Your job contains 1 sequence.
>002503
MEKKAKIKIAITIASLAAISILFTRQQRRRRKLNQCPQYSCYLQSEPKPQHNFKRVLADN
SYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNE
LANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADP
GVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFL
QREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRR
SNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARV
HDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLD
DVERQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQN
GVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKL
VEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQ
LKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASI
TNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGM
SPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMVESATMDATKADNVLGLHAIETQK
SGEKEGRSSLTESHESKPPTCSNGGIDQLVFSTIWKKMNSTSKVSDSKDDSVGNVDDECE
NSSVQNGFGSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALH
PHFLPAGWDVMHRI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002503
(914 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504955936 - symbol:AT2G32415 species:3702 "Ara... 2480 3.2e-283 2
POMBASE|SPAC1F3.01 - symbol:rrp6 "exosome 3'-5' exoribonu... 543 2.4e-50 2
DICTYBASE|DDB_G0271572 - symbol:exosc10 "exosome componen... 528 1.7e-46 2
UNIPROTKB|A7E323 - symbol:EXOSC10 "Uncharacterized protei... 504 2.8e-46 1
ZFIN|ZDB-GENE-040426-781 - symbol:exosc10 "exosome compon... 501 7.2e-45 1
UNIPROTKB|B4DKG8 - symbol:EXOSC10 "Exosome component 10" ... 490 7.3e-45 1
MGI|MGI:1355322 - symbol:Exosc10 "exosome component 10" s... 496 2.5e-44 1
MGI|MGI:1922485 - symbol:Exd2 "exonuclease 3'-5' domain c... 365 3.1e-44 3
UNIPROTKB|F1RHR9 - symbol:EXOSC10 "Uncharacterized protei... 494 4.1e-44 1
CGD|CAL0000608 - symbol:RRP6 species:5476 "Candida albica... 483 4.6e-44 2
UNIPROTKB|Q59MB4 - symbol:RRP6 "Likely nuclear exosome co... 483 4.6e-44 2
UNIPROTKB|E1BMZ5 - symbol:EXOSC10 "Uncharacterized protei... 493 5.4e-44 1
UNIPROTKB|F1PI20 - symbol:EXOSC10 "Uncharacterized protei... 492 7.6e-44 1
UNIPROTKB|Q01780 - symbol:EXOSC10 "Exosome component 10" ... 490 1.1e-43 1
UNIPROTKB|E1C525 - symbol:EXOSC10 "Uncharacterized protei... 493 2.8e-43 2
DICTYBASE|DDB_G0278593 - symbol:exdl2B "3'-5' exonuclease... 370 4.3e-43 3
UNIPROTKB|D4A1X2 - symbol:LOC100366273 "Protein LOC100366... 489 8.4e-43 2
RGD|2323986 - symbol:LOC100366273 "rCG30986-like" species... 489 1.1e-42 2
SGD|S000005527 - symbol:RRP6 "Nuclear exosome exonuclease... 454 5.0e-40 1
UNIPROTKB|F1S4B8 - symbol:EXD2 "Uncharacterized protein" ... 382 5.2e-40 3
UNIPROTKB|E2QXX4 - symbol:EXD2 "Uncharacterized protein" ... 373 1.2e-39 3
UNIPROTKB|Q9NVH0 - symbol:EXD2 "Exonuclease 3'-5' domain-... 375 2.2e-39 3
WB|WBGene00000796 - symbol:crn-3 species:6239 "Caenorhabd... 417 2.4e-39 2
ZFIN|ZDB-GENE-030131-6387 - symbol:exd2 "exonuclease 3'-5... 387 4.5e-39 3
UNIPROTKB|E1BEQ0 - symbol:EXD2 "Uncharacterized protein" ... 374 4.5e-39 3
DICTYBASE|DDB_G0278079 - symbol:exdl2A "3'-5' exonuclease... 333 4.7e-39 4
UNIPROTKB|Q95Z10 - symbol:RRP6 "Rrp6p homologue" species:... 442 8.7e-39 1
ASPGD|ASPL0000094155 - symbol:AN11773 species:162425 "Eme... 448 1.3e-38 1
ASPGD|ASPL0000095540 - symbol:AN11774 species:162425 "Eme... 448 1.3e-38 1
RGD|1311087 - symbol:Exd2 "exonuclease 3'-5' domain conta... 366 4.9e-38 4
FB|FBgn0038269 - symbol:Rrp6 "Rrp6" species:7227 "Drosoph... 411 1.4e-37 4
UNIPROTKB|E1BXG2 - symbol:EXD2 "Uncharacterized protein" ... 377 1.0e-36 3
FB|FBgn0037901 - symbol:CG6744 species:7227 "Drosophila m... 327 2.7e-36 3
UNIPROTKB|J9NWB3 - symbol:EXD2 "Uncharacterized protein" ... 373 2.3e-34 2
TIGR_CMR|GSU_0443 - symbol:GSU_0443 "ribonuclease D, puta... 277 2.8e-23 2
TIGR_CMR|ECH_0300 - symbol:ECH_0300 "putative ribonucleas... 200 1.4e-13 2
TIGR_CMR|CPS_3518 - symbol:CPS_3518 "ribonuclease D" spec... 168 2.6e-11 2
TIGR_CMR|SO_2580 - symbol:SO_2580 "ribonuclease D" specie... 151 2.7e-10 2
UNIPROTKB|P09155 - symbol:rnd "RNase D" species:83333 "Es... 162 1.3e-08 2
TIGR_CMR|SPO_2167 - symbol:SPO_2167 "ribonuclease D" spec... 161 2.1e-08 1
TIGR_CMR|APH_0137 - symbol:APH_0137 "putative ribonucleas... 164 2.2e-08 2
UNIPROTKB|O07183 - symbol:MT2755 "CONSERVED HYPOTHETICAL ... 138 2.0e-07 2
TIGR_CMR|APH_1098 - symbol:APH_1098 "3''-5'' exonuclease ... 139 4.2e-07 1
TIGR_CMR|NSE_0529 - symbol:NSE_0529 "3'-5' exonuclease fa... 130 7.4e-06 1
UNIPROTKB|Q9KQL4 - symbol:rnd "Ribonuclease D" species:24... 138 2.2e-05 3
TIGR_CMR|VC_1984 - symbol:VC_1984 "ribonuclease D" specie... 138 2.2e-05 3
TIGR_CMR|ECH_1011 - symbol:ECH_1011 "3'-5' exonuclease fa... 117 0.00028 1
>TAIR|locus:504955936 [details] [associations]
symbol:AT2G32415 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=ISM] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
SMART:SM00474 EMBL:CP002685 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
KO:K12591 IPI:IPI00520495 RefSeq:NP_850189.5 UniGene:At.47141
ProteinModelPortal:F4ITQ6 SMR:F4ITQ6 PRIDE:F4ITQ6
EnsemblPlants:AT2G32415.1 GeneID:817803 KEGG:ath:AT2G32415
OMA:ICVGCGE Uniprot:F4ITQ6
Length = 891
Score = 2480 (878.1 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
Identities = 479/741 (64%), Positives = 574/741 (77%)
Query: 24 TRQQRRRRKLNQCPQYS-CYLQSEPKPQHNFKRVLADNSYSPFKH--------ANKEKSS 74
T +RRR++ Q S CYL SE KPQ FKRVLADNSYS FKH ++ EK S
Sbjct: 25 TEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASSSSLEKPS 84
Query: 75 GSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVD 134
HPYE EIT LLENP+ EF F + L+ SDS+VWVET+SQL ELA L+KE FAVD
Sbjct: 85 NGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYVWVETESQLKELAEILAKEQVFAVD 144
Query: 135 TEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVM 194
TEQHSLRSFLGFTALIQIST +ED+LVDTIALHD +SIL+P F+DP +CKVFHG+DNDV+
Sbjct: 145 TEQHSLRSFLGFTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKVFHGADNDVI 204
Query: 195 WLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEM 254
WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLET CGVATNK LQREDWRQRPL EM
Sbjct: 205 WLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEM 264
Query: 255 LQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIE 314
++YA+TDAHYLLYIA L ELKQ ++S PDD+F+F+LEASRRSN CLQ+YTKE E
Sbjct: 265 VRYARTDAHYLLYIADSLTTELKQLATDSS-SPDDRFHFLLEASRRSNMTCLQLYTKETE 323
Query: 315 SYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAI 374
+PG AA+SSI +R LNG G S+IS ++LVR+LCAWRDLM R+HDES R+VLSDQAI
Sbjct: 324 DFPGSAASSSIIYRHLNGHGDKSNISLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAI 383
Query: 375 IALANKAPANRTDVYTTIAQADSDVDCXXXXXXXXXXXX-VVCSHLDDVERQVCNNVENL 433
+ L+ K P ++Y TIA D + V+CSHLDD+ + + + + L
Sbjct: 384 VGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKL 443
Query: 434 DDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVK-VSRQVAKKA 492
DD+L L+KCLG NG+CP+SVFNY L N++ K S+ KQNG K +Q +KA
Sbjct: 444 DDLLPVVLKKCLGTNGTCPISVFNYSLLV--NFKTKLSSHS-APKQNGHKNFKQQFTRKA 500
Query: 493 SRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLF 552
SR+LFV+KFSCK+PVYHNCRIYANDGRLLCYCD++KLEWYL R LAKLVE+NPPAIMLLF
Sbjct: 501 SRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEWYLNRGLAKLVEENPPAIMLLF 560
Query: 553 EPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLL 612
EPKGRPEDEGN+FYIQ+K+NICV CGEG HYLRYRIIPSCYR+HFPE LKSHRSHDIVLL
Sbjct: 561 EPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLL 620
Query: 613 CVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGF---SASITNFEAGVSP 669
CVDCHEVAHAAAE+YKKQI+ EFGIPLF+ +V DS++A+ ++ + +AGVSP
Sbjct: 621 CVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSP 680
Query: 670 LQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRHA 729
L LR+AAMALL HG MPS+RREEL + V YYGGR++S+EDLE+ALL+G+SP ERR+
Sbjct: 681 LHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLE 740
Query: 730 KKRGLSLKMSKPTDFPDRQQD 750
+K+G+S K S D+Q+D
Sbjct: 741 RKKGVSFKHSAEVAGMDKQED 761
Score = 265 (98.3 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 849 GSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGW 908
G++ NSK+SLLGHGPHGKQ+V+YLLRE+GEDG+R FCQRWR+VFV+A+HP LP GW
Sbjct: 807 GNTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGW 866
Query: 909 DVMH 912
+V H
Sbjct: 867 NVSH 870
>POMBASE|SPAC1F3.01 [details] [associations]
symbol:rrp6 "exosome 3'-5' exoribonuclease subunit Rrp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 PomBase:SPAC1F3.01 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0071038 SUPFAM:SSF47819
GO:GO:0000176 GO:GO:0000175 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 eggNOG:COG0349 KO:K12591
PIR:T38769 RefSeq:NP_593004.2 ProteinModelPortal:Q10146
STRING:Q10146 EnsemblFungi:SPAC1F3.01.1 GeneID:2543630
KEGG:spo:SPAC1F3.01 OMA:YGIVCLM OrthoDB:EOG4SJ8P0 NextBio:20804636
Uniprot:Q10146
Length = 777
Score = 543 (196.2 bits), Expect = 2.4e-50, Sum P(2) = 2.4e-50
Identities = 129/325 (39%), Positives = 176/325 (54%)
Query: 72 KSSGSHPYELEITALLENPRPEFDFSN-VDLDLQRSDSFVWVETKSQLNELANALSKEFF 130
K+S HPYE EI + P + SN +D +WV T+SQL+++ L
Sbjct: 181 KNSLPHPYEPEIQNSVYPPWVS-EMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKE 239
Query: 131 FAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSD 190
AVD E H RSF GF L+QIS ++D++VDT+ L +E+ L F +P + KVFHG+
Sbjct: 240 IAVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGAT 299
Query: 191 NDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPL 250
D++WLQRDF +YVVNLFDT A +VL LA+LL+ YC +K Q DWR RPL
Sbjct: 300 MDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPL 359
Query: 251 PAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYT 310
P EML+YAQ+D HYLLYI L EL + E K N + S + L+ Y
Sbjct: 360 PREMLKYAQSDTHYLLYIWDHLRNELISKSAER------KENLMQSVFNSSKQISLRKY- 412
Query: 311 KEIESY-PGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVL 369
E+E Y P + + +L G I + R L WRD +AR DES+R+VL
Sbjct: 413 -ELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVL 471
Query: 370 SDQAIIALANKAPANRTDVYTTIAQ 394
++ +IA+A P DV++ Q
Sbjct: 472 PNRLLIAIAASKPVEAADVFSISKQ 496
Score = 39 (18.8 bits), Expect = 2.4e-50, Sum P(2) = 2.4e-50
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 368 VLSDQAIIALANKAPANRTDVYTTIAQADSDV 399
V +D II N+AP + + IA DSDV
Sbjct: 710 VSNDSPII---NEAPFDYKNQKNFIADLDSDV 738
>DICTYBASE|DDB_G0271572 [details] [associations]
symbol:exosc10 "exosome component 10" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00474 dictyBase:DDB_G0271572 GO:GO:0005730 GO:GO:0000166
GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000006
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
RefSeq:XP_645586.2 ProteinModelPortal:Q55AW0 STRING:Q55AW0
EnsemblProtists:DDB0233752 GeneID:8618039 KEGG:ddi:DDB_G0271572
OMA:LRSHIHM ProtClustDB:CLSZ2847850 Uniprot:Q55AW0
Length = 1195
Score = 528 (190.9 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 124/326 (38%), Positives = 175/326 (53%)
Query: 77 HPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTE 136
HPYE EI + + F WVET QL EL L A+D E
Sbjct: 214 HPYEYEINNFKYTEQQTQQCKEILARGLDETPFTWVETVRQLEELVEKLIHCQEIAIDLE 273
Query: 137 QHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWL 196
HS R++ GFT L+QIST ED+L+DT+ L I +L F +P + KV HGSD+D+ WL
Sbjct: 274 HHSYRTYQGFTCLMQISTRSEDFLIDTLLLRSHIHMLNQVFTNPSIVKVLHGSDSDIKWL 333
Query: 197 QRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQ 256
QRDF +Y+VN+FDT +A +L P SLA+LL+ YC + NK Q DWR R LP EM++
Sbjct: 334 QRDFGVYIVNMFDTGQASRILEYPSASLAFLLKFYCAIDANKKYQLADWRIRKLPEEMIK 393
Query: 257 YAQTDAHYLLYIAKCLVAELKQQGNEN----------SYCPDDKFN--FVLEASRRSNTV 304
YA+ D HYLLYI L EL +GN+N S + N +LE RRS +
Sbjct: 394 YAREDTHYLLYIYDRLRNELISKGNKNLGSSGTSTNTSTSTTTQLNNHLLLEVLRRSREL 453
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
L Y K+I + + F + LN Q S ++++ L WR+ +AR DES
Sbjct: 454 SLLRYEKDIL----DDNSHINFAKKLNLQ-----YSPTQLNVLKVLYHWREGLARDEDES 504
Query: 365 LRFVLSDQAIIALANKAPANRTDVYT 390
+R++L +Q ++ + + P + ++ T
Sbjct: 505 VRYILPNQMMLTIVERQPTSVQELLT 530
Score = 39 (18.8 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 48 KPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFDFSNV 99
+PQH F+ +N++ PF K +S + EL+ P+ E F +
Sbjct: 154 RPQHKFEDPFDNNNF-PF--LPKIRSKPNAMVELDEVFKKSIPK-EISFGKI 201
>UNIPROTKB|A7E323 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 CTD:5394 eggNOG:COG0349 HOGENOM:HOG000001579
HOVERGEN:HBG051524 KO:K12591 OrthoDB:EOG4X6C7P
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 EMBL:BC151674
IPI:IPI00904680 RefSeq:NP_001095656.1 UniGene:Bt.59475 SMR:A7E323
STRING:A7E323 Ensembl:ENSBTAT00000057296 GeneID:535340
KEGG:bta:535340 NextBio:20876706 Uniprot:A7E323
Length = 702
Score = 504 (182.5 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 125/318 (39%), Positives = 178/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P P+ + V + FV T +L EL
Sbjct: 250 EQDMFAHPYQYELDHFTPPDSVLQKPEPQL-YRPVG---ETPCHFV--STLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L K FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLAD 423
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + EL ++GNE P + V + RS +
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQ---PT-QLQVVWQ---RSRDI 476
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q + +T + L AWRD AR DES
Sbjct: 477 CLKKFIKPI--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 527
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 528 YGYVLPNHMMLKIAEELP 545
>ZFIN|ZDB-GENE-040426-781 [details] [associations]
symbol:exosc10 "exosome component 10" species:7955
"Danio rerio" [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
ZFIN:ZDB-GENE-040426-781 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
CTD:5394 KO:K12591 OMA:GNKSMSF GeneTree:ENSGT00390000015408
EMBL:CR318666 IPI:IPI00860469 RefSeq:NP_957383.2 UniGene:Dr.75500
Ensembl:ENSDART00000137410 GeneID:394064 KEGG:dre:394064
NextBio:20815021 ArrayExpress:F1Q5Q7 Bgee:F1Q5Q7 Uniprot:F1Q5Q7
Length = 899
Score = 501 (181.4 bits), Expect = 7.2e-45, P = 7.2e-45
Identities = 120/312 (38%), Positives = 174/312 (55%)
Query: 76 SHPYELEITALL--ENPR--PEFD-FSNVDLDLQRSDSFVWVETKSQLNELANALSKEFF 130
SHPY+ E+ L+ EN + PE + +D + F+ T L L L+K
Sbjct: 253 SHPYQYELDHLVMPENLKCKPEVQMYKPID---ETPCQFI--STLEDLVALNEKLAKTTE 307
Query: 131 FAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSD 190
FAVD E HS RSFLG T L+QIST +ED+++DT+ L E+ IL F DP + KVFHG+D
Sbjct: 308 FAVDLEHHSYRSFLGITCLMQISTREEDFIIDTLELRSEMYILNETFTDPAIVKVFHGAD 367
Query: 191 NDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPL 250
+D+ WLQ+DF +YVVN+FDT A L+ + SL +LL+ YC V+++K Q DWR RPL
Sbjct: 368 SDIEWLQKDFGLYVVNMFDTHHAARCLNLGRNSLDHLLKVYCDVSSDKRYQLADWRIRPL 427
Query: 251 PAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYT 310
P EML+YAQ D HYLLY+ + A+L GN + + + +S + L+ Y
Sbjct: 428 PDEMLKYAQADTHYLLYVYDRVRADLFDGGNGQA-------TLIQQVWTKSRDLSLKKYV 480
Query: 311 KEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLS 370
K I + + L Q S ++ R + AWRD +AR DES ++L
Sbjct: 481 KPIFT-------EDSYMELYRKQK--KSFNTQQLAAFRLMYAWRDKLAREEDESTGYILP 531
Query: 371 DQAIIALANKAP 382
+ ++ +A++ P
Sbjct: 532 NHMMMKIADELP 543
>UNIPROTKB|B4DKG8 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 EMBL:AL109811 UniGene:Hs.632368 HGNC:HGNC:9138
HOVERGEN:HBG051524 ChiTaRS:EXOSC10 EMBL:AK296559 IPI:IPI01010048
SMR:B4DKG8 STRING:B4DKG8 Ensembl:ENST00000544779 Uniprot:B4DKG8
Length = 679
Score = 490 (177.5 bits), Expect = 7.3e-45, P = 7.3e-45
Identities = 119/318 (37%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ A+L+ P+P+ + ++ + F+ + +L EL
Sbjct: 250 EQDMFAHPYQYELNHFTPADAVLQKPQPQL-YRPIE---ETPCHFI--SSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLAD 423
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + E+ ++GN + V + RS +
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPV----QLQVVWQ---RSRDI 476
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q + +T + L AWRD AR DES
Sbjct: 477 CLKKFIKPI--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 527
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 528 YGYVLPNHMMLKIAEELP 545
>MGI|MGI:1355322 [details] [associations]
symbol:Exosc10 "exosome component 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=ISO] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004532 "exoribonuclease activity" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=ISO] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0071028 "nuclear
mRNA surveillance" evidence=ISO] [GO:0071034 "CUT catabolic
process" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
[GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of
transcription" evidence=ISO] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 MGI:MGI:1355322 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
GO:GO:0008408 GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819
GO:GO:0009048 GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394
eggNOG:COG0349 HOGENOM:HOG000001579 HOVERGEN:HBG051524 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P ChiTaRS:EXOSC10 GO:GO:0004532
GO:GO:0071048 EMBL:AF091392 EMBL:AF091505 EMBL:AF091506
EMBL:AF092074 EMBL:AF092075 EMBL:AF092076 EMBL:AF092077
EMBL:AF092078 EMBL:AF092079 EMBL:AF092080 EMBL:AF092081
EMBL:AF092082 EMBL:AF092083 EMBL:AL606969 EMBL:AL713995
IPI:IPI00342382 RefSeq:NP_057908.2 UniGene:Mm.266635
ProteinModelPortal:P56960 SMR:P56960 STRING:P56960
PhosphoSite:P56960 PaxDb:P56960 PRIDE:P56960
Ensembl:ENSMUST00000017408 GeneID:50912 KEGG:mmu:50912
GeneTree:ENSGT00390000015408 InParanoid:B1ARY9 NextBio:307899
Bgee:P56960 CleanEx:MM_EXOSC10 Genevestigator:P56960
GermOnline:ENSMUSG00000017264 Uniprot:P56960
Length = 887
Score = 496 (179.7 bits), Expect = 2.5e-44, P = 2.5e-44
Identities = 122/316 (38%), Positives = 172/316 (54%)
Query: 71 EKSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFF 130
E+ +HPY+ E+ P P+ L R+ S L+EL L+++
Sbjct: 250 EQDMFAHPYQYELDHF--TP-PQSVLQRPKPQLYRAVGETPCHLVSSLDELVE-LNEKLL 305
Query: 131 ----FAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVF 186
FAVD E HS RSFLG T L+QIST ED++VDT+ L ++ IL DP + KVF
Sbjct: 306 GCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPAIVKVF 365
Query: 187 HGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWR 246
HG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL YCGV +NK Q DWR
Sbjct: 366 HGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWR 425
Query: 247 QRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCL 306
RPLP EML YA+ D HYLLYI + EL ++GN + V + RS +CL
Sbjct: 426 IRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNHQPV----QLQVVWQ---RSRDICL 478
Query: 307 QVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLR 366
+ + K I + E+ + L Q ++S + L AWRD AR DES
Sbjct: 479 KKFVKPI--FTDES-----YLELYRKQK--KHLNSQQLTAFQLLFAWRDKTARREDESYG 529
Query: 367 FVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 530 YVLPNHMMLKIAEELP 545
>MGI|MGI:1922485 [details] [associations]
symbol:Exd2 "exonuclease 3'-5' domain containing 2"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 MGI:MGI:1922485 GO:GO:0003676
GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
eggNOG:NOG68878 OrthoDB:EOG4GTKD1 EMBL:BC018508 IPI:IPI00124568
UniGene:Mm.206631 ProteinModelPortal:Q8VEG4 SMR:Q8VEG4
STRING:Q8VEG4 PhosphoSite:Q8VEG4 PaxDb:Q8VEG4 PRIDE:Q8VEG4
InParanoid:Q8VEG4 Bgee:Q8VEG4 CleanEx:MM_EXDL2
Genevestigator:Q8VEG4 GermOnline:ENSMUSG00000032705 Uniprot:Q8VEG4
Length = 496
Score = 365 (133.5 bits), Expect = 3.1e-44, Sum P(3) = 3.1e-44
Identities = 73/189 (38%), Positives = 109/189 (57%)
Query: 481 GVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKL 540
G R K + L V + KSP+Y NC + A DG+ LC CDR+K +WYL + + +L
Sbjct: 203 GNNQGRDPRKHKRKPLGVGYSARKSPLYDNCFLQAPDGQPLCTCDRRKAQWYLDKGIGEL 262
Query: 541 VEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQ 600
V P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R IIP YR HFP +
Sbjct: 263 VSKEPFVVRLQFEPAGRPESPG-DYYLMVKENLCVVCGKTDTYIRKNIIPHEYRKHFPIE 321
Query: 601 LKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKVADSRKAEARPGF 656
+K H SHD++LLC CH +++ K+Q++ EF P+ + + D + + R G
Sbjct: 322 MKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDLERRQVRSGA 381
Query: 657 SASITNFEA 665
A + N E+
Sbjct: 382 RA-LLNAES 389
Score = 90 (36.7 bits), Expect = 3.1e-44, Sum P(3) = 3.1e-44
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
PHG +VV + + E G+R Q RWRQ F++++ P LP W V H
Sbjct: 433 PHGLKVV----QRHTEGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDH 478
Score = 68 (29.0 bits), Expect = 3.1e-44, Sum P(3) = 3.1e-44
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P++R+EEL + +Y I++E L A
Sbjct: 376 QVRSGARALLN-AESLPAHRKEELLHALREFYNTDIITEEMLHEA 419
>UNIPROTKB|F1RHR9 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591 OMA:GNKSMSF
GO:GO:0004532 GO:GO:0071048 GeneTree:ENSGT00390000015408
EMBL:CU694468 RefSeq:XP_003127631.2 UniGene:Ssc.23524
Ensembl:ENSSSCT00000003785 GeneID:100511264 KEGG:ssc:100511264
Uniprot:F1RHR9
Length = 886
Score = 494 (179.0 bits), Expect = 4.1e-44, P = 4.1e-44
Identities = 123/318 (38%), Positives = 178/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P P+ + V+ + FV + +L EL
Sbjct: 250 EQDMFAHPYQYELDHFTPPESVLQKPEPQL-YRPVE---ETPCHFV--SSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L K FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLAD 423
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + L ++GNE P + V + RS +
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLALWERGNEQ---PA-QLQVVWQ---RSRDI 476
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q + +T + L AWRD AR DES
Sbjct: 477 CLKKFIKPI--FTDES-----YLDLYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 527
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 528 YGYVLPNHMMLKIAEELP 545
>CGD|CAL0000608 [details] [associations]
symbol:RRP6 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0071036 "nuclear polyadenylation-dependent snoRNA
catabolic process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071037 "nuclear polyadenylation-dependent snRNA catabolic
process" evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 483 (175.1 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 118/323 (36%), Positives = 176/323 (54%)
Query: 76 SHPYELEITALLENPRPEFDFSNVDLDLQRSDSF---VWVETKSQLNELANALSKEFFFA 132
+ PYE EI P P+ + D + S +WV+T +L ++ L K A
Sbjct: 199 AQPYEYEID---NQPYPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIA 255
Query: 133 VDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDND 192
VD E H RS+ G L+QIS ++D+++DT+AL D++++L FADP + KVFHG+ D
Sbjct: 256 VDLEHHDYRSYYGIVCLMQISNREQDWIIDTLALRDDLTVLNEVFADPDIVKVFHGAFMD 315
Query: 193 VMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPA 252
++WLQRD +YVV+LFDT A L P+ SLAYLLE Y T+K Q DWR RPL
Sbjct: 316 IIWLQRDLGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSP 375
Query: 253 EMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKE 312
ML YA++D H+LL+I +LK N +K + VL SR+ + YTK
Sbjct: 376 PMLAYARSDTHFLLFIYD----QLK-----NKLIDAEKLSQVLYDSRQVAKRRFE-YTKY 425
Query: 313 ---IESYPGEAAASSIFFRLLNGQGGVSSISSVT---QDLVRRLCAWRDLMARVHDESLR 366
++ + + F G + S +V + +V L WRDLMA+ DES+R
Sbjct: 426 RPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVR 485
Query: 367 FVLSDQAIIALAN-KAPANRTDV 388
+++ +Q +++LAN ++P + V
Sbjct: 486 YIMPNQLLVSLANLESPVDLNKV 508
Score = 53 (23.7 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 48 KPQHNFKRVLADNSYS-PFKHANKEKSSGSHPYELEITALLENPRPEFDFS 97
KPQ FK V DNS S PFK K P+ +L+ NP P ++ S
Sbjct: 144 KPQLKFK-VPIDNSESGPFKPKLSSKPHALVPFN---DSLI-NPEPVYEDS 189
>UNIPROTKB|Q59MB4 [details] [associations]
symbol:RRP6 "Likely nuclear exosome component Rrp6p"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00474 CGD:CAL0000608 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 GO:GO:0035690 SUPFAM:SSF53098
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AACQ01000231
RefSeq:XP_710869.1 ProteinModelPortal:Q59MB4 SMR:Q59MB4
STRING:Q59MB4 GeneID:3647535 KEGG:cal:CaO19.58 Uniprot:Q59MB4
Length = 786
Score = 483 (175.1 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 118/323 (36%), Positives = 176/323 (54%)
Query: 76 SHPYELEITALLENPRPEFDFSNVDLDLQRSDSF---VWVETKSQLNELANALSKEFFFA 132
+ PYE EI P P+ + D + S +WV+T +L ++ L K A
Sbjct: 199 AQPYEYEID---NQPYPDAILAKSDAIPPKDWSTTKAIWVDTVEELQKMVQELKKSTEIA 255
Query: 133 VDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDND 192
VD E H RS+ G L+QIS ++D+++DT+AL D++++L FADP + KVFHG+ D
Sbjct: 256 VDLEHHDYRSYYGIVCLMQISNREQDWIIDTLALRDDLTVLNEVFADPDIVKVFHGAFMD 315
Query: 193 VMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPA 252
++WLQRD +YVV+LFDT A L P+ SLAYLLE Y T+K Q DWR RPL
Sbjct: 316 IIWLQRDLGLYVVSLFDTFHASRALGFPRFSLAYLLEVYAHFKTSKQYQLADWRIRPLSP 375
Query: 253 EMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKE 312
ML YA++D H+LL+I +LK N +K + VL SR+ + YTK
Sbjct: 376 PMLAYARSDTHFLLFIYD----QLK-----NKLIDAEKLSQVLYDSRQVAKRRFE-YTKY 425
Query: 313 ---IESYPGEAAASSIFFRLLNGQGGVSSISSVT---QDLVRRLCAWRDLMARVHDESLR 366
++ + + F G + S +V + +V L WRDLMA+ DES+R
Sbjct: 426 RPMANTFSNKVTCPVMAFNPKEPWGSIVSQYNVPHFKRPVVEVLYKWRDLMAKKQDESVR 485
Query: 367 FVLSDQAIIALAN-KAPANRTDV 388
+++ +Q +++LAN ++P + V
Sbjct: 486 YIMPNQLLVSLANLESPVDLNKV 508
Score = 53 (23.7 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 48 KPQHNFKRVLADNSYS-PFKHANKEKSSGSHPYELEITALLENPRPEFDFS 97
KPQ FK V DNS S PFK K P+ +L+ NP P ++ S
Sbjct: 144 KPQLKFK-VPIDNSESGPFKPKLSSKPHALVPFN---DSLI-NPEPVYEDS 189
>UNIPROTKB|E1BMZ5 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071048 "nuclear retention of unspliced pre-mRNA at the
site of transcription" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0009048
"dosage compensation by inactivation of X chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408 GO:GO:0035327
GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460
GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:DAAA02042967 IPI:IPI00698678
Ensembl:ENSBTAT00000003354 ArrayExpress:E1BMZ5 Uniprot:E1BMZ5
Length = 890
Score = 493 (178.6 bits), Expect = 5.4e-44, P = 5.4e-44
Identities = 125/321 (38%), Positives = 178/321 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P P+ + V + FV T +L EL
Sbjct: 250 EQDMFAHPYQYELDHFTPPDSVLQKPEPQL-YRPVG---ETPCHFV--STLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L K FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLKCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLAD 423
Query: 245 WR---QRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRS 301
WR RPLP EML YA+ D HYLLYI + EL ++GNE P + V + RS
Sbjct: 424 WRIRNPRPLPEEMLSYARDDTHYLLYIYDKMRLELWERGNEQ---PT-QLQVVWQ---RS 476
Query: 302 NTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVH 361
+CL+ + K I + E+ + L Q + +T + L AWRD AR
Sbjct: 477 RDICLKKFIKPI--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARRE 527
Query: 362 DESLRFVLSDQAIIALANKAP 382
DES +VL + ++ +A + P
Sbjct: 528 DESYGYVLPNHMMLKIAEELP 548
>UNIPROTKB|F1PI20 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0000176 OMA:GNKSMSF
GeneTree:ENSGT00390000015408 EMBL:AAEX03001937
Ensembl:ENSCAFT00000026485 Uniprot:F1PI20
Length = 908
Score = 492 (178.3 bits), Expect = 7.6e-44, P = 7.6e-44
Identities = 122/318 (38%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P+P+ + V + FV + +L EL
Sbjct: 272 EQDMFAHPYQYELDHFTPPESVLQKPQPQL-YRPVG---ETPCHFV--SSLDELVELNEK 325
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED++VDT+ L ++ IL DP + K
Sbjct: 326 LLTCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDPTIVK 385
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 386 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCSVESNKQYQLAD 445
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + EL ++GNE + V + RS +
Sbjct: 446 WRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNEQPV----QLQVVWQ---RSRDI 498
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K + + E+ + L Q + +T + L AWRD AR DES
Sbjct: 499 CLKKFVKPL--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 549
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 550 YGYVLPNHMMLKIAEELP 567
>UNIPROTKB|Q01780 [details] [associations]
symbol:EXOSC10 "Exosome component 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IMP] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0071048 "nuclear retention of unspliced
pre-mRNA at the site of transcription" evidence=IMP] [GO:0035327
"transcriptionally active chromatin" evidence=IMP] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005737
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 EMBL:CH471130
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0000178 GO:GO:0071035
EMBL:AJ300188 GO:GO:0008408 GO:GO:0035327 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0009048 GO:GO:0000460 GO:GO:0000176
GO:GO:0071034 EMBL:X66113 EMBL:L01457 EMBL:AL109811 EMBL:BC039901
EMBL:BC073788 IPI:IPI00009464 IPI:IPI00220336 PIR:A43920 PIR:JH0796
RefSeq:NP_001001998.1 RefSeq:NP_002676.1 UniGene:Hs.632368 PDB:2CPR
PDB:3SAF PDB:3SAG PDB:3SAH PDBsum:2CPR PDBsum:3SAF PDBsum:3SAG
PDBsum:3SAH ProteinModelPortal:Q01780 SMR:Q01780 IntAct:Q01780
MINT:MINT-1143843 STRING:Q01780 PhosphoSite:Q01780 DMDM:8928564
SWISS-2DPAGE:Q01780 PaxDb:Q01780 PRIDE:Q01780 DNASU:5394
Ensembl:ENST00000304457 Ensembl:ENST00000376936 GeneID:5394
KEGG:hsa:5394 UCSC:uc001asa.3 UCSC:uc001asb.3 CTD:5394
GeneCards:GC01M011126 HGNC:HGNC:9138 HPA:HPA028470 HPA:HPA028484
MIM:605960 neXtProt:NX_Q01780 PharmGKB:PA33464 eggNOG:COG0349
HOGENOM:HOG000001579 HOVERGEN:HBG051524 InParanoid:Q01780 KO:K12591
OMA:GNKSMSF OrthoDB:EOG4X6C7P PhylomeDB:Q01780 ChiTaRS:EXOSC10
EvolutionaryTrace:Q01780 GenomeRNAi:5394 NextBio:20912
ArrayExpress:Q01780 Bgee:Q01780 CleanEx:HS_EXOSC10
Genevestigator:Q01780 GermOnline:ENSG00000171824 GO:GO:0004532
GO:GO:0071048 Uniprot:Q01780
Length = 885
Score = 490 (177.5 bits), Expect = 1.1e-43, P = 1.1e-43
Identities = 119/318 (37%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ A+L+ P+P+ + ++ + F+ + +L EL
Sbjct: 250 EQDMFAHPYQYELNHFTPADAVLQKPQPQL-YRPIE---ETPCHFI--SSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLAD 423
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + E+ ++GN + V + RS +
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPV----QLQVVWQ---RSRDI 476
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q + +T + L AWRD AR DES
Sbjct: 477 CLKKFIKPI--FTDES-----YLELYRKQKKHLNTQQLTA--FQLLFAWRDKTARREDES 527
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 528 YGYVLPNHMMLKIAEELP 545
>UNIPROTKB|E1C525 [details] [associations]
symbol:EXOSC10 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 CTD:5394 KO:K12591
OMA:GNKSMSF GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 EMBL:AADN02040751 IPI:IPI00588624
RefSeq:NP_001012748.1 UniGene:Gga.2286 ProteinModelPortal:E1C525
Ensembl:ENSGALT00000004879 GeneID:419454 KEGG:gga:419454
NextBio:20822508 Uniprot:E1C525
Length = 910
Score = 493 (178.6 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 118/318 (37%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ +L+ P P+ + + + ++ T +L EL
Sbjct: 268 EQDMFAHPYQYELEHFSPPDGVLKKPEPQM-YRPI-----KETPCHFITTLDELVELNEK 321
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FA+D E HS RSFLG T L+QIST ED+++DT+ L ++SIL F DP + K
Sbjct: 322 LMNCKEFALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMSILNETFTDPAIVK 381
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
V HG+D+DV WLQ+DF +Y+VN+FDT +A +L+ + SL +LL+ YC V +K Q D
Sbjct: 382 VLHGADSDVEWLQKDFGLYLVNMFDTHQAARLLNLGKHSLDHLLKLYCSVDADKQYQLAD 441
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EM+QYA+ D HYLLYI + L ++GNE P + V + RS +
Sbjct: 442 WRIRPLPEEMIQYARDDTHYLLYIYDKMREALWERGNEQ---PT-QLKVVWQ---RSRDI 494
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ Y K + + E+ + L Q +++ R L +WRD AR DES
Sbjct: 495 CLKKYIKPL--FSDES-----YLELYRRQK--KHLNTQQLAAFRLLFSWRDKTARQEDES 545
Query: 365 LRFVLSDQAIIALANKAP 382
+ +VL + ++ +A + P
Sbjct: 546 IGYVLPNHMLLKIAEELP 563
Score = 40 (19.1 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 456 FNYVLPAKNNWELKNQSNKF-----VYK-QNGVKV-SRQVAKKASRD 495
F LP++ N +QS KF +Y+ N K+ S+ +K SRD
Sbjct: 717 FRMYLPSEQNPAYVSQSAKFDPSSKIYEISNRWKLMSKTQVQKESRD 763
>DICTYBASE|DDB_G0278593 [details] [associations]
symbol:exdl2B "3'-5' exonuclease domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
dictyBase:DDB_G0278593 GenomeReviews:CM000152_GR EMBL:AAFI02000023
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
eggNOG:NOG68878 ProtClustDB:CLSZ2430753 RefSeq:XP_642107.2
ProteinModelPortal:Q54YU5 EnsemblProtists:DDB0238341 GeneID:8621318
KEGG:ddi:DDB_G0278593 OMA:ASKENIC Uniprot:Q54YU5
Length = 686
Score = 370 (135.3 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 85/274 (31%), Positives = 142/274 (51%)
Query: 467 ELKNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDR 526
+LKN+ N NG K ++ + K +Y NC +Y+ D LL +
Sbjct: 356 KLKNRENN----NNGNNNDNTNNKPIKENMLKKTVPDKRVLYDNCLMYSPDDVLLSSISK 411
Query: 527 KKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRY 586
KK+EWY++R LA ++++ P +I L F+P G G++FY+ SK+NICV CG + LR+
Sbjct: 412 KKVEWYVSRQLADIIKEEPLSIKLKFQPHGEGHS-GDQFYLASKENICVVCGSTHKILRH 470
Query: 587 RIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHK--- 643
++P CYR + PE++KSH SHD++L+C DCH + + K IS ++ +P+
Sbjct: 471 SMVPHCYRQYLPEEIKSHSSHDVILVCCDCHAILDKKNQIMKMIISQQYNVPIDNENKQF 530
Query: 644 VADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHG--PTMPSNRREELRRIVMRY 701
+ D + S NF + + + + + +P + EE+++IVM Y
Sbjct: 531 ITDHTLLKITQIASIVKNNFYSTGNNNNISEDNLIKGNKKCKKNIPDEKLEEMKKIVMEY 590
Query: 702 YGGREISQEDLERALLVGMSPRERRR----HAKK 731
G EI+ EDL+ L ++P+++ H KK
Sbjct: 591 IGKEEINVEDLDEILK--LNPKQKNENYIPHEKK 622
Score = 113 (44.8 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDV 910
PH K+V+D +L GE GI +F + WR+ FVE++ P FLP W +
Sbjct: 618 PHEKKVIDKVLA-MGEKGIFEFIRSWRKNFVESVQPKFLPEHWSI 661
Score = 93 (37.8 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 37/157 (23%), Positives = 67/157 (42%)
Query: 148 ALIQISTEKEDYLVDTIALHDEISI-LQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVN 206
ALIQ+S++ E +L+ ++ ++I I L+ DP + KV D + + F +
Sbjct: 195 ALIQLSSKNETFLIQ-VSQMEKIPISLEQILTDPRLIKVGVAVSQDAATIFQTFSVVTKG 253
Query: 207 LFDTAKACEVLSKPQKSLAYLLETYCGVATNKF--LQREDWRQRPLPAEMLQYAQTDAHY 264
D + + LA L V NK ++ W + L + + YA DA
Sbjct: 254 YVDLVPIARLTNYEGNGLASLALNVMNVTLNKSNKIRCGHWENKKLSNDQIHYAAADA-- 311
Query: 265 LLYIAKCLVAELKQQGNENSYC-PDDKFNFVLEASRR 300
++ + + E+ +NS P+DK + V R+
Sbjct: 312 --WVGR-EIFEIMFNTYKNSKTDPNDKKDLVYTLCRQ 345
Score = 39 (18.8 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 429 NVENLDDILLAN 440
NVE+LD+IL N
Sbjct: 597 NVEDLDEILKLN 608
>UNIPROTKB|D4A1X2 [details] [associations]
symbol:LOC100366273 "Protein LOC100366273" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004532 "exoribonuclease activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009048 "dosage compensation by inactivation of X
chromosome" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0071034 "CUT catabolic process"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=IEA] [GO:0071048 "nuclear retention of
unspliced pre-mRNA at the site of transcription" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00341 SMART:SM00474
RGD:2323986 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184 GO:GO:0000166
GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0071035 GO:GO:0008408
GO:GO:0035327 GO:GO:0071044 SUPFAM:SSF47819 GO:GO:0009048
GO:GO:0000460 GO:GO:0000176 GO:GO:0071034 OMA:GNKSMSF
OrthoDB:EOG4X6C7P GO:GO:0004532 GO:GO:0071048
GeneTree:ENSGT00390000015408 IPI:IPI00359630 PRIDE:D4A1X2
Ensembl:ENSRNOT00000014629 ArrayExpress:D4A1X2 Uniprot:D4A1X2
Length = 884
Score = 489 (177.2 bits), Expect = 8.4e-43, Sum P(2) = 8.4e-43
Identities = 123/318 (38%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P+P+ + V+ + V V + +L EL
Sbjct: 250 EQDVFAHPYQYELDHFTPPPSVLQRPQPQL-YRPVE----ETPCHV-VSSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED +VDT+ L ++ IL DP + K
Sbjct: 304 LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDTLELRSDMYILNESLTDPAIVK 362
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL YCGV +NK Q D
Sbjct: 363 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLAD 422
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + EL ++GN+ + V + RS +
Sbjct: 423 WRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPV----QLQVVWQ---RSRDI 475
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q ++S + L AWRD AR DES
Sbjct: 476 CLKKFVKPI--FTDES-----YLELYRKQK--KHLNSQQLTAFQLLFAWRDKTARREDES 526
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 527 YGYVLPNHMMLKIAEELP 544
Score = 39 (18.8 bits), Expect = 8.4e-43, Sum P(2) = 8.4e-43
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 424 RQVCNNVENLDDILLANLQKCLGPNGSCPLSVFNYVLPAKNNWELKNQSNKFVYKQNGVK 483
+ + + EN + L +L+ + + + + N W+L +Q K + K
Sbjct: 681 QSIMESFENPFRMFLPSLENKAHISQAAKFDPSSKIYEISNRWKLASQVQKEPKEAAKKK 740
Query: 484 VSRQVAKK 491
V+ Q A +
Sbjct: 741 VAEQTAAR 748
>RGD|2323986 [details] [associations]
symbol:LOC100366273 "rCG30986-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 RGD:2323986 GO:GO:0000166 GO:GO:0003676
GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0000176 GeneTree:ENSGT00390000015408 IPI:IPI00211602
ProteinModelPortal:D4A2C3 Ensembl:ENSRNOT00000014593
ArrayExpress:D4A2C3 Uniprot:D4A2C3
Length = 859
Score = 489 (177.2 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 123/318 (38%), Positives = 177/318 (55%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P+P+ + V+ + V V + +L EL
Sbjct: 250 EQDVFAHPYQYELDHFTPPPSVLQRPQPQL-YRPVE----ETPCHV-VSSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED +VDT+ L ++ IL DP + K
Sbjct: 304 LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTED-IVDTLELRSDMYILNESLTDPAIVK 362
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL YCGV +NK Q D
Sbjct: 363 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQYQLAD 422
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + EL ++GN+ + V + RS +
Sbjct: 423 WRIRPLPEEMLNYARDDTHYLLYIYDRMRLELWERGNDQPV----QLQVVWQ---RSRDI 475
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
CL+ + K I + E+ + L Q ++S + L AWRD AR DES
Sbjct: 476 CLKKFVKPI--FTDES-----YLELYRKQK--KHLNSQQLTAFQLLFAWRDKTARREDES 526
Query: 365 LRFVLSDQAIIALANKAP 382
+VL + ++ +A + P
Sbjct: 527 YGYVLPNHMMLKIAEELP 544
Score = 37 (18.1 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 464 NNWELKNQSNKFVYKQNGVKVSRQVAKK 491
N W+L +Q K + KV+ Q A +
Sbjct: 696 NRWKLASQVQKEPKEAAKKKVAEQTAAR 723
>SGD|S000005527 [details] [associations]
symbol:RRP6 "Nuclear exosome exonuclease component"
species:4932 "Saccharomyces cerevisiae" [GO:0034475 "U4 snRNA
3'-end processing" evidence=IGI;IMP] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA;IDA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IMP] [GO:0071049 "nuclear retention of pre-mRNA with
aberrant 3'-ends at the site of transcription" evidence=IGI]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IGI;IMP] [GO:0071037 "nuclear
polyadenylation-dependent snRNA catabolic process" evidence=IMP]
[GO:0071040 "nuclear polyadenylation-dependent antisense transcript
catabolic process" evidence=IMP] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IMP] [GO:0071036 "nuclear
polyadenylation-dependent snoRNA catabolic process" evidence=IMP]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IGI;IMP] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000973
"posttranscriptional tethering of RNA polymerase II gene DNA at
nuclear periphery" evidence=IMP] [GO:0071033 "nuclear retention of
pre-mRNA at the site of transcription" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 SGD:S000005527
GO:GO:0005730 EMBL:BK006948 GO:GO:0000166 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0071039 GO:GO:0071035 GO:GO:0071036
GO:GO:0071037 GO:GO:0071038 EMBL:U43491 GO:GO:0071044
SUPFAM:SSF47819 GO:GO:0000176 GO:GO:0000175 GO:GO:0000467
GO:GO:0071042 GO:GO:0071051 eggNOG:COG0349 KO:K12591
GeneTree:ENSGT00390000015408 GO:GO:0000973 GO:GO:0034475
GO:GO:0034476 GO:GO:0071049 GO:GO:0071040 GO:GO:0034473 OMA:YGIVCLM
OrthoDB:EOG4SJ8P0 EMBL:Z74909 EMBL:AY692850 PIR:S61984
RefSeq:NP_014643.1 PDB:1M0Y PDB:2HBJ PDB:2HBK PDB:2HBL PDB:2HBM
PDBsum:1M0Y PDBsum:2HBJ PDBsum:2HBK PDBsum:2HBL PDBsum:2HBM
ProteinModelPortal:Q12149 SMR:Q12149 DIP:DIP-4560N IntAct:Q12149
MINT:MINT-534618 STRING:Q12149 PaxDb:Q12149 EnsemblFungi:YOR001W
GeneID:854162 KEGG:sce:YOR001W CYGD:YOR001w HOGENOM:HOG000196525
EvolutionaryTrace:Q12149 NextBio:975938 Genevestigator:Q12149
GermOnline:YOR001W Uniprot:Q12149
Length = 733
Score = 454 (164.9 bits), Expect = 5.0e-40, P = 5.0e-40
Identities = 120/320 (37%), Positives = 163/320 (50%)
Query: 77 HPYELEITALLENPRPEFDFSNVDLDLQRSDSFV--WVETKSQLNELANALSKEFFFAVD 134
HPYE EI + PE ++ + D V WV+T ++L + L AVD
Sbjct: 181 HPYEYEIDH--QEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVD 238
Query: 135 TEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVM 194
E H RS+ G L+QIST + DYLVDT+ L + + IL F +P + KVFHG+ D++
Sbjct: 239 LEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDII 298
Query: 195 WLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEM 254
WLQRD +YVV LFDT A + + P+ SLAYLLE + T+K Q DWR RPL M
Sbjct: 299 WLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPM 358
Query: 255 LQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIE 314
YA+ D H+LL I L +L + + + N A RR + T E
Sbjct: 359 TAYARADTHFLLNIYDQLRNKLIESNKLAGVLYESR-NV---AKRRFEYSKYRPLTPSSE 414
Query: 315 SY-PGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQA 373
Y P E + +++L Q + V LVR L WRDL+AR DES RFV+ +Q
Sbjct: 415 VYSPIEKESP---WKILMYQYNIPPEREV---LVRELYQWRDLIARRDDESPRFVMPNQL 468
Query: 374 IIALANKAPANRTDVYTTIA 393
+ AL P TDV ++
Sbjct: 469 LAALVAYTP---TDVIGVVS 485
>UNIPROTKB|F1S4B8 [details] [associations]
symbol:EXD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 CTD:55218 OMA:QVIYAAR
GeneTree:ENSGT00390000014318 EMBL:CU468204 EMBL:CU633187
RefSeq:XP_001925126.4 Ensembl:ENSSSCT00000002567 GeneID:100155300
KEGG:ssc:100155300 Uniprot:F1S4B8
Length = 624
Score = 382 (139.5 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 73/197 (37%), Positives = 115/197 (58%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G R K + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 319 RNKKSKTDGAMPGTHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 378
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV ++P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R +
Sbjct: 379 AQWYLDKGIGELVSEDPFVVKLQFEPAGRPESPG-DYYLMVKENLCVVCGKKDSYIRKNV 437
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKV 644
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+ + +
Sbjct: 438 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYHDNHLKQQLAREFQAPIGSEEGLRLL 497
Query: 645 ADSRKAEARPGFSASIT 661
D + + R G A +T
Sbjct: 498 EDPERRQVRSGARALLT 514
Score = 90 (36.7 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 857 SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
+++S + PHG +VV + + G+R Q RWRQ F++++ P LP W V H
Sbjct: 552 TRISNENYVPHGLKVVQC----HSQGGLRSLMQLESRWRQHFLDSMQPRHLPQQWSVDH 606
Score = 67 (28.6 bits), Expect = 5.2e-40, Sum P(3) = 5.2e-40
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL ++P++R+EEL + + +Y ++++ L+ A
Sbjct: 504 QVRSGARALLT-AESLPAHRKEELLQALREFYHTHSVTEQMLQEA 547
Score = 38 (18.4 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 875 LLREYGED 882
LLR+YGED
Sbjct: 611 LLRKYGED 618
>UNIPROTKB|E2QXX4 [details] [associations]
symbol:EXD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 CTD:55218 OMA:QVIYAAR
GeneTree:ENSGT00390000014318 EMBL:AAEX03005807 RefSeq:XP_547872.2
Ensembl:ENSCAFT00000026226 GeneID:490750 KEGG:cfa:490750
Uniprot:E2QXX4
Length = 623
Score = 373 (136.4 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 73/201 (36%), Positives = 116/201 (57%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G R + + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 318 RNKKSKMDGTMLGNHQGRDPRRHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 377
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV + P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R +
Sbjct: 378 AQWYLDKGIGELVSEEPFVVKLQFEPAGRPESPG-DYYLMVKENLCVVCGKKDSYIRKNV 436
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKV 644
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+ + +
Sbjct: 437 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAREFQAPIGSEEGLRLL 496
Query: 645 ADSRKAEARPGFSASITNFEA 665
D + + R G A + N E+
Sbjct: 497 EDPERRQVRSGARA-LLNAES 516
Score = 94 (38.1 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 857 SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
+++S + PHG +VV + + G+R Q RWRQ F++++ P +LP W V H
Sbjct: 551 TRISNENYVPHGLKVVQC----HSQGGLRSLMQLESRWRQHFLDSMQPRYLPQQWSVDH 605
Score = 70 (29.7 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P++R+EEL + + +Y ++ E L+ A
Sbjct: 503 QVRSGARALLN-AESLPAHRKEELLQALREFYNTDTVTDEMLQEA 546
Score = 38 (18.4 bits), Expect = 8.2e-34, Sum P(3) = 8.2e-34
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 875 LLREYGED 882
LLR+YGED
Sbjct: 610 LLRKYGED 617
>UNIPROTKB|Q9NVH0 [details] [associations]
symbol:EXD2 "Exonuclease 3'-5' domain-containing protein 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 EMBL:CH471061
GO:GO:0003676 GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AK001600 EMBL:AK295601 EMBL:AL834434
EMBL:BX647767 EMBL:AL359317 EMBL:BC001962 IPI:IPI00465113
IPI:IPI00915852 RefSeq:NP_001180289.1 RefSeq:NP_001180290.1
RefSeq:NP_001180291.1 RefSeq:NP_001180292.1 RefSeq:NP_060669.1
UniGene:Hs.533878 ProteinModelPortal:Q9NVH0 STRING:Q9NVH0
PhosphoSite:Q9NVH0 DMDM:37999798 PaxDb:Q9NVH0 PRIDE:Q9NVH0
DNASU:55218 Ensembl:ENST00000312994 Ensembl:ENST00000409014
Ensembl:ENST00000409018 Ensembl:ENST00000409242
Ensembl:ENST00000409675 Ensembl:ENST00000409949
Ensembl:ENST00000449989 GeneID:55218 KEGG:hsa:55218 UCSC:uc001xkt.3
CTD:55218 GeneCards:GC14P069658 HGNC:HGNC:20217 HPA:HPA002906
HPA:HPA005848 neXtProt:NX_Q9NVH0 PharmGKB:PA164719421
eggNOG:NOG68878 HOGENOM:HOG000046597 InParanoid:Q9NVH0 OMA:QVIYAAR
OrthoDB:EOG4GTKD1 ChiTaRS:EXD2 GenomeRNAi:55218 NextBio:59188
ArrayExpress:Q9NVH0 Bgee:Q9NVH0 CleanEx:HS_EXDL2
Genevestigator:Q9NVH0 GermOnline:ENSG00000081177 Uniprot:Q9NVH0
Length = 621
Score = 375 (137.1 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 74/201 (36%), Positives = 116/201 (57%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G R K + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 316 RNKKSKMDGMVPGNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 375
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV + P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R +
Sbjct: 376 AQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPG-DYYLMVKENLCVVCGKRDSYIRKNV 434
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKV 644
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+ + +
Sbjct: 435 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLL 494
Query: 645 ADSRKAEARPGFSASITNFEA 665
D + + R G A + N E+
Sbjct: 495 EDPERRQVRSGARA-LLNAES 514
Score = 89 (36.4 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 857 SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
+++S + PHG +VV + + G+R Q RWRQ F++++ P LP W V H
Sbjct: 549 TRISNENYVPHGLKVVQC----HSQGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDH 603
Score = 70 (29.7 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P+ R+EEL + + +Y +++E L+ A
Sbjct: 501 QVRSGARALLN-AESLPTQRKEELLQALREFYNTDVVTEEMLQEA 544
>WB|WBGene00000796 [details] [associations]
symbol:crn-3 species:6239 "Caenorhabditis elegans"
[GO:0006396 "RNA processing" evidence=IEA;TAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0043277 "apoptotic cell
clearance" evidence=IDA] [GO:0000178 "exosome (RNase complex)"
evidence=TAS] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0006309 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176
GO:GO:0043277 EMBL:Z49909 KO:K12591 GeneTree:ENSGT00390000015408
EMBL:AY303577 PIR:T19246 RefSeq:NP_496283.1 UniGene:Cel.7455
ProteinModelPortal:G5EBX6 SMR:G5EBX6 PRIDE:G5EBX6
EnsemblMetazoa:C14A4.4a GeneID:3565889 KEGG:cel:CELE_C14A4.4
CTD:3565889 WormBase:C14A4.4a OMA:TEEEHPY NextBio:958247
Uniprot:G5EBX6
Length = 876
Score = 417 (151.9 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 96/240 (40%), Positives = 132/240 (55%)
Query: 77 HPYELEITALLENPRPEFDFSNVD---LDLQRSDSFVWVETKSQLNELANALSKEFFFAV 133
HPY EI L PE + + + ++TK +L L L+ FAV
Sbjct: 246 HPYIAEI---LHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEFAV 302
Query: 134 DTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDV 193
D E H +RS+LG T LIQIST ED+++D + D + +L FA+P + KVFHGSD+DV
Sbjct: 303 DLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDSDV 362
Query: 194 MWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAE 253
+WLQRD+ ++VVNLFDT A + L P+ SLAYL + V +K Q DWR RPL
Sbjct: 363 LWLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNA 422
Query: 254 MLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEI 313
M+ YA+ D HYLLY L +L +Q + D N E+S +C++VY K +
Sbjct: 423 MINYAREDTHYLLYSYDMLREQLLKQDTK------DLANVYSESS----DLCIKVYKKPV 472
Score = 84 (34.6 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 301 SNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARV 360
S+ +C++VY K + + G + I FR ++++ + L WRD++AR
Sbjct: 460 SSDLCIKVYKKPVFNPKGYL--TEIKFRF--------TLNTRQDYALTHLFKWRDVVARA 509
Query: 361 HDESLRFVLSDQAIIALANKAPANRTDVY 389
DES FVL + +++L+ P + +Y
Sbjct: 510 EDESPHFVLPNHMMLSLSETLPRDVGGIY 538
>ZFIN|ZDB-GENE-030131-6387 [details] [associations]
symbol:exd2 "exonuclease 3'-5' domain containing
2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
ZFIN:ZDB-GENE-030131-6387 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 OMA:QVIYAAR
GeneTree:ENSGT00390000014318 EMBL:CU302376 IPI:IPI00886631
Ensembl:ENSDART00000111389 ArrayExpress:F1QBW6 Bgee:F1QBW6
Uniprot:F1QBW6
Length = 617
Score = 387 (141.3 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 79/213 (37%), Positives = 124/213 (58%)
Query: 504 KSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGN 563
KSP+Y NC ++A DG+ LC CD+KK +WYL + + +LV ++P + LLFEP GRP+ E
Sbjct: 345 KSPLYDNCFLHAPDGQPLCTCDKKKAKWYLEKGIGELVSEDPFIVRLLFEPSGRPDSE-K 403
Query: 564 EFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAA 623
++Y+ +K+N+CV CG+ + Y+R I+P YR HFP ++K H SHDI+LLC CH ++
Sbjct: 404 DYYLTAKENLCVVCGKVDSYIRKNIVPHEYRRHFPSEMKDHNSHDILLLCTACHAASNVH 463
Query: 624 AEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASITNFEAGVSPLQLRTAAMALLHHG 683
K +++ E P G + E ++R+AA ALL
Sbjct: 464 DGALKAELAEEHAAP---------------QGCEEGVRLLE-DADRRRVRSAARALLSAS 507
Query: 684 PTMPSNRREELRRIVMRYY-GGREISQEDLERA 715
MP+ R+EEL ++ + G++++QE L+ A
Sbjct: 508 DGMPTARKEELLSVIQSCFCNGQQVTQEVLQDA 540
Score = 91 (37.1 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 839 CENSSVQNGFGSSSPTPNSKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVF 895
C V + +++S + PHG +VV + Y E G+R + RWRQ F
Sbjct: 527 CNGQQVTQEVLQDAAALETRISNENYVPHGLKVV----QAYAEQGLRGLMELECRWRQHF 582
Query: 896 VEALHPHFLPAGWDVMH 912
+ ++ P LP W V H
Sbjct: 583 LTSMQPRHLPPLWCVNH 599
Score = 50 (22.7 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 223 SLAYLLETYCGVATNKF--LQREDWRQRPLPAEMLQYAQTDA 262
SL L E V +K L+ DW L E + YA DA
Sbjct: 211 SLKSLAEDLLNVTLDKSVELRCSDWEAEELSPEQITYAARDA 252
Score = 37 (18.1 bits), Expect = 1.8e-33, Sum P(3) = 1.8e-33
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 873 DYLLREYGED 882
D LR+YGED
Sbjct: 602 DKYLRKYGED 611
>UNIPROTKB|E1BEQ0 [details] [associations]
symbol:EXD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 CTD:55218 OMA:QVIYAAR
GeneTree:ENSGT00390000014318 EMBL:DAAA02029492 IPI:IPI00714556
RefSeq:XP_002691029.1 RefSeq:XP_587937.2 ProteinModelPortal:E1BEQ0
Ensembl:ENSBTAT00000013255 GeneID:539532 KEGG:bta:539532
NextBio:20878052 Uniprot:E1BEQ0
Length = 628
Score = 374 (136.7 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 74/201 (36%), Positives = 117/201 (58%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G + R K + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 323 RNKKSKADGMMPGNQQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 382
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV + P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R +
Sbjct: 383 AQWYLDKGIGELVSEEPFVVKLQFEPAGRPESPG-DYYLMVKENLCVVCGKKDSYIRKNV 441
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKV 644
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+ + +
Sbjct: 442 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDIHLKQQLAREFQAPIGSEEGLRLL 501
Query: 645 ADSRKAEARPGFSASITNFEA 665
D + + R G A + N E+
Sbjct: 502 EDPERRQVRSGARA-LLNAES 521
Score = 90 (36.7 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 857 SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
+++S + PHG +VV + + + G+R Q RWRQ F++++ P LP W V H
Sbjct: 556 TRISNENYIPHGLKVV----QRHTQGGLRSLMQLESRWRQHFLDSMQPRHLPQQWSVDH 610
Score = 68 (29.0 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P++R+EEL + + +Y +++E L+ A
Sbjct: 508 QVRSGARALLN-AESLPAHRKEELLQGLREFYRTDRVTEEMLQEA 551
Score = 38 (18.4 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 875 LLREYGED 882
LLR+YGED
Sbjct: 615 LLRKYGED 622
>DICTYBASE|DDB_G0278079 [details] [associations]
symbol:exdl2A "3'-5' exonuclease domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0004527
"exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
dictyBase:DDB_G0278079 GenomeReviews:CM000152_GR EMBL:AAFI02000023
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
eggNOG:NOG68878 RefSeq:XP_642108.1 ProteinModelPortal:Q54YU4
EnsemblProtists:DDB0238340 GeneID:8621319 KEGG:ddi:DDB_G0278079
OMA:RCSHWEN ProtClustDB:CLSZ2430753 Uniprot:Q54YU4
Length = 718
Score = 333 (122.3 bits), Expect = 4.7e-39, Sum P(4) = 4.7e-39
Identities = 56/136 (41%), Positives = 89/136 (65%)
Query: 504 KSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGN 563
K +Y NC +Y+ D LLC +KK+EWY++R LA ++++ P +I L F+P G G+
Sbjct: 413 KRVLYDNCLMYSPDDVLLCSISKKKVEWYVSRQLADIIKEEPLSIKLKFQPHGEGHS-GD 471
Query: 564 EFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAA 623
++Y+ K+NICV CG + LR+ ++P CYR + PE++KSH SHD++LLC DCH
Sbjct: 472 DYYLAHKENICVVCGSTHKILRHSVVPHCYRQYLPEEIKSHSSHDVLLLCCDCHANMDKR 531
Query: 624 AEKYKKQISAEFGIPL 639
A+ + I+ ++ +PL
Sbjct: 532 AQIMRMMIAKQYNVPL 547
Score = 101 (40.6 bits), Expect = 4.7e-39, Sum P(4) = 4.7e-39
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDV 910
PH KQV++ +L GE GI +F + WR+ F+E + P FL W +
Sbjct: 654 PHEKQVMEKVLA-LGEKGIFEFIRSWRKNFIETVQPKFLSQHWSI 697
Score = 89 (36.4 bits), Expect = 4.7e-39, Sum P(4) = 4.7e-39
Identities = 26/117 (22%), Positives = 46/117 (39%)
Query: 148 ALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNL 207
ALIQ+S++ E +L+ + + L+ DP + KV D + + F +
Sbjct: 225 ALIQLSSKNETFLIQVSQMEKIPTSLEQILTDPRLIKVGVAVSQDAATIFQTFSVVTKGC 284
Query: 208 FDTAKACEVLSKPQKSLAYLLETYCGVATNK--FLQREDWRQRPLPAEMLQYAQTDA 262
D + + LA L V +K ++ W + L + + YA DA
Sbjct: 285 VDLVPIARLTNYEGNGLASLALNVMNVTLDKSNLIRCSHWENKDLTNDQIHYAAADA 341
Score = 60 (26.2 bits), Expect = 4.7e-39, Sum P(4) = 4.7e-39
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 686 MPSNRREELRRIVMRYYGGREISQEDLERALLVGMSPRERRRH 728
+P + EE++ V Y G +EI +DL++ L+ ++P+++ +
Sbjct: 611 IPEYKLEEMKVEVANYIGKKEIDLKDLDQ--LIYLNPKQKNEN 651
>UNIPROTKB|Q95Z10 [details] [associations]
symbol:RRP6 "Rrp6p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612
Pfam:PF08066 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0000178
GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0000176 EMBL:AJ309000
ProteinModelPortal:Q95Z10 IntAct:Q95Z10 STRING:Q95Z10
EuPathDB:TriTrypDB:Tb427.04.1630 EuPathDB:TriTrypDB:Tb927.4.1630
Uniprot:Q95Z10
Length = 703
Score = 442 (160.7 bits), Expect = 8.7e-39, P = 8.7e-39
Identities = 116/349 (33%), Positives = 171/349 (48%)
Query: 48 KPQHNFKRVLADNSYSPFKHANKEKSS-------GSHPYELEITALLENPRPEFDFSNVD 100
+PQ F+ + DNS +PF+ ++ G HP+ I A+ P +
Sbjct: 146 RPQLTFEHPV-DNSPTPFRPVYYDEKGVRHVGEPGVHPFAERIKAV-SVPSEQLLLKTET 203
Query: 101 LDLQR-SDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDY 159
L + +V+T L L L E AVD E H S+ GFT L+QIST +D+
Sbjct: 204 PYLSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDF 263
Query: 160 LVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSK 219
+VD + + + ++ P F P + KVFHG+ DV WLQ+DF +Y+VNLFDT+ A + L
Sbjct: 264 IVDCLKVRANMYLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIALQNLHM 323
Query: 220 PQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQ 279
P SLA+ ++ +C V NK Q DWR RP+PAEM+ YAQ D H+LLY+ LKQ
Sbjct: 324 PH-SLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYD----RLKQL 378
Query: 280 GNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSI 339
N N +L + S + L+ Y K + R L G +
Sbjct: 379 -LLNCEARASVGNMLLHVFQESRLLSLERYEKP--HLDPDVTYKQALGRSLGG------L 429
Query: 340 SSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDV 388
SS + R + WRD+ AR D+S V+ ++++A K P + +V
Sbjct: 430 SSPQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEV 478
>ASPGD|ASPL0000094155 [details] [associations]
symbol:AN11773 species:162425 "Emericella nidulans"
[GO:0071036 "nuclear polyadenylation-dependent snoRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0000973 "posttranscriptional tethering of RNA
polymerase II gene DNA at nuclear periphery" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0071037
"nuclear polyadenylation-dependent snRNA catabolic process"
evidence=IEA] [GO:0071040 "nuclear polyadenylation-dependent
antisense transcript catabolic process" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IEA]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 InterPro:IPR012588 InterPro:IPR019465
Pfam:PF00570 Pfam:PF01612 Pfam:PF08066 Pfam:PF10392 PROSITE:PS50967
SMART:SM00474 GO:GO:0000166 GO:GO:0003676 GO:GO:0006396
SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0008408 EMBL:AACD01000084
SUPFAM:SSF47819 GO:GO:0000176 eggNOG:COG0349 KO:K12591
OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1 ProteinModelPortal:Q5B379
STRING:Q5B379 EnsemblFungi:CADANIAT00005393 GeneID:2872798
KEGG:ani:AN5001.2 Uniprot:Q5B379
Length = 1297
Score = 448 (162.8 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 118/366 (32%), Positives = 191/366 (52%)
Query: 37 PQYSCYLQSEPKPQHNFKRVLADNSYS--PFKHA---NKEKSSGS-HPYELEITALLENP 90
PQ Q +P F+ +L ++ P + + + + GS +PYE EI A + P
Sbjct: 152 PQLQFEHQVDPTDTSPFRPLLKTKPHAIEPLEQSLTPSIDAPHGSRNPYETEIRAA-KYP 210
Query: 91 RPEFDFSN-VDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTAL 149
+ S +D + + +V+T + E+ L A+D E H + S+ G +L
Sbjct: 211 SSVYTVSPPIDYLPFETTAATFVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSL 270
Query: 150 IQISTEKEDYLVDTIA-LHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLF 208
+QIST ++D++VDT+ +E+ +L FADP + K+FHGS D++WLQRD +YVV +F
Sbjct: 271 MQISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMF 330
Query: 209 DTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYI 268
DT A L+ P+KSL YLL + +K Q DWR RPLP+ M YA++D HYLLYI
Sbjct: 331 DTYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYI 390
Query: 269 AKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEI-ESYPGEAAASSIFF 327
L EL NS D+ ++VLE +S T LQ Y + + ++ G+ A ++
Sbjct: 391 YDNLRNELLT----NSTPEDNLVDYVLE---KSKTEALQRYERPVYDAATGQGAGG--WY 441
Query: 328 RLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTD 387
L+ + +SS +++ + WRD +AR DE ++ V + +A P +
Sbjct: 442 DLMTRSPAI--LSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGT 499
Query: 388 VYTTIA 393
++ T++
Sbjct: 500 LFRTMS 505
>ASPGD|ASPL0000095540 [details] [associations]
symbol:AN11774 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 InterPro:IPR012588
InterPro:IPR019465 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
Pfam:PF10392 PROSITE:PS50967 SMART:SM00474 GO:GO:0000166
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 EMBL:BN001303
GO:GO:0008408 EMBL:AACD01000084 SUPFAM:SSF47819 GO:GO:0000176
eggNOG:COG0349 KO:K12591 OrthoDB:EOG4SJ8P0 RefSeq:XP_662605.1
ProteinModelPortal:Q5B379 STRING:Q5B379
EnsemblFungi:CADANIAT00005393 GeneID:2872798 KEGG:ani:AN5001.2
Uniprot:Q5B379
Length = 1297
Score = 448 (162.8 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 118/366 (32%), Positives = 191/366 (52%)
Query: 37 PQYSCYLQSEPKPQHNFKRVLADNSYS--PFKHA---NKEKSSGS-HPYELEITALLENP 90
PQ Q +P F+ +L ++ P + + + + GS +PYE EI A + P
Sbjct: 152 PQLQFEHQVDPTDTSPFRPLLKTKPHAIEPLEQSLTPSIDAPHGSRNPYETEIRAA-KYP 210
Query: 91 RPEFDFSN-VDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTAL 149
+ S +D + + +V+T + E+ L A+D E H + S+ G +L
Sbjct: 211 SSVYTVSPPIDYLPFETTAATFVDTLDGVKEMLAELKSAREIAIDLEHHDVHSYHGLVSL 270
Query: 150 IQISTEKEDYLVDTIA-LHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLF 208
+QIST ++D++VDT+ +E+ +L FADP + K+FHGS D++WLQRD +YVV +F
Sbjct: 271 MQISTREKDWVVDTLKPWREELQMLNEVFADPNILKLFHGSSMDIIWLQRDLGLYVVGMF 330
Query: 209 DTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYI 268
DT A L+ P+KSL YLL + +K Q DWR RPLP+ M YA++D HYLLYI
Sbjct: 331 DTYHAACALNYPKKSLKYLLHKFVNFEADKQYQMADWRIRPLPSGMFNYARSDTHYLLYI 390
Query: 269 AKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEI-ESYPGEAAASSIFF 327
L EL NS D+ ++VLE +S T LQ Y + + ++ G+ A ++
Sbjct: 391 YDNLRNELLT----NSTPEDNLVDYVLE---KSKTEALQRYERPVYDAATGQGAGG--WY 441
Query: 328 RLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTD 387
L+ + +SS +++ + WRD +AR DE ++ V + +A P +
Sbjct: 442 DLMTRSPAI--LSSEQFAVLKAVHEWRDRVAREEDEGVQCVFPKHILFRVAQAMPQDLGT 499
Query: 388 VYTTIA 393
++ T++
Sbjct: 500 LFRTMS 505
>RGD|1311087 [details] [associations]
symbol:Exd2 "exonuclease 3'-5' domain containing 2"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
RGD:1311087 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CH473982 CTD:55218 eggNOG:NOG68878
HOGENOM:HOG000046597 OMA:QVIYAAR OrthoDB:EOG4GTKD1
GeneTree:ENSGT00390000014318 EMBL:BC166432 IPI:IPI00365636
RefSeq:NP_001102185.1 UniGene:Rn.102 STRING:B2GUW4
Ensembl:ENSRNOT00000033378 GeneID:362759 KEGG:rno:362759
UCSC:RGD:1311087 HOVERGEN:HBG051023 NextBio:681137
Genevestigator:B2GUW4 Uniprot:B2GUW4
Length = 648
Score = 366 (133.9 bits), Expect = 4.9e-38, Sum P(4) = 4.9e-38
Identities = 73/189 (38%), Positives = 109/189 (57%)
Query: 481 GVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKL 540
G R K + L V + KSP+Y NC + A DG+ LC CDR+K +WYL + + +L
Sbjct: 355 GSNQGRDPRKHKRKPLGVGYSARKSPLYDNCFLQAPDGQPLCTCDRRKAQWYLDKGIGEL 414
Query: 541 VEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQ 600
V P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R IIP YR HFP +
Sbjct: 415 VSKEPFVVRLQFEPAGRPESPG-DYYLMVKENLCVVCGKTDTYIRKNIIPHEYRKHFPIE 473
Query: 601 LKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKVADSRKAEARPGF 656
+K H SHD++LLC CH +++ K+Q++ EF P+ + + D + + R G
Sbjct: 474 MKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDLERRQVRSGA 533
Query: 657 SASITNFEA 665
A + N E+
Sbjct: 534 RA-LLNAES 541
Score = 90 (36.7 bits), Expect = 4.9e-38, Sum P(4) = 4.9e-38
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
PHG +VV + + E G+R Q RWRQ F++++ P LP W V H
Sbjct: 585 PHGLKVV----QRHTEGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDH 630
Score = 69 (29.3 bits), Expect = 4.9e-38, Sum P(4) = 4.9e-38
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P++R+EEL + +Y +++E L+ A
Sbjct: 528 QVRSGARALLN-AESLPAHRKEELLHALREFYNTDIVTEEMLQEA 571
Score = 37 (18.1 bits), Expect = 4.9e-38, Sum P(4) = 4.9e-38
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 242 REDWRQRPLPAEMLQYAQ 259
R W +R L AE++ +Q
Sbjct: 94 RASWEERILQAEVVTVSQ 111
>FB|FBgn0038269 [details] [associations]
symbol:Rrp6 "Rrp6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005652 "nuclear lamina" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0071027 "nuclear RNA surveillance" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
InterPro:IPR012588 Pfam:PF00570 Pfam:PF01612 Pfam:PF08066
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 EMBL:AE014297
GO:GO:0005730 GO:GO:0000166 GO:GO:0006378 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0010468 GO:GO:0008408 SUPFAM:SSF47819
GO:GO:0005652 GO:GO:0000176 KO:K12591 GeneTree:ENSGT00390000015408
GO:GO:0071027 RefSeq:NP_001097795.1 UniGene:Dm.7279
ProteinModelPortal:Q9VFF3 SMR:Q9VFF3 IntAct:Q9VFF3 STRING:Q9VFF3
PRIDE:Q9VFF3 EnsemblMetazoa:FBtr0113235 GeneID:41798
KEGG:dme:Dmel_CG7292 UCSC:CG7292-RB CTD:41798 FlyBase:FBgn0038269
InParanoid:Q9VFF3 OMA:FERITTN OrthoDB:EOG4THT8C PhylomeDB:Q9VFF3
GenomeRNAi:41798 NextBio:825622 ArrayExpress:Q9VFF3 Bgee:Q9VFF3
Uniprot:Q9VFF3
Length = 900
Score = 411 (149.7 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 81/207 (39%), Positives = 121/207 (58%)
Query: 77 HPYELEITALLENPRPEFDFSNVDLD-LQRSDSFVWVETKSQLNELANALSKEFFFAVDT 135
HPYE E+ + P +F L L + V+T +L + L + A+D
Sbjct: 239 HPYEFELLKF-QPPEEQFQKQKPVLPALMAETELMVVDTVEKLKQALEELRQAPQIAIDV 297
Query: 136 EQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMW 195
E HS R+F+G T L+Q+ST +DY+ DT+ L D++ IL DP K+ HG+D D+ W
Sbjct: 298 EHHSYRTFMGITCLVQMSTRSKDYIFDTLILRDDMHILNLVLTDPKKLKILHGADLDIEW 357
Query: 196 LQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEML 255
LQRD +Y+VN+FDT +A + L+ + SLAYLL+ Y + +K LQ DWR RPLP +++
Sbjct: 358 LQRDLSLYIVNMFDTHRAAKALNMARLSLAYLLKHYLDLDVDKSLQLADWRMRPLPQQLV 417
Query: 256 QYAQTDAHYLLYIAKCLVAELKQQGNE 282
YA+ D H+L+Y+ + +L QQ E
Sbjct: 418 DYARQDTHFLIYVYGRMTNDLLQQHAE 444
Score = 66 (28.3 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 347 VRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAP 382
+R + WRD AR DES +VL + ++ +A P
Sbjct: 492 LRGIFEWRDATARSEDESYGYVLPNHMMLQIAESLP 527
Score = 47 (21.6 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 48 KPQHNFKRVLADNSYSPFKHANKEKSSGSHPYELEITALLENPRPEFD 95
+PQ F+ + +++ +PF KEK P L+ ALL PE+D
Sbjct: 191 RPQTQFREPVDNSAQNPFVPRLKEK-----PNSLKPLALL----PEYD 229
Score = 44 (20.5 bits), Expect = 1.4e-37, Sum P(4) = 1.4e-37
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 528 KLEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRY- 586
KLE ++AK+ M LFE + +P E + + +K S Y RY
Sbjct: 617 KLEVPNKEEVAKVDPTLAAPAMALFEKQSKPTQEEEQRWAHLRKE---SQTMRMPYKRYL 673
Query: 587 RIIPSCYRIHFPEQLKSHRS 606
I+P ++ +QL RS
Sbjct: 674 AILPLMVQLK-ADQLARERS 692
>UNIPROTKB|E1BXG2 [details] [associations]
symbol:EXD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 CTD:55218 OMA:QVIYAAR
GeneTree:ENSGT00390000014318 EMBL:AADN02003163 IPI:IPI00593059
RefSeq:NP_001186629.1 UniGene:Gga.9546 ProteinModelPortal:E1BXG2
Ensembl:ENSGALT00000015388 GeneID:423264 KEGG:gga:423264
NextBio:20825760 Uniprot:E1BXG2
Length = 621
Score = 377 (137.8 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 69/171 (40%), Positives = 105/171 (61%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
KN+ + +G + R ++ + L V + KSP+Y NC ++A DG+ LC CDRKK
Sbjct: 316 KNRRSVVNVHSSGSQQVRDPRRQKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRKK 375
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + LV +P + L FEP GRPE + ++Y+ K+N+CV CG+ Y+R I
Sbjct: 376 AQWYLDKGIGDLVSTDPFVVKLRFEPSGRPESDV-DYYLMVKENLCVVCGKRESYIRKNI 434
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPL 639
+P YR HFP Q+K H SHD++LLC CH +++ K+Q++ EFG P+
Sbjct: 435 VPHEYRRHFPIQMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAEEFGAPI 485
Score = 87 (35.7 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMH 912
PHG +VV + G + Q +RWRQ F++++ P LP W V H
Sbjct: 558 PHGLKVVQCCAKG-GLRSLMQLERRWRQHFLDSMQPKHLPEQWSVDH 603
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 24/96 (25%), Positives = 36/96 (37%)
Query: 173 LQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFD----TAKACEVLSKPQKSLAYLL 228
L AD V KV G D L +D+ + V D + + L SL L
Sbjct: 154 LLDIMADDAVLKVGVGCWEDACKLLQDYSLPVKGSVDLRYLAMRQRKDLLHNCLSLKSLA 213
Query: 229 ETY--CGVATNKFLQREDWRQRPLPAEMLQYAQTDA 262
E C + + ++ +W L + + YA DA
Sbjct: 214 EKVLNCPLDKSPHMRCSNWEAEELTQDQVLYAARDA 249
>FB|FBgn0037901 [details] [associations]
symbol:CG6744 species:7227 "Drosophila melanogaster"
[GO:0005622 "intracellular" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016444 "somatic cell DNA recombination"
evidence=IMP] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 EMBL:AE014297 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:NOG68878 OMA:QVIYAAR
GO:GO:0016444 EMBL:AY089433 RefSeq:NP_001247048.1
RefSeq:NP_650075.1 UniGene:Dm.5018 SMR:Q9VGN7 DIP:DIP-23707N
IntAct:Q9VGN7 MINT:MINT-965203 EnsemblMetazoa:FBtr0082402
EnsemblMetazoa:FBtr0308211 GeneID:41374 KEGG:dme:Dmel_CG6744
UCSC:CG6744-RA FlyBase:FBgn0037901 GeneTree:ENSGT00390000014318
InParanoid:Q9VGN7 OrthoDB:EOG4VDNDR GenomeRNAi:41374 NextBio:823540
Uniprot:Q9VGN7
Length = 583
Score = 327 (120.2 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 75/245 (30%), Positives = 122/245 (49%)
Query: 470 NQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKL 529
N S V + G S+ + + Q + Y NC + A DG LLC DR+K
Sbjct: 263 NPSGSGVTRSKGSTQSKSNKWVPKKQPYRQIATRTKDFYDNCLLQAPDGELLCTIDRRKA 322
Query: 530 EWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRII 589
WYL ++L + + P + L FEP GR + FY KKN CV CG+ + Y+R ++
Sbjct: 323 SWYLNQNLGTHISEEPFTVRLNFEPAGRAVGDVGRFYQTIKKNQCVVCGDRDAYIRKNVV 382
Query: 590 PSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRK 649
P YR HFP +KSH S D++LLC CH++++ + + + +++ + P K
Sbjct: 383 PREYRKHFPLVMKSHTSDDVLLLCPTCHQLSNISDLRVRSKLAVQCEAPF---------K 433
Query: 650 AEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQ 709
E S+ + ++++A ALLHHG +P+ ++ E+ + ++ YY +
Sbjct: 434 QE-----DGSV-KYHDDPQLKRVQSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDIT 487
Query: 710 EDLER 714
EDL R
Sbjct: 488 EDLLR 492
Score = 96 (38.9 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 40/167 (23%), Positives = 66/167 (39%)
Query: 114 TKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEI-SI 172
T+ LNEL N D E ++ AL+Q+S+ + + + +I
Sbjct: 63 TQWVLNELKNHCQTFKVLGFDCEWITVGGSRRPVALLQLSSHRGLCALFRLCHMKQIPQD 122
Query: 173 LQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYC 232
L+ D V KV D M L D+ + V + D C + + L L +T+
Sbjct: 123 LRELLEDDSVIKVGVAPQEDAMKLSHDYGVGVASTLDLRFLCVMAGHKPEGLGKLSKTHL 182
Query: 233 GVATNKF--LQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELK 277
+K L +W + L + L YA DA + I + L +L+
Sbjct: 183 NYTLDKHWRLACSNWEAKTLEPKQLDYAANDALMAVAIYQKLCRDLQ 229
Score = 86 (35.3 bits), Expect = 2.7e-36, Sum P(3) = 2.7e-36
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 867 HGKQVVDYLLREYGEDGIRQFCQRWRQVFVEALHPHFLPAGWDVMH 912
HG++VV +G G+ + + WRQ F+ + P FLP W+V H
Sbjct: 509 HGERVVQQYRDHFG--GLVELERLWRQHFLHTMQPRFLPELWNVNH 552
>UNIPROTKB|J9NWB3 [details] [associations]
symbol:EXD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GeneTree:ENSGT00390000014318 EMBL:AAEX03005807
Ensembl:ENSCAFT00000048173 Uniprot:J9NWB3
Length = 577
Score = 373 (136.4 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 73/201 (36%), Positives = 116/201 (57%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G R + + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 321 RNKKSKMDGTMLGNHQGRDPRRHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 380
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV + P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R +
Sbjct: 381 AQWYLDKGIGELVSEEPFVVKLQFEPAGRPESPG-DYYLMVKENLCVVCGKKDSYIRKNV 439
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLF----IHKV 644
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+ + +
Sbjct: 440 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAREFQAPIGSEEGLRLL 499
Query: 645 ADSRKAEARPGFSASITNFEA 665
D + + R G A + N E+
Sbjct: 500 EDPERRQVRSGARA-LLNAES 519
Score = 70 (29.7 bits), Expect = 2.3e-34, Sum P(2) = 2.3e-34
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 671 QLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
Q+R+ A ALL+ ++P++R+EEL + + +Y ++ E L+ A
Sbjct: 506 QVRSGARALLN-AESLPAHRKEELLQALREFYNTDTVTDEMLQEA 549
>TIGR_CMR|GSU_0443 [details] [associations]
symbol:GSU_0443 "ribonuclease D, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR010997
InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967
SMART:SM00341 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 Gene3D:1.10.150.80 SUPFAM:SSF47819
KO:K03684 RefSeq:NP_951502.1 ProteinModelPortal:Q74G09
GeneID:2686317 KEGG:gsu:GSU0443 PATRIC:22023634
HOGENOM:HOG000010987 OMA:LRETTFW ProtClustDB:CLSK924403
BioCyc:GSUL243231:GH27-436-MONOMER Uniprot:Q74G09
Length = 381
Score = 277 (102.6 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 67/169 (39%), Positives = 93/169 (55%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T + LA+ L E A D E S+ + LIQ + +VD +A D IS
Sbjct: 11 ITTVDGVRRLADRLGSEPIVACDLEADSMHHYQEKVCLIQFAVPGYAAIVDPLAAPD-IS 69
Query: 172 ILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETY 231
L P FA+ + KVFHG+D D+ L RDF I V NLFDT AC++L + + LA L
Sbjct: 70 PLAPLFANAAIRKVFHGADYDIRSLHRDFGIEVNNLFDTMIACQLLGEREFGLAAQLRKR 129
Query: 232 CGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
GV +K QR DW +RPL M++YA D L+ + + LVAEL+++G
Sbjct: 130 FGVELDKQYQRADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKG 178
Score = 41 (19.5 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 335 GVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAP 382
G S + T ++ L +RD AR D VL + LA + P
Sbjct: 209 GASRMDGRTLAVLEELLLFRDGRARQFDVPPFKVLGTDTVRELAERRP 256
Score = 37 (18.1 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 344 QDLVRRLCAWRDLMA-RVHDESLRFVLSDQAIIALANKAPANRTDV 388
+D ++RL WR A R+ E ++ ++ + +A KAP D+
Sbjct: 311 EDRLKRLKEWRTEEAGRLGIEP-GYIANNALLELVAVKAPRTMGDL 355
>TIGR_CMR|ECH_0300 [details] [associations]
symbol:ECH_0300 "putative ribonuclease D" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
RefSeq:YP_507121.1 ProteinModelPortal:Q2GHG2 STRING:Q2GHG2
GeneID:3928062 KEGG:ech:ECH_0300 PATRIC:20576105
HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
BioCyc:ECHA205920:GJNR-300-MONOMER Uniprot:Q2GHG2
Length = 387
Score = 200 (75.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 61/200 (30%), Positives = 95/200 (47%)
Query: 112 VETKSQLNELANALS--KEFFFAVDTE-QHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
++T +L L N L + F AVDTE S + LIQI+ KE +++D +A
Sbjct: 3 IDTVKELERLCNQLLVLQPKFIAVDTEFVRSSSEYYPKLCLIQIAYGKEQFVIDVLAKDM 62
Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY-- 226
++S+L F + + KVFH D+ L F +FDT A ++ Y
Sbjct: 63 DLSVLGHIFYNESIIKVFHDCRQDIDALLTKFPEIPSPIFDTQIAAMFCCCYDNAVGYSK 122
Query: 227 LLETYCGVATNKF-LQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSY 285
L+E + G++ +K L+R +W RPL A+ +QYA D YL + + L L G +
Sbjct: 123 LVEQFLGISLDKLSLKRSNWALRPLSADKIQYALNDVIYLYELYQILYNNLLDAGKLPWF 182
Query: 286 CPDDKFNFVLEASRRSNTVC 305
++ N VL+ N VC
Sbjct: 183 L-EEMNNIVLQEVN-CNDVC 200
Score = 52 (23.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 346 LVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYT 390
+VR + WR+ +A+ + + F+L ++ +++L ++D+ T
Sbjct: 216 VVRSVIEWRERLAKFFNLNREFILKNKVMLSLVRDF-IKKSDIST 259
>TIGR_CMR|CPS_3518 [details] [associations]
symbol:CPS_3518 "ribonuclease D" species:167879 "Colwellia
psychrerythraea 34H" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
GO:GO:0042780 HOGENOM:HOG000277560 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_270192.1 ProteinModelPortal:Q47YC8
STRING:Q47YC8 GeneID:3519149 KEGG:cps:CPS_3518 PATRIC:21469973
OMA:SRTGTEI BioCyc:CPSY167879:GI48-3546-MONOMER Uniprot:Q47YC8
Length = 379
Score = 168 (64.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 57/202 (28%), Positives = 88/202 (43%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+E + LN L L K A+DTE R+ L+Q+ ++ L+D +A+ D
Sbjct: 6 IEDQKSLNNLCEQLVKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAIDD--- 62
Query: 172 ILQPFFA---DPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY-- 226
L PF+A + + KV H D+ + VNL D+ L SL Y
Sbjct: 63 -LAPFWALLTNENITKVLHACSEDLEVFLTAGNCKPVNLIDSQIMMSFLGHGL-SLGYAA 120
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGN----- 281
+++ + + +K R DW +RPL + L YA D +L I L+AE+ Q G
Sbjct: 121 MVKHFTDIELDKSESRTDWTKRPLTEKQLDYASADVDHLFDIYPKLLAEITQAGFLAYAQ 180
Query: 282 -ENSYCPDDKFNFVLEASRRSN 302
E D KF ++E+ N
Sbjct: 181 IETQSMIDKKFTPIIESEMYLN 202
Score = 65 (27.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 345 DLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAP 382
+L++ L +WR A+ D L FV D ++ALA P
Sbjct: 215 NLLKYLASWRFQQAKKRDLPLGFVAKDHTLMALAQSNP 252
>TIGR_CMR|SO_2580 [details] [associations]
symbol:SO_2580 "ribonuclease D" species:211586 "Shewanella
oneidensis MR-1" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 GO:GO:0042780
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:NP_718166.1 ProteinModelPortal:Q8EE10
GeneID:1170282 KEGG:son:SO_2580 PATRIC:23524787
ProtClustDB:CLSK906783 Uniprot:Q8EE10
Length = 367
Score = 151 (58.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 50/173 (28%), Positives = 71/173 (41%)
Query: 109 FVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
F +V ++ LN L + +DTE R++ LIQ K L+D IAL D
Sbjct: 2 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPIALPD 61
Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY-- 226
+S +P + K+ H D+ LFD+ A + L Y
Sbjct: 62 -LSAFWALLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGH-GLGYAK 119
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQ 279
L+ET G +K R DW +RPL L YA D YL + L +L+ Q
Sbjct: 120 LVETCLGEVIDKGESRTDWMRRPLTDAQLSYAANDVLYLYQLYPQLAEKLQTQ 172
Score = 73 (30.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 350 LCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDV 388
L WR A D +L FV+ D +IALA K P + +D+
Sbjct: 219 LAKWRLEKALARDLALGFVIKDHGLIALAKKQPKSMSDL 257
>UNIPROTKB|P09155 [details] [associations]
symbol:rnd "RNase D" species:83333 "Escherichia coli K-12"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0033890 "ribonuclease D activity" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA;IMP] [GO:0004540
"ribonuclease activity" evidence=IMP] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00341
SMART:SM00474 GO:GO:0005737 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003676
GO:GO:0008033 SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0008408
SUPFAM:SSF47819 eggNOG:COG0349 EMBL:X70994 EMBL:X07055 PIR:S01223
RefSeq:NP_416318.1 RefSeq:YP_490065.1 PDB:1YT3 PDBsum:1YT3
ProteinModelPortal:P09155 SMR:P09155 DIP:DIP-10726N IntAct:P09155
MINT:MINT-1309170 PRIDE:P09155 DNASU:946328
EnsemblBacteria:EBESCT00000002543 EnsemblBacteria:EBESCT00000015703
GeneID:12931344 GeneID:946328 KEGG:ecj:Y75_p1779 KEGG:eco:b1804
PATRIC:32118925 EchoBASE:EB0851 EcoGene:EG10858
HOGENOM:HOG000277560 KO:K03684 OMA:TKYLHAG ProtClustDB:PRK10829
BioCyc:EcoCyc:EG10858-MONOMER BioCyc:ECOL316407:JW1793-MONOMER
BioCyc:MetaCyc:EG10858-MONOMER EvolutionaryTrace:P09155
Genevestigator:P09155 GO:GO:0033890 TIGRFAMs:TIGR01388
Uniprot:P09155
Length = 375
Score = 162 (62.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 49/174 (28%), Positives = 71/174 (40%)
Query: 108 SFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALH 167
++ + T L L A+ A+DTE R++ LIQ+ + L+D + +
Sbjct: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT 61
Query: 168 DEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAY 226
D S L+ DP + K H D+ F L DT +P A
Sbjct: 62 DW-SPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS 120
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
++E Y GV +K R DW RPL +YA D YLL I L+ E + G
Sbjct: 121 MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASG 174
Score = 45 (20.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 350 LCAWRDLMARVHDESLRFVLSDQAIIALANKAPAN 384
L WR AR D ++ FV+ ++ + ++A P +
Sbjct: 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGS 254
>TIGR_CMR|SPO_2167 [details] [associations]
symbol:SPO_2167 "ribonuclease D" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003676 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 RefSeq:YP_167394.1 ProteinModelPortal:Q5LRG1
GeneID:3193200 KEGG:sil:SPO2167 PATRIC:23377681
HOGENOM:HOG000277561 OMA:KSKYLHK ProtClustDB:CLSK864964
Uniprot:Q5LRG1
Length = 385
Score = 161 (61.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 53/177 (29%), Positives = 77/177 (43%)
Query: 114 TKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKED----YLVDTIALHDE 169
T +L A + + VDTE R++ LIQ++ ED LVD +A E
Sbjct: 6 TTPELAAFCKAAASHAYVTVDTEFLRERTYYSKLCLIQLAYPGEDADSAVLVDPLAEGLE 65
Query: 170 ISILQPFFADPGVCKVFHGS--DNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAY 226
+ L F D V KVFH + D ++ W+ D ++ LFDT A V Q
Sbjct: 66 LEPLYTLFRDTSVVKVFHAARQDLEIFWV--DAGVFPEPLFDTQVAAMVCGFGEQVGYET 123
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNEN 283
L+ C +K + DW +RPL YA D +L I + L A+L + G +
Sbjct: 124 LVRKICRQGLDKTSRFTDWSRRPLSDAQKTYALADVTHLRQIYEHLAADLAKTGRSH 180
>TIGR_CMR|APH_0137 [details] [associations]
symbol:APH_0137 "putative ribonuclease D" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR002562 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0000166 GO:GO:0003676
GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 eggNOG:COG0349
KO:K03684 HOGENOM:HOG000063479 OMA:FHDCRQD ProtClustDB:CLSK749493
RefSeq:YP_504762.1 ProteinModelPortal:Q2GLI9 STRING:Q2GLI9
GeneID:3930937 KEGG:aph:APH_0137 PATRIC:20948846
BioCyc:APHA212042:GHPM-172-MONOMER Uniprot:Q2GLI9
Length = 381
Score = 164 (62.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 53/182 (29%), Positives = 89/182 (48%)
Query: 132 AVDTEQHSLRSFLGF---TALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHG 188
A+DTE LRSF + L+QI+ E + ++D +A +++ LQ F + + KVFH
Sbjct: 25 AIDTE--FLRSFNDYYPKLCLLQIAYENKQCVIDALAEGIDLTPLQEIFDNTQIFKVFHD 82
Query: 189 SDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY--LLETYCGVATNKF-LQREDW 245
D+ L F +FDT A + + S+ Y L+E + GV NK +R DW
Sbjct: 83 CRQDLDALSLLFESLPRPIFDTQIAAMLCEYHENSVGYSKLVEQFLGVKLNKMPFKRVDW 142
Query: 246 RQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVC 305
+RPL ++YA D YL + L L +G + Y ++ + ++++ + T
Sbjct: 143 SKRPLTESEVRYALDDVIYLYKLYGILRDILTSKGRLSWYM--EEMDCIVDSVSDNYTTI 200
Query: 306 LQ 307
L+
Sbjct: 201 LE 202
Score = 41 (19.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 9/67 (13%), Positives = 32/67 (47%)
Query: 321 AASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANK 380
+ S + +L + ++ ++ R + WR+ +AR+ + + +++ + ++ +
Sbjct: 192 SVSDNYTTILESMECYADLTEQEANIARSVVEWRERVARLLNINRNIIMNARDVLNITKD 251
Query: 381 APANRTD 387
A+ +D
Sbjct: 252 FIADGSD 258
>UNIPROTKB|O07183 [details] [associations]
symbol:MT2755 "CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR010997 InterPro:IPR012337 Pfam:PF00570 Pfam:PF01612
PROSITE:PS50967 SMART:SM00341 SMART:SM00474 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842580 GO:GO:0000166 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 SUPFAM:SSF47819 KO:K03684
EMBL:AL123456 PIR:D70528 RefSeq:NP_217197.1 RefSeq:NP_337256.1
RefSeq:YP_006516125.1 SMR:O07183 EnsemblBacteria:EBMYCT00000002560
EnsemblBacteria:EBMYCT00000070259 GeneID:13319408 GeneID:887708
GeneID:925540 KEGG:mtc:MT2755 KEGG:mtu:Rv2681 KEGG:mtv:RVBD_2681
PATRIC:18127796 TubercuList:Rv2681 HOGENOM:HOG000243390 OMA:ADWSTRP
ProtClustDB:CLSK792001 Uniprot:O07183
Length = 438
Score = 138 (53.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 45/154 (29%), Positives = 72/154 (46%)
Query: 131 FAVDTEQHSLRSFLGFTALIQIS-TEKEDYLVDTIALH--DEISILQPFFADPGVCK-VF 186
FAVD E+ S + G LIQI E L+D ++ H D +++L P + +
Sbjct: 54 FAVDAERASGFRYSGRAYLIQIRRAEAGTVLIDPVS-HGGDPLTVLAPVAEVLSTNEWIL 112
Query: 187 HGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWR 246
H +D D+ L + + L+DT A + + +LA ++E G+ K DW
Sbjct: 113 HSADQDLPCLA-EVGMRPPALYDTELAGRLAGFDRVNLAAMVERLLGLGLTKGHGAADWS 171
Query: 247 QRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
+RPLP+ L YA D L+ + + L +QG
Sbjct: 172 KRPLPSAWLNYAALDVELLIELRAAISRVLAEQG 205
Score = 62 (26.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 25/80 (31%), Positives = 36/80 (45%)
Query: 309 YTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFV 368
+ + ES P AAA +R +G V + VR L RD +A+ D + R +
Sbjct: 216 HLRSFESRPPPAAARQDRWRRTSGIHKVHDRRGLAA--VRELWTARDRIAQRRDIAPRRI 273
Query: 369 LSDQAIIALANKAPANRTDV 388
L D AII A P + D+
Sbjct: 274 LPDSAIIDAAIADPKSVDDL 293
Score = 50 (22.7 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 342 VTQDLVRRLC-AWRDL 356
V+ DLVRRLC W D+
Sbjct: 373 VSPDLVRRLCWEWEDI 388
>TIGR_CMR|APH_1098 [details] [associations]
symbol:APH_1098 "3''-5'' exonuclease family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 EMBL:CP000235 GenomeReviews:CP000235_GR
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_505646.1 ProteinModelPortal:Q2GJ05 STRING:Q2GJ05
GeneID:3930416 KEGG:aph:APH_1098 PATRIC:20950954
BioCyc:APHA212042:GHPM-1104-MONOMER Uniprot:Q2GJ05
Length = 204
Score = 139 (54.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 53/179 (29%), Positives = 77/179 (43%)
Query: 119 NELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKED-YLVDTIALHDEISILQPFF 177
N+L + + AVDTE L L+Q+S D +LV + + L+
Sbjct: 8 NDLPHDVDLGDMVAVDTETMGLVCRRDRVCLVQLSAGNGDAHLVKFDGDYSAPN-LRKVI 66
Query: 178 ADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVA 235
+DPGV K+FH + DV ++ F ++ + T A ++ L L GV
Sbjct: 67 SDPGVLKIFHFARFDVAAIRHGFGMWATPCYCTKIASRLVRTYTNHHGLKDLCYELLGVK 126
Query: 236 TNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFV 294
NK Q DW + L AE L YA D YL I K L L+++ E + F FV
Sbjct: 127 INKAQQSSDWGREVLTAEQLSYAAADVIYLHAIKKKLDMMLERE--EKQELAEACFKFV 183
>TIGR_CMR|NSE_0529 [details] [associations]
symbol:NSE_0529 "3'-5' exonuclease family protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0349 KO:K03684
RefSeq:YP_506413.1 ProteinModelPortal:Q2GDN3 STRING:Q2GDN3
GeneID:3931905 KEGG:nse:NSE_0529 PATRIC:22681107
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
BioCyc:NSEN222891:GHFU-549-MONOMER Uniprot:Q2GDN3
Length = 206
Score = 130 (50.8 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 44/151 (29%), Positives = 64/151 (42%)
Query: 132 AVDTEQHSLRSFLGFTALIQIST-EKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSD 190
A+DTE L + L+Q+ST + +LV L+ DP V K+FH +
Sbjct: 22 AIDTESMGLVNRRDRLCLVQLSTGDGTAHLVRFNGTDYSAPRLKSLLVDPAVIKIFHFAR 81
Query: 191 NDVMWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVATNKFLQREDWRQR 248
D+ L+ + N + T A ++ SL L GV NK Q DW
Sbjct: 82 FDIAILRHYLGVLTENCYCTKIASRLVRTYTDHHSLKELCLDLLGVRLNKGKQSSDWGST 141
Query: 249 PLPAEMLQYAQTDAHYLLYIAKCLVAELKQQ 279
L E + YA +D YL I + L LK++
Sbjct: 142 SLTREQMSYAASDVLYLHAIKEALDVMLKRE 172
>UNIPROTKB|Q9KQL4 [details] [associations]
symbol:rnd "Ribonuclease D" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 138 (53.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 45/149 (30%), Positives = 64/149 (42%)
Query: 133 VDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDND 192
+DTE R+F LIQ+ + L+D L DE++ D V KV H D
Sbjct: 35 LDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL-DEMTPFVELLQDTSVLKVLHACGED 93
Query: 193 VMWLQRDFHIYVVNLFDTAKACEVLSKPQKS-LAYLLETYCGVATNKFLQREDWRQRPLP 251
+ Q F + DT L + A L++ V +K R DW RPL
Sbjct: 94 LEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALVQDQLQVELDKSESRTDWLARPLS 153
Query: 252 AEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
+ L+YA D YLL + + LV ++ Q G
Sbjct: 154 DKQLEYAAADVFYLLPMYEKLVEQVTQAG 182
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 346 LVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKA 381
+++ L WR A D +L FV+ + ++ ++ A
Sbjct: 224 ILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLA 259
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 719 GMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMV 757
G+ P RRH+ K +K + T P D+YP +V
Sbjct: 270 GVDPHAIRRHSSKIIAMVKTALET--P---ADAYPPEIV 303
>TIGR_CMR|VC_1984 [details] [associations]
symbol:VC_1984 "ribonuclease D" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_01899 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR006292 InterPro:IPR010997 InterPro:IPR012337
Pfam:PF00570 Pfam:PF01612 PROSITE:PS50967 SMART:SM00474
GO:GO:0005737 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0006396 SUPFAM:SSF53098 GO:GO:0008408
SUPFAM:SSF47819 GO:GO:0004525 GO:GO:0042780 KO:K03684 GO:GO:0033890
TIGRFAMs:TIGR01388 PIR:G82132 RefSeq:NP_231618.1
ProteinModelPortal:Q9KQL4 DNASU:2613488 GeneID:2613488
KEGG:vch:VC1984 PATRIC:20083002 OMA:LCAWRER ProtClustDB:CLSK874625
Uniprot:Q9KQL4
Length = 381
Score = 138 (53.6 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 45/149 (30%), Positives = 64/149 (42%)
Query: 133 VDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDND 192
+DTE R+F LIQ+ + L+D L DE++ D V KV H D
Sbjct: 35 LDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTVL-DEMTPFVELLQDTSVLKVLHACGED 93
Query: 193 VMWLQRDFHIYVVNLFDTAKACEVLSKPQKS-LAYLLETYCGVATNKFLQREDWRQRPLP 251
+ Q F + DT L + A L++ V +K R DW RPL
Sbjct: 94 LEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAALVQDQLQVELDKSESRTDWLARPLS 153
Query: 252 AEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
+ L+YA D YLL + + LV ++ Q G
Sbjct: 154 DKQLEYAAADVFYLLPMYEKLVEQVTQAG 182
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 346 LVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKA 381
+++ L WR A D +L FV+ + ++ ++ A
Sbjct: 224 ILKPLATWRYHEAVNRDLALNFVIKETDLLTISRLA 259
Score = 38 (18.4 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 719 GMSPRERRRHAKKRGLSLKMSKPTDFPDRQQDSYPAVMV 757
G+ P RRH+ K +K + T P D+YP +V
Sbjct: 270 GVDPHAIRRHSSKIIAMVKTALET--P---ADAYPPEIV 303
>TIGR_CMR|ECH_1011 [details] [associations]
symbol:ECH_1011 "3'-5' exonuclease family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 eggNOG:COG0349 KO:K03684
HOGENOM:HOG000003834 OMA:CTKIASR ProtClustDB:CLSK863722
RefSeq:YP_507797.1 ProteinModelPortal:Q2GFI6 STRING:Q2GFI6
GeneID:3927400 KEGG:ech:ECH_1011 PATRIC:20577396
BioCyc:ECHA205920:GJNR-1014-MONOMER Uniprot:Q2GFI6
Length = 204
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 40/166 (24%), Positives = 72/166 (43%)
Query: 120 ELANALSKEFFFAVDTEQHSLRSFLGFTALIQI-STEKEDYLVDTIALHDEISILQPFFA 178
+L N L E AVDTE L ++Q+ + E +LV + + +++ +
Sbjct: 9 DLPNGLKFENTVAVDTETMGLVCRRDKLCVVQLCDSNGETHLVKFLGSYQAPNLVS-VLS 67
Query: 179 DPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSK--PQKSLAYLLETYCGVAT 236
D + K+FH + D+ ++ ++ + T A +++ L L V
Sbjct: 68 DSSITKIFHFARFDIAVIRYYLGVWATPCYCTKIASKLVRTYTDHHGLKELCYELLNVKL 127
Query: 237 NKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNE 282
NK Q DW + L +E L YA +D YL + L A L+++ +
Sbjct: 128 NKMQQSSDWGKETLTSEQLNYAASDVIYLHALKNKLDAMLQRENKQ 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 914 863 0.00084 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 631 (67 KB)
Total size of DFA: 463 KB (2218 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.16u 0.09s 73.25t Elapsed: 00:00:04
Total cpu time: 73.17u 0.09s 73.26t Elapsed: 00:00:04
Start: Tue May 21 08:16:00 2013 End: Tue May 21 08:16:04 2013