Query         002510
Match_columns 914
No_of_seqs    598 out of 4395
Neff          8.6 
Searched_HMMs 29240
Date          Tue Mar 26 16:36:45 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/002510.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1229-1233//hhsearch_pdb/002510hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2pnq_A [pyruvate dehydrogenase   1.0       1       1  383.9  18.9  290   59-388     7-456 (467)
  2 2j4o_A Mitogen-activated prote   1.0       1       1  364.3  19.2  263   94-389    26-368 (401)
  3 2i0o_A Ser/Thr phosphatase; be   1.0       1       1  364.1  24.4  259   86-387    14-304 (304)
  4 2p8e_A PPM1B beta isoform vari   1.0       1       1  362.9  24.6  254   90-390    19-301 (307)
  5 1a6q_A Phosphatase 2C; catalyt   1.0       1       1  362.5  23.4  252   92-390    19-295 (382)
  6 3d8k_A PP2C, protein phosphata   1.0       1       1  360.9  18.7  254   92-390    10-327 (377)
  7 3qn1_B Protein phosphatase 2C    1.0       1       1  357.0  23.7  250   96-390    15-331 (337)
  8 2i44_A Serine-threonine phosph   1.0       1       1  356.4  26.9  262   93-389    20-323 (324)
  9 2isn_A NYSGXRC-8828Z, phosphat   1.0       1       1  354.3  27.4  255   88-390     6-336 (364)
 10 4da1_A Protein phosphatase 1K,   1.0       1       1  353.6  25.4  251   96-391   123-380 (389)

No 1  
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Probab=1.00  E-value=1  Score=383.91  Aligned_cols=290  Identities=28%  Similarity=0.357  Sum_probs=226.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEC
Q ss_conf             23593322433345567555899996178308980289999823679989899888415998348888998289999719
Q 002510           59 SQLNPELGITRLSRVSSQFLPPEGSRTVKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSQDDHFFGVFDG  138 (914)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~~~~~~~~~V~DG  138 (914)
                      .||+|++...+|+..+.++.+.++.+.      ++.....+.|++|.    .|+.|||++.+....  ..++.|||||||
T Consensus         7 ~~l~~~~~~~~l~~~e~s~~~~~~~g~------~~~~v~~~~s~~g~----~R~~nED~~~v~~~~--~~~~~lfgVfDG   74 (467)
T 2pnq_A            7 FYLTPPQVNSILKANEYSFKVPEFDGK------NVSSILGFDSNRLP----ANAPIEDRRSATTCL--QTRGMLLGVFDG   74 (467)
T ss_dssp             --CCHHHHHHHHHHHCEEEECCCCTTT------CCCSEEEEEEEEEC----CSSSCCEEEEEEEES--SSSCEEEEEEEE
T ss_pred             CCCCHHHHHHHHHCCCEEEEECCCCCC------CCCCEEEEEEECCC----CCCCCCCCEEEEECC--CCCCEEEEEECC
T ss_conf             467999999997626806873378987------66646999940137----899888710665314--898279999789


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHC---------C---------------------CC------------------------
Q ss_conf             99131899999999999999811---------7---------------------98------------------------
Q 002510          139 HGEFGAQCSQFVKRKLCENLLRN---------N---------------------KF------------------------  164 (914)
Q Consensus       139 hGg~G~~as~~~~~~l~~~l~~~---------~---------------------~~------------------------  164 (914)
                      ||  |+.||++++++|...+...         .                     .+                        
T Consensus        75 HG--G~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~  152 (467)
T 2pnq_A           75 HA--GCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLN  152 (467)
T ss_dssp             ES--SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC-
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf             99--7799999999999999986301124444443220134433210123454321001110000000012222201245


Q ss_pred             ----C-HHHHHHHHHHHHHHHHHHHHCCC-------------CCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEEC-CC
Q ss_conf             ----1-25999999999999799874338-------------98898860899999698899998265407999743-98
Q 002510          165 ----H-EDAVDACHSSYLTTNSQLHADVL-------------DDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAERR-GK  225 (914)
Q Consensus       165 ----~-~~~~~~l~~a~~~~~~~i~~~~~-------------~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~-~~  225 (914)
                          . .++..+|+++|..+|.+|.....             +...|||||+++++.++++|||||||||||++|.+ ++
T Consensus       153 ~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~~~g  232 (467)
T 2pnq_A          153 TGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDG  232 (467)
T ss_dssp             -----CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESSCEEEEEEECTTS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCC
T ss_conf             44444020999999999999999997554202321111134567898413999999899799998778569999706899


Q ss_pred             EEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCCCCCCC
Q ss_conf             46988479989999977999999729879630211367798865678877899999911015996476-21000138665
Q 002510          226 EIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPG-TAFTRSIGDSI  304 (914)
Q Consensus       226 ~~~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g-~~~tRslGd~~  304 (914)
                      .|.+.+||.||+|.++.|++||.++|+....                   .       .++.++++.| +++||||||..
T Consensus       233 ~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~-------------------~-------~~~~~~Rv~G~l~vtRAlGd~~  286 (467)
T 2pnq_A          233 SWSAVTLSNDHNAQNERELQRLKLEHPKNEA-------------------K-------SVVKQDRLLGLLMPFRAFGDVK  286 (467)
T ss_dssp             CEEEEECCCCCSTTCHHHHHHHHHTSCGGGH-------------------H-------HHBSSSSBTTTBSSSBCEECGG
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHCCCCCCC-------------------C-------EEEECCCCCCCCCCCHHCCCHH
T ss_conf             5789988878999999999999980998656-------------------6-------0675683156402000117614


Q ss_pred             CC--------------------------------CCCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf             57--------------------------------8981134329999908999889997387311358679999998059
Q 002510          305 AE--------------------------------TIGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAKYK  352 (914)
Q Consensus       305 ~~--------------------------------~~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~~~  352 (914)
                      +|                                +++++++||+..++++++|.|||||||||||+|+++++++++....
T Consensus       287 ~K~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~eiv~iv~~~~  366 (467)
T 2pnq_A          287 FKWSIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYL  366 (467)
T ss_dssp             GTSCHHHHHHHHSSSCC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             20440233332002346443321001366434678755456608999858998499998567223578499999999998


Q ss_pred             ------CH------------------------------HHHHHHHHHHHHHHH----HCC--------------CCCCCC
Q ss_conf             ------98------------------------------999999999999998----602--------------998888
Q 002510          353 ------DP------------------------------RDACAAIVAESYRLW----LQY--------------ETRTDD  378 (914)
Q Consensus       353 ------~~------------------------------~~~a~~Lv~~a~~~~----~~~--------------~g~~Dn  378 (914)
                            +|                              +.+|..|++.|+..|    +.+              +..+||
T Consensus       367 ~~~~~~~p~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R~~~Dd  446 (467)
T 2pnq_A          367 TGMHHQQPIAVGGYKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDD  446 (467)
T ss_dssp             TTCSSCC-------------------------------CCHHHHHHHHHHC-------------------------CCSC
T ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             61455685435556753777778888765303577300689999999971478767510777776623796302458798


Q ss_pred             EEEEEEEECC
Q ss_conf             5898464078
Q 002510          379 ITVIVVHING  388 (914)
Q Consensus       379 iTvIvv~~~~  388 (914)
                      ||||||+++.
T Consensus       447 ITViVv~~~~  456 (467)
T 2pnq_A          447 ITIIVVQFNS  456 (467)
T ss_dssp             EEEEEEEECH
T ss_pred             CEEEEEEECC
T ss_conf             0899999375


No 2  
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A
Probab=1.00  E-value=1  Score=364.34  Aligned_cols=263  Identities=24%  Similarity=0.356  Sum_probs=213.5

Q ss_pred             EEEEEEEECCCCCCCCCC---CCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC----CCCH
Q ss_conf             289999823679989899---888415998348888998289999719991318999999999999998117----9812
Q 002510           94 ELRYSFLSQRGYYPDALD---KANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNN----KFHE  166 (914)
Q Consensus        94 ~~~~~~~s~~G~~~~~~r---~~neD~~~v~~~~~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~----~~~~  166 (914)
                      .+.+++++.+|+++...+   ..|||++++..   ...+..||+||||||  |+.+|++++++++..+....    ....
T Consensus        26 ~~~~G~~~~~G~r~~g~~~~r~~nED~~~~~~---~~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~~~~~~~~~  100 (401)
T 2j4o_A           26 LSGVGSASNRSYSADGKGTESHPPEDSWLKFR---SENNCFLYGVFNGYD--GNRVTNFVAQRLSAELLLGQLNAEHAEA  100 (401)
T ss_dssp             TEEEEEECCEEECSSSSCEECCCCCEEEEEEE---ETTTEEEEEEEEEES--SSHHHHHHHHHHHHTTSSSSCCTTSCHH
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEC---CCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             57545784353254566667788886579960---899849999974999--7799999999999999985641034416


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCC-------------------------------------CCCCCCCEEEEEEEECCEEEE
Q ss_conf             5999999999999799874338-------------------------------------988988608999996988999
Q 002510          167 DAVDACHSSYLTTNSQLHADVL-------------------------------------DDSMSGTTAVTVLVRGRTIYV  209 (914)
Q Consensus       167 ~~~~~l~~a~~~~~~~i~~~~~-------------------------------------~~~~~GtT~~~~~i~~~~l~v  209 (914)
                      ++..+|+++|..+|..+.....                                     ....||||+++++|.++++||
T Consensus       101 ~~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~~l~v  180 (401)
T 2j4o_A          101 DVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYV  180 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCSSCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEE
T ss_conf             49999999999999999998889875320001235555422101111100222220134667886577999998998899


Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf             98265407999743984698847998999997799999972987963021136779886567887789999991101599
Q 002510          210 ANSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNG  289 (914)
Q Consensus       210 anvGDSR~~l~r~~~~~~~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~  289 (914)
                      |||||||+|++|++...+.+++||.||+|.++.|+.||.++||.+....                            ..+
T Consensus       181 anvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~----------------------------~~r  232 (401)
T 2j4o_A          181 ANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIK----------------------------QVG  232 (401)
T ss_dssp             EEESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHHHHTTTCCHHHHH----------------------------HHC
T ss_pred             EECCCCEEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEECC----------------------------CCC
T ss_conf             9726846999981799866887999999998789999997099755334----------------------------750


Q ss_pred             CCCCCCCCCCCCCCCCC-------------CCCEECCCEEEE-EEECCCCCEEEEECCCCCCCC--------CHHHHHHH
Q ss_conf             64762100013866557-------------898113432999-990899988999738731135--------86799999
Q 002510          290 MYPGTAFTRSIGDSIAE-------------TIGVVANPEIVV-WELTNDHPFFVLASDGVFEFL--------SSQAVVDM  347 (914)
Q Consensus       290 ~~~g~~~tRslGd~~~~-------------~~~v~~~Pdv~~-~~l~~~d~flil~SDGl~d~l--------s~~ei~~~  347 (914)
                      ..+++++||||||..+|             .++++++||+.. ++++++|.|||||||||||+|        ++++++++
T Consensus       233 ~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~~~~~~~~s~~ei~~~  312 (401)
T 2j4o_A          233 IICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQANQEIAAM  312 (401)
T ss_dssp             CBTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCEEEEECCCHHHCCCCCCCCCCCHHHHHHH
T ss_conf             14873465110888662465433233456789765466587748847999699997541433401324578899999999


Q ss_pred             HHC----CCCHHHHHHHHHHHHHHHHHC--CCCC--------CCCEEEEEEEECCC
Q ss_conf             980----599899999999999999860--2998--------88858984640787
Q 002510          348 VAK----YKDPRDACAAIVAESYRLWLQ--YETR--------TDDITVIVVHINGL  389 (914)
Q Consensus       348 v~~----~~~~~~~a~~Lv~~a~~~~~~--~~g~--------~DniTvIvv~~~~~  389 (914)
                      +..    ..+++.+|+.|++.|+++|..  ..|+        .||||||||++...
T Consensus       313 v~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G~~~~~~~~~~DNiTvivv~~~~~  368 (401)
T 2j4o_A          313 IDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGYP  368 (401)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSCSSGGGGCSEECCEEEEEEEEBCC
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf             99998627999999999999999850233304774335678999859999983798


No 3  
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}
Probab=1.00  E-value=1  Score=364.12  Aligned_cols=259  Identities=27%  Similarity=0.414  Sum_probs=213.1

Q ss_pred             EEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             7830898028999982367998989988841599834888899828999971999131899999999999999811798-
Q 002510           86 VKVPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKF-  164 (914)
Q Consensus        86 ~~~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~-  164 (914)
                      ......+..+.+++.+++|     .|..|||++.+...+  +++..||+||||||  |+.+|+++++.+.+.+.+...+ 
T Consensus        14 ~~~~~~~~~~~~~~~s~~G-----~R~~nED~~~~~~~~--~~~~~l~~V~DGhG--G~~~a~~as~~~~~~l~~~~~~~   84 (304)
T 2i0o_A           14 DSSDESNEFLASGSSSMQG-----WRISQEDAHNCILNF--DDQCSFFAVYDGHG--GAEVAQYCSLHLPTFLKTVEAYG   84 (304)
T ss_dssp             EEEEEECSSEEEEEEEEEE-----SSSCCCEEEEEEEEE--ETTEEEEEEEECSS--CSHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CCCCCCCCCEEEEEEECCC-----CCCCCCCEEEEEECC--CCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             4455677855899863488-----998746789998246--99848999984999--88999999999999998535125


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEE
Q ss_conf             12599999999999979987433-----------------8988988608999996988999982654079997439846
Q 002510          165 HEDAVDACHSSYLTTNSQLHADV-----------------LDDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAERRGKEI  227 (914)
Q Consensus       165 ~~~~~~~l~~a~~~~~~~i~~~~-----------------~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~  227 (914)
                      ..++..+|+++|..+|+.+....                 .....||||++++++.++++++|||||||+|++|++.   
T Consensus        85 ~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~---  161 (304)
T 2i0o_A           85 RKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGK---  161 (304)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEEEESSCEEEEEETTE---
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEECCE---
T ss_conf             31499999999999989997414577776530233442346777898417999998997999980485799998999---


Q ss_pred             EEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98847998999997799999972987963021136779886567887789999991101599647621000138665578
Q 002510          228 VAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAET  307 (914)
Q Consensus       228 ~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd~~~~~  307 (914)
                       +++||.||+|.++.|+.||...||.+...                        .|      ..+.+++||+|||..+|.
T Consensus       162 -~~~LT~DH~~~~~~e~~rI~~~gg~v~~~------------------------~r------v~g~l~ltRalGd~~~k~  210 (304)
T 2i0o_A          162 -ALEMSFDHKPEDTVEYQRIEKAGGRVTLD------------------------GR------VNGGLNLSRAIGDHGYKM  210 (304)
T ss_dssp             -EEECCCCCCTTSHHHHHHHHHTTCCBCTT------------------------SC------BTTSCSCSBCEECGGGCC
T ss_pred             -EEECCCCCCCCCHHHHHHHHHCCCEEEEC------------------------CE------ECCCEECCCCCCCHHHCC
T ss_conf             -88938776993877999999679989869------------------------94------767565331445997725


Q ss_pred             --------CCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHCC-C
Q ss_conf             --------9811343299999089998899973873113586799999980-----5998999999999999998602-9
Q 002510          308 --------IGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK-----YKDPRDACAAIVAESYRLWLQY-E  373 (914)
Q Consensus       308 --------~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~-----~~~~~~~a~~Lv~~a~~~~~~~-~  373 (914)
                              ++|+++||+..++++++|.|||||||||||+++++++++++..     ..+++.+|+.|++.|+.+|... +
T Consensus       211 ~~~l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~~~~g~~  290 (304)
T 2i0o_A          211 NKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDG  290 (304)
T ss_dssp             CTTSCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC--------
T ss_pred             CCCCCCCCCEEEEECEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             86677667817731769999818998199997767323689899999999998615899999999999999875402689


Q ss_pred             CCCCCEEEEEEEEC
Q ss_conf             98888589846407
Q 002510          374 TRTDDITVIVVHIN  387 (914)
Q Consensus       374 g~~DniTvIvv~~~  387 (914)
                      ++.||||||||+++
T Consensus       291 g~~DNiTvivv~~~  304 (304)
T 2i0o_A          291 TGCDNMTAIIVQFK  304 (304)
T ss_dssp             ----CEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEC
T ss_conf             98898089999969


No 4  
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}
Probab=1.00  E-value=1  Score=362.94  Aligned_cols=254  Identities=26%  Similarity=0.426  Sum_probs=213.3

Q ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC----
Q ss_conf             8980289999823679989899888415998348888-99828999971999131899999999999999811798----
Q 002510           90 SAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKF----  164 (914)
Q Consensus        90 ~~~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~-~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~----  164 (914)
                      ..+..+.+++++++|     .|..|||++++...+.. .+++.||+||||||  |+.+|+++++.+.+.+.+...+    
T Consensus        19 ~~~~~~~~~~~s~~G-----~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~a~~as~~~~~~l~~~~~~~~~~   91 (307)
T 2p8e_A           19 GAGNGLRYGLSSMQG-----WRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHA--GSRVANYCSTHLLEHITTNEDFRAAG   91 (307)
T ss_dssp             EEETTEEEEEEEEEE-----TSSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSTTTC---
T ss_pred             CCCCCEEEEEEECCC-----CCCCCCCEEEEEECCCCCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             777870499985278-----99765545789724788988769999978989--99999999999999998657664045


Q ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEEEEEEC
Q ss_conf             ---------125999999999999799874338---98898860899999698899998265407999743984698847
Q 002510          165 ---------HEDAVDACHSSYLTTNSQLHADVL---DDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAERRGKEIVAVDL  232 (914)
Q Consensus       165 ---------~~~~~~~l~~a~~~~~~~i~~~~~---~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~l  232 (914)
                               ..++..+|+++|..+|..+.....   ....||||++++++.++++|+|||||||+|++|++.    +.+|
T Consensus        92 ~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~----~~~l  167 (307)
T 2p8e_A           92 KSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQ----VCFS  167 (307)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEECEEEEEECSSEEEEEEESSCEEEEEETTE----EEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECCC----CCCC
T ss_conf             444444346799999999999999999985154125778988718999997891899973685799998996----5607


Q ss_pred             CCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf             998999997799999972987963021136779886567887789999991101599647621000138665578-----
Q 002510          233 SIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAET-----  307 (914)
Q Consensus       233 t~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd~~~~~-----  307 (914)
                      |.||++.++.|+.||..+||.+..                         .|   .+|   .+++||+|||..+|.     
T Consensus       168 T~DH~~~~~~E~~rI~~~gg~v~~-------------------------~r---v~g---~l~ltRalGd~~~k~~~~~~  216 (307)
T 2p8e_A          168 TQDHKPCNPREKERIQNAGGSVMI-------------------------QR---VNG---SLAVSRALGDYDYKCVDGKG  216 (307)
T ss_dssp             CCCCCTTSHHHHHHHHHTTCCEET-------------------------TE---ETT---TBSCSBCEECGGGSCCTTCC
T ss_pred             CCCCCCCCHHHHHHHHHCCCEEEE-------------------------CC---CCC---EEECCCCCCCHHHHCCCCCC
T ss_conf             888899797899999986998981-------------------------75---367---57033244588772276667


Q ss_pred             ---CCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             ---9811343299999089998899973873113586799999980----599899999999999999860299888858
Q 002510          308 ---IGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAESYRLWLQYETRTDDIT  380 (914)
Q Consensus       308 ---~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~----~~~~~~~a~~Lv~~a~~~~~~~~g~~DniT  380 (914)
                         ++++++||+..+++.++|.|||||||||||+++++++++++..    ..+++.+|+.|++.|+.+     |+.||||
T Consensus       217 ~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~-----g~~DNiT  291 (307)
T 2p8e_A          217 PTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHK-----GSRDNMS  291 (307)
T ss_dssp             GGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-----TCCSCEE
T ss_pred             CCCCEEECCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCCCCEE
T ss_conf             77781752476999981799809999788733178879999999998743799999999999999876-----9978809


Q ss_pred             EEEEEECCCC
Q ss_conf             9846407876
Q 002510          381 VIVVHINGLK  390 (914)
Q Consensus       381 vIvv~~~~~~  390 (914)
                      ||||++...+
T Consensus       292 vivv~~~~~~  301 (307)
T 2p8e_A          292 IVLVCFSNEG  301 (307)
T ss_dssp             EEEEEC----
T ss_pred             EEEEECCCCC
T ss_conf             9999878877


No 5  
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Probab=1.00  E-value=1  Score=362.53  Aligned_cols=252  Identities=26%  Similarity=0.428  Sum_probs=210.9

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC--------
Q ss_conf             80289999823679989899888415998348888-998289999719991318999999999999998117--------
Q 002510           92 KYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGT-SQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNN--------  162 (914)
Q Consensus        92 ~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~-~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~--------  162 (914)
                      +..+.|++++++|     .|..|||++++...+.. .+++.||+||||||  |+.+|+++++.+.+.+.+..        
T Consensus        19 ~~~l~~g~~s~~G-----~R~~nEDa~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~~~~~~~~~   91 (382)
T 1a6q_A           19 GNGLRYGLSSMQG-----WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEHLLDHITNNQDFKGSAGA   91 (382)
T ss_dssp             ETTEEEEEEEEEE-----TSSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSHHHHCSSSS
T ss_pred             CCCEEEEEEECCC-----CCCCCCCEEEEECCCCCCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8853899994478-----98777861699547888888769999985888--6899999999999999850665405777


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf             9812599999999999979987433---8988988608999996988999982654079997439846988479989999
Q 002510          163 KFHEDAVDACHSSYLTTNSQLHADV---LDDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAERRGKEIVAVDLSIDQTPF  239 (914)
Q Consensus       163 ~~~~~~~~~l~~a~~~~~~~i~~~~---~~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~~~lt~dh~~~  239 (914)
                      .....+..+|+++|..+|..+....   .....||||++++++.++++|+|||||||+|++|++.    +.+||.||+|.
T Consensus        92 ~~~~~~~~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~li~~~~l~vanvGDSRayl~r~g~----~~~LT~DHs~~  167 (382)
T 1a6q_A           92 PSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRK----VHFFTQDHKPS  167 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTE----EEEECCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEECCC----EEEECCCCCCC
T ss_conf             77789999999999999999986454035778886429999998994899984787599997991----57817899899


Q ss_pred             CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC--------CCEE
Q ss_conf             97799999972987963021136779886567887789999991101599647621000138665578--------9811
Q 002510          240 REDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAET--------IGVV  311 (914)
Q Consensus       240 ~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd~~~~~--------~~v~  311 (914)
                      ++.|+.||..+||.+..                         .|   .+|   .+++||+|||..+|.        ++|+
T Consensus       168 ~~~E~~RI~~~gg~v~~-------------------------~R---v~g---~l~ltRalGd~~~K~~~~~~~~~~~v~  216 (382)
T 1a6q_A          168 NPLEKERIQNAGGSVMI-------------------------QR---VNG---SLAVSRALGDFDYKCVHGKGPTEQLVS  216 (382)
T ss_dssp             SHHHHHHHHHTTCCEET-------------------------TE---ETT---TBSCSBCEECGGGSCCTTCCGGGSSSB
T ss_pred             CHHHHHHHHHCCCEEEC-------------------------CC---CCC---CEEEEEECCCHHHCCCCCCCCCCCEEE
T ss_conf             98899999866967751-------------------------33---158---410101137675404666787667366


Q ss_pred             CCCEEEEEEEC-CCCCEEEEECCCCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf             34329999908-9998899973873113586799999980----599899999999999999860299888858984640
Q 002510          312 ANPEIVVWELT-NDHPFFVLASDGVFEFLSSQAVVDMVAK----YKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHI  386 (914)
Q Consensus       312 ~~Pdv~~~~l~-~~d~flil~SDGl~d~ls~~ei~~~v~~----~~~~~~~a~~Lv~~a~~~~~~~~g~~DniTvIvv~~  386 (914)
                      ++|++..+++. ++|.|||||||||||+++++++++++..    ..+++.+|+.|++.|+.+     |+.||||||||++
T Consensus       217 ~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~-----g~~DNiTvivv~~  291 (382)
T 1a6q_A          217 PEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYK-----GSRDNMSVILICF  291 (382)
T ss_dssp             CCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-----TCCSCEEEEEEEC
T ss_pred             EEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCCCCEEEEEEEE
T ss_conf             64369999803789839999666756788759999999998744798999999999999862-----9968879999991


Q ss_pred             CCCC
Q ss_conf             7876
Q 002510          387 NGLK  390 (914)
Q Consensus       387 ~~~~  390 (914)
                      ...+
T Consensus       292 ~~~~  295 (382)
T 1a6q_A          292 PNAP  295 (382)
T ss_dssp             TTSC
T ss_pred             CCCC
T ss_conf             5888


No 6  
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=360.90  Aligned_cols=254  Identities=22%  Similarity=0.272  Sum_probs=211.6

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             80289999823679989899888415998348888998289999719991318999999999999998117981259999
Q 002510           92 KYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKFHEDAVDA  171 (914)
Q Consensus        92 ~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~~~~~~~~  171 (914)
                      +..+.++++|++|+|+.+.+.+|||++++...+...++..||+||||||  |+.+|+++++++...+.+...   .+..+
T Consensus        10 ~~~~~~~~~s~~G~R~~~ED~~neD~~~~~~~~~~~~~~~lf~V~DGhG--G~~aa~~as~~l~~~l~~~~~---~~~~a   84 (377)
T 3d8k_A           10 EGRTVCASATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQ--GRHSAMWLAQNVMNYLNDLRD---VNEEE   84 (377)
T ss_dssp             HHHHHHHHTTTCEEEEEECC---CEEEEEEEECSSCTTEEEEEEEEBSS--SSHHHHHHHHHHHHHHTTCSS---SSHHH
T ss_pred             CCCEEEEEEECCCCCCCCCCCHHCCEEEEECCCCCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHCC---CHHHH
T ss_conf             8868999998467997445520131699713458999869999974998--489999999999999987135---68999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE------------------------------------------------
Q ss_conf             99999999799874338988988608999996------------------------------------------------
Q 002510          172 CHSSYLTTNSQLHADVLDDSMSGTTAVTVLVR------------------------------------------------  203 (914)
Q Consensus       172 l~~a~~~~~~~i~~~~~~~~~~GtT~~~~~i~------------------------------------------------  203 (914)
                      |+++|..+|..+.....   .+|||++++++.                                                
T Consensus        85 l~~af~~~d~~l~~~~~---~~GtTa~~~~i~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~  161 (377)
T 3d8k_A           85 ITRQFERMDGDLRAANL---PGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRA  161 (377)
T ss_dssp             HHHHHHHHHHHHHHHTC---CCCBCEEEEEEEEESSCCCEEEETTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGG
T ss_pred             HHHHHHHHHHHHHHCCC---CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             99999999999985056---788714899985045654222334334654432223322234665322000001345334


Q ss_pred             ---CCEEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---98899998265407999743984698847998999997799999972987963021136779886567887789999
Q 002510          204 ---GRTIYVANSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGD  280 (914)
Q Consensus       204 ---~~~l~vanvGDSR~~l~r~~~~~~~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~  280 (914)
                         ++++|+|||||||+|++|++    .+.+||.||+|.++.|+.||.++||.+....                      
T Consensus       162 ~~~~~~l~vanvGDSRa~l~r~g----~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~~----------------------  215 (377)
T 3d8k_A          162 AKGIYTIHVASLGNSRCVLKSGR----TAIHLSTPHTASSHKERHRVQAAGGVFTTVN----------------------  215 (377)
T ss_dssp             TTCEEEEEEEEESSCEEEEEETT----EEEESSCCCSSSSHHHHHHHHTTTCCEEECS----------------------
T ss_pred             CCCCCEEEEEECCCCEEEEEECC----EEEECCCCCCCCCHHHHHHHHHCCCEEEECC----------------------
T ss_conf             56777699998666628999899----9988875889898889999997598787049----------------------


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCCCC--------CCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC--
Q ss_conf             991101599647621000138665578--------9811343299999089998899973873113586799999980--
Q 002510          281 PPRLWVPNGMYPGTAFTRSIGDSIAET--------IGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK--  350 (914)
Q Consensus       281 p~r~~~~~~~~~g~~~tRslGd~~~~~--------~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~--  350 (914)
                        ..|+.+|   ++++||||||..+|.        ++++++||+..++++++| |||||||||||++++++++..+..  
T Consensus       216 --g~~rv~G---~l~vtRalGd~~~k~~~~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~ls~~e~v~~v~~~~  289 (377)
T 3d8k_A          216 --GELLLGG---VVPMTRAFGSFDFKKGGQGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAAIAAAIALY  289 (377)
T ss_dssp             --SSEEETT---TBSCSBCSSCGGGSCC---CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCSCSSHHHHHHHHTTS
T ss_pred             --CCEEECC---CEECCEEECCHHHHCCCCCCCCCCCCCCCCCEEEEECCCCC-EEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             --9478857---36113440576653455566556854337827899869999-99999788645778499999999873


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf             ---5998999999999999998602998888589846407876
Q 002510          351 ---YKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHINGLK  390 (914)
Q Consensus       351 ---~~~~~~~a~~Lv~~a~~~~~~~~g~~DniTvIvv~~~~~~  390 (914)
                         ..+++.+|+.|++.|+.+     |+.||||||||++....
T Consensus       290 ~~~~~~~~~~a~~Lv~~A~~~-----g~~DNiTvivv~~~~~~  327 (377)
T 3d8k_A          290 PVSPETVLDAAKAMVVNAKRR-----KVTKNISTFVRHLPESR  327 (377)
T ss_dssp             CCCGGGHHHHHHHHHHTTTTS-----SCCSCCCEEEEECCSSC
T ss_pred             HCCCCCHHHHHHHHHHHHHHC-----CCCCCEEEEEEEECCCC
T ss_conf             225889999999999999866-----99999899999951876


No 7  
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*
Probab=1.00  E-value=1  Score=357.00  Aligned_cols=250  Identities=28%  Similarity=0.487  Sum_probs=203.4

Q ss_pred             EEEEEECCCCCCCCCCCCCCCEEEEECCCCC------------------CCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999823679989899888415998348888------------------9982899997199913189999999999999
Q 002510           96 RYSFLSQRGYYPDALDKANQDSFCIHTPFGT------------------SQDDHFFGVFDGHGEFGAQCSQFVKRKLCEN  157 (914)
Q Consensus        96 ~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~------------------~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~  157 (914)
                      .|+..|.+|     .|..|||++++.+.+..                  ..++.||+||||||  |+.+++++++.+...
T Consensus        15 ~~G~~s~~G-----~R~~nEDa~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~l~~V~DGhG--G~~~~~~as~~~~~~   87 (337)
T 3qn1_B           15 LWGTVSIQG-----NRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHG--GHKVADYCRDRLHFA   87 (337)
T ss_dssp             CEEEEEECT-----TSSSCCEEEEEEEEEEEEEGGGTC----------CEEEEEEEEEEEEES--SSHHHHHHHHHHHHH
T ss_pred             CEEEEEEEE-----CCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHH
T ss_conf             668888000-----8712220789875442164100034445655444677727999970888--756999999999999


Q ss_pred             HHHC----CC----------CCHHHHHHHHHHHHHHHHHHHHCC--------------CCCCCCCCEEEEEEEECCEEEE
Q ss_conf             9811----79----------812599999999999979987433--------------8988988608999996988999
Q 002510          158 LLRN----NK----------FHEDAVDACHSSYLTTNSQLHADV--------------LDDSMSGTTAVTVLVRGRTIYV  209 (914)
Q Consensus       158 l~~~----~~----------~~~~~~~~l~~a~~~~~~~i~~~~--------------~~~~~~GtT~~~~~i~~~~l~v  209 (914)
                      +.+.    ..          ....+..+|+++|..+|.++....              .....||||++++++.++++|+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~~  167 (337)
T 3qn1_B           88 LAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVV  167 (337)
T ss_dssp             HHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSCBCCCSSCTTCEECEEEEEECSSEEEE
T ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
T ss_conf             99999763233301455411378999999999998609987532101345542112345567898649999998998999


Q ss_pred             EECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf             98265407999743984698847998999997799999972987963021136779886567887789999991101599
Q 002510          210 ANSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNG  289 (914)
Q Consensus       210 anvGDSR~~l~r~~~~~~~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~  289 (914)
                      |||||||+|++|++.    +.+||.||+|.++.|+.||...||.+...+.                            ..
T Consensus       168 anvGDSR~~l~r~g~----~~~lT~DH~~~~~~e~~ri~~~gg~v~~~~~----------------------------~r  215 (337)
T 3qn1_B          168 SNCGDSRAVLFRGKE----AMPLSVDHKPDREDEYARIENAGGKVIQWQG----------------------------AR  215 (337)
T ss_dssp             EEESSCEEEEEETTE----EEESCCCCCTTSHHHHHHHHHTTCCEEESSS----------------------------EE
T ss_pred             EECCCCEEEEEECCE----EEEECCCCCCCCHHHHHHHHHCCCEEEECCC----------------------------CE
T ss_conf             963684799994997----5154577888998999999976984896178----------------------------40


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHC-------------------
Q ss_conf             6476210001386655789811343299999089998899973873113586799999980-------------------
Q 002510          290 MYPGTAFTRSIGDSIAETIGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAK-------------------  350 (914)
Q Consensus       290 ~~~g~~~tRslGd~~~~~~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~-------------------  350 (914)
                      ..+.+++||+|||..+++. ++++|++..+++.+.++|||||||||||+++++++++++..                   
T Consensus       216 ~~g~l~~sRalGd~~~~~~-v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~  294 (337)
T 3qn1_B          216 VFGVLAMSRSIGDRYLKPY-VIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGK  294 (337)
T ss_dssp             ETTTBSCSBCEECGGGTTT-SBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHHHHHHHHCCC----CCS
T ss_pred             ECCCCCCCCCCCCCCCCCC-CCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             1586400312164012688-787666999970799979999844842488889999999998643111235553111134


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf             --5998999999999999998602998888589846407876
Q 002510          351 --YKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHINGLK  390 (914)
Q Consensus       351 --~~~~~~~a~~Lv~~a~~~~~~~~g~~DniTvIvv~~~~~~  390 (914)
                        ..+++.+|+.|++.|+.+     |+.||||||||++....
T Consensus       295 ~~~~~~~~~a~~Lv~~A~~~-----g~~DNiTvivv~l~~~~  331 (337)
T 3qn1_B          295 GIDPACQAAADYLSMLALQK-----GSKDNISIIVIDLKAQR  331 (337)
T ss_dssp             SCCHHHHHHHHHHHHHHHHT-----TCCSCEEEEEEECCSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHC-----CCCCCEEEEEEEECCCC
T ss_conf             46706999999999999973-----99988799999956876


No 8  
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=356.40  Aligned_cols=262  Identities=22%  Similarity=0.352  Sum_probs=206.1

Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCEEEEECCC-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC-------
Q ss_conf             02899998236799898998884159983488-8899828999971999131899999999999999811798-------
Q 002510           93 YELRYSFLSQRGYYPDALDKANQDSFCIHTPF-GTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKF-------  164 (914)
Q Consensus        93 ~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~-~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~-------  164 (914)
                      ..+.++++|++|     .|+.|||++++.... ....+..||+||||||  |+.+++++++.+...+.+...+       
T Consensus        20 ~~~~~~~~s~~G-----~R~~nED~~~~~~~~~~~~~~~~l~~V~DGhG--G~~~~~~as~~~~~~l~~~~~~~~~~~~l   92 (324)
T 2i44_A           20 PAFDAAIFTDIG-----GRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTV--GDFASENVKDLVVPQLISSPAWQEVTEML   92 (324)
T ss_dssp             TTEEEEEEEECT-----TSSSCCEEEEEESCCSTTCSSEEEEEEEEEES--SSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCEEEEEEECCC-----CCCCCCCEEEEEECCCCCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             535789887888-----99866775899846788888759999969998--36999999999999997426778888876


Q ss_pred             -------------CHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECCCEEEE
Q ss_conf             -------------125999999999999799874338--98898860899999698899998265407999743984698
Q 002510          165 -------------HEDAVDACHSSYLTTNSQLHADVL--DDSMSGTTAVTVLVRGRTIYVANSGDSRAVLAERRGKEIVA  229 (914)
Q Consensus       165 -------------~~~~~~~l~~a~~~~~~~i~~~~~--~~~~~GtT~~~~~i~~~~l~vanvGDSR~~l~r~~~~~~~~  229 (914)
                                   ..++..+|+++|..+|..+.....  ....+|+|++++++.++++|+|||||||+|++|+++..+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~g~gtt~~~i~~~~l~vanvGDSRa~l~r~~~~g~~~  172 (324)
T 2i44_A           93 RSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPNGLNC  172 (324)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCEECEEEEEEETTEEEEEEESSCEEEEEEEETTEEEE
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCCEE
T ss_conf             31477432222232259999999999999999987763277778877089999799599997368648999615999668


Q ss_pred             EECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----CC-
Q ss_conf             8479989999977999999729879630211367798865678877899999911015996476210001386----65-
Q 002510          230 VDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGD----SI-  304 (914)
Q Consensus       230 ~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd----~~-  304 (914)
                      .+||.||+|.++.|++||.++||.+...                    ..+|.+.+...|   .+++||++||    .. 
T Consensus       173 ~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~--------------------~~~~~~~~~~~g---~l~~sra~Gd~p~~~~~  229 (324)
T 2i44_A          173 EFLTVDHKPDMPHEKLRIMRNGGSVEYL--------------------HNHNNKPFIRGG---DFSFRKSRGEQPMQLQY  229 (324)
T ss_dssp             EESCCCCCTTSHHHHHHHHHTTCEEECC--------------------TTCTTSCEEECT---THHHHHHTTCCCCCBSS
T ss_pred             EECCCCCCCCCHHHHHHHHHCCCEEEEC--------------------CCCCCCCCCCCC---CCCCHHHCCCCCCCCEE
T ss_conf             8889999994877999999769879833--------------------456677751047---51321102875321000


Q ss_pred             --------CCCCCEECCCEEEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCC----CCHHH--HHHHHHHHHHHHHH
Q ss_conf             --------57898113432999990899988999738731135867999999805----99899--99999999999986
Q 002510          305 --------AETIGVVANPEIVVWELTNDHPFFVLASDGVFEFLSSQAVVDMVAKY----KDPRD--ACAAIVAESYRLWL  370 (914)
Q Consensus       305 --------~~~~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~ls~~ei~~~v~~~----~~~~~--~a~~Lv~~a~~~~~  370 (914)
                              .+.++++++||+..+++.++|.|||||||||||+|+++++++++...    .+++.  +|+.|++.|+.+  
T Consensus       230 ~~~~g~~~~~~~~v~~~pdv~~~~l~~~d~~llLaSDGl~d~ls~~ei~~~v~~~~~~~~~~~~~~~a~~L~~~A~~~--  307 (324)
T 2i44_A          230 SRAFGGKDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQSRN--  307 (324)
T ss_dssp             SBCEECGGGTTTTCBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT--
T ss_pred             CCCCCCCCCCCCEEEECCEEEEEECCCCCEEEEEECCCHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--
T ss_conf             224577566689376247899998589874999976701215798999999999875589877999999999999866--


Q ss_pred             CCCCCCCCEEEEEEEECCC
Q ss_conf             0299888858984640787
Q 002510          371 QYETRTDDITVIVVHINGL  389 (914)
Q Consensus       371 ~~~g~~DniTvIvv~~~~~  389 (914)
                         |+.||||||||++.+.
T Consensus       308 ---g~~DNiTvivv~~~~~  323 (324)
T 2i44_A          308 ---QSADNITAMTVFFKKT  323 (324)
T ss_dssp             ---CCCCCEEEEEEEEC--
T ss_pred             ---CCCCCCEEEEEEEECC
T ss_conf             ---9988977999995089


No 9  
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}
Probab=1.00  E-value=1  Score=354.28  Aligned_cols=255  Identities=24%  Similarity=0.377  Sum_probs=209.3

Q ss_pred             EECCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             30898028999982367998989988841599834888899828999971999131899999999999999811798125
Q 002510           88 VPSAKYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKFHED  167 (914)
Q Consensus        88 ~~~~~~~~~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~~~~  167 (914)
                      +..++.-+.++++|++|     .|..|||++++...+...++..||+||||||  |+.||+|++++|...+.+....   
T Consensus         6 ~~~~~~~~~~~~~s~~G-----~R~~nED~~~v~~~~~~~~~~~lf~VfDGHG--G~~as~~a~~~l~~~l~~~~~~---   75 (364)
T 2isn_A            6 ITVNEWYTTTVAATMLG-----RRPTDEDAILVSAPATSRPNVRIKAVFDGHA--GEATSQYCAKHAAKHLGKLSEF---   75 (364)
T ss_dssp             EEEEETTEEEEEEEECT-----TSSSCCEEEEEECC----CCEEEEEEEEEES--CSHHHHHHHHHHHHHHTTCSSC---
T ss_pred             EEECCCCEEEEEEECCC-----CCCCCCCEEEEECCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHHHHCC---
T ss_conf             99638816899987378-----9986777259841479999818999997989--8999999999999999875403---


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEC-------------------------------------------
Q ss_conf             9999999999997998743389889886089999969-------------------------------------------
Q 002510          168 AVDACHSSYLTTNSQLHADVLDDSMSGTTAVTVLVRG-------------------------------------------  204 (914)
Q Consensus       168 ~~~~l~~a~~~~~~~i~~~~~~~~~~GtT~~~~~i~~-------------------------------------------  204 (914)
                      ...+|+++|..+|..+.........+|||++++++.+                                           
T Consensus        76 ~~~~l~~a~~~~d~~i~~~~~~~~~~GtT~v~~~i~~~~~p~~~~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~  155 (364)
T 2isn_A           76 TFAEVKKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVG  155 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSSCCEECEEEEEEEECSSCEEEEEETTEECCC-----CCCHHHHHHHHHHC-----CC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             58899999999999998741467788763132113314553111123311233333210123444421001013420014


Q ss_pred             -----------------CEEEEEECCCCEEEEEE-ECCCEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf             -----------------88999982654079997-439846988479989999977999999729879630211367798
Q 002510          205 -----------------RTIYVANSGDSRAVLAE-RRGKEIVAVDLSIDQTPFREDELERVKLSGARVLTLDQIEGLKNP  266 (914)
Q Consensus       205 -----------------~~l~vanvGDSR~~l~r-~~~~~~~~~~lt~dh~~~~~~E~~Ri~~~gg~v~~~~~~~~~~~~  266 (914)
                                       .++|+|||||||+|+++ ++.    +.+||.||+|.++.|+.||.++||.|...         
T Consensus       156 ~~~~~~~~~~~~~~~g~~~l~vanvGDSRayl~~r~g~----~~~LT~DH~~~~~~e~~rI~~~gG~v~~~---------  222 (364)
T 2isn_A          156 RYPRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDGG----LTRLSKDHKPNHPTEASRIEKAGGSVETF---------  222 (364)
T ss_dssp             SSCCCCCCEEEEECTTCEEEEEEEESSCEEEEECTTSC----EEECCCCCCTTSHHHHHHHHHTTCCEEES---------
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCE----EEECCCCCCCCCHHHHHHHHHCCCEEECC---------
T ss_conf             43333323443212576679999872687999940998----89867678898788999999759868427---------


Q ss_pred             CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC--------CCEECCCEEEEEEECCCCCEEEEECCCCCCC
Q ss_conf             86567887789999991101599647621000138665578--------9811343299999089998899973873113
Q 002510          267 DVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAET--------IGVVANPEIVVWELTNDHPFFVLASDGVFEF  338 (914)
Q Consensus       267 ~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd~~~~~--------~~v~~~Pdv~~~~l~~~d~flil~SDGl~d~  338 (914)
                                  .+ +|   .++   .+++||||||..+|.        ++++++||+..+++.++| |||||||||||+
T Consensus       223 ------------~~-~r---v~g---~l~ltRalGd~~~k~~~~l~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~  282 (364)
T 2isn_A          223 ------------DV-PR---VDG---VLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALSSD-LLLLACDGVYEP  282 (364)
T ss_dssp             ------------SS-EE---ETT---TBSCSBCEECGGGSCCCSSCGGGSSSBCCCEEEEEEECTTC-EEEEECHHHHCS
T ss_pred             ------------CC-CC---CCC---CEEEEEEECCHHHCCCCCCCCCCCCEEEEEEEEEEECCCCC-EEEEECCCCCCC
T ss_conf             ------------87-63---478---53247872333321464567556845787579999879999-999986887777


Q ss_pred             CC--HHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf             58--67999999-----805998999999999999998602998888589846407876
Q 002510          339 LS--SQAVVDMV-----AKYKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHINGLK  390 (914)
Q Consensus       339 ls--~~ei~~~v-----~~~~~~~~~a~~Lv~~a~~~~~~~~g~~DniTvIvv~~~~~~  390 (914)
                      ++  ++++.+++     ....+++.+|+.|++.|+.+     |+.||||||||++....
T Consensus       283 l~~~~~~v~~~~~~~~~~~~~~~~~~a~~Lv~~A~~~-----g~~DNiTvivv~~~~~~  336 (364)
T 2isn_A          283 SGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDM-----NSQDNISVMLVAFHNQE  336 (364)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHT-----TCCSCEEEEEEEECSSC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----CCCCCEEEEEEECCCCC
T ss_conf             7777899999999997645799999999999999866-----99999899999907988


No 10 
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=1.00  E-value=1  Score=353.57  Aligned_cols=251  Identities=31%  Similarity=0.468  Sum_probs=211.5

Q ss_pred             EEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99998236799898998884159983488889982899997199913189999999999999981179812599999999
Q 002510           96 RYSFLSQRGYYPDALDKANQDSFCIHTPFGTSQDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNNKFHEDAVDACHSS  175 (914)
Q Consensus        96 ~~~~~s~~G~~~~~~r~~neD~~~v~~~~~~~~~~~~~~V~DGhGg~G~~as~~~~~~l~~~l~~~~~~~~~~~~~l~~a  175 (914)
                      .++++|++|     .|..|||++++..   ..++..+|+||||||  |+.+++++++.+...+.+......++..+|+.+
T Consensus       123 ~~g~~s~~G-----~R~~NED~~~~~~---~~~~~~l~~VaDG~G--G~~~g~~as~~~~~~l~~~~~~~~~~~~~l~~a  192 (389)
T 4da1_A          123 NVGCASQIG-----KRKENEDRFDFAQ---LTDEVLYFAVYDGHG--GPAAADFCHTHMEKCIMDLLPKEKNLETLLTLA  192 (389)
T ss_dssp             GCEEEEECT-----TSSSCCEEEEEEE---CSSSEEEEEEEEEES--STHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             EEEEECCCC-----CCCCCCCEEEEEE---CCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             279854889-----9988756066554---599879999997989--879999999999999999740265799999999


Q ss_pred             HHHHHHHHHHCCC-----CCCCCCCEEEEEEEECC-EEEEEECCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             9999799874338-----98898860899999698-89999826540799974398469884799899999779999997
Q 002510          176 YLTTNSQLHADVL-----DDSMSGTTAVTVLVRGR-TIYVANSGDSRAVLAERRGKEIVAVDLSIDQTPFREDELERVKL  249 (914)
Q Consensus       176 ~~~~~~~i~~~~~-----~~~~~GtT~~~~~i~~~-~l~vanvGDSR~~l~r~~~~~~~~~~lt~dh~~~~~~E~~Ri~~  249 (914)
                      |..+|..+.....     ....||||++++++.++ ++++|||||||+|++|++.    +.+||.||++.++.|++||..
T Consensus       193 ~~~~n~~i~~~~~~~~~~~~~~~GtT~~~~li~~~~~l~vanvGDSRayl~r~g~----~~~LT~DHs~~~~~E~~Ri~~  268 (389)
T 4da1_A          193 FLEIDKAFSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGK----PMKLTIDHTPERKDEKERIKK  268 (389)
T ss_dssp             HHHHHHHHHHHHHHSSCGGGGGCEECEEEEEEETTTEEEEEEESSCEEEEEETTE----EEECCCCCCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCEEEEEECCE----EEEECCCCCCCCHHHHHHHHH
T ss_conf             9998899987764124545689987079999976984999970063899997999----578598989999789999998


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEECCC-CCEE
Q ss_conf             298796302113677988656788778999999110159964762100013866557898113432999990899-9889
Q 002510          250 SGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVWELTND-HPFF  328 (914)
Q Consensus       250 ~gg~v~~~~~~~~~~~~~~~~~g~~~~~~~~p~r~~~~~~~~~g~~~tRslGd~~~~~~~v~~~Pdv~~~~l~~~-d~fl  328 (914)
                      .||.+....                   ..+ ++   .++   .+++||+||+..+|.++++++||+..+++.++ |.||
T Consensus       269 ~gG~v~~~~-------------------~~~-~~---~~g---~l~ltRalGd~~~k~~~v~~~pdi~~~~l~~~~dd~l  322 (389)
T 4da1_A          269 CGGFVAWNS-------------------LGQ-PH---VNG---RLAMTRSIGDLDLKTSGVIAEPETKRIKLHHADDSFL  322 (389)
T ss_dssp             HTCCEECC----------------------C-CE---ETT---TBSCSBCEECGGGGGGTCBCCCEEEEEECCSSSCEEE
T ss_pred             CCCEEECCC-------------------CCC-CC---CCC---EEEEEEEECCHHHCCCCCCCCCCEEEEEECCCCCCEE
T ss_conf             499684466-------------------777-62---888---2846753178654448777799458999747998299


Q ss_pred             EEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             997387311358679999998059989999999999999986029988885898464078766
Q 002510          329 VLASDGVFEFLSSQAVVDMVAKYKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHINGLKN  391 (914)
Q Consensus       329 il~SDGl~d~ls~~ei~~~v~~~~~~~~~a~~Lv~~a~~~~~~~~g~~DniTvIvv~~~~~~~  391 (914)
                      |||||||||+|+++++++++....+++.+|+.|++.|+.+     |+.||||||||++..+..
T Consensus       323 lL~SDGL~d~l~~~ei~~il~~~~~~~~~a~~Lv~~A~~~-----g~~DNiTvivv~~~~~~~  380 (389)
T 4da1_A          323 VLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQY-----GTEDNSTAVVVPFGAWGK  380 (389)
T ss_dssp             EEECHHHHTTCCHHHHHHHHHHSSSHHHHHHHHHHHHHHH-----TCCSCEEEEEEEECCC--
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCCCCEEEEEEEECCCCC
T ss_conf             9983995437898999999985699999999999999975-----999984999999658888


Done!