Query 002507
Match_columns 914
No_of_seqs 560 out of 4103
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 16:54:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002507.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1225-1228//hhsearch_pdb/002507hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 402.2 14.3 262 597-875 22-305 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 397.2 19.0 258 604-878 44-321 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 394.3 14.6 257 603-876 15-289 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 383.6 19.1 257 604-876 39-300 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 381.3 15.1 263 600-878 63-349 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 369.3 14.7 248 603-869 26-276 (350)
7 3hmm_A TGF-beta receptor type- 1.0 1 1 368.8 19.2 269 603-878 5-299 (303)
8 4fie_A Serine/threonine-protei 1.0 1 1 366.2 20.6 247 603-869 153-400 (423)
9 4fih_A Serine/threonine-protei 1.0 1 1 365.9 20.2 247 603-869 76-323 (346)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 364.4 22.1 252 604-877 61-317 (336)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=402.22 Aligned_cols=262 Identities=26% Similarity=0.442 Sum_probs=214.7
Q ss_pred HHHHHHHHHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCC-CCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf 999987543140202075799999986------998999999405899-8912336899998730254031687676429
Q 002507 597 EIVDITNNFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEAQLLMRVHHRNLASLVGYCNDG 669 (914)
Q Consensus 597 el~~~t~~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~-~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~ 669 (914)
++...+.+|.+.||+|+||+||+|.+. +++.||||+++.... ...++|.+|+.++++++|||||+++|+|.+.
T Consensus 22 ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~ 101 (308)
T 4gt4_A 22 EISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD 101 (308)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 28788885866913588848999998577658888699999988014968999999999999858998987736499889
Q ss_pred CEEEEEEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE
Q ss_conf 90899997345788123310012--------------3468968799999999999999871699992420464430786
Q 002507 670 GNVGLVYEYMAYGNLKQYLFDET--------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILL 735 (914)
Q Consensus 670 ~~~~LV~E~~~~gsL~~~L~~~~--------------~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILl 735 (914)
+..++|||||++|+|.++|.... ...++|..++.++.|+|.||.||| +++|+||||||+|||+
T Consensus 102 ~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl 178 (308)
T 4gt4_A 102 QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLV 178 (308)
T ss_dssp SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCEEE
T ss_conf 9889999818999499999862765433332211112468999999999999999999998---6899778736230688
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCC
Q ss_conf 8898399960377533578888743216546876548101146999933579999999999991-999753587863100
Q 002507 736 NEKMQAKLADFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIV 814 (914)
Q Consensus 736 d~~~~vkI~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~~~ 814 (914)
++++.+||+|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||.... ...+.
T Consensus 179 ~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~-~~~~~ 257 (308)
T 4gt4_A 179 YDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS-NQDVV 257 (308)
T ss_dssp CGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-HHHHH
T ss_pred CCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-HHHHH
T ss_conf 79997898876020233677740473451257765698998279999630001579999999968999999989-99999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1323322358743233621015889268999999998429999999999999999999988
Q 002507 815 NRVCPFLERGDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCL 875 (914)
Q Consensus 815 ~~v~~~~~~~~l~~i~D~~l~~~~~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~ 875 (914)
+.+ ..+.. ...+.++...+.+++.+||+.+|++||+|.||++.|+...
T Consensus 258 ~~i----~~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 258 EMI----RNRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHH----HTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHH----HCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 999----81998---------9996203699999999975879657929999999998531
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.16 Aligned_cols=258 Identities=27% Similarity=0.438 Sum_probs=214.0
Q ss_pred HHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 43140202075799999986------998999999405899891233689999873025403168767642990899997
Q 002507 604 NFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYE 677 (914)
Q Consensus 604 ~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E 677 (914)
.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+.+..++|||
T Consensus 44 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E 123 (329)
T 4aoj_A 44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 123 (329)
T ss_dssp EEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 88779714778489989987866577896999999775797999999999999985899899969899998998999998
Q ss_pred ECCCCCHHHHHHCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEE
Q ss_conf 345788123310012-------------3468968799999999999999871699992420464430786889839996
Q 002507 678 YMAYGNLKQYLFDET-------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLA 744 (914)
Q Consensus 678 ~~~~gsL~~~L~~~~-------------~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~ 744 (914)
||++|+|.++++... ...++|.+++.++.|+|.||.||| +++|+||||||+|||++.++.+||+
T Consensus 124 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~ 200 (329)
T 4aoj_A 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIG 200 (329)
T ss_dssp CCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEEC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCCEECCCCCHHHEEECCCCCEEEC
T ss_conf 2799939999986075410012211245788999999999999999999984---0884226666764898899968976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0377533578888743216546876548101146999933579999999999991-999753587863100132332235
Q 002507 745 DFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVNRVCPFLER 823 (914)
Q Consensus 745 DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~~~~~v~~~~~~ 823 (914)
|||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||..... ......+ ..
T Consensus 201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-~~~~~~i----~~ 275 (329)
T 4aoj_A 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-TEAIDCI----TQ 275 (329)
T ss_dssp CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH-HHHHHHH----HH
T ss_pred CCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH-HHHHHHH----HC
T ss_conf 660333656787530047645565665826544799996630010578999998289999999899-9999999----80
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8743233621015889268999999998429999999999999999999988657
Q 002507 824 GDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 878 (914)
Q Consensus 824 ~~l~~i~D~~l~~~~~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~~~ 878 (914)
+. ....+..+...+.+++.+||+.+|++||+|.||++.|+.+.+..
T Consensus 276 g~---------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 276 GR---------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp TC---------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred CC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 89---------89986446399999999974759657929999999999874588
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=394.33 Aligned_cols=257 Identities=28% Similarity=0.455 Sum_probs=212.0
Q ss_pred HHHCCEECEECCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 543140202075799999986------99899999940589989123368999987302540316876764299089999
Q 002507 603 NNFHRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVY 676 (914)
Q Consensus 603 ~~f~~~LG~G~fG~Vyka~~~------~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~ 676 (914)
+.+.+.||+|+||+||+|.+. ++..||||+++.......++|.+|++++++++|||||+++|+|.+.+..++||
T Consensus 15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~ 94 (299)
T 4asz_A 15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVF 94 (299)
T ss_dssp EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 29824982078829999998776667788799999967778589999999999998589988862879995699899999
Q ss_pred EECCCCCHHHHHHCCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEEC
Q ss_conf 7345788123310012-----------34689687999999999999998716999924204644307868898399960
Q 002507 677 EYMAYGNLKQYLFDET-----------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLAD 745 (914)
Q Consensus 677 E~~~~gsL~~~L~~~~-----------~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~D 745 (914)
|||++|+|.++++... ...++|..++.++.|+|.||.||| +++|+||||||+|||++.++.+||+|
T Consensus 95 Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~D 171 (299)
T 4asz_A 95 EYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGD 171 (299)
T ss_dssp ECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECC
T ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEECC
T ss_conf 858999689999860864211123577788999999999999999999997---59904676577638987998689887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 377533578888743216546876548101146999933579999999999991-9997535878631001323322358
Q 002507 746 FGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVNRVCPFLERG 824 (914)
Q Consensus 746 FGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~~~~~v~~~~~~~ 824 (914)
||+++...............||+.|||||++.+..++.++|||||||++|||+| |+.||..... ..+...+ ..+
T Consensus 172 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-~~~~~~i----~~~ 246 (299)
T 4asz_A 172 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-NEVIECI----TQG 246 (299)
T ss_dssp CSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-HHHHHHH----HHT
T ss_pred CCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHHH----HCC
T ss_conf 30010067887416647513470103889870799970366778899999998089999999899-9999999----808
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 7432336210158892689999999984299999999999999999999886
Q 002507 825 DVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLE 876 (914)
Q Consensus 825 ~l~~i~D~~l~~~~~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~ 876 (914)
.. ...+..+...+.+++.+||+.+|++||+|.||++.|+++.+
T Consensus 247 ~~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 247 RV---------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp CC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 98---------89974143999999999768796689299999999987776
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=383.56 Aligned_cols=257 Identities=30% Similarity=0.491 Sum_probs=205.5
Q ss_pred HHCCEECEECCEEEEEEEECCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 43140202075799999986998999999405899--8912336899998730254031687676429908999973457
Q 002507 604 NFHRILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 681 (914)
Q Consensus 604 ~f~~~LG~G~fG~Vyka~~~~g~~VAVK~l~~~~~--~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 681 (914)
.+.+.||+|+||+||+|++. ..||||+++.... +..+.|.+|+.++++++|||||+++|+|.+ +..++|||||++
T Consensus 39 ~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 39 MLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp CEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred EEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEECCCC
T ss_conf 98449820888689999989--968999997268999999999999999985899887469999978-958999974899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88123310012346896879999999999999987169999242046443078688983999603775335788887432
Q 002507 682 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 761 (914)
Q Consensus 682 gsL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 761 (914)
|+|.++++.. ...++|..++.|+.|+|.||+||| +++|+||||||+|||+++++.+||+|||+|+...........
T Consensus 116 GsL~~~l~~~-~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~ 191 (307)
T 3omv_A 116 SSLYKHLHVQ-ETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQV 191 (307)
T ss_dssp CBHHHHHHTS-CCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC----------
T ss_pred CCHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCEEE
T ss_conf 8788987524-899999999999999999999997---799527855789978889990899441575424667764031
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 16546876548101146---999933579999999999991999753587863100132332235874323362101588
Q 002507 762 TSIVGTVGYLDPEYYAS---NRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANF 838 (914)
Q Consensus 762 ~~~~gt~~y~APE~l~~---~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~~v~~~~~~~~l~~i~D~~l~~~~ 838 (914)
....||+.|||||++.+ ..++.++|||||||++|||+||+.||........+...+.. +. ..|.+ ...
T Consensus 192 ~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~----~~----~~p~~-~~~ 262 (307)
T 3omv_A 192 EQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGR----GY----ASPDL-SKL 262 (307)
T ss_dssp --CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHT----TC----CCCCS-TTS
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC----CC----CCCCC-CCC
T ss_conf 5644687724987861468998786877572899999999788998999969999999965----88----88872-003
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 92689999999984299999999999999999999886
Q 002507 839 DTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLE 876 (914)
Q Consensus 839 ~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~ 876 (914)
..++...+.+++.+||+.+|++||+|.||++.|+.+..
T Consensus 263 ~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 263 YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp CTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 54456999999999757797689098999999999745
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=381.29 Aligned_cols=263 Identities=26% Similarity=0.431 Sum_probs=211.1
Q ss_pred HHHHHHCCEECEECCEEEEEEEECC------CCEEEEEEEECCCCC-CCHHHHHHHHHHHHCCC-CEEEEEEEEEECC-C
Q ss_conf 9875431402020757999999869------989999994058998-91233689999873025-4031687676429-9
Q 002507 600 DITNNFHRILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQ-GPKQFRTEAQLLMRVHH-RNLASLVGYCNDG-G 670 (914)
Q Consensus 600 ~~t~~f~~~LG~G~fG~Vyka~~~~------g~~VAVK~l~~~~~~-~~~~f~~Ei~~L~~l~H-~NIv~l~g~~~~~-~ 670 (914)
...+.+.+.||+|+||+||+|.+.. ++.||||+++..... ..+.|.+|+.++.+++| ||||+++|+|.+. .
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCC
T ss_conf 79959820982178959999998688854477599999976235868999999999999975799848778899994697
Q ss_pred EEEEEEEECCCCCHHHHHHCCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEC
Q ss_conf 0899997345788123310012--------------34689687999999999999998716999924204644307868
Q 002507 671 NVGLVYEYMAYGNLKQYLFDET--------------KEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLN 736 (914)
Q Consensus 671 ~~~LV~E~~~~gsL~~~L~~~~--------------~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld 736 (914)
..++|||||++|+|.++|+... ...+++..++.++.|+|.||.||| +++|+||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCCCCEEEC
T ss_conf 799999838989799999743566654333410110356899999999999999987676---27843574672113057
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCC
Q ss_conf 898399960377533578888743216546876548101146999933579999999999991-9997535878631001
Q 002507 737 EKMQAKLADFGFSKIFPAESESHISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELIT-GLPAIIRGYNNTHIVN 815 (914)
Q Consensus 737 ~~~~vkI~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELlt-G~~p~~~~~~~~~~~~ 815 (914)
.++.+||+|||+|+...............||+.|||||++.+..++.++|||||||++|||+| |+.||........+..
T Consensus 220 ~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~ 299 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR 299 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH
T ss_pred CCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99978979654322245688720325401466656989994699997553740689999998189999999898999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 323322358743233621015889268999999998429999999999999999999988657
Q 002507 816 RVCPFLERGDVRSIVDPRLEANFDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 878 (914)
Q Consensus 816 ~v~~~~~~~~l~~i~D~~l~~~~~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~~~ 878 (914)
.+..+. ....+......+.+++.+||+.+|++||+|.||++.|+.+++..
T Consensus 300 ----~i~~g~---------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 300 ----RLKEGT---------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp ----HHHHTC---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred ----HHHCCC---------CCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf ----997389---------88888657899999999976869667939999999999999875
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=369.28 Aligned_cols=248 Identities=23% Similarity=0.363 Sum_probs=203.6
Q ss_pred HHHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCC--CCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEC
Q ss_conf 543140202075799999986-9989999994058998--9123368999987302540316876764299089999734
Q 002507 603 NNFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ--GPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYM 679 (914)
Q Consensus 603 ~~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~--~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~ 679 (914)
|.+.+.||+|+||+||+|+.. +|+.||||+++..... ....+.+|+.+++.++|||||++++++.+.+..++|||||
T Consensus 26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~ 105 (350)
T 4b9d_A 26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC 105 (350)
T ss_dssp EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 58847970277939999998899989999998658789799999999999998779989891999999899999999488
Q ss_pred CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 57881233100123468968799999999999999871699992420464430786889839996037753357888874
Q 002507 680 AYGNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESH 759 (914)
Q Consensus 680 ~~gsL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~ 759 (914)
++|+|.+++.......+++.....++.|++.||.||| +++|+||||||+|||++.++.+||+|||+++.+... ..
T Consensus 106 ~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--~~ 180 (350)
T 4b9d_A 106 EGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST--VE 180 (350)
T ss_dssp TTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH--HH
T ss_pred CCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCC--CC
T ss_conf 9983999999738999978999999999999999999---899151359789979878999897646521440688--54
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32165468765481011469999335799999999999919997535878631001323322358743233621015889
Q 002507 760 ISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFD 839 (914)
Q Consensus 760 ~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~~v~~~~~~~~l~~i~D~~l~~~~~ 839 (914)
.....+||+.|||||++.+..++.++|||||||++|||++|+.||..... ..+...+ ..+... ..+
T Consensus 181 ~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-~~~~~~i----~~~~~~---------~~~ 246 (350)
T 4b9d_A 181 LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-KNLVLKI----ISGSFP---------PVS 246 (350)
T ss_dssp HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHH----HHTCCC---------CCC
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHH----HCCCCC---------CCC
T ss_conf 10145788360399998799989599999999999999978799899699-9999999----808999---------997
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 268999999998429999999999999999
Q 002507 840 TNSVWKVAETAMECVPSISFQRPTMSHVVT 869 (914)
Q Consensus 840 ~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~ 869 (914)
......+.+++.+|+..+|++||++.|+++
T Consensus 247 ~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 247 LHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 557999999999985589667908999963
No 7
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=368.78 Aligned_cols=269 Identities=23% Similarity=0.352 Sum_probs=201.4
Q ss_pred HHHCCEECEECCEEEEEEEECCCCEEEEEEEECCCCCCCHHH--HHHHHHHHHCCCCEEEEEEEEEECCC----EEEEEE
Q ss_conf 543140202075799999986998999999405899891233--68999987302540316876764299----089999
Q 002507 603 NNFHRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQF--RTEAQLLMRVHHRNLASLVGYCNDGG----NVGLVY 676 (914)
Q Consensus 603 ~~f~~~LG~G~fG~Vyka~~~~g~~VAVK~l~~~~~~~~~~f--~~Ei~~L~~l~H~NIv~l~g~~~~~~----~~~LV~ 676 (914)
+-+.+.||+|+||+||+|++ +|+.||||+++... .+.+ ..|+..+..++||||++++|+|.+.+ ..++||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 99978984089939999999-99899999988313---366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEECCCCCEEEECCCCCEEEECCCCCCC
Q ss_conf 7345788123310012346896879999999999999987169-----99924204644307868898399960377533
Q 002507 677 EYMAYGNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGC-----KPPIIHRDVKTANILLNEKMQAKLADFGFSKI 751 (914)
Q Consensus 677 E~~~~gsL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~-----~~~iiH~DLKp~NILld~~~~vkI~DFGla~~ 751 (914)
|||++|+|.++++. ..++|..+++++.|++.||+|||+.+ .++|+||||||+|||++.++.+||+|||+++.
T Consensus 81 Ey~~~gsL~~~l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 17899968999975---799989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCC---
Q ss_conf 57888874--32165468765481011469------999335799999999999919997535878631001-3233---
Q 002507 752 FPAESESH--ISTSIVGTVGYLDPEYYASN------RLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVN-RVCP--- 819 (914)
Q Consensus 752 ~~~~~~~~--~~~~~~gt~~y~APE~l~~~------~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~-~v~~--- 819 (914)
........ ......||+.|||||++.+. .++.++|||||||++|||+||++|+....+...... ....
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred --CCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --223587432336210158-89268999999998429999999999999999999988657
Q 002507 820 --FLERGDVRSIVDPRLEAN-FDTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEME 878 (914)
Q Consensus 820 --~~~~~~l~~i~D~~l~~~-~~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~~~ 878 (914)
.+.........+|.+... ...+....+.+++.+||+.+|++||||.||++.|+++.+.+
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999987502579988765566589999999999976059757959999999999889875
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=366.18 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=203.7
Q ss_pred HHHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 543140202075799999986-9989999994058998912336899998730254031687676429908999973457
Q 002507 603 NNFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 681 (914)
Q Consensus 603 ~~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 681 (914)
+.+.+.||+|+||.||+|... +|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..++|||||++
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38616962481848999999999989999998625546899999999999857998987168999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88123310012346896879999999999999987169999242046443078688983999603775335788887432
Q 002507 682 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 761 (914)
Q Consensus 682 gsL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 761 (914)
|+|.+++.. ..+++.....++.|++.||+||| +++|+||||||+|||++.++.+||+|||+|+.+... ....
T Consensus 233 G~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 304 (423)
T 4fie_A 233 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 304 (423)
T ss_dssp EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSS--CCCB
T ss_pred CCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 828988761---69899999999999999999999---889044657877789858999898037265477788--7643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 16546876548101146999933579999999999991999753587863100132332235874323362101588926
Q 002507 762 TSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFDTN 841 (914)
Q Consensus 762 ~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~~v~~~~~~~~l~~i~D~~l~~~~~~e 841 (914)
...+||+.|||||++.+..++.++|||||||++|||++|+.||..... ......+. .+. .+.+. ....
T Consensus 305 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~~i~----~~~-----~~~~~--~~~~ 372 (423)
T 4fie_A 305 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAMKMIR----DNL-----PPRLK--NLHK 372 (423)
T ss_dssp CCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHH----HSC-----CCCCS--CTTS
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH----CCC-----CCCCC--CCCC
T ss_conf 466647472799997799999689999999999999978799898699-99999997----279-----98876--5012
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 8999999998429999999999999999
Q 002507 842 SVWKVAETAMECVPSISFQRPTMSHVVT 869 (914)
Q Consensus 842 ~~~~l~~Li~~Cl~~~P~~RPsm~eVl~ 869 (914)
....+.+++.+||..+|++||++.|+++
T Consensus 373 ~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 373 VSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986789568909999960
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=365.93 Aligned_cols=247 Identities=22% Similarity=0.318 Sum_probs=203.7
Q ss_pred HHHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCC
Q ss_conf 543140202075799999986-9989999994058998912336899998730254031687676429908999973457
Q 002507 603 NNFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAY 681 (914)
Q Consensus 603 ~~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~ 681 (914)
+++.+.||+|+||.||+|... +|+.||||++........+.+.+|+.+++.++|||||++++++.+.+..++|||||++
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred CEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38707960272829999999899989999998527656899999999999867998999199999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88123310012346896879999999999999987169999242046443078688983999603775335788887432
Q 002507 682 GNLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKMQAKLADFGFSKIFPAESESHIS 761 (914)
Q Consensus 682 gsL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~~vkI~DFGla~~~~~~~~~~~~ 761 (914)
|+|.+++.. ..+++.....++.|++.||+||| +++|+||||||+|||++.++.+||+|||+++.+... ....
T Consensus 156 g~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--~~~~ 227 (346)
T 4fih_A 156 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--VPRR 227 (346)
T ss_dssp EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS--SCCB
T ss_pred CCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC--CCCC
T ss_conf 808999871---89899999999999999999999---888355627889978879998899027575366788--7753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 16546876548101146999933579999999999991999753587863100132332235874323362101588926
Q 002507 762 TSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANFDTN 841 (914)
Q Consensus 762 ~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~~v~~~~~~~~l~~i~D~~l~~~~~~e 841 (914)
...+||+.|||||++.+..++.++||||+||++|||++|++||..... ......+. .+. .+.+. ....
T Consensus 228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-~~~~~~i~----~~~-----~~~~~--~~~~ 295 (346)
T 4fih_A 228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-LKAMKMIR----DNL-----PPRLK--NLHK 295 (346)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-HHHHHHHH----HSS-----CCCCS--CGGG
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHH----CCC-----CCCCC--CCCC
T ss_conf 465627582799997799999689999999999999978799898599-99999997----179-----99887--5022
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 8999999998429999999999999999
Q 002507 842 SVWKVAETAMECVPSISFQRPTMSHVVT 869 (914)
Q Consensus 842 ~~~~l~~Li~~Cl~~~P~~RPsm~eVl~ 869 (914)
....+.+++.+|+..+|++||++.|+++
T Consensus 296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 296 VSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999999986799568909999960
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=364.40 Aligned_cols=252 Identities=21% Similarity=0.286 Sum_probs=203.8
Q ss_pred HHCCEECEECCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEECCCC
Q ss_conf 43140202075799999986-99899999940589989123368999987302540316876764299089999734578
Q 002507 604 NFHRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEAQLLMRVHHRNLASLVGYCNDGGNVGLVYEYMAYG 682 (914)
Q Consensus 604 ~f~~~LG~G~fG~Vyka~~~-~g~~VAVK~l~~~~~~~~~~f~~Ei~~L~~l~H~NIv~l~g~~~~~~~~~LV~E~~~~g 682 (914)
.+.++||+|+||.||+|+.. +|+.||||+++... ...+|+.+++.++|||||++++++.+.+..++|||||++|
T Consensus 61 ~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg 135 (336)
T 4g3f_A 61 THQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG 135 (336)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred EECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-----HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCC
T ss_conf 76868513878099999988999899999978888-----6999999998579989993999999899999999665998
Q ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCC-CEEEECCCCCCCCCCCCCCC--
Q ss_conf 812331001234689687999999999999998716999924204644307868898-39996037753357888874--
Q 002507 683 NLKQYLFDETKEALSWKDRLQIAVDAAQGLEYLHHGCKPPIIHRDVKTANILLNEKM-QAKLADFGFSKIFPAESESH-- 759 (914)
Q Consensus 683 sL~~~L~~~~~~~ls~~~~~~ia~qia~gL~yLH~~~~~~iiH~DLKp~NILld~~~-~vkI~DFGla~~~~~~~~~~-- 759 (914)
+|.+++.. .+.+++.....++.|++.||.||| +++|+||||||+|||++.++ .+||+|||+++.+.......
T Consensus 136 ~L~~~l~~--~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~ 210 (336)
T 4g3f_A 136 SLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSL 210 (336)
T ss_dssp BHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---------
T ss_pred CHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHH---HCCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCCCE
T ss_conf 69999987--699999999999999999999999---8890426167788799589997999627877685678765402
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -3216546876548101146999933579999999999991999753587863100132332235874323362101588
Q 002507 760 -ISTSIVGTVGYLDPEYYASNRLTEKSDVYSFGIVLLELITGLPAIIRGYNNTHIVNRVCPFLERGDVRSIVDPRLEANF 838 (914)
Q Consensus 760 -~~~~~~gt~~y~APE~l~~~~~s~ksDVwSlGviL~ELltG~~p~~~~~~~~~~~~~v~~~~~~~~l~~i~D~~l~~~~ 838 (914)
.....+||+.|||||++.+..++.++|||||||++|||++|+.||....... +...+ ..+.. .+ ...
T Consensus 211 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~i----~~~~~------~~-~~~ 278 (336)
T 4g3f_A 211 LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP-LCLKI----ASEPP------PI-REI 278 (336)
T ss_dssp ---CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC-CHHHH----HHSCC------GG-GGS
T ss_pred ECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHH----HCCCC------CC-HHC
T ss_conf 21785455802008999889998908999999999999997869989989999-99999----80899------80-025
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 926899999999842999999999999999999998865
Q 002507 839 DTNSVWKVAETAMECVPSISFQRPTMSHVVTELKKCLEM 877 (914)
Q Consensus 839 ~~e~~~~l~~Li~~Cl~~~P~~RPsm~eVl~~L~~~~~~ 877 (914)
+......+.+++.+|+..+|++||++.|+++.|...+..
T Consensus 279 ~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 279 PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 866799999999997628976895999999999999754
Done!