RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002506
(914 letters)
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 47.4 bits (112), Expect = 6e-07
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 493 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 552
F + L++A PL ++L P+V + + + +G + R G ++ + G V
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65
Query: 553 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 612
G+ G ++ G+P + + + V + S + S P
Sbjct: 66 A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118
Query: 613 AVEDFLWQQSA 623
+ + + +
Sbjct: 119 EIAEIFRKTAL 129
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 45.6 bits (107), Expect = 4e-06
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 5/145 (3%)
Query: 479 SDLKRLLRNPPLVKFPK----ISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYR 534
++ L PL + + I + + P++ + L G+TL+R
Sbjct: 1 AEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFR 60
Query: 535 EGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLI-GKPYMSDMVTDSV 593
+G + + + G + + + T G E ++ P + +VT
Sbjct: 61 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRES 120
Query: 594 VLCFFIESDKILSILRSDPAVEDFL 618
IE + ++ L
Sbjct: 121 SELLRIEQEDFKALWEKYRQYMAGL 145
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 43.2 bits (101), Expect = 2e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 495 KISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTS 554
++ I + L L + R + + + ++G T+ ++G + ++I G +
Sbjct: 17 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDV-- 74
Query: 555 KSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 612
+ G + G ++ G P + + + V + I+ D IL
Sbjct: 75 ---YVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 129
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 41.3 bits (96), Expect = 8e-05
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 498 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI 557
+ +S +L L R + + + + G + +G ++I G +
Sbjct: 2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 61
Query: 558 RNKHSLHPV-FTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAV 614
N+ + G +L+ +P + +V + C ++ + +L +
Sbjct: 62 ENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDI 119
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 37.9 bits (87), Expect = 0.002
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 498 DLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSI 557
I + P L+ L S R + + G + +G +++ +G V+ T K
Sbjct: 2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRK 61
Query: 558 RNKHSLHP------VFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSD 611
G G ++ KP + V C ++ +L
Sbjct: 62 GKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPC 121
Query: 612 PAV 614
+
Sbjct: 122 MEI 124
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 35.9 bits (82), Expect = 0.005
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)
Query: 496 ISDLISAHPLLRELPPSVREPLELSTKEIMKLS-GVTLYREGSKPSGIWLISNGVVKWTS 554
I D + L L +V+ L G L+ +G + + ++I G V
Sbjct: 8 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV---- 63
Query: 555 KSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDS-VVLCFFIESDKILSILRSDPA 613
+ + G + G ++ P + +V ++ + ILR A
Sbjct: 64 NVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA 123
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 26.4 bits (58), Expect = 4.6
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 425 LEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRL 484
LE ++ P + + S+L +I+ LE +++ +H D +Q + + L
Sbjct: 20 LEKLKGLVPLGPDSSRHTTL--SLLTKAKLHIKKLED----SDRKAVHQIDQLQREQRHL 73
Query: 485 LR 486
R
Sbjct: 74 KR 75
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 26.5 bits (59), Expect = 4.6
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 440 KTRQVTYSVLNH--LIDYIQNLEKVGLLEEKE 469
KTR + + L++ YI+ L + ++ ++
Sbjct: 21 KTRIMYGANLSYALTGRYIKMLMDLEIIRQEG 52
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
[TaxId: 562]}
Length = 444
Score = 27.9 bits (61), Expect = 6.3
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 1 MGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTL 53
+G G A + +F +E A A A ++G++ V+ +
Sbjct: 347 LGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM 399
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus
nivalis) [TaxId: 4670]}
Length = 108
Score = 26.1 bits (57), Expect = 8.6
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 544 LISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDK 603
L W + + S NL +Y + S+ + ++ D+
Sbjct: 33 LYDVDKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDR 92
Query: 604 ILSILRSDPAVEDFLWQ 620
+ ++ W
Sbjct: 93 NV-VIYGTD-----RWA 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0430 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,280,707
Number of extensions: 153474
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 12
Length of query: 914
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 820
Effective length of database: 1,116,976
Effective search space: 915920320
Effective search space used: 915920320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)