BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002503
(914 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 206 bits (525), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 174/324 (53%), Gaps = 9/324 (2%)
Query: 72 KSSGSHPYELEITALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANALSKEFFF 131
K+S HPYE EI + P + +D +WV T+SQL+++ L
Sbjct: 181 KNSLPHPYEPEIQNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEI 240
Query: 132 AVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDN 191
AVD E H RSF GF L+QIS ++D++VDT+ L +E+ L F +P + KVFHG+
Sbjct: 241 AVDLEHHDYRSFRGFVCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGATM 300
Query: 192 DVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLP 251
D++WLQRDF +YVVNLFDT A +VL LA+LL+ YC +K Q DWR RPLP
Sbjct: 301 DIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPLP 360
Query: 252 AEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTK 311
EML+YAQ+D HYLLYI L EL + E K N + S + L+ Y
Sbjct: 361 REMLKYAQSDTHYLLYIWDHLRNELISKSAER------KENLMQSVFNSSKQISLRKY-- 412
Query: 312 EIESY-PGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLS 370
E+E Y P + + +L G I + R L WRD +AR DES+R+VL
Sbjct: 413 ELEPYDPIYGLGTDGWRNVLTKFGSSKIIGREALMIYRALHDWRDSVARKEDESVRYVLP 472
Query: 371 DQAIIALANKAPANRTDVYTTIAQ 394
++ +IA+A P DV++ Q
Sbjct: 473 NRLLIAIAASKPVEAADVFSISKQ 496
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/325 (38%), Positives = 176/325 (54%), Gaps = 42/325 (12%)
Query: 71 EKSSGSHPYELEI------TALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ ++L+ P+P+ L R+ S L+EL
Sbjct: 250 EQDMFAHPYQYELDHFTPPQSVLQRPKPQ---------LYRAVGETPCHLVSSLDELVE- 299
Query: 125 LSKEFF----FAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADP 180
L+++ FAVD E HS RSFLG T L+QIST ED++VDT+ L ++ IL DP
Sbjct: 300 LNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMYILNESLTDP 359
Query: 181 GVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFL 240
+ KVFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL YCGV +NK
Sbjct: 360 AIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLARHSLDHLLRLYCGVESNKQY 419
Query: 241 QREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRR 300
Q DWR RPLP EML YA+ D HYLLYI + EL ++GN + V + R
Sbjct: 420 QLADWRIRPLPEEMLSYARDDTHYLLYIYDRMRLELWERGNHQPV----QLQVVWQ---R 472
Query: 301 SNTVCLQVYTKEI---ESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLM 357
S +CL+ + K I ESY L Q ++S + L AWRD
Sbjct: 473 SRDICLKKFVKPIFTDESY----------LELYRKQK--KHLNSQQLTAFQLLFAWRDKT 520
Query: 358 ARVHDESLRFVLSDQAIIALANKAP 382
AR DES +VL + ++ +A + P
Sbjct: 521 ARREDESYGYVLPNHMMLKIAEELP 545
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 175/321 (54%), Gaps = 34/321 (10%)
Query: 71 EKSSGSHPYELEIT------ALLENPRPEFDFSNVDLDLQRSDSFVWVETKSQLNELANA 124
E+ +HPY+ E+ A+L+ P+P+ + ++ ++ + +L EL
Sbjct: 250 EQDMFAHPYQYELNHFTPADAVLQKPQPQL-YRPIE-----ETPCHFISSLDELVELNEK 303
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCK 184
L FAVD E HS RSFLG T L+QIST ED+++DT+ L ++ IL DP + K
Sbjct: 304 LLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 363
Query: 185 VFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQRED 244
VFHG+D+D+ WLQ+DF +YVVN+FDT +A +L+ + SL +LL+ YC V +NK Q D
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLAD 423
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
WR RPLP EML YA+ D HYLLYI + E+ ++GN + V + RS +
Sbjct: 424 WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPV----QLQVVWQ---RSRDI 476
Query: 305 CLQVYTKEI---ESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVH 361
CL+ + K I ESY L Q + +T + L AWRD AR
Sbjct: 477 CLKKFIKPIFTDESY----------LELYRKQKKHLNTQQLT--AFQLLFAWRDKTARRE 524
Query: 362 DESLRFVLSDQAIIALANKAP 382
DES +VL + ++ +A + P
Sbjct: 525 DESYGYVLPNHMMLKIAEELP 545
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/377 (35%), Positives = 176/377 (46%), Gaps = 53/377 (14%)
Query: 48 KPQHNFKRVLADNSYSPFKHANKEKSSG---------------------SHPYELEITAL 86
KPQ FK + ++ PF KEK + HPYE EI
Sbjct: 131 KPQLKFKSPIDNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQ 190
Query: 87 LENP-----RPEFDFSNVDLDLQRSDSF-VWVETKSQLNELANALSKEFFFAVDTEQHSL 140
+P R E + D DS +WV+T ++L + L AVD E H
Sbjct: 191 EYSPEILQIREEIPSKSWD------DSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDY 244
Query: 141 RSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDF 200
RS+ G L+QIST + DYLVDT+ L + + IL F +P + KVFHG+ D++WLQRD
Sbjct: 245 RSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDL 304
Query: 201 HIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQT 260
+YVV LFDT A + + P+ SLAYLLE + T+K Q DWR RPL M YA+
Sbjct: 305 GLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARA 364
Query: 261 DAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEA 320
D H+LL I L N +K VL SR + Y+K P
Sbjct: 365 DTHFLLNIYDQL---------RNKLIESNKLAGVLYESRNVAKRRFE-YSKYRPLTPSSE 414
Query: 321 AASSIF----FRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIA 376
S I +++L Q + V LVR L WRDL+AR DES RFV+ +Q + A
Sbjct: 415 VYSPIEKESPWKILMYQYNIPPEREV---LVRELYQWRDLIARRDDESPRFVMPNQLLAA 471
Query: 377 LANKAPANRTDVYTTIA 393
L P TDV ++
Sbjct: 472 LVAYTP---TDVIGVVS 485
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 136/247 (55%), Gaps = 18/247 (7%)
Query: 469 KNQSNKFVYKQNGVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKK 528
+N+ +K G R K + L V + KSP+Y NC ++A DG+ LC CDR+K
Sbjct: 316 RNKKSKMDGMVPGNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRK 375
Query: 529 LEWYLTRDLAKLVEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRI 588
+WYL + + +LV + P + L FEP GRPE G+ +Y+ K+N+CV CG+ + Y+R +
Sbjct: 376 AQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGD-YYLMVKENLCVVCGKRDSYIRKNV 434
Query: 589 IPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSR 648
IP YR HFP ++K H SHD++LLC CH +++ K+Q++ EF P+
Sbjct: 435 IPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPI--------- 485
Query: 649 KAEARPGFSASITNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREIS 708
G + E Q+R+ A ALL + ++P+ R+EEL + + +Y ++
Sbjct: 486 ------GSEEGLRLLE-DPERRQVRSGARALL-NAESLPTQRKEELLQALREFYNTDVVT 537
Query: 709 QEDLERA 715
+E L+ A
Sbjct: 538 EEMLQEA 544
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 857 SKVSLLGHGPHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
+++S + PHG +VV + + G+R Q RWRQ F++++ P LP W V H
Sbjct: 549 TRISNENYVPHGLKVVQC----HSQGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDH 603
>sp|Q8VEG4|EXD2_MOUSE Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus
GN=Exd2 PE=2 SV=1
Length = 496
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 18/235 (7%)
Query: 481 GVKVSRQVAKKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRKKLEWYLTRDLAKL 540
G R K + L V + KSP+Y NC + A DG+ LC CDR+K +WYL + + +L
Sbjct: 203 GNNQGRDPRKHKRKPLGVGYSARKSPLYDNCFLQAPDGQPLCTCDRRKAQWYLDKGIGEL 262
Query: 541 VEDNPPAIMLLFEPKGRPEDEGNEFYIQSKKNICVSCGEGNHYLRYRIIPSCYRIHFPEQ 600
V P + L FEP GRPE G ++Y+ K+N+CV CG+ + Y+R IIP YR HFP +
Sbjct: 263 VSKEPFVVRLQFEPAGRPESPG-DYYLMVKENLCVVCGKTDTYIRKNIIPHEYRKHFPIE 321
Query: 601 LKSHRSHDIVLLCVDCHEVAHAAAEKYKKQISAEFGIPLFIHKVADSRKAEARPGFSASI 660
+K H SHD++LLC CH +++ K+Q++ EF P+ G +
Sbjct: 322 MKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPI---------------GSEEGL 366
Query: 661 TNFEAGVSPLQLRTAAMALLHHGPTMPSNRREELRRIVMRYYGGREISQEDLERA 715
E + Q+R+ A ALL + ++P++R+EEL + +Y I++E L A
Sbjct: 367 RLLE-DLERRQVRSGARALL-NAESLPAHRKEELLHALREFYNTDIITEEMLHEA 419
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 866 PHGKQVVDYLLREYGEDGIRQFCQ---RWRQVFVEALHPHFLPAGWDVMH 912
PHG +VV + + E G+R Q RWRQ F++++ P LP W V H
Sbjct: 433 PHGLKVV----QRHTEGGLRSLMQLESRWRQHFLDSMQPKHLPQQWSVDH 478
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 116/281 (41%), Gaps = 31/281 (11%)
Query: 111 WVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEI 170
W+ + L + + + A+DTE + +F L+Q+ + ++L+D + + D
Sbjct: 10 WIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLIDPLLVRDWG 69
Query: 171 SILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY--LL 228
+ DP V KV H D+ R V LFDT A L S+ Y L+
Sbjct: 70 PFAE-LLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMAH-SMGYSKLV 127
Query: 229 ETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPD 288
+ + K R DW QRPL ++YA D +L + L A L ++ + ++ +
Sbjct: 128 KEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEE--KRAWLLE 185
Query: 289 DKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAAS-SIFFRLLNGQGGVSSISSVTQDLV 347
D V R ES P EA + +RL Q V +
Sbjct: 186 DGAELVANLCR--------------ESDPREAYREVKLGWRLRPQQLAV----------L 221
Query: 348 RRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDV 388
R LCAWR+ AR+ + VL ++ + LA P N+TD+
Sbjct: 222 RELCAWREEQARLRNRPRNHVLRERTLWPLARLLPKNKTDL 262
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 /
NCIMB 13906) GN=rnd PE=3 SV=2
Length = 399
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T L E+ L+ F VDTE +F ++Q+++ E VD +A +++
Sbjct: 4 ITTTEALAEVCQRLASHAFVTVDTEFLRETTFWPKLCVVQLASADEAVAVDALASGLDLA 63
Query: 172 ILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLLET 230
L ADP V KVFH + D+ + I LFDT A V Q S L++T
Sbjct: 64 PLFELMADPAVVKVFHAARQDLEIVWNLAKIIPAPLFDTQVAAMVCGFGDQVSYGDLVQT 123
Query: 231 YCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
C V+ +K + DW +RPL + YA D YL I L +LK+ G
Sbjct: 124 VCKVSLDKSSRFTDWSRRPLLPAQVDYAIADVTYLRDIYAILQDKLKETG 173
>sp|A5G127|RND_ACICJ Ribonuclease D OS=Acidiphilium cryptum (strain JF-5) GN=rnd PE=3
SV=1
Length = 392
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 122/286 (42%), Gaps = 29/286 (10%)
Query: 103 LQRSDSF---VWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDY 159
++ S SF V +ET L L + L+ E F VDTE +++ ++Q+ +
Sbjct: 1 MKPSPSFPEPVLIETTEALAALCDRLAAEPFVTVDTEFMREKTYFPELCVVQLGGANDVA 60
Query: 160 LVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS- 218
++D A +++ L FA+P V KVFH D+ F LFDT A V
Sbjct: 61 VIDAQAEGLDLAPLGALFANPAVTKVFHACRQDIEIFLLKFGAVPAPLFDTQVAAMVAGF 120
Query: 219 KPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQ 278
Q L+ + G +K + DW RPL + YA D +L + + L A L +
Sbjct: 121 GDQVGYDTLVSSLAGGRIDKAHRFSDWSARPLSRAQIAYAAADVTWLRPVYEGLRARLTR 180
Query: 279 QGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSS 338
+G + ++V E + V T E P +A +R L +GG
Sbjct: 181 EG---------RLDWVAEEA----AVLADPATYRTE--PEDA------WRRLKLRGG--- 216
Query: 339 ISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPAN 384
+ LV+ + AWR+ A + + ++ D+ I LA APA+
Sbjct: 217 -NRRQLALVKAIAAWREREAMRVNVPRQRIVRDEQIPELAALAPAD 261
>sp|A0KXU5|RND_SHESA Ribonuclease D OS=Shewanella sp. (strain ANA-3) GN=rnd PE=3 SV=1
Length = 388
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 107/281 (38%), Gaps = 26/281 (9%)
Query: 109 FVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
F +V ++ LN L + +DTE R++ LIQ K L+D +AL D
Sbjct: 23 FQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVALPD 82
Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAYL 227
+S +P + K+ H D+ LFD+ A + A L
Sbjct: 83 -LSAFWSLLDNPNIIKLVHSCSEDLEVFAHYGQRQPTPLFDSQIAASLCGMGHGLGYAKL 141
Query: 228 LETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCP 287
+ET G +K R DW +RPL L YA D YL + L +LK Q
Sbjct: 142 VETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQ-------- 193
Query: 288 DDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLV 347
D+ ++ E R E + + R+ N ++ +
Sbjct: 194 -DRLGWLYEEGERMT-----------EGRLATPDMDTAYLRVKNA----FQLTEHQLAYL 237
Query: 348 RRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDV 388
+ L WR A D +L FV+ D +IALA K P + D+
Sbjct: 238 KVLAKWRLEKALARDLALGFVIKDHGLIALAKKQPKSMGDL 278
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 1/180 (0%)
Query: 110 VWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDE 169
V + T L + L +E F ++DTE R++ L+Q++ + E +VDT+A +
Sbjct: 13 VLITTTEDLTGVVERLRREPFVSIDTEFVRERTYWPELCLVQLAGQDEVVVVDTLAPGID 72
Query: 170 ISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLL 228
++ L DP V KVFH + D+ F LFDT A V Q L+
Sbjct: 73 LAPLGVLLDDPEVVKVFHAARQDLEIFLYLFGHLPAALFDTQVAAMVAGFGDQVGYDNLV 132
Query: 229 ETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPD 288
+ G +K + DW RPL + YA D +L + + L+ L+++G + D
Sbjct: 133 ASLTGAHIDKAHRFSDWSARPLSEAQIAYAAADVTHLRTVYQLLLERLEREGRLDWVASD 192
>sp|C6C608|RND_DICDC Ribonuclease D OS=Dickeya dadantii (strain Ech703) GN=rnd PE=3 SV=2
Length = 374
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 32/277 (11%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T L+E+ + + A+DTE R++ LIQ+ + L+D ++ I+
Sbjct: 6 ITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLS----IT 61
Query: 172 ILQPF---FADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKP-QKSLAYL 227
+ QPF DP V K H D+ F + DT L KP A L
Sbjct: 62 VWQPFCDLLLDPAVTKYLHAGSEDLEVFLNAFGLLPTPFVDTQILVAFLGKPLSYGFAAL 121
Query: 228 LETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCP 287
+ Y V +K R DW RPL + QYA D +YLL +A LV E G +
Sbjct: 122 VADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEAALD 181
Query: 288 DDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLV 347
+ C Q+ ++ + E A I G + +
Sbjct: 182 E----------------CRQLCQRKQDVLAPEQAYREI--------GNAWQLKGRHLACL 217
Query: 348 RRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPAN 384
++L WR AR D ++ F++ ++ + +A P +
Sbjct: 218 QKLADWRLRKARERDSAVNFIVREEHLGQVARYLPGS 254
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM
13023 / NCIMB 13966) GN=rnd PE=3 SV=2
Length = 384
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 131/327 (40%), Gaps = 45/327 (13%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T L + LS F VDTE +F LIQ++ ++ +VD +A +++
Sbjct: 4 ITTNEALRAACDRLSTAGFVTVDTEFMRDATFWPILCLIQLAGPSDELIVDPLAPDLDLA 63
Query: 172 ILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY--LLE 229
+ V KVFH + D+ + LFDT A V S+ Y L+
Sbjct: 64 PFYALMKNRNVVKVFHAARQDIEIFCHEGKAIPDPLFDTQVAAMVCGF-GDSVGYETLVR 122
Query: 230 TYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDD 289
G + +K + DW +RPL + LQYA D YL I + L L
Sbjct: 123 KLAGGSVDKSSRFTDWSRRPLSDKQLQYAMADVTYLRTIYEVLAKRLTH----------- 171
Query: 290 KFNFVLEASRRSNTVCLQVYT-KEIESYP--GEAAASSIFFRLLNGQGGVSSISSVTQDL 346
++R++ V ++ ++ E+Y E A + R GQ G++ + V
Sbjct: 172 --------TKRAHWVAEEMAVLQDPETYAMRPENAWKRVKAR-FRGQRGLAVLVEV---- 218
Query: 347 VRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSS 406
AWR+ A+ D V+ D A+ +A + P TI SD+D L
Sbjct: 219 ----AAWRERQAQERDLPRSRVMKDDALAEIATQIP-------RTI----SDLDGLRAVP 263
Query: 407 SLPSPSPVVCSHLDDVERQVCNNVENL 433
S S S ++ VER + E++
Sbjct: 264 KGFSNSRSAASLMEAVERGLAMKEEDI 290
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 119/302 (39%), Gaps = 28/302 (9%)
Query: 92 PEFDFSNVDLDL----QRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFT 147
P FSN + + Q F V + L E+ N ++ A+DTE + ++
Sbjct: 9 PFLFFSNKKITMIKECQNPPHFRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKL 68
Query: 148 ALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNL 207
LIQ+ + L+D +A+ D S A+P V K+ H D++ ++F +
Sbjct: 69 GLIQLYDGEHVSLIDPLAITD-FSPFVALLANPKVLKILHSCSEDLLVFLQEFDQLPRPM 127
Query: 208 FDTAKACEVLS-KPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLL 266
DT L LA L + Y V +K R +W +RPL LQYA D YLL
Sbjct: 128 IDTQIMARFLGLGTSAGLAKLAQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLL 187
Query: 267 YIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIF 326
+ L EL + E + R + + T +++ E A I
Sbjct: 188 PLYHILEKELAKTPWEQAV--------------RDDCELVLAKTHKLQERDSEKAYLDI- 232
Query: 327 FRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRT 386
++ + +R L WR +A D +L +++ + + +A P N +
Sbjct: 233 -------PNAWKLNPLELSRLRVLAQWRQNVAIERDLALSYIVKSEHLWKVAKNNPRNTS 285
Query: 387 DV 388
++
Sbjct: 286 EM 287
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 119/273 (43%), Gaps = 27/273 (9%)
Query: 114 TKSQ-LNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISI 172
TKS+ L L L +E + +DTE R++ ++Q+ ++DT+A +++
Sbjct: 16 TKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGGADCVAVIDTLAPELDLAP 75
Query: 173 LQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLLETY 231
+ ADP V KVFH D+ F +FDT A V Q L+ +
Sbjct: 76 VGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQVAAMVAGFGDQVGYDTLVSSL 135
Query: 232 CGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKF 291
G +K + DW +RPL + YA D +L + + L L+++G ++ ++
Sbjct: 136 TGGHIDKAHRFSDWSRRPLSQAQIDYAAADVTHLRGVYETLRDRLEKEGR-LAWVSEEMA 194
Query: 292 NFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLC 351
A+ R++ V +++ RL + L+R +C
Sbjct: 195 VLNDPATYRTDPV-------------------TMWERLRPRTNNRRYLG-----LLRAIC 230
Query: 352 AWRDLMARVHDESLRFVLSDQAIIALANKAPAN 384
AWR++ A+ + + ++ D++++ +A +PA+
Sbjct: 231 AWREVEAQRLNIPRQRLIKDESLLEIAATSPAD 263
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T + L ++ + K A+DTE R++ LIQ+ ++ L+D + I
Sbjct: 6 ITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLP----IK 61
Query: 172 ILQPF---FADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAYL 227
QPF ++ V K H D+ F + DT +P A L
Sbjct: 62 QWQPFIELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTGRPMSCGFATL 121
Query: 228 LETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCP 287
+ Y V +K R DW RPL + YA D YLL +AK LV E ++ G +
Sbjct: 122 VAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAG----WTA 177
Query: 288 DDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLV 347
+L RRS T+ ++ +EI + ++L Q G +
Sbjct: 178 AASNECLLLCQRRSETLAPELAYREITNA----------WQLRPRQLGC----------L 217
Query: 348 RRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADS 397
++L WR AR D ++ FV+ ++ + +A P T++ + DS
Sbjct: 218 QKLAEWRLRQARERDLAVNFVVREENLWQVARHMP-------TSLGELDS 260
>sp|Q5NPM2|RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=rnd PE=3 SV=1
Length = 390
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 2/171 (1%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ + L L + LS+ F A+DTE S+ LIQI+ +KE +D +A +++
Sbjct: 7 ITDSATLAALCSRLSRADFIAIDTEFIRENSYWPELCLIQIADDKEAAAIDPLAPGLDMT 66
Query: 172 ILQPFFAD-PGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLLE 229
L + + KVFH D+ + LFDT A L Q + L+E
Sbjct: 67 PLTDLLVNNEDILKVFHAGGQDLEIILHHTGKMPFPLFDTQIAAMALGVGEQVGYSNLVE 126
Query: 230 TYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
Y + +K + DW RPL L YA D +L + L+ EL+ +G
Sbjct: 127 RYLSIKLDKGARFTDWSHRPLDRRQLDYAIADVTHLATLFPMLLKELRDKG 177
>sp|P09155|RND_ECOLI Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1
Length = 375
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 81/215 (37%), Gaps = 19/215 (8%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T L L A+ A+DTE R++ LIQ+ + L+D + + D S
Sbjct: 6 ITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD-WS 64
Query: 172 ILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAYLLET 230
L+ DP + K H D+ F L DT +P A ++E
Sbjct: 65 PLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEE 124
Query: 231 YCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAE--------------- 275
Y GV +K R DW RPL +YA D YLL I L+ E
Sbjct: 125 YSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECR 184
Query: 276 LKQQGNENSYCPDDKFNFVLEAS--RRSNTVCLQV 308
L Q + P+D + + A R CLQ+
Sbjct: 185 LMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219
>sp|C9XUE4|RND_CROTZ Ribonuclease D OS=Cronobacter turicensis (strain DSM 18703 / LMG
23827 / z3032) GN=rnd PE=3 SV=2
Length = 369
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 2/170 (1%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T L L + A+DTE R++ LIQ+ + L+D + + E +
Sbjct: 2 ITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTI-TEWA 60
Query: 172 ILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQK-SLAYLLET 230
Q D + K H D+ Q F + DT + P A L+E
Sbjct: 61 PFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVEH 120
Query: 231 YCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
+ GVA +K R DW RPL YA D YLL IA L+ ++++ G
Sbjct: 121 HTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAG 170
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEIS 171
+ T ++L + L+ VDTE ++ ++Q+++ E +VD +A E
Sbjct: 4 ITTTAELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMASPDEAVVVDALA---EGI 60
Query: 172 ILQPFF---ADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY-- 226
L+PFF ++ V KVFH + D+ + I +FDT A VL S+AY
Sbjct: 61 DLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQVAAMVLGY-GDSIAYDA 119
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
L+E G +K + DW +RPL + L+YA D +L + L A+LK++G
Sbjct: 120 LVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALDADLKKRG 173
>sp|D4Z694|RND_SPHJU Ribonuclease D OS=Sphingobium japonicum (strain NBRC 101211 /
UT26S) GN=rnd PE=3 SV=2
Length = 388
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 125 LSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFAD-PGVC 183
++K + AVDTE S+ L+Q++ E E +D A ++S L D V
Sbjct: 20 IAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKAPGLDLSPLLDLMVDNEDVL 79
Query: 184 KVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLLETYCGVATNKFLQR 242
KVFH D+ + LFDT A L Q L++ + GV +K +
Sbjct: 80 KVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIGYGNLVDAWLGVQLDKGARF 139
Query: 243 EDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQG 280
DW +RPL + YA D YL+ I ++ EL++ G
Sbjct: 140 TDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTG 177
>sp|A1SVE6|RND_PSYIN Ribonuclease D OS=Psychromonas ingrahamii (strain 37) GN=rnd PE=3
SV=1
Length = 369
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 119/278 (42%), Gaps = 31/278 (11%)
Query: 109 FVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
F + T +QL++ L ++DTE R++ L+QIS + L+D IA+ D
Sbjct: 3 FEIITTTAQLHDFIATLDGSPI-SLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVGD 61
Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY-- 226
S Q A + H S D+ ++ LFDT AC L+ SL Y
Sbjct: 62 LSSFWQ---AIDNKNIILHASSEDLEIIRDHKGDLNFTLFDTQIACSFLNMG-ASLGYAK 117
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYC 286
++ET V +K R DW RPL + + YA D +LY+ CL E QQ EN
Sbjct: 118 MVETLEAVIVDKGESRTDWCARPLSEKQINYAGVD---VLYLQPCL--EKLQQQLENK-- 170
Query: 287 PDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDL 346
F F + +V Q K ++ P +A ++LLN + + +
Sbjct: 171 --KMFPFF---EQECQSVLAQ---KMVKQDPDKA------YKLLN---NLFKLDRQGLAI 213
Query: 347 VRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPAN 384
++ L WR L A+ + +L FV+ + LA P +
Sbjct: 214 IKALAKWRLLTAQERNLALNFVVKADHLWLLAYYQPTS 251
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 34/264 (12%)
Query: 130 FFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFF---ADPGVCKVF 186
F +DTE +F LIQ+++ L+D I+ + L+PFF + + KVF
Sbjct: 45 FVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQDID---LKPFFDLMVNKKIVKVF 101
Query: 187 HGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAY--LLETYCGVATNKFLQRED 244
H + D+ + + LFDT A + S++Y +++ G +K + D
Sbjct: 102 HAARQDIETIYHLGGVIPSPLFDTQIAGSICGFGD-SISYDQIVQRCTGYQLDKSSRFTD 160
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTV 304
W RPL + L YA D YL + L +L++ N+ ++ DD+ +LE
Sbjct: 161 WSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEK--NKRTHWMDDEIAVLLEP------- 211
Query: 305 CLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDES 364
K + EA + V ++++ AWR+ AR ++
Sbjct: 212 ------KTYDMPENEAWKKVKGKIKKPRELAV----------LQKIAAWRERKARQYNIP 255
Query: 365 LRFVLSDQAIIALANKAPANRTDV 388
R ++ D+ +I +A + P + D+
Sbjct: 256 RRHIIKDECLIEIAIQQPKDEADL 279
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 3/156 (1%)
Query: 112 VETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKED-YLVDTIALHDEI 170
+ T L ++ N K +DTE R++ LIQI+ E+ Y +D +++ D +
Sbjct: 7 ISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPLSIKD-L 65
Query: 171 SILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVL-SKPQKSLAYLLE 229
S L AD K+ H + D++ + + N+FDT A S SL L+
Sbjct: 66 SPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRLAAGFAGSISTISLLQLVS 125
Query: 230 TYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYL 265
+K R +W +RPL + L Y+ D YL
Sbjct: 126 EQLETELDKSETRTNWLKRPLTEKQLSYSLNDVRYL 161
>sp|Q5GZ75|RND_XANOR Ribonuclease D OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 /
KXO85) GN=rnd PE=3 SV=2
Length = 363
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 4/180 (2%)
Query: 111 WVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEI 170
W+ S+L + A ++ +DTE R++ AL+Q++ +E L+D + +
Sbjct: 4 WITHPSELTDRLQA-ARPARIGLDTEFIRERTYWPQLALVQMAIGEEILLIDPL-IPGMN 61
Query: 171 SILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTA-KACEVLSKPQKSLAYLLE 229
+ L+ + + KV H + D++ + + LFDT A L++
Sbjct: 62 AALKEWLTATDIVKVMHSASEDLVTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQKLVQ 121
Query: 230 TYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDD 289
G K R DW +RPL L+YA D YL I L L +Q N + +D
Sbjct: 122 EVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQ-NRLGWLAED 180
>sp|Q28RA7|RND_JANSC Ribonuclease D OS=Jannaschia sp. (strain CCS1) GN=rnd PE=3 SV=1
Length = 386
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 5/154 (3%)
Query: 130 FFAVDTEQHSLRSFLGFTALIQISTEKED----YLVDTIALHDEISILQPFFADPGVCKV 185
+ VDTE R++ L+Q++ D L+D +A + L F + V KV
Sbjct: 23 YVTVDTEFLRERTYFAQLCLVQVAMPGTDDTDAVLIDPLAEGLSLEPLYELFRNVNVVKV 82
Query: 186 FHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLS-KPQKSLAYLLETYCGVATNKFLQRED 244
FH + D+ + + LFDT A V Q L+ +K + D
Sbjct: 83 FHAARQDLEIFFVEGGLVPTPLFDTQVAAMVCGFGDQVGYETLVRRIAKANLDKSSRFTD 142
Query: 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQ 278
W +RPL YA D YL I + L AEL +
Sbjct: 143 WSRRPLSDAQKVYALADVTYLREIYEYLSAELAR 176
>sp|O67779|DPO1_AQUAE DNA polymerase I OS=Aquifex aeolicus (strain VF5) GN=polA PE=3 SV=1
Length = 574
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 109 FVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHD 168
F +V + L + L + +DTE R L+QI E+ Y++D + D
Sbjct: 3 FEYVTGEEGLKKAIKRLENSPYLYLDTETTGDR-----IRLVQIGDEENTYVIDLYEIQD 57
Query: 169 EISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLL 228
I L+ + G+ V H D+ +L R + I+ FDT A +L + SL +++
Sbjct: 58 -IEPLRKLINERGI--VGHNLKFDLKYLYR-YGIFPSATFDTMIASYLLGYERHSLNHIV 113
Query: 229 ETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYL 265
G + +K Q DW L L+YA D L
Sbjct: 114 SNLLGYSMDKSYQTSDWGASVLSDAQLKYAANDVIVL 150
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1
SV=3
Length = 876
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 27/155 (17%)
Query: 148 ALIQISTEKEDYLVDTIALHDEIS---------ILQPFFADPGVCKVFHGSDNDVMWLQR 198
+L+Q++ E +L+D +AL + ++ +DP + K+ +G D+ L
Sbjct: 415 SLLQVAVEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGT 474
Query: 199 DFHIYV---------VNLFDTAKACEVLSKPQ---------KSLAYLLETYCGVATNKFL 240
++L + V S P + L+ L++ G A +K
Sbjct: 475 SCPALAHVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQ 534
Query: 241 QREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAE 275
Q +W +RPL E + YA DA+ LL + + L E
Sbjct: 535 QLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCRE 569
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527
PE=3 SV=1
Length = 719
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 32/230 (13%)
Query: 79 YELEITALLENPRPEFDFSNVDL-------DLQRSDSFV-WVETKSQLNELANALSKEFF 130
Y LE + PR +FD D L+ +S V V++K + + + L ++
Sbjct: 399 YILEQEGNKQAPRTDFDDEQWDAPDSEPAHTLRLDESHVHLVDSKDKFYAMLSDLCRQSM 458
Query: 131 FAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALH----DEISILQPFFADPGVCKVF 186
A D+E +LIQ++T + Y++D + D ++ + F V K+
Sbjct: 459 IAFDSEWKPTFGGANEVSLIQLATWDDVYMIDVMVSQLEPLDWAALAKNVFNRDDVLKLS 518
Query: 187 HGSDNDVMWLQR---DFHIYV-----------------VNLFDTAKACEVLSKPQKSLAY 226
D+ Q+ F++ V FD+ + ++LA
Sbjct: 519 FAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWRHVERFDSFRFPYHEESVNQNLAN 578
Query: 227 LLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAEL 276
L+ G +K Q +W QRPL E L+YA DA LL I + +L
Sbjct: 579 LVRLCLGKKLDKSNQFSNWAQRPLRKEQLRYAALDAFCLLEIYDAIEKQL 628
>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443 OS=Drosophila
melanogaster GN=CG14443 PE=3 SV=1
Length = 438
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 571 KNICVSCGEGNHYLRYRIIPSCYRIHFPEQLKSHRSHDIVLLCVDCHEVA 620
KNI + G+G ++P ++H L H+ IVL+ VDC E A
Sbjct: 70 KNIVMISGKGTGKTLGYLLPGIMKMHNQRGLMQHKKGPIVLILVDCREAA 119
>sp|Q5ASG9|PGLX1_EMENI Exopolygalacturonase X-1 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pgaX-1
PE=1 SV=1
Length = 434
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 28/127 (22%)
Query: 313 IESYPGEAAASSIFFRLLNGQGGVSSISSVT-QDLVRRLCAWRDLMARVHDESLRFVLSD 371
I+ +PG A+A S L G GG+ S+S++T +D+ W + + +
Sbjct: 304 IKVWPGVASAMS---EDLQGGGGLGSVSNITYEDMYIENVDWAIEITQCY---------G 351
Query: 372 QAIIALANKAPANRT--DVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQVCNN 429
Q + L N+ P+N T DVY S++ S+ P+ +VCS D VC+N
Sbjct: 352 QKNMTLCNEYPSNLTISDVYI------SNMYGTTSSARDPNIGTIVCSSPD-----VCSN 400
Query: 430 --VENLD 434
VEN+D
Sbjct: 401 IYVENID 407
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 141 RSFLGFTALIQIS-TEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRD 199
R LG ALIQ+ +E + YL ++ L+ + V K G + D L RD
Sbjct: 91 RGKLGKVALIQLCVSESKCYLFHVSSMSVFPQGLKMLLENKAVKKAGVGIEGDQWKLLRD 150
Query: 200 FHIYVVNLFDTAKACEVLSKPQK-----SLAYLLETYCG--VATNKFLQREDWRQRPLPA 252
F I + N + +V +K K SL L++ G + +K ++ +W + PL
Sbjct: 151 FDIKLKNFVELT---DVANKKLKCTETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTE 207
Query: 253 EMLQYAQTDAH--YLLY 267
+ YA TDA+ +++Y
Sbjct: 208 DQKLYAATDAYAGFIIY 224
>sp|Q07KK8|RPOC_RHOP5 DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain BisA53) GN=rpoC PE=3 SV=1
Length = 1400
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 270 KCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYP-----GEAAASS 324
+ L E +QQ N+ +K+N V++A + + EI + GEA +S
Sbjct: 658 RTLAKEFEQQYNDGLITHGEKYNKVVDAWSKCTKKISEDMMTEISAVKKNPKGGEAQINS 717
Query: 325 IFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESL 365
IF +G G +QD +R+L R LMA+ E +
Sbjct: 718 IFMMSNSGARG-------SQDQMRQLAGMRGLMAKPSGEII 751
>sp|Q211D9|RPOC_RHOPB DNA-directed RNA polymerase subunit beta' OS=Rhodopseudomonas
palustris (strain BisB18) GN=rpoC PE=3 SV=1
Length = 1401
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 270 KCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYP-----GEAAASS 324
+ L E +QQ N+ +K+N V++A + + EI + GEA +S
Sbjct: 658 RTLAKEFEQQYNDGLITHGEKYNKVVDAWSKCTKKISEDMMTEISAVKKNPKGGEAQINS 717
Query: 325 IFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDE 363
IF +G G +QD +R+L R LMA+ E
Sbjct: 718 IFMMSNSGARG-------SQDQMRQLAGMRGLMAKPSGE 749
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 340,583,634
Number of Sequences: 539616
Number of extensions: 14550757
Number of successful extensions: 35191
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 35111
Number of HSP's gapped (non-prelim): 61
length of query: 914
length of database: 191,569,459
effective HSP length: 127
effective length of query: 787
effective length of database: 123,038,227
effective search space: 96831084649
effective search space used: 96831084649
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)