Query 002508
Match_columns 914
No_of_seqs 399 out of 649
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 01:22:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431 Auxilin-like protein a 100.0 1E-39 2.2E-44 370.4 13.4 228 686-913 195-453 (453)
2 PRK09510 tolA cell envelope in 99.3 5.3E-09 1.2E-13 117.8 32.6 12 689-700 256-267 (387)
3 COG3064 TolA Membrane protein 99.1 1.4E-07 3E-12 102.3 29.7 29 838-866 327-358 (387)
4 PRK09510 tolA cell envelope in 99.0 4.5E-07 9.9E-12 102.5 29.7 14 711-724 257-270 (387)
5 TIGR02794 tolA_full TolA prote 98.8 1.1E-06 2.3E-11 98.8 25.2 47 646-697 193-239 (346)
6 COG3064 TolA Membrane protein 98.6 2.5E-05 5.4E-10 85.3 27.0 21 689-709 258-278 (387)
7 smart00271 DnaJ DnaJ molecular 98.4 2.8E-07 6.1E-12 76.9 5.5 56 851-912 4-59 (60)
8 KOG0713 Molecular chaperone (D 98.4 2.6E-07 5.6E-12 101.9 4.7 65 842-913 10-74 (336)
9 cd06257 DnaJ DnaJ domain or J- 98.4 5E-07 1.1E-11 74.0 5.2 53 851-910 3-55 (55)
10 TIGR02794 tolA_full TolA prote 98.3 0.00015 3.3E-09 81.7 25.8 38 642-681 182-219 (346)
11 COG0484 DnaJ DnaJ-class molecu 98.3 4.4E-07 9.6E-12 102.0 5.2 56 850-912 6-61 (371)
12 PF00226 DnaJ: DnaJ domain; I 98.3 6E-07 1.3E-11 76.2 4.4 56 851-912 3-58 (64)
13 PTZ00266 NIMA-related protein 98.3 4.9E-06 1.1E-10 103.8 12.8 7 735-741 713-719 (1021)
14 PRK09430 djlA Dna-J like membr 98.2 1.6E-06 3.5E-11 94.2 6.0 62 850-911 202-263 (267)
15 KOG1029 Endocytic adaptor prot 98.2 0.00063 1.4E-08 81.4 27.4 49 491-539 333-382 (1118)
16 KOG0718 Molecular chaperone (D 98.1 1.8E-06 4E-11 98.1 4.8 63 845-911 6-68 (546)
17 PRK14288 chaperone protein Dna 98.1 2.5E-06 5.5E-11 96.4 4.8 56 850-912 5-60 (369)
18 PRK14296 chaperone protein Dna 98.0 5.7E-06 1.2E-10 93.8 4.6 54 851-912 7-60 (372)
19 PRK14279 chaperone protein Dna 98.0 6.5E-06 1.4E-10 93.9 5.0 56 850-912 11-66 (392)
20 KOG0712 Molecular chaperone (D 98.0 7.5E-06 1.6E-10 91.2 5.1 57 846-912 2-58 (337)
21 PRK14285 chaperone protein Dna 97.9 8E-06 1.7E-10 92.3 5.0 56 850-912 5-60 (365)
22 KOG1150 Predicted molecular ch 97.9 1.4E-05 3.1E-10 82.7 5.2 64 842-911 41-110 (250)
23 PRK14299 chaperone protein Dna 97.9 1.1E-05 2.4E-10 88.6 4.4 55 850-912 6-60 (291)
24 PRK14295 chaperone protein Dna 97.9 1.3E-05 2.8E-10 91.4 5.0 57 849-912 10-66 (389)
25 KOG0691 Molecular chaperone (D 97.9 1.2E-05 2.6E-10 88.5 4.5 55 851-912 8-62 (296)
26 PRK14286 chaperone protein Dna 97.8 1.3E-05 2.8E-10 90.9 4.6 56 850-912 6-61 (372)
27 PRK10266 curved DNA-binding pr 97.8 1.4E-05 2.9E-10 88.4 4.4 55 850-912 6-60 (306)
28 PRK14282 chaperone protein Dna 97.8 1.7E-05 3.6E-10 89.8 5.1 57 850-912 6-62 (369)
29 KOG0717 Molecular chaperone (D 97.8 1.5E-05 3.3E-10 90.9 4.7 58 848-911 8-65 (508)
30 PRK10767 chaperone protein Dna 97.8 1.5E-05 3.2E-10 90.2 4.7 56 850-912 6-61 (371)
31 PRK14277 chaperone protein Dna 97.8 1.7E-05 3.6E-10 90.4 4.7 57 849-912 6-62 (386)
32 PTZ00037 DnaJ_C chaperone prot 97.8 1.4E-05 3.1E-10 91.9 4.1 51 851-912 31-81 (421)
33 PRK14278 chaperone protein Dna 97.8 1.9E-05 4.2E-10 89.6 5.1 55 850-912 5-59 (378)
34 PRK14294 chaperone protein Dna 97.8 1.7E-05 3.7E-10 89.7 4.6 56 850-912 6-61 (366)
35 PRK14284 chaperone protein Dna 97.8 1.9E-05 4.1E-10 90.0 4.8 55 851-912 4-58 (391)
36 PRK14281 chaperone protein Dna 97.8 2E-05 4.4E-10 90.0 4.9 56 850-912 5-60 (397)
37 PRK14276 chaperone protein Dna 97.8 2E-05 4.3E-10 89.6 4.7 55 850-912 6-60 (380)
38 PRK14283 chaperone protein Dna 97.8 2.1E-05 4.5E-10 89.4 4.8 56 849-912 6-61 (378)
39 PRK14280 chaperone protein Dna 97.8 2.1E-05 4.6E-10 89.2 4.7 55 850-912 6-60 (376)
40 PRK14287 chaperone protein Dna 97.8 2.2E-05 4.7E-10 89.0 4.7 55 850-912 6-60 (371)
41 PRK14297 chaperone protein Dna 97.8 2.2E-05 4.8E-10 89.2 4.7 56 850-912 6-61 (380)
42 PRK14291 chaperone protein Dna 97.7 2.3E-05 4.9E-10 89.2 4.5 55 850-912 5-59 (382)
43 PRK14301 chaperone protein Dna 97.7 2.9E-05 6.2E-10 88.1 4.8 56 850-912 6-61 (373)
44 PRK14290 chaperone protein Dna 97.7 3.6E-05 7.8E-10 87.0 5.2 58 849-912 4-61 (365)
45 PRK14298 chaperone protein Dna 97.7 3E-05 6.5E-10 88.1 4.4 55 850-912 7-61 (377)
46 KOG0719 Molecular chaperone (D 97.6 5E-05 1.1E-09 80.5 4.5 59 849-912 15-73 (264)
47 PRK14293 chaperone protein Dna 97.6 5.6E-05 1.2E-09 85.7 5.1 55 850-912 5-59 (374)
48 PRK14300 chaperone protein Dna 97.6 5E-05 1.1E-09 86.1 4.5 56 849-912 4-59 (372)
49 KOG0716 Molecular chaperone (D 97.6 5.8E-05 1.3E-09 81.5 4.6 54 851-911 34-87 (279)
50 PRK14292 chaperone protein Dna 97.6 5.8E-05 1.3E-09 85.5 4.7 54 851-912 5-58 (371)
51 PRK05014 hscB co-chaperone Hsc 97.5 0.00012 2.6E-09 74.9 6.0 59 851-911 4-64 (171)
52 KOG0720 Molecular chaperone (D 97.5 0.00011 2.4E-09 84.0 5.6 73 832-912 219-291 (490)
53 PRK14289 chaperone protein Dna 97.5 9.7E-05 2.1E-09 84.1 4.7 57 849-912 6-62 (386)
54 PHA03102 Small T antigen; Revi 97.5 0.00013 2.9E-09 73.5 4.9 47 854-911 11-59 (153)
55 KOG1029 Endocytic adaptor prot 97.5 0.0057 1.2E-07 73.6 18.7 12 824-835 820-831 (1118)
56 COG2214 CbpA DnaJ-class molecu 97.4 0.00013 2.9E-09 73.1 4.4 57 850-912 8-64 (237)
57 PRK03578 hscB co-chaperone Hsc 97.4 0.00024 5.1E-09 73.2 5.9 59 851-911 9-69 (176)
58 PRK00294 hscB co-chaperone Hsc 97.4 0.00028 6.1E-09 72.5 6.1 59 851-911 7-67 (173)
59 PTZ00341 Ring-infected erythro 97.4 0.00015 3.3E-09 89.1 4.5 56 849-912 574-629 (1136)
60 PRK01356 hscB co-chaperone Hsc 97.3 0.00026 5.6E-09 72.2 5.4 57 851-911 5-63 (166)
61 PTZ00100 DnaJ chaperone protei 97.3 0.00025 5.4E-09 68.5 4.1 49 850-909 67-115 (116)
62 TIGR00714 hscB Fe-S protein as 97.2 0.00044 9.5E-09 69.9 5.6 50 860-911 3-52 (157)
63 KOG0721 Molecular chaperone (D 97.2 0.00044 9.5E-09 72.9 5.1 55 851-912 102-156 (230)
64 KOG0715 Molecular chaperone (D 97.1 0.00043 9.4E-09 76.3 4.9 62 843-912 38-99 (288)
65 TIGR03835 termin_org_DnaJ term 96.9 0.00083 1.8E-08 81.3 5.0 54 851-912 5-58 (871)
66 KOG0550 Molecular chaperone (D 96.9 0.002 4.4E-08 73.4 7.6 73 832-911 354-430 (486)
67 COG5407 SEC63 Preprotein trans 96.7 0.002 4.4E-08 73.7 5.6 80 823-911 74-159 (610)
68 KOG0624 dsRNA-activated protei 96.7 0.0055 1.2E-07 68.8 8.3 108 802-913 340-455 (504)
69 KOG0163 Myosin class VI heavy 96.6 0.034 7.3E-07 67.1 15.0 21 823-843 1102-1127(1259)
70 KOG4364 Chromatin assembly fac 96.6 0.056 1.2E-06 64.7 16.2 22 813-834 650-671 (811)
71 KOG4364 Chromatin assembly fac 96.5 0.069 1.5E-06 64.0 16.2 11 852-862 667-677 (811)
72 PHA02624 large T antigen; Prov 96.4 0.0029 6.3E-08 75.7 4.3 49 852-911 15-65 (647)
73 PF05672 MAP7: MAP7 (E-MAP-115 96.1 0.77 1.7E-05 47.6 19.6 19 494-512 28-46 (171)
74 PRK01773 hscB co-chaperone Hsc 95.8 0.015 3.2E-07 60.1 5.9 56 854-911 8-65 (173)
75 KOG2072 Translation initiation 95.8 7.8 0.00017 48.4 31.9 19 336-354 441-459 (988)
76 KOG0722 Molecular chaperone (D 95.6 0.0056 1.2E-07 66.1 2.0 70 835-912 14-89 (329)
77 KOG2891 Surface glycoprotein [ 95.5 2.3 4.9E-05 47.0 21.1 10 345-354 187-196 (445)
78 PRK07735 NADH dehydrogenase su 95.1 1.1 2.4E-05 51.9 18.1 18 649-666 205-222 (430)
79 KOG0714 Molecular chaperone (D 95.0 0.014 3.1E-07 61.6 2.8 53 853-911 8-60 (306)
80 TIGR02349 DnaJ_bact chaperone 95.0 0.023 4.9E-07 64.3 4.2 32 851-882 3-34 (354)
81 PF05262 Borrelia_P83: Borreli 94.9 1.9 4.1E-05 51.3 19.7 12 816-827 425-436 (489)
82 PRK07735 NADH dehydrogenase su 94.9 2.5 5.5E-05 49.1 20.0 9 750-758 283-291 (430)
83 KOG0163 Myosin class VI heavy 94.5 0.7 1.5E-05 56.5 14.7 10 874-883 1185-1194(1259)
84 PF12037 DUF3523: Domain of un 94.4 11 0.00023 42.2 27.1 9 433-441 28-36 (276)
85 KOG1144 Translation initiation 93.9 0.89 1.9E-05 55.9 14.2 13 829-841 468-480 (1064)
86 KOG4661 Hsp27-ERE-TATA-binding 93.8 1.1 2.4E-05 53.3 14.3 6 825-830 865-870 (940)
87 KOG1789 Endocytosis protein RM 93.4 0.092 2E-06 65.6 5.0 40 862-911 1299-1338(2235)
88 KOG1144 Translation initiation 92.3 1 2.3E-05 55.3 11.7 10 832-841 554-563 (1064)
89 KOG2891 Surface glycoprotein [ 92.3 15 0.00032 41.0 19.3 8 335-342 148-155 (445)
90 KOG0723 Molecular chaperone (D 92.0 0.23 4.9E-06 47.7 4.7 47 854-911 62-108 (112)
91 COG5269 ZUO1 Ribosome-associat 89.6 0.31 6.8E-06 53.4 3.6 47 860-911 58-104 (379)
92 KOG2412 Nuclear-export-signal 88.6 7.7 0.00017 46.5 14.1 14 748-761 360-373 (591)
93 COG1076 DjlA DnaJ-domain-conta 87.6 0.52 1.1E-05 48.5 3.5 57 852-908 117-173 (174)
94 KOG3054 Uncharacterized conser 84.2 8.3 0.00018 42.2 10.5 12 339-350 5-22 (299)
95 KOG2412 Nuclear-export-signal 82.5 36 0.00078 41.2 15.6 6 692-697 364-369 (591)
96 TIGR03319 YmdA_YtgF conserved 79.0 1.6E+02 0.0035 35.8 23.9 8 745-752 236-243 (514)
97 KOG2002 TPR-containing nuclear 76.7 11 0.00023 48.1 9.4 12 335-346 678-689 (1018)
98 PRK12704 phosphodiesterase; Pr 74.8 2.1E+02 0.0045 34.9 25.0 10 870-879 400-409 (520)
99 PF02731 SKIP_SNW: SKIP/SNW do 74.7 23 0.0005 36.6 9.7 16 449-464 108-123 (158)
100 KOG3054 Uncharacterized conser 73.8 29 0.00062 38.2 10.6 8 750-757 218-225 (299)
101 PF00769 ERM: Ezrin/radixin/mo 73.4 1.5E+02 0.0032 32.6 18.5 8 814-821 208-215 (246)
102 KOG0162 Myosin class I heavy c 72.8 30 0.00066 43.1 11.5 17 354-370 1032-1049(1106)
103 PRK00106 hypothetical protein; 62.5 3.7E+02 0.008 33.0 25.4 8 745-752 257-264 (535)
104 PF02029 Caldesmon: Caldesmon; 60.4 48 0.001 39.9 10.0 13 816-828 450-462 (492)
105 KOG1924 RhoA GTPase effector D 59.3 39 0.00085 42.5 9.0 26 127-153 384-409 (1102)
106 PF07946 DUF1682: Protein of u 58.3 22 0.00048 40.2 6.6 10 348-357 197-206 (321)
107 COG2268 Uncharacterized protei 57.0 4.6E+02 0.01 32.4 26.6 8 432-439 206-213 (548)
108 PF15195 TMEM210: TMEM210 fami 53.7 9.4 0.0002 36.3 2.2 20 347-366 94-113 (116)
109 TIGR03319 YmdA_YtgF conserved 49.3 5.7E+02 0.012 31.2 24.1 9 870-878 394-402 (514)
110 KOG2441 mRNA splicing factor/p 48.8 1.4E+02 0.003 35.2 10.7 20 450-469 282-301 (506)
111 KOG2002 TPR-containing nuclear 48.4 1.2E+02 0.0025 39.4 10.8 7 345-351 610-616 (1018)
112 PF14687 DUF4460: Domain of un 47.4 38 0.00082 33.0 5.3 48 860-910 6-53 (112)
113 PLN02316 synthase/transferase 46.1 3.3E+02 0.0072 36.1 14.7 8 335-342 169-176 (1036)
114 PRK12704 phosphodiesterase; Pr 45.7 6.5E+02 0.014 30.8 23.9 8 745-752 242-249 (520)
115 PF12037 DUF3523: Domain of un 44.4 5.2E+02 0.011 29.3 27.4 14 432-445 24-37 (276)
116 KOG3654 Uncharacterized CH dom 43.4 70 0.0015 38.5 7.5 20 851-870 642-662 (708)
117 KOG0260 RNA polymerase II, lar 41.1 4.4E+02 0.0095 35.4 14.1 7 173-179 1395-1401(1605)
118 KOG0742 AAA+-type ATPase [Post 40.3 7.5E+02 0.016 30.0 22.3 13 829-841 516-528 (630)
119 KOG1363 Predicted regulator of 40.0 1.1E+02 0.0024 36.7 8.6 10 512-521 325-334 (460)
120 KOG3915 Transcription regulato 38.7 2.4E+02 0.0051 34.0 10.7 12 448-459 509-520 (641)
121 KOG0568 Molecular chaperone (D 38.3 39 0.00084 36.9 4.2 65 832-906 30-97 (342)
122 PRK00106 hypothetical protein; 37.1 8.9E+02 0.019 29.9 26.6 12 661-672 195-206 (535)
123 PF09756 DDRGK: DDRGK domain; 36.1 12 0.00026 39.6 0.0 7 750-756 117-123 (188)
124 PF03154 Atrophin-1: Atrophin- 34.7 21 0.00046 45.6 1.8 16 104-119 141-156 (982)
125 PF06637 PV-1: PV-1 protein (P 33.5 8.9E+02 0.019 28.8 14.2 15 618-632 318-332 (442)
126 PF05038 Cytochrom_B558a: Cyto 33.4 12 0.00027 39.1 -0.4 19 345-363 130-156 (186)
127 KOG1785 Tyrosine kinase negati 32.5 82 0.0018 37.0 5.7 26 350-375 520-547 (563)
128 PF03154 Atrophin-1: Atrophin- 32.1 26 0.00056 44.8 2.0 23 803-825 815-838 (982)
129 PF08628 Nexin_C: Sorting nexi 31.8 1.7E+02 0.0036 27.9 7.0 72 830-903 36-110 (113)
130 COG5269 ZUO1 Ribosome-associat 31.3 2.9E+02 0.0063 31.3 9.4 6 345-350 134-139 (379)
131 PRK06800 fliH flagellar assemb 31.0 86 0.0019 33.4 5.2 47 836-882 102-162 (228)
132 KOG2507 Ubiquitin regulatory p 29.1 1.9E+02 0.0041 34.5 8.0 6 354-359 144-149 (506)
133 TIGR01069 mutS2 MutS2 family p 28.9 9.5E+02 0.021 30.8 14.7 6 836-841 717-722 (771)
134 KOG2253 U1 snRNP complex, subu 27.4 8.4E+02 0.018 30.8 13.1 145 467-611 245-409 (668)
135 PF09726 Macoilin: Transmembra 26.1 1.5E+03 0.032 29.0 23.6 8 66-73 165-172 (697)
136 KOG3654 Uncharacterized CH dom 25.5 4.1E+02 0.0088 32.5 9.8 13 147-159 121-133 (708)
137 KOG2689 Predicted ubiquitin re 25.3 8.9E+02 0.019 27.6 11.8 25 823-847 236-263 (290)
138 KOG0566 Inositol-1,4,5-triphos 23.4 8.5E+02 0.018 32.2 12.5 12 343-354 1039-1050(1080)
139 PRK12705 hypothetical protein; 20.8 1.6E+03 0.035 27.6 20.4 9 870-878 388-396 (508)
No 1
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=100.00 E-value=1e-39 Score=370.40 Aligned_cols=228 Identities=47% Similarity=0.692 Sum_probs=187.2
Q ss_pred hhcccchhhhhcCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC---C-cCccCCCcc----ccccCCCcccccchhhhhc
Q 002508 686 QKNDNDLESFFSMSSRPSSAPRPRANTSDSLFDSQSKGGPEPA---R-RTSVGASSN----MRKASSTTNIVDDLSSIFG 757 (914)
Q Consensus 686 ~~~~~~lesFfs~g~R~~sapr~r~~~~d~~fdsq~q~~~~~~---~-rtSss~Ssn----m~k~~~~~~~~dd~~s~fg 757 (914)
......+++||....+.++++..+.+.+++|.+..+.+.+..- + ..+...+.+ +.+++.-++....+...|+
T Consensus 195 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 274 (453)
T KOG0431|consen 195 QATAPKADSFFNSTSRGASAPADPFADLDDLSSGSNASKSGSSSDLSSRVSPGITETTDSPPSKTSSPPNQQKKSPPDFQ 274 (453)
T ss_pred cCCCccccccccccccCCCCCCCccccccchhhhcccCCCCCcccccCCCCCCCCCCCCCchhhhcccccchhccchhhh
Confidence 3455678899998888888888888888777665554433221 1 111111111 6666666777777767776
Q ss_pred cCCCC-------------CCcc------ccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH----HH
Q 002508 758 AAGSS-------------AGEF------QDVEGETEERRRARLERHQRTQERAAKALAEKNERDLQAQRDQAER----HR 814 (914)
Q Consensus 758 ~~~~s-------------~~~f------~~~~g~~~~r~~a~~~r~~~~~~~~~~~l~ek~~r~~~~~~e~~er----~~ 814 (914)
..+.+ ...| ..+.|...+++..+..+++.+..+....+.++..+|++-.++++++ .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r 354 (453)
T KOG0431|consen 275 AKPSSESPEASTQKRPNYAQKRSDVPPGNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSR 354 (453)
T ss_pred cccCccchhhccccccchhccCCCCCcccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHh
Confidence 64311 1111 1345888888899999999999999999999999999888999999 89
Q ss_pred hhHhHHHHHHHHhccCCchHHHHHhhhccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHH
Q 002508 815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIA 894 (914)
Q Consensus 815 l~d~id~ki~~W~~GKe~niRaLLstL~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iA 894 (914)
|.|.||.+|..|..||++||||||||||||||++|+|++|+|+||||+++|||+|||||||||||||+++|++++|||||
T Consensus 355 ~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Ia 434 (453)
T KOG0431|consen 355 LMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIA 434 (453)
T ss_pred hcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q 002508 895 EKVFDLLKEAWNKFNSEEL 913 (914)
Q Consensus 895 e~vF~~LneAwe~F~~~e~ 913 (914)
+.||++|++||++|..+++
T Consensus 435 ekvfd~l~eawn~f~~~~~ 453 (453)
T KOG0431|consen 435 EKVFDALSEAWNKFNQQED 453 (453)
T ss_pred HHHHHHHHHHHHhhhccCC
Confidence 9999999999999998875
No 2
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=99.29 E-value=5.3e-09 Score=117.84 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=8.9
Q ss_pred ccchhhhhcCCC
Q 002508 689 DNDLESFFSMSS 700 (914)
Q Consensus 689 ~~~lesFfs~g~ 700 (914)
...|++||+.+.
T Consensus 256 e~~~dd~~~gl~ 267 (387)
T PRK09510 256 AAEVDDLFGGLD 267 (387)
T ss_pred HHHHHHHhhccc
Confidence 446999997655
No 3
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=1.4e-07 Score=102.35 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=17.6
Q ss_pred HhhhccccCC-CC--CccccccccccchHHHH
Q 002508 838 LATMQYVLWP-ES--GWQPVSLTDLITAAAVK 866 (914)
Q Consensus 838 LstL~~VLW~-~~--~Wk~v~l~dL~~~~~VK 866 (914)
.|.|+.-|-| ++ ++++++-.+-++...|.
T Consensus 327 ~C~l~ikL~pdGtl~~~~~~~Gd~~lCqAals 358 (387)
T COG3064 327 TCRLRIKLAPDGTLLDIKPEGGDPALCQAALS 358 (387)
T ss_pred eeEEEEEEcCCcceeeccccCCChHHHHHHHH
Confidence 5888876755 33 56666666655555553
No 4
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.98 E-value=4.5e-07 Score=102.51 Aligned_cols=14 Identities=29% Similarity=0.473 Sum_probs=8.8
Q ss_pred CCCCCccCCCCCCC
Q 002508 711 NTSDSLFDSQSKGG 724 (914)
Q Consensus 711 ~~~d~~fdsq~q~~ 724 (914)
..+|+||+....+.
T Consensus 257 ~~~dd~~~gl~~~~ 270 (387)
T PRK09510 257 AEVDDLFGGLDSGK 270 (387)
T ss_pred HHHHHHhhcccccc
Confidence 44788886655443
No 5
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=98.82 E-value=1.1e-06 Score=98.78 Aligned_cols=47 Identities=40% Similarity=0.483 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc
Q 002508 646 EALQRAERAAVQRAASEARERAAAEARERAAAAARANQNQQKNDNDLESFFS 697 (914)
Q Consensus 646 Ear~~aEr~A~era~~Ear~ra~~eA~~raaaear~~~~~~~~~~~lesFfs 697 (914)
+++.++|. |.+++++++.+++..++..++.+++..++ ....|++||+
T Consensus 193 eak~kae~-a~~ka~~ea~~ka~~~~~~~~~~~a~~k~----~~~~~~d~~g 239 (346)
T TIGR02794 193 EAKAKAEA-AKAKAAAEAAAKAEAEAAAAAAAEAERKA----DEAELGDIFG 239 (346)
T ss_pred HHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhhc
Confidence 44455554 55566666655555555444443333222 1334777774
No 6
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=2.5e-05 Score=85.29 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=13.9
Q ss_pred ccchhhhhcCCCCCCCCCCCC
Q 002508 689 DNDLESFFSMSSRPSSAPRPR 709 (914)
Q Consensus 689 ~~~lesFfs~g~R~~sapr~r 709 (914)
...|+|||+.++-...+|+..
T Consensus 258 ~aaldD~fg~ls~g~~a~~~g 278 (387)
T COG3064 258 AAALDDIFGGLSSGKNAPKTG 278 (387)
T ss_pred HhhHHHHhccccccCCCCCcC
Confidence 346999998877555555443
No 7
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.45 E-value=2.8e-07 Score=76.90 Aligned_cols=56 Identities=30% Similarity=0.440 Sum_probs=49.4
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|.-|||..-++..+||++|+++++.+|||++... ...+...|..|++||++|.+..
T Consensus 4 y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 4 YEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcCCC
Confidence 6778898889999999999999999999998742 3578999999999999998864
No 8
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.6e-07 Score=101.86 Aligned_cols=65 Identities=25% Similarity=0.330 Sum_probs=56.1
Q ss_pred ccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002508 842 QYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL 913 (914)
Q Consensus 842 ~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e~ 913 (914)
..|+-...=|+-|++...++..+||+||||++|++||||++.+ .-|...|..||.||++|+|+|.
T Consensus 10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-------p~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-------PNANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhcCHHH
Confidence 3444445678899999999999999999999999999999964 1588999999999999999873
No 9
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.38 E-value=5e-07 Score=73.97 Aligned_cols=53 Identities=28% Similarity=0.435 Sum_probs=47.0
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 910 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~ 910 (914)
|+-|||..-++..+||++|+++++.+|||+.... ..+...|..|++||++|++
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence 5678888889999999999999999999998742 4788999999999999874
No 10
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=98.35 E-value=0.00015 Score=81.67 Aligned_cols=38 Identities=47% Similarity=0.532 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002508 642 RTEAEALQRAERAAVQRAASEARERAAAEARERAAAAARA 681 (914)
Q Consensus 642 ~ae~Ear~~aEr~A~era~~Ear~ra~~eA~~raaaear~ 681 (914)
+++++++.++| +++.++++ +++++.++|.+++.+++.+
T Consensus 182 kaea~~ka~ae-eak~kae~-a~~ka~~ea~~ka~~~~~~ 219 (346)
T TIGR02794 182 KAEAEAKAKAE-EAKAKAEA-AKAKAAAEAAAKAEAEAAA 219 (346)
T ss_pred HHHHHHHHHHH-HHHHHHHH-HHHhhhhhHHHHHHHHHHH
Confidence 33344444555 45555444 5555555555444444433
No 11
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.4e-07 Score=101.96 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=50.5
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+|||||||+++++|||+++.. .-|+..|..||+||++|+|.+
T Consensus 6 yYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-------~~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 6 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-------KEAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-------HHHHHHHHHHHHHHHHhCCHH
Confidence 37889999999999999999999999999999842 258899999999999999875
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.31 E-value=6e-07 Score=76.20 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=49.1
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|.-|||..-++..+|+++|+++++.+|||++.+.+ -.++.+|..|++||++|.+.+
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~~~ 58 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSDPE 58 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCCHH
Confidence 56689999999999999999999999999998532 468899999999999998753
No 13
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=98.27 E-value=4.9e-06 Score=103.83 Aligned_cols=7 Identities=43% Similarity=0.434 Sum_probs=3.1
Q ss_pred CCccccc
Q 002508 735 ASSNMRK 741 (914)
Q Consensus 735 ~Ssnm~k 741 (914)
.+.+|-.
T Consensus 713 ~~~~~~~ 719 (1021)
T PTZ00266 713 PSSHMMH 719 (1021)
T ss_pred cCcccee
Confidence 3445443
No 14
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.21 E-value=1.6e-06 Score=94.19 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=55.8
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
-|+-|+|..-++..+||++||++++.+||||+...|.+.+....|+..|..|++||++++..
T Consensus 202 ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 202 AYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999887877777778999999999999999864
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00063 Score=81.39 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 002508 491 ATQQDAQERLDREMQQREKGEEQRRLERERE-REREEKEREKKRIEKEKE 539 (914)
Q Consensus 491 ~~~~e~qerl~rE~~e~e~~e~~er~erEre-reree~ere~r~~E~e~e 539 (914)
+...++|.+.+||..++.++|++++.+|||+ .||..+...++++|+.|+
T Consensus 333 Rq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 333 RQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555566666555 333333333444444444
No 16
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.8e-06 Score=98.09 Aligned_cols=63 Identities=27% Similarity=0.363 Sum_probs=55.8
Q ss_pred cCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 845 LWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 845 LW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
+|+.--|--|+|..-+|..+||++||+.|+.+||||+. ++++|..|+.+|..|..||++|.|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHhcCh
Confidence 45444566788999999999999999999999999997 4689999999999999999999885
No 17
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=2.5e-06 Score=96.42 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=49.1
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||+||||+++++||||++.. . -|+..|..|++||++|.+.+
T Consensus 5 yY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~---~----~a~~~f~~i~~AYevLsd~~ 60 (369)
T PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD---K----EAEEKFKLINEAYGVLSDEK 60 (369)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---c----HHHHHHHHHHHHHHHhccHH
Confidence 37889999999999999999999999999998632 1 37889999999999999865
No 18
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.97 E-value=5.7e-06 Score=93.76 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=48.0
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|+-|+|...++..+||++|||+++++|||++... -|+..|..|++||++|.+++
T Consensus 7 Y~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~--------~a~~~F~~i~~AyevLsD~~ 60 (372)
T PRK14296 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSP--------DAHDKMVEINEAADVLLDKD 60 (372)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------hHHHHHHHHHHHHHHhcCHH
Confidence 7789999999999999999999999999998621 26778999999999999875
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.97 E-value=6.5e-06 Score=93.85 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=49.2
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|..-++..+||++|||+++++||||++.. .-|+..|..|++||++|.|++
T Consensus 11 yy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vLsD~~ 66 (392)
T PRK14279 11 FYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-------PAAEERFKAVSEAHDVLSDPA 66 (392)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-------hHHHHHHHHHHHHHHHhcchh
Confidence 36789999999999999999999999999998632 137789999999999999876
No 20
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=7.5e-06 Score=91.18 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=49.6
Q ss_pred CCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 846 WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 846 W~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|+-.-|.-|+|...++..+|||+|||+.+++||||++. |...|..|+.||++|+|.|
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----------~~ekfkei~~AyevLsd~e 58 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----------AGEKFKEISQAYEVLSDPE 58 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHHhcCHH
Confidence 44445677889999999999999999999999999983 6678999999999999865
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=8e-06 Score=92.30 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=48.9
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|...++..+||++||++++.+||||+... .-|+..|..|++||++|.+++
T Consensus 5 ~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 60 (365)
T PRK14285 5 YYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-------KEAESIFKEATEAYEVLIDDN 60 (365)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-------HHHHHHHHHHHHHHHHHcCcc
Confidence 36789999999999999999999999999998632 137789999999999999875
No 22
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1.4e-05 Score=82.68 Aligned_cols=64 Identities=30% Similarity=0.529 Sum_probs=50.2
Q ss_pred ccccCCCCCcccc------ccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 842 QYVLWPESGWQPV------SLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 842 ~~VLW~~~~Wk~v------~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
..+|-|++.|-.| .|..-++..+||+-||++.|.|||||++.. ..-|++.|++|..||..|.+.
T Consensus 41 eRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd------~~rAqkAFdivkKA~k~l~n~ 110 (250)
T KOG1150|consen 41 ERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD------AERAQKAFDIVKKAYKLLEND 110 (250)
T ss_pred HHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc------HHHHHHHHHHHHHHHHHHhCH
Confidence 3456666655544 444466789999999999999999999852 347999999999999998764
No 23
>PRK14299 chaperone protein DnaJ; Provisional
Probab=97.87 E-value=1.1e-05 Score=88.56 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=47.5
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|..-++..+||++||++++++|||++... -|+..|..||+||++|++.+
T Consensus 6 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 6 YYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--------GAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhcCHH
Confidence 36778999999999999999999999999998621 26778999999999998753
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.86 E-value=1.3e-05 Score=91.37 Aligned_cols=57 Identities=28% Similarity=0.400 Sum_probs=49.9
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|.-|+|..-++..+||++||++++.+|||++... ..|+..|..|++||++|.+.+
T Consensus 10 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-------AKAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hhHHHHHHHHHHHHHHHCchh
Confidence 458889999999999999999999999999998632 147889999999999999864
No 25
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.2e-05 Score=88.55 Aligned_cols=55 Identities=36% Similarity=0.537 Sum_probs=49.2
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|.-|||....++.+|+++|++.+|.|||||++.+ ++ |..-|..|.+||++|.+++
T Consensus 8 Y~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d---P~----A~ekFq~L~eAy~VL~D~~ 62 (296)
T KOG0691|consen 8 YDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD---PQ----AAEKFQELSEAYEVLSDEE 62 (296)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC---hH----HHHHHHHHHHHHHHhcCHH
Confidence 5678999999999999999999999999999953 22 8999999999999999875
No 26
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.85 E-value=1.3e-05 Score=90.90 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=48.6
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++++|||++... ..|+..|..|++||++|++.+
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 61 (372)
T PRK14286 6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-------KESEEKFKEATEAYEILRDPK 61 (372)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------hHHHHHHHHHHHHHHHhccHH
Confidence 36778999999999999999999999999998632 137889999999999998864
No 27
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=97.83 E-value=1.4e-05 Score=88.36 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=48.0
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|...++..+||++||++++++|||++.. ..|+..|..|++||++|++..
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--------~~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 6 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--------PDAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------ccHHHHHHHHHHHHHHhhhHH
Confidence 4778899999999999999999999999999652 147889999999999998753
No 28
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.83 E-value=1.7e-05 Score=89.83 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=49.4
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|...++..+||+|||++++++|||++... ...|+..|..|++||++|++.+
T Consensus 6 ~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d~~ 62 (369)
T PRK14282 6 YYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSDPQ 62 (369)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcChh
Confidence 47789999999999999999999999999998631 1248889999999999999875
No 29
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.5e-05 Score=90.85 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=51.3
Q ss_pred CCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 848 ESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 848 ~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
.|-|..|+|..-.++.+||++|||++|.+||||++. . ..-|..+|.+|+.||++|.+.
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd---~---ieeat~~F~~i~aAYeVLSdp 65 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD---R---IEEATQQFQLIQAAYEVLSDP 65 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc---c---HHHHHHHHHHHHHHHHHhcCh
Confidence 467888999999999999999999999999999863 2 235899999999999999875
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.82 E-value=1.5e-05 Score=90.20 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=48.9
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++.+|||++... ..|+..|..|++||++|.+..
T Consensus 6 ~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~ 61 (371)
T PRK10767 6 YYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-------KEAEEKFKEIKEAYEVLSDPQ 61 (371)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------HHHHHHHHHHHHHHHHhcchh
Confidence 37789999999999999999999999999998632 137889999999999998765
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.81 E-value=1.7e-05 Score=90.38 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=49.4
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|.-|+|..-++..+||++||++++.+|||++... ..|+..|..|++||++|.+.+
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 62 (386)
T PRK14277 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-------KEAEQKFKEINEAYEILSDPQ 62 (386)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hHHHHHHHHHHHHHHHhCCHH
Confidence 347889999999999999999999999999998632 137789999999999999864
No 32
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.80 E-value=1.4e-05 Score=91.90 Aligned_cols=51 Identities=27% Similarity=0.480 Sum_probs=45.3
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|+-|+|..-++..+||+||||+++++||||+. + ...|..|++||++|.+.+
T Consensus 31 Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~----~-------~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG----D-------PEKFKEISRAYEVLSDPE 81 (421)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc----h-------HHHHHHHHHHHHHhccHH
Confidence 77789999999999999999999999999974 1 248999999999999865
No 33
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.80 E-value=1.9e-05 Score=89.64 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=48.5
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|..-++..+||+|||++++++|||++.. .-|+..|..|++||++|.+.+
T Consensus 5 ~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--------~~a~~~f~~i~~Ay~vL~d~~ 59 (378)
T PRK14278 5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--------EEAQEKFKEISVAYEVLSDPE 59 (378)
T ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--------HHHHHHHHHHHHHHHHhchhh
Confidence 4778999999999999999999999999999862 137889999999999998864
No 34
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.80 E-value=1.7e-05 Score=89.67 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=48.5
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++++|||+++.. ..|+..|..|++||++|++.+
T Consensus 6 ~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------~~~~~~f~~~~~Ay~vL~d~~ 61 (366)
T PRK14294 6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-------KEAEELFKEAAEAYEVLSDPK 61 (366)
T ss_pred hHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------hHHHHHHHHHHHHHHHhccHH
Confidence 37788999999999999999999999999998632 136788999999999999864
No 35
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.79 E-value=1.9e-05 Score=90.02 Aligned_cols=55 Identities=27% Similarity=0.440 Sum_probs=48.4
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|+-|+|..-+++.+||++||++++++|||+++.. ..|+..|..|++||++|.+.+
T Consensus 4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 58 (391)
T PRK14284 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-------AEAEKRFKEVSEAYEVLSDAQ 58 (391)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------hHHHHHHHHHHHHHHHhcCHH
Confidence 6778999999999999999999999999998742 137888999999999999764
No 36
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.78 E-value=2e-05 Score=90.01 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=48.6
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|..-++..+||++||++++++|||++... ..|+..|..||+||++|.+..
T Consensus 5 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 60 (397)
T PRK14281 5 YYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-------KEAEEHFKEVNEAYEVLSNDD 60 (397)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-------hHHHHHHHHHHHHHHHhhhhh
Confidence 36788999999999999999999999999998632 137789999999999999864
No 37
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.78 E-value=2e-05 Score=89.60 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=48.2
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|..-++..+||++||++++++|||++... -|+..|..|++||++|.+.+
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (380)
T PRK14276 6 YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--------GAEEKYKEVQEAYETLSDPQ 60 (380)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhcCHh
Confidence 47789999999999999999999999999998632 26678999999999999865
No 38
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.78 E-value=2.1e-05 Score=89.36 Aligned_cols=56 Identities=25% Similarity=0.392 Sum_probs=49.1
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|+-|+|..-++..+||++||++++++|||+++.. -|+..|..|++||++|.+.+
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~~Lsd~~ 61 (378)
T PRK14283 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEE--------GAEEKFKEISEAYAVLSDDE 61 (378)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhchhH
Confidence 347889999999999999999999999999998631 37789999999999998865
No 39
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.77 E-value=2.1e-05 Score=89.23 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=48.1
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|...++..+||++||++++.+|||++... -|+..|..|++||++|.+.+
T Consensus 6 ~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (376)
T PRK14280 6 YYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--------GADEKFKEISEAYEVLSDDQ 60 (376)
T ss_pred hHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhccHh
Confidence 37789999999999999999999999999998632 26778999999999998864
No 40
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.76 E-value=2.2e-05 Score=89.01 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=47.9
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||+|||++++.+|||++... -|+..|..||+||++|.+.+
T Consensus 6 ~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (371)
T PRK14287 6 YYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP--------DAEDKFKEVKEAYDTLSDPQ 60 (371)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhCcHh
Confidence 36789999999999999999999999999997521 26778999999999998865
No 41
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.76 E-value=2.2e-05 Score=89.18 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=48.9
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++.+|||++... ..|+..|..||+||++|.+.+
T Consensus 6 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 61 (380)
T PRK14297 6 YYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-------KEAEEKFKEINEAYQVLSDPQ 61 (380)
T ss_pred hHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcCHh
Confidence 47788999999999999999999999999998632 147889999999999999864
No 42
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.74 E-value=2.3e-05 Score=89.17 Aligned_cols=55 Identities=25% Similarity=0.382 Sum_probs=48.0
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|...++..+||++||++++++|||+++.. -|+..|..|++||++|++.+
T Consensus 5 ~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vLsd~~ 59 (382)
T PRK14291 5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--------EAEEKFKEINEAYQVLSDPE 59 (382)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------cHHHHHHHHHHHHHHhcCHH
Confidence 36789999999999999999999999999998631 36678999999999999864
No 43
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=2.9e-05 Score=88.13 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=48.2
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++.+||||++.. .-|+..|..|++||++|++..
T Consensus 6 ~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-------~~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 6 YYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-------PEAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred hHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-------hHHHHHHHHHHHHHHHhcchh
Confidence 36778999999999999999999999999998642 136778999999999999864
No 44
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.70 E-value=3.6e-05 Score=87.03 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=50.1
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|+-|+|..-++..+||++||++++++|||+++.. ...|+..|..|++||++|.+..
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d~~ 61 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSDPQ 61 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcChh
Confidence 347889999999999999999999999999997631 1248889999999999999864
No 45
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.69 E-value=3e-05 Score=88.14 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=48.0
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|..-++..+||++||++++++|||+++.. -|+..|..||+||++|.+.+
T Consensus 7 ~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~ 61 (377)
T PRK14298 7 YYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--------DAEEKFKEISEAYAVLSDAE 61 (377)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh--------hHHHHHHHHHHHHHHhcchH
Confidence 37789999999999999999999999999998521 26778999999999999875
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=5e-05 Score=80.51 Aligned_cols=59 Identities=27% Similarity=0.430 Sum_probs=52.9
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
+-|.-|||..-+++..|+++|+|+.|.+|||+++ .+++.-|...|+.|+.+|.+|.+++
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iLsDee 73 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQILSDEE 73 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 5577889999999999999999999999999986 3677789999999999999998865
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.61 E-value=5.6e-05 Score=85.75 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=48.2
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|+-|+|...++..+||++||++++.+|||+++.. -|+..|..|++||++|+++.
T Consensus 5 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~vL~~~~ 59 (374)
T PRK14293 5 YYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--------GAEDRFKEINRAYEVLSDPE 59 (374)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHHHHHHHhchH
Confidence 47889999999999999999999999999998632 26678999999999999864
No 48
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.60 E-value=5e-05 Score=86.11 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=48.6
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|+-|+|..-++..+||++||++++.+|||++... .|+..|..|++||++|.+..
T Consensus 4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 59 (372)
T PRK14300 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK--------DAEKKFKEINAAYDVLKDEQ 59 (372)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhhhHh
Confidence 447889999999999999999999999999997621 26678999999999999864
No 49
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=5.8e-05 Score=81.53 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=45.9
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-|||...+|..+|||+||++++++||||++.. + -+-..|++||.||++|.+.
T Consensus 34 YdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P----~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 34 YDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---P----EATDKFKEINTAYAILSDP 87 (279)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---c----hhHHHHHHHHHHHHHhcCh
Confidence 5567788899999999999999999999999753 2 2556899999999999875
No 50
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.58 E-value=5.8e-05 Score=85.47 Aligned_cols=54 Identities=28% Similarity=0.489 Sum_probs=47.5
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|+-|+|...++..+||++||++++++|||++... .|+..|..||+||++|.+..
T Consensus 5 y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~--------~a~~~~~~i~~Ay~vL~d~~ 58 (371)
T PRK14292 5 YELLGVSRTASADEIKSAYRKLALKYHPDRNKEK--------GAAEKFAQINEAYAVLSDAE 58 (371)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCh--------hHHHHHHHHHHHHHHhcchh
Confidence 6778999999999999999999999999998631 36778999999999999864
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.55 E-value=0.00012 Score=74.93 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=48.3
Q ss_pred cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-+||.. -++..+|+++|++++..+|||+.... +...+.+|...|..||+||++|++.
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~--~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANA--SERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 34466666 36789999999999999999998753 4445668999999999999999875
No 52
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00011 Score=84.04 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=59.6
Q ss_pred chHHHHHhhhccccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 832 GNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 832 ~niRaLLstL~~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
.|.+.+.--|-..+=.-.-|--|||-.-++.++|||.|||....|||||+... .|+.+|..|+.||+++.+.
T Consensus 219 ~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig~~ 290 (490)
T KOG0720|consen 219 TNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIGDS 290 (490)
T ss_pred cchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhcch
Confidence 56666666666655333467889999999999999999999999999999842 6899999999999998764
Q ss_pred C
Q 002508 912 E 912 (914)
Q Consensus 912 e 912 (914)
+
T Consensus 291 ~ 291 (490)
T KOG0720|consen 291 V 291 (490)
T ss_pred h
Confidence 3
No 53
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.48 E-value=9.7e-05 Score=84.14 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=48.9
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|.-|+|..-++..+||++||++++.+|||+++.. ..|+..|..|++||++|.+..
T Consensus 6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-------~~a~~~f~~i~~Ay~~L~d~~ 62 (386)
T PRK14289 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-------KEAEEKFKEAAEAYDVLSDPD 62 (386)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-------hHHHHHHHHHHHHHHHhcCHH
Confidence 347788999999999999999999999999998632 137889999999999998763
No 54
>PHA03102 Small T antigen; Reviewed
Probab=97.46 E-value=0.00013 Score=73.54 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=38.2
Q ss_pred ccccccc--chHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 854 VSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 854 v~l~dL~--~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|||..-+ +..+||++||++++.+||||.. + ...|..||+||++|.+.
T Consensus 11 LGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~-------~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----D-------EEKMKELNTLYKKFRES 59 (153)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----h-------hHHHHHHHHHHHHHhhH
Confidence 4555556 8899999999999999999953 2 23788999999999875
No 55
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0057 Score=73.62 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=7.1
Q ss_pred HHHhccCCchHH
Q 002508 824 KRWAAGKEGNIR 835 (914)
Q Consensus 824 ~~W~~GKe~niR 835 (914)
--|..-|+++|-
T Consensus 820 y~wrakke~dLs 831 (1118)
T KOG1029|consen 820 YPWRAKKENDLS 831 (1118)
T ss_pred cccccccccccc
Confidence 457766665553
No 56
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00013 Score=73.14 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=48.3
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
-|.-|+|...++..+|+++||++++.+|||++.... . .|+..|..|++||+++.+..
T Consensus 8 ~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~---~---~a~~~f~~i~~Ay~vLsd~~ 64 (237)
T COG2214 8 YYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP---K---VAEEKFKEINEAYEILSDPE 64 (237)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---h---HHHHHHHHHHHHHHHhhCHH
Confidence 355677888888999999999999999999998531 1 68899999999999998754
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.40 E-value=0.00024 Score=73.18 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=48.2
Q ss_pred cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-+||.. -++..+|+++|+++...+|||+..+. +...+.+|...+..||+||.+|++.
T Consensus 9 f~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 9 FSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 44556665 46789999999999999999999754 4445668888999999999999875
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.37 E-value=0.00028 Score=72.49 Aligned_cols=59 Identities=19% Similarity=0.292 Sum_probs=48.0
Q ss_pred cccccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 851 WQPVSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-++|.. -++..+|+++||++...+|||+.... +...+.+|...|..||+||.+|++.
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~--~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADA--PEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--cHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 44455655 47789999999999999999998753 3344568888999999999999875
No 59
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=97.35 E-value=0.00015 Score=89.13 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=49.1
Q ss_pred CCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|.-|||...++..+||++|||+++.+||||++. + .|...|..|++||++|.+.+
T Consensus 574 dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---~-----~A~ekFq~I~EAYeVLSDp~ 629 (1136)
T PTZ00341 574 LFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---N-----EGFHKFKKINEAYQILGDID 629 (1136)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c-----hHHHHHHHHHHHHHHhCCHH
Confidence 34778999999999999999999999999999863 1 26678999999999999875
No 60
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.34 E-value=0.00026 Score=72.24 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=46.2
Q ss_pred ccccccccc--cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 851 WQPVSLTDL--ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~dL--~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-+||..- ++..+|+++|+++.+.+||||... ...+..+-..|..||+||++|++.
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 455677764 778999999999999999999863 234556777899999999999874
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=97.27 E-value=0.00025 Score=68.53 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=40.8
Q ss_pred CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhh
Q 002508 850 GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFN 909 (914)
Q Consensus 850 ~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~ 909 (914)
-|+-|+|..-++..+|+++||++++.+|||+. | +. .+|..||+||++|.
T Consensus 67 Ay~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL~ 115 (116)
T PTZ00100 67 AYKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHHh
Confidence 35668888889999999999999999999983 3 22 25678999999985
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.23 E-value=0.00044 Score=69.94 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=42.4
Q ss_pred cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 860 ~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
++..+|+++|+++...+|||+..+.+ ...+.+|...|..||+||.+|++.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~--~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGS--AQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCC--hhhhHHHHHHHHHHHHHHHHhCCh
Confidence 57889999999999999999987543 334467889999999999999875
No 63
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00044 Score=72.89 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=45.1
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
+.-|||..-.+..+|||+||++++++||||++..+. -+.-|+.|+.||..+.++.
T Consensus 102 yEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~-------~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 102 YEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEG-------DEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcch-------hHHHHHHHHHHHHHhcchh
Confidence 455889999999999999999999999999975222 2457889999998887754
No 64
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00043 Score=76.30 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=55.1
Q ss_pred cccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 843 YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 843 ~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.++|...-|+-||+..-.+..+||++|++++..+|||.+... .|...|..|.+||++|.+++
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~e 99 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDEE 99 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCHH
Confidence 355766678899999999999999999999999999999753 68999999999999999875
No 65
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=96.93 E-value=0.00083 Score=81.33 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=46.9
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcC
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|.-|||...++..+||++||++++++||||+.. ..|...|..|++||++|.+..
T Consensus 5 YeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--------~eAeekFqeINEAYEVLSDP~ 58 (871)
T TIGR03835 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--------PDAASIFAEINEANDVLSNPK 58 (871)
T ss_pred hHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------hhHHHHHHHHHHHHHHhCCHH
Confidence 677899999999999999999999999999863 136778999999999998753
No 66
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.002 Score=73.44 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=59.1
Q ss_pred chHHHHHhhhcccc----CCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHH
Q 002508 832 GNIRALLATMQYVL----WPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNK 907 (914)
Q Consensus 832 ~niRaLLstL~~VL----W~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~ 907 (914)
-+||.+|--.+.-| | -.-|+-||+..+.+...||++|||+.|.+|||++... ++-|+..|+.+-+||.+
T Consensus 354 ~e~r~~l~~A~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags------q~eaE~kFkevgeAy~i 426 (486)
T KOG0550|consen 354 CEIRRTLREAQLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS------QKEAEAKFKEVGEAYTI 426 (486)
T ss_pred cchHHHHHHHHHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch------hHHHHHHHHHHHHHHHH
Confidence 45666666554444 3 2236789999999999999999999999999999742 56899999999999999
Q ss_pred hhhc
Q 002508 908 FNSE 911 (914)
Q Consensus 908 F~~~ 911 (914)
+.+.
T Consensus 427 l~d~ 430 (486)
T KOG0550|consen 427 LSDP 430 (486)
T ss_pred hcCH
Confidence 9874
No 67
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=96.71 E-value=0.002 Score=73.74 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=61.4
Q ss_pred HHHHhccCCchHHHHHhhhc------cccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHH
Q 002508 823 IKRWAAGKEGNIRALLATMQ------YVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEK 896 (914)
Q Consensus 823 i~~W~~GKe~niRaLLstL~------~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~ 896 (914)
|-.|- -|=.||+.+. .=+|+ -|.-|||..-....+||++||++.+++||||++. .+++.+..-+.
T Consensus 74 ivgWl-----~i~~L~~~I~~~k~~~~~~fD--PyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee 144 (610)
T COG5407 74 IVGWL-----VISYLISNIRTLKIEYRRGFD--PYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEE 144 (610)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHcCCC--hHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHH
Confidence 66787 2334444443 33452 3455788888888999999999999999999985 46678888999
Q ss_pred HHHHHHHHHHHhhhc
Q 002508 897 VFDLLKEAWNKFNSE 911 (914)
Q Consensus 897 vF~~LneAwe~F~~~ 911 (914)
.+..|+.||..+.++
T Consensus 145 ~y~~ItkAY~~lTd~ 159 (610)
T COG5407 145 KYKTITKAYGLLTDK 159 (610)
T ss_pred HHHHHHHHHHhhhhH
Confidence 999999999988764
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.65 E-value=0.0055 Score=68.77 Aligned_cols=108 Identities=24% Similarity=0.219 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhhHhHHHHHHHHhcc---CC--chHHHHHhhhc---cccCCCCCccccccccccchHHHHHHHHhhh
Q 002508 802 DLQAQRDQAERHRIAETLDVEIKRWAAG---KE--GNIRALLATMQ---YVLWPESGWQPVSLTDLITAAAVKKCYRKAT 873 (914)
Q Consensus 802 ~~~~~~e~~er~~l~d~id~ki~~W~~G---Ke--~niRaLLstL~---~VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~ 873 (914)
|.++--+-++-..+-+.+|.-|..+..- .+ .-+|.-|-.-+ ...--..-|+-||+-.-+.-.+|-|+|||+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlA 419 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLA 419 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHH
Confidence 4555556666677777777766665521 11 22333333322 2223355688999999999999999999999
Q ss_pred hhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhcCC
Q 002508 874 LCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEEL 913 (914)
Q Consensus 874 l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~e~ 913 (914)
+++|||--+ +.+.+..|++.|+-|-.|-++|.++|+
T Consensus 420 qkWHPDNFq----dEeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 420 QKWHPDNFQ----DEEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred HhcCCcccc----CHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 999999987 446788999999999999999999885
No 69
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.63 E-value=0.034 Score=67.13 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=12.9
Q ss_pred HHHHhc-cC----CchHHHHHhhhcc
Q 002508 823 IKRWAA-GK----EGNIRALLATMQY 843 (914)
Q Consensus 823 i~~W~~-GK----e~niRaLLstL~~ 843 (914)
+.+|.. ++ +.--|+.||.+.+
T Consensus 1102 Y~~WKskN~~~~~~~~~RAp~sv~~~ 1127 (1259)
T KOG0163|consen 1102 YHAWKSKNRKRTTMPENRAPLSVMEA 1127 (1259)
T ss_pred HHHHHhcCCccCCCCccccchhHHHH
Confidence 578984 21 1223899888854
No 70
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.57 E-value=0.056 Score=64.68 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=9.7
Q ss_pred HHhhHhHHHHHHHHhccCCchH
Q 002508 813 HRIAETLDVEIKRWAAGKEGNI 834 (914)
Q Consensus 813 ~~l~d~id~ki~~W~~GKe~ni 834 (914)
+.+.+.|-..+--|..|.++-|
T Consensus 650 ~~~d~alm~ql~pl~hgn~ns~ 671 (811)
T KOG4364|consen 650 QICDRALMVQLFPLSHGNENSI 671 (811)
T ss_pred HHHHHHHHHHHhhhhcccccch
Confidence 3334444444444554444333
No 71
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=96.48 E-value=0.069 Score=63.95 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=5.7
Q ss_pred cccccccccch
Q 002508 852 QPVSLTDLITA 862 (914)
Q Consensus 852 k~v~l~dL~~~ 862 (914)
...++++||+.
T Consensus 667 n~ns~~~ii~E 677 (811)
T KOG4364|consen 667 NENSINDIIDE 677 (811)
T ss_pred cccchHHHHHH
Confidence 34555555553
No 72
>PHA02624 large T antigen; Provisional
Probab=96.37 E-value=0.0029 Score=75.74 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=39.3
Q ss_pred ccccccccc--chHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 852 QPVSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 852 k~v~l~dL~--~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
+-|||...+ +..+||++||++++.+||||. | + ...|..||.||++|.+.
T Consensus 15 elLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-d-------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 15 DLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-D-------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-c-------HHHHHHHHHHHHHHhcH
Confidence 445666656 889999999999999999994 2 2 24689999999999763
No 73
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=96.14 E-value=0.77 Score=47.60 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002508 494 QDAQERLDREMQQREKGEE 512 (914)
Q Consensus 494 ~e~qerl~rE~~e~e~~e~ 512 (914)
.-+..|+.|++.+++++++
T Consensus 28 LAEkRRlAReQkErEE~ER 46 (171)
T PF05672_consen 28 LAEKRRLAREQKEREEQER 46 (171)
T ss_pred HHHHHHHHHHHhhhHHHHH
Confidence 3334455555555444433
No 74
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=95.84 E-value=0.015 Score=60.05 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=47.0
Q ss_pred ccccc--ccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 854 VSLTD--LITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 854 v~l~d--L~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
+||.. -++...+++.|+.+...+|||+..+. +...+.+|...=..||+||.+|++.
T Consensus 8 f~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~--~~~eq~~a~~~ss~iN~AY~tLkdP 65 (173)
T PRK01773 8 FDLPVDFQLDNALLSERYLALQKSLHPDNFANS--SAQEQRLAMQKSAEVNDALQILKDP 65 (173)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCC--CHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 44444 47899999999999999999999865 4566678888999999999999874
No 75
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=7.8 Score=48.41 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=9.6
Q ss_pred cccccccccccCcccCCCC
Q 002508 336 AEDVWLTVSEIPLFTQPTS 354 (914)
Q Consensus 336 ~~dv~ltvS~ipl~t~Pt~ 354 (914)
-+-||.+|||--|.-.-||
T Consensus 441 vSqiY~sIs~~~l~~La~F 459 (988)
T KOG2072|consen 441 VSQIYESISFERLYKLAPF 459 (988)
T ss_pred HHHHHHHHhHHHHHHHHhh
Confidence 3445666665555443333
No 76
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0056 Score=66.07 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=54.2
Q ss_pred HHHHhhhccccCCC--C----CccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002508 835 RALLATMQYVLWPE--S----GWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF 908 (914)
Q Consensus 835 RaLLstL~~VLW~~--~----~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F 908 (914)
-.||-+|-.+|-++ | -|.-||++.-..-.+|.++||++.+.+|||++... + +...|..|..||+++
T Consensus 14 ~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~----e----~k~~F~~iAtayeil 85 (329)
T KOG0722|consen 14 ILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP----E----SKKLFVKIATAYEIL 85 (329)
T ss_pred HHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc----h----hhhhhhhhhcccccc
Confidence 44555554444432 2 36778898888889999999999999999999842 2 337899999999999
Q ss_pred hhcC
Q 002508 909 NSEE 912 (914)
Q Consensus 909 ~~~e 912 (914)
++.+
T Consensus 86 kd~e 89 (329)
T KOG0722|consen 86 KDNE 89 (329)
T ss_pred cchh
Confidence 8865
No 77
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=95.55 E-value=2.3 Score=47.04 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=4.0
Q ss_pred ccCcccCCCC
Q 002508 345 EIPLFTQPTS 354 (914)
Q Consensus 345 ~ipl~t~Pt~ 354 (914)
.|-+..||.+
T Consensus 187 ~ir~vdipic 196 (445)
T KOG2891|consen 187 EIRNVDIPIC 196 (445)
T ss_pred cceecCCccc
Confidence 3334444433
No 78
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=95.14 E-value=1.1 Score=51.87 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002508 649 QRAERAAVQRAASEARER 666 (914)
Q Consensus 649 ~~aEr~A~era~~Ear~r 666 (914)
.++..+++.++++.++.+
T Consensus 205 akaaa~akAkaaalak~~ 222 (430)
T PRK07735 205 AKAAAAAKAKAAALAKQK 222 (430)
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 344444555555555544
No 79
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.014 Score=61.60 Aligned_cols=53 Identities=30% Similarity=0.457 Sum_probs=40.8
Q ss_pred ccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 853 PVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 853 ~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
-|+|..-++..+|+++|+++++.+||||+.. . +..|+..|..|++||+++.+.
T Consensus 8 ~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~-----~-~~~~~~~~~~~~ea~~~ls~~ 60 (306)
T KOG0714|consen 8 ILGIARSASEEDIKKAYRKLALKYHPDKNPS-----P-KEVAEAKFKEIAEAYEVLSDP 60 (306)
T ss_pred HhCccccccHHHHHHHHHHHHHhhCCCCCCC-----c-hhhHHHHHhhhhccccccCCH
Confidence 3455544555699999999999999999653 2 446666999999999988754
No 80
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=94.98 E-value=0.023 Score=64.28 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=29.7
Q ss_pred ccccccccccchHHHHHHHHhhhhhcCCCccc
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQ 882 (914)
Q Consensus 851 Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~ 882 (914)
|+-|+|..-++..+||++||++++.+|||++.
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~ 34 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK 34 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 66788999999999999999999999999986
No 81
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.92 E-value=1.9 Score=51.34 Aligned_cols=12 Identities=17% Similarity=0.291 Sum_probs=6.3
Q ss_pred hHhHHHHHHHHh
Q 002508 816 AETLDVEIKRWA 827 (914)
Q Consensus 816 ~d~id~ki~~W~ 827 (914)
.|.-..+|..|+
T Consensus 425 id~~tLev~kes 436 (489)
T PF05262_consen 425 IDPETLEVKKES 436 (489)
T ss_pred cCcccceeeeec
Confidence 344455555555
No 82
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=94.91 E-value=2.5 Score=49.11 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=4.4
Q ss_pred cchhhhhcc
Q 002508 750 DDLSSIFGA 758 (914)
Q Consensus 750 dd~~s~fg~ 758 (914)
+.|...||+
T Consensus 283 ~~L~e~fg~ 291 (430)
T PRK07735 283 EVIKEKLGE 291 (430)
T ss_pred HHHHHHhhh
Confidence 345555554
No 83
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.45 E-value=0.7 Score=56.47 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=7.7
Q ss_pred hhcCCCcccc
Q 002508 874 LCIHPDKVQQ 883 (914)
Q Consensus 874 l~vHPDKl~~ 883 (914)
+.+||||-+.
T Consensus 1185 m~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1185 MELHPDKPPI 1194 (1259)
T ss_pred heecCCCCCe
Confidence 5589999765
No 84
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=94.39 E-value=11 Score=42.18 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=4.1
Q ss_pred CCCCchhhh
Q 002508 433 VPSPEDVES 441 (914)
Q Consensus 433 ~~~~~~~e~ 441 (914)
+|++...|-
T Consensus 28 ~FDP~aLER 36 (276)
T PF12037_consen 28 GFDPEALER 36 (276)
T ss_pred CCCcHHHHH
Confidence 345554444
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.89 Score=55.92 Aligned_cols=13 Identities=15% Similarity=0.355 Sum_probs=9.1
Q ss_pred cCCchHHHHHhhh
Q 002508 829 GKEGNIRALLATM 841 (914)
Q Consensus 829 GKe~niRaLLstL 841 (914)
-...|||..+|-+
T Consensus 468 ~~~~~lRSPIcCi 480 (1064)
T KOG1144|consen 468 ESTENLRSPICCI 480 (1064)
T ss_pred ccchhcCCceEEE
Confidence 3456888888765
No 86
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=93.79 E-value=1.1 Score=53.29 Aligned_cols=6 Identities=50% Similarity=1.498 Sum_probs=3.0
Q ss_pred HHhccC
Q 002508 825 RWAAGK 830 (914)
Q Consensus 825 ~W~~GK 830 (914)
.|..|-
T Consensus 865 rWqGGe 870 (940)
T KOG4661|consen 865 RWQGGE 870 (940)
T ss_pred cccCCc
Confidence 466444
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.092 Score=65.55 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 862 AAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 862 ~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
+.+|+++|+|+..++||||++- ....|..+|+||+.+...
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999983 346899999999998754
No 88
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.33 E-value=1 Score=55.33 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.5
Q ss_pred chHHHHHhhh
Q 002508 832 GNIRALLATM 841 (914)
Q Consensus 832 ~niRaLLstL 841 (914)
.|||.--|+|
T Consensus 554 tnlRsrgssl 563 (1064)
T KOG1144|consen 554 TNLRSRGSSL 563 (1064)
T ss_pred hhhhhccccc
Confidence 5777665555
No 89
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.32 E-value=15 Score=40.96 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=4.5
Q ss_pred cccccccc
Q 002508 335 SAEDVWLT 342 (914)
Q Consensus 335 ~~~dv~lt 342 (914)
..|.|||.
T Consensus 148 rpdti~la 155 (445)
T KOG2891|consen 148 RPDTIHLA 155 (445)
T ss_pred CCCceeec
Confidence 45666654
No 90
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.23 Score=47.72 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=39.2
Q ss_pred cccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 854 VSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 854 v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|+|+.-++...||.+.|++.+.-|||+..+ + |||- .||+|++.+...
T Consensus 62 L~v~~s~~k~KikeaHrriM~~NHPD~GGS---P----YlAs----KINEAKdlLe~~ 108 (112)
T KOG0723|consen 62 LGVTPSLDKDKIKEAHRRIMLANHPDRGGS---P----YLAS----KINEAKDLLEGT 108 (112)
T ss_pred hCCCccccHHHHHHHHHHHHHcCCCcCCCC---H----HHHH----HHHHHHHHHhcc
Confidence 778888899999999999999999999753 2 6665 579999988654
No 91
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=0.31 Score=53.41 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=39.1
Q ss_pred cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhhc
Q 002508 860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 860 ~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
.++.+|.++.++-++.+||||....| +. -|...|.+|+.||++|.+.
T Consensus 58 a~~~qi~kah~kkv~kyHPDk~aa~g-~~----~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 58 AIPPQILKAHKKKVYKYHPDKTAAGG-NK----GCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred CCcHHHHHHHHHHHHHhCccchhccC-CC----CcHHHHHHHHHHHHHhccH
Confidence 34789999999999999999986533 32 3788999999999999764
No 92
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=88.63 E-value=7.7 Score=46.54 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=8.5
Q ss_pred cccchhhhhccCCC
Q 002508 748 IVDDLSSIFGAAGS 761 (914)
Q Consensus 748 ~~dd~~s~fg~~~~ 761 (914)
|.|-|.|+||+.|.
T Consensus 360 I~dkl~s~~~~~~~ 373 (591)
T KOG2412|consen 360 IFDKLDSLFGGIPD 373 (591)
T ss_pred HHHHHHHHhcCCCC
Confidence 44556666766653
No 93
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.57 E-value=0.52 Score=48.50 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=48.0
Q ss_pred cccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 002508 852 QPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKF 908 (914)
Q Consensus 852 k~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F 908 (914)
..+++..-.+...|++.|++++-..|||++...|..++...+++..+..|++||..+
T Consensus 117 ~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 117 KVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred HHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 334444445568999999999999999999998888888888999999999999864
No 94
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.19 E-value=8.3 Score=42.21 Aligned_cols=12 Identities=42% Similarity=0.398 Sum_probs=7.5
Q ss_pred cccccc------ccCccc
Q 002508 339 VWLTVS------EIPLFT 350 (914)
Q Consensus 339 v~ltvS------~ipl~t 350 (914)
|||-|+ ||+||+
T Consensus 5 v~vlVaa~llV~~i~l~l 22 (299)
T KOG3054|consen 5 VAVLVAAALLVAVILLFL 22 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 565555 777754
No 95
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=82.49 E-value=36 Score=41.19 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=2.8
Q ss_pred hhhhhc
Q 002508 692 LESFFS 697 (914)
Q Consensus 692 lesFfs 697 (914)
|.+||+
T Consensus 364 l~s~~~ 369 (591)
T KOG2412|consen 364 LDSLFG 369 (591)
T ss_pred HHHHhc
Confidence 445553
No 96
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.00 E-value=1.6e+02 Score=35.76 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=4.2
Q ss_pred Ccccccch
Q 002508 745 TTNIVDDL 752 (914)
Q Consensus 745 ~~~~~dd~ 752 (914)
+.-|+||.
T Consensus 236 vd~iiddt 243 (514)
T TIGR03319 236 VDLIIDDT 243 (514)
T ss_pred ceEEEcCC
Confidence 44466655
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=76.65 E-value=11 Score=48.09 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=7.5
Q ss_pred cccccccccccc
Q 002508 335 SAEDVWLTVSEI 346 (914)
Q Consensus 335 ~~~dv~ltvS~i 346 (914)
..-||||.+..+
T Consensus 678 ~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 678 DFEDVWLNLAHC 689 (1018)
T ss_pred hCCceeeeHHHH
Confidence 455778776643
No 98
>PRK12704 phosphodiesterase; Provisional
Probab=74.85 E-value=2.1e+02 Score=34.90 Aligned_cols=10 Identities=30% Similarity=0.215 Sum_probs=5.0
Q ss_pred HhhhhhcCCC
Q 002508 870 RKATLCIHPD 879 (914)
Q Consensus 870 rKA~l~vHPD 879 (914)
..+|+.+|-+
T Consensus 400 ~~aI~~HHe~ 409 (520)
T PRK12704 400 INAIAAHHGD 409 (520)
T ss_pred HHHHHHcCCC
Confidence 3455555543
No 99
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=74.72 E-value=23 Score=36.62 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002508 449 AAMKEAMDRAEAKFRH 464 (914)
Q Consensus 449 aa~~~A~~~Ae~k~~~ 464 (914)
|.+..|+..|+.++|+
T Consensus 108 a~LseAL~~Ad~~aRe 123 (158)
T PF02731_consen 108 AKLSEALYIADRKARE 123 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566778888866665
No 100
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.82 E-value=29 Score=38.24 Aligned_cols=8 Identities=63% Similarity=1.066 Sum_probs=4.6
Q ss_pred cchhhhhc
Q 002508 750 DDLSSIFG 757 (914)
Q Consensus 750 dd~~s~fg 757 (914)
+||++.||
T Consensus 218 edLas~f~ 225 (299)
T KOG3054|consen 218 EDLASEFG 225 (299)
T ss_pred HHHHHHhC
Confidence 55666664
No 101
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.38 E-value=1.5e+02 Score=32.57 Aligned_cols=8 Identities=0% Similarity=0.090 Sum_probs=3.3
Q ss_pred HhhHhHHH
Q 002508 814 RIAETLDV 821 (914)
Q Consensus 814 ~l~d~id~ 821 (914)
.-.|.|+.
T Consensus 208 T~~D~~h~ 215 (246)
T PF00769_consen 208 TQLDIIHA 215 (246)
T ss_dssp -HHHHHHH
T ss_pred chhHHHHH
Confidence 33455544
No 102
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=72.76 E-value=30 Score=43.11 Aligned_cols=17 Identities=41% Similarity=1.054 Sum_probs=7.8
Q ss_pred CCCCCCC-CCCCCCCCcc
Q 002508 354 SAPPPSR-PPPPRPTRVS 370 (914)
Q Consensus 354 ~apPpSr-PPPP~P~~~~ 370 (914)
..||+-+ ||||||+.++
T Consensus 1032 ~~pP~~g~P~PpPp~~~~ 1049 (1106)
T KOG0162|consen 1032 RPPPPAGRPKPPPPAKPP 1049 (1106)
T ss_pred CCCCCCCCCCccCCCCCC
Confidence 3344433 5555554443
No 103
>PRK00106 hypothetical protein; Provisional
Probab=62.54 E-value=3.7e+02 Score=33.04 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=4.0
Q ss_pred Ccccccch
Q 002508 745 TTNIVDDL 752 (914)
Q Consensus 745 ~~~~~dd~ 752 (914)
+.-|.||.
T Consensus 257 vdliiddt 264 (535)
T PRK00106 257 IDVIIDDT 264 (535)
T ss_pred ceEEEcCC
Confidence 33455654
No 104
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=60.42 E-value=48 Score=39.93 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=8.0
Q ss_pred hHhHHHHHHHHhc
Q 002508 816 AETLDVEIKRWAA 828 (914)
Q Consensus 816 ~d~id~ki~~W~~ 828 (914)
.--|-.+|+.|..
T Consensus 450 ~~gv~~~i~~w~~ 462 (492)
T PF02029_consen 450 KVGVASRINQWLT 462 (492)
T ss_pred hhHHHHHHHHhhc
Confidence 3445566777774
No 105
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=59.30 E-value=39 Score=42.47 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=12.0
Q ss_pred CCCCccccccCccCCCCCCccccchhh
Q 002508 127 MEDPFGVSESTSTHVGSSSEVFTDRLE 153 (914)
Q Consensus 127 ~dDpF~vlestS~~~~sSs~~FtDpLe 153 (914)
++|+|-++-.+.+.+ .+-++|--.|-
T Consensus 384 ~~~~f~lL~n~vkdT-~aE~yfLSILQ 409 (1102)
T KOG1924|consen 384 ANEVFELLANTVKDT-GAEPYFLSILQ 409 (1102)
T ss_pred HHHHHHHHHHhhhhc-cccchHHHHHH
Confidence 345666655555432 12244444443
No 106
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=58.35 E-value=22 Score=40.15 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=4.7
Q ss_pred cccCCCCCCC
Q 002508 348 LFTQPTSAPP 357 (914)
Q Consensus 348 l~t~Pt~apP 357 (914)
++.||+..|+
T Consensus 197 ~TDq~~~~p~ 206 (321)
T PF07946_consen 197 FTDQPSGKPP 206 (321)
T ss_pred EECCCCCCCC
Confidence 4455554333
No 107
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.96 E-value=4.6e+02 Score=32.36 Aligned_cols=8 Identities=0% Similarity=-0.263 Sum_probs=3.4
Q ss_pred CCCCCchh
Q 002508 432 EVPSPEDV 439 (914)
Q Consensus 432 ~~~~~~~~ 439 (914)
++++....
T Consensus 206 ~yLda~G~ 213 (548)
T COG2268 206 NYLDALGR 213 (548)
T ss_pred hhhhhcCh
Confidence 44444433
No 108
>PF15195 TMEM210: TMEM210 family
Probab=53.68 E-value=9.4 Score=36.30 Aligned_cols=20 Identities=40% Similarity=0.845 Sum_probs=10.3
Q ss_pred CcccCCCCCCCCCCCCCCCC
Q 002508 347 PLFTQPTSAPPPSRPPPPRP 366 (914)
Q Consensus 347 pl~t~Pt~apPpSrPPPP~P 366 (914)
.|.++|..+.|+..||||||
T Consensus 94 ~l~~i~m~~~p~~pppppP~ 113 (116)
T PF15195_consen 94 SLMAITMEASPEEPPPPPPP 113 (116)
T ss_pred ceeEeecCCCCCCCCcCcCC
Confidence 34555655555554555333
No 109
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=49.25 E-value=5.7e+02 Score=31.18 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=4.6
Q ss_pred HhhhhhcCC
Q 002508 870 RKATLCIHP 878 (914)
Q Consensus 870 rKA~l~vHP 878 (914)
..+|+.+|-
T Consensus 394 ~~aI~~HH~ 402 (514)
T TIGR03319 394 VNAIAAHHG 402 (514)
T ss_pred HHHHHHhCC
Confidence 445555553
No 110
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=48.83 E-value=1.4e+02 Score=35.16 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002508 450 AMKEAMDRAEAKFRHAKEMR 469 (914)
Q Consensus 450 a~~~A~~~Ae~k~~~ake~r 469 (914)
-+.+|+--|+.|+|++=++|
T Consensus 282 KlseALy~adrKAReeV~~r 301 (506)
T KOG2441|consen 282 KLSEALYIADRKAREEVRMR 301 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777887777754443
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=48.35 E-value=1.2e+02 Score=39.43 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=3.0
Q ss_pred ccCcccC
Q 002508 345 EIPLFTQ 351 (914)
Q Consensus 345 ~ipl~t~ 351 (914)
||--+..
T Consensus 610 ~~~~l~~ 616 (1018)
T KOG2002|consen 610 YIQALHN 616 (1018)
T ss_pred HHHHhcc
Confidence 4444433
No 112
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=47.42 E-value=38 Score=33.04 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=37.7
Q ss_pred cchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 002508 860 ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNS 910 (914)
Q Consensus 860 ~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe~F~~ 910 (914)
+...+|+.+.|...+.||||-..+ .++++.+=+.-+..||.-.+.+..
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~---~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQ---HPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCccccc---ChHHHHhhHHHHHHHHHHHHHHhc
Confidence 345789999999999999999875 456777888888888877666554
No 113
>PLN02316 synthase/transferase
Probab=46.06 E-value=3.3e+02 Score=36.05 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=3.8
Q ss_pred cccccccc
Q 002508 335 SAEDVWLT 342 (914)
Q Consensus 335 ~~~dv~lt 342 (914)
...+||+.
T Consensus 169 ~~~~v~i~ 176 (1036)
T PLN02316 169 NEPDVLIM 176 (1036)
T ss_pred CCCceEEE
Confidence 34455544
No 114
>PRK12704 phosphodiesterase; Provisional
Probab=45.75 E-value=6.5e+02 Score=30.78 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=4.1
Q ss_pred Ccccccch
Q 002508 745 TTNIVDDL 752 (914)
Q Consensus 745 ~~~~~dd~ 752 (914)
+.-|.||.
T Consensus 242 vd~iiddt 249 (520)
T PRK12704 242 VDLIIDDT 249 (520)
T ss_pred CeEEEcCC
Confidence 34455654
No 115
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=44.39 E-value=5.2e+02 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.038 Sum_probs=7.4
Q ss_pred CCCCCchhhhhHHH
Q 002508 432 EVPSPEDVESSIAA 445 (914)
Q Consensus 432 ~~~~~~~~e~~~~~ 445 (914)
....++|-+..+-+
T Consensus 24 ~~~~~FDP~aLERa 37 (276)
T PF12037_consen 24 TTASGFDPEALERA 37 (276)
T ss_pred cccCCCCcHHHHHH
Confidence 44555555556554
No 116
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=43.38 E-value=70 Score=38.51 Aligned_cols=20 Identities=10% Similarity=0.303 Sum_probs=13.8
Q ss_pred cccccccc-ccchHHHHHHHH
Q 002508 851 WQPVSLTD-LITAAAVKKCYR 870 (914)
Q Consensus 851 Wk~v~l~d-L~~~~~VKkaYr 870 (914)
+++++|+. +||...|-.+|.
T Consensus 642 ~kl~gmgpk~Vt~~mie~lYk 662 (708)
T KOG3654|consen 642 RKLTGMGPKMVTKKMIEGLYK 662 (708)
T ss_pred hhhhccCchhhHHHHHHHHhh
Confidence 34566666 677777888886
No 117
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=41.14 E-value=4.4e+02 Score=35.42 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 002508 173 GGVFDDL 179 (914)
Q Consensus 173 ~~~FdDl 179 (914)
.++|+.+
T Consensus 1395 rgvsEnI 1401 (1605)
T KOG0260|consen 1395 RGVSENI 1401 (1605)
T ss_pred ccceeee
Confidence 3344443
No 118
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=7.5e+02 Score=29.99 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=5.0
Q ss_pred cCCchHHHHHhhh
Q 002508 829 GKEGNIRALLATM 841 (914)
Q Consensus 829 GKe~niRaLLstL 841 (914)
|-+.-.|.|.--|
T Consensus 516 GeEERfkll~lYl 528 (630)
T KOG0742|consen 516 GEEERFKLLNLYL 528 (630)
T ss_pred ChHHHHHHHHHHH
Confidence 3333334333333
No 119
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=40.01 E-value=1.1e+02 Score=36.74 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 002508 512 EQRRLERERE 521 (914)
Q Consensus 512 ~~er~erEre 521 (914)
.+.-+++.+.
T Consensus 325 yq~sle~Dr~ 334 (460)
T KOG1363|consen 325 YQASLEADRV 334 (460)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 120
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=38.75 E-value=2.4e+02 Score=33.99 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 002508 448 AAAMKEAMDRAE 459 (914)
Q Consensus 448 aaa~~~A~~~Ae 459 (914)
+--+|-|||.|+
T Consensus 509 q~llkva~dnar 520 (641)
T KOG3915|consen 509 QGLLKVAIDNAR 520 (641)
T ss_pred HHHHHHHHHHHH
Confidence 345666776665
No 121
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=38.33 E-value=39 Score=36.94 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=46.7
Q ss_pred chHHHHHhhhcc---ccCCCCCccccccccccchHHHHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHHHHH
Q 002508 832 GNIRALLATMQY---VLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWN 906 (914)
Q Consensus 832 ~niRaLLstL~~---VLW~~~~Wk~v~l~dL~~~~~VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~LneAwe 906 (914)
+-||--|.+||. ++- +| |.-|++.+-++...|.-+|.+++-.+|||-.... ++ -.-|..|-+||-
T Consensus 30 giirnrll~~~kske~~~-e~-fril~v~e~~~adevr~af~~lakq~hpdsgs~~-ad-------aa~f~qideafr 97 (342)
T KOG0568|consen 30 GIIRNRLLHLHKSKEKIM-EC-FRILGVEEGADADEVREAFHDLAKQVHPDSGSEE-AD-------AARFIQIDEAFR 97 (342)
T ss_pred hhHHHHHHHHhhhHHHHH-HH-HHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc-cc-------HHHHHHHHHHHH
Confidence 456666666654 332 22 5678999999999999999999999999987642 22 235667777766
No 122
>PRK00106 hypothetical protein; Provisional
Probab=37.06 E-value=8.9e+02 Score=29.89 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 002508 661 SEARERAAAEAR 672 (914)
Q Consensus 661 ~Ear~ra~~eA~ 672 (914)
.+++..++++|+
T Consensus 195 ~~a~~~a~~~a~ 206 (535)
T PRK00106 195 REVKDRSDKMAK 206 (535)
T ss_pred HHHHHHHHHHHH
Confidence 344444445544
No 123
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=36.11 E-value=12 Score=39.60 Aligned_cols=7 Identities=43% Similarity=0.852 Sum_probs=3.1
Q ss_pred cchhhhh
Q 002508 750 DDLSSIF 756 (914)
Q Consensus 750 dd~~s~f 756 (914)
+||++.|
T Consensus 117 edla~~f 123 (188)
T PF09756_consen 117 EDLAAEF 123 (188)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 4444444
No 124
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=34.65 E-value=21 Score=45.58 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 002508 104 RSTSESSQSQKPPSNS 119 (914)
Q Consensus 104 r~~~~~~~~~k~s~~s 119 (914)
|+.+-+|++..|+|.+
T Consensus 141 kdidqdnrstSpsipS 156 (982)
T PF03154_consen 141 KDIDQDNRSTSPSIPS 156 (982)
T ss_pred cccccccccCCCCCCC
Confidence 3444445555554443
No 125
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=33.50 E-value=8.9e+02 Score=28.81 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002508 618 AAEARERANAEAREK 632 (914)
Q Consensus 618 a~Earer~~~Eaker 632 (914)
+.|+++++..|+.++
T Consensus 318 ~qeakek~~KEAqar 332 (442)
T PF06637_consen 318 SQEAKEKAGKEAQAR 332 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 126
>PF05038 Cytochrom_B558a: Cytochrome Cytochrome b558 alpha-subunit; InterPro: IPR007732 Flavocytochrome b558 is the catalytic core of the respiratory-burst oxidase, an enzyme complex that catalyzes the NADPH-dependent reduction of O2 into the superoxide anion O2 in phagocytic cells. Flavocytochrome b558 is anchored in the plasma membrane. It is a heterodimer that consists of a large glycoprotein gp91phox (phox forphagocyte oxidase) (beta subunit) and a small protein p22phox (alpha subunit). The other components of the respiratory-burst oxidase are water-soluble proteins of cytosolic origin, namely p67phox, p47phox, p40phox and Rac. Upon cell stimulation, they assemble with the membrane-bound flavocytochrome b558 which becomes activated and generates O2- []. ; GO: 0020037 heme binding; PDB: 1WLP_A.
Probab=33.36 E-value=12 Score=39.05 Aligned_cols=19 Identities=47% Similarity=0.966 Sum_probs=1.8
Q ss_pred ccCcccCC--------CCCCCCCCCCC
Q 002508 345 EIPLFTQP--------TSAPPPSRPPP 363 (914)
Q Consensus 345 ~ipl~t~P--------t~apPpSrPPP 363 (914)
|.|+...| +-++|||.|||
T Consensus 130 W~Pi~~~~~~r~~~~~~i~qpPs~PPP 156 (186)
T PF05038_consen 130 WVPIEPKPKERPQVGGTIKQPPSNPPP 156 (186)
T ss_dssp ----------------------SS---
T ss_pred ceecCCCCCcCCCCCCcCCCCCCCccC
Confidence 77776555 34588888888
No 127
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=32.45 E-value=82 Score=37.01 Aligned_cols=26 Identities=42% Similarity=0.953 Sum_probs=15.0
Q ss_pred cCCCCCCCCCC--CCCCCCCCccccccc
Q 002508 350 TQPTSAPPPSR--PPPPRPTRVSKLETG 375 (914)
Q Consensus 350 t~Pt~apPpSr--PPPP~P~~~~k~~~~ 375 (914)
--|+.+||+.. ||||+|++|+.++..
T Consensus 520 g~~lp~~~~~qr~PpppaP~rpp~~~a~ 547 (563)
T KOG1785|consen 520 GKPLPAPPNPQRDPPPPAPPRPPRLSAS 547 (563)
T ss_pred CCCCCCCCCcccCCCCCCCCCCCCCCcc
Confidence 34555555543 556667677665444
No 128
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=32.14 E-value=26 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH-hhHhHHHHHHH
Q 002508 803 LQAQRDQAERHR-IAETLDVEIKR 825 (914)
Q Consensus 803 ~~~~~e~~er~~-l~d~id~ki~~ 825 (914)
|.+.+..+||.. |...--++|++
T Consensus 815 laaer~haer~a~l~~dp~~rlqm 838 (982)
T PF03154_consen 815 LAAERQHAERMAALANDPLARLQM 838 (982)
T ss_pred hhHHHHHHHHHHhhcCCchHhhhh
Confidence 444455555553 43333334443
No 129
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=31.83 E-value=1.7e+02 Score=27.94 Aligned_cols=72 Identities=17% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCchHHHHHhhhccccCCCCCccccccccccchHH---HHHHHHhhhhhcCCCccccCCCChHHHHHHHHHHHHHHH
Q 002508 830 KEGNIRALLATMQYVLWPESGWQPVSLTDLITAAA---VKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKE 903 (914)
Q Consensus 830 Ke~niRaLLstL~~VLW~~~~Wk~v~l~dL~~~~~---VKkaYrKA~l~vHPDKl~~~g~t~eqk~iAe~vF~~Lne 903 (914)
.+.+|=.+|..|+..|||+-.|.+-.. .-++.+ -+..=+..++..-||-+..-=....-+.-+..||..|+.
T Consensus 36 se~~v~~~i~~l~~~lwP~g~~~~~~~--~Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 36 SEEQVARYIQLLRESLWPNGKLAEPPP--PRTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 356788899999999999775554443 223222 222222344667788876421122345567788887764
No 130
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=2.9e+02 Score=31.28 Aligned_cols=6 Identities=33% Similarity=0.518 Sum_probs=2.7
Q ss_pred ccCccc
Q 002508 345 EIPLFT 350 (914)
Q Consensus 345 ~ipl~t 350 (914)
|-|||+
T Consensus 134 w~pvFe 139 (379)
T COG5269 134 WEPVFE 139 (379)
T ss_pred HHHHHH
Confidence 444543
No 131
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=31.04 E-value=86 Score=33.42 Aligned_cols=47 Identities=15% Similarity=0.389 Sum_probs=32.6
Q ss_pred HHHhhhccccCCCC------------Cccccccccccch--HHHHHHHHhhhhhcCCCccc
Q 002508 836 ALLATMQYVLWPES------------GWQPVSLTDLITA--AAVKKCYRKATLCIHPDKVQ 882 (914)
Q Consensus 836 aLLstL~~VLW~~~------------~Wk~v~l~dL~~~--~~VKkaYrKA~l~vHPDKl~ 882 (914)
..--+.-.+||+.+ .=..|.|.+++++ ..+..+|-|+|..+||..+.
T Consensus 102 q~~~~~t~~LwdeSi~LAEkIV~QaiDtR~l~vlPiLt~viQ~LP~sFeKL~vTvHPET~e 162 (228)
T PRK06800 102 ETAYEWTELLWDQSFQLAEKIVNQAVDTRLLDVLPILTGIVQTLPTSFEKLNITVHPETFE 162 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchhHHHhheecCHHHHH
Confidence 34445667788654 2234666666665 56889999999999997653
No 132
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=29.14 E-value=1.9e+02 Score=34.48 Aligned_cols=6 Identities=67% Similarity=1.364 Sum_probs=2.9
Q ss_pred CCCCCC
Q 002508 354 SAPPPS 359 (914)
Q Consensus 354 ~apPpS 359 (914)
.|||||
T Consensus 144 ~tppps 149 (506)
T KOG2507|consen 144 VTPPPS 149 (506)
T ss_pred cCCCCC
Confidence 444554
No 133
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.93 E-value=9.5e+02 Score=30.84 Aligned_cols=6 Identities=67% Similarity=0.639 Sum_probs=2.3
Q ss_pred HHHhhh
Q 002508 836 ALLATM 841 (914)
Q Consensus 836 aLLstL 841 (914)
+++..|
T Consensus 717 a~~~g~ 722 (771)
T TIGR01069 717 ALLAGY 722 (771)
T ss_pred HHHCCC
Confidence 333333
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=27.39 E-value=8.4e+02 Score=30.78 Aligned_cols=145 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhchhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 002508 467 EMRERESFKAARSRESVQPDREERATQQDAQERLDREMQQREKGEEQRRLEREREREREEKEREKKRIEKEKERA----- 541 (914)
Q Consensus 467 e~rere~~~~~R~rE~~~~e~e~~~~~~e~qerl~rE~~e~e~~e~~er~erErereree~ere~r~~E~e~e~~----- 541 (914)
++|.|++-.+..-.+.....+..+.+..+-+.--+-.-...+.++++...++|+++.+++--...+..+..+.+.
T Consensus 245 ~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~ 324 (668)
T KOG2253|consen 245 DRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKERLKEKSRQYKREKEAKRLKEFLEDY 324 (668)
T ss_pred HHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002508 542 ---------------REIEKEREKARQAVERATREARERAAAEARLKAERAAVDKANAAARERAERAAVQRAQAEARERA 606 (914)
Q Consensus 542 ---------------~e~e~E~ek~R~a~era~rEa~era~~Ear~kaErea~~kae~ear~raE~ea~~Ra~~EareRa 606 (914)
.++.+.++++.++-.+.+....+.-++..|..-+.++..--.++.|...+++++.-.+.-...+.
T Consensus 325 DD~rdd~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~k 404 (668)
T KOG2253|consen 325 DDERDDPKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAEDPSAEEERNMEEEEALDEEEDDEAVRK 404 (668)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHhhhhhhcchhhHHHHhh
Q ss_pred HHHHH
Q 002508 607 AAEAR 611 (914)
Q Consensus 607 ~~Ear 611 (914)
..+..
T Consensus 405 e~e~~ 409 (668)
T KOG2253|consen 405 EPEER 409 (668)
T ss_pred Ccccc
No 135
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.08 E-value=1.5e+03 Score=28.98 Aligned_cols=8 Identities=25% Similarity=0.144 Sum_probs=4.2
Q ss_pred ccCCCCCC
Q 002508 66 LGNLGKKE 73 (914)
Q Consensus 66 lgg~g~~~ 73 (914)
.=|||-+.
T Consensus 165 ~~g~~~~~ 172 (697)
T PF09726_consen 165 TLGFGFKS 172 (697)
T ss_pred EeeccHHH
Confidence 33565555
No 136
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=25.49 E-value=4.1e+02 Score=32.46 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=6.4
Q ss_pred cccchhhhhccCC
Q 002508 147 VFTDRLEEIGKFG 159 (914)
Q Consensus 147 ~FtDpLe~igK~~ 159 (914)
.|+-..-.|||..
T Consensus 121 ~fakqrqklgksa 133 (708)
T KOG3654|consen 121 IFAKQRQKLGKSA 133 (708)
T ss_pred HHHHHHHHhchhh
Confidence 3444444555544
No 137
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=8.9e+02 Score=27.60 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=11.9
Q ss_pred HHHHhccCC---chHHHHHhhhccccCC
Q 002508 823 IKRWAAGKE---GNIRALLATMQYVLWP 847 (914)
Q Consensus 823 i~~W~~GKe---~niRaLLstL~~VLW~ 847 (914)
|..|..-+. ..==.|+.++..|+..
T Consensus 236 VR~wVd~n~~~~~~P~~f~t~fPR~tf~ 263 (290)
T KOG2689|consen 236 VRLWVDLNRGDGLDPYSFHTGFPRVTFT 263 (290)
T ss_pred HHHHHHHhccCCCCCeeeecCCCceecc
Confidence 677875322 2122344555555543
No 138
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.45 E-value=8.5e+02 Score=32.15 Aligned_cols=12 Identities=25% Similarity=0.066 Sum_probs=5.7
Q ss_pred ccccCcccCCCC
Q 002508 343 VSEIPLFTQPTS 354 (914)
Q Consensus 343 vS~ipl~t~Pt~ 354 (914)
++|-++..++..
T Consensus 1039 ~s~~~~~~~~~~ 1050 (1080)
T KOG0566|consen 1039 QSNNGLNQQAPA 1050 (1080)
T ss_pred hhccccCCCCCC
Confidence 335555555443
No 139
>PRK12705 hypothetical protein; Provisional
Probab=20.84 E-value=1.6e+03 Score=27.57 Aligned_cols=9 Identities=22% Similarity=0.076 Sum_probs=5.3
Q ss_pred HhhhhhcCC
Q 002508 870 RKATLCIHP 878 (914)
Q Consensus 870 rKA~l~vHP 878 (914)
-.+|+.+|=
T Consensus 388 v~aI~~HHe 396 (508)
T PRK12705 388 INAIASHHN 396 (508)
T ss_pred HHHHHHhCC
Confidence 456666664
Done!