Query 002503
Match_columns 914
No_of_seqs 398 out of 1748
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 17:36:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002503.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1220-1224//hhsearch_pdb/002503hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 1.0 1 1 477.7 35.6 354 45-432 1-401 (428)
2 2hbj_A Exosome complex exonucl 1.0 1 1 452.6 37.0 356 45-433 2-386 (410)
3 1yt3_A Ribonuclease D, RNAse D 1.0 1 1 332.9 32.6 285 108-434 2-287 (375)
4 3cym_A Uncharacterized protein 1.0 1 1 322.0 28.1 307 106-436 15-329 (440)
5 2e6m_A Werner syndrome ATP-dep 1.0 1 1 214.7 17.1 184 105-297 13-207 (208)
6 1vk0_A Hypothetical protein; h 1.0 1 1 209.3 12.7 164 110-274 22-205 (206)
7 2kfn_A Klenow fragment of DNA 1.0 1 1 166.0 28.5 173 106-280 4-198 (605)
8 3pv8_A DNA polymerase I; DNA p 1.0 1 1 154.3 23.1 170 102-280 10-185 (592)
9 1x9m_A DNA polymerase; DNA plo 1.0 1 1 137.2 7.6 149 130-281 1-188 (698)
10 4dfk_A DNA polymerase I, therm 1.0 1 1 116.1 20.1 121 129-279 11-132 (540)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=1.00 E-value=1 Score=477.71 Aligned_cols=354 Identities=34% Similarity=0.558 Sum_probs=300.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------------------------------CCCCCCC
Q ss_conf 977742234644778999997348898----------------------------------------------9999999
Q 002503 45 SEPKPQHNFKRVLADNSYSPFKHANKE----------------------------------------------KSSGSHP 78 (914)
Q Consensus 45 ~~~kPQ~~F~~~~~dns~~pf~p~~~~----------------------------------------------~~~~~hP 78 (914)
+|.|||+.|+++| |||.+||+|++.+ ...|.||
T Consensus 1 ~i~~pq~~f~~~~-dn~~~p~~p~~~~kp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp 79 (428)
T 3saf_A 1 SIIRPQLKFREKI-DNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHP 79 (428)
T ss_dssp CCCCGGGGCSSCC-CCSSSCCCCCCCCCTTCSSCCCGGGSGGGC-----------------------------CCSSSCT
T ss_pred CCCCCHHCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 9998143168899-899999877667897666877887522000013467432344201220000012234678888997
Q ss_pred CHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 39999863379998865578-77788899892996699999999999702574169874214678899189999984892
Q 002503 79 YELEITALLENPRPEFDFSN-VDLDLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKE 157 (914)
Q Consensus 79 Y~~Ei~~l~~~p~~~~~~~~-~~~~p~~~~~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt~~~ 157 (914)
|++||.++. +|..++.... ....|...++|.+|+|.++|..+++.+...+.||||+|+++.++|.+.+|+|||++.+.
T Consensus 80 y~~ei~~~~-~~~~~~~~~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~ 158 (428)
T 3saf_A 80 YQYELNHFT-PADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTE 158 (428)
T ss_dssp THHHHHTCC-CCHHHHSCCCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSSC
T ss_pred HHHHHHCCC-CCHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEEECCC
T ss_conf 099984499-9989908688977889888973797999999999998740883799988657877898689999996895
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 69996777541156478724199973998420685999999619973707303658888099998899999998299678
Q 002503 158 DYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 237 (914)
Q Consensus 158 ~yIID~laL~d~l~~L~eiLaDp~IvKV~Hgak~Di~~LqrdfGI~v~niFDTqlAAyLLg~~~~SLa~Lve~yLgv~ld 237 (914)
+|+||++++...+..|+++|+|++|+||+|++++|+.+|++++|+.+.++|||++|+|+|+++.+||++|+++|+|+.++
T Consensus 159 ~~lidpl~l~~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~ 238 (428)
T 3saf_A 159 DFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSN 238 (428)
T ss_dssp EEEEETTTTGGGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCC
T ss_pred EEEEEECCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEECHHHHHHHCCCCCCHHHHHHHHCCCCCC
T ss_conf 79998246343699999997399954999626999999999709976866634057987398987899999998498777
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 45543446689999988999987459999999999999998299999899623889999964434456544312334799
Q 002503 238 KFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYP 317 (914)
Q Consensus 238 K~~Q~sDWr~RPLs~eql~YAa~Da~yLL~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~~~~s~~~~l~~Y~k~~~~~p 317 (914)
|+.+.+||..|||+++|+.||+.||++++.||+.|..+|.+.|... .+|+..++.++..+|++.|.++.....
T Consensus 239 K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T 3saf_A 239 KQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQ-------PVQLQVVWQRSRDICLKKFIKPIFTDE 311 (428)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSC-------SHHHHHHHHHHHHHTTCCCCCCCCCTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5333366445899889999999999999999999999998668864-------208999999989999875047888840
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 63101357887404899988889789999999999999999980988576557689999998399998899999741277
Q 002503 318 GEAAASSIFFRLLNGQGGVSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADS 397 (914)
Q Consensus 318 g~~~~~~~~~r~l~~~~~~~~~~~~~l~vlr~L~~WRD~~AR~~Des~~~VL~d~~L~~LA~~~P~s~~~L~~~i~~~d~ 397 (914)
.|.. .|++.+ +.+++++++++++|+.||+.+||++|+|+++||+|++|++||+.+|++..+|.++.
T Consensus 312 ---~~~~-~~~~~~-----~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~----- 377 (428)
T 3saf_A 312 ---SYLE-LYRKQK-----KHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACC----- 377 (428)
T ss_dssp ---GGGH-HHHTTC-----CCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTC-----
T ss_pred ---CHHH-HHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCCHHHHHHCC-----
T ss_conf ---4999-998704-----67886799999999999999999749894777778999999997899999997566-----
Q ss_pred CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 53334457889888710203288899999987642
Q 002503 398 DVDCLNLSSSLPSPSPVVCSHLDDVERQVCNNVEN 432 (914)
Q Consensus 398 ~~~~~~l~~~~~~~sp~Vr~hi~eI~~lI~~a~~~ 432 (914)
+...+.++.|.++++.+|+.+...
T Consensus 378 -----------g~~~~~~r~~g~~~l~~I~~a~~~ 401 (428)
T 3saf_A 378 -----------NPVPPLVRQQINEMHLLIQQAREM 401 (428)
T ss_dssp -----------SSCCHHHHHTHHHHHHHHHHHHTS
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf -----------988799999999999999999748
No 2
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=1.00 E-value=1 Score=452.55 Aligned_cols=356 Identities=35% Similarity=0.520 Sum_probs=291.9
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCC---------------------CCCCCCCCHHHHHHCCCCCCCCCCCCC-CCC
Q ss_conf 977742234644778999-997348898---------------------999999939999863379998865578-777
Q 002503 45 SEPKPQHNFKRVLADNSY-SPFKHANKE---------------------KSSGSHPYELEITALLENPRPEFDFSN-VDL 101 (914)
Q Consensus 45 ~~~kPQ~~F~~~~~dns~-~pf~p~~~~---------------------~~~~~hPY~~Ei~~l~~~p~~~~~~~~-~~~ 101 (914)
+|+|||+.|++++ |||. +||+|++.+ .+.+.|||++||.++.+ |..++.... .+.
T Consensus 2 ~~~~pq~~f~~~~-dn~~~~~f~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~hpy~~ei~~~~~-~~~~~~~~~~~~~ 79 (410)
T 2hbj_A 2 MVEKPQLKFKSPI-DNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEY-SPEILQIREEIPS 79 (410)
T ss_dssp CCCCGGGGCSSCC-CCCCCSSCCCCCCCCTTCSSCHHHHSSCCCCCSSSCSCCCCTTHHHHHHSCC-CGGGSSCCCCCCC
T ss_pred CCCCCHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCC-CHHHHCCCCCCCC
T ss_conf 9898244149888-9999999865435687666888887503754345775679976888853889-9788255789888
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 88899892996699999999999702574169874214678899189999984892699967775411564787241999
Q 002503 102 DLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPG 181 (914)
Q Consensus 102 ~p~~~~~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt~~~~yIID~laL~d~l~~L~eiLaDp~ 181 (914)
.+...+++.+|++.+++..+++.+...+.||||+|+.++++|.+.+|+|||++.+..|+||++.+...+..|+++|+|++
T Consensus 80 ~~~~~~~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~ 159 (410)
T 2hbj_A 80 KSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPS 159 (410)
T ss_dssp CCGGGCCCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTT
T ss_pred CCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 88677975786899999999998864890589865447757888689999998991899964032435899999975999
Q ss_pred CEEEEECHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 73998420685999999619973707303658888099998899999998299678455434466899999889999874
Q 002503 182 VCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTD 261 (914)
Q Consensus 182 IvKV~Hgak~Di~~LqrdfGI~v~niFDTqlAAyLLg~~~~SLa~Lve~yLgv~ldK~~Q~sDWr~RPLs~eql~YAa~D 261 (914)
|.||+|++++|+.+|++++|+.+.++|||++|+|+|+++.+||++|+++|+|+.++|+.+.+||..|||+++|+.||+.|
T Consensus 160 i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~D 239 (410)
T 2hbj_A 160 IVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARAD 239 (410)
T ss_dssp SEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHH
T ss_pred CEEEEEEHHHHHHHHHHHCCCCCCCEEECHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 65999743999999999759986877884789998588964899999998199888656656787799998999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------CCHHHHHHHHHCCCCC
Q ss_conf 5999999999999999829999989962388999996443445654431233479963------1013578874048999
Q 002503 262 AHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGE------AAASSIFFRLLNGQGG 335 (914)
Q Consensus 262 a~yLL~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~~~~s~~~~l~~Y~k~~~~~pg~------~~~~~~~~r~l~~~~~ 335 (914)
|++++.||+.|..+|.+.| ++.|+.++|+. +|.+.|+.....++.. .......|+++++..
T Consensus 240 a~~ll~L~~~L~~~L~~~g---------~~~~~~~e~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 306 (410)
T 2hbj_A 240 THFLLNIYDQLRNKLIESN---------KLAGVLYESRN---VAKRRFEYSKYRPLTPSSEVYSPIEKESPWKILMYQY- 306 (410)
T ss_dssp HHTHHHHHHHHHHHHHHTT---------CHHHHHHHHHH---HHHCEECCGGGCCSSCCSSEECCCCSSSSSSSCSSCS-
T ss_pred HHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHH---HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-
T ss_conf 9999999999999999668---------56768999999---9998865102355555532235776267899875313-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88889789999999999999999980988576557689999998399998899999741277533344578898887102
Q 002503 336 VSSISSVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVV 415 (914)
Q Consensus 336 ~~~~~~~~l~vlr~L~~WRD~~AR~~Des~~~VL~d~~L~~LA~~~P~s~~~L~~~i~~~d~~~~~~~l~~~~~~~sp~V 415 (914)
++++++++++++|++||+.+||++|+|+++||+|++|++||+.+|++.++|.+.- +.....+
T Consensus 307 --~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~----------------g~~~~~~ 368 (410)
T 2hbj_A 307 --NIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLT----------------NGVTEHV 368 (410)
T ss_dssp --CCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCT----------------TCCCHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCCHHHHHHCC----------------CCCHHHH
T ss_conf --7998899999999999999999809897478888999999996899999997577----------------9888999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 032888999999876422
Q 002503 416 CSHLDDVERQVCNNVENL 433 (914)
Q Consensus 416 r~hi~eI~~lI~~a~~~~ 433 (914)
+.+.++++.+|+.+.+..
T Consensus 369 ~~~g~~~l~~I~~~~~~~ 386 (410)
T 2hbj_A 369 RQNAKLLANLIRDALRNI 386 (410)
T ss_dssp HHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 998999999999987453
No 3
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=1.00 E-value=1 Score=332.90 Aligned_cols=285 Identities=22% Similarity=0.304 Sum_probs=243.7
Q ss_pred CEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 92996699999999999702574169874214678899189999984892699967775411564787241999739984
Q 002503 108 SFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFH 187 (914)
Q Consensus 108 ~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt~~~~yIID~laL~d~l~~L~eiLaDp~IvKV~H 187 (914)
++.+|+|.+++..+++.+...+.+|+|+|+.+.++|.+.+|++||++++..|+||+..+. .+..|+++|+|++|.||+|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv~h 80 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKFLH 80 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEEES
T ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEECCCCC-CHHHHHHHHCCCCCEEEEE
T ss_conf 728969899999999997279969998410688768986589999618967999578888-7699999976999609996
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCC-CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHH
Q ss_conf 206859999996199737073036588880999-9889999999829967845543446689999988999987459999
Q 002503 188 GSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKP-QKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLL 266 (914)
Q Consensus 188 gak~Di~~LqrdfGI~v~niFDTqlAAyLLg~~-~~SLa~Lve~yLgv~ldK~~Q~sDWr~RPLs~eql~YAa~Da~yLL 266 (914)
++++|+.+|++++|+.+.++|||++|+|+||++ .+||+.|+++|+|+.++|+.+.+||..|||+++|+.||+.||++++
T Consensus 81 ~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~ 160 (375)
T 1yt3_A 81 AGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL 160 (375)
T ss_dssp SCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHH
T ss_pred EHHHHHHHHHHHCCCCCCCEEECHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 37999999999759988867876788987599987049999999859987978665789999999899999998799999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 99999999999829999989962388999996443445654431233479963101357887404899988889789999
Q 002503 267 YIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSISSVTQDL 346 (914)
Q Consensus 267 ~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~~~~s~~~~l~~Y~k~~~~~pg~~~~~~~~~r~l~~~~~~~~~~~~~l~v 346 (914)
.||+.|.++|.+.| +.+|++++++.. +...+... .+. ..|+++++. ++++++++++
T Consensus 161 ~L~~~L~~~L~~~g---------~~~l~~~e~E~p---l~~~~~~~---~~~------~~~~~~~~~---~~l~~~~~~~ 216 (375)
T 1yt3_A 161 PITAKLMVETEASG---------WLPAALDECRLM---QMRRQEVV---APE------DAWRDITNA---WQLRTRQLAC 216 (375)
T ss_dssp HHHHHHHHHHHHTT---------CHHHHHHHHHHH---HHHHHCCC---CGG------GGGGGSTTG---GGSCHHHHHH
T ss_pred HHHHHHHHHHHHCC---------CHHHHHHHHHHH---HHHCCCCC---CCH------HHHHHCCCC---CCCCHHHHHH
T ss_conf 99999999998758---------599999999999---83313689---945------899862572---2189899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHH
Q ss_conf 99999999999998098857655768999999839999889999974127753334457889888710203288899999
Q 002503 347 VRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDVDCLNLSSSLPSPSPVVCSHLDDVERQV 426 (914)
Q Consensus 347 lr~L~~WRD~~AR~~Des~~~VL~d~~L~~LA~~~P~s~~~L~~~i~~~d~~~~~~~l~~~~~~~sp~Vr~hi~eI~~lI 426 (914)
+++|+.||+.+||++|+|+++|++|..|++||..+|++.+++.+. .- ....++.+.++++.+|
T Consensus 217 ~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~----------------~~~~~~~~g~~~l~~i 279 (375)
T 1yt3_A 217 LQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GL----------------SGSEIRFHGKTLLALV 279 (375)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TC----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCHHHHHHC-CC----------------CHHHHHHHHHHHHHHH
T ss_conf 999999999999980979665787899999999789999999866-89----------------7689999999999999
Q ss_pred HHHHHHHH
Q ss_conf 98764224
Q 002503 427 CNNVENLD 434 (914)
Q Consensus 427 ~~a~~~~d 434 (914)
..+....+
T Consensus 280 ~~~~~~~~ 287 (375)
T 1yt3_A 280 EKAQTLPE 287 (375)
T ss_dssp HHHHHSCG
T ss_pred HHHHHCCH
T ss_conf 99873998
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=1.00 E-value=1 Score=321.97 Aligned_cols=307 Identities=21% Similarity=0.209 Sum_probs=242.6
Q ss_pred CCCEEEECCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCEEEEEEEECCC-EEEEECCCCC---CHHHHHHHHHCCC
Q ss_conf 98929966999999999997025-74169874214678899189999984892-6999677754---1156478724199
Q 002503 106 SDSFVWVETKSQLNELANALSKE-FFFAVDTEQHSLRSFLGFTALIQISTEKE-DYLVDTIALH---DEISILQPFFADP 180 (914)
Q Consensus 106 ~~~~~~IdT~e~L~~lle~L~~a-~~IAVDlE~~s~rsy~g~lcLIQISt~~~-~yIID~laL~---d~l~~L~eiLaDp 180 (914)
++.+.+|++.+++.++++.+... +.||||+|+.+.++|.+.+|+|||++.+. +|+||++.+. ..+..|+++|+|+
T Consensus 15 ~~~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~ 94 (440)
T 3cym_A 15 EGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA 94 (440)
T ss_dssp TCCCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC
T ss_pred CCCCEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHCCC
T ss_conf 89977658999999999999716985999955447888888879999997897479997577443446779999997799
Q ss_pred CCEEEEECHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 97399842068599999961997370730365888809999889999999829967845543446689999988999987
Q 002503 181 GVCKVFHGSDNDVMWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQT 260 (914)
Q Consensus 181 ~IvKV~Hgak~Di~~LqrdfGI~v~niFDTqlAAyLLg~~~~SLa~Lve~yLgv~ldK~~Q~sDWr~RPLs~eql~YAa~ 260 (914)
.||+|++++|+.+|. ++|+.+.++|||++|+|+|+++.+||+.|++.|+|+.++|+.+.+||..|||+++|+.||+.
T Consensus 95 --~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~ 171 (440)
T 3cym_A 95 --VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAAL 171 (440)
T ss_dssp --EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHH
T ss_pred --CEEEECCHHHHHHHH-HCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf --999975889999999-75996774512999999848898789999999939976544444788678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 45999999999999999829999989962388999996443445654431233479963101357887404899988889
Q 002503 261 DAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEASRRSNTVCLQVYTKEIESYPGEAAASSIFFRLLNGQGGVSSIS 340 (914)
Q Consensus 261 Da~yLL~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~~~~s~~~~l~~Y~k~~~~~pg~~~~~~~~~r~l~~~~~~~~~~ 340 (914)
||++++.||+.|..+|.+.| ...|+.++|.. +|...+.++.. + .. .|+++++.+.. ..+
T Consensus 172 Da~~Ll~L~~~L~~~L~~~g---------~~~l~~~e~~~---l~~~~~~~~~~--~-~~-----~~~~~~~~~~l-~~~ 230 (440)
T 3cym_A 172 DVELLIELETKMRAELKRQG---------KMEWAQEEFDY---ALKEGLGPRKE--H-LI-----PWMHVSHITEV-MRD 230 (440)
T ss_dssp HHHTHHHHHHHHHHHHHHHT---------CHHHHHHHHHH---HHHHHSSSCCC--C-SS-----GGGCCTTGGGG-TTC
T ss_pred HHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHH---HHCCCCCCCCC--C-HH-----HHHHHCCCCCC-CCC
T ss_conf 99999999999999998757---------47899988799---85320036777--5-57-----88874023335-799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCC--CCCCCCCCCCCCCHHHCC-
Q ss_conf 78999999999999999998098857655768999999839999889999974127753--334457889888710203-
Q 002503 341 SVTQDLVRRLCAWRDLMARVHDESLRFVLSDQAIIALANKAPANRTDVYTTIAQADSDV--DCLNLSSSLPSPSPVVCS- 417 (914)
Q Consensus 341 ~~~l~vlr~L~~WRD~~AR~~Des~~~VL~d~~L~~LA~~~P~s~~~L~~~i~~~d~~~--~~~~l~~~~~~~sp~Vr~- 417 (914)
+++++++++|+.||+.+||++|+|+++||+|..|++||..+|++.+++.+.-.-...-. -+..-.......+|+++.
T Consensus 231 ~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 310 (440)
T 3cym_A 231 RQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKI 310 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCHHHHHHCCCCCCHHEECCCCHHHHHHCCCCHHHHHH
T ss_conf 88999999999999999999498962787799999999978999999975779781010015612443311123466654
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 2888999999876422489
Q 002503 418 HLDDVERQVCNNVENLDDI 436 (914)
Q Consensus 418 hi~eI~~lI~~a~~~~ddi 436 (914)
+.+.++.+|+++....++.
T Consensus 311 ~~~~~l~~i~~~~~~~~~~ 329 (440)
T 3cym_A 311 KPSMWKNIIQDALALPPSE 329 (440)
T ss_dssp CHHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHCCHHH
T ss_conf 3899999999987299856
No 5
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=1.00 E-value=1 Score=214.72 Aligned_cols=184 Identities=22% Similarity=0.188 Sum_probs=159.5
Q ss_pred CCCCEEEECCHHHHH----HHHHHHHCCCCCEEEEEECCC--CCCCCCEEEEEEEEC-CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 998929966999999----999997025741698742146--788991899999848-9269996777541156478724
Q 002503 105 RSDSFVWVETKSQLN----ELANALSKEFFFAVDTEQHSL--RSFLGFTALIQISTE-KEDYLVDTIALHDEISILQPFF 177 (914)
Q Consensus 105 ~~~~~~~IdT~e~L~----~lle~L~~a~~IAVDlE~~s~--rsy~g~lcLIQISt~-~~~yIID~laL~d~l~~L~eiL 177 (914)
.+..+.+|+|++++. .+++.+...+.+|+|+|+.+. +++.+.+|++||++. +.+|+||+..+...+..|+++|
T Consensus 13 f~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~L~~lL 92 (208)
T 2e6m_A 13 FPGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLL 92 (208)
T ss_dssp CCSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHHHHHH
T ss_pred CCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 69868999679999999999999864599899984567878888879738999932899499998962334249999996
Q ss_pred CCCCCEEEEECHHHHHHHHHHHCCCCCCEEEE-HHHHHHHCCCC-CCCHHHHHHHHCCCCCCC--CCCCCCCCCCCCCHH
Q ss_conf 19997399842068599999961997370730-36588880999-988999999982996784--554344668999998
Q 002503 178 ADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFD-TAKACEVLSKP-QKSLAYLLETYCGVATNK--FLQREDWRQRPLPAE 253 (914)
Q Consensus 178 aDp~IvKV~Hgak~Di~~LqrdfGI~v~niFD-TqlAAyLLg~~-~~SLa~Lve~yLgv~ldK--~~Q~sDWr~RPLs~e 253 (914)
+|++|.||+|+++.|+.+|.+++|+.+.++|| |++|+|+|++. .+||+.|+++|++..+.| ..+.+||..|||+++
T Consensus 93 ~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~ 172 (208)
T 2e6m_A 93 ENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED 172 (208)
T ss_dssp TCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHH
T ss_pred CCCCCEEEEEEEHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHH
T ss_conf 69992599980589999999778998777777899999870688885699999997598757898821078899999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 89999874599999999999999982999998996238899999
Q 002503 254 MLQYAQTDAHYLLYIAKCLVAELKQQGNENSYCPDDKFNFVLEA 297 (914)
Q Consensus 254 ql~YAa~Da~yLL~Lyd~L~~eL~e~g~~~~~~p~~~~~~v~e~ 297 (914)
|+.||+.||++++.|++.|..+|.+.+ ++.|..|+
T Consensus 173 q~~YAa~Da~~~~~L~~~L~~~L~~~~---------~~~~~~~~ 207 (208)
T 2e6m_A 173 QKLYAATDAYAGLIIYQKLGNLGDTVQ---------VFALNKAE 207 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHH---------HHHHCCCC
T ss_conf 999999999999999999984310023---------33205466
No 6
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=1.00 E-value=1 Score=209.33 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=137.8
Q ss_pred EEECCHHHHHHHHHHH------HCCCCCEEEEEECCC------CCCC--CCEEEEEEEECCCEEEEECCC-CCCHHHHHH
Q ss_conf 9966999999999997------025741698742146------7889--918999998489269996777-541156478
Q 002503 110 VWVETKSQLNELANAL------SKEFFFAVDTEQHSL------RSFL--GFTALIQISTEKEDYLVDTIA-LHDEISILQ 174 (914)
Q Consensus 110 ~~IdT~e~L~~lle~L------~~a~~IAVDlE~~s~------rsy~--g~lcLIQISt~~~~yIID~la-L~d~l~~L~ 174 (914)
.+|.+.+++..+++.+ ....+||||+||... ++++ +.+|+|||++++.+++|++.. +...+..|.
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~L~ 101 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDLY 101 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHHH
T ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHHHH
T ss_conf 88866889999999998754423897899980105777655555678888558999952997699952665771379999
Q ss_pred HHHCCCCCEEEEECHHHHHHHHHHHCCCCCCEEEEHH-HHHHHCCC---CCCCHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 7241999739984206859999996199737073036-58888099---99889999999829967-8455434466899
Q 002503 175 PFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLFDTA-KACEVLSK---PQKSLAYLLETYCGVAT-NKFLQREDWRQRP 249 (914)
Q Consensus 175 eiLaDp~IvKV~Hgak~Di~~LqrdfGI~v~niFDTq-lAAyLLg~---~~~SLa~Lve~yLgv~l-dK~~Q~sDWr~RP 249 (914)
++|+||+|+||||++++|+..|+++||+.+.++|||+ +|+.++|. ...||+.|+++++|+.+ +|..+++||.. |
T Consensus 102 ~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~-p 180 (206)
T 1vk0_A 102 RFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK-A 180 (206)
T ss_dssp HHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG-S
T ss_pred HHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-C
T ss_conf 996499925999660999999998659985883359999999709887787239999999939867899852187898-4
Q ss_pred CCHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 9998899998745999999999999
Q 002503 250 LPAEMLQYAQTDAHYLLYIAKCLVA 274 (914)
Q Consensus 250 Ls~eql~YAa~Da~yLL~Lyd~L~~ 274 (914)
|+++|+.||+.||+|++.||+.|.+
T Consensus 181 Ls~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 181 GPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999970
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=1.00 E-value=1 Score=165.98 Aligned_cols=173 Identities=22% Similarity=0.246 Sum_probs=144.5
Q ss_pred CCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEE-CCCEEEEECCC----------CCCHHHHHH
Q ss_conf 9892996699999999999702574169874214678899189999984-89269996777----------541156478
Q 002503 106 SDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQIST-EKEDYLVDTIA----------LHDEISILQ 174 (914)
Q Consensus 106 ~~~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt-~~~~yIID~la----------L~d~l~~L~ 174 (914)
+..|.+|++.+++.++++.+...+.+++|+|+.+.+++.+.++.+|+++ .+..++|.... ..+.+..|.
T Consensus 4 ~~~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 4 YDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (605)
T ss_dssp SSSSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred HHHEEEECCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 33627826799999999741437769999943898746674579999982896799823521135532137899999999
Q ss_pred HHHCCCCCEEEEECHHHHHHHHHHHCCCCCCE-EEEHHHHHHHCCCC--CCCHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 72419997399842068599999961997370-73036588880999--9889999999829967-------84554344
Q 002503 175 PFFADPGVCKVFHGSDNDVMWLQRDFHIYVVN-LFDTAKACEVLSKP--QKSLAYLLETYCGVAT-------NKFLQRED 244 (914)
Q Consensus 175 eiLaDp~IvKV~Hgak~Di~~LqrdfGI~v~n-iFDTqlAAyLLg~~--~~SLa~Lve~yLgv~l-------dK~~Q~sD 244 (914)
++|+|+++.||+|++++|+.+| +.+|+.+.+ +|||++|+|+|++. .++|+.|+++|+++.. .|+.+.++
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L-~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~ 162 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGIL-ANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHH-HTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCC
T ss_pred HHHCCCCCEEEEECCHHHHHHH-HHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCC
T ss_conf 9973899769997738999999-978998898620099999972999888999999999649876648987277855588
Q ss_pred CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHH-CC
Q ss_conf 6689999988999987459999999999999998-29
Q 002503 245 WRQRPLPAEMLQYAQTDAHYLLYIAKCLVAELKQ-QG 280 (914)
Q Consensus 245 Wr~RPLs~eql~YAa~Da~yLL~Lyd~L~~eL~e-~g 280 (914)
|..+|+ +++..||+.||.+++.|+..|..+|.+ .+
T Consensus 163 ~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~ 198 (605)
T 2kfn_A 163 FNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKG 198 (605)
T ss_dssp GGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 664899-999999999999999999999999997765
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=1.00 E-value=1 Score=154.31 Aligned_cols=170 Identities=13% Similarity=0.010 Sum_probs=139.7
Q ss_pred CCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 88899892996699999999999702574169874214678899189999984892699967775411564787241999
Q 002503 102 DLQRSDSFVWVETKSQLNELANALSKEFFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPG 181 (914)
Q Consensus 102 ~p~~~~~~~~IdT~e~L~~lle~L~~a~~IAVDlE~~s~rsy~g~lcLIQISt~~~~yIID~laL~d~l~~L~eiLaDp~ 181 (914)
.|..+..+..+++..+ .+ + ....++|+|+.+.+++.+.+|++++++.++.|+|+... ...+..|+++|+|++
T Consensus 10 ~~~~~~~~~~~~~~~~--~~---~--~~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~-~~~l~~Lk~lLed~~ 81 (592)
T 3pv8_A 10 KPLAKMAFTLADRVTE--EM---L--ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET-ALADPQFVAWLGDET 81 (592)
T ss_dssp ----CCCCEECSSCCG--GG---G--CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH-HTTCHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHCCCH--HH---H--CCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEECCCH-HHHHHHHHHHHHCCC
T ss_conf 2588857877611226--56---3--55767999976776676638999998389169972611-657999999970999
Q ss_pred CEEEEECHHHHHHHHHHHCCCCCC-EEEEHHHHHHHCCCC--CCCHHHHHHHHCCCCCCCCCCCCCCC---CCCCCHHHH
Q ss_conf 739984206859999996199737-073036588880999--98899999998299678455434466---899999889
Q 002503 182 VCKVFHGSDNDVMWLQRDFHIYVV-NLFDTAKACEVLSKP--QKSLAYLLETYCGVATNKFLQREDWR---QRPLPAEML 255 (914)
Q Consensus 182 IvKV~Hgak~Di~~LqrdfGI~v~-niFDTqlAAyLLg~~--~~SLa~Lve~yLgv~ldK~~Q~sDWr---~RPLs~eql 255 (914)
+.||+|++++|+.+| +.+|+.+. .+|||++|+|+|++. .++|+.|+++|+++.+++..+..+|. .+|..+.+.
T Consensus 82 i~KV~hn~K~Dl~vL-~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~ 160 (592)
T 3pv8_A 82 KKKSMFDSKRAAVAL-KWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLA 160 (592)
T ss_dssp SEEEESSHHHHHHHH-HHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHH
T ss_pred CEEEEECHHHHHHHH-HHCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHH
T ss_conf 769994369999999-9759877886603999999709998889999999997397776088861865112695579999
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9998745999999999999999829
Q 002503 256 QYAQTDAHYLLYIAKCLVAELKQQG 280 (914)
Q Consensus 256 ~YAa~Da~yLL~Lyd~L~~eL~e~g 280 (914)
.||+.||.+++.|++.|..+|.+.+
T Consensus 161 ~YAa~DA~~l~~L~~~L~~~L~e~~ 185 (592)
T 3pv8_A 161 EHLVRKAAAIWELERPFLDELRRNE 185 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999999999999999974022
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=1.00 E-value=1 Score=137.21 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=122.3
Q ss_pred CCEEEEEECCCCCCCCCEEEEEEEEC--CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECH-HHHHHHHHHHC------
Q ss_conf 41698742146788991899999848--9269996777541156478724199973998420-68599999961------
Q 002503 130 FFAVDTEQHSLRSFLGFTALIQISTE--KEDYLVDTIALHDEISILQPFFADPGVCKVFHGS-DNDVMWLQRDF------ 200 (914)
Q Consensus 130 ~IAVDlE~~s~rsy~g~lcLIQISt~--~~~yIID~laL~d~l~~L~eiLaDp~IvKV~Hga-k~Di~~Lqrdf------ 200 (914)
.++||+|..+...+...+|++|+... +..+++|+..+...+..|.++|+ +++.||+|++ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHH-CCCEEEECCCHHHHHHHHHHHHHHCCCC
T ss_conf 989983788867789979999999658884799784778999999999971-6985998188078999999745541368
Q ss_pred CCCCC--EEEEHHHHHHHCCCC--CCCHHHHHHHHC-------CCCC-----C-----------CCC--CC-CCCCCCCC
Q ss_conf 99737--073036588880999--988999999982-------9967-----8-----------455--43-44668999
Q 002503 201 HIYVV--NLFDTAKACEVLSKP--QKSLAYLLETYC-------GVAT-----N-----------KFL--QR-EDWRQRPL 250 (914)
Q Consensus 201 GI~v~--niFDTqlAAyLLg~~--~~SLa~Lve~yL-------gv~l-----d-----------K~~--Q~-sDWr~RPL 250 (914)
|+.+. .+|||++|+|+|++. .++|+.|+++|+ +..+ + |+. +. .+|.. +
T Consensus 80 Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~ 157 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN--F 157 (698)
T ss_dssp CCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS--C
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC--C
T ss_conf 95677886032999999858898889989999997020134314311335567888747421234632234688120--6
Q ss_pred CHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9988999987459999999999999998299
Q 002503 251 PAEMLQYAQTDAHYLLYIAKCLVAELKQQGN 281 (914)
Q Consensus 251 s~eql~YAa~Da~yLL~Lyd~L~~eL~e~g~ 281 (914)
++++..||+.||.+++.|+..|..+|.+.+.
T Consensus 158 ~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 158 NEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999999999999999999986567
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=1.00 E-value=1 Score=116.10 Aligned_cols=121 Identities=8% Similarity=-0.119 Sum_probs=103.6
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCEEE
Q ss_conf 74169874214678899189999984892699967775411564787241999739984206859999996199737073
Q 002503 129 FFFAVDTEQHSLRSFLGFTALIQISTEKEDYLVDTIALHDEISILQPFFADPGVCKVFHGSDNDVMWLQRDFHIYVVNLF 208 (914)
Q Consensus 129 ~~IAVDlE~~s~rsy~g~lcLIQISt~~~~yIID~laL~d~l~~L~eiLaDp~IvKV~Hgak~Di~~LqrdfGI~v~niF 208 (914)
+.+++|+|+.+.+++.+.+|++|+++.++.|+++ ..+..|.++|+| +.||+|++++|+. .+|+.+..+|
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~~f 79 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPPGD 79 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCBCC
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEECCCEEEEEH-----HHHHHHHHHHCC--CCEEEECCHHHHH----HCCCCCCCCE
T ss_conf 8569999745776675537899997399778702-----359999999757--8789723099999----7399878420
Q ss_pred EHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH-HHC
Q ss_conf 03658888099998899999998299678455434466899999889999874599999999999999-982
Q 002503 209 DTAKACEVLSKPQKSLAYLLETYCGVATNKFLQREDWRQRPLPAEMLQYAQTDAHYLLYIAKCLVAEL-KQQ 279 (914)
Q Consensus 209 DTqlAAyLLg~~~~SLa~Lve~yLgv~ldK~~Q~sDWr~RPLs~eql~YAa~Da~yLL~Lyd~L~~eL-~e~ 279 (914)
||++|+|+|++.+++|+.|+++|++. .+| +|..||.+++.|+..|.++| .+.
T Consensus 80 DT~laAyLL~p~~~~L~~La~~yl~~-~gk------------------~a~~DA~~t~~L~~~L~~~L~~~~ 132 (540)
T 4dfk_A 80 DPMLLAYLLDPSNTTPEGVARRYGGE-WTE------------------EAGERAALSERLFANLWGRLEGEE 132 (540)
T ss_dssp CHHHHHHHHCTTCCCHHHHHHHHTSC-CCS------------------CHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred EHHHHHHHHCCCCCCHHHHHHHHHHH-HCC------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 19999998588989999999997213-154------------------639999999999999999988520
Done!