Query 002506
Match_columns 914
No_of_seqs 537 out of 3812
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 01:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.5E-37 5.4E-42 364.4 30.7 321 2-331 189-519 (525)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 3.8E-31 8.3E-36 311.9 20.5 231 1-248 217-448 (559)
3 KOG1966 Sodium/hydrogen exchan 100.0 1.3E-29 2.7E-34 285.2 8.6 233 1-250 249-482 (670)
4 KOG1965 Sodium/hydrogen exchan 100.0 4.1E-28 8.9E-33 275.3 15.9 209 1-224 245-462 (575)
5 COG0025 NhaP NhaP-type Na+/H+ 99.9 5.2E-25 1.1E-29 253.2 20.2 210 2-226 201-416 (429)
6 KOG0498 K+-channel ERG and rel 99.8 4.1E-19 8.8E-24 210.5 18.8 209 409-628 338-550 (727)
7 COG3263 NhaP-type Na+/H+ and K 99.8 7E-19 1.5E-23 191.8 14.8 194 2-221 197-394 (574)
8 TIGR00844 c_cpa1 na(+)/h(+) an 99.8 9.9E-19 2.1E-23 208.0 16.4 207 2-219 219-443 (810)
9 PRK05326 potassium/proton anti 99.8 1.1E-18 2.3E-23 208.9 15.9 179 19-223 220-398 (562)
10 PRK09392 ftrB transcriptional 99.7 5E-17 1.1E-21 173.4 16.4 213 497-739 6-218 (236)
11 KOG0614 cGMP-dependent protein 99.7 1.4E-17 3E-22 184.5 11.9 222 496-739 152-381 (732)
12 PLN03192 Voltage-dependent pot 99.7 2.9E-16 6.4E-21 196.0 24.5 191 427-628 312-503 (823)
13 KOG0500 Cyclic nucleotide-gate 99.7 1.9E-15 4E-20 167.5 18.9 183 426-621 243-433 (536)
14 KOG0499 Cyclic nucleotide-gate 99.7 8.8E-16 1.9E-20 171.8 14.3 202 405-617 442-647 (815)
15 KOG1113 cAMP-dependent protein 99.6 4E-16 8.6E-21 167.2 10.8 173 497-681 121-296 (368)
16 PRK11753 DNA-binding transcrip 99.6 2.4E-15 5.2E-20 157.4 14.4 196 507-715 6-202 (211)
17 COG2905 Predicted signal-trans 99.6 1.4E-14 3E-19 163.6 15.2 236 495-737 4-254 (610)
18 PRK10402 DNA-binding transcrip 99.6 8.4E-15 1.8E-19 155.5 11.3 190 516-739 26-215 (226)
19 PRK11161 fumarate/nitrate redu 99.6 1.2E-14 2.6E-19 155.0 11.4 215 500-740 15-231 (235)
20 cd00038 CAP_ED effector domain 99.5 6.4E-14 1.4E-18 129.7 13.2 114 505-618 1-114 (115)
21 TIGR03697 NtcA_cyano global ni 99.5 2.5E-14 5.4E-19 147.5 9.3 186 529-740 1-190 (193)
22 COG0664 Crp cAMP-binding prote 99.5 6.4E-13 1.4E-17 138.0 16.6 202 501-715 3-205 (214)
23 PF00027 cNMP_binding: Cyclic 99.5 4.5E-13 9.7E-18 119.9 11.4 91 523-613 1-91 (91)
24 PRK09391 fixK transcriptional 99.4 6.7E-13 1.5E-17 141.4 13.1 192 517-739 34-226 (230)
25 PRK13918 CRP/FNR family transc 99.4 4.9E-13 1.1E-17 139.0 11.5 187 520-739 5-195 (202)
26 smart00100 cNMP Cyclic nucleot 99.4 3.5E-12 7.6E-17 118.6 13.7 115 505-619 1-117 (120)
27 KOG0614 cGMP-dependent protein 99.3 1.4E-12 3E-17 145.3 8.0 127 496-622 270-398 (732)
28 PLN02868 acyl-CoA thioesterase 99.3 1.4E-11 3.1E-16 142.3 12.4 115 495-612 5-119 (413)
29 PF00999 Na_H_Exchanger: Sodiu 99.2 1.8E-12 4E-17 148.2 2.1 171 18-214 209-380 (380)
30 KOG4505 Na+/H+ antiporter [Ino 98.9 6.3E-09 1.4E-13 111.1 10.5 202 2-214 219-433 (467)
31 KOG1113 cAMP-dependent protein 98.9 2.5E-09 5.4E-14 115.6 6.8 114 496-613 238-351 (368)
32 KOG0501 K+-channel KCNQ [Inorg 98.8 3E-08 6.6E-13 111.7 13.1 192 409-622 474-669 (971)
33 KOG2968 Predicted esterase of 98.5 2.3E-07 4.9E-12 109.7 7.3 109 519-627 506-614 (1158)
34 PRK03659 glutathione-regulated 97.9 0.00025 5.4E-09 86.2 16.9 128 21-170 215-343 (601)
35 PRK03562 glutathione-regulated 97.7 0.0011 2.3E-08 81.0 17.5 128 20-169 217-345 (621)
36 KOG2968 Predicted esterase of 97.3 0.0009 2E-08 80.3 10.6 133 493-628 90-229 (1158)
37 PRK11832 putative DNA-binding 97.2 0.0042 9.2E-08 64.5 12.4 105 515-628 16-121 (207)
38 PLN03159 cation/H(+) antiporte 97.2 0.011 2.4E-07 74.5 18.1 130 22-170 272-402 (832)
39 PRK10669 putative cation:proto 96.9 0.02 4.4E-07 69.3 16.8 121 27-169 231-353 (558)
40 PF04831 Popeye: Popeye protei 96.8 0.046 1E-06 53.6 14.6 116 508-628 14-136 (153)
41 COG0475 KefB Kef-type K+ trans 96.3 0.17 3.7E-06 58.5 18.0 129 18-168 218-347 (397)
42 KOG3542 cAMP-regulated guanine 96.2 0.006 1.3E-07 70.9 5.5 109 497-610 280-390 (1283)
43 TIGR00932 2a37 transporter, mo 95.6 0.048 1E-06 59.7 9.3 70 19-96 203-272 (273)
44 KOG3542 cAMP-regulated guanine 88.9 0.47 1E-05 55.9 4.6 90 497-599 36-125 (1283)
45 TIGR00844 c_cpa1 na(+)/h(+) an 85.0 9 0.0002 47.8 12.8 75 24-99 19-93 (810)
46 PRK14853 nhaA pH-dependent sod 73.2 1E+02 0.0023 36.0 15.9 132 28-172 212-358 (423)
47 PF03601 Cons_hypoth698: Conse 69.4 82 0.0018 35.3 13.6 36 24-59 3-41 (305)
48 TIGR00773 NhaA Na+/H+ antiport 68.7 79 0.0017 36.3 13.3 119 40-171 213-338 (373)
49 PRK03659 glutathione-regulated 54.4 1.9E+02 0.0042 35.5 14.4 73 19-98 5-77 (601)
50 TIGR00698 conserved hypothetic 54.2 3.1E+02 0.0068 31.1 14.8 38 23-60 6-47 (335)
51 PF06570 DUF1129: Protein of u 53.7 1.1E+02 0.0024 32.0 10.5 34 24-58 91-124 (206)
52 PRK03562 glutathione-regulated 52.5 1.9E+02 0.0041 35.7 13.9 72 20-98 6-77 (621)
53 PLN03159 cation/H(+) antiporte 50.6 2.3E+02 0.0049 36.4 14.4 81 20-101 44-128 (832)
54 COG4651 RosB Kef-type K+ trans 45.4 2.4E+02 0.0052 31.5 11.4 64 27-98 231-295 (408)
55 PRK04972 putative transporter; 43.6 2E+02 0.0044 35.0 12.0 26 192-218 165-190 (558)
56 TIGR00831 a_cpa1 Na+/H+ antipo 42.0 1.5E+02 0.0033 35.8 10.6 75 404-480 445-519 (525)
57 PF07883 Cupin_2: Cupin domain 41.0 79 0.0017 26.2 5.9 67 524-599 3-70 (71)
58 PRK10263 DNA translocase FtsK; 39.7 2.3E+02 0.0049 37.8 11.9 10 155-164 141-150 (1355)
59 KOG2290 Rhomboid family protei 39.4 1E+02 0.0022 35.8 7.8 27 69-95 535-561 (652)
60 PF09446 VMA21: VMA21-like dom 39.0 57 0.0012 27.8 4.6 39 22-60 10-61 (66)
61 smart00835 Cupin_1 Cupin. This 38.9 86 0.0019 30.7 6.6 52 522-573 33-85 (146)
62 PRK10669 putative cation:proto 37.0 3.5E+02 0.0076 32.8 12.8 70 23-99 10-79 (558)
63 PF02268 TFIIA_gamma_N: Transc 36.6 1.1E+02 0.0025 24.5 5.5 35 300-334 12-46 (49)
64 TIGR00946 2a69 he Auxin Efflux 35.5 5E+02 0.011 28.9 12.9 137 48-216 185-321 (321)
65 COG3718 IolB Uncharacterized e 35.0 1.1E+02 0.0025 32.5 6.8 64 521-598 31-107 (270)
66 COG3965 Predicted Co/Zn/Cd cat 33.6 5E+02 0.011 28.4 11.3 129 82-222 25-155 (314)
67 TIGR00359 cello_pts_IIC phosph 33.5 6.2E+02 0.013 29.7 13.6 13 152-164 234-246 (423)
68 TIGR00410 lacE PTS system, lac 33.5 6.2E+02 0.013 29.7 13.6 13 152-164 234-246 (423)
69 PF10925 DUF2680: Protein of u 33.5 2.3E+02 0.0049 23.7 7.1 46 291-336 8-53 (59)
70 PF10011 DUF2254: Predicted me 33.3 3.5E+02 0.0077 31.1 11.4 36 62-97 77-115 (371)
71 cd00038 CAP_ED effector domain 31.9 69 0.0015 28.4 4.4 45 636-681 3-50 (115)
72 PF04123 DUF373: Domain of unk 31.6 4.8E+02 0.01 29.8 11.7 22 76-97 263-284 (344)
73 PRK12438 hypothetical protein; 31.6 1.3E+03 0.028 30.2 17.9 36 189-224 285-320 (991)
74 TIGR00680 kdpA K+-transporting 31.2 4E+02 0.0087 32.1 11.2 34 26-59 361-404 (563)
75 COG4129 Predicted membrane pro 30.9 1.7E+02 0.0037 33.2 8.0 87 1-89 62-148 (332)
76 COG3671 Predicted membrane pro 30.8 3.6E+02 0.0079 25.8 8.7 61 28-94 24-88 (125)
77 PF12476 DUF3696: Protein of u 30.7 22 0.00048 28.6 0.8 15 765-779 28-42 (52)
78 PRK13666 hypothetical protein; 30.5 2.4E+02 0.0051 25.6 7.0 50 430-485 37-86 (92)
79 COG1230 CzcD Co/Zn/Cd efflux s 28.8 3.7E+02 0.0081 29.9 10.0 57 41-97 121-180 (296)
80 PF03904 DUF334: Domain of unk 28.0 1.8E+02 0.0039 30.9 6.9 64 25-96 154-218 (230)
81 COG2147 RPL19A Ribosomal prote 27.9 1.5E+02 0.0032 29.4 5.8 39 290-328 89-127 (150)
82 PRK05326 potassium/proton anti 27.7 4.6E+02 0.01 31.9 11.7 73 21-98 8-80 (562)
83 TIGR03037 anthran_nbaC 3-hydro 27.1 1.9E+02 0.0042 29.1 6.8 64 531-602 41-104 (159)
84 PF04172 LrgB: LrgB-like famil 26.9 7.9E+02 0.017 26.1 13.7 48 162-220 116-163 (215)
85 smart00100 cNMP Cyclic nucleot 26.6 94 0.002 27.6 4.3 45 636-681 3-50 (120)
86 PF04632 FUSC: Fusaric acid re 26.3 3.3E+02 0.0071 33.6 10.3 92 1-97 54-150 (650)
87 COG2118 DNA-binding protein [G 26.2 1.8E+02 0.0038 27.6 5.8 49 420-481 53-105 (116)
88 PF05899 Cupin_3: Protein of u 26.2 71 0.0015 27.6 3.2 40 527-573 15-54 (74)
89 KOG2378 cAMP-regulated guanine 24.5 57 0.0012 37.8 2.8 43 569-611 1-44 (573)
90 PRK13290 ectC L-ectoine syntha 24.4 3.2E+02 0.007 26.3 7.6 68 522-599 38-106 (125)
91 PF09851 SHOCT: Short C-termin 24.3 1.3E+02 0.0028 21.6 3.6 26 452-477 4-29 (31)
92 KOG1650 Predicted K+/H+-antipo 24.2 5.9E+02 0.013 32.4 11.9 122 23-164 259-381 (769)
93 PF10225 DUF2215: Uncharacteri 24.0 9.4E+02 0.02 26.0 15.4 16 142-157 118-133 (249)
94 TIGR00394 lac_pts_IIC phosphot 23.0 1.1E+03 0.024 27.6 13.1 20 40-59 121-140 (412)
95 PRK09592 celD cellobiose phosp 22.6 1.3E+03 0.028 27.2 14.6 10 153-162 265-274 (449)
96 PRK09392 ftrB transcriptional 22.2 1.2E+02 0.0027 31.9 4.8 47 633-680 13-62 (236)
97 PRK03818 putative transporter; 21.8 4.2E+02 0.0092 32.3 9.7 46 48-101 404-455 (552)
98 KOG4567 GTPase-activating prot 21.7 4.3E+02 0.0094 29.6 8.6 90 299-393 228-328 (370)
99 PF14402 7TM_transglut: 7 tran 21.4 1.2E+03 0.025 26.2 11.9 136 5-164 128-263 (313)
100 PRK10297 PTS system N,N'-diace 21.3 1.1E+03 0.024 27.9 12.8 13 152-164 242-254 (452)
101 PLN02868 acyl-CoA thioesterase 20.7 1.4E+02 0.003 34.8 5.2 48 633-681 14-64 (413)
102 COG4858 Uncharacterized membra 20.3 3.9E+02 0.0085 27.6 7.4 33 23-57 105-137 (226)
No 1
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2.5e-37 Score=364.37 Aligned_cols=321 Identities=20% Similarity=0.270 Sum_probs=240.9
Q ss_pred ChhhHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccc-cCChhhHHHHHHHHHHH
Q 002506 2 GLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMV 80 (914)
Q Consensus 2 Gi~~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~-~~s~~~~~~~~~fw~~l 80 (914)
|+++|++...++++..+|+..+++++++++|++|++| |.+|+||++|+|+||++++++++. +++++.+...++||+.+
T Consensus 189 G~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l 267 (525)
T TIGR00831 189 GLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVI 267 (525)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHH
Confidence 5555555554555667888999999999999999999 679999999999999999998876 78999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccc--ccccchH---HHHHHHHHHHHHHHHHHHHHH--HHHHhhhCCCCChhhhHH
Q 002506 81 AYIANTLIFILSGVVIAEGILGNDKIF--QNHGNSW---GYLILLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAII 153 (914)
Q Consensus 81 ~~~an~lIFillGl~i~~~v~~~~~~~--~~~~~~~---~~~l~~~~~i~v~R~~~v~~~--~p~l~~~~~~~~~~~~~v 153 (914)
++++|+++|+++|+.++..+.+..... ......| ..+++++..+.++|+++++.. .+..++.+.+++|+++++
T Consensus 268 ~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v 347 (525)
T TIGR00831 268 VFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHV 347 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHH
Confidence 999999999999999986332210000 0000111 124455666777888776532 122233345678999999
Q ss_pred HhhhcchhHHHHHHHhhhhcccC-CCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHHHHHHHHHH
Q 002506 154 LVWSGLRGAVALSLSLSVKRSSG-GSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTK 232 (914)
Q Consensus 154 l~w~GlRGavsLaLal~v~~~~~-~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~~~~~~~~~ 232 (914)
++|+|+||+|++|+|+++|.... +.+++ .|+.+++++++||++|+++||+|+|+++|++++++.++. +.....++
T Consensus 348 ~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~ 423 (525)
T TIGR00831 348 VSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIAR 423 (525)
T ss_pred heeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHH
Confidence 99999999999999999997643 44554 479999999999999999999999999999999887654 44566788
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCHHH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002506 233 YEMLNTAFKTFGDLGDDEELGPVDWPT-VKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAML 311 (914)
Q Consensus 233 ~~~~~~a~~~l~~l~~d~~l~~a~w~~-v~~y~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~r~l~~~r~~~~~l~ 311 (914)
..+.+++++.++++.++....++..+. .++|..++++.+.+... .. + +...+.+...++|++++++||+.+.+++
T Consensus 424 ~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~ 499 (525)
T TIGR00831 424 YIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADGEE-KI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLR 499 (525)
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhccc-ch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887665544433333 36677766654332111 00 0 0001112245789999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHH
Q 002506 312 DEGRITQTAANILMQSVDEG 331 (914)
Q Consensus 312 ~~g~is~~~~~~L~~~id~~ 331 (914)
++|+||+++++.+++.+|..
T Consensus 500 ~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 500 AGGLISQEVLLELMRELDLK 519 (525)
T ss_pred HcCCCCHHHHHHHHHHhhHH
Confidence 99999999999999988753
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.97 E-value=3.8e-31 Score=311.87 Aligned_cols=231 Identities=26% Similarity=0.458 Sum_probs=197.5
Q ss_pred CChhhHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHH
Q 002506 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMV 80 (914)
Q Consensus 1 iGi~~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l 80 (914)
+|+++|+++++++++..+++..+..++++++|++|++| |.+|+||++||++||+++++|.+.+++++++...++||+++
T Consensus 217 iG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lA-E~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~l 295 (559)
T TIGR00840 217 VGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKML 295 (559)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHH
Confidence 46777777777777776777899999999999999999 68999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCChhhhHHHhhhcc
Q 002506 81 AYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNF-GYGLEWKEAIILVWSGL 159 (914)
Q Consensus 81 ~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~-~~~~~~~~~~vl~w~Gl 159 (914)
++++|++||+++|+.+... .+.++|.++++++++++++|+++|++++++++++ +.+++|+++++++|+|+
T Consensus 296 s~l~e~~IFvlLGl~l~~~---------~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~Gl 366 (559)
T TIGR00840 296 SSLSETLIFIFLGVSLVTE---------NHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGL 366 (559)
T ss_pred HHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeeecc
Confidence 9999999999999987531 1235677777888889999999999988888766 35789999999999999
Q ss_pred hhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHHHHHHHHHHHHHHHHH
Q 002506 160 RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTA 239 (914)
Q Consensus 160 RGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~~~~~~~~~~~~~~~a 239 (914)
||+|++|||+.+|... ++ .+++++++|++||++|+++||+|++|++++|++.+.+..++...+....+..++.
T Consensus 367 RGaVa~aLAl~l~~~~----~~---~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~~~~~e~~~~~~~~~~ 439 (559)
T TIGR00840 367 RGAVAFALALLLDEKI----FP---YKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKINEELHDREFDHL 439 (559)
T ss_pred ccHHHHHHHHhCCCCC----cc---hHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccchhhHHHHHHHHHHHHH
Confidence 9999999999887541 22 4788999999999999999999999999999999888776666666666667777
Q ss_pred HHHHhccCC
Q 002506 240 FKTFGDLGD 248 (914)
Q Consensus 240 ~~~l~~l~~ 248 (914)
+..+++...
T Consensus 440 ~~~ie~~~g 448 (559)
T TIGR00840 440 LPGIEDICG 448 (559)
T ss_pred HhHHHHHhh
Confidence 777766653
No 3
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.3e-29 Score=285.21 Aligned_cols=233 Identities=23% Similarity=0.438 Sum_probs=207.0
Q ss_pred CChhhHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHH
Q 002506 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMV 80 (914)
Q Consensus 1 iGi~~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l 80 (914)
+|+++|+++++..++..+-.++|.++.+++||++|+.| |.+|.|||||+++||+.|..|.+.+++.++......|-+++
T Consensus 249 vGivfafl~sl~tkft~~vrviePvfif~~pYlaYL~a-Em~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~l 327 (670)
T KOG1966|consen 249 VGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAYLTA-EMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKML 327 (670)
T ss_pred HHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 46777777777777777778999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCChhhhHHHhhhcc
Q 002506 81 AYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-GLEWKEAIILVWSGL 159 (914)
Q Consensus 81 ~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~-~~~~~~~~vl~w~Gl 159 (914)
+..+|++||+++|+..... ++.++|.++++.++++++.|++.|.+++.++|+++. +++..++++|++||+
T Consensus 328 ss~sEt~IF~fLGvs~v~~---------~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyGGL 398 (670)
T KOG1966|consen 328 SSLSETVIFMFLGVSTVSS---------NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYGGL 398 (670)
T ss_pred HhccchhhheeehhhhcCC---------cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecCCc
Confidence 9999999999999987631 367899999999999999999999999999998874 789999999999999
Q ss_pred hhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHHHHHHHHHHHHHHHHH
Q 002506 160 RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTA 239 (914)
Q Consensus 160 RGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~~~~~~~~~~~~~~~a 239 (914)
||||+++|+..+|... ++ ..++++..|..||++|.++||+|++|+++||++.+.+..++.+.+....++++..
T Consensus 399 RGAiaF~LV~lid~~~-----vp--~K~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~m~e~i~~~~~dhl 471 (670)
T KOG1966|consen 399 RGAIAFGLVVLIDGAK-----VP--AKNMFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRDPTMNEEIYNRLLDHL 471 (670)
T ss_pred chhhheeEEEEecccc-----CC--cccceEeeeeEEEeeeeeecccchHHHHHHHccccccccCchhhHHHHHHHHHHH
Confidence 9999999999998552 22 3588888999999999999999999999999999888777776666667788888
Q ss_pred HHHHhccCCCC
Q 002506 240 FKTFGDLGDDE 250 (914)
Q Consensus 240 ~~~l~~l~~d~ 250 (914)
+..++++..++
T Consensus 472 m~gIEDi~G~~ 482 (670)
T KOG1966|consen 472 MAGIEDIAGQK 482 (670)
T ss_pred HHHHHHHhccc
Confidence 88888886543
No 4
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.1e-28 Score=275.34 Aligned_cols=209 Identities=30% Similarity=0.455 Sum_probs=179.7
Q ss_pred CChhhHHHHHHHHHhHhc--chhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHH
Q 002506 1 MGLAFGIASVLWLGFIFN--DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWE 78 (914)
Q Consensus 1 iGi~~G~~~~~~l~~~~~--d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~ 78 (914)
+|+++|+++++|+++++. ++..|.+++++++|.+|++| |++|+|||+||.+||++|++|++.+++++++..+++||.
T Consensus 245 lGv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY~sY~lA-E~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~ 323 (575)
T KOG1965|consen 245 LGVAIGLISALVLKFLYLRRTPSLESALMLLMSYLSYLLA-EGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFR 323 (575)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 588999999999998864 99999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-C----CChhhhH
Q 002506 79 MVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNS-WGYLILLYIFVQVSRLFVVGTLYPVLRNFGY-G----LEWKEAI 152 (914)
Q Consensus 79 ~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~-~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~-~----~~~~~~~ 152 (914)
+++|+||++||+++|+.+.. +.++... ..+++++.+.++++|++.|+++.-+++..+. + ++.+++.
T Consensus 324 ~lsflAEtfIF~Y~Gl~~f~--------~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~ 395 (575)
T KOG1965|consen 324 TLSFLAETFIFIYLGLSAFD--------FQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQV 395 (575)
T ss_pred HHHHHHHHHHHHHHhHHHhc--------ccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhh
Confidence 99999999999999986642 1112222 4567888899999999999999888876643 3 7899999
Q ss_pred HHhhhc-chhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHH
Q 002506 153 ILVWSG-LRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 224 (914)
Q Consensus 153 vl~w~G-lRGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~ 224 (914)
+++|+| +|||+++|||+....+.+ . ..++.++..|..||++|+++.|.++.|++++|........+
T Consensus 396 ~~~w~g~lRGAvs~ALa~~~~~~~~---~---~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 396 IMWWAGGLRGAVSFALALGDFTDSP---H---TGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred HhHhhhhhhHHHHHHHHhhhccccc---c---ccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 999999 999999999985543321 1 13577888889999999999999999999999987765443
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.2e-25 Score=253.23 Aligned_cols=210 Identities=26% Similarity=0.418 Sum_probs=172.8
Q ss_pred ChhhHHHHHHHHHhHhc----chhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCCh-hhHHHHHHH
Q 002506 2 GLAFGIASVLWLGFIFN----DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKG-ESQQSLHYF 76 (914)
Q Consensus 2 Gi~~G~~~~~~l~~~~~----d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~-~~~~~~~~f 76 (914)
|+++|++..+.+++... ++..+..++++.+|.+|.+| |.+|+||++|+|++|++++++.+.+.++ ..+...++|
T Consensus 201 G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a-~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~f 279 (429)
T COG0025 201 GLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLA-EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSF 279 (429)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH-HHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHH
Confidence 56666665444444433 69999999999999999999 6899999999999999998444445554 458889999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCChhhhHHHh
Q 002506 77 WEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLR-NFGYGLEWKEAIILV 155 (914)
Q Consensus 77 w~~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~-~~~~~~~~~~~~vl~ 155 (914)
|+.+++++|+++|+++|..++...+. ...|..++++.++++++|++||++.+...+ ..+...+|+++++++
T Consensus 280 we~l~~~ln~~iFiLlG~~i~~~~~~--------~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~ 351 (429)
T COG0025 280 WEVLDFLLNGLLFVLLGAQLPLSLLL--------ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLS 351 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHh
Confidence 99999999999999999999864321 233677888899999999999998776543 334467999999999
Q ss_pred hhcchhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHHHH
Q 002506 156 WSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRR 226 (914)
Q Consensus 156 w~GlRGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~~~ 226 (914)
|+|+||+|++|+|+++|....+ ..++.++++++++|++|+++||.|+|++++++...+.++.++.
T Consensus 352 w~G~RG~vsla~al~~p~~~~~------~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~~~~~~~~~~ 416 (429)
T COG0025 352 WAGPRGVVSLALALLIPLELPG------PARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKE 416 (429)
T ss_pred hcccccHHHHHHHHHchhhccc------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCccchhhhH
Confidence 9999999999999999977543 1478999999999999999999999999999999776655443
No 6
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.81 E-value=4.1e-19 Score=210.51 Aligned_cols=209 Identities=16% Similarity=0.164 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHh-ccchhHH-HhhhhHHHHHHHHHhhc
Q 002506 409 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKV-GLLEEKE-MLHLHDAVQSDLKRLLR 486 (914)
Q Consensus 409 ~ii~E~~~~~~~A~~~L~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~-Gllde~E-~~~L~~~l~~~lk~L~~ 486 (914)
.+|+.+++-++......++++.+..++.++|+.++++..+++++++|+++.|+. .-+||++ ...+.++|+.++++.+.
T Consensus 338 ~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 338 YLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred HHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 466777887888888889999999999999999999999999999999999988 3366666 45699999999998664
Q ss_pred CCCCCCCCChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeE
Q 002506 487 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 566 (914)
Q Consensus 487 ~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~ 566 (914)
.++++++|+|+++++..++.|+..++...+.||++|++|||+++.||||.+|.+++...+.+| ......
T Consensus 418 ----------~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~-~~~~~~ 486 (727)
T KOG0498|consen 418 ----------LDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGG-FFVVAI 486 (727)
T ss_pred ----------HHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCc-eEEEEE
Confidence 479999999999999999999999999999999999999999999999999999998877654 555789
Q ss_pred eCCCCccc-hhhhhcC-CCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 002506 567 FTHGSNLG-LYEVLIG-KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 567 l~~G~~fG-E~~lL~~-~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ 628 (914)
+++||+|| |+..+.. .|.++||+|.|.|+++.|.+++|..+++++|.+...+++.....+..
T Consensus 487 L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~ 550 (727)
T KOG0498|consen 487 LGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSH 550 (727)
T ss_pred ecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence 99999999 8887776 78899999999999999999999999999999999998877666665
No 7
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7e-19 Score=191.80 Aligned_cols=194 Identities=22% Similarity=0.328 Sum_probs=153.4
Q ss_pred ChhhHHHHHH----HHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHH
Q 002506 2 GLAFGIASVL----WLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFW 77 (914)
Q Consensus 2 Gi~~G~~~~~----~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw 77 (914)
|+++|+..++ .+++.--|.-...++.++.+.++|.++ +.+|.||++||.+||++++|. +-..++.+.+|.
T Consensus 197 G~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll~fs~t-~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~ 270 (574)
T COG3263 197 GLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIFSLT-GAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFF 270 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHH-HHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHh
Confidence 5556655533 334444467788999999999999999 799999999999999999883 334678899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhh
Q 002506 78 EMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS 157 (914)
Q Consensus 78 ~~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~ 157 (914)
+-+++++..++|+++|+.+...- . .......+++....++++|++.|+...-.+ +.+++|..+++|.
T Consensus 271 dG~twlaQI~MFlvLGLLvtPsq-----l---~~iavPailL~l~mifvaRP~aV~l~l~Pf-----rf~~~Ek~fvSWv 337 (574)
T COG3263 271 DGLAWLAQILMFLVLGLLVTPSQ-----L---LPIAIPAILLSLWMIFVARPLAVFLGLIPF-----RFNRREKLFVSWV 337 (574)
T ss_pred ccHHHHHHHHHHHHHHHhcCHhh-----h---hHhhHHHHHHHHHHHHHHhHHHHHHhhccc-----ccCccchheeehh
Confidence 99999999999999999886421 0 122344566777888999999997643222 3689999999999
Q ss_pred cchhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCc
Q 002506 158 GLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLS 221 (914)
Q Consensus 158 GlRGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~ 221 (914)
|+||||++.||.. |...+- +.+.++..+++.||++|++|||+|+||..+++++..++
T Consensus 338 GLRGAv~IilAif-pm~agl------ena~l~FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~ 394 (574)
T COG3263 338 GLRGAVPIILAIF-PMMAGL------ENARLFFNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPP 394 (574)
T ss_pred hcccchhhhHhhh-HHhcCC------ccceEEeehhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence 9999999999973 332211 23567778999999999999999999999999997665
No 8
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.79 E-value=9.9e-19 Score=208.04 Aligned_cols=207 Identities=17% Similarity=0.154 Sum_probs=147.0
Q ss_pred ChhhHHHHHHHHHhHh----cchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHH
Q 002506 2 GLAFGIASVLWLGFIF----NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFW 77 (914)
Q Consensus 2 Gi~~G~~~~~~l~~~~----~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw 77 (914)
|+++|+++.+.+++.. -+......+.+++++++|.+| +.+|+||+|||++||+++++..+ +.. +.....||
T Consensus 219 G~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla-~lLggSGfLAVFVAGl~~gn~~~--~~~--~~~~~~f~ 293 (810)
T TIGR00844 219 GCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFG-SMLGVDDLLVSFFAGTAFAWDGW--FAQ--KTHESNVS 293 (810)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHhcccc--hhh--hHHHhhHH
Confidence 4455554443343322 133345678889999999999 69999999999999999998643 222 22346799
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhh
Q 002506 78 EMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS 157 (914)
Q Consensus 78 ~~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~ 157 (914)
+.+..++|.++|+++|+.++...+....+ ....|..++++.++++++|+++++++.+++ +...+|+++++++|.
T Consensus 294 e~ie~LLn~~lFVlLGa~L~~~~l~~~~l---~~~~w~~ilLaL~LifVrRPpaVlll~~li---~~~~s~rErlFigWF 367 (810)
T TIGR00844 294 NVIDVLLNYAYFVYLGSILPWKDFNNGDI---GLDVWRLIILSLVVIFLRRIPAVLILKPLI---PDIKSWREAMFIGHF 367 (810)
T ss_pred HHHHHHHHHHHHHHHHHhhCHhhcccchh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccCCCHHHHHHheee
Confidence 99999999999999999998644321111 135678888888999999999888765543 234689999999999
Q ss_pred cchhHHHHHHHhhhhcccC----CC-----C-----cccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccC
Q 002506 158 GLRGAVALSLSLSVKRSSG----GS-----S-----LITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDK 219 (914)
Q Consensus 158 GlRGavsLaLal~v~~~~~----~~-----~-----~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~ 219 (914)
|+||+.++.+++..-.... .. + .+.......+..++..+|++|++|+|++.++++---.+..
T Consensus 368 GpRGIGSIyyl~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~lg~~~~~ 443 (810)
T TIGR00844 368 GPIGVGAVFAAILSKSQLESHLTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIMLGRYLNT 443 (810)
T ss_pred ccccHHHHHHHHHHHHhhhcccCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHHhccccCc
Confidence 9999988777765433221 00 0 0000124467788899999999999999999975444443
No 9
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.78 E-value=1.1e-18 Score=208.94 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=140.9
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002506 19 DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 98 (914)
Q Consensus 19 d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~ 98 (914)
+.....+++++++|++|++| |.+|.||++|++++|+++++.. +..+...++||+.++++++.++|+++|+.+..
T Consensus 220 ~~~~~~i~~l~~~l~~~~~a-~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~ 293 (562)
T PRK05326 220 AEGLYPILVLAGALLIFALT-AALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTP 293 (562)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34567789999999999999 7899999999999999998742 22345689999999999999999999999865
Q ss_pred hhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcchhHHHHHHHhhhhcccCCC
Q 002506 99 GILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGS 178 (914)
Q Consensus 99 ~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~GlRGavsLaLal~v~~~~~~~ 178 (914)
..+. ...|..++++++.++++|++++++.. ...+.+|+|+++++|+|+||++++++|. +|...+.
T Consensus 294 ~~l~--------~~~~~~l~i~~~l~~vaR~l~v~l~~-----~~~~~~~~e~~~i~~~g~RG~v~i~lA~-~~~~~~~- 358 (562)
T PRK05326 294 SRLL--------DIALPALLLALFLILVARPLAVFLSL-----LPFRFNLREKLFISWVGLRGAVPIVLAT-FPMMAGL- 358 (562)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCCCCHhhhheeeeecchhHHHHHHHH-HHHHcCC-
Confidence 3221 12333444455677899999987543 2347899999999999999999999997 4443221
Q ss_pred CcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHH
Q 002506 179 SLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSAT 223 (914)
Q Consensus 179 ~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~ 223 (914)
+ ..+.+..+++.+|++|+++||+|++++.|++++..+++.
T Consensus 359 --~---~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~ 398 (562)
T PRK05326 359 --P---NAQLIFNVVFFVVLVSLLLQGTTLPWAARKLGVVVPPEA 398 (562)
T ss_pred --C---chhhhhhhhheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence 1 134566778899999999999999999999999877654
No 10
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.73 E-value=5e-17 Score=173.41 Aligned_cols=213 Identities=15% Similarity=0.189 Sum_probs=169.3
Q ss_pred hhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchh
Q 002506 497 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 576 (914)
Q Consensus 497 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~ 576 (914)
.++++.+|+|..|++++++.+...++.+.|++|++|+++|+.++++|+|.+|.|+++...+ |++.++..+++|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~-~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQ-DRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCC-CceEEEEEeCCCchhhhH
Confidence 3689999999999999999999999999999999999999999999999999999998764 446677899999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccc
Q 002506 577 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 656 (914)
Q Consensus 577 ~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y 656 (914)
+++.+.++.++++|.++|.++.||.++|.+++.++|.+...+.+.+..++..+. +...++...+.+.+++.. .....
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rla~~-Ll~~~ 161 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV--KSLKNQKLRSSAERLANY-LLKQS 161 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCHHHHHHHH-HHHhc
Confidence 999999999999999999999999999999999999999999999988888743 233345555666666421 11111
Q ss_pred cCCcEEEecCCEEEEEEeceEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEecc
Q 002506 657 LRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIA 736 (914)
Q Consensus 657 ~~ge~I~~~~~~~~ILl~G~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~ 736 (914)
.+ .+.. ..+...-.+++ |+.-.++.+.+.++.+..++..|+ .... .++.+.|.+
T Consensus 162 ~~------~~~~------~~~~i~~t~~~-iA~~lG~tretvsR~l~~L~~~gl-~~~~------------~~i~I~d~~ 215 (236)
T PRK09392 162 LR------QGGA------DVVTLPYEKRV-LASYLGMTPENLSRAFAALASHGV-HVDG------------SAVTITDPA 215 (236)
T ss_pred cc------cCCC------cEEEeeCCHHH-HHHHhCCChhHHHHHHHHHHhCCe-EeeC------------CEEEEcCHH
Confidence 11 0000 01222222323 677778889999998888888776 3333 789999999
Q ss_pred ccc
Q 002506 737 AFE 739 (914)
Q Consensus 737 ~~~ 739 (914)
+|+
T Consensus 216 ~L~ 218 (236)
T PRK09392 216 GLA 218 (236)
T ss_pred HHH
Confidence 997
No 11
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-17 Score=184.51 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=175.5
Q ss_pred hhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccch
Q 002506 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 575 (914)
Q Consensus 496 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE 575 (914)
+++.+....++++|.+.++++++.||.+..|.+|++|++|||+++++|++..|.+.|.+.+ ..+..+++|.+|||
T Consensus 152 I~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g-----~ll~~m~~gtvFGE 226 (732)
T KOG0614|consen 152 IRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREG-----KLLGKMGAGTVFGE 226 (732)
T ss_pred HHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCC-----eeeeccCCchhhhH
Confidence 4567888999999999999999999999999999999999999999999999999998754 56789999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhcccccc
Q 002506 576 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 655 (914)
Q Consensus 576 ~~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~ 655 (914)
+++|.+++|+|+|+|+++|++|.|+++.|+.+|.....-+..-+.++..... +|.+++..-+.+.+ +......
T Consensus 227 LAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~------~~q~l~Ee~L~Kia-D~le~~~ 299 (732)
T KOG0614|consen 227 LAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVP------LFQNLPEELLLKIA-DVLEEEY 299 (732)
T ss_pred HHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhccCCHHHHHHHH-HHHHHHh
Confidence 9999999999999999999999999999999998877666666666666655 55677765555554 6777889
Q ss_pred ccCCcEEEecC---CEEEEEEeceEEeeccchhhcCCCcccCCCCc-----cccccccccCCcccccccccchhhheecc
Q 002506 656 CLRGEIIEIPY---HCIGFLLEGFIKTHGLQEELITPPAALIPSQG-----NLSFRSAETSGVEAVSFSHQGSCYLVETR 727 (914)
Q Consensus 656 y~~ge~I~~~~---~~~~ILl~G~V~~~~~~eeli~ap~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ve~~ 727 (914)
|..|+.|..++ ++++||..|.|+.++.. |.-..|..+-.-+. -++|.+.+ -+++..+--+..
T Consensus 300 Yd~g~yIirqge~G~~ffii~~G~V~vtq~~-e~~~q~~~lr~l~kGd~FGE~al~~ed---------vRtAniia~~~g 369 (732)
T KOG0614|consen 300 YDAGEYIIRQGEKGDTFFIISKGTVKVTQQD-EGSTQPQELRTLNKGDYFGERALLGED---------VRTANIIAQAPG 369 (732)
T ss_pred hcCCceEEeecCCCCeEEEEecceEEEeecC-CCCCchhHHhhccccchhhHHHhhccC---------ccchhhhccCCC
Confidence 99999999987 48999999999998865 43344444111000 11111111 145555666666
Q ss_pred ceEEEEeccccc
Q 002506 728 ARVIIFDIAAFE 739 (914)
Q Consensus 728 ~~~~~~d~~~~~ 739 (914)
..++.+|-+.|.
T Consensus 370 v~cl~lDresF~ 381 (732)
T KOG0614|consen 370 VECLTLDRESFK 381 (732)
T ss_pred ceEEEecHHHHH
Confidence 777788877664
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.72 E-value=2.9e-16 Score=196.04 Aligned_cols=191 Identities=10% Similarity=0.145 Sum_probs=166.8
Q ss_pred HHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCCC
Q 002506 427 DVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPL 505 (914)
Q Consensus 427 ~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gllde~E-~~~L~~~l~~~lk~L~~~p~~~~~~~~~~lL~~~pl 505 (914)
.++...-.+.++|+.++++..+.++.++|++..++..-+++.+ ...|.+.|..++.... ..++++++|+
T Consensus 312 ~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l----------~~~~l~~~~l 381 (823)
T PLN03192 312 EFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL----------FLPVVEKVYL 381 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH----------HHHHHhhCcc
Confidence 3455666788899999999999999999999988876566655 3456777766665432 1467899999
Q ss_pred CCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCce
Q 002506 506 LRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYM 585 (914)
Q Consensus 506 F~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~ 585 (914)
|++++++.+..|+..++.+.|.|||.|+.+||.++.+|||.+|.|++... .++++.++..+++|++|||.+++.+.|++
T Consensus 382 F~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~ 460 (823)
T PLN03192 382 FKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGALCCRPQS 460 (823)
T ss_pred hhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999864 34566677899999999999999999999
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 002506 586 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 586 atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ 628 (914)
++++|.+.|+++.|++++|.++++++|+....+.+++..++.+
T Consensus 461 ~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~ 503 (823)
T PLN03192 461 FTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKE 503 (823)
T ss_pred CeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998887765
No 13
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.67 E-value=1.9e-15 Score=167.55 Aligned_cols=183 Identities=15% Similarity=0.246 Sum_probs=154.6
Q ss_pred HHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-chhHHHhh-hhHHHHHHHHHhhcCCCCCCCCChhhHHhcC
Q 002506 426 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEKEMLH-LHDAVQSDLKRLLRNPPLVKFPKISDLISAH 503 (914)
Q Consensus 426 ~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gl-lde~E~~~-L~~~l~~~lk~L~~~p~~~~~~~~~~lL~~~ 503 (914)
.++|...-.+.++|+-|+++..+..++.++..++|.++. .||+|... |.+.+...+.--. ..+-|+++
T Consensus 243 ~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nv----------h~dTLkkV 312 (536)
T KOG0500|consen 243 TEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINV----------HLDTLKKV 312 (536)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHH----------HHHHHHhh
Confidence 345666677889999999999999999999999998887 67776543 5555555544211 14679999
Q ss_pred CCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhh----
Q 002506 504 PLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL---- 579 (914)
Q Consensus 504 plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL---- 579 (914)
++|+...+..+.+|+-.+++..|.||++||++||.+..||+|.+|.+.+...+ |.. ...++..|++|||++++
T Consensus 313 ~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD--g~t-~~~~L~~G~~FGEisIlni~g 389 (536)
T KOG0500|consen 313 RIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD--GVT-VFVTLKAGSVFGEISILNIKG 389 (536)
T ss_pred hHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC--CcE-EEEEecCCceeeeeEEEEEcC
Confidence 99999999999999999999999999999999999999999999999997544 433 35789999999999988
Q ss_pred --cCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHH
Q 002506 580 --IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQ 621 (914)
Q Consensus 580 --~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~ 621 (914)
.|.+|+|+|+....+.+++++++|+.+.++++|+-...+..+
T Consensus 390 ~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 390 NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 367899999999999999999999999999999887766533
No 14
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.65 E-value=8.8e-16 Score=171.85 Aligned_cols=202 Identities=15% Similarity=0.203 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhc-cchhHHHhhhhHHHHHHHHH
Q 002506 405 GIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVG-LLEEKEMLHLHDAVQSDLKR 483 (914)
Q Consensus 405 ~v~~~ii~E~~~~~~~A~~~L~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~G-llde~E~~~L~~~l~~~lk~ 483 (914)
.+-..+|+.++.-+-.|.+--+++|...-+-..+|+...++..+.++++.++++-|++. .+||++ |.+.+..+++.
T Consensus 442 FvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~---ll~~LP~klq~ 518 (815)
T KOG0499|consen 442 FVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESD---LLKTLPTKLQL 518 (815)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHH---HHHhcchhhee
Confidence 44456778888877788777888999999999999999999999999999999999665 599996 34444444442
Q ss_pred hhcCCCCCCCCChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEE
Q 002506 484 LLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSL 563 (914)
Q Consensus 484 L~~~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~ 563 (914)
-.. ..---..|.++.+|++++...+.+++..++...|.||++||++||.+..||+|..|.|.|....++. .+
T Consensus 519 dlA------i~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~--~V 590 (815)
T KOG0499|consen 519 DLA------IDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT--KV 590 (815)
T ss_pred eee------EEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC--EE
Confidence 100 0011257899999999999999999999999999999999999999999999999999998765443 45
Q ss_pred EeEeCCCCccchhhhhc---CCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHH
Q 002506 564 HPVFTHGSNLGLYEVLI---GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDF 617 (914)
Q Consensus 564 ~~~l~~G~~fGE~~lL~---~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~ 617 (914)
+.++..|++|||+++|. |.+|+|+|+|...|.++.++++++.+++..+|+-+.-
T Consensus 591 l~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~i 647 (815)
T KOG0499|consen 591 LVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRI 647 (815)
T ss_pred EEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHH
Confidence 68999999999999984 6789999999999999999999999999999976543
No 15
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=4e-16 Score=167.19 Aligned_cols=173 Identities=13% Similarity=0.185 Sum_probs=148.9
Q ss_pred hhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchh
Q 002506 497 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 576 (914)
Q Consensus 497 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~ 576 (914)
.+.+++.-+|++|+++++..+++++.++.+++|+.|+++|+.++.+|+|.+|.+.|+..+ ..+..+++|..|||+
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-----~~v~~~~~g~sFGEl 195 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-----TYVTTYSPGGSFGEL 195 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-----eEEeeeCCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999999873 346789999999999
Q ss_pred hhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccc
Q 002506 577 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTC 656 (914)
Q Consensus 577 ~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y 656 (914)
+++.+.||.|||+|.+++.+|.+++..|.+++..+.....+|+........- ++++...+ +.++++......|
T Consensus 196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pi------l~~l~k~e-r~kv~dal~~k~y 268 (368)
T KOG1113|consen 196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPI------LESLEKLE-RAKVADALGTKSY 268 (368)
T ss_pred HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchh------hHHHHHHH-HHhhhcccceeec
Confidence 9999999999999999999999999999999999988889998887776663 22222222 2233466777799
Q ss_pred cCCcEEEecC---CEEEEEEeceEEeec
Q 002506 657 LRGEIIEIPY---HCIGFLLEGFIKTHG 681 (914)
Q Consensus 657 ~~ge~I~~~~---~~~~ILl~G~V~~~~ 681 (914)
..|+.|+.+. +.++||.+|++....
T Consensus 269 ~~G~~Vi~qg~~ge~f~~i~eGEvdv~~ 296 (368)
T KOG1113|consen 269 KDGERVIVQGDQGEHFYIIEEGEVDVLK 296 (368)
T ss_pred cCCceEEeccCCcceEEEecccccchhh
Confidence 9999988873 488999999988754
No 16
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.63 E-value=2.4e-15 Score=157.37 Aligned_cols=196 Identities=15% Similarity=0.089 Sum_probs=152.3
Q ss_pred CCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCC-Cce
Q 002506 507 RELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGK-PYM 585 (914)
Q Consensus 507 ~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~-~r~ 585 (914)
+.+++++++.+.+.++.+.|++|++|+++|++++++|+|.+|.++++..+.+|++.....+++|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4588999999999999999999999999999999999999999999998888888888999999999999998864 688
Q ss_pred eEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccccCCcEEEec
Q 002506 586 SDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIP 665 (914)
Q Consensus 586 atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~ 665 (914)
++++|.++|.++.|+.++|.+++.++|.+...+.+.++.++.... .....+...+.+.+++. .....+........
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~Rl~~-~L~~l~~~~~~~~~- 161 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTS--RKVGDLAFLDVTGRIAQ-TLLDLAKQPDAMTH- 161 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHhcChhhHHHH-HHHHHHHhcCCcCC-
Confidence 999999999999999999999999999999999998888886532 23335556666666631 11111111110001
Q ss_pred CCEEEEEEeceEEeeccchhhcCCCcccCCCCccccccccccCCcccccc
Q 002506 666 YHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSF 715 (914)
Q Consensus 666 ~~~~~ILl~G~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (914)
++ ++ .+. -.+ +-|++-.++.|.+.++.+..++..|+....-
T Consensus 162 ~~--~~----~~~--~t~-~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 162 PD--GM----QIK--ITR-QEIGRIVGCSREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CC--ce----ecC--CCH-HHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 11 11 111 124 3378888888999999998888888766554
No 17
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-14 Score=163.64 Aligned_cols=236 Identities=16% Similarity=0.215 Sum_probs=178.9
Q ss_pred ChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccc
Q 002506 495 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 574 (914)
Q Consensus 495 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fG 574 (914)
.+++++.++|+|+.|++++++.|...+...+|.+||+|+.-|.+.+++|+|.+|.|++...+ |+ ++..+..|+.||
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--g~--v~~~~~~gdlFg 79 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--GE--VLDRLAAGDLFG 79 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--Ce--eeeeeccCcccc
Confidence 45789999999999999999999999999999999999999999999999999999997654 43 578899999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccc
Q 002506 575 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMT 654 (914)
Q Consensus 575 E~~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~ 654 (914)
-.+++++.+-...+.|++++.||.||++.|.+++.++|+|++++-...+.+++.+.. +..+.-...=+..++.+....+
T Consensus 80 ~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~-~~~eq~~~e~~~trv~~~~~~~ 158 (610)
T COG2905 80 FSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIAD-RLAEQGESEFILTRVGEVKTLP 158 (610)
T ss_pred chhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHHhhccchHHHHHHHHHhcCC
Confidence 999999888788899999999999999999999999999999999999999997442 2222111111222222111111
Q ss_pred --cccCCcEEE-------ecCCEEEEEE------eceEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccc
Q 002506 655 --TCLRGEIIE-------IPYHCIGFLL------EGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQG 719 (914)
Q Consensus 655 --~y~~ge~I~-------~~~~~~~ILl------~G~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (914)
++.+..+|. ..+.+..+++ .|.|+.+++...+|...- +-.......|......+-...|.|++
T Consensus 159 ~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~--~~~~~V~evmT~p~~svd~~~~~feA 236 (610)
T COG2905 159 AVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR--SKTQKVSEVMTSPVISVDRGDFLFEA 236 (610)
T ss_pred CcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC--CcccchhhhhccCceeecCcchHHHH
Confidence 111111100 0000111222 357777777645444332 23466678899999999999999999
Q ss_pred hhhheeccceEEEEeccc
Q 002506 720 SCYLVETRARVIIFDIAA 737 (914)
Q Consensus 720 ~~~~ve~~~~~~~~d~~~ 737 (914)
.+-|.+.+.+|++|-.++
T Consensus 237 ml~m~r~~I~hl~V~e~g 254 (610)
T COG2905 237 MLMMLRNRIKHLPVTEDG 254 (610)
T ss_pred HHHHHHhCCceeeeecCC
Confidence 999999999999998775
No 18
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.57 E-value=8.4e-15 Score=155.48 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=151.9
Q ss_pred HHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEE
Q 002506 516 PLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVL 595 (914)
Q Consensus 516 ~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ 595 (914)
.+.+.++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.++++++.|.++|.
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 47778889999999999999999999999999999999999889998889999999999999999999999999999999
Q ss_pred EEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccccCCcEEEecCCEEEEEEec
Q 002506 596 CFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEG 675 (914)
Q Consensus 596 ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~~~~~~ILl~G 675 (914)
++.||.++|.+++.++|.+...+.+.+..++..... .+.. ....+++.+++.. +.....+ +
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~Rla~~--L~~~~~~-------~-------- 166 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIV-SLTQ-NQSFPLENRLAAF--ILLTQEG-------D-------- 166 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHH-hccChHHHHHHHH--HHhcccC-------C--------
Confidence 999999999999999999999998888887665332 2221 2223566666421 1111111 0
Q ss_pred eEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEeccccc
Q 002506 676 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 739 (914)
Q Consensus 676 ~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~~~ 739 (914)
... ..+++ |++-.++.|.+.++.+..++..|+..... .++.+.|.++|.
T Consensus 167 ~~~--~t~~~-lA~~lG~sretvsR~L~~L~~~G~I~~~~------------~~i~I~d~~~L~ 215 (226)
T PRK10402 167 LYH--EKHTQ-AAEYLGVSYRHLLYVLAQFIQDGYLKKSK------------RGYLIKNRKQLS 215 (226)
T ss_pred ccc--chHHH-HHHHHCCcHHHHHHHHHHHHHCCCEEeeC------------CEEEEeCHHHHH
Confidence 010 12434 67777878889999999988888876666 789999999886
No 19
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.56 E-value=1.2e-14 Score=154.98 Aligned_cols=215 Identities=13% Similarity=0.062 Sum_probs=162.4
Q ss_pred HhcCCCCCCCCcccHHHHhccCE-EEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhh
Q 002506 500 ISAHPLLRELPPSVREPLELSTK-EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV 578 (914)
Q Consensus 500 L~~~plF~~Ls~e~l~~L~~~~~-~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~l 578 (914)
+++.+.|..+++++++.|..... .+.|++|++|+++||.++++|+|.+|.|+++..+.+|++.+...+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 55666666799999999999886 46899999999999999999999999999999998898888888999999999776
Q ss_pred hcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccccC
Q 002506 579 LIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR 658 (914)
Q Consensus 579 L~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y~~ 658 (914)
+. .+++++++|.+++.++.||++.|.+++.++|.+...+.+.+..++.... .....+...+.+.+++.. .......
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~Rla~~-L~~l~~~ 170 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQ--EMILLLSKKNAEERLAAF-IYNLSRR 170 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHH--HHHHHHhCCCHHHHHHHH-HHHHHHH
Confidence 54 4566789999999999999999999999999999999999888877632 233334445556665311 1111100
Q ss_pred -CcEEEecCCEEEEEEeceEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEeccc
Q 002506 659 -GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAA 737 (914)
Q Consensus 659 -ge~I~~~~~~~~ILl~G~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~ 737 (914)
|.. ..+. +.+...=.+++ |++-.++.|.+.++.+..++..|+..... .++.+.|.++
T Consensus 171 ~~~~---~~~~------~~~~~~lt~~~-iA~~lG~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~~~ 228 (235)
T PRK11161 171 FAQR---GFSP------REFRLTMTRGD-IGNYLGLTVETISRLLGRFQKSGMLAVKG------------KYITIENNDA 228 (235)
T ss_pred Hhhc---CCCC------ceeEccccHHH-HHHHhCCcHHHHHHHHHHHHHCCCEEecC------------CEEEEcCHHH
Confidence 100 0000 01111112423 77777888889999999999888888777 7889999998
Q ss_pred ccc
Q 002506 738 FEA 740 (914)
Q Consensus 738 ~~~ 740 (914)
|+.
T Consensus 229 L~~ 231 (235)
T PRK11161 229 LAQ 231 (235)
T ss_pred HHH
Confidence 863
No 20
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.54 E-value=6.4e-14 Score=129.73 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=108.5
Q ss_pred CCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 002506 505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 584 (914)
Q Consensus 505 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r 584 (914)
+|..++++++..+.+.++...+.+|++|+.+|+.++++|+|.+|.+++...+.+|++.....+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 58899999999999999999999999999999999999999999999999988888888899999999999999988999
Q ss_pred eeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHH
Q 002506 585 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 618 (914)
Q Consensus 585 ~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l 618 (914)
.++++|.++|.++.|+.++|.+++.++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999988765
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.52 E-value=2.5e-14 Score=147.47 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=145.4
Q ss_pred CceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCC--ceeEEEEcceEEEEEEcHHHHHH
Q 002506 529 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKP--YMSDMVTDSVVLCFFIESDKILS 606 (914)
Q Consensus 529 Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~--r~atV~A~t~~~ll~I~~~~f~~ 606 (914)
|++|+++||+++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+ +.++++|.++|.++.||+++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 7899999999999999999999999999889998889999999999999998775 45789999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhcc--ccccccCCcEEEecCCEEEEEEeceEEeeccch
Q 002506 607 ILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERS--KMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQE 684 (914)
Q Consensus 607 ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s--~l~~y~~ge~I~~~~~~~~ILl~G~V~~~~~~e 684 (914)
++.++|.+...+.+.+..++.... ...+.+...+.+.+++... ....+.. +.+. ++ .+...-+++
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rla~~L~~l~~~~~~------~~~~-~~----~~~~~~t~~ 147 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTE--MMIETLAHRDMGSRLVSFLLILCRDFGV------PGQR-GV----TIDLRLSHQ 147 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHHhCC------CCCC-eE----EecCCCCHH
Confidence 999999999999999998888742 3344555566666664211 1112211 1110 00 111222343
Q ss_pred hhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEecccccc
Q 002506 685 ELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEA 740 (914)
Q Consensus 685 eli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~~~~ 740 (914)
+ |+.-.++.|.+.++.+..++..|+....+ .++++.|.++|..
T Consensus 148 ~-iA~~lG~tretvsR~l~~l~~~g~I~~~~------------~~i~I~d~~~L~~ 190 (193)
T TIGR03697 148 A-IAEAIGSTRVTITRLLGDLRKKKLISIHK------------KKITVHDPIALGQ 190 (193)
T ss_pred H-HHHHhCCcHHHHHHHHHHHHHCCCEEecC------------CEEEEeCHHHHHH
Confidence 4 78888889999999999999999888777 8999999998863
No 22
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.48 E-value=6.4e-13 Score=138.01 Aligned_cols=202 Identities=20% Similarity=0.241 Sum_probs=150.5
Q ss_pred hcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhc
Q 002506 501 SAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI 580 (914)
Q Consensus 501 ~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~ 580 (914)
...+.|..++++....+......+.+++|++|+++|++++++|+|.+|.++++..+.+|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777788888888888899999999999999999999999999999999999889999899999999999999999
Q ss_pred CCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhc-cccccccCC
Q 002506 581 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAER-SKMTTCLRG 659 (914)
Q Consensus 581 ~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~-s~l~~y~~g 659 (914)
+.+++++++|.++|+++.++++.|.+++.++|.+...+...+..++..... ....+...+...+++.. ..+...
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~r~~~~l~~l~~~--- 157 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALE--RLSLLARKDVEERLARFLLNLGRR--- 157 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHH--HHHHHhhccHHHHHHHHHHHHhhc---
Confidence 989999999999999999999999999866999999999999999998432 22334444555554311 111111
Q ss_pred cEEEecCCEEEEEEeceEEeeccchhhcCCCcccCCCCccccccccccCCcccccc
Q 002506 660 EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSF 715 (914)
Q Consensus 660 e~I~~~~~~~~ILl~G~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (914)
...+... ++++.-.++ + +.++.-++..+.+..+.+.++...|+.....
T Consensus 158 --~~~~~~~-~~~~~~~~~----~-~~ia~~~g~~~~~vsr~l~~l~~~g~i~~~~ 205 (214)
T COG0664 158 --LGIATED-GILIPLPLT----H-KDLAEYLGLSRETVSRILKELRKDGLISVRG 205 (214)
T ss_pred --cCCCCCC-CcEEeccCC----H-HHHHHHhCCchhhHHHHHHHHHhCCcEeeCC
Confidence 0011110 001111222 2 3355555667777777777777777665555
No 23
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.46 E-value=4.5e-13 Score=119.88 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=86.6
Q ss_pred EEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEcHH
Q 002506 523 EIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 602 (914)
Q Consensus 523 ~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll~I~~~ 602 (914)
++.|++|++|+++|+.++++|+|++|.+++...+.+++..+...+++|++||+.+++.+.++.++++|.++|+++.||++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 36799999999999999999999999999999999998877889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHH
Q 002506 603 KILSILRSDPA 613 (914)
Q Consensus 603 ~f~~ll~~~p~ 613 (914)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999985
No 24
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.44 E-value=6.7e-13 Score=141.36 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=145.3
Q ss_pred HhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEE
Q 002506 517 LELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLC 596 (914)
Q Consensus 517 L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~l 596 (914)
+...+..+.|++|++|+++||.++++|+|.+|.|+++..+.+|++.+...+.+|++||+. .+.++.++++|.++|.+
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 455678899999999999999999999999999999999888888888889999999964 46678899999999999
Q ss_pred EEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhccccccccC-CcEEEecCCEEEEEEec
Q 002506 597 FFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLR-GEIIEIPYHCIGFLLEG 675 (914)
Q Consensus 597 l~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s~l~~y~~-ge~I~~~~~~~~ILl~G 675 (914)
+.|+.++|++++.++|.+...+++.+..++.... +....+...+.+.+++.. ....... |. .+
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~--~~~~~l~~~~~~~Rla~~-Ll~l~~~~g~-------------~~ 174 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQ--DHMLLLGRKTAMERVAAF-LLEMDERLGG-------------AG 174 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHH--HHHHHHcCCCHHHHHHHH-HHHHHHHhCC-------------CC
Confidence 9999999999999999999999999998888642 222234445566665411 1111110 11 01
Q ss_pred eEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEeccccc
Q 002506 676 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 739 (914)
Q Consensus 676 ~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~~~ 739 (914)
.+...-.+ +-|++-.++.|.+.++.+..++..|+..... +.++.+.|.++|+
T Consensus 175 ~i~i~lt~-~~IA~~lGisretlsR~L~~L~~~GlI~~~~-----------~~~i~I~D~~~L~ 226 (230)
T PRK09391 175 MMALPMSR-RDIADYLGLTIETVSRALSQLQDRGLIGLSG-----------ARQIELRNRQALR 226 (230)
T ss_pred EEEecCCH-HHHHHHHCCCHHHHHHHHHHHHHCCcEEecC-----------CceEEEcCHHHHH
Confidence 11111134 3378888888888888888888877764321 2678899998875
No 25
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.44 E-value=4.9e-13 Score=139.04 Aligned_cols=187 Identities=11% Similarity=0.090 Sum_probs=141.4
Q ss_pred cCEEEEecCCceeecCCC--CCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEE
Q 002506 520 STKEIMKLSGVTLYREGS--KPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCF 597 (914)
Q Consensus 520 ~~~~~~~~~Ge~I~~eGe--~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll 597 (914)
..+...|++|++|+++|| +++++|+|++|.|+++..+.+|++.++..+++|++||+.+++ +.++++++.|.++|.++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456788999999999999 779999999999999999999999999999999999997654 67889999999999999
Q ss_pred EEcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhhhHHHhhcCHHHHHHHHHhcc--ccccccCCcEEEecCCEEEEEEec
Q 002506 598 FIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERS--KMTTCLRGEIIEIPYHCIGFLLEG 675 (914)
Q Consensus 598 ~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ll~~~i~e~Ls~~dlr~ll~~~s--~l~~y~~ge~I~~~~~~~~ILl~G 675 (914)
.|+.+.| +|.+...+...+..++.... ...+.+...+.+.+++... ....+ +.. ..+ .+
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~--~~~~~l~~~~~~~Rla~~Ll~l~~~~--~~~---~~~------~~ 144 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY--ESIYRLVGQRLKNRIAAALLELSDTP--LAT---QED------SG 144 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH--HHHHHHHhCchHHHHHHHHHHHHHHh--CCC---CCC------CC
Confidence 9999987 57777788888777777643 2344455556666664111 11111 100 011 11
Q ss_pred eEEeeccchhhcCCCcccCCCCccccccccccCCcccccccccchhhheeccceEEEEeccccc
Q 002506 676 FIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 739 (914)
Q Consensus 676 ~V~~~~~~eeli~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~~~ 739 (914)
.+...=++++ |+.-.++.|.+.++.+..++..|+..... .++.+.|.++|+
T Consensus 145 ~~~~~~t~~~-iA~~lG~tretvsR~l~~l~~~g~I~~~~------------~~i~I~d~~~L~ 195 (202)
T PRK13918 145 ETMIYATHDE-LAAAVGSVRETVTKVIGELSREGYIRSGY------------GKIQLLDLKGLE 195 (202)
T ss_pred eEEecCCHHH-HHHHhCccHHHHHHHHHHHHHCCCEEcCC------------CEEEEECHHHHH
Confidence 2222223534 78888889999999999999989887666 889999999886
No 26
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.40 E-value=3.5e-12 Score=118.56 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=105.3
Q ss_pred CCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhh--cCC
Q 002506 505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL--IGK 582 (914)
Q Consensus 505 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL--~~~ 582 (914)
+|.+++++.++.+...++.+.+.+|++|+++|++++++|+|.+|.+++...+.+|+......+++|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999998888888888999999999999988 456
Q ss_pred CceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHH
Q 002506 583 PYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLW 619 (914)
Q Consensus 583 ~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~ 619 (914)
++..++.|.++|.++.++.+.|...+..++.+...+.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7889999999999999999999999998887765443
No 27
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-12 Score=145.34 Aligned_cols=127 Identities=16% Similarity=0.271 Sum_probs=115.2
Q ss_pred hhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCC-CcEEEEeEeCCCCccc
Q 002506 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR-NKHSLHPVFTHGSNLG 574 (914)
Q Consensus 496 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~-g~~~~~~~l~~G~~fG 574 (914)
..++|+.+|+|++||++.+.++++++...+|..|++|+++|+.++.+|+|.+|.|+++..+.+ ++...+.++..||+||
T Consensus 270 ~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FG 349 (732)
T KOG0614|consen 270 YMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFG 349 (732)
T ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhh
Confidence 468999999999999999999999999999999999999999999999999999999988755 5556678999999999
Q ss_pred hhhhhcCCCceeEEEEcce-EEEEEEcHHHHHHHHhhCHHHHHHHHHHH
Q 002506 575 LYEVLIGKPYMSDMVTDSV-VLCFFIESDKILSILRSDPAVEDFLWQQS 622 (914)
Q Consensus 575 E~~lL~~~~r~atV~A~t~-~~ll~I~~~~f~~ll~~~p~~~~~l~~~l 622 (914)
|-+++....|+|+++|... ++|+.|+++.|.+++....++..+-+..-
T Consensus 350 E~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~ 398 (732)
T KOG0614|consen 350 ERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDE 398 (732)
T ss_pred HHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccch
Confidence 9999999999999999988 99999999999999987777775555433
No 28
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.28 E-value=1.4e-11 Score=142.33 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=104.9
Q ss_pred ChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccc
Q 002506 495 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 574 (914)
Q Consensus 495 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fG 574 (914)
++.++++++|+|++|++++++.+..+++.+.|.+|++|+++|+.++++|+|++|.|++...+.+| +.++..+++|++||
T Consensus 5 ~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG 83 (413)
T PLN02868 5 SVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEee
Confidence 45678999999999999999999999999999999999999999999999999999999988777 55677899999999
Q ss_pred hhhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCH
Q 002506 575 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 612 (914)
Q Consensus 575 E~~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p 612 (914)
+. +.+.++.++++|.++|+++.|++++|..+...++
T Consensus 84 ~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 84 YG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred hh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 85 7889999999999999999999999988765554
No 29
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.24 E-value=1.8e-12 Score=148.15 Aligned_cols=171 Identities=25% Similarity=0.359 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002506 18 NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIA 97 (914)
Q Consensus 18 ~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~ 97 (914)
++...+..++++++|++|++| |.+|+||+++++++|+++++ ....++.++.++.+|+ .+++.+.|+++|+.+.
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~a-~~~g~s~~l~af~~Gl~~~~---~~~~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~ 281 (380)
T PF00999_consen 209 PSSEIFILLVLALILLLYGLA-EILGLSGILGAFIAGLILSN---SPFAERLEEKLESFWY---GFFIPLFFVFIGMSLD 281 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhHHHHHHHHhhhcccc-ccccccccceeeeeehcccc---ccccchhhhcccchhh---HHHhhHHhhhhccccc
Confidence 677889999999999999999 68899999999999999984 3344556666788888 8999999999999987
Q ss_pred hhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcc-hhHHHHHHHhhhhcccC
Q 002506 98 EGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSG 176 (914)
Q Consensus 98 ~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~Gl-RGavsLaLal~v~~~~~ 176 (914)
...+. .....|..+++++++++++|++.++...+.. +.+|+++..++|++. ||.++++++.......
T Consensus 282 ~~~l~------~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~- 349 (380)
T PF00999_consen 282 FSSLF------NSPSVIILVLLLLIAILLGKFIGVYLASRLF-----GIPWKEALFIGLGMLPRGEVSLALALIALNLG- 349 (380)
T ss_dssp ----------------------------------------------------HHHHTTTTSS--HHHHHHHHHHHHH---
T ss_pred ccccc------cchhhhhhHHHHHHHHHHhhhceeehhhhhc-----ccccchhHHHHHhhcCccHHHHHHHHHHHhcC-
Confidence 43221 0235666777777888899999997665443 679999999999999 9999999998777652
Q ss_pred CCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhh
Q 002506 177 GSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHL 214 (914)
Q Consensus 177 ~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~ 214 (914)
.. .+.+...+..++++|++++|.+++++++|
T Consensus 350 ---~~----~~~~~~~~~~~vl~t~ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 350 ---II----SEQMFTIIIAAVLLTIIIAGIILSPLLRK 380 (380)
T ss_dssp --------------------------------------
T ss_pred ---CC----CHHHHHHheeeeeeHHHHHHHHHHHHhcC
Confidence 11 12236677889999999999999999876
No 30
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.90 E-value=6.3e-09 Score=111.11 Aligned_cols=202 Identities=17% Similarity=0.205 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHHhH----hcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHH
Q 002506 2 GLAFGIASVLWLGFI----FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFW 77 (914)
Q Consensus 2 Gi~~G~~~~~~l~~~----~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw 77 (914)
|.++|+++...+++- .-|...-..+-+++++++-.+. +.+|++-.+-.++||+++++-+ -|+.+++. .++-
T Consensus 219 G~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gig-tiiGvddLl~sFfAGi~Fswd~--wFsk~t~~--s~v~ 293 (467)
T KOG4505|consen 219 GCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIG-TIIGVDDLLVSFFAGIVFSWDE--WFSKKTKE--SRVS 293 (467)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhh-heechhHHHHHHHhhhhcchhH--Hhhhhhhh--ccHH
Confidence 556666655555442 3566667788888999999999 7999999999999999998732 34544443 5667
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhh
Q 002506 78 EMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWS 157 (914)
Q Consensus 78 ~~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~ 157 (914)
+.+..++|..-|++.|..+|-.-+... .-....|..+++...++++-|...++.+.|+..-. .+|||++++.|.
T Consensus 294 ~viD~lls~sfF~yfGaiipwsqFn~s---~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdi---kswkEALFvGhF 367 (467)
T KOG4505|consen 294 EVIDLLLSLSFFLYFGAIIPWSQFNLS---VEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDI---KSWKEALFVGHF 367 (467)
T ss_pred HHHHHHHHHHHHHHhccccchhhcCCc---ccCchHHHHHHHHHHHHHhcccceEEEeccCCcch---hhHHHHHHhccC
Confidence 788889999999999999985322111 01245688888888888899999998888865332 489999999999
Q ss_pred cchhHHHHHHHhhhhcccCC---------CCcccccccceehhhhhhhhhhhhhhhhccHHHHHhh
Q 002506 158 GLRGAVALSLSLSVKRSSGG---------SSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHL 214 (914)
Q Consensus 158 GlRGavsLaLal~v~~~~~~---------~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~ 214 (914)
|+-|.-++-.|+........ +..+.-..-+.+..++..+|+.|++|+|.+.+.+.-+
T Consensus 368 GPIGVgAly~allar~~le~~ep~~~i~~~e~~~w~li~~iwpivsf~vlsSIiVHG~sv~~~tl~ 433 (467)
T KOG4505|consen 368 GPIGVGALYYALLARKELETLEPEKSIYESETVFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYTLG 433 (467)
T ss_pred CCccHHHHHHHHHHHhhhccCCcccccCCccccchhhhhhhhhhhHHHHHHHHHhccchhhHHHHH
Confidence 99998888877744321110 0000001223466778889999999999999876544
No 31
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=2.5e-09 Score=115.56 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=104.8
Q ss_pred hhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccch
Q 002506 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 575 (914)
Q Consensus 496 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE 575 (914)
..++|..+|.++.|...+...+++.+..+.|++|+.|+.+|+.++.+|+|.+|.|.+.... +| +.+ .++.|++|||
T Consensus 238 y~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyfge 313 (368)
T KOG1113|consen 238 YEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYFGE 313 (368)
T ss_pred hhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhhcch
Confidence 3678999999999999999999999999999999999999999999999999999998776 33 434 8999999999
Q ss_pred hhhhcCCCceeEEEEcceEEEEEEcHHHHHHHHhhCHH
Q 002506 576 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPA 613 (914)
Q Consensus 576 ~~lL~~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~ 613 (914)
.+++.+.||.|+|.|.+...|..+++..|++++.-.-+
T Consensus 314 ~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 314 LALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred HHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 99999999999999999999999999999999974433
No 32
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.82 E-value=3e-08 Score=111.72 Aligned_cols=192 Identities=14% Similarity=0.171 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-chhH-HHhhhhHHHHHHHHHhhc
Q 002506 409 VVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL-LEEK-EMLHLHDAVQSDLKRLLR 486 (914)
Q Consensus 409 ~ii~E~~~~~~~A~~~L~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gl-lde~-E~~~L~~~l~~~lk~L~~ 486 (914)
.|++.+..+...=.+.| ..+.+.+|-.+++..+-+++.+|+-.-|.... ||.+ -..-..+ +++.
T Consensus 474 TI~QQM~s~T~rYHeMl-------nnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPK----DMkA--- 539 (971)
T KOG0501|consen 474 TIIQQMTSNTNRYHEML-------NNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPK----DMKA--- 539 (971)
T ss_pred HHHHHHHhhhHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCcc----cccc---
Confidence 35566655544333333 34566699999999999999999987775443 4444 2111122 2221
Q ss_pred CCCCCCCCChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeE
Q 002506 487 NPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPV 566 (914)
Q Consensus 487 ~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~ 566 (914)
.+-..--+..++.+|.|.--++..+..|.-.+......||+.||+.|+..+.++||++|.+++...+ .++..
T Consensus 540 ---DICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-----EVVAI 611 (971)
T KOG0501|consen 540 ---DICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-----EVVAI 611 (971)
T ss_pred ---ceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-----cEEEE
Confidence 0111122567899999999999999999988888888999999999999999999999999998876 45789
Q ss_pred eCCCCccchhhhhcC--CCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHH
Q 002506 567 FTHGSNLGLYEVLIG--KPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQS 622 (914)
Q Consensus 567 l~~G~~fGE~~lL~~--~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l 622 (914)
+|.||+||..---.+ ...-|+|+|.+.|.+-.|.++.+.+.++-+..|...+-+++
T Consensus 612 LGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 612 LGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred eecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 999999998732221 23457899999999999999999999988887776665554
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.46 E-value=2.3e-07 Score=109.72 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=98.8
Q ss_pred ccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEE
Q 002506 519 LSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFF 598 (914)
Q Consensus 519 ~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll~ 598 (914)
-.+.-....+|+.+|++||..|++|+|++|.++-.....+|+..++..++.||.+|+.+++++.+|..|+.|..++++..
T Consensus 506 ~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvRdSelar 585 (1158)
T KOG2968|consen 506 FALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVRDSELAR 585 (1158)
T ss_pred hhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEeehhhhh
Confidence 34556778899999999999999999999999988777777776788999999999999999999999999999999999
Q ss_pred EcHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 002506 599 IESDKILSILRSDPAVEDFLWQQSAIALS 627 (914)
Q Consensus 599 I~~~~f~~ll~~~p~~~~~l~~~l~~~l~ 627 (914)
||..-|..+..++|.+..++.+-+++++.
T Consensus 586 iPe~l~~~ik~ryP~v~~rl~~ll~~~~~ 614 (1158)
T KOG2968|consen 586 IPEGLLNFIKLRYPQVVTRLIKLLAEKIL 614 (1158)
T ss_pred ccHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 99999999999999998888877777774
No 34
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.88 E-value=0.00025 Score=86.22 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 002506 21 VIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGI 100 (914)
Q Consensus 21 ~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~v 100 (914)
-..+..++++++++-+++ +.+|.|.+++++++|+++++ +.++++.+..++.|. -++-.+.|+.+|+.+....
T Consensus 215 e~~~~~~l~~vl~~a~l~-~~~Gls~~LGAFlaGl~l~~---s~~~~~l~~~i~pf~----~lll~lFFi~vGm~id~~~ 286 (601)
T PRK03659 215 EVFTAAALLLVLGSALFM-DALGLSMALGTFIAGVLLAE---SEYRHELEIAIEPFK----GLLLGLFFISVGMALNLGV 286 (601)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHhcC---CchHHHHHHHHHHHH----HHHHHHHHHHHhhhccHHH
Confidence 344556666677777888 78999999999999999986 334555555666664 3556999999999886432
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHh-hhcchhHHHHHHHhh
Q 002506 101 LGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILV-WSGLRGAVALSLSLS 170 (914)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~-w~GlRGavsLaLal~ 170 (914)
+ ...|..++++.+++++++++.+++...+ .+.+|++++.++ +-..||-+++.++-.
T Consensus 287 l---------~~~~~~il~~~~~~l~~K~~~~~~~~~~-----~g~~~~~al~~g~~L~~~Gef~~vl~~~ 343 (601)
T PRK03659 287 L---------YTHLLWVLISVVVLVAVKGLVLYLLARL-----YGLRSSERMQFAGVLSQGGEFAFVLFSA 343 (601)
T ss_pred H---------HHhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhccccHHHHHHHH
Confidence 2 2345555666677889999988755432 366888887665 457789888776553
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.66 E-value=0.0011 Score=80.95 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002506 20 TVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 99 (914)
Q Consensus 20 ~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~ 99 (914)
+-..+.+++++++++.+++ |.+|.|.+++++++|++++. +.++++.+..+..| .-++-.+.|+.+|+.+...
T Consensus 217 ~e~~~~~~l~lv~~~a~la-~~~Gls~~lGAFlAGl~l~~---~~~~~~le~~i~pf----~~lll~lFFi~vG~~id~~ 288 (621)
T PRK03562 217 REVFTAVALFLVFGFGLLM-EEVGLSMALGAFLAGVLLAS---SEYRHALESDIEPF----KGLLLGLFFIAVGMSIDFG 288 (621)
T ss_pred chHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHhcC---CccHHHHHHHHHHH----HHHHHHHHHHHhhhhccHH
Confidence 4445667778888888999 79999999999999999985 23344444444444 3456699999999987532
Q ss_pred hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcc-hhHHHHHHHh
Q 002506 100 ILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSL 169 (914)
Q Consensus 100 v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~Gl-RGavsLaLal 169 (914)
.+ ...|..++.+.++.++++++.+++...+ .+.+|+++..+++.=. +|-.++.++-
T Consensus 289 ~l---------~~~~~~il~~~~~~~~~K~~~~~~~~~~-----~g~~~~~a~~~gl~L~~~Gef~~vl~~ 345 (621)
T PRK03562 289 TL---------LENPLRILILLLGFLAIKIAMLWLLARP-----LGVPRKQRRWFAVLLGQGGEFAFVVFG 345 (621)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHhHHHHHHHHHhccccHHHHHHH
Confidence 21 1234444555566788899988755433 3568888888887443 6766665553
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.34 E-value=0.0009 Score=80.27 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=105.0
Q ss_pred CCChhhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCc
Q 002506 493 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 572 (914)
Q Consensus 493 ~~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~ 572 (914)
+|.+..+|..+..| ..| ..-++.+.+....+..|++|++.|++.+.+|++.+|..++...+.+|++.++..+.+|+.
T Consensus 90 ~~eil~~L~~i~~~-EkP--~fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~ 166 (1158)
T KOG2968|consen 90 QPEILYMLSAIRIL-EKP--VFLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGS 166 (1158)
T ss_pred chHHHHHHHHhHhh-ccc--eeeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCc
Confidence 44555566666555 211 122344677778888999999999999999999999999999999999999999999965
Q ss_pred cchh-hh---hcCCC---ceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 002506 573 LGLY-EV---LIGKP---YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 573 fGE~-~l---L~~~~---r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ 628 (914)
|--. ++ +.+.| +...++|.++|.+..+|.+.|......+|+-...+.+....++..
T Consensus 167 ~tSllSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 167 FTSLLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred hHhHHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 4333 33 45555 445688999999999999999999999999988888888777776
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.19 E-value=0.0042 Score=64.48 Aligned_cols=105 Identities=11% Similarity=0.232 Sum_probs=80.4
Q ss_pred HHHhccCEEEEecCCcee-ecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcce
Q 002506 515 EPLELSTKEIMKLSGVTL-YREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSV 593 (914)
Q Consensus 515 ~~L~~~~~~~~~~~Ge~I-~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~ 593 (914)
+.|....+...+.+|..+ +-.......+|+|.+|.|.+. .. ++ .++.+..+..+||-...+.+....+..+|.++
T Consensus 16 ~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~-d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 16 KCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-RE-EN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ec-CC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 345556667888899986 655555578999999999994 32 33 55667788899999887777777789999999
Q ss_pred EEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 002506 594 VLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 594 ~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ 628 (914)
|.++.||.++|.++++++. +|+.++..++.
T Consensus 92 c~~~~i~~~~~~~iie~~~-----LW~~~~~~l~~ 121 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-----LWRDAFYWLAW 121 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-----hHHHHHHHHHH
Confidence 9999999999999997554 45555554444
No 38
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.16 E-value=0.011 Score=74.46 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 002506 22 IEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGIL 101 (914)
Q Consensus 22 ~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~v~ 101 (914)
..+.+++++.+++.+++ |.+|.|.+++++++|+++.. + +-.....+.+=..+.-++--+-|+.+|+.+....+
T Consensus 272 ~~v~~il~~vl~~a~la-e~~Gl~~ilGAFlaGl~lp~-~-----~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l 344 (832)
T PLN03159 272 FYICLILTGVMISGFIT-DAIGTHSVFGAFVFGLVIPN-G-----PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI 344 (832)
T ss_pred chhHHHHHHHHHHHHHH-HHhCccHHHHHHHHhhccCC-c-----chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHh
Confidence 34556677777888899 79999999999999999864 1 11122233333344456667889999998764322
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhc-chhHHHHHHHhh
Q 002506 102 GNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSG-LRGAVALSLSLS 170 (914)
Q Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~G-lRGavsLaLal~ 170 (914)
. ....|..++++.++.+++.++..++... -++++|++.+.+++.= .||.+.+.++..
T Consensus 345 ~-------~~~~~~~~~~liv~a~~gK~~g~~l~a~-----~~g~~~~eal~lG~lm~~kG~~~Lii~~i 402 (832)
T PLN03159 345 Q-------GPATWGLLVLVIIMASAGKIMGTIIIAF-----FYTMPFREGITLGFLMNTKGLVEMIVLNV 402 (832)
T ss_pred c-------CchHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1 2234555555566667788877654332 2477999998877654 399988877653
No 39
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.91 E-value=0.02 Score=69.27 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=74.8
Q ss_pred HHHHHHH-HHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 002506 27 TLAVSYI-AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDK 105 (914)
Q Consensus 27 tl~~~y~-~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~v~~~~~ 105 (914)
.++++++ ++..+ |.+|.|.+++++++|++++.. ...++....... +..++-.+-|+.+|+.+....+
T Consensus 231 ~l~~~l~~a~~~~-~~lGls~~lGAflaGl~l~~~---~~~~~~~~~~~~----~~~~f~plFFv~~G~~~d~~~l---- 298 (558)
T PRK10669 231 VLALALGIAFGAV-ELFDVSFALGAFFAGMVLNES---ELSHRAAHDTLP----LRDAFAVLFFVSVGMLFDPMIL---- 298 (558)
T ss_pred HHHHHHHHHHHHH-HHcCccHHHHHHHHHHHHhCC---hhHHHHHHHHhh----HHHHHHHHHHHHhhhhcCHHHH----
Confidence 3444443 44456 789999999999999999751 122222221111 2345677899999998753211
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcc-hhHHHHHHHh
Q 002506 106 IFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSL 169 (914)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~Gl-RGavsLaLal 169 (914)
...+..++++.++.++++++.++....+ .+.+|++.+.++.+=- ||..++.++.
T Consensus 299 -----~~~~~~~~~~~~~~~v~K~~~~~~~~~~-----~g~~~~~a~~~gl~l~~~Gef~lii~~ 353 (558)
T PRK10669 299 -----IQQPLAVLATLAIIVFGKSLAAFFLVRL-----FGHSRRTALTIAASLAQIGEFAFILAG 353 (558)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHhcccchHHHHHH
Confidence 1223334445566788898887654433 3457888887776533 7777776554
No 40
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.77 E-value=0.046 Score=53.64 Aligned_cols=116 Identities=10% Similarity=0.058 Sum_probs=87.2
Q ss_pred CCCcccHHHHhcc-CEEEEecCCceeecCCCC-CCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhh-----hc
Q 002506 508 ELPPSVREPLELS-TKEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEV-----LI 580 (914)
Q Consensus 508 ~Ls~e~l~~L~~~-~~~~~~~~Ge~I~~eGe~-~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~l-----L~ 580 (914)
+.|..+.++|+.+ .+.....+|+.-.-||.. .|.+-++++|.++|+..+ ..+..+.|-+++.--+- -.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g-----~fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG-----RFLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC-----EeeEeecccccccChhhhccccCC
Confidence 4678888999998 566788899999989876 499999999999998754 22334445444432211 24
Q ss_pred CCCceeEEEEcceEEEEEEcHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 002506 581 GKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 581 ~~~r~atV~A~t~~~ll~I~~~~f~~ll~~~p~~~~~l~~~l~~~l~~ 628 (914)
+.....|++|.++|..+.-+++.+..++..+|-+..-+-.-++.-+++
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~ 136 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAE 136 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999997766555555544443
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.17 Score=58.53 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=88.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q 002506 18 NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAY-IANTLIFILSGVVI 96 (914)
Q Consensus 18 ~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~-~an~lIFillGl~i 96 (914)
++....+..++++++++=+++ |.+|+|-++..+.+|+.++.... . ++.+.+--+-+.+ +.-.+-|+.+|+.+
T Consensus 218 ~~~e~~~~~~l~i~l~~a~l~-e~~gls~ilGAFlaGl~ls~~~~---~---~~~l~~~i~~~~~~~fiplFFi~vG~~~ 290 (397)
T COG0475 218 ESSELFILFVLLLVLGAAYLA-ELLGLSMILGAFLAGLLLSESEY---R---KHELEEKIEPFGDGLFIPLFFISVGMSL 290 (397)
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHhChhHHHHHHHHHHHhccccc---c---hHHHHHHHHhHHhHHHHHHHHHHhhHHc
Confidence 567778888999999999999 79999999999999999976321 1 1233444444555 77789999999998
Q ss_pred hhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcchhHHHHHHH
Q 002506 97 AEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLS 168 (914)
Q Consensus 97 ~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~GlRGavsLaLa 168 (914)
....+ ...|..++++.++.++.+.+..+.....+ +.+++.+...+++. ++...++++
T Consensus 291 dl~~l---------~~~~~~~l~~~~~~i~~K~~~~~~~~~~~-----g~~~~~~~~~g~~~-~~~ge~~~v 347 (397)
T COG0475 291 DLGVL---------LENLLLILLLVALAILGKILGAYLAARLL-----GFSKRLALGIGLLL-RQGGEFAFV 347 (397)
T ss_pred CHHHH---------hccHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHhhh-hhhhHHHHH
Confidence 75433 23344467777788888888876544332 25566666655543 444333333
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.21 E-value=0.006 Score=70.92 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=85.3
Q ss_pred hhHHhcCCCCCCCCcccHHHHhccCEEEEe-cCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccch
Q 002506 497 SDLISAHPLLRELPPSVREPLELSTKEIMK-LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 575 (914)
Q Consensus 497 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~-~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE 575 (914)
.++..+.|-|.+++-....+|+..+...++ .+|.+|...|+.-+.|++|++|.|++...+ |+. ..+.-|+-||.
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd--Gk~---e~l~mGnSFG~ 354 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD--GKR---EELKMGNSFGA 354 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC--Cce---EEeecccccCC
Confidence 367889999999999999999887765444 499999999999999999999999998765 544 35667999997
Q ss_pred hhhhcCCCceeEEEE-cceEEEEEEcHHHHHHHHhh
Q 002506 576 YEVLIGKPYMSDMVT-DSVVLCFFIESDKILSILRS 610 (914)
Q Consensus 576 ~~lL~~~~r~atV~A-~t~~~ll~I~~~~f~~ll~~ 610 (914)
.--....-....+++ ..+|+..+|...+|-+++..
T Consensus 355 ~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 355 EPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 654433333333333 46899999999999998754
No 43
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.61 E-value=0.048 Score=59.66 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002506 19 DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVI 96 (914)
Q Consensus 19 d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i 96 (914)
+....+.+++.++++.+++| |.+|+|++++++++|+++++.. . .+...+.-+.+.-+..-+-|+.+|+.+
T Consensus 203 ~~~~~~~~~l~~~~~~~~la-~~~g~s~~lgaf~aGl~~~~~~------~-~~~l~~~l~~~~~~f~plFF~~~G~~~ 272 (273)
T TIGR00932 203 PSELFTAGSLLLMFGSAYFA-DLLGLSMALGAFLAGVVLSESE------Y-RHKLESDLEPIGGVLLPLFFISVGMSV 272 (273)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHcCCc------h-HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence 45677889999999999999 7999999999999999998732 1 122444445555777778888888754
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.89 E-value=0.47 Score=55.88 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=74.5
Q ss_pred hhHHhcCCCCCCCCcccHHHHhccCEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchh
Q 002506 497 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 576 (914)
Q Consensus 497 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~ 576 (914)
.+.|.+...|++|-...++.++...+...++...++|+.|+.+.+||++++|.|-+... .+-|-.+||--
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~gq----------i~mp~~~fgkr 105 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEGQ----------IYMPYGCFGKR 105 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeecc----------eecCccccccc
Confidence 45688889999999999999999999999999999999999999999999999987531 23344466653
Q ss_pred hhhcCCCceeEEEEcceEEEEEE
Q 002506 577 EVLIGKPYMSDMVTDSVVLCFFI 599 (914)
Q Consensus 577 ~lL~~~~r~atV~A~t~~~ll~I 599 (914)
+|..|.+++-....++.+++
T Consensus 106 ---~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 106 ---TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred ---cccccccceeeecccceeee
Confidence 46678888888888888887
No 45
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=85.03 E-value=9 Score=47.80 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002506 24 IALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 99 (914)
Q Consensus 24 i~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~ 99 (914)
-.+.+++++++.+++ |.+.+|..+..+++|++++..+-..+.|......+..+-.++.++-.++-+-.|+.++..
T Consensus 19 G~~lll~~l~s~~lk-eRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 19 GIFSSIFSLVSLFVK-EKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 356778889999999 789999999999999999987655666654322233333366666666666677777643
No 46
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=73.25 E-value=1e+02 Score=35.97 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhHhhcccchhHHHHHHHHHHhhccccc-CC----hh-hHHHHHHHHHHHHHHH-HHHHHHHHhhhhhh-h
Q 002506 28 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTA-FK----GE-SQQSLHYFWEMVAYIA-NTLIFILSGVVIAE-G 99 (914)
Q Consensus 28 l~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~-~s----~~-~~~~~~~fw~~l~~~a-n~lIFillGl~i~~-~ 99 (914)
+++..+.++.. +..|+...+|-|++|+++-...+.. .. ++ .+...|.+-..+.++. =.+.|.-.|+.+.. .
T Consensus 212 ~ilg~~lW~~~-~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~ 290 (423)
T PRK14853 212 LPLGVATWILV-HESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLS 290 (423)
T ss_pred HHHHHHHHHHH-HHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCch
Confidence 33344666666 5789999999999999985421111 00 01 1222222222232222 33336777887642 1
Q ss_pred hcccccccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCChhhhHHHhhhcchhHHHHHHHhhhh
Q 002506 100 ILGNDKIFQNHGNSWG--YLILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSVK 172 (914)
Q Consensus 100 v~~~~~~~~~~~~~~~--~~l~~~~~i~v~R~~~v~~~~p~l~~~~-----~~~~~~~~~vl~w~GlRGavsLaLal~v~ 172 (914)
.+ ...+. ..+.+.+.+++..++.|+.+..+.-+++ .+.+|+..+-+ |+=+++++.+++.+.
T Consensus 291 ~~---------~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv---~~L~GIGFTmSlFI~ 358 (423)
T PRK14853 291 GL---------GAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV---ALLAGIGFTVSLLIG 358 (423)
T ss_pred hH---------HHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHH
Confidence 11 01111 3445567778889998888776655543 34566655443 334556666666553
No 47
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=69.36 E-value=82 Score=35.27 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhH---hhcccchhHHHHHHHHHHhh
Q 002506 24 IALTLAVSYIAFFTAQ---EGADVSGVLTVMTLGMFYAA 59 (914)
Q Consensus 24 i~ltl~~~y~~y~iAE---e~l~~SGvlAvv~~Gl~~~~ 59 (914)
+.++++++.++|++++ ...+++.++=.+..|+.++|
T Consensus 3 l~l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n 41 (305)
T PF03601_consen 3 LLLCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGN 41 (305)
T ss_pred HHHHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhh
Confidence 4678899999999994 35689998989999999997
No 48
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=68.72 E-value=79 Score=36.29 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=69.3
Q ss_pred hhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHH-H-HHHHHHHHHHhhhhhhhhcccccccccccchHHHH
Q 002506 40 EGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVA-Y-IANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYL 117 (914)
Q Consensus 40 e~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~-~-~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~ 117 (914)
...|+...+|.|.+|+++-...+.. ++-.+.++++++-.+ + ++=.+.|.-.|+.+....++ ...++. .
T Consensus 213 ~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~-------~~~~~v-~ 282 (373)
T TIGR00773 213 LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLN-------GLTSML-P 282 (373)
T ss_pred HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcch-------hhcChH-H
Confidence 3578888999999999987632221 122234444444443 3 22333477788877421111 122333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCChhhhHHHhhhcchhHHHHHHHhhh
Q 002506 118 ILLYIFVQVSRLFVVGTLYPVLRNFG-----YGLEWKEAIILVWSGLRGAVALSLSLSV 171 (914)
Q Consensus 118 l~~~~~i~v~R~~~v~~~~p~l~~~~-----~~~~~~~~~vl~w~GlRGavsLaLal~v 171 (914)
+.+.+.+++..++.++.+..+.-+++ .+.+|++.+-++ +=++++..+++.+
T Consensus 283 lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~---~L~GIGFTmSlfI 338 (373)
T TIGR00773 283 LGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVG---VLCGIGFTMSIFI 338 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHH
Confidence 66677888999999988877766654 345666554433 3345666666544
No 49
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=54.37 E-value=1.9e+02 Score=35.50 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002506 19 DTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 98 (914)
Q Consensus 19 d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~ 98 (914)
+-...+.+.++.+.++-.++ ..++.+.+++=+++|+++|..+-..+++. .....++.+.-.++.+++|+.+..
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~-~rl~~p~ilg~ilaGillGP~~lg~i~~~------~~i~~laelGvv~LLF~iGLel~~ 77 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLA-QRLGIGAVLGYLLAGIAIGPWGLGFISDV------DEILHFSELGVVFLMFIIGLELNP 77 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHHhccccccCCCcH------HHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34556777788888888888 68999999999999999987553333321 113356667777778888988754
No 50
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=54.22 E-value=3.1e+02 Score=31.12 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhHh----hcccchhHHHHHHHHHHhhc
Q 002506 23 EIALTLAVSYIAFFTAQE----GADVSGVLTVMTLGMFYAAV 60 (914)
Q Consensus 23 ei~ltl~~~y~~y~iAEe----~l~~SGvlAvv~~Gl~~~~~ 60 (914)
-+.+++.++++++++++. ..++|.++=.+..|++++|.
T Consensus 6 G~~l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~ 47 (335)
T TIGR00698 6 GLLQMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNT 47 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhcc
Confidence 356778889999999842 14788888889999999884
No 51
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=53.68 E-value=1.1e+02 Score=32.05 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHh
Q 002506 24 IALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYA 58 (914)
Q Consensus 24 i~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~ 58 (914)
.+++++..+..++-. ..-..+|++++++.+++.+
T Consensus 91 ~if~~~~gi~~~f~~-~~~~~~gi~tli~~~i~~G 124 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSP-KNSNQYGIITLILVSIVGG 124 (206)
T ss_pred HHHHHHHHHHHHHhh-cccccccHHHHHHHHHHHH
Confidence 344555555554444 2333448887765555433
No 52
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=52.53 E-value=1.9e+02 Score=35.73 Aligned_cols=72 Identities=14% Similarity=0.116 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002506 20 TVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 98 (914)
Q Consensus 20 ~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~ 98 (914)
-...+++.++++.++-.++ ..++.+.|++=+++|+++|..+-..++. . ...+.++.+.-.++-+++|+.+..
T Consensus 6 ~l~~~~~~l~~a~i~~~l~-~rl~lp~vlgyilaGillGP~~lg~i~~-~-----~~i~~laelGvv~LlF~iGLEl~~ 77 (621)
T PRK03562 6 TLIQALIYLGAAVLIVPIA-VRLGLGSVLGYLIAGCIIGPWGLRLVTD-V-----ESILHFAEFGVVLMLFVIGLELDP 77 (621)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCChHHHHHHHHHHhCcccccCCCC-H-----HHHHHHHHHHHHHHHHHHHhCcCH
Confidence 4567788888999999999 7899999999999999998754333322 1 123456666666777888988754
No 53
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=50.59 E-value=2.3e+02 Score=36.44 Aligned_cols=81 Identities=11% Similarity=0.158 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 002506 20 TVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQ----SLHYFWEMVAYIANTLIFILSGVV 95 (914)
Q Consensus 20 ~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~----~~~~fw~~l~~~an~lIFillGl~ 95 (914)
-..++.+.++++.+.++++ .-++...|++=+.+|+++|...-..+..-... .....-+.++.+.-.++.+++|+.
T Consensus 44 ~llql~lil~~a~l~~~ll-~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 44 FILQLTLVVVTTRLLVFIL-KPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457788888999999999 78999999999999999987543222110000 112346777777778888899998
Q ss_pred hhhhhc
Q 002506 96 IAEGIL 101 (914)
Q Consensus 96 i~~~v~ 101 (914)
+....+
T Consensus 123 ~Dl~~l 128 (832)
T PLN03159 123 MDISVI 128 (832)
T ss_pred CcHHHH
Confidence 875443
No 54
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=45.43 E-value=2.4e+02 Score=31.46 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHHH-HHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002506 27 TLAVSYI-AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 98 (914)
Q Consensus 27 tl~~~y~-~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~ 98 (914)
.+.++.. +|..+ +.+|+|=-+..+++||+++.. ..|++..+..-..- ...-.+.|+=+|+....
T Consensus 231 vla~ALgVa~Ga~-~LfgvsfaLGAffaGMvL~es---elshraa~~slpLr----daFaVlFFvsVGmlf~P 295 (408)
T COG4651 231 VLAIALGVAFGAA-ELFGVSFALGAFFAGMVLAES---ELSHRAAEDSLPLR----DAFAVLFFVSVGMLFDP 295 (408)
T ss_pred HHHHHHHHhhccc-eeeccchhHHHHHHHHHhcch---hhhHHHHHhccCHH----HHHHHHHHHHhhhhcCc
Confidence 3333333 34445 799999999999999999763 23333333222222 23345678888987754
No 55
>PRK04972 putative transporter; Provisional
Probab=43.57 E-value=2e+02 Score=34.99 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=19.0
Q ss_pred hhhhhhhhhhhhhhccHHHHHhhhccc
Q 002506 192 FTGGIVFLTLIVNGSTTQYILHLLDMD 218 (914)
Q Consensus 192 ~t~gvVllTlli~G~tl~~llr~L~l~ 218 (914)
+++.+.++++++++.++|.+.| .++.
T Consensus 165 ~~y~~g~i~~i~~~~~~p~l~r-idl~ 190 (558)
T PRK04972 165 LTYLIGLVSLIVGARYLPKLQH-QDLQ 190 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHhC-CCHH
Confidence 4455677788999999988877 4543
No 56
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=42.02 E-value=1.5e+02 Score=35.76 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHH
Q 002506 404 SGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSD 480 (914)
Q Consensus 404 ~~v~~~ii~E~~~~~~~A~~~L~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gllde~E~~~L~~~l~~~ 480 (914)
+++.+.+.+|.+.+.++++...+.-..+. ....-..+.+.+.+++.+++.+.++.++|.+|++-+.++.++++-+
T Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~~ 519 (525)
T TIGR00831 445 EPVARELLPELDARIEELRADGEEKIRSG--MGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDLK 519 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHH
Confidence 34555566665555544433322111111 0100113457788999999999999999999999776666666443
No 57
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=40.96 E-value=79 Score=26.19 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=39.2
Q ss_pred EEecCCceeecCCCCCC-eEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 002506 524 IMKLSGVTLYREGSKPS-GIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 599 (914)
Q Consensus 524 ~~~~~Ge~I~~eGe~~~-~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll~I 599 (914)
..+.||+..-..-.... .+++|++|.+.+... |+. ..+.+|+.+=. =.+.+........+++.++.|
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GER---VELKPGDAIYI---PPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TEE---EEEETTEEEEE---ETTSEEEEEEESSSEEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cEE---eEccCCEEEEE---CCCCeEEEEECCCCCEEEEEE
Confidence 45677776555555555 899999999999843 222 46778875411 123344443444445555543
No 58
>PRK10263 DNA translocase FtsK; Provisional
Probab=39.72 E-value=2.3e+02 Score=37.81 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=6.5
Q ss_pred hhhcchhHHH
Q 002506 155 VWSGLRGAVA 164 (914)
Q Consensus 155 ~w~GlRGavs 164 (914)
..||+=|.+-
T Consensus 141 ~gGGIIG~lL 150 (1355)
T PRK10263 141 ASGGVIGSLL 150 (1355)
T ss_pred cccchHHHHH
Confidence 5677777643
No 59
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=39.41 E-value=1e+02 Score=35.79 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002506 69 SQQSLHYFWEMVAYIANTLIFILSGVV 95 (914)
Q Consensus 69 ~~~~~~~fw~~l~~~an~lIFillGl~ 95 (914)
+++.+..=|..+..+..+++|+.+|++
T Consensus 535 s~~il~~~w~a~~~Lia~~L~L~iGli 561 (652)
T KOG2290|consen 535 SWQILERPWRAFFHLIATLLVLCIGLI 561 (652)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 355666788999999999999999985
No 60
>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []. This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.
Probab=39.00 E-value=57 Score=27.79 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhc--c-----------cchhHHHHHHHHHHhhc
Q 002506 22 IEIALTLAVSYIAFFTAQEGA--D-----------VSGVLTVMTLGMFYAAV 60 (914)
Q Consensus 22 ~ei~ltl~~~y~~y~iAEe~l--~-----------~SGvlAvv~~Gl~~~~~ 60 (914)
.-..+.+.+|.++|+.....+ + .||++||+++-++++.|
T Consensus 10 ~fs~~M~~lPl~~ff~~~~~~~~~~~~~~~~~~~~~sgi~Avi~vnvVl~~Y 61 (66)
T PF09446_consen 10 FFSVLMFTLPLGTFFGFKYFLFDGFFGLSPSDNTIYSGIAAVIVVNVVLASY 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 345677889999999985433 1 68899998888887765
No 61
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=38.87 E-value=86 Score=30.70 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=36.9
Q ss_pred EEEEecCCceeecCCCC-CCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCcc
Q 002506 522 KEIMKLSGVTLYREGSK-PSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 573 (914)
Q Consensus 522 ~~~~~~~Ge~I~~eGe~-~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~f 573 (914)
....+.+|...-..-.. ...+++|++|...+...+.++++.....+.+||++
T Consensus 33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~ 85 (146)
T smart00835 33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF 85 (146)
T ss_pred EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence 34556677776544332 57899999999999877654445455678999876
No 62
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.02 E-value=3.5e+02 Score=32.82 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002506 23 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG 99 (914)
Q Consensus 23 ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~ 99 (914)
.+.+.++++++...++ .-++.+-+++=+.+|+++|..+-..+++. .+-+.++.+.-.++.+++|+.+...
T Consensus 10 ~~~~~l~~a~~~~~l~-~rl~~P~ivg~IlaGillGp~~lg~~~~~------~~~~~la~lGli~llF~~Gle~d~~ 79 (558)
T PRK10669 10 TIVGGLVLAFILGMLA-NRLRISPLVGYLLAGVLAGPFTPGFVADT------KLAPELAELGVILLMFGVGLHFSLK 79 (558)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHhhCccccccccch------HHHHHHHHHHHHHHHHHhHhcCCHH
Confidence 3466788888889999 78999999999999999987654333321 3445678888888889999988643
No 63
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=36.64 E-value=1.1e+02 Score=24.54 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 002506 300 LNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDL 334 (914)
Q Consensus 300 l~~~r~~~~~l~~~g~is~~~~~~L~~~id~~ld~ 334 (914)
-.+..+++-++..+|.|+++.+..++..-|..+..
T Consensus 12 G~aL~dtLDeli~~~~I~p~La~kVL~~FDksi~~ 46 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKITPQLAMKVLEQFDKSINE 46 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999988877654
No 64
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=35.48 E-value=5e+02 Score=28.88 Aligned_cols=137 Identities=15% Similarity=0.057 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHH
Q 002506 48 LTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVS 127 (914)
Q Consensus 48 lAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~ 127 (914)
+-.+++|+.++..+- .++ ..+.+.-++++..+.-+.-+.+|+.+...- ...+|.......++=++.
T Consensus 185 iia~i~Gl~~~~~~i-~lP----~~l~~~l~~lg~~~~plaLl~lG~~l~~~~---------~~~~~~~~~~~~~~klil 250 (321)
T TIGR00946 185 LWAPLLSVILSLVGF-KMP----GLILKSISILSGATTPMALFSLGLALSPRK---------IKLGVRDAILALIVRFLV 250 (321)
T ss_pred hHHHHHHHHHHHHhh-cCc----HHHHHHHHHHHHHHHHHHHHHHHHhhChhh---------hccChHHHHHHHHHHHHH
Confidence 444566666655432 112 345667777777777788888887764211 112332222222222222
Q ss_pred HHHHHHHHHHHHhhhCCCCChhhhHHHhhhcchhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhcc
Q 002506 128 RLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGST 207 (914)
Q Consensus 128 R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~GlRGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~t 207 (914)
=++.++.+ ...++-+..++...++..+-+-++.+..+|-....+ .-.+..++++|.++.-.|
T Consensus 251 ~P~i~~~~---~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~---------------~~~aa~~v~~sT~ls~~t 312 (321)
T TIGR00946 251 QPAVMAGI---SKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVD---------------VELASTAVTLSTVLSLIS 312 (321)
T ss_pred HHHHHHHH---HHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCC---------------HHHHHHHHHHHHHHHHHH
Confidence 22222222 222344455677777777777887777777533211 015667788888888888
Q ss_pred HHHHHhhhc
Q 002506 208 TQYILHLLD 216 (914)
Q Consensus 208 l~~llr~L~ 216 (914)
+|.++-.+|
T Consensus 313 lp~~~~l~~ 321 (321)
T TIGR00946 313 LPLFIILLG 321 (321)
T ss_pred HHHHHHHhC
Confidence 887766543
No 65
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=34.96 E-value=1.1e+02 Score=32.50 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=44.1
Q ss_pred CEEEEecCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchh----hhhcCCC---------ceeE
Q 002506 521 TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY----EVLIGKP---------YMSD 587 (914)
Q Consensus 521 ~~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~----~lL~~~~---------r~at 587 (914)
++.....+|+..-.+-..-+.+.+++.|.++++.. |+.||++ +.+.+.| ..++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~--------------g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~ 96 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAH--------------GSTFGEIGTRMSVFERKPPDSVYVPAGSAFS 96 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeec--------------cchHhhcccccccccCCCCCeEEecCCceEE
Confidence 34455669999887777778899999999998753 3333333 3444433 5678
Q ss_pred EEEcceEEEEE
Q 002506 588 MVTDSVVLCFF 598 (914)
Q Consensus 588 V~A~t~~~ll~ 598 (914)
+.|.+++++..
T Consensus 97 vtA~t~~~vAv 107 (270)
T COG3718 97 VTATTDLEVAV 107 (270)
T ss_pred EEeecceEEEE
Confidence 88988876654
No 66
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=33.64 E-value=5e+02 Score=28.39 Aligned_cols=129 Identities=19% Similarity=0.114 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcc--
Q 002506 82 YIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-- 159 (914)
Q Consensus 82 ~~an~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~Gl-- 159 (914)
.++-++||...|+..+.-+=+-.-+| +...+..-.+...+.+.++|++.. -|--.+|.++.---|.++++.-|.
T Consensus 25 Si~~tvi~A~~GIi~GL~~gS~~IiF-DGvYSl~da~mtllsL~vsrli~~---~p~~~RF~~GfwhlEplvL~ing~ll 100 (314)
T COG3965 25 SIAGTVIFAAFGIIWGLLSGSMSIIF-DGVYSLIDAGMTLLSLLVSRLIAK---DPRDARFPYGFWHLEPLVLAINGTLL 100 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcceEEEe-ccHHHHHHHHHHHHHHHHHHHhcc---CCCccccCcchhhhhhhHhhhccHHH
Confidence 46677788777776653111111123 233444556677788888888876 343336666776678888876663
Q ss_pred hhHHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcH
Q 002506 160 RGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSA 222 (914)
Q Consensus 160 RGavsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~ 222 (914)
-+.+.+|+.-++..-.+| .|+.-.-++....++|..+- .++-+.++.++-.-.++
T Consensus 101 ~ll~lyAlinAl~~l~dG-------GR~v~~~~ai~yt~~s~~~C-a~~~~~~~r~nrr~~s~ 155 (314)
T COG3965 101 ALLCLYALINALGSLLDG-------GREVEPGHAIAYTLVSVTGC-AAIAWKLRRLNRRLKSP 155 (314)
T ss_pred HHHHHHHHHHHHHHHhcC-------CccccccHHHHHHHHHHHHH-HHHHHHHHhhhccCCCc
Confidence 333344444444332222 12222223333334443332 23556666666555553
No 67
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=33.55 E-value=6.2e+02 Score=29.70 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.1
Q ss_pred HHHhhhcchhHHH
Q 002506 152 IILVWSGLRGAVA 164 (914)
Q Consensus 152 ~vl~w~GlRGavs 164 (914)
.++||.|++|...
T Consensus 234 ~llWffGIHG~~v 246 (423)
T TIGR00359 234 MLLWFCGLHGANI 246 (423)
T ss_pred HHHHHcccCcHHH
Confidence 4789999999643
No 68
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=33.55 E-value=6.2e+02 Score=29.70 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.1
Q ss_pred HHHhhhcchhHHH
Q 002506 152 IILVWSGLRGAVA 164 (914)
Q Consensus 152 ~vl~w~GlRGavs 164 (914)
.++||.|++|...
T Consensus 234 ~llWffGIHG~~v 246 (423)
T TIGR00410 234 MLLWFCGLHGANI 246 (423)
T ss_pred HHHHHcccCcHHH
Confidence 4789999999643
No 69
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=33.49 E-value=2.3e+02 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Q 002506 291 NLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLAS 336 (914)
Q Consensus 291 ~~~~~r~r~l~~~r~~~~~l~~~g~is~~~~~~L~~~id~~ld~~~ 336 (914)
.+.++...++...++.+-...+.|.|+++-+......+|...+...
T Consensus 8 el~~l~~qm~e~kK~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~ 53 (59)
T PF10925_consen 8 ELKALYKQMLELKKQIIDKYVEAGVITQEQADAIKKHIDQRQEYMQ 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999999999998877554
No 70
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=33.31 E-value=3.5e+02 Score=31.07 Aligned_cols=36 Identities=8% Similarity=0.148 Sum_probs=27.8
Q ss_pred cccCChhhHHHH---HHHHHHHHHHHHHHHHHHHhhhhh
Q 002506 62 RTAFKGESQQSL---HYFWEMVAYIANTLIFILSGVVIA 97 (914)
Q Consensus 62 ~~~~s~~~~~~~---~~fw~~l~~~an~lIFillGl~i~ 97 (914)
...++|+.-... ...|..++.+.-+++|.++++..-
T Consensus 77 ssq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i 115 (371)
T PF10011_consen 77 SSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAI 115 (371)
T ss_pred hcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHc
Confidence 356778754333 478999999999999999998653
No 71
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=31.87 E-value=69 Score=28.37 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=33.2
Q ss_pred hhcCHHHHHHHHHhccccccccCCcEEEecCC---EEEEEEeceEEeec
Q 002506 636 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 681 (914)
Q Consensus 636 e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~~~---~~~ILl~G~V~~~~ 681 (914)
..++..+++.+. +......|.+|+.+..+++ .+++|++|.++...
T Consensus 3 ~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~ 50 (115)
T cd00038 3 SGLDDEELEELA-DALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYK 50 (115)
T ss_pred ccCCHHHHHHHH-hhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEE
Confidence 345666666665 4567778999998876654 78999999988743
No 72
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=31.65 E-value=4.8e+02 Score=29.76 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 002506 76 FWEMVAYIANTLIFILSGVVIA 97 (914)
Q Consensus 76 fw~~l~~~an~lIFillGl~i~ 97 (914)
....+.+++-+++...+|-.+.
T Consensus 263 ~~~~v~~~~~a~l~~~~G~iid 284 (344)
T PF04123_consen 263 LYGSVPWLALAALIASLGKIID 284 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444454443
No 73
>PRK12438 hypothetical protein; Provisional
Probab=31.63 E-value=1.3e+03 Score=30.19 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=26.2
Q ss_pred ehhhhhhhhhhhhhhhhccHHHHHhhhcccCCcHHH
Q 002506 189 FVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATK 224 (914)
Q Consensus 189 i~~~t~gvVllTlli~G~tl~~llr~L~l~~~~~~~ 224 (914)
+..+..++.+++.++-|...|+++..+-+......+
T Consensus 285 lp~i~~~llv~~~iv~g~i~P~~vQ~f~V~PNe~~~ 320 (991)
T PRK12438 285 IPAMAAALLVLSAILVGGLWPLLMEQFSVRPNAADV 320 (991)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhheeEEECcchhhh
Confidence 344556677777788888999999999887655443
No 74
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=31.21 E-value=4e+02 Score=32.11 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhHhhcccch----------hHHHHHHHHHHhh
Q 002506 26 LTLAVSYIAFFTAQEGADVSG----------VLTVMTLGMFYAA 59 (914)
Q Consensus 26 ltl~~~y~~y~iAEe~l~~SG----------vlAvv~~Gl~~~~ 59 (914)
+.-.++..--.+.|-.+|.-| ++||++|||+++.
T Consensus 361 lgG~v~l~~M~LGevifGGvG~Gl~~ml~~~ilaVFiaGLMVGR 404 (563)
T TIGR00680 361 LGGMVPLSDMFLGEVIWGGQGTGLAGLFVFLILAVFIAGLMVGR 404 (563)
T ss_pred hhhHHHHHHHHHhCcCcCCcchhHHHHHHHHHHHHHhccccccC
Confidence 444455666667655566554 7899999999876
No 75
>COG4129 Predicted membrane protein [Function unknown]
Probab=30.93 E-value=1.7e+02 Score=33.17 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHH
Q 002506 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMV 80 (914)
Q Consensus 1 iGi~~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l 80 (914)
+|.++|.+.+..+-..+.+......+++++...+=+.. -.-++--..++++.+++++..+...+-.. |...--+=-.+
T Consensus 62 ~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~-~~~~g~~~~~~~~~~ii~~~~~~~~~~~~-r~l~~~vG~~~ 139 (332)
T COG4129 62 LGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLL-KLENGVVPITVGVLHILVAAMIPLFLIFN-RFLLVFVGVGV 139 (332)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHcccchhHHHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 002506 81 AYIANTLIF 89 (914)
Q Consensus 81 ~~~an~lIF 89 (914)
+++.|.++|
T Consensus 140 a~lvn~~~~ 148 (332)
T COG4129 140 AFLVNLVMP 148 (332)
T ss_pred HHHHhhhcC
No 76
>COG3671 Predicted membrane protein [Function unknown]
Probab=30.83 E-value=3.6e+02 Score=25.78 Aligned_cols=61 Identities=23% Similarity=0.470 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCC----hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002506 28 LAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFK----GESQQSLHYFWEMVAYIANTLIFILSGV 94 (914)
Q Consensus 28 l~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s----~~~~~~~~~fw~~l~~~an~lIFillGl 94 (914)
.+..|+.|.+. - +.|+++.| |++++...+..-. ...+-..+.||-.+-+..-+++|.++|+
T Consensus 24 ~~vvY~Ly~~G-~---v~git~lv--gvi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg~Llt~lgi 88 (125)
T COG3671 24 PIVVYILYLLG-A---VTGITPLV--GVIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIGLLLTFLGI 88 (125)
T ss_pred hHHHHHHHHHH-H---HHHHHHHH--HHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766 2 34555544 5666655433211 1233455678877777777777776665
No 77
>PF12476 DUF3696: Protein of unknown function (DUF3696); InterPro: IPR022532 This domain is found in bacteria and archaea, and is approximately 50 amino acids in length.
Probab=30.71 E-value=22 Score=28.60 Aligned_cols=15 Identities=47% Similarity=1.125 Sum_probs=13.5
Q ss_pred ccccCCCCCchhhhh
Q 002506 765 REHGNLMSWPEHFYK 779 (914)
Q Consensus 765 ~~~~~~~~~~~~~~~ 779 (914)
-++|.|..||+.|+-
T Consensus 28 d~~G~l~~WP~GFFD 42 (52)
T PF12476_consen 28 DEDGRLSNWPEGFFD 42 (52)
T ss_pred CCCCCCccCCCchhh
Confidence 589999999999985
No 78
>PRK13666 hypothetical protein; Provisional
Probab=30.54 E-value=2.4e+02 Score=25.63 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=40.2
Q ss_pred HhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhh
Q 002506 430 VNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLL 485 (914)
Q Consensus 430 ~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gllde~E~~~L~~~l~~~lk~L~ 485 (914)
.+.|-|.+.+-|.--. ..+.+..-.+-|++++++...+...+++++..|.
T Consensus 37 ~qCPlyEEVlDTQmfG------lSreVdFAvrlgli~~~~Gk~ll~~LE~~Ls~L~ 86 (92)
T PRK13666 37 PQCPLYEEVLDTQMFG------LSREVDFAVRLGLIDEEEGKQLLSRLERELSALH 86 (92)
T ss_pred ccCchHHHHHHHHHhh------hHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 5788888888886544 3355667778999999999999999999998764
No 79
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=28.80 E-value=3.7e+02 Score=29.95 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=35.1
Q ss_pred hcccchhHHHHHHHHHHhhcccccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002506 41 GADVSGVLTVMTLGMFYAAVARTAFKG---ESQQSLHYFWEMVAYIANTLIFILSGVVIA 97 (914)
Q Consensus 41 ~l~~SGvlAvv~~Gl~~~~~~~~~~s~---~~~~~~~~fw~~l~~~an~lIFillGl~i~ 97 (914)
.++.++.+-|-+.|++.+-.+-..+.. +....-..++..++..+.++.=+..|+.+.
T Consensus 121 ~i~~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~ 180 (296)
T COG1230 121 PIHYSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSVGVIIAAIVIR 180 (296)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777887776543222211 122223467778888888887777777764
No 80
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.00 E-value=1.8e+02 Score=30.89 Aligned_cols=64 Identities=20% Similarity=0.369 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 002506 25 ALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFIL-SGVVI 96 (914)
Q Consensus 25 ~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFil-lGl~i 96 (914)
+..++++|+.|.+. .+.+|+++..+-.-.+..+.+ ..-...+.||..+=|++-++=+++ +|+.+
T Consensus 154 i~aml~Vf~LF~lv--mt~g~d~m~fl~v~~ly~~ia------~~ik~se~~~~~lwyi~Y~vPY~~~ig~~i 218 (230)
T PF03904_consen 154 IGAMLFVFMLFALV--MTIGSDFMDFLHVDHLYKAIA------SKIKASESFWTYLWYIAYLVPYIFAIGLFI 218 (230)
T ss_pred HHHHHHHHHHHHHH--HHhcccchhhhhHHHHHHHHH------HHHhhhHhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556666667666 566777776654444444322 112234668988888888888777 66654
No 81
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=27.85 E-value=1.5e+02 Score=29.37 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 002506 290 TNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSV 328 (914)
Q Consensus 290 ~~~~~~r~r~l~~~r~~~~~l~~~g~is~~~~~~L~~~i 328 (914)
+.-++....-+.++|..+.++.++|.|+..+++.|...+
T Consensus 89 ~p~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~a 127 (150)
T COG2147 89 MPSKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYRMA 127 (150)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 444667777788999999999999999999999986544
No 82
>PRK05326 potassium/proton antiporter; Reviewed
Probab=27.74 E-value=4.6e+02 Score=31.89 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002506 21 VIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAE 98 (914)
Q Consensus 21 ~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~ 98 (914)
.....+.+++++++..++ .-++...++.-+.+|+.++..+-..+.... ....+.++.++-.++.+..|+.+..
T Consensus 8 ll~~~~ll~l~~~~~~l~-~r~~~P~ll~~il~GillGp~~lg~i~~~~----~~~~~~i~~l~L~~iLF~~Gl~~~~ 80 (562)
T PRK05326 8 LLIGALLLLLSILASRLS-SRLGIPSLLLFLAIGMLAGEDGLGGIQFDN----YPLAYLVGNLALAVILFDGGLRTRW 80 (562)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhCccccCCcccCc----HHHHHHHHHHHHHHHHHcCccCCCH
Confidence 445677788888888999 789999999999999999875533222111 1344566777777777777877654
No 83
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=27.06 E-value=1.9e+02 Score=29.14 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=40.9
Q ss_pred eeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEEcHH
Q 002506 531 TLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESD 602 (914)
Q Consensus 531 ~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll~I~~~ 602 (914)
..++..+ .+.+|++++|.+.+...+.++ .. ...+++|++|=.-. |.+ .+-++..++.++.|.+.
T Consensus 41 ~d~H~~~-tdE~FyqleG~~~l~v~d~g~-~~-~v~L~eGd~flvP~---gvp--HsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 41 TDFHDDP-GEEFFYQLKGEMYLKVTEEGK-RE-DVPIREGDIFLLPP---HVP--HSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccccCC-CceEEEEEcceEEEEEEcCCc-EE-EEEECCCCEEEeCC---CCC--cccccCCCcEEEEEEeC
Confidence 4466644 799999999999998666433 22 35788998772222 222 23334567777777654
No 84
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=26.85 E-value=7.9e+02 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=38.2
Q ss_pred HHHHHHHhhhhcccCCCCcccccccceehhhhhhhhhhhhhhhhccHHHHHhhhcccCC
Q 002506 162 AVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKL 220 (914)
Q Consensus 162 avsLaLal~v~~~~~~~~~~~~~~~~~i~~~t~gvVllTlli~G~tl~~llr~L~l~~~ 220 (914)
.|+.++|+.+.+..++.+ .+|...|++|=++....-|++++++++++.
T Consensus 116 SVTtpiAi~is~~iGG~~-----------sLta~~VvitGi~Ga~~g~~llk~~~I~~~ 163 (215)
T PF04172_consen 116 SVTTPIAIEISEQIGGIP-----------SLTAVFVVITGILGAVLGPPLLKLLRIKDP 163 (215)
T ss_pred HhhHHHHHHHHHHhCChH-----------HHHHHHHHHHhhHHHHhHHHHHhHcccccH
Confidence 577778887777766532 377888999999999999999999999754
No 85
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=26.63 E-value=94 Score=27.56 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=32.8
Q ss_pred hhcCHHHHHHHHHhccccccccCCcEEEecCC---EEEEEEeceEEeec
Q 002506 636 EKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 681 (914)
Q Consensus 636 e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~~~---~~~ILl~G~V~~~~ 681 (914)
..++...++.+. .......|.+|+.+-..++ ..++|.+|.++...
T Consensus 3 ~~l~~~~~~~l~-~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~ 50 (120)
T smart00100 3 KNLDAEELRELA-DALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYK 50 (120)
T ss_pred CCCCHHHHHHHH-HhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEE
Confidence 345666666654 5666778999998876654 78899999887753
No 86
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=26.27 E-value=3.3e+02 Score=33.55 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred CChhhHHHHHHHHHhHh-cchhHHHHHHHHHHHHHHHHhHhhc---c-cchhHHHHHHHHHHhhcccccCChhhHHHHHH
Q 002506 1 MGLAFGIASVLWLGFIF-NDTVIEIALTLAVSYIAFFTAQEGA---D-VSGVLTVMTLGMFYAAVARTAFKGESQQSLHY 75 (914)
Q Consensus 1 iGi~~G~~~~~~l~~~~-~d~~~ei~ltl~~~y~~y~iAEe~l---~-~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~ 75 (914)
+|.++|.+.++.+...+ +++..-+....+...+|.+++ -.. . ...++|.+++.++.-.. ...| .......
T Consensus 54 ~GT~iGa~~~~~lv~~~~~~p~l~~~~lal~i~~c~~~~-~~~~~~~~y~~~lag~T~~iv~~~~---~~~p-~~~f~~a 128 (650)
T PF04632_consen 54 IGTLIGAAAGLLLVALFPQSPLLFLLALALWIGLCLYLS-LLDRNFRSYAFMLAGYTAAIVALPA---VGNP-EQVFDLA 128 (650)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHhhc---ccCc-cHHHHHH
Confidence 46777777766665444 556555444333334444444 111 1 22245555555543211 0122 2344456
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 002506 76 FWEMVAYIANTLIFILSGVVIA 97 (914)
Q Consensus 76 fw~~l~~~an~lIFillGl~i~ 97 (914)
+|....-+.-.++.++++..+.
T Consensus 129 ~~R~~ei~iGi~~a~~v~~l~~ 150 (650)
T PF04632_consen 129 LWRVLEILIGILCATLVSMLFF 150 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6666666666666666665553
No 87
>COG2118 DNA-binding protein [General function prediction only]
Probab=26.24 E-value=1.8e+02 Score=27.62 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc----chhHHHhhhhHHHHHHH
Q 002506 420 DARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGL----LEEKEMLHLHDAVQSDL 481 (914)
Q Consensus 420 ~A~~~L~~l~~~fP~v~~~lktr~~~~~ll~~~~~~l~~l~~~Gl----lde~E~~~L~~~l~~~l 481 (914)
+|++.|..++..-|+++++++. ++-.|...|- ||+.+...+...|..+.
T Consensus 53 eAreRL~~irLvRPe~AeavE~-------------qLi~LaqtGri~~~I~e~~lk~IL~~i~~~~ 105 (116)
T COG2118 53 EARERLARVRLVRPELAEAVEN-------------QLIQLAQTGRITHKIDEEELKEILERISPQT 105 (116)
T ss_pred HHHHHHHHhhhcCHHHHHHHHH-------------HHHHHHHcCCCCCCCCHHHHHHHHHHHhHHh
Confidence 6788899999999999999886 3445667775 77777766666665554
No 88
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=26.18 E-value=71 Score=27.60 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=27.3
Q ss_pred cCCceeecCCCCCCeEEEEeccEEEEEEecCCCcEEEEeEeCCCCcc
Q 002506 527 LSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 573 (914)
Q Consensus 527 ~~Ge~I~~eGe~~~~ly~I~sG~Vkv~~~~~~g~~~~~~~l~~G~~f 573 (914)
.+|..-..-. .+.+++|++|.|.+... +|.. ..+++||.|
T Consensus 15 ~pg~~~~~~~--~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~ 54 (74)
T PF05899_consen 15 TPGKFPWPYP--EDEFFYVLEGEVTITDE--DGET---VTFKAGDAF 54 (74)
T ss_dssp ECEEEEEEES--SEEEEEEEEEEEEEEET--TTEE---EEEETTEEE
T ss_pred CCceeEeeCC--CCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEE
Confidence 3555433322 38888999999999864 4544 468898876
No 89
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=24.48 E-value=57 Score=37.79 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCccchhhhhcCCCceeEEEEc-ceEEEEEEcHHHHHHHHhhC
Q 002506 569 HGSNLGLYEVLIGKPYMSDMVTD-SVVLCFFIESDKILSILRSD 611 (914)
Q Consensus 569 ~G~~fGE~~lL~~~~r~atV~A~-t~~~ll~I~~~~f~~ll~~~ 611 (914)
.||-||-.++....||.++++.- .+|..+.+++.+|.+++.+.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 38899999999999999997665 45999999999999998654
No 90
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=24.41 E-value=3.2e+02 Score=26.27 Aligned_cols=68 Identities=7% Similarity=-0.060 Sum_probs=38.2
Q ss_pred EEEEecCCceeecCCCCCCeEEEEeccEEEEE-EecCCCcEEEEeEeCCCCccchhhhhcCCCceeEEEEcceEEEEEE
Q 002506 522 KEIMKLSGVTLYREGSKPSGIWLISNGVVKWT-SKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFI 599 (914)
Q Consensus 522 ~~~~~~~Ge~I~~eGe~~~~ly~I~sG~Vkv~-~~~~~g~~~~~~~l~~G~~fGE~~lL~~~~r~atV~A~t~~~ll~I 599 (914)
....+.||..+-..-.....+++|++|.+++. ..+ |+. ..+.+||.+---+ +.+. .+.+.+++.++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g~~---~~L~aGD~i~~~~---~~~H--~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--GEV---HPIRPGTMYALDK---HDRH--YLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--CEE---EEeCCCeEEEECC---CCcE--EEEcCCCEEEEEE
Confidence 34566788755332222246999999999997 321 222 4688998763221 2232 3333356655544
No 91
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.32 E-value=1.3e+02 Score=21.56 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhccchhHHHhhhhHHH
Q 002506 452 LIDYIQNLEKVGLLEEKEMLHLHDAV 477 (914)
Q Consensus 452 ~~~~l~~l~~~Gllde~E~~~L~~~l 477 (914)
..+.++.++..|.|++.|+.+....|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45668899999999999987654443
No 92
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=24.19 E-value=5.9e+02 Score=32.44 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 002506 23 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILG 102 (914)
Q Consensus 23 ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~an~lIFillGl~i~~~v~~ 102 (914)
.+..+++..+++.++.+...+...++..++.|+.+-+-+ |=.......+=....-++--+-|+..|+...-.
T Consensus 259 ~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~--- 330 (769)
T KOG1650|consen 259 YICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDIS--- 330 (769)
T ss_pred eehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHH---
Confidence 445555556666666633434777778888888764321 111111111211222223333344445433210
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcc-hhHHH
Q 002506 103 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVA 164 (914)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~Gl-RGavs 164 (914)
. ...|...+.......++-++.+....- -++++|++.+.++..=. +|-+.
T Consensus 331 ---~----i~~~~~~~~~i~~~~~~K~l~t~~~sl-----~~k~p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 331 ---R----INKWGALIRTILIFGAVKLLSTLGTSL-----YCKLPLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCchhHHHHHHHHHHhhhHHH
Confidence 0 111666666666666666666643322 14678888876654422 44443
No 93
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=23.97 E-value=9.4e+02 Score=26.03 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=10.6
Q ss_pred hCCCCChhhhHHHhhh
Q 002506 142 FGYGLEWKEAIILVWS 157 (914)
Q Consensus 142 ~~~~~~~~~~~vl~w~ 157 (914)
.|...+.+-+-++.|+
T Consensus 118 ~gp~~~~rs~~~v~W~ 133 (249)
T PF10225_consen 118 YGPPVDPRSRNFVKWA 133 (249)
T ss_pred cCCCccHhHHHHHHHH
Confidence 4555566777788885
No 94
>TIGR00394 lac_pts_IIC phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=22.99 E-value=1.1e+03 Score=27.59 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=15.3
Q ss_pred hhcccchhHHHHHHHHHHhh
Q 002506 40 EGADVSGVLTVMTLGMFYAA 59 (914)
Q Consensus 40 e~l~~SGvlAvv~~Gl~~~~ 59 (914)
..+|.+|+.....+|++.+.
T Consensus 121 ~~lG~~Glf~aiivg~l~~~ 140 (412)
T TIGR00394 121 AFMGTKGLLTAFIAAFITVN 140 (412)
T ss_pred hhcCcccHHHHHHHHHHHHH
Confidence 35688888888888887764
No 95
>PRK09592 celD cellobiose phosphotransferase system IIC component; Reviewed
Probab=22.64 E-value=1.3e+03 Score=27.23 Aligned_cols=10 Identities=40% Similarity=0.561 Sum_probs=9.0
Q ss_pred HHhhhcchhH
Q 002506 153 ILVWSGLRGA 162 (914)
Q Consensus 153 vl~w~GlRGa 162 (914)
+++|.|++|+
T Consensus 265 llw~~GiHg~ 274 (449)
T PRK09592 265 ALWIVGIHGA 274 (449)
T ss_pred HHhhhccCch
Confidence 7899999997
No 96
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=22.24 E-value=1.2e+02 Score=31.86 Aligned_cols=47 Identities=11% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHhhcCHHHHHHHHHhccccccccCCcEEEecCC---EEEEEEeceEEee
Q 002506 633 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTH 680 (914)
Q Consensus 633 ~i~e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~~~---~~~ILl~G~V~~~ 680 (914)
..|..++..++..+. .......|.+|+.+..+++ .+++|++|.++..
T Consensus 13 ~~f~~L~~~~~~~l~-~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~ 62 (236)
T PRK09392 13 PLFADMADATFERLM-RGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELS 62 (236)
T ss_pred ccccCCCHHHHHHHH-hhcceeecCCCCEEEeCCCccceEEEEEeCEEEEE
Confidence 356678888888776 5677889999999987765 7899999998874
No 97
>PRK03818 putative transporter; Validated
Probab=21.78 E-value=4.2e+02 Score=32.26 Aligned_cols=46 Identities=7% Similarity=0.165 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcccc-----cCChhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhc
Q 002506 48 LTVMTLGMFYAAVART-----AFKGESQQSLHYFWEMVAYIANTLIFIL-SGVVIAEGIL 101 (914)
Q Consensus 48 lAvv~~Gl~~~~~~~~-----~~s~~~~~~~~~fw~~l~~~an~lIFil-lGl~i~~~v~ 101 (914)
=++.+.||++++++++ .+++.....+.+ +-..+|+. +|+.-....+
T Consensus 404 ~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~--------~GL~lFla~vGl~aG~~f~ 455 (552)
T PRK03818 404 GGPLIVALILGRIGSIGKLYWFMPPSANLALRE--------LGIVLFLAVVGLKSGGDFV 455 (552)
T ss_pred hHHHHHHHHHHhccCCCCceeecCHHHHHHHHH--------HhHHHHHHHHHhhhhHHHH
Confidence 3789999999998865 355544433333 22344444 6777665433
No 98
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.75 E-value=4.3e+02 Score=29.64 Aligned_cols=90 Identities=24% Similarity=0.519 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcccCchhhhhcccCCchhhHH-----HHhccCch-HHHHHH-
Q 002506 299 LLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKF-----LQTSMFPQ-KLITYF- 371 (914)
Q Consensus 299 ~l~~~r~~~~~l~~~g~is~~~~~~L~~~id~~ld~~~~~l~~w~~l~~~~~~p~~~r~-----l~~~~~~~-~~~~~~- 371 (914)
++...|+.|.+.+++ |....+.+|..+-+.+..-..+ -|+.|.+.--.|.|+.| +...-+|- ..+..|
T Consensus 228 LMseirDnf~k~LDd---S~~GI~~~Msr~~~~lk~~D~E--L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWD 302 (370)
T KOG4567|consen 228 LMSEIRDNFIKTLDD---SVGGIHFLMSRLSELLKKHDEE--LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWD 302 (370)
T ss_pred HHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhhHH--HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHH
Confidence 455667777777773 3344555666665555443333 47777644333443333 22222221 112211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Q 002506 372 ----TVERLEFACSICAAFLRAHKIA 393 (914)
Q Consensus 372 ----~~~rle~~~~i~~~fl~a~r~~ 393 (914)
--+|++...|+||++|...|..
T Consensus 303 sl~sD~~rfd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 303 SLLSDPQRFDFLLYICCSMLILVRER 328 (370)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 1257888899999988766644
No 99
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=21.35 E-value=1.2e+03 Score=26.22 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhHhcchhHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHhhcccccCChhhHHHHHHHHHHHHHHH
Q 002506 5 FGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIA 84 (914)
Q Consensus 5 ~G~~~~~~l~~~~~d~~~ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~~~~~~~~~s~~~~~~~~~fw~~l~~~a 84 (914)
+|.+.+..+|....=.+.-+..-+++| ++|.=.+=..|.-+++.+|..|+.+..|-.. ..+- .-.-++-+.
T Consensus 128 iGaLvVV~lRniiGi~T~GTFmPVLIA-lAF~eT~L~~Gli~FllIV~~GL~iR~yLs~-------LnLL-lV~RisaVl 198 (313)
T PF14402_consen 128 IGALVVVFLRNIIGIKTSGTFMPVLIA-LAFRETQLLWGLILFLLIVAIGLLIRSYLSH-------LNLL-LVPRISAVL 198 (313)
T ss_pred hhhHhhHHhhHeeCcccccchHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-------hhhH-HHHHHHHHH
Confidence 455555566665433222222222222 2333333457899999999999999876311 0000 111234445
Q ss_pred HHHHHHHHhhhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhHHHhhhcchhHHH
Q 002506 85 NTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVA 164 (914)
Q Consensus 85 n~lIFillGl~i~~~v~~~~~~~~~~~~~~~~~l~~~~~i~v~R~~~v~~~~p~l~~~~~~~~~~~~~vl~w~GlRGavs 164 (914)
-.+|+++.++.+...-+. + ..+....+.-.+++++.+=|+-.++ ..-.+++.+.-.-|-+=-|+.
T Consensus 199 i~VI~ii~~~sv~~~klG---l--~~glsVtfFPmIILawTIERmSilW----------EEeG~~ev~~qg~GSLlvAvl 263 (313)
T PF14402_consen 199 IVVILIIAAFSVLSYKLG---L--EEGLSVTFFPMIILAWTIERMSILW----------EEEGAKEVLKQGGGSLLVAVL 263 (313)
T ss_pred HHHHHHHHHHHHHHHHhC---c--ccCCeeehHHHHHHHHHHHHHHhhh----------hhcCcHHHHHHhhhHHHHHHH
Confidence 555566665554432111 1 1233333333444555666655442 233556666554444433333
No 100
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=21.28 E-value=1.1e+03 Score=27.90 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=9.8
Q ss_pred HHHhhhcchhHHH
Q 002506 152 IILVWSGLRGAVA 164 (914)
Q Consensus 152 ~vl~w~GlRGavs 164 (914)
.++||.|++|...
T Consensus 242 ~llWffGIHG~~v 254 (452)
T PRK10297 242 PLLWFFGIHGALA 254 (452)
T ss_pred HHHHHhcCCcHHH
Confidence 4788999999543
No 101
>PLN02868 acyl-CoA thioesterase family protein
Probab=20.74 E-value=1.4e+02 Score=34.81 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHhhcCHHHHHHHHHhccccccccCCcEEEecCC---EEEEEEeceEEeec
Q 002506 633 QIFEKLTMQDMRALIAERSKMTTCLRGEIIEIPYH---CIGFLLEGFIKTHG 681 (914)
Q Consensus 633 ~i~e~Ls~~dlr~ll~~~s~l~~y~~ge~I~~~~~---~~~ILl~G~V~~~~ 681 (914)
.+|..++..++..+. .......|.+|+.|..+++ .++||++|.|+...
T Consensus 14 ~~F~~L~~~~l~~l~-~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~ 64 (413)
T PLN02868 14 PLLQRLPSSSLKKIA-EVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSG 64 (413)
T ss_pred cccccCCHHHHHHHH-HhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEE
Confidence 467778888887776 5677889999999988875 78999999998754
No 102
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.29 E-value=3.9e+02 Score=27.62 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHH
Q 002506 23 EIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFY 57 (914)
Q Consensus 23 ei~ltl~~~y~~y~iAEe~l~~SGvlAvv~~Gl~~ 57 (914)
--.+.++.+..+|+-+ . .-+-|+|..+..|++-
T Consensus 105 lg~~aLlsgitaff~~-n-A~~~GlItlll~a~vg 137 (226)
T COG4858 105 LGAMALLSGITAFFQK-N-AQVYGLITLLLTAVVG 137 (226)
T ss_pred HHHHHHHHHHHHHHhc-C-CcchhHHHHHHHHHhh
Confidence 3456677788888888 4 6788888776666543
Done!