Query 002505
Match_columns 914
No_of_seqs 417 out of 4005
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 16:11:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002505.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1225-1228//hhsearch_pdb/002505hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 1.0 1 1 857.5 61.6 766 31-865 1-814 (823)
2 3o21_A Glutamate receptor 3; p 1.0 1 1 417.2 41.8 374 29-428 2-380 (389)
3 4f11_A Gamma-aminobutyric acid 1.0 1 1 412.7 35.5 392 27-462 9-427 (433)
4 4gpa_A Glutamate receptor 4; P 1.0 1 1 405.2 41.6 379 29-432 2-382 (389)
5 3om0_A Glutamate receptor, ion 1.0 1 1 403.8 36.0 375 30-428 2-381 (393)
6 2e4u_A Metabotropic glutamate 1.0 1 1 400.6 43.5 395 27-465 9-486 (555)
7 3h6g_A Glutamate receptor, ion 1.0 1 1 400.0 37.3 376 30-430 2-385 (395)
8 1dp4_A Atrial natriuretic pept 1.0 1 1 395.8 38.4 387 31-464 1-423 (435)
9 3hsy_A Glutamate receptor 2; l 1.0 1 1 395.4 37.0 367 31-427 1-373 (376)
10 3sm9_A Mglur3, metabotropic gl 1.0 1 1 395.1 37.9 388 27-456 8-478 (479)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=857.46 Aligned_cols=766 Identities=19% Similarity=0.325 Sum_probs=647.6
Q ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 729999995179864125999999999988429999999599999930799-9698999999987239279994898067
Q 002505 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVI 109 (914)
Q Consensus 31 ~~i~IG~i~p~s~~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiG~~~s~~ 109 (914)
++|+||+++|+++. ....|+++|+|+||+++ ++|+++++|+++ ++..+..+++++++++|.+||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CCCEEEEEECCCCH---HHHHHHHHHHHHHHCCC-----EEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 95249999579986---99999999999985497-----38987898758888288899999987559289996897657
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99999831128741894015999976578894286048808889999999978297199999970887632399999997
Q 002505 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (914)
Q Consensus 110 ~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~~~l 189 (914)
+.+++++++.+++|+|+++ .+.. ..++++||+.|+ ++.+++++++++||++|++|+ |+++|....+.+++++
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEECC--CCCC--CCCCEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHHHHHH
T ss_conf 9999998622788635123--6777--777618996787---899999999977997899999-6772378999999875
Q ss_pred HHCCCEEEEEECCCCC--CCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 6226089896406999--99358999999850398729999818067999999978669777880999947431123678
Q 002505 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (914)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (914)
++.|+||+..+.++.. .+..|+..++.+++++++|+|++++...++..++++++++|+++++|+|+.++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCH-
T ss_conf 4369705999820378776615689999998735873999988778999999999972867898089995165455655-
Q ss_pred CCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8587236651024068987228937789999999874026-899999898725899977999999999986614998411
Q 002505 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR-NTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (914)
Q Consensus 268 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~~ 346 (914)
.+..+...|++++.++.++++.+++|.++|+++++. +++.....++.+++++||||+++|+|++++..++.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ----7762578783476423487427999999998614323577776554414689998999999999999861665336
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 4785332367898655653--33475279999988245478532139826997778744999911466389988428999
Q 002505 347 SEDSKLSELSRGDMRFSSV--SIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (914)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~~~~~i~~~~~~~~~~Vg~w~~~~~ 424 (914)
...+..|... ..|.+|+++.++|++++|+|++|++.||++|++.+..|+|++++++++++||.|++..+
T Consensus 300 ---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g 370 (823)
T 3kg2_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (823)
T ss_dssp ---------SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTE
T ss_pred ---------CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf ---------89998866788876664578999997356577666767899986654179999972788745787707988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCEEEC------CCCCEEEEE
Q ss_conf 62148865447999888764553202408985446984000489930799821546754617705------898606644
Q 002505 425 LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVFPNNGRHLRIGVPSQVIYPEFVAQG------KGTDKFSGY 498 (914)
Q Consensus 425 l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~~~~~~~g~~lrv~~~~~~~~~~~~~~~------~~~~~~~G~ 498 (914)
+....+ . .....|++|+|++... +||++.. ++++++.|+
T Consensus 371 ~~~~~~------------------------------~--~~~~~~~~l~v~~~~~---~P~~~~~~~~~~~~~~~~~~G~ 415 (823)
T 3kg2_A 371 MVLTED------------------------------D--TSGLEQKTVVVTTILE---SPYVMMKANHAALAGNERYEGY 415 (823)
T ss_dssp EEECCC------------------------------C--CSSCCCCCEEEEECCC---TTTSEECTTGGGCCGGGGEESH
T ss_pred CEECCC------------------------------C--CCCCCCCEEEEEEECC---CCCEEEECCCCCCCCCCCEEEE
T ss_conf 112147------------------------------6--6565797899999147---8848995374456789866888
Q ss_pred EHHHHHHHHHHCCCCCCEEEEE---CCC-CCCCCCHHHHHHHHHHCCCCEEEECEEEECCCCEEEEECCCEEECCEEEEE
Q ss_conf 2999999999799962479963---899-989999687999888083039962167714831023403430103269999
Q 002505 499 CIDVFTAVLELLPYAVPYKLVP---FGD-GHNSPKRFDLLRLVSEEVYDAAVGDFAITTERTKMVDFTQPYIESGLVVVA 574 (914)
Q Consensus 499 ~~dl~~~la~~l~~~~~~~~~~---~~~-~~~n~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~ft~p~~~~~~~~iv 574 (914)
|+|+++.+++++||++++..++ +|. ...|++|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++
T Consensus 416 ~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v 495 (823)
T 3kg2_A 416 CVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMI 495 (823)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCEECCHHHEEEEEECCCHHHCCEEEEE
T ss_conf 79999999997398579998268865665788885355787645045767852323032010048963004657779999
Q ss_pred ECCC-CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCC--------------CCCHHHHHHHHHHHH
Q ss_conf 4357-7768431002674557899999999988764210012389988998--------------874045899999986
Q 002505 575 PIKK-LNSNAWAFLNPFTPKMWCVTGIFFLVVGVVVWILEHRLNDDFRGPP--------------RRQIGTILWFSFSTL 639 (914)
Q Consensus 575 ~~~~-~~~~~~~~l~PF~~~~W~~il~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l 639 (914)
|++. ..++++.|+.||++.+|++++++++++++++|+++|..+.+|+.+. ..++.+++|++++++
T Consensus 496 ~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 575 (823)
T 3kg2_A 496 KKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAF 575 (823)
T ss_dssp ECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTS
T ss_pred ECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87776666500764678564899999999999999999985683530676544455556533344322777799999999
Q ss_pred HHCCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCC-CEEEEECCHHHHHHHHHCC
Q ss_conf 405766-65652035778988878865411234302464411545589899577661999-9679809515666443107
Q 002505 640 FFSHKE-RTVNSLSRLVLIIWLFVVLILTSSYTASLTSILTVEQLSSPIKDIQSLVASSD-PIGYQRGSFAENYLTDELN 717 (914)
Q Consensus 640 ~~~~~~-~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~-~i~~~~~s~~~~~l~~~~~ 717 (914)
++|+.. .|++.++|++.++|++++++++++|||+|+|+||++++.++|++++||.+++. ++++..++....++.+. +
T Consensus 576 ~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~-~ 654 (823)
T 3kg2_A 576 MQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS-K 654 (823)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC-C
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHC-C
T ss_conf 743888688652240699999999999999999988877203465789889899802887158998688289998861-1
Q ss_pred CCC-C----------CCCCCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHCC-CEEEEECCCCCCCCCEEEECCCC
Q ss_conf 887-7----------71007997899999726988897189992235599988247-30899466422345055633899
Q 002505 718 IDK-S----------RLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTR-CEFSIIGQEFTRIGWGFAFPRDS 785 (914)
Q Consensus 718 ~~~-~----------~~~~~~~~~~~~~~l~~~~~~g~~~a~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~s 785 (914)
... . ..+.+.+.+++++.+.+. ++.+|++.+.+.++|+..+. |+++.+++.+...++++++||+|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~s 731 (823)
T 3kg2_A 655 IAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGS 731 (823)
T ss_dssp CHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTC
T ss_pred CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC---CCCEEEEECHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCC
T ss_conf 237999999998569864347789999998625---88569990367899998548985488155234563367625998
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCC-CCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8816689999721104725899997738-8977888887--755650036505789999999999999999999999876
Q 002505 786 PLAVDMSIAILELSENGDLQRIHDKWLT-RSACSSQGAK--QEADQLHLKSFWGLFVLCGVACLLALLIYLIQIVRQFAR 862 (914)
Q Consensus 786 pl~~~in~~i~~l~e~G~~~~~~~~~~~-~~~c~~~~~~--~~~~~l~~~~~~g~f~il~~g~~ls~~vf~~e~~~~~~~ 862 (914)
||++.||.+|+++.|+|++++|.++|+. ...|...... ....+|+++++.|+|+++++|+++|+++|++|++|++++
T Consensus 732 pl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~ 811 (823)
T 3kg2_A 732 SLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRA 811 (823)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 58999999999998679399999865768998888876655667753525614089999989999999999999997220
Q ss_pred HHC
Q ss_conf 302
Q 002505 863 HYL 865 (914)
Q Consensus 863 ~~~ 865 (914)
.++
T Consensus 812 ~~~ 814 (823)
T 3kg2_A 812 EAK 814 (823)
T ss_dssp ---
T ss_pred HHH
T ss_conf 664
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=1.00 E-value=1 Score=417.16 Aligned_cols=374 Identities=16% Similarity=0.230 Sum_probs=321.2
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 99729999995179864125999999999988429999-999599999930799-9698999999987239279994898
Q 002505 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAI-LGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQF 106 (914)
Q Consensus 29 ~~~~i~IG~i~p~s~~~g~~~~~a~~~Aie~iN~~~~i-l~g~~i~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiG~~~ 106 (914)
.+++|+||+++|+++. ....|+++|+|+||+++++ |+|++|+++++|++| ++..++.++++|++++|.+||||.+
T Consensus 2 ~~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~ 78 (389)
T 3o21_A 2 FPNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYD 78 (389)
T ss_dssp CCSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCC
T ss_pred CCCEEEEEEEECCCCH---HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9852489999479987---7999999999997147645677717999987647898489999999887308099991797
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHH
Q ss_conf 06799999831128741894015999976578894286048808889999999978297199999970887632399999
Q 002505 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (914)
Q Consensus 107 s~~~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (914)
|..+.+++++++.+++|+|+++. +.++ ..+|.|++.|+ ++.++++++++++|++|++|+ |++||....+.+.
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~ 150 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEECCC--CCCC--CCCEEEEECCC---HHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHH
T ss_conf 03899999985547896460477--8766--77607997468---899999999967997799998-3807789999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99762260898964069999935899999985039872999981806799999997866977788099994743112367
Q 002505 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (914)
Q Consensus 187 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (914)
+.+++.|+||+..+.++. ....|++.++.+|+++++|+|++++...++..++++++++|++.++|+||+++.+....+.
T Consensus 151 ~~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 229 (389)
T 3o21_A 151 EAAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL 229 (389)
T ss_dssp HHHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC
T ss_pred HHHHCCCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCH
T ss_conf 976317976999971477-8707799999999728975999987889999999999972846687599981687140327
Q ss_pred CCCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 885872366510240689872289377899999998740268-9999989872589997799999999998661499841
Q 002505 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNIS 345 (914)
Q Consensus 267 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~ 345 (914)
........|++++..+.++++.+++|.++|+++++.+ ++.+...++.+++++||||+++++|++++..++.+..
T Consensus 230 -----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~ 304 (389)
T 3o21_A 230 -----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 304 (389)
T ss_dssp -----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf -----887467851489997469975699999999752532358888775330688999999999999999986172201
Q ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 14785332367898655--6533347527999998824547853213982699777874499991146638998842899
Q 002505 346 FSEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHS 423 (914)
Q Consensus 346 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~~~~~i~~~~~~~~~~Vg~w~~~~ 423 (914)
. .+.+..| +...+|.+|.++.++|++++|+|++|++.||++|++.+..|+|+++.++++++||.|++..
T Consensus 305 ~---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 305 R---------RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp --------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred C---------CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCC
T ss_conf 5---------8888767899998878748999999717666661423548999733646899997488861546986898
Q ss_pred CCCCC
Q ss_conf 96214
Q 002505 424 GLSVV 428 (914)
Q Consensus 424 ~l~~~ 428 (914)
||++.
T Consensus 376 g~~~~ 380 (389)
T 3o21_A 376 RFVPF 380 (389)
T ss_dssp EEECC
T ss_pred CCCCC
T ss_conf 84406
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=1.00 E-value=1 Score=412.73 Aligned_cols=392 Identities=20% Similarity=0.324 Sum_probs=329.2
Q ss_pred CCCCCEEEEEEEECCCC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCE
Q ss_conf 78997299999951798-----64125999999999988429999999599999930799969899999998723--927
Q 002505 27 STIPPVLNIGAVFALNS-----TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTLLEN--ETV 99 (914)
Q Consensus 27 ~~~~~~i~IG~i~p~s~-----~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~~~~~a~~~a~~li~~--~v~ 99 (914)
+...++|+||+++|+++ ..|.....|+++|+++||++ ++++|++|+++++|+++++..++.++++|+.+ +|.
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~ 87 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 699984699999970688777754163999999999998504-7999977889995488987899999999986499669
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
Q ss_conf 9994898067999998311287418940159999765-788942860488088899999999782971999999708876
Q 002505 100 AIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHG 178 (914)
Q Consensus 100 aiiG~~~s~~~~~va~~~~~~~ip~is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g 178 (914)
+||||.+|..+.+++++++.+++|+|+++++++.+++ ..+|++||+.|++..++.++++++++++|++|++|++|++||
T Consensus 88 aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 88 MVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp EEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf 99899743589999998875693599715688344464348866993586677899999999984993899999656146
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 32399999997622608989640699999358999999850398729999818067999999978669777880999947
Q 002505 179 RNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTD 258 (914)
Q Consensus 179 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 258 (914)
....+.+++.+++.|++|+..+.++ .|+..++.+++++++|+|++++...++..++++++++|+.+++++||+++
T Consensus 168 ~~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~ 242 (433)
T 4f11_A 168 SEVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPG 242 (433)
T ss_dssp HHHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 7899999999987696599986268-----37899999986279819999675799999999999849878976999867
Q ss_pred CCCCCCC--------CCCCCCHHHHHHCCCEEEEEEECCCC--------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 4311236--------78858723665102406898722893--------7789999999874026899999898725899
Q 002505 259 WLSSILD--------TDSQLHSEKMDDIQGVLTLRMYTQSS--------EEKRKFVTRWRHLTRRNTLNGPIGLNSFGLY 322 (914)
Q Consensus 259 ~~~~~~~--------~~~~~~~~~~~~~~G~~~~~~~~~~~--------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (914)
+...... ...+......+.++|++++.++.+.. +..++|.++|+++. .+..++.++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~------~~~~~~~~a~~ 316 (433)
T 4f11_A 243 WYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR------SGVGPSKFHGY 316 (433)
T ss_dssp CSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHH------TTSCCCTTHHH
T ss_pred CCHHHHHCCCCCCCCCCCCCHHHHHHHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHC------CCCCCCCCHHH
T ss_conf 215767404466788889788999999717788888633778875557788899999998743------78876630356
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf 97799999999998661499841147853323678986556--5333475279999988245478532139826997778
Q 002505 323 AYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFS--SVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLIN 400 (914)
Q Consensus 323 ~yDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~ 400 (914)
+||||+++++|++++..+.... +...+++ ....|.+++.+.++|++++|+|++|++.| ++|++.
T Consensus 317 ~YDAv~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~- 382 (433)
T 4f11_A 317 AYDGIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM- 382 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCEEEEE-ECCCEE-
T ss_conf 8999999999999999997405------------87775346535518999999999974689703058999-569541-
Q ss_pred CCEEEEEECCCCEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 744999911466389988428999-62148865447999888764553202408985446984
Q 002505 401 PAYEVINVIGTGSRRIGYWSNHSG-LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRG 462 (914)
Q Consensus 401 ~~~~i~~~~~~~~~~Vg~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~ 462 (914)
..|+|++++++++++||.|++..+ |.+ +.+.|.|||+.++..++
T Consensus 383 ~~~~I~~~~~g~~~~VG~~~~~~~~l~~------------------~~~~i~W~~~~~P~D~~ 427 (433)
T 4f11_A 383 GTIKFTQFQDSREVKVGEYNAVADTLEI------------------INDTIRFQGSEPPKDDY 427 (433)
T ss_dssp CEEEEEEEETTEEEEEEEEETTTTEEEE------------------CTTTCCCSSSSCCCSSG
T ss_pred EEEEEEEEECCCEEEEEEEECCCCEEEE------------------ECCCEECCCCCCCCCCC
T ss_conf 0689999778916899999778886897------------------27721888988798865
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=405.24 Aligned_cols=379 Identities=17% Similarity=0.234 Sum_probs=322.8
Q ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 997299999951798641259999999999884299999-9959999993079-99698999999987239279994898
Q 002505 29 IPPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAIL-GGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQF 106 (914)
Q Consensus 29 ~~~~i~IG~i~p~s~~~g~~~~~a~~~Aie~iN~~~~il-~g~~i~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiG~~~ 106 (914)
-|++|+||++||.++ .....|+++|+|+||++++++ ++.+|.+...|++ +++..+.+.++++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEEEEECCCC---HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 897679999976998---69999999999999838998899879999994678736999999999887459889991896
Q ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHH
Q ss_conf 06799999831128741894015999976578894286048808889999999978297199999970887632399999
Q 002505 107 SVIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALG 186 (914)
Q Consensus 107 s~~~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~ 186 (914)
|..+.+++++++.++||+++++++.+.. ..|++++| |. ++.++++++++++|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~--~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLR--PS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECS--CC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEECCCCCCCC--CCCCCCCC--CC---HHHHHHHHHHHCCCCEEEEEEECCHHH-HHHHHHH
T ss_conf 0899999999998378711034454444--66774436--77---899999999973896799997032466-7889999
Q ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99762260898964069999935899999985039872999981806799999997866977788099994743112367
Q 002505 187 DKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDT 266 (914)
Q Consensus 187 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 266 (914)
+.+.+.|++|+..+.++ ....++..++.+++.+++++|++.+...++..+++++.++|+++++++|++++++......
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHHCCCEEEEEEECC--CCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH
T ss_conf 88875396378875037--7604489999776505873799972325777999999983787886699993752122245
Q ss_pred CCCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88587236651024068987228937789999999874026899999898725899977999999999986614998411
Q 002505 267 DSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (914)
Q Consensus 267 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~~ 346 (914)
.+......|+.++....++++.+++|.++|++.+.......+..++.+++++||||+++|+|++++.++......
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -----555420464489975258976789999999998631124678982488999999999999999998742445444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 47853323678986556533347527999998824547853213982699777874499991146638998842899962
Q 002505 347 SEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSGLS 426 (914)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~~~~~i~~~~~~~~~~Vg~w~~~~~l~ 426 (914)
......+.|....+|++|..|.++|++++|+|++|+|.||++|+|.++.|+|+|++++++++||.|++.+||.
T Consensus 304 -------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~ 376 (389)
T 4gpa_A 304 -------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLV 376 (389)
T ss_dssp -------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred -------CCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCEE
T ss_conf -------6776654667775454099999999739433475458999999898777899998899789999998898928
Q ss_pred CCCCCC
Q ss_conf 148865
Q 002505 427 VVPPEA 432 (914)
Q Consensus 427 ~~~~~~ 432 (914)
+..+++
T Consensus 377 ~~~~~t 382 (389)
T 4gpa_A 377 LIQDRT 382 (389)
T ss_dssp ECCC--
T ss_pred ECCCCC
T ss_conf 778986
No 5
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=1.00 E-value=1 Score=403.84 Aligned_cols=375 Identities=19% Similarity=0.263 Sum_probs=318.1
Q ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEECCCCCH
Q ss_conf 972999999517986412599999999998842999999959999993079996-9899999998723927999489806
Q 002505 30 PPVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSR-FLGMVEALTLLENETVAIIGPQFSV 108 (914)
Q Consensus 30 ~~~i~IG~i~p~s~~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~~~-~~a~~~a~~li~~~v~aiiG~~~s~ 108 (914)
.++|+||+++|+++..|.....|+++|+|+||+++++++|++|+++++|+++++ ..+..+++++++++|.+||||.+|.
T Consensus 2 ~~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 2 LSSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSP 81 (393)
T ss_dssp CCEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCH
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 76315888742787443799999999999974371224684799999734888616999999987851968999999941
Q ss_pred -HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCE--EECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHH
Q ss_conf -7999998311287418940159999765788942--8604880888999999997829719999997088763239999
Q 002505 109 -IAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFF--VRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAAL 185 (914)
Q Consensus 109 -~~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~--~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~ 185 (914)
++.+++++++.+++|+|++++++. ....+|++ ||+.|++..++.++++++++++|++|++|++|++||....+.+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCC--CCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 2799999997256897583467767--40015654069936987899999999999679968999996743788899999
Q ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
Q ss_conf 99976226089896406999993589999998503987299998180679999999786697778809999474311236
Q 002505 186 GDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILD 265 (914)
Q Consensus 186 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~ 265 (914)
+.+.+.|++|.... ++ +..|++.++.+|+++++++|++++...++..++++++++|++++.|+|+++++.....+
T Consensus 160 -~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 234 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH 234 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCC
T ss_pred -HHHHCCCCEEEEEE-CC---CCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
T ss_conf -76411697589983-58---88778999999873597099997988899999999997586668707999425423334
Q ss_pred CCCCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7885872366510240689872289377899999998740268999-998987258999779999999999866149984
Q 002505 266 TDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRNTLN-GPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNI 344 (914)
Q Consensus 266 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~ 344 (914)
.. .......|++++..+.++++.+++|.++|+++++...+. +...++.+++++|||++++++|++++.....
T Consensus 235 l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~-- 307 (393)
T 3om0_A 235 LD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE-- 307 (393)
T ss_dssp CT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC--
T ss_pred HH-----HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 14-----44135770799998637860788889999987654036778899764789998689999999999764225--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 11478533236789865565333475279999988245478532139826997778744999911466389988428999
Q 002505 345 SFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (914)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~~~~~i~~~~~~~~~~Vg~w~~~~~ 424 (914)
....+..|....+|.+|.++.++|++++|+|++|++.||++|++.+..|+|++++++++++||.|++..|
T Consensus 308 ----------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 377 (393)
T 3om0_A 308 ----------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRT 377 (393)
T ss_dssp ----------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC--
T ss_pred ----------CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCC
T ss_conf ----------7678769998875657467999998278777543177589996566169999860688568646868778
Q ss_pred CCCC
Q ss_conf 6214
Q 002505 425 LSVV 428 (914)
Q Consensus 425 l~~~ 428 (914)
|.+.
T Consensus 378 l~~~ 381 (393)
T 3om0_A 378 LAMN 381 (393)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 0314
No 6
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=400.59 Aligned_cols=395 Identities=21% Similarity=0.345 Sum_probs=324.4
Q ss_pred CCCCCEEEEEEEECCCC-------------CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 78997299999951798-------------64125999999999988429999999599999930799969899999998
Q 002505 27 STIPPVLNIGAVFALNS-------------TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (914)
Q Consensus 27 ~~~~~~i~IG~i~p~s~-------------~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~~~~~a~~~a~~l 93 (914)
...+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.++
T Consensus 9 ~~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~ 88 (555)
T 2e4u_A 9 IKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEF 88 (555)
T ss_dssp EEECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred EECCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 51589999999988067788887655646422169999999999998479977889769899997899868999999999
Q ss_pred HH-------------------------CCCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCEEECCC
Q ss_conf 72-------------------------39279994898067999998311287418940159999765-78894286048
Q 002505 94 LE-------------------------NETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQ 147 (914)
Q Consensus 94 i~-------------------------~~v~aiiG~~~s~~~~~va~~~~~~~ip~is~~a~~~~l~~-~~~~~~~r~~p 147 (914)
++ ++|.+||||.+|..+.+++++++.+++|+|+++++++.|++ .++|++||+.|
T Consensus 89 l~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p 168 (555)
T 2e4u_A 89 VRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 168 (555)
T ss_dssp HHTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEECC
T ss_conf 75767566788752677765544456785599999887279999999970768756857758876688544887335179
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCC-CCCEEE
Q ss_conf 8088899999999782971999999708876323999999976226089896406999993589999998503-987299
Q 002505 148 SDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSS-MMSRIL 226 (914)
Q Consensus 148 ~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~~vi 226 (914)
++..++.+++++++++||++|++|++|++||....+.+++++++.|+||++.+.++...+..++..++.+++. ++++||
T Consensus 169 ~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vI 248 (555)
T 2e4u_A 169 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVV 248 (555)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 74889999999999869829999994283799999999999987896289999937887768999999997216888789
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCHHHHHH---------
Q ss_conf 99818067999999978669777880999947431123678858723665102406898722893778999---------
Q 002505 227 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKF--------- 297 (914)
Q Consensus 227 il~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f--------- 297 (914)
|+++...++..+++++.++|+ +++||+++.|....... ....+.++|++++.++..+.+.+++|
T Consensus 249 i~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~ 321 (555)
T 2e4u_A 249 VLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNN 321 (555)
T ss_dssp EEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEECCHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCHHH----CCCHHHCCEEEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf 999277999999999998668---82999805310331121----02121145489997446789767999964784558
Q ss_pred ------HHHHHHHHCC-----------CCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ------9999874026-----------8999998-----98725899977999999999986614998411478533236
Q 002505 298 ------VTRWRHLTRR-----------NTLNGPI-----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSEL 355 (914)
Q Consensus 298 ------~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 355 (914)
.+.|+..|+. |++.+.. .+..++..+||||+++|+|++++..+....
T Consensus 322 p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~----------- 390 (555)
T 2e4u_A 322 HRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ----------- 390 (555)
T ss_dssp TTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT-----------
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf 998799999999759999877766789997423033434333545016879999999999998501678-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHH-HHHHCCCC------CCCCC-EEECCCCCCCCCCEEEEEEC--CC--CEEEEEEECCCC
Q ss_conf 789865565333475279999-98824547------85321-39826997778744999911--46--638998842899
Q 002505 356 SRGDMRFSSVSIFNGGKMLLD-NILQVNMT------GVTGP-IKFTSDRDLINPAYEVINVI--GT--GSRRIGYWSNHS 423 (914)
Q Consensus 356 ~~~~~~~~~~~~~~~g~~l~~-~l~~~~f~------g~~G~-v~f~~~G~~~~~~~~i~~~~--~~--~~~~Vg~w~~~~ 423 (914)
....|...... ++++|.+ +|++++|+ |++|+ +.||++|++ ...|+|+|++ ++ .+++||.|++
T Consensus 391 --~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~-- 464 (555)
T 2e4u_A 391 --TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE-- 464 (555)
T ss_dssp --CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--
T ss_pred --CCCCCCCCCCC-CCCCCCHHHHHCEEECCCCCCCCCCCCEEEECCCCCC-CCEEEEEEEEECCCCEEEEEEEEECC--
T ss_conf --87666446789-8240127757132514544566889986897589985-32178999995699689999988616--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE
Q ss_conf 962148865447999888764553202408985446984000
Q 002505 424 GLSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWVF 465 (914)
Q Consensus 424 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~~~~ 465 (914)
+|.+ +...|.|++ .++|++.|.
T Consensus 465 ~l~i------------------~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 TLSL------------------DVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp SEEC------------------CGGGCCCTT--SSCCCCCSS
T ss_pred EEEE------------------ECCCCCCCC--CCCCCEEEC
T ss_conf 4788------------------031033577--887644317
No 7
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=1.00 E-value=1 Score=400.03 Aligned_cols=376 Identities=21% Similarity=0.273 Sum_probs=322.9
Q ss_pred CCEEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEECCCCC
Q ss_conf 9729999995179-86412599999999998842999999959999993079-996989999999872392799948980
Q 002505 30 PPVLNIGAVFALN-STIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTN-YSRFLGMVEALTLLENETVAIIGPQFS 107 (914)
Q Consensus 30 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiG~~~s 107 (914)
+++|+||+++|++ +..|.....|+++|+|+||++++++++.++++++.|.. .|+..+...++++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf 96137878853787666448999999999997468422577468879853587675899999998664394899999982
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 67999998311287418940159999765788942860488088899999999782971999999708876323999999
Q 002505 108 VIAHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGD 187 (914)
Q Consensus 108 ~~~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~~ 187 (914)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.++++++++++|++|++|+ |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCC-CCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE-ECHHHHHHHHHHHH
T ss_conf 589999999860799868504676655666-7518995588778999999999977984999999-78467899999998
Q ss_pred HHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 97622608989640699999358999999850398729999818067999999978669777880999947431123678
Q 002505 188 KLAEKRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (914)
Q Consensus 188 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (914)
.+++.|++|+... ++ .+..|+..++.+++++++++|++++...++..++++++++|++.+.|+|++++......+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred HHHCCCCEEEEEE-EC--CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEECHH
T ss_conf 6214895699999-27--98465999999986459759999898799999999999716357852899964750671057
Q ss_pred CCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC-CC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 85872366510240689872289377899999998740268-99----99989872589997799999999998661499
Q 002505 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TL----NGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGG 342 (914)
Q Consensus 268 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~----~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~ 342 (914)
. ......++.++..+.++++..++|.++|++++... +. .....++.++.++|||++++++|++++...
T Consensus 237 ~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~-- 309 (395)
T 3h6g_A 237 P-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM-- 309 (395)
T ss_dssp T-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC--
T ss_pred H-----HCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 7-----416763318999754895899999999874302367666777677754456799986899999999765407--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECC-CCCCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 8411478533236789865565333475279999988245478532139826-997778744999911466389988428
Q 002505 343 NISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTS-DRDLINPAYEVINVIGTGSRRIGYWSN 421 (914)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~-~G~~~~~~~~i~~~~~~~~~~Vg~w~~ 421 (914)
...++.|.....|.+++++.++|++++|+|++|++.||+ +|++....|+|++++++++++||.|++
T Consensus 310 -------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~ 376 (395)
T 3h6g_A 310 -------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDP 376 (395)
T ss_dssp -------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEET
T ss_pred -------------CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCEECCCEEEEEEECCCCCEEEEEECC
T ss_conf -------------8767778999867661999999961877675232486489880667758999841577447789838
Q ss_pred CCCCCCCCC
Q ss_conf 999621488
Q 002505 422 HSGLSVVPP 430 (914)
Q Consensus 422 ~~~l~~~~~ 430 (914)
..|+.+..+
T Consensus 377 ~~g~~~~~~ 385 (395)
T 3h6g_A 377 ASGLNMTES 385 (395)
T ss_dssp TTEECCCC-
T ss_pred CCCCCCCCC
T ss_conf 888111588
No 8
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=1.00 E-value=1 Score=395.81 Aligned_cols=387 Identities=17% Similarity=0.188 Sum_probs=319.0
Q ss_pred CEEEEEEEECCCC---CCCHHHHH-HHHHHHHHHHCCCCCCCCCEEEEEEECC-----CCCHHHHHHHHHHHHHC-CCEE
Q ss_conf 7299999951798---64125999-9999999884299999995999999307-----99969899999998723-9279
Q 002505 31 PVLNIGAVFALNS---TIGKVAKV-AIEAAVEDVNSNPAILGGTKLKLTVHDT-----NYSRFLGMVEALTLLEN-ETVA 100 (914)
Q Consensus 31 ~~i~IG~i~p~s~---~~g~~~~~-a~~~Aie~iN~~~~il~g~~i~l~~~D~-----~~~~~~a~~~a~~li~~-~v~a 100 (914)
++|+||+++|++. ..|..... |+++|+|+||++++++||++|+++++|+ +|++..++..+.+++.+ +|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 93389998467688783468877999999999997478878982599999337675456435567999999997339639
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEE------EE
Q ss_conf 994898067999998311287418940159999765-78894286048808889999999978297199999------97
Q 002505 101 IIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIAL------YV 173 (914)
Q Consensus 101 iiG~~~s~~~~~va~~~~~~~ip~is~~a~~~~l~~-~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii------~~ 173 (914)
||||.+|..+.+++++++.+++|+|+++++++.+++ ..+|++||+.|++..++.++++++++++|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 99999707788999999765985784555654467631067079953848889999999998789818999998268777
Q ss_pred ECCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 088763239999999762-2608989640699999358999999850398729999818067999999978669777880
Q 002505 174 DDDHGRNGIAALGDKLAE-KRCRLSHKVPLSPKGSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGY 252 (914)
Q Consensus 174 d~~~g~~~~~~~~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~ 252 (914)
|+++| ...+.+.+.+.+ .|+||+..+.++ .+..|+..++.++++ ++|+|++++...++..++++++++|+.++++
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred CCHHH-HHHHHHHHHHHHHCCEEEEEEEEEC--CCHHHHHHHHHHHHH-HCCEEEEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 52488-9999999998764175999999724--855639999999986-2764999528589999999999759998987
Q ss_pred EEEEECCCCCCCC---------CC---CCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 9999474311236---------78---8587236651024068987228937789999999874026---8999998987
Q 002505 253 VWIVTDWLSSILD---------TD---SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRR---NTLNGPIGLN 317 (914)
Q Consensus 253 ~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~ 317 (914)
+|++++.+..... .. ....+...+.++|++++.+..++++.+++|.++|++.++. |... ...++
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~ 315 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVE-DGLKN 315 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCC-CSGGG
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC-CCHHH
T ss_conf 99999525642223544445687615885459999985305999357899836899999999973589886553-11164
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCC
Q ss_conf 25899977999999999986614998411478533236789865565333475279999988245478532139826997
Q 002505 318 SFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSELSRGDMRFSSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRD 397 (914)
Q Consensus 318 ~~~~~~yDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~ 397 (914)
.++.++||||+++++|++++...++. +.+++++.++|++++|+|++|++.||++|+
T Consensus 316 ~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~ 371 (435)
T 1dp4_A 316 IIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGD 371 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC------------------------CCCHHHHHHHHHCCEEECCCEEEEECCCCC
T ss_conf 89999999999999999999970899------------------------777999999985765653403589878897
Q ss_pred CCCCCEEEEEE--CCCCEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEE
Q ss_conf 77874499991--1466389988428999-6214886544799988876455320240898544698400
Q 002505 398 LINPAYEVINV--IGTGSRRIGYWSNHSG-LSVVPPEALYKEPSNRSASSQHLYSAVWPGQTTQKPRGWV 464 (914)
Q Consensus 398 ~~~~~~~i~~~--~~~~~~~Vg~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~~~~p~~~~ 464 (914)
+. ..|.|+++ .++.+++||.|++..+ +.+ .+...|.||++.++...|.|
T Consensus 372 ~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 372 RD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp BC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred CC-CEEEEEEECCCCCCEEEEEEECCCCCEEEE-----------------CCCCEEECCCCCCCCCCCCC
T ss_conf 40-116999853889857999995377766997-----------------28824368898798999998
No 9
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=1.00 E-value=1 Score=395.35 Aligned_cols=367 Identities=17% Similarity=0.250 Sum_probs=310.3
Q ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC-CHHHHHHHHHHHHHCCCEEEECCCCCHH
Q ss_conf 729999995179864125999999999988429999999599999930799-9698999999987239279994898067
Q 002505 31 PVLNIGAVFALNSTIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNY-SRFLGMVEALTLLENETVAIIGPQFSVI 109 (914)
Q Consensus 31 ~~i~IG~i~p~s~~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiG~~~s~~ 109 (914)
.+|+||+++|+++ .....|+++|+++||++ |++|++++.|+++ ++..+..++++|++++|.+||||.+|..
T Consensus 1 ~~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~ 72 (376)
T 3hsy_A 1 NSIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (376)
T ss_dssp CEEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CCEEEEEEECCCC---HHHHHHHHHHHHHHHCC-----CEEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCHHH
T ss_conf 9405988857998---78999999999997458-----739998886448778689999999977428599998886668
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99999831128741894015999976578894286048808889999999978297199999970887632399999997
Q 002505 110 AHLVSHIANEFQVPLLSFAATDPSLSSLQYPFFVRTTQSDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKL 189 (914)
Q Consensus 110 ~~~va~~~~~~~ip~is~~a~~~~l~~~~~~~~~r~~p~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~~~l 189 (914)
+.+++++++.+++|+|+++++. ....+|+||+.|+ ++.++++++++++|++|++|+ |++||....+.+++.+
T Consensus 73 ~~av~~~~~~~~ip~is~~~~~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~ 144 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFPT----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCCC----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCEEECCCCC----CCCCCCEEEECCC---HHHHHHHHHHHCCCCEEEEEE-ECCHHHHHHHHHHHHH
T ss_conf 9999998435768536227887----6667716996865---789999999966987799998-0842589999999976
Q ss_pred HHCCCEEEEEECCCCC--CCHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 6226089896406999--99358999999850398729999818067999999978669777880999947431123678
Q 002505 190 AEKRCRLSHKVPLSPK--GSRNQIIDTLLTVSSMMSRILILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTD 267 (914)
Q Consensus 190 ~~~g~~v~~~~~~~~~--~~~~d~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 267 (914)
++.|++|+....++.. .+..|+..++.+|+++++++|++++...++..++++++++|+++++|+||++++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 223 (376)
T 3hsy_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (376)
T ss_dssp HHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-
T ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCH-
T ss_conf 4169848999713566664424699999998627986999988889999999999972667888089980798463346-
Q ss_pred CCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 85872366510240689872289377899999998740268-99999898725899977999999999986614998411
Q 002505 268 SQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTRWRHLTRRN-TLNGPIGLNSFGLYAYDTLWLLAHAIGAFFDQGGNISF 346 (914)
Q Consensus 268 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~~ 346 (914)
.+......+++++.++.++++..++|.++|+++++.. ++.+...++.+++++|||++++++|++++..++.....
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 224 ----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp ----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred ----HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----7760677584499976488557999999997424211478777650225899999999999999999854776234
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 4785332367898655--65333475279999988245478532139826997778744999911466389988428999
Q 002505 347 SEDSKLSELSRGDMRF--SSVSIFNGGKMLLDNILQVNMTGVTGPIKFTSDRDLINPAYEVINVIGTGSRRIGYWSNHSG 424 (914)
Q Consensus 347 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~l~~~~f~g~~G~v~f~~~G~~~~~~~~i~~~~~~~~~~Vg~w~~~~~ 424 (914)
.+.+..| +...+|.+|.++.++|++++|+|++|++.||++|++.+..|+|++++++++++||+|++..|
T Consensus 300 ---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 370 (376)
T 3hsy_A 300 ---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (376)
T ss_dssp ---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred ---------CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf ---------78787157999987577289999998367678765546789998734348999953898627789838877
Q ss_pred CCC
Q ss_conf 621
Q 002505 425 LSV 427 (914)
Q Consensus 425 l~~ 427 (914)
|+.
T Consensus 371 ~~~ 373 (376)
T 3hsy_A 371 MVV 373 (376)
T ss_dssp EEE
T ss_pred CEE
T ss_conf 100
No 10
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=1.00 E-value=1 Score=395.11 Aligned_cols=388 Identities=22% Similarity=0.359 Sum_probs=320.7
Q ss_pred CCCCCEEEEEEEECCC------------C-CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 7899729999995179------------8-64125999999999988429999999599999930799969899999998
Q 002505 27 STIPPVLNIGAVFALN------------S-TIGKVAKVAIEAAVEDVNSNPAILGGTKLKLTVHDTNYSRFLGMVEALTL 93 (914)
Q Consensus 27 ~~~~~~i~IG~i~p~s------------~-~~g~~~~~a~~~Aie~iN~~~~il~g~~i~l~~~D~~~~~~~a~~~a~~l 93 (914)
...+++|.||++||++ . ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++++.+|
T Consensus 8 ~~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~l 87 (479)
T 3sm9_A 8 IKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEF 87 (479)
T ss_dssp EEECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 60379999999998177789999876646112079999999999998479865789758699996689759999999999
Q ss_pred HHC-------------------------CCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCC-CCCCCEEECCC
Q ss_conf 723-------------------------9279994898067999998311287418940159999765-78894286048
Q 002505 94 LEN-------------------------ETVAIIGPQFSVIAHLVSHIANEFQVPLLSFAATDPSLSS-LQYPFFVRTTQ 147 (914)
Q Consensus 94 i~~-------------------------~v~aiiG~~~s~~~~~va~~~~~~~ip~is~~a~~~~l~~-~~~~~~~r~~p 147 (914)
+++ +|.+||||.+|..+.+++++++.+++|+|+++++++.+++ .++|++||+.|
T Consensus 88 l~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p 167 (479)
T 3sm9_A 88 VRASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP 167 (479)
T ss_dssp HHTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEECC
T ss_conf 84877567887774677776544467786399998887479999999986389428878768844357665887477578
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH-HHHCCCCCEEE
Q ss_conf 80888999999997829719999997088763239999999762260898964069999935899999-98503987299
Q 002505 148 SDLYQMAAIADIVDYFGWRNVIALYVDDDHGRNGIAALGDKLAEKRCRLSHKVPLSPKGSRNQIIDTL-LTVSSMMSRIL 226 (914)
Q Consensus 148 ~~~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l-~~i~~~~~~vi 226 (914)
++..++.+++++++++||++|++|++|++||....+.+++++++.|+||++.+.++......|+..++ +.+++++++||
T Consensus 168 sd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vI 247 (479)
T 3sm9_A 168 PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVV 247 (479)
T ss_dssp CTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEE
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 67889999999999789819999996332058899999999997795299999737888768899999999744897499
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHH------
Q ss_conf 99818067999999978669777880999947431123678858723665102406898722893778999999------
Q 002505 227 ILHTYDIWGLEVLNAAKHLRMMESGYVWIVTDWLSSILDTDSQLHSEKMDDIQGVLTLRMYTQSSEEKRKFVTR------ 300 (914)
Q Consensus 227 il~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~------ 300 (914)
|+++...++..+++++.++|+. ++||++++|........ .....+.|++++.++..+.+++++|...
T Consensus 248 i~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 248 VLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEECCHHHHHHHHHHHHHHCCE---EEEEEECHHHCCCCCCC----CCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCC
T ss_conf 9986758999999999984977---99999560206763213----6565476389997146777565667512685768
Q ss_pred ---------HHHHHC-----------CCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf ---------987402-----------68999998-----98725899977999999999986614998411478533236
Q 002505 301 ---------WRHLTR-----------RNTLNGPI-----GLNSFGLYAYDTLWLLAHAIGAFFDQGGNISFSEDSKLSEL 355 (914)
Q Consensus 301 ---------~~~~~~-----------~~~~~~~~-----~~~~~~~~~yDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 355 (914)
|+..|+ .|++.+.. ........+||||+++|+|+++++.+.+..
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~----------- 389 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN----------- 389 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT-----------
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-----------
T ss_conf 898799999999769888988654667887401255754354401068989999999999998705679-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHH-HHHHHCCCCCC------CC-CEEECCCCCCCCCCEEEEEECC--C--CEEEEEEECCCC
Q ss_conf 78986556533347527999-99882454785------32-1398269977787449999114--6--638998842899
Q 002505 356 SRGDMRFSSVSIFNGGKMLL-DNILQVNMTGV------TG-PIKFTSDRDLINPAYEVINVIG--T--GSRRIGYWSNHS 423 (914)
Q Consensus 356 ~~~~~~~~~~~~~~~g~~l~-~~l~~~~f~g~------~G-~v~f~~~G~~~~~~~~i~~~~~--~--~~~~Vg~w~~~~ 423 (914)
....|.....+. +++|. ++|++++|.+. .| .+.||++|+. ...|+|+|++. + .+++||.|+ .
T Consensus 390 --~~~~c~~~~~~~-~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~--~ 463 (479)
T 3sm9_A 390 --TTKLCDAMKILD-GKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA--E 463 (479)
T ss_dssp --CSSCCHHHHSCC-HHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES--S
T ss_pred --CCCCCCCCCCCC-HHHHHHHHHCCEEECCCCCCCCCCCCEEEECCCCCC-CCCEEEEEEEECCCCEEEEEEEEEE--C
T ss_conf --886777777757-677799985024403666764568986898789986-6406799989779958999999990--4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 962148865447999888764553202408985
Q 002505 424 GLSVVPPEALYKEPSNRSASSQHLYSAVWPGQT 456 (914)
Q Consensus 424 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~g~~ 456 (914)
+|.+ +...|.|+++.
T Consensus 464 ~l~i------------------~~~~I~W~~~~ 478 (479)
T 3sm9_A 464 TLSL------------------DVNSIHWSRNS 478 (479)
T ss_dssp SEEE------------------CGGGCCCC---
T ss_pred EEEE------------------ECCEEEECCCC
T ss_conf 4888------------------54424768888
Done!