---VTVKNLYWADSGDLVAIASDTSFYILK-YNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (915)
Q Consensus 451 ~d~~~~~~i-~~~~---~~i~~i~~s~dg~~la~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (915)
||+.+++.. ..+. ..+..+.|+|++++|++++.++.+.+| ... + .....+... ....+
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~---------~------~~~~~~~~~--h~~~v 534 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS---------R------EVKTSRWAF--RTSKI 534 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------T------EEEECCSCC--CSSCE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCC---------C------CCEEEEECC--CCCCE
T ss_conf 988885435333677657507999989999899817998599865777---------7------624676047--88714
Q ss_pred EEEEE------------ECCEEEEECCCCEEEEEECCEE-EEEEEC---CCCEEEEEEEEECCEEEEEECCCCEEEEEEC
Q ss_conf 75689------------4378999736985999989978-699930---3435899997408899999168835899935
Q 002502 526 RTGLW------------VGDCFIYNNSSWRLNYCVGGEV-TTMFHL---DRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (915)
Q Consensus 526 ~~~~w------------~~~~~i~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 589 (915)
.+..| ++.+++.....+.+..+..... ..+..+ ...+.-+.+.+.+. ++....++.+..|.+.
T Consensus 535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCCCC-EEEECCCCEEEEEEEE
T ss_conf 699976832345332468888999817971999977888540311335943058999738997-2884599639999601
Q ss_pred C
Q ss_conf 0
Q 002502 590 L 590 (915)
Q Consensus 590 ~ 590 (915)
.
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred C
T ss_conf 5
Done!