Query 002506
Match_columns 914
No_of_seqs 485 out of 3812
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 16:33:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002506.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1225-1228//hhsearch_pdb/002506hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnp_B CAMP-dependent protein 1.0 1 1 174.7 12.4 179 496-682 143-324 (416)
2 2ptm_A Hyperpolarization-activ 1.0 1 1 173.9 17.9 188 426-627 8-196 (198)
3 1zyb_A Transcription regulator 1.0 1 1 170.9 8.6 223 487-739 7-232 (232)
4 3bpz_A Potassium/sodium hyperp 1.0 1 1 168.7 17.5 188 426-628 9-197 (202)
5 3dkw_A DNR protein; CRP-FNR, H 1.0 1 1 168.0 7.4 220 494-740 5-225 (227)
6 4din_B CAMP-dependent protein 1.0 1 1 167.6 14.4 175 496-682 128-305 (381)
7 3d0s_A Transcriptional regulat 1.0 1 1 166.6 11.2 218 497-740 5-224 (227)
8 3fx3_A Cyclic nucleotide-bindi 1.0 1 1 165.4 10.6 218 494-740 7-224 (237)
9 3e97_A Transcriptional regulat 1.0 1 1 165.1 8.8 218 495-740 3-222 (231)
10 4ev0_A Transcription regulator 1.0 1 1 165.0 12.1 210 500-740 1-210 (216)
No 1
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=1.00 E-value=1 Score=174.75 Aligned_cols=179 Identities=11% Similarity=0.128 Sum_probs=155.7
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCH
Q ss_conf 46688508989999930078875047799965896564378877858999520799999618981899767079991413
Q 002506 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 575 (914)
Q Consensus 496 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE 575 (914)
+.++++++++|++|+++++..+...++.+.|.+|++|+++|+.++++|+|.+|.|+++. +.+|+...+..+++|++|||
T Consensus 143 i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe 221 (416)
T 3tnp_B 143 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGE 221 (416)
T ss_dssp HHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECG
T ss_pred HHHHHHCCHHHHCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEE-ECCCCEEEEEEECCCCEEEE
T ss_conf 99998389867659999999999735799968999999489877628999850899999-36997799999559988863
Q ss_pred HHHHCCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 46424998302899863489998809999999942979999999999999997754699851579999999984010011
Q 002506 576 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 655 (914)
Q Consensus 576 ~alL~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s~l~~ 655 (914)
.+++.+.||.++++|.++|.+|.|++++|..++..+|.+...++..+...+ ..+..++..++..+. .......
T Consensus 222 ~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v------~lf~~Ls~~el~~L~-~~l~~~~ 294 (416)
T 3tnp_B 222 LALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESL------PFLKSLEVSERLKVV-DVIGTKV 294 (416)
T ss_dssp GGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGC------GGGTTCCHHHHHHHH-HHCEEEE
T ss_pred HHHHCCCCCCCEEEECCCEEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHC------HHHHCCCHHHHHHHH-HHCEEEE
T ss_conf 787369985657997567599999512223443001047899999998524------575529999999998-6606999
Q ss_pred CCCCCEEEECCC---EEEEEEECEEEEECC
Q ss_conf 358938996297---899998214874043
Q 002506 656 CLRGEIIEIPYH---CIGFLLEGFIKTHGL 682 (914)
Q Consensus 656 y~~ge~I~~~~~---~~~ILl~G~V~~~~~ 682 (914)
|.+|+.|..+++ .+|||++|.++....
T Consensus 295 ~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~ 324 (416)
T 3tnp_B 295 YNDGEQIIAQGDLADSFFIVESGEVKITMK 324 (416)
T ss_dssp ECTTCEEECTTSCCCEEEEEEEEEEEEECC
T ss_pred ECCCCEEEECCCCCCEEEEEEECEEEEEEE
T ss_conf 789999993897388899999498999993
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=1.00 E-value=1 Score=173.91 Aligned_cols=188 Identities=14% Similarity=0.226 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
Q ss_conf 999984256899999721289999999999999999256505877-6534889999987313999888779466885089
Q 002506 426 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 504 (914)
Q Consensus 426 ~~l~~~fPei~~~iktk~a~~~lL~~~~~~i~~l~~~Gllde~E~-~~L~~~I~~~lk~L~~~p~~~~~~~~~~lL~~~p 504 (914)
..++...-++..+|+.++++..+..+.++|+++.++....++.+. ..+...+..++..-. ..++++++|
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~----------~~~~l~~~~ 77 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYN----------CRDLVASVP 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHH----------THHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHH----------HHHHHHCCC
T ss_conf 9999999999999997599999999999999999716678999999983999999999999----------999996485
Q ss_pred CCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHCCCCC
Q ss_conf 89999930078875047799965896564378877858999520799999618981899767079991413464249983
Q 002506 505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 584 (914)
Q Consensus 505 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~alL~~~~r 584 (914)
+|.+++++.+..+...++.+.+.+|++|+++|+.++++|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.++
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~ 153 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERR 153 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCC
T ss_pred CHHCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEEECEEEEEE--CCCE--EEEEECCCCEECHHHHCCCCCC
T ss_conf 33049999999999963500429998899779867679999838899996--5995--9988469989411887079960
Q ss_pred EEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 0289986348999880999999994297999999999999999
Q 002506 585 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 627 (914)
Q Consensus 585 ~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~ 627 (914)
.++++|.++|.++.|++++|.+++.++|.+...++..+..++.
T Consensus 154 ~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 154 VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred CEEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 1089992688999976999999999895999999999999985
No 3
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=1.00 E-value=1 Score=170.91 Aligned_cols=223 Identities=12% Similarity=0.069 Sum_probs=178.8
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCC--CEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEE
Q ss_conf 9998887794668850898999993007887504--77999658965643788778589995207999996189818997
Q 002506 487 NPPLVKFPKISDLISAHPLLRELPPSVREPLELS--TKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLH 564 (914)
Q Consensus 487 ~p~~~~~~~~~~lL~~~plF~~Ls~e~l~~L~~~--~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~ 564 (914)
.|+...+|+..+++.++|+|..+++++++.+... ++.+.|.+|++|+++|+.++++|+|.+|.|+++..+.+|++.++
T Consensus 7 ~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l 86 (232)
T 1zyb_A 7 HHHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVI 86 (232)
T ss_dssp CCHHHHHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEE
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEE
T ss_conf 03276799999998649441389999999998518717999789998988989021799999328999999899987999
Q ss_pred EEECCCCCCCHHHHHCCCC-CEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 6707999141346424998-302899863489998809999999942979999999999999997754699851579999
Q 002506 565 PVFTHGSNLGLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDM 643 (914)
Q Consensus 565 ~~l~~G~~fGE~alL~~~~-r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dl 643 (914)
..+++|++||+.+++.+.+ +.++++|.++|.++.|++++|.+++.++|.+...+.+.+..++.... .....+...+.
T Consensus 87 ~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~--~~~~~l~~~~~ 164 (232)
T 1zyb_A 87 EQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLY--SRLWDEPTLDL 164 (232)
T ss_dssp EEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHH--HHTTSCCCCSH
T ss_pred EECCCCCEEEEHHHHCCCCCCCEEEEECCCEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCH
T ss_conf 9956887561118757998885699984531999987899998863089999999999999999999--99999860489
Q ss_pred HHHHHHCCCCCCCCCCCEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99998401001135893899629789999821487404301011898544788766112223367766555200100231
Q 002506 644 RALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYL 723 (914)
Q Consensus 644 r~li~~~s~l~~y~~ge~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (914)
..+++. ........ ++ |.+...-++++ |++-.++.|.+.++.+..++..|+.....
T Consensus 165 ~~Rl~~-~L~~l~~~------~~--------~~~~~~~t~~~-lA~~lG~sr~tvsR~l~~l~~~glI~~~~-------- 220 (232)
T 1zyb_A 165 KSKIIR-FFLSHCEK------PQ--------GEKTFKVKMDD-LARCLDDTRLNISKTLNELQDNGLIELHR-------- 220 (232)
T ss_dssp HHHHHH-HHHTTCSS------SS--------SCEEEECCHHH-HHHHHTSCHHHHHHHHHHHHHTTSCEEET--------
T ss_pred HHHHHH-HHHHHHHH------CC--------CEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECC--------
T ss_conf 999999-99999860------59--------84870689999-99996898467999999998789889648--------
Q ss_pred EECCCEEEEEECCCCC
Q ss_conf 1001209999524323
Q 002506 724 VETRARVIIFDIAAFE 739 (914)
Q Consensus 724 ve~~~~~~~~d~~~~~ 739 (914)
.++.+.|.++|+
T Consensus 221 ----~~i~I~d~~~L~ 232 (232)
T 1zyb_A 221 ----KEILIPDAQKLL 232 (232)
T ss_dssp ----TEEEESCGGGGC
T ss_pred ----CEEEEECHHHCC
T ss_conf ----889980768768
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=1.00 E-value=1 Score=168.71 Aligned_cols=188 Identities=16% Similarity=0.238 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCC
Q ss_conf 999984256899999721289999999999999999256505877-6534889999987313999888779466885089
Q 002506 426 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 504 (914)
Q Consensus 426 ~~l~~~fPei~~~iktk~a~~~lL~~~~~~i~~l~~~Gllde~E~-~~L~~~I~~~lk~L~~~p~~~~~~~~~~lL~~~p 504 (914)
..++...-++.++|+.++++..+..+.++|+++.++....++.+. ..+...+..++.... ..++++++|
T Consensus 9 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~----------~~~~l~~~~ 78 (202)
T 3bpz_A 9 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFN----------CRKLVASMP 78 (202)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHH----------THHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHH----------HHHHHHCCC
T ss_conf 9999999999999987599999999999999999855587899999876999999999999----------999996597
Q ss_pred CCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCHHHHHCCCCC
Q ss_conf 89999930078875047799965896564378877858999520799999618981899767079991413464249983
Q 002506 505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 584 (914)
Q Consensus 505 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~alL~~~~r 584 (914)
+|.+++++.+..+...++...+.+|++|+++|+.++++|||.+|.|++.. .+|+.. .+++|++|||.+++.+.++
T Consensus 79 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~ 153 (202)
T 3bpz_A 79 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRR 153 (202)
T ss_dssp HHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBC
T ss_pred CHHCCCHHHHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCEEEEEE--CCCEEE---EECCCCEECCHHHHCCCCC
T ss_conf 33139999999999957805789998899889847769999636999997--897489---9718998432898469984
Q ss_pred EEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 02899863489998809999999942979999999999999997
Q 002506 585 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628 (914)
Q Consensus 585 ~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~ 628 (914)
.++++|.++|.++.|++++|..++..+|.+...+...+..++..
T Consensus 154 ~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~ 197 (202)
T 3bpz_A 154 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDR 197 (202)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 62899855889999889999999998979999999999999998
No 5
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=168.01 Aligned_cols=220 Identities=14% Similarity=0.191 Sum_probs=178.0
Q ss_pred CCHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 79466885089899999300788750477999658965643788778589995207999996189818997670799914
Q 002506 494 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 573 (914)
Q Consensus 494 ~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~f 573 (914)
....++++++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 5 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 84 (227)
T 3dkw_A 5 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 84 (227)
T ss_dssp SSSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEE
T ss_pred HHHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 56799985396530799999999985377999789998986998255389999378999999999988999982798875
Q ss_pred CHHHHHCCCC-CEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 1346424998-302899863489998809999999942979999999999999997754699851579999999984010
Q 002506 574 GLYEVLIGKP-YMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSK 652 (914)
Q Consensus 574 GE~alL~~~~-r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s~ 652 (914)
|+.+++.+.| +.++++|.++|.++.|++++|.+++.++|.+...++..+..++.... .....+...+...+++. ..
T Consensus 85 G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~Rl~~-~L 161 (227)
T 3dkw_A 85 AEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRI--DEIETLSLKNATHRVVR-YL 161 (227)
T ss_dssp SCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH
T ss_pred EEHHHCCCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHH-HH
T ss_conf 0577617999872689986757999980899999998798999999999999999999--99999863899899999-99
Q ss_pred CCCCCCCCEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEE
Q ss_conf 01135893899629789999821487404301011898544788766112223367766555200100231100120999
Q 002506 653 MTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 732 (914)
Q Consensus 653 l~~y~~ge~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~ 732 (914)
...+... .++ .+.+...-++++ |++-.++.|.+.++.+..++..|+..... .++++
T Consensus 162 ~~~~~~~-----~~~------~~~~~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i 217 (227)
T 3dkw_A 162 LTLAAHA-----PGE------NCRVEIPVAKQL-VAGHLSIQPETFSRIMHRLGDEGIIHLDG------------REISI 217 (227)
T ss_dssp HHHHCSS-----SSS------CCCCCCCSCTHH-HHHHTTSCHHHHHHHHHHHHHHTSEEESS------------SCEEE
T ss_pred HHHHHHC-----CCC------CEEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECC------------CEEEE
T ss_conf 9850540-----799------708983389999-99884997888999999999789599449------------99999
Q ss_pred EECCCCCC
Q ss_conf 95243233
Q 002506 733 FDIAAFEA 740 (914)
Q Consensus 733 ~d~~~~~~ 740 (914)
.|.++|+.
T Consensus 218 ~d~~~L~~ 225 (227)
T 3dkw_A 218 LDRERLEC 225 (227)
T ss_dssp SCSTTTSS
T ss_pred ECHHHHHH
T ss_conf 67999964
No 6
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=167.61 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=152.3
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCH
Q ss_conf 46688508989999930078875047799965896564378877858999520799999618981899767079991413
Q 002506 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGL 575 (914)
Q Consensus 496 ~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE 575 (914)
+.++++++++|.+|+++++..+...++.+.|.+|++|+++|+.++++|+|.+|.|+++.. |+ .+..+++|++|||
T Consensus 128 i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~---~~--~v~~l~~G~~fGe 202 (381)
T 4din_B 128 LAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN---GE--WVTNISEGGSFGE 202 (381)
T ss_dssp HHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEET---TE--EEEEEESSCCBCG
T ss_pred HHHHHHCCHHHHCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEEC---CE--EEEECCCCCEEEC
T ss_conf 999984795244499999999997414999789998995898787599998419999999---86--8321799987770
Q ss_pred HHHHCCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
Q ss_conf 46424998302899863489998809999999942979999999999999997754699851579999999984010011
Q 002506 576 YEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTT 655 (914)
Q Consensus 576 ~alL~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s~l~~ 655 (914)
.+++.+.|+.++++|.++|.+|.|++++|..++..+|.+...++.....++. .+..++..++..+. .......
T Consensus 203 ~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~------~f~~Ls~~el~~l~-~~~~~~~ 275 (381)
T 4din_B 203 LALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVS------ILESLEKWERLTVA-DALEPVQ 275 (381)
T ss_dssp GGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCS------TTTTCCTTHHHHHH-TTCBCCC
T ss_pred HHHHCCCCCCEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCHHHHHHHH-HHHHHCC
T ss_conf 4774699942189977878999986388877664024889999998864018------87751099999998-7520113
Q ss_pred CCCCCEEEECCC---EEEEEEECEEEEECC
Q ss_conf 358938996297---899998214874043
Q 002506 656 CLRGEIIEIPYH---CIGFLLEGFIKTHGL 682 (914)
Q Consensus 656 y~~ge~I~~~~~---~~~ILl~G~V~~~~~ 682 (914)
|.+|+.|..+++ .+|||.+|.++....
T Consensus 276 ~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~ 305 (381)
T 4din_B 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQR 305 (381)
T ss_dssp BCSSCBSSCTTSBCCEEEEEEESCEEEECC
T ss_pred CCCCCEEEECCCCCCEEEEEEECEEEEEEE
T ss_conf 799999993898278799999488999995
No 7
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=1.00 E-value=1 Score=166.60 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=172.9
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCHH
Q ss_conf 66885089899999300788750477999658965643788778589995207999996189818997670799914134
Q 002506 497 SDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLY 576 (914)
Q Consensus 497 ~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~ 576 (914)
.++++++|+|.++++++++.+...++.+.|.+|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEH
T ss_conf 99985396432799999999996475999689998985879588799999358999999899859999985499977258
Q ss_pred HHHCCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC--CCC
Q ss_conf 642499830289986348999880999999994297999999999999999775469985157999999998401--001
Q 002506 577 EVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERS--KMT 654 (914)
Q Consensus 577 alL~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s--~l~ 654 (914)
+++.+.++.++++|.++|.++.||+++|.+++.++|.+...+++.+..++..... ....+...+...+++... ...
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~~l~~~~~~~Rl~~~L~~l~~ 162 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNN--NLADLIFTDVPGRVAKQLLQLAQ 162 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCEEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8748998405999855479999849999999997949999999999999999999--99998628988999999999999
Q ss_pred CCCCCCEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEEEE
Q ss_conf 13589389962978999982148740430101189854478876611222336776655520010023110012099995
Q 002506 655 TCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFD 734 (914)
Q Consensus 655 ~y~~ge~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d 734 (914)
.+ |.. . ++. ..+...-++++ |++-.++.|.+.++.+..++..|+..... .++++.|
T Consensus 163 ~~--~~~--~-~~~------~~i~~~~t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d 218 (227)
T 3d0s_A 163 RF--GTQ--E-GGA------LRVTHDLTQEE-IAQLVGASRETVNKALADFAHRGWIRLEG------------KSVLISD 218 (227)
T ss_dssp HH--EEE--E-TTE------EEEECCCCHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESC
T ss_pred HH--CCC--C-CCC------EEECCCCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECC------------CEEEECC
T ss_conf 81--976--8-993------49737879999-99886876999999999999789889569------------9899868
Q ss_pred CCCCCC
Q ss_conf 243233
Q 002506 735 IAAFEA 740 (914)
Q Consensus 735 ~~~~~~ 740 (914)
.++|+.
T Consensus 219 ~~~L~~ 224 (227)
T 3d0s_A 219 SERLAR 224 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999998
No 8
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=1.00 E-value=1 Score=165.40 Aligned_cols=218 Identities=20% Similarity=0.190 Sum_probs=175.0
Q ss_pred CCHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 79466885089899999300788750477999658965643788778589995207999996189818997670799914
Q 002506 494 PKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNL 573 (914)
Q Consensus 494 ~~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~f 573 (914)
+...++++++|+|.++++++++.+...++.+.|.+|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEECCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 77999986797333599999999985177999789998870899656489999448999999999998999990799883
Q ss_pred CHHHHHCCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf 13464249983028998634899988099999999429799999999999999977546998515799999999840100
Q 002506 574 GLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKM 653 (914)
Q Consensus 574 GE~alL~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s~l 653 (914)
|+.+++.+.++.++++|.++|.++.|++++|.+++.++|.+...+++.+..++.... .....+...+...+++ ....
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~--~~~~~l~~~~~~~Rl~-~~L~ 163 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLV--AQLEQLKAQTGAQRVA-EFLL 163 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHH-HHHH
T ss_pred CHHHHHCCCCCCCEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHH-HHHH
T ss_conf 137874699987469987865999984999999998798999999999999999999--9999986489999999-9999
Q ss_pred CCCCCCCEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEEE
Q ss_conf 11358938996297899998214874043010118985447887661122233677665552001002311001209999
Q 002506 654 TTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIF 733 (914)
Q Consensus 654 ~~y~~ge~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~ 733 (914)
...... ++ ...+...-++++ |++-.++.|.+.++.+..++..|+ .... .++.+.
T Consensus 164 ~~~~~~------~~------~~~~~l~~t~~~-iA~~lg~sr~tvsR~l~~L~~~gi-~~~~------------~~i~I~ 217 (237)
T 3fx3_A 164 ELCDCD------TG------ACEVTLPYDKML-IAGRLGMKPESLSRAFSRLKAAGV-TVKR------------NHAEIE 217 (237)
T ss_dssp HHCCC-----------------EEECCSCTHH-HHHHTTCCHHHHHHHHHHHGGGTE-ECCT------------TEEEES
T ss_pred HHHHHC------CC------CEEEEECCCHHH-HHHHHCCCHHHHHHHHHHHHHCCE-EEEC------------CEEEEC
T ss_conf 974643------99------759971699999-998869989999999999997792-7658------------999985
Q ss_pred ECCCCCC
Q ss_conf 5243233
Q 002506 734 DIAAFEA 740 (914)
Q Consensus 734 d~~~~~~ 740 (914)
|.++|+.
T Consensus 218 d~~~L~~ 224 (237)
T 3fx3_A 218 DIALLRD 224 (237)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
T ss_conf 8999999
No 9
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=1.00 E-value=1 Score=165.07 Aligned_cols=218 Identities=15% Similarity=0.074 Sum_probs=174.2
Q ss_pred CHHHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCC
Q ss_conf 94668850898999993007887504779996589656437887785899952079999961898189976707999141
Q 002506 495 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLG 574 (914)
Q Consensus 495 ~~~~lL~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fG 574 (914)
+..++++++|+|.++++++++.+...++.+.|.+|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||
T Consensus 3 ~~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 3 GRLDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CCHHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred HHHHHHHCCHHHCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEECEEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 28998743952226999999999985689997899999837998986999993689999988999658988528998874
Q ss_pred HHHHHCCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHCCCC
Q ss_conf 3464249983028998634899988099999999429799999999999999977546998515799999-999840100
Q 002506 575 LYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMR-ALIAERSKM 653 (914)
Q Consensus 575 E~alL~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr-~li~~~s~l 653 (914)
+.+++.+.++.++++|.++|.++.|++++|.+++.++|.+...+++.+..++..... ... ...+.. .+++.. ..
T Consensus 83 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~--~~~--~~~~~~~~Rl~~~-L~ 157 (231)
T 3e97_A 83 ETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLND--ELI--AFGQNTEAALTHV-FA 157 (231)
T ss_dssp TTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHH--HHHHCHHHHHHHH-HH
T ss_pred EHHHHCCCCCEEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHH--HHCCCHHHHHHHH-HH
T ss_conf 479967997317999988479999809999999987989999999999999999999--999--7426717799999-99
Q ss_pred CCCCC-CCEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEE
Q ss_conf 11358-93899629789999821487404301011898544788766112223367766555200100231100120999
Q 002506 654 TTCLR-GEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVII 732 (914)
Q Consensus 654 ~~y~~-ge~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~ 732 (914)
..... +. +.. ...+...-++++ |++-.++.|.+.++.+..++..|+..... .++.+
T Consensus 158 ~~~~~~~~----~~~------~~~~~~~~t~~~-iA~~lg~sr~tvsR~l~~L~~~g~I~~~~------------~~i~i 214 (231)
T 3e97_A 158 NLYRQRLA----AGV------PQPEVLPLGTQD-IMARTSSSRETVSRVLKRLEAHNILEVSP------------RSVTL 214 (231)
T ss_dssp HHHHHHHH----HTC------SSTTEECCCHHH-HHHHHTCCHHHHHHHHHHHHHTTSEEECS------------SCEEE
T ss_pred HHHHHCCC----CCC------CCEEECCCCHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECC------------CEEEE
T ss_conf 99885187----889------955765879999-98874872999999999998789489529------------98999
Q ss_pred EECCCCCC
Q ss_conf 95243233
Q 002506 733 FDIAAFEA 740 (914)
Q Consensus 733 ~d~~~~~~ 740 (914)
.|.++|+.
T Consensus 215 ~d~~~L~~ 222 (231)
T 3e97_A 215 LDLAALEA 222 (231)
T ss_dssp SCHHHHHH
T ss_pred ECHHHHHH
T ss_conf 48899999
No 10
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=164.99 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=172.5
Q ss_pred HHCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEECCCCCCCEEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 85089899999300788750477999658965643788778589995207999996189818997670799914134642
Q 002506 500 ISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVL 579 (914)
Q Consensus 500 L~~~plF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iyiI~sG~Vkv~~~~~~g~~~~~~~l~~G~~fGE~alL 579 (914)
|+++|+|.++++++++.+...++.+.|++|++|+++|++++++|+|.+|.|+++..+.+|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCCHHHCCCCHHHHHHHHHHHEEEEECCCCEEEECCCCCCEEEEEEECEEEEEEECCCCCEEEEEEECCCCEEEEHHHC
T ss_conf 98885324999999999998621789589898980899788899999478999998899978999885699897242440
Q ss_pred CCCCCEEEEEECCEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 49983028998634899988099999999429799999999999999977546998515799999999840100113589
Q 002506 580 IGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRG 659 (914)
Q Consensus 580 ~~~~r~atv~A~t~~~ll~I~~~~f~~ll~~~p~l~~~l~~~~~~~l~~l~~~~l~e~Ls~~dlr~li~~~s~l~~y~~g 659 (914)
.+.++.++++|.++|.++.|++++|.+++.++|.+...+++.+..++.... +....+...+...+++. ........+
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~Rl~~-~L~~~~~~~ 157 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREAD--LELDLLSFEEARNRVAY-ALLKLLRQG 157 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred CCCCCCEEEEECCCEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHH-HHHHHHHCC
T ss_conf 799864599985777999982999999998790999999999999999999--99999854899999999-999986407
Q ss_pred CEEEECCCEEEEEEECEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEEEECCCCC
Q ss_conf 38996297899998214874043010118985447887661122233677665552001002311001209999524323
Q 002506 660 EIIEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFE 739 (914)
Q Consensus 660 e~I~~~~~~~~ILl~G~V~~~~~~eelI~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~~~~~~d~~~~~ 739 (914)
.. -.+.. ++++ |++-.++.|.+.++.+..++..|+..... .++++.|.++|+
T Consensus 158 ~~-------------~~~~~--t~~~-lA~~lg~sr~tvsR~l~~l~~~g~I~~~~------------~~i~i~d~~~L~ 209 (216)
T 4ev0_A 158 LG-------------PLFQI--RHHE-LAALAGTSRETVSRVLHALAEEGVVRLGP------------GTVEVREAALLE 209 (216)
T ss_dssp CC-------------SEEEC--CHHH-HHHHHTSCHHHHHHHHHHHHHTTSEEEET------------TEEEESCHHHHH
T ss_pred CC-------------CCCCC--CHHH-HHHHHCCCHHHHHHHHHHHHHCCCEEECC------------CEEEEECHHHHH
T ss_conf 75-------------67788--9999-99885998999999999999789889669------------989994799999
Q ss_pred C
Q ss_conf 3
Q 002506 740 A 740 (914)
Q Consensus 740 ~ 740 (914)
.
T Consensus 210 ~ 210 (216)
T 4ev0_A 210 E 210 (216)
T ss_dssp H
T ss_pred H
T ss_conf 8
Done!