Query 002508
Match_columns 914
No_of_seqs 401 out of 649
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 15:48:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002508.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1229-1233//hhsearch_pdb/002508hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qwo_B Putative tyrosine-prote 1.0 1 1 177.4 7.0 91 817-911 1-92 (92)
2 3ag7_A Putative uncharacterize 1.0 1 1 164.9 9.3 100 814-913 6-105 (106)
3 1n4c_A Auxilin; four helix bun 1.0 1 1 164.9 11.9 94 815-912 83-177 (182)
4 3bvo_A CO-chaperone protein HS 1.0 1 1 72.7 3.5 87 823-911 11-106 (207)
5 2ys8_A RAB-related GTP-binding 1.0 1 1 72.4 4.3 57 848-912 27-83 (90)
6 1wjz_A 1700030A21RIK protein; 1.0 1 1 72.0 6.1 63 849-912 17-79 (94)
7 1iur_A KIAA0730 protein; DNAJ 1.0 1 1 69.5 4.4 55 851-911 19-73 (88)
8 1fpo_A HSC20, chaperone protei 1.0 1 1 68.5 5.8 59 851-911 4-64 (171)
9 2l6l_A DNAJ homolog subfamily 1.0 1 1 68.1 5.4 61 851-912 13-73 (155)
10 2yua_A Williams-beuren syndrom 1.0 1 1 67.9 4.9 54 851-911 20-73 (99)
No 1
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=1.00 E-value=1 Score=177.41 Aligned_cols=91 Identities=43% Similarity=0.794 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 75799999873267751889986101004899-99633665432235788999885443137985356797868899999
Q 002508 817 ETLDVEIKRWAAGKEGNIRALLATMQYVLWPE-SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAE 895 (914)
Q Consensus 817 d~id~ki~~W~~GKe~NiRaLLstL~~VLW~~-~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe 895 (914)
|.|+.+|..|+.||++|||+||+|||.|||++ +.|+.|||...++..+||++|||+++++||||++.. . ..++|+
T Consensus 1 ~~i~~~i~~W~~gk~~~ir~lL~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~--~--~~~~A~ 76 (92)
T 2qwo_B 1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ--P--YEQYAK 76 (92)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTS--T--THHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--H--HHHHHH
T ss_conf 948899999882675679999998899844545678123888779999999999999998796879895--3--576899
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999994102
Q 002508 896 KVFDLLKEAWNKFNSE 911 (914)
Q Consensus 896 ~vF~~LneAwe~F~~~ 911 (914)
.+|..|++||++|+++
T Consensus 77 ~~F~~i~eAyevL~~~ 92 (92)
T 2qwo_B 77 MIFMELNDAWSEFENQ 92 (92)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999998709
No 2
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=164.93 Aligned_cols=100 Identities=54% Similarity=1.030 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 76675799999873267751889986101004899996336654322357889998854431379853567978688999
Q 002508 814 RIAETLDVEIKRWAAGKEGNIRALLATMQYVLWPESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI 893 (914)
Q Consensus 814 ~l~d~id~ki~~W~~GKe~NiRaLLstL~~VLW~~~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~i 893 (914)
.+.+.|+.+|..|+.|+++|||+||++|+.+||++..|..|.+.+.++..+||++|||+++.+||||++..|++.++++.
T Consensus 6 ~~~~~~~~~i~~W~~~~~~~ir~lL~~l~~~l~~~~d~Y~vl~~~~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~ 85 (106)
T 3ag7_A 6 EEIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYM 85 (106)
T ss_dssp HHHHHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTSCCCCCCGGGSCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 99999999999986132878999999999986166878998399879999999999999998882757775644566778
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999410279
Q 002508 894 AEKVFDLLKEAWNKFNSEEL 913 (914)
Q Consensus 894 Ae~vF~~LneAwe~F~~~e~ 913 (914)
|+..|..|++||++|++.++
T Consensus 86 A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 86 AEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999838566
No 3
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=1.00 E-value=1 Score=164.89 Aligned_cols=94 Identities=44% Similarity=0.805 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 667579999987326775188998610100489-9996336654322357889998854431379853567978688999
Q 002508 815 IAETLDVEIKRWAAGKEGNIRALLATMQYVLWP-ESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI 893 (914)
Q Consensus 815 l~d~id~ki~~W~~GKe~NiRaLLstL~~VLW~-~~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~i 893 (914)
..|.|+.+|..|..|+++|||+||++|+.|||+ ...|+.|+|...++..+||++||++++++||||++.. +.+ ++
T Consensus 83 ~~D~l~~~i~~W~~gk~~niRaLLssl~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~--~~e--~~ 158 (182)
T 1n4c_A 83 EMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ--PYE--QY 158 (182)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHGGGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSC--TTH--HH
T ss_pred HCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CHH--HH
T ss_conf 41689999998870668889999998778725766563437887798999999999999999796868885--067--89
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999941027
Q 002508 894 AEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 894 Ae~vF~~LneAwe~F~~~e 912 (914)
|+.+|..|++||++|.+..
T Consensus 159 A~~~F~~I~eAYevLsD~~ 177 (182)
T 1n4c_A 159 AKMIFMELNDAWSEFENQG 177 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999999977987
No 4
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=72.68 Aligned_cols=87 Identities=17% Similarity=0.308 Sum_probs=62.9
Q ss_pred HHHHHCCCC---CHHHHHHHHHCCCCCC-CC---CCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 998732677---5188998610100489-99---9633665432--2357889998854431379853567978688999
Q 002508 823 IKRWAAGKE---GNIRALLATMQYVLWP-ES---GWQPVSLTDL--ITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYI 893 (914)
Q Consensus 823 i~~W~~GKe---~NiRaLLstL~~VLW~-~~---~Wk~v~l~~L--~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~i 893 (914)
..-|..|.. -+...++|..-.++.+ .. -|.-+||..- ++..+||++||++.+.+||||++.. +...+..
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~--~~~e~~~ 88 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR--SQTEKDF 88 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTS--CHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHH
T ss_conf 99999999766565335416321345799999998998599998898999999999999998785989998--7899999
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999994102
Q 002508 894 AEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 894 Ae~vF~~LneAwe~F~~~ 911 (914)
|...|..||+||++|++.
T Consensus 89 a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 89 SEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp HHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHCCH
T ss_conf 999999999999998887
No 5
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=72.43 Aligned_cols=57 Identities=25% Similarity=0.447 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99963366543223578899988544313798535679786889999999999999999941027
Q 002508 848 ESGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 848 ~~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
..-|..|+|..-++..+||++||++++.+||||++..+ +...|..|++||++|.+..
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~--------~~~~f~~i~~Ay~~L~d~~ 83 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPG--------SEDAFKAVVNARTALLKNI 83 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTT--------HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC--------HHHHHHHHHHHHHHHCCCC
T ss_conf 99999909699989999999999999998849899965--------8999999999999978710
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=72.05 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9963366543223578899988544313798535679786889999999999999999941027
Q 002508 849 SGWQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 849 ~~Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
.-|..|+|..-++..+||++|+++++.+||||++. ..+.+.+..+...|..|++||++|.+..
T Consensus 17 ~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~-~~~~~~~~~~~~~f~~i~~Ay~~L~d~~ 79 (94)
T 1wjz_A 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSA-DVPAGTMEECMQKFIEIDQAWKILGNEE 79 (94)
T ss_dssp CHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCT-TCCHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 85787099999799999999999999888098977-7871436999999999999999988999
No 7
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=69.46 Aligned_cols=55 Identities=27% Similarity=0.324 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6336654322357889998854431379853567978688999999999999999994102
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|+-|++..-++..+||++||++++.+||||++.. ...|+..|..|++||++|.+.
T Consensus 19 y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~------~~~a~~~F~~I~~AYevL~~~ 73 (88)
T 1iur_A 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN------HDIANEVFKHLQNEINRLEKQ 73 (88)
T ss_dssp HHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9994989998999999999999999887989874------489999999999999999725
No 8
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=1.00 E-value=1 Score=68.53 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6336654322--357889998854431379853567978688999999999999999994102
Q 002508 851 WQPVSLTDLI--TAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~~L~--~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|.-+|+..-. +..+||++||++++.+||||++.. +...+..|...|..||+||+++++.
T Consensus 4 y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~--~~~e~~~a~~~f~~In~AY~vL~dp 64 (171)
T 1fpo_A 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG--SQAEQLAAVQQSATINQAWQTLRHP 64 (171)
T ss_dssp HHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS--CHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 888897988899999999999999998696989998--7899999999999999999998694
No 9
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=68.07 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 63366543223578899988544313798535679786889999999999999999941027
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEE 912 (914)
Q Consensus 851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~e 912 (914)
|.-|||....+..+||++||++++.+||||+...+ +.+.+..|...|..||+||++|.+..
T Consensus 13 y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~-~~~~~~~a~~~f~~i~~Ay~~L~dp~ 73 (155)
T 2l6l_A 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDV-PAGTVEECVQKFIEIDQAWKILGNEE 73 (155)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCC-TTHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 57538999979999999999999987819898887-55678999999999999999847989
No 10
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=67.91 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6336654322357889998854431379853567978688999999999999999994102
Q 002508 851 WQPVSLTDLITAAAVKKCYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSE 911 (914)
Q Consensus 851 Wk~v~l~~L~~~~~VKkaYrKA~l~vHPDKl~~~g~~~eqk~iAe~vF~~LneAwe~F~~~ 911 (914)
|..|+|...++..+||++||++++.+||||+.... .+...|..|++||++|.+.
T Consensus 20 Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------~a~~~f~~i~~Ay~~L~d~ 73 (99)
T 2yua_A 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-------EAAERFTRISQAYVVLGSA 73 (99)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCS-------HHHHHHHHHHHHHHHTTSH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-------HHHHHHHHHHHHHHHHCCH
T ss_conf 88829999989999999999999998839899978-------9999999999999998798
Done!