Query 002509
Match_columns 914
No_of_seqs 611 out of 5340
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 16:12:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002509.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1229-1233//hhsearch_pdb/002509hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 399.5 11.7 261 583-863 23-304 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 396.5 18.5 258 589-866 44-320 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 394.1 14.6 258 588-865 15-289 (299)
4 4ase_A Vascular endothelial gr 1.0 1 1 386.8 12.3 267 582-867 60-349 (353)
5 3omv_A RAF proto-oncogene seri 1.0 1 1 384.1 18.1 255 589-864 39-299 (307)
6 4b9d_A Serine/threonine-protei 1.0 1 1 379.1 11.2 249 588-859 26-277 (350)
7 4fih_A Serine/threonine-protei 1.0 1 1 377.8 16.6 248 588-859 76-324 (346)
8 4fie_A Serine/threonine-protei 1.0 1 1 376.7 19.4 248 588-859 153-401 (423)
9 3hmm_A TGF-beta receptor type- 1.0 1 1 374.7 18.7 267 589-866 6-298 (303)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 373.1 18.8 251 589-866 61-317 (336)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=399.53 Aligned_cols=261 Identities=21% Similarity=0.363 Sum_probs=212.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEEEEC------CCCEEEEEEEECCC-CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC
Q ss_conf 99999987411152386799999978------99699999970478-435101458999996324686027986555259
Q 002509 583 IEDATKMLEKKIGSGGFGVVYYGKLK------DGKEIAVKVLTSNS-YQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEG 655 (914)
Q Consensus 583 l~~~~~~~~~~LG~G~~G~Vy~~~~~------~~~~vAvK~l~~~~-~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~ 655 (914)
+......|.++||+|+||.||+|++. +++.||||+++... ....++|.+|+.++.+++|||||+++|+|.+.+
T Consensus 23 i~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~ 102 (308)
T 4gt4_A 23 ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ 102 (308)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 87888858669135888489999985776588886999999880149689999999999998589989877364998899
Q ss_pred CEEEEEEECCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC
Q ss_conf 14899995458976777413567------------322235788899999999999998708999711457787765767
Q 002509 656 RSVLVYEFMHNGTLKEHLYGTLT------------HEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLD 723 (914)
Q Consensus 656 ~~~LV~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~ 723 (914)
..++|||||++|+|.++|+.... ....++|..++.|+.|+|+||+|||++ +|+||||||+|||++
T Consensus 103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~ 179 (308)
T 4gt4_A 103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVY 179 (308)
T ss_dssp SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEC
T ss_conf 88999981899949999986276543333221111246899999999999999999999868---997787362306887
Q ss_pred CCCCEEEEECCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHH
Q ss_conf 99949996205661234899-720001125776569532224877865753205899999881-9977663433663122
Q 002509 724 KHMRAKVSDFGLSKFAVDGA-SHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELIS-GQEAISNEKFGANCRN 801 (914)
Q Consensus 724 ~~~~~kI~DFGla~~~~~~~-~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~Ellt-G~~p~~~~~~~~~~~~ 801 (914)
+++.+||+|||+|+...... ........||+.|||||++.++.++.++|||||||++|||+| |+.||.+... ..
T Consensus 180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~----~~ 255 (308)
T 4gt4_A 180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QD 255 (308)
T ss_dssp GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH----HH
T ss_pred CCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH----HH
T ss_conf 99978988760202336777404734512577656989982799996300015799999999689999999899----99
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88998875303883311277667810789999999999882499999999799999997654
Q 002509 802 IVQWAKLHIESGDIQGIIDPSLLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDA 863 (914)
Q Consensus 802 l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~ 863 (914)
+.+.+. .+.... .+.+....+.+++.+||+.+|++||+|.||+++|+..
T Consensus 256 ~~~~i~----~~~~~~---------~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 256 VVEMIR----NRQVLP---------CPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHH----TTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHH----CCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 999998----199899---------9620369999999997587965792999999999853
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=396.45 Aligned_cols=258 Identities=26% Similarity=0.414 Sum_probs=213.2
Q ss_pred HHHCCCCCCCCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 87411152386799999978------996999999704784351014589999963246860279865552591489999
Q 002509 589 MLEKKIGSGGFGVVYYGKLK------DGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYE 662 (914)
Q Consensus 589 ~~~~~LG~G~~G~Vy~~~~~------~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e 662 (914)
.+.++||+|+||.||+|+++ +++.||||+++.......++|.+|+++|.+++|||||+++|+|.+....++|||
T Consensus 44 ~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~E 123 (329)
T 4aoj_A 44 VLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFE 123 (329)
T ss_dssp EEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred EEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 88779714778489989987866577896999999775797999999999999985899899969899998998999998
Q ss_pred ECCCCCHHHHHHCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 5458976777413567-----------32223578889999999999999870899971145778776576799949996
Q 002509 663 FMHNGTLKEHLYGTLT-----------HEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVS 731 (914)
Q Consensus 663 ~~~~gsL~~~l~~~~~-----------~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~ 731 (914)
||++|+|.++++.... ....++|.+++.|+.|+|.||+|||+. +|+||||||+|||++.++.+||+
T Consensus 124 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~Ki~ 200 (329)
T 4aoj_A 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKIG 200 (329)
T ss_dssp CCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEEC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCCCEEEC
T ss_conf 279993999998607541001221124578899999999999999999998408---84226666764898899968976
Q ss_pred ECCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2056612348997-20001125776569532224877865753205899999881-997766343366312288998875
Q 002509 732 DFGLSKFAVDGAS-HVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELIS-GQEAISNEKFGANCRNIVQWAKLH 809 (914)
Q Consensus 732 DFGla~~~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~Ellt-G~~p~~~~~~~~~~~~l~~~~~~~ 809 (914)
|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||...... .+...+.
T Consensus 201 DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~----~~~~~i~-- 274 (329)
T 4aoj_A 201 DFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT----EAIDCIT-- 274 (329)
T ss_dssp CCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH----HHHHHHH--
T ss_pred CCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH----HHHHHHH--
T ss_conf 6603336567875300476455656658265447999966300105789999982899999998999----9999998--
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 303883311277667810789999999999882499999999799999997654757
Q 002509 810 IESGDIQGIIDPSLLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAIVI 866 (914)
Q Consensus 810 ~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~~~ 866 (914)
.+... .. +.....++.+++.+|++.+|++||||.||+++|+.+.+.
T Consensus 275 --~g~~~-----~~----p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 --QGREL-----ER----PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp --HTCCC-----CC----CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred --CCCCC-----CC----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf --08989-----98----644639999999997475965792999999999987458
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=394.10 Aligned_cols=258 Identities=26% Similarity=0.463 Sum_probs=212.9
Q ss_pred HHHHCCCCCCCCEEEEEEEEC------CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEE
Q ss_conf 987411152386799999978------99699999970478435101458999996324686027986555259148999
Q 002509 588 KMLEKKIGSGGFGVVYYGKLK------DGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVY 661 (914)
Q Consensus 588 ~~~~~~LG~G~~G~Vy~~~~~------~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~ 661 (914)
+.+.+.||+|+||.||+|++. ++..||||+++.......++|.+|++++++++|||||+++|+|.+++..++||
T Consensus 15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~ 94 (299)
T 4asz_A 15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVF 94 (299)
T ss_dssp EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 29824982078829999998776667788799999967778589999999999998589988862879995699899999
Q ss_pred EECCCCCHHHHHHCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEE
Q ss_conf 9545897677741356---------7322235788899999999999998708999711457787765767999499962
Q 002509 662 EFMHNGTLKEHLYGTL---------THEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSD 732 (914)
Q Consensus 662 e~~~~gsL~~~l~~~~---------~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~D 732 (914)
|||++|+|.++|+... .....++|.+++.|+.|+|.||+|||++ +|+||||||+|||++.++.+||+|
T Consensus 95 Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~D 171 (299)
T 4asz_A 95 EYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGD 171 (299)
T ss_dssp ECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECC
T ss_pred ECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEECC
T ss_conf 85899968999986086421112357778899999999999999999999759---904676577638987998689887
Q ss_pred CCCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 0566123489972-0001125776569532224877865753205899999881-9977663433663122889988753
Q 002509 733 FGLSKFAVDGASH-VSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELIS-GQEAISNEKFGANCRNIVQWAKLHI 810 (914)
Q Consensus 733 FGla~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~Ellt-G~~p~~~~~~~~~~~~l~~~~~~~~ 810 (914)
||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||..... ..+...+.
T Consensus 172 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~~i~--- 244 (299)
T 4asz_A 172 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIECIT--- 244 (299)
T ss_dssp CSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHHH---
T ss_pred CCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH----HHHHHHHH---
T ss_conf 30010067887416647513470103889870799970366778899999998089999999899----99999998---
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0388331127766781078999999999988249999999979999999765475
Q 002509 811 ESGDIQGIIDPSLLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAIV 865 (914)
Q Consensus 811 ~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~~ 865 (914)
.+.... .+.....++.+++.+|++.+|++||||.||++.|+++.+
T Consensus 245 -~~~~~~---------~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 245 -QGRVLQ---------RPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp -HTCCCC---------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCCCCC---------CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf -089889---------974143999999999768796689299999999987776
No 4
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=386.80 Aligned_cols=267 Identities=26% Similarity=0.395 Sum_probs=212.9
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEEECC------CCEEEEEEEECCCC-CCCHHHHHHHHHHHHCCC-CCEEEEEEEEEE
Q ss_conf 8999999874111523867999999789------96999999704784-351014589999963246-860279865552
Q 002509 582 DIEDATKMLEKKIGSGGFGVVYYGKLKD------GKEIAVKVLTSNSY-QGKREFTNEVTLLSRIHH-RNLVQFLGYCQE 653 (914)
Q Consensus 582 el~~~~~~~~~~LG~G~~G~Vy~~~~~~------~~~vAvK~l~~~~~-~~~~~~~~E~~~l~~l~H-pnIv~l~g~~~~ 653 (914)
|+....+.+.+.||+|+||.||+|.+.. ++.||||+++.... ...+.|.+|+++|.+++| ||||+++|+|.+
T Consensus 60 Ei~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~ 139 (353)
T 4ase_A 60 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTK 139 (353)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred EECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEE
T ss_conf 70579959820982178959999998688854477599999976235868999999999999975799848778899994
Q ss_pred C-CCEEEEEEECCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 5-914899995458976777413567------------322235788899999999999998708999711457787765
Q 002509 654 E-GRSVLVYEFMHNGTLKEHLYGTLT------------HEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNI 720 (914)
Q Consensus 654 ~-~~~~LV~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NI 720 (914)
. ...++|||||++|+|.++|+.... ....+++..++.++.|+|+||+|||++ +|+||||||+||
T Consensus 140 ~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NI 216 (353)
T 4ase_A 140 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNI 216 (353)
T ss_dssp TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCCCCE
T ss_conf 69779999983898979999974356665433341011035689999999999999998767627---843574672113
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 7679994999620566123489972-0001125776569532224877865753205899999881-9977663433663
Q 002509 721 LLDKHMRAKVSDFGLSKFAVDGASH-VSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELIS-GQEAISNEKFGAN 798 (914)
Q Consensus 721 Ll~~~~~~kI~DFGla~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~Ellt-G~~p~~~~~~~~~ 798 (914)
|+++++.+||+|||+|+........ ......||+.|||||++.+..++.++|||||||++|||+| |+.||.+.....
T Consensus 217 Ll~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~- 295 (353)
T 4ase_A 217 LLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE- 295 (353)
T ss_dssp EECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-
T ss_pred EECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHHH-
T ss_conf 0579997897965432224568872032540146665698999469999755374068999999818999999989899-
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 122889988753038833112776678107899999999998824999999997999999976547574
Q 002509 799 CRNIVQWAKLHIESGDIQGIIDPSLLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAIVIE 867 (914)
Q Consensus 799 ~~~l~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~~~~ 867 (914)
.+...+ ..+... ...... ..++.+++.+||+.+|++||||.||+++|+.+++..
T Consensus 296 --~~~~~i----~~g~~~-----~~p~~~----~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 296 --EFCRRL----KEGTRM-----RAPDYT----TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp --HHHHHH----HHTCCC-----CCCTTC----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred --HHHHHH----HCCCCC-----CCCCCC----CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf --999999----738988-----888657----899999999976869667939999999999999875
No 5
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=384.06 Aligned_cols=255 Identities=31% Similarity=0.503 Sum_probs=202.9
Q ss_pred HHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCC--CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 8741115238679999997899699999970478--43510145899999632468602798655525914899995458
Q 002509 589 MLEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNS--YQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYEFMHN 666 (914)
Q Consensus 589 ~~~~~LG~G~~G~Vy~~~~~~~~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e~~~~ 666 (914)
.+.++||+|+||+||+|+++ ..||||+++... ....+.|.+|++++++++|||||+++|+|.+ +..++|||||++
T Consensus 39 ~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 39 MLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp CEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred EEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEECCCC
T ss_conf 98449820888689999989--968999997268999999999999999985899887469999978-958999974899
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCC-CC
Q ss_conf 97677741356732223578889999999999999870899971145778776576799949996205661234899-72
Q 002509 667 GTLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSDFGLSKFAVDGA-SH 745 (914)
Q Consensus 667 gsL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~DFGla~~~~~~~-~~ 745 (914)
|+|.++++.. ...++|..++.|+.|+|.||+|||++ +|+||||||+|||+++++.+||+|||+|+...... ..
T Consensus 116 GsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~ 189 (307)
T 3omv_A 116 SSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189 (307)
T ss_dssp CBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC--------
T ss_pred CCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCE
T ss_conf 8788987524---89999999999999999999999779---95278557899788899908994415754246677640
Q ss_pred EEECCCCCCCCCCCCCCCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0001125776569532224---8778657532058999998819977663433663122889988753038833112776
Q 002509 746 VSSIVRGTVGYLDPEYYIS---QQLTDKSDVYSFGVILLELISGQEAISNEKFGANCRNIVQWAKLHIESGDIQGIIDPS 822 (914)
Q Consensus 746 ~~~~~~gt~~Y~aPE~~~~---~~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 822 (914)
.....+||+.|||||++.+ +.++.++|||||||++|||+||+.||...... ..+...+..... .+.
T Consensus 190 ~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~---~~~~~~~~~~~~--------~p~ 258 (307)
T 3omv_A 190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR---DQIIFMVGRGYA--------SPD 258 (307)
T ss_dssp ----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH---HHHHHHHHTTCC--------CCC
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHHCCCC--------CCC
T ss_conf 315644687724987861468998786877572899999999788998999969---999999965888--------887
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 678107899999999998824999999997999999976547
Q 002509 823 LLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAI 864 (914)
Q Consensus 823 l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~ 864 (914)
+. ....+....+.+++.+|++.+|++||||.||++.|+.+.
T Consensus 259 ~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 259 LS-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp ST-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred CC-CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 20-035445699999999975779768909899999999974
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=379.09 Aligned_cols=249 Identities=24% Similarity=0.396 Sum_probs=204.2
Q ss_pred HHHHCCCCCCCCEEEEEEEEC-CCCEEEEEEEECCC--CCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEC
Q ss_conf 987411152386799999978-99699999970478--435101458999996324686027986555259148999954
Q 002509 588 KMLEKKIGSGGFGVVYYGKLK-DGKEIAVKVLTSNS--YQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYEFM 664 (914)
Q Consensus 588 ~~~~~~LG~G~~G~Vy~~~~~-~~~~vAvK~l~~~~--~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e~~ 664 (914)
|.+.+.||+|+||.||+++.. +++.||||+++... ....+.+.+|+.++++++|||||++++++.+.+..++|||||
T Consensus 26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~ 105 (350)
T 4b9d_A 26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC 105 (350)
T ss_dssp EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 58847970277939999998899989999998658789799999999999998779989891999999899999999488
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCC
Q ss_conf 58976777413567322235788899999999999998708999711457787765767999499962056612348997
Q 002509 665 HNGTLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSDFGLSKFAVDGAS 744 (914)
Q Consensus 665 ~~gsL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~DFGla~~~~~~~~ 744 (914)
++|+|.+++... ....+++.....++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+..... .
T Consensus 106 ~gg~L~~~i~~~--~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~ 179 (350)
T 4b9d_A 106 EGGDLFKRINAQ--KGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-V 179 (350)
T ss_dssp TTCBHHHHHHHT--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-H
T ss_pred CCCCHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC-C
T ss_conf 998399999973--899997899999999999999999989---9151359789979878999897646521440688-5
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 20001125776569532224877865753205899999881997766343366312288998875303883311277667
Q 002509 745 HVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNEKFGANCRNIVQWAKLHIESGDIQGIIDPSLL 824 (914)
Q Consensus 745 ~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~ 824 (914)
......+||+.|||||++.+..++.++||||+||++|||++|+.||...... .+...+ ..+... .+.
T Consensus 180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~----~~~~~i----~~~~~~-----~~~ 246 (350)
T 4b9d_A 180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK----NLVLKI----ISGSFP-----PVS 246 (350)
T ss_dssp HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH----HHHHHH----HHTCCC-----CCC
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----HHHHHH----HCCCCC-----CCC
T ss_conf 4101457883603999987999895999999999999999787998996999----999999----808999-----997
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 81078999999999988249999999979999999
Q 002509 825 DEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKD 859 (914)
Q Consensus 825 ~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~ 859 (914)
...+ .++.+++.+|++.||++|||+.|++++
T Consensus 247 ~~~s----~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 247 LHYS----YDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp TTSC----HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred CCCC----HHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 5579----999999999855896679089999639
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=377.78 Aligned_cols=248 Identities=24% Similarity=0.329 Sum_probs=204.9
Q ss_pred HHHHCCCCCCCCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 987411152386799999978-9969999997047843510145899999632468602798655525914899995458
Q 002509 588 KMLEKKIGSGGFGVVYYGKLK-DGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYEFMHN 666 (914)
Q Consensus 588 ~~~~~~LG~G~~G~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e~~~~ 666 (914)
|.+.++||+|+||.||+|+.+ +|+.||||++........+.+.+|+++|++++|||||++++++.+.+..++|||||++
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred CEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38707960272829999999899989999998527656899999999999867998999199999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 97677741356732223578889999999999999870899971145778776576799949996205661234899720
Q 002509 667 GTLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSDFGLSKFAVDGASHV 746 (914)
Q Consensus 667 gsL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~DFGla~~~~~~~~~~ 746 (914)
|+|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+...... ..
T Consensus 156 g~L~~~l~-----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-~~ 226 (346)
T 4fih_A 156 GALTDIVT-----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PR 226 (346)
T ss_dssp EEHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS-CC
T ss_pred CCHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCC-CC
T ss_conf 80899987-----18989999999999999999999988---83556278899788799988990275753667887-75
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00112577656953222487786575320589999988199776634336631228899887530388331127766781
Q 002509 747 SSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNEKFGANCRNIVQWAKLHIESGDIQGIIDPSLLDE 826 (914)
Q Consensus 747 ~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 826 (914)
....+||+.|||||++.+..++.++||||+||++|||++|+.||.+.... .+...+.. +. .+.+..
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~----~~~~~i~~----~~-----~~~~~~- 292 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL----KAMKMIRD----NL-----PPRLKN- 292 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHHHHH----SS-----CCCCSC-
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----HHHHHHHC----CC-----CCCCCC-
T ss_conf 34656275827999977999996899999999999999787998985999----99999971----79-----998875-
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 078999999999988249999999979999999
Q 002509 827 YDIQSMWKIEEKALMCVLPHGHMRPSISEVLKD 859 (914)
Q Consensus 827 ~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~ 859 (914)
......++.+++.+|++.||++|||+.|++++
T Consensus 293 -~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 293 -LHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp -GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf -02299999999999867995689099999609
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=376.67 Aligned_cols=248 Identities=23% Similarity=0.326 Sum_probs=205.3
Q ss_pred HHHHCCCCCCCCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 987411152386799999978-9969999997047843510145899999632468602798655525914899995458
Q 002509 588 KMLEKKIGSGGFGVVYYGKLK-DGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYEFMHN 666 (914)
Q Consensus 588 ~~~~~~LG~G~~G~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e~~~~ 666 (914)
|.+.+.||+|+||.||+|+.+ +|+.||||++........+.+.+|+.+|++++|||||++++++...+..++|||||++
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCC
T ss_conf 38616962481848999999999989999998625546899999999999857998987168999989999999969899
Q ss_pred CCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCE
Q ss_conf 97677741356732223578889999999999999870899971145778776576799949996205661234899720
Q 002509 667 GTLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHMRAKVSDFGLSKFAVDGASHV 746 (914)
Q Consensus 667 gsL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~~~kI~DFGla~~~~~~~~~~ 746 (914)
|+|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+|+...... ..
T Consensus 233 G~L~~~i~-----~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~-~~ 303 (423)
T 4fie_A 233 GALTDIVT-----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-PR 303 (423)
T ss_dssp EEHHHHHH-----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-CC
T ss_pred CCHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-CC
T ss_conf 82898876-----16989999999999999999999988---90446578777898589998980372654777887-64
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 00112577656953222487786575320589999988199776634336631228899887530388331127766781
Q 002509 747 SSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNEKFGANCRNIVQWAKLHIESGDIQGIIDPSLLDE 826 (914)
Q Consensus 747 ~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~l~~~ 826 (914)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... .+...+.. +..... .....
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~----~~~~~i~~----~~~~~~---~~~~~ 372 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL----KAMKMIRD----NLPPRL---KNLHK 372 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HHHHHHHH----SCCCCC---SCTTS
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----HHHHHHHC----CCCCCC---CCCCC
T ss_conf 34666474727999977999996899999999999999787998986999----99999972----799887---65012
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 078999999999988249999999979999999
Q 002509 827 YDIQSMWKIEEKALMCVLPHGHMRPSISEVLKD 859 (914)
Q Consensus 827 ~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~ 859 (914)
.+ ..+.+++.+|++.||++|||+.|++++
T Consensus 373 ~s----~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 373 VS----PSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp SC----HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CC----HHHHHHHHHHCCCCHHHCCCHHHHHCC
T ss_conf 99----999999999867895689099999609
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=374.68 Aligned_cols=267 Identities=22% Similarity=0.340 Sum_probs=202.2
Q ss_pred HHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC----CEEEEEEEC
Q ss_conf 8741115238679999997899699999970478435101458999996324686027986555259----148999954
Q 002509 589 MLEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEG----RSVLVYEFM 664 (914)
Q Consensus 589 ~~~~~LG~G~~G~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~----~~~LV~e~~ 664 (914)
.+.+.||+|+||.||+|++. |+.||||+++.... ....++.|+..+.+++||||++++|+|.+.+ ..++|||||
T Consensus 6 ~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~ 83 (303)
T 3hmm_A 6 VLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYH 83 (303)
T ss_dssp EEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECC
T ss_pred EEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCCH-HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf 99789840899399999999-98999999883133-66999999999860899988709999984688723788775178
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCEEECCCCCEEEEECCCCCCC
Q ss_conf 589767774135673222357888999999999999987089-----997114577877657679994999620566123
Q 002509 665 HNGTLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGC-----VPAIIHRDLKSSNILLDKHMRAKVSDFGLSKFA 739 (914)
Q Consensus 665 ~~gsL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~-----~~~ivH~DIkp~NILl~~~~~~kI~DFGla~~~ 739 (914)
++|+|.++++ ...++|..+++++.|++.||+|||+++ .++|+||||||+|||++.++.+||+|||+|+..
T Consensus 84 ~~gsL~~~l~-----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 84 EHGSLFDYLN-----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp TTCBHHHHHH-----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred CCCCHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCCC
T ss_conf 9996899997-----57999899999999999999999985240047898762467842089988997899847987455
Q ss_pred CCCCCCE---EECCCCCCCCCCCCCCCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCC-CH------HHH
Q ss_conf 4899720---0011257765695322248------778657532058999998819977663433663-12------288
Q 002509 740 VDGASHV---SSIVRGTVGYLDPEYYISQ------QLTDKSDVYSFGVILLELISGQEAISNEKFGAN-CR------NIV 803 (914)
Q Consensus 740 ~~~~~~~---~~~~~gt~~Y~aPE~~~~~------~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~-~~------~l~ 803 (914)
....... .....||+.|||||++.+. .++.++|||||||++|||+||+.|+........ .. ...
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred CCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHH
T ss_conf 67777322104642466462698884565455677657067666479999999878998776652235310025454309
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 998875303883311277667810-789999999999882499999999799999997654757
Q 002509 804 QWAKLHIESGDIQGIIDPSLLDEY-DIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAIVI 866 (914)
Q Consensus 804 ~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~~~ 866 (914)
......... ...+|.+.... +.+....+.+++.+|++.+|++||||.||++.|+++.+.
T Consensus 239 ~~~~~~~~~----~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 239 EEMRKVVCE----QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHTT----SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHC----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 999998750----257998876556658999999999997605975795999999999988987
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=373.10 Aligned_cols=251 Identities=22% Similarity=0.267 Sum_probs=205.9
Q ss_pred HHHCCCCCCCCEEEEEEEEC-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf 87411152386799999978-99699999970478435101458999996324686027986555259148999954589
Q 002509 589 MLEKKIGSGGFGVVYYGKLK-DGKEIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEGRSVLVYEFMHNG 667 (914)
Q Consensus 589 ~~~~~LG~G~~G~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~e~~~~g 667 (914)
.+.++||+|+||.||+|+.+ +++.||||+++.. ....+|+.++.+++|||||++++++.+.+..++|||||++|
T Consensus 61 ~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~-----~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg 135 (336)
T 4g3f_A 61 THQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE-----VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG 135 (336)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-----TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred EECCEECCCCCEEEEEEEECCCCCEEEEEEECHH-----HHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCC
T ss_conf 7686851387809999998899989999997888-----86999999998579989993999999899999999665998
Q ss_pred CHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCC-CEEEEECCCCCCCCCCCC--
Q ss_conf 76777413567322235788899999999999998708999711457787765767999-499962056612348997--
Q 002509 668 TLKEHLYGTLTHEQRINWIKRLEIAEDAAKGIEYLHTGCVPAIIHRDLKSSNILLDKHM-RAKVSDFGLSKFAVDGAS-- 744 (914)
Q Consensus 668 sL~~~l~~~~~~~~~l~~~~~l~ia~~ia~gL~~LH~~~~~~ivH~DIkp~NILl~~~~-~~kI~DFGla~~~~~~~~-- 744 (914)
+|.+++.. ...+++.....++.|++.||+|||++ +|+||||||+|||++.++ ++||+|||+|+.......
T Consensus 136 ~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 136 SLGQLIKQ----MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp BHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCC
T ss_conf 69999987----69999999999999999999999988---904261677887995899979996278776856787654
Q ss_pred --CEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf --200011257765695322248778657532058999998819977663433663122889988753038833112776
Q 002509 745 --HVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNEKFGANCRNIVQWAKLHIESGDIQGIIDPS 822 (914)
Q Consensus 745 --~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVwSlGviL~ElltG~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~ 822 (914)
......+||+.|||||++.+..++.++||||+||++|||++|+.||...........+... .. ... .
T Consensus 209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~---~~---~~~-----~ 277 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASE---PP---PIR-----E 277 (336)
T ss_dssp -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHS---CC---GGG-----G
T ss_pred CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC---CC---CCH-----H
T ss_conf 022178545580200899988999890899999999999999786998998999999999808---99---800-----2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 67810789999999999882499999999799999997654757
Q 002509 823 LLDEYDIQSMWKIEEKALMCVLPHGHMRPSISEVLKDIQDAIVI 866 (914)
Q Consensus 823 l~~~~~~~~~~~l~~li~~Cl~~~P~~RPtm~eV~~~L~~~~~~ 866 (914)
+....+ ..+.+++.+|++.||++|||+.|++++|...+..
T Consensus 278 ~~~~~s----~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 278 IPPSCA----PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp SCTTSC----HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCC----HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 586679----9999999997628976895999999999999754
Done!