BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002508
(914 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 78/94 (82%)
Query: 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCI 876
+ +D +I++W++GK GNIR+LL+T+QY+LW SGW+PV L D+I AV+K Y++A L +
Sbjct: 9 KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68
Query: 877 HPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 910
HPDK+QQKGA+ QKY+AEKVF+LL+EAW+ FN+
Sbjct: 69 HPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 10/117 (8%)
Query: 801 RDLQAQRDQAE--RHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPV 854
+D + R AE + +A+ +D E I W GKE NIRALL+TM VLW E+ W+PV
Sbjct: 64 KDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPV 123
Query: 855 SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
+ DL+T VKK YRKA L +HPDK G +Q A+ +F L +AW++F ++
Sbjct: 124 GMADLVTPEQVKKVYRKAVLVVHPDKAT--GQPYEQ--YAKMIFMELNDAWSEFENQ 176
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 8/107 (7%)
Query: 809 QAERHRIAETLDVE---IKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAA 864
+ + +A+ +D E I W GKE NIRALL+TM VLW E+ W+PV + DL+T
Sbjct: 6 EMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQ 65
Query: 865 VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
VKK YRKA L +HPDK G +Q A+ +F L +AW++F ++
Sbjct: 66 VKKVYRKAVLVVHPDKA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 108
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 79.3 bits (194), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
++I W GKE NIRALL+TM VLW E+ W+PV + DL+T VKK YRKA L +HP
Sbjct: 6 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 65
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
K G +Q A+ +F L +AW++F ++
Sbjct: 66 KA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 93
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
++I W GKE NIRALL+TM VLW E+ W+PV + DL+T VKK YRKA L +HP
Sbjct: 5 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPC 64
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
K G +Q A+ +F L +AW++F ++
Sbjct: 65 KA--TGQPYEQ--YAKMIFMELNDAWSEFENQ 92
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 821 VEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPD 879
++I W GKE NIRALL+T VLW E+ W+PV DL+T VKK YRKA L +HPD
Sbjct: 8 LKILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPD 67
Query: 880 KVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911
K G +Q A+ +F L +AW++F ++
Sbjct: 68 KA--TGQPYEQ--YAKXIFXELNDAWSEFENQ 95
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 861 TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAW 905
++ A+KK YRK L HPDK N + K AE+ F + EA+
Sbjct: 22 SSEAIKKAYRKLALKWHPDK------NPENKEEAERRFKQVAEAY 60
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLL-----KEAW 905
+Q + L + +K+ YR+ L HPDK ++ GA + K IAE +D+L +E +
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE-AYDVLSDPRKREIF 64
Query: 906 NKFNSEEL 913
+++ E L
Sbjct: 65 DRYGEEGL 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 865 VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAW 905
+KK YRK L HPDK N K AEK F L+ EA+
Sbjct: 26 IKKAYRKLALRWHPDK------NPDNKEEAEKKFKLVSEAY 60
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 865 VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAW 905
+KK YR+ L HPDK N K AEK F + EA+
Sbjct: 19 IKKAYRRKALQWHPDK------NPDNKEFAEKKFKEVAEAY 53
>pdb|3Q1S|I Chain I, Hiv-1 Neutralizing Antibody Z13e1 In Complex With Epitope
Display Protein
Length = 151
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 886 ANLQQKYIAEKVFDLLKEAWN 906
+N QQ YI + F L KEAWN
Sbjct: 17 SNFQQPYITNRTFMLAKEAWN 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,388,378
Number of Sequences: 62578
Number of extensions: 479182
Number of successful extensions: 957
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 16
length of query: 914
length of database: 14,973,337
effective HSP length: 108
effective length of query: 806
effective length of database: 8,214,913
effective search space: 6621219878
effective search space used: 6621219878
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)