RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002506
(914 letters)
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 99.3 bits (248), Expect = 7e-22
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 21/235 (8%)
Query: 1 MGLAFGIASVLWLGFI----FNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMF 56
+GL G L + + ++E LTL +++ A+ A+ VSG+L V+ G+
Sbjct: 200 LGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL-GVSGILAVVVAGLV 258
Query: 57 YAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWG 115
R S + L FWE++ ++ N L+F+L G + +L
Sbjct: 259 LGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL--------LALGLL 310
Query: 116 YLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRS 174
L++ + V ++R V +L L W+E + L W+G RG V+L+L+L +
Sbjct: 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIP-- 368
Query: 175 SGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILD 229
+ L +F ++ +L+V G T + L++ + SA + IL
Sbjct: 369 ----LELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEVSEESALAKEILG 419
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 83.3 bits (206), Expect = 2e-16
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Query: 2 GLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVA 61
G+ FG F + IE +SY+++ A E +SG+L ++ G+
Sbjct: 218 GVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFA-ETLHLSGILALIFCGITMKKYV 276
Query: 62 RTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLY 121
SQ ++ YF +M++ ++ TLIFI GV + NH +W +++
Sbjct: 277 EANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTE---------NHEWNWAFVVATL 327
Query: 122 IFVQVSRLFVVGTLYPVLRNFG-YGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSL 180
F + R+ V TL + F + +K+ +++ ++GLRGAVA +L+L
Sbjct: 328 SFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALAL-------LLDE 380
Query: 181 ITSETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRI 227
LFV T +VF T+I G T + ++ +L + K +K +I
Sbjct: 381 KIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKI 427
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 80.3 bits (199), Expect = 5e-16
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 29/204 (14%)
Query: 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 60
+GL FG L F D +E+ L LA++ +A A+ +SG+L G+ +
Sbjct: 189 LGLVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAELL-GLSGILGAFLAGL---VL 244
Query: 61 ARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILL 120
+ AF E + L F + L F+ G+ + + + ++LL
Sbjct: 245 SNYAFANELSEKLEPFGY---GLFLPLFFVSVGLSLD--------LSSLLLSLLLLVLLL 293
Query: 121 YIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGL-RGAVALSLSLSVKRSSGGSS 179
+ + + +L V L +L GL +EA+I+ + GL RGAV+L+L+ +
Sbjct: 294 LVAILLGKLLGVFLLARLL-----GLSLREALIVGFGGLQRGAVSLALAAIGLQ----LG 344
Query: 180 LITSETGTLFVFFTGGIVFLTLIV 203
LI E TL V +V LT ++
Sbjct: 345 LIDRELYTLLVA----VVLLTTLL 364
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 62.2 bits (151), Expect = 8e-10
Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 23/219 (10%)
Query: 18 NDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVART-AFKGESQQSLHYF 76
+D ++EIALT+ + F A+ SGV+ V+ G+ R + ++ F
Sbjct: 205 DDPLVEIALTILAPFAGFLLAER-FHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDF 263
Query: 77 WEMVAYIANTLIFILSGVVI---------AEGILGNDKIFQNHGNSWGYLI----LLYIF 123
W ++ ++ N +IFIL GV + I N ++I F
Sbjct: 264 WSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTN--AFVIYPVMTYVRF 321
Query: 124 VQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITS 183
+ + F L FG + ++ W+GLRGA+ L+L+LS +
Sbjct: 322 LWTMKPFSNRFLKKKPMEFGT----RWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPA 377
Query: 184 ETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSA 222
VF G++ +L+V G + + + + S
Sbjct: 378 R--YELVFLAAGVILFSLLVQGISLPIFVKRKFVSEHSE 414
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.
Length = 91
Score = 46.9 bits (112), Expect = 1e-06
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 529 GVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDM 588
G ++REG ++++ +G VK + + G G +L G+P + +
Sbjct: 7 GEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEPRSATV 66
Query: 589 VTDSVVLCFFIESDKILSILRSDPA 613
V + I + L +L DP
Sbjct: 67 VALTDSELLVIPREDFLELLEQDPE 91
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and
regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms].
Length = 214
Score = 43.3 bits (102), Expect = 2e-04
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 2/150 (1%)
Query: 499 LISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIR 558
+ +PLL LP + E L L + G L+ EG + +++I +G+VK + +
Sbjct: 1 ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60
Query: 559 NKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFL 618
+ + G G +L G P + V + V I L +L P + L
Sbjct: 61 GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120
Query: 619 WQQSAIALSRILLPQIFEKLTMQDMRALIA 648
+ A L + L + L +D+ +A
Sbjct: 121 LRLLARRLRQAL--ERLSLLARKDVEERLA 148
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
Cyclic nucleotide-binding domain similar to CAP are also
present in cAMP- and cGMP-dependent protein kinases
(cAPK and cGPK) and vertebrate cyclic nucleotide-gated
ion-channels. Cyclic nucleotide-monophosphate binding
domain; proteins that bind cyclic nucleotides (cAMP or
cGMP) share a structural domain of about 120 residues;
the best studied is the prokaryotic catabolite gene
activator, CAP, where such a domain is known to be
composed of three alpha-helices and a distinctive
eight-stranded, antiparallel beta-barrel structure;
three conserved glycine residues are thought to be
essential for maintenance of the structural integrity of
the beta-barrel; CooA is a homodimeric transcription
factor that belongs to CAP family; cAMP- and
cGMP-dependent protein kinases (cAPK and cGPK) contain
two tandem copies of the cyclic nucleotide-binding
domain; cAPK's are composed of two different subunits, a
catalytic chain and a regulatory chain, which contains
both copies of the domain; cGPK's are single chain
enzymes that include the two copies of the domain in
their N-terminal section; also found in vertebrate
cyclic nucleotide-gated ion-channels.
Length = 115
Score = 38.8 bits (91), Expect = 0.002
Identities = 16/110 (14%), Positives = 37/110 (33%)
Query: 505 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLH 564
L L E L + +E +G + R+G ++++ +G V+ + +
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 565 PVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 614
G G +L P + + + + +L+ P +
Sbjct: 61 GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPEL 110
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 37.4 bits (87), Expect = 0.040
Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 42/201 (20%)
Query: 24 IALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYI 83
+AL + + A G SG+L V G+ ++ + F++ +A++
Sbjct: 225 LALAGGLLIFSLTGAIGG---SGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWL 276
Query: 84 ANTLIFILSGVVIAEGILGNDKIFQNHGNSWGY----LILLYIFVQVSRLFVVGTLYPVL 139
A L+F++ G+++ ++L + V+R V
Sbjct: 277 AQILMFLVLGLLV------------TPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPF 324
Query: 140 RNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLF---VFFTGGI 196
R +E + + W GLRGAV + L++ G E LF FF +
Sbjct: 325 R-----FNRREKLFVSWVGLRGAV--PIILAIFPMMAG-----LENARLFFNVAFF---V 369
Query: 197 VFLTLIVNGSTTQYILHLLDM 217
V ++L++ GST + L +
Sbjct: 370 VLVSLLIQGSTLPWAAKKLKV 390
>gnl|CDD|217254 pfam02861, Clp_N, Clp amino terminal domain. This short domain is
found in one or two copies at the amino terminus of ClpA
and ClpB proteins from bacteria and eukaryotes. The
function of these domains is uncertain but they may form
a protein binding site.
Length = 53
Score = 29.8 bits (68), Expect = 0.56
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 389 AHKIARQQLHDFIG-----------DSGIASVVIEESKVEGEDARKFLEDVR 429
A ++A++ H +IG D GIA+ +++++ V+ + R+ +E +
Sbjct: 1 AQELAKELGHQYIGTEHLLLALLEEDDGIAARLLKKAGVDLDALREAIEKLL 52
>gnl|CDD|224099 COG1178, ThiP, ABC-type Fe3+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 540
Score = 33.0 bits (76), Expect = 0.89
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 26/144 (18%)
Query: 45 SGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEG--ILG 102
+ +L V+ L + A R + + L + GVV+A G +L
Sbjct: 345 AALLAVV-LALLLAYAVRRL---------RSRLSRLLERLSMLPLAVPGVVLALGLLLLF 394
Query: 103 NDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLE--------------W 148
+ + LIL+ + F V +L LR LE
Sbjct: 395 RAPDGLLYQPLYTLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFR 454
Query: 149 KEAIILVWSGLRGAVALSLSLSVK 172
+ + L+ GL A AL +LS+
Sbjct: 455 RITLPLLRPGLLAAAALVFALSIG 478
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 32.5 bits (75), Expect = 1.2
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
Query: 144 YGLEWKEAIILVWSGLRGAVALSLSLSVKRSSG--GSSLITSETGTLF--VFFTGGIVFL 199
+ +E + + W GLRGAV + L+ + +G + LI F VFF +V +
Sbjct: 326 FRFNLREKLFISWVGLRGAVPIVLA-TFPMMAGLPNAQLI-------FNVVFF---VVLV 374
Query: 200 TLIVNGSTTQYILHLLDMD 218
+L++ G+T + L +
Sbjct: 375 SLLLQGTTLPWAARKLGVV 393
>gnl|CDD|236587 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B'';
Validated.
Length = 494
Score = 31.8 bits (73), Expect = 1.7
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 385 AFLRAHKIARQQL---HDFIGDSGIASVVIEESKVEGEDARKF---LEDVRVNFPQV 435
A+ + H++ R + +DF+ D+G+ ++ E+ +E E L +RV P V
Sbjct: 11 AYFKEHRLVRHHIDSYNDFV-DNGLQKIIDEQGPIETEIEDGVYVELGKIRVGKPVV 66
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 31.3 bits (71), Expect = 2.0
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 206 STTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIR 265
S + YI+ LLD++ + + Y +E L++ K F D P+ T+K +
Sbjct: 58 SESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSF-- 115
Query: 266 CLNDLEGVPMHPHSASETGDSLDPTNL 292
L+GV H H L P NL
Sbjct: 116 MYQLLKGV-AHCHKHGVMHRDLKPQNL 141
>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase.
Length = 394
Score = 31.6 bits (72), Expect = 2.1
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 569 HGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSR 628
H +Y+ KP M+ +T+ LC F+ ++ ++LR+ P + + + ++A L
Sbjct: 116 HAEQPNVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPELRELVGSEAADQLLA 175
Query: 629 I 629
+
Sbjct: 176 L 176
>gnl|CDD|212104 cd10792, GH57N_AmyC_like, N-terminal catalytic domain of
alpha-amylase ( AmyC ) and similar proteins.
Alpha-amylases (alpha-1,4-glucan-4-glucanohydrolases, EC
3.2.1.1) play essential roles in alpha-glucan metabolism
by catalyzing the hydrolysis of polysaccharides such as
amylose starch, and beta-limit dextrin. This subfamily
is represented by a novel alpha-amylase (AmyC) encoded
by hyperthermophilic organism Thermotoga maritime ORF
tm1438, and its prokaryotic homologs. AmyC functions as
a homotetramer and shows thermostable amylolytic
activity. It is strongly inhibited by acarbose. AmyC is
composed of a N-terminal catalytic domain, containing a
distorted TIM-barrel structure with a characteristic
(beta/alpha)7 fold motif, and two additional less
conserved domains. There are other two canonical
alpha-amylases encoded from T. maritime that lack the
sequence similarity to AmyC, and belong to a different
superfamily.
Length = 412
Score = 31.3 bits (72), Expect = 2.6
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 504 PLLRELPPSVREPLELSTKEIMKLSGVTLYRE--GSKPSGIWL 544
PL ++ P +VR +E GV YR G KP GIWL
Sbjct: 152 PLYQDYPEAVRAQIET---------GVRSYRRHFGRKPRGIWL 185
>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family.
This group contains proteins related to the
zinc-dependent alcohol dehydrogenases. However, while
the group has structural zinc site characteristic of
these enzymes, it lacks the consensus site for a
catalytic zinc. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site, and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine,
the ribose of NAD, a serine, then the alcohol, which
allows the transfer of a hydride to NAD+, creating NADH
and a zinc-bound aldehyde or ketone. In yeast and some
bacteria, the active site zinc binds an aldehyde,
polarizing it, and leading to the reverse reaction.
Length = 342
Score = 30.7 bits (70), Expect = 3.4
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 656 CLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPAA-LIPSQGNLSFRSAETSGVEAVS 714
CL G C + + G G E + PA L+P NLSF A A
Sbjct: 99 CLAGR----ENLCAQYGILGE-HVDGGYAEYVAVPARNLLPIPDNLSFEEA-----AAAP 148
Query: 715 FSHQGSCYLVETRARV 730
+ + +++ TRAR+
Sbjct: 149 LTFLTAWHMLVTRARL 164
>gnl|CDD|165252 PHA02942, PHA02942, putative transposase; Provisional.
Length = 383
Score = 30.8 bits (69), Expect = 3.6
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 638 LTMQDMRALIAERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITP 689
+ ++D++ LI + +K+ R ++ + YH I + +E K HG+ E + P
Sbjct: 270 IKLEDLKNLIKDVNKLPAEFRDKLYLMQYHRIQYWIEWQAKKHGMIVEFVNP 321
>gnl|CDD|206455 pfam14287, DUF4368, Domain of unknown function (DUF4368). This
domain family is found in bacteria, and is approximately
70 amino acids in length. The family is found in
association with pfam00239 and pfam07508. There is a
single completely conserved residue G that may be
functionally important.
Length = 71
Score = 27.5 bits (62), Expect = 5.2
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 411 IEESKVEGEDARKFLEDVR--VNFPQVLHVVKTRQVTYSVLNHLID--YIQNLEKVG 463
+ E + + DA +FL VR + ++T ++LN ++ + +K G
Sbjct: 3 LSEYEQQTVDADRFLALVRKYTDIE---------ELTPTMLNEFVEKIEVHEADKKG 50
>gnl|CDD|237703 PRK14400, PRK14400, membrane protein; Provisional.
Length = 201
Score = 29.4 bits (66), Expect = 5.8
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 131 VVGTLYPVLRNF--GYGLEWKEAIILV---WSGLRGAVALSLSLSVKRSSGGSSLITSET 185
VG LYPV F G G+ I LV W+ L GAV +++ + R S SL +
Sbjct: 97 FVGHLYPVWLGFKGGKGVATGLGIFLVLAPWAALAGAVGYAVAYGLTRISSVGSLTGTAL 156
Query: 186 GTLFVFFTGG 195
F T G
Sbjct: 157 CVAGGFATYG 166
>gnl|CDD|135428 PRK05529, PRK05529, cell division protein FtsQ; Provisional.
Length = 255
Score = 29.5 bits (66), Expect = 7.8
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 475 DAVQSDLKRLLRNP-PLVKFPKISDLISAHPLLREL-----PPSV-------REPLEL-- 519
+ + L+ P PLV + ++A PL+R PP R PL
Sbjct: 77 QDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGTIVVRVVERVPLAFIQ 136
Query: 520 --STKEIMKLSGVTLYREGSKPSGIWLI 545
++ +GV++ ++P G+ LI
Sbjct: 137 RGDGFHVVDAAGVSIKVTQARPLGMPLI 164
>gnl|CDD|218514 pfam05231, MASE1, MASE1. Predicted integral membrane sensory
domain found in histidine kinases, diguanylate cyclases
and other bacterial signaling proteins. This entry also
includes members of the 8 transmembrane UhpB type
(8TMR-UT) domain family.
Length = 298
Score = 29.3 bits (66), Expect = 8.6
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 15/139 (10%)
Query: 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAV 60
+ G+A +L LG + E LT + +GVL + L +
Sbjct: 122 LLAIIGLALLLLLGLLPLAPFAESWLTWWLG-----------SATGVLVLAPLLLLL--- 167
Query: 61 ARTAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILL 120
R + + L + L +++ +L + GYL+L
Sbjct: 168 -RRYLRQRHRLPLWPELLLAPVALKLLHLFWLLLLLILSLLLQLLLPPELNYFLGYLLLP 226
Query: 121 YIFVQVSRLFVVGTLYPVL 139
+ R G L
Sbjct: 227 PLLWAAFRFGWQGAALATL 245
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,764,851
Number of extensions: 4716271
Number of successful extensions: 4265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4242
Number of HSP's successfully gapped: 67
Length of query: 914
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 808
Effective length of database: 6,236,078
Effective search space: 5038751024
Effective search space used: 5038751024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.4 bits)