Query 002511
Match_columns 914
No_of_seqs 1084 out of 4682
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 01:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 4E-148 8E-153 1125.1 73.9 793 3-796 1-794 (794)
2 KOG0292 Vesicle coat complex C 100.0 3.2E-83 7E-88 674.6 71.8 765 8-815 2-821 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 1.4E-68 3.1E-73 569.9 42.0 433 320-764 2-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 7.3E-49 1.6E-53 378.1 29.3 329 8-379 108-478 (480)
5 KOG0318 WD40 repeat stress pro 100.0 8.4E-43 1.8E-47 350.1 51.8 458 8-490 52-599 (603)
6 KOG0271 Notchless-like WD40 re 100.0 6.7E-45 1.4E-49 350.8 28.8 325 49-416 107-479 (480)
7 KOG0291 WD40-repeat-containing 100.0 1.2E-40 2.7E-45 348.0 54.0 459 14-490 95-707 (893)
8 KOG0272 U4/U6 small nuclear ri 100.0 1E-43 2.2E-48 347.8 23.2 284 12-299 172-458 (459)
9 KOG1538 Uncharacterized conser 100.0 9E-42 2E-46 350.3 37.8 655 9-776 8-698 (1081)
10 KOG0286 G-protein beta subunit 100.0 8.9E-42 1.9E-46 318.5 33.0 291 4-298 44-342 (343)
11 KOG0318 WD40 repeat stress pro 100.0 2.5E-38 5.5E-43 318.0 49.7 426 10-454 142-602 (603)
12 KOG1524 WD40 repeat-containing 100.0 6.7E-39 1.4E-43 321.9 44.3 671 1-784 1-717 (737)
13 KOG0319 WD40-repeat-containing 100.0 2.4E-38 5.3E-43 331.0 48.4 431 13-490 60-532 (775)
14 KOG0306 WD40-repeat-containing 100.0 7.2E-39 1.6E-43 334.7 44.1 435 15-490 65-661 (888)
15 KOG0291 WD40-repeat-containing 100.0 2.5E-35 5.4E-40 308.5 63.6 429 13-490 53-547 (893)
16 KOG0279 G protein beta subunit 100.0 6.8E-39 1.5E-43 297.6 31.6 295 1-299 1-311 (315)
17 KOG2041 WD40 repeat protein [G 100.0 8.9E-38 1.9E-42 323.4 39.9 714 14-825 13-832 (1189)
18 KOG0276 Vesicle coat complex C 100.0 2.1E-36 4.6E-41 309.7 49.4 621 51-753 7-709 (794)
19 KOG0292 Vesicle coat complex C 100.0 7E-37 1.5E-41 324.6 47.0 639 6-751 42-781 (1202)
20 KOG0319 WD40-repeat-containing 100.0 1.8E-37 3.8E-42 324.6 41.8 473 6-490 95-616 (775)
21 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-39 2.9E-44 319.0 23.7 282 55-380 173-458 (459)
22 KOG0273 Beta-transducin family 100.0 1.8E-37 3.9E-42 307.9 33.7 325 9-381 173-522 (524)
23 KOG0295 WD40 repeat-containing 100.0 6.3E-38 1.4E-42 301.5 25.9 295 4-300 97-405 (406)
24 KOG0286 G-protein beta subunit 100.0 1.1E-36 2.3E-41 284.6 33.0 287 50-379 48-342 (343)
25 KOG0273 Beta-transducin family 100.0 9.4E-37 2E-41 302.9 31.4 277 16-297 236-519 (524)
26 KOG0279 G protein beta subunit 100.0 4.6E-35 1E-39 272.2 32.6 297 49-382 7-313 (315)
27 KOG0284 Polyadenylation factor 100.0 1.6E-37 3.4E-42 302.9 16.8 281 16-301 97-380 (464)
28 KOG0285 Pleiotropic regulator 100.0 4.6E-36 1E-40 287.3 25.9 291 4-300 140-438 (460)
29 KOG0315 G-protein beta subunit 100.0 1.5E-34 3.3E-39 263.8 30.1 270 28-303 11-290 (311)
30 KOG0265 U5 snRNP-specific prot 100.0 1.5E-34 3.3E-39 271.4 29.2 285 8-297 40-334 (338)
31 KOG0306 WD40-repeat-containing 100.0 5.9E-33 1.3E-37 290.6 42.6 411 26-490 33-619 (888)
32 KOG0296 Angio-associated migra 100.0 5.8E-34 1.3E-38 274.5 32.3 328 8-381 57-397 (399)
33 KOG0645 WD40 repeat protein [G 100.0 6.6E-34 1.4E-38 263.3 31.3 287 4-299 3-309 (312)
34 KOG0263 Transcription initiati 100.0 7.7E-35 1.7E-39 308.8 27.1 242 15-260 378-650 (707)
35 cd00200 WD40 WD40 domain, foun 100.0 3.3E-33 7.1E-38 295.4 39.3 287 8-298 2-288 (289)
36 KOG0284 Polyadenylation factor 100.0 2.4E-35 5.1E-40 287.7 16.7 281 57-381 96-379 (464)
37 KOG1538 Uncharacterized conser 100.0 9.9E-33 2.1E-37 284.1 34.0 698 5-779 43-815 (1081)
38 KOG0266 WD40 repeat-containing 100.0 4.5E-33 9.8E-38 307.5 33.4 289 8-300 151-453 (456)
39 KOG0293 WD40 repeat-containing 100.0 8.2E-34 1.8E-38 276.9 23.7 292 4-301 213-513 (519)
40 KOG0315 G-protein beta subunit 100.0 8.3E-33 1.8E-37 252.5 28.3 267 8-279 33-308 (311)
41 KOG2106 Uncharacterized conser 100.0 3E-31 6.5E-36 265.5 41.4 435 6-490 95-623 (626)
42 KOG0316 Conserved WD40 repeat- 100.0 7.8E-33 1.7E-37 250.5 26.6 283 8-297 10-296 (307)
43 KOG0263 Transcription initiati 100.0 1.8E-33 4E-38 298.4 25.5 244 52-299 373-647 (707)
44 KOG0296 Angio-associated migra 100.0 1.3E-32 2.9E-37 265.2 28.7 289 7-298 98-395 (399)
45 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.7E-37 263.0 25.0 249 49-303 143-391 (460)
46 KOG0275 Conserved WD40 repeat- 100.0 2.1E-33 4.6E-38 265.2 16.7 283 13-299 211-507 (508)
47 KOG0645 WD40 repeat protein [G 100.0 5.6E-31 1.2E-35 244.0 32.3 291 49-381 6-310 (312)
48 KOG0282 mRNA splicing factor [ 100.0 2.1E-33 4.7E-38 280.5 17.6 288 6-298 205-502 (503)
49 KOG0265 U5 snRNP-specific prot 100.0 1.3E-31 2.8E-36 251.8 28.5 286 49-378 39-334 (338)
50 KOG0281 Beta-TrCP (transducin 100.0 8E-34 1.7E-38 270.7 13.7 274 14-304 196-480 (499)
51 KOG0295 WD40 repeat-containing 100.0 2E-32 4.3E-37 263.8 22.8 289 49-380 100-404 (406)
52 PLN00181 protein SPA1-RELATED; 100.0 1.2E-30 2.5E-35 311.5 43.2 283 11-299 479-791 (793)
53 KOG0278 Serine/threonine kinas 100.0 4.8E-33 1E-37 253.9 17.1 290 7-303 6-299 (334)
54 KOG2048 WD40 repeat protein [G 100.0 2.2E-28 4.7E-33 254.6 48.8 424 14-487 24-499 (691)
55 KOG1408 WD40 repeat protein [F 100.0 8.1E-30 1.8E-34 264.8 34.6 436 9-490 72-710 (1080)
56 KOG0313 Microtubule binding pr 100.0 1.6E-30 3.5E-35 252.0 27.3 278 13-299 103-416 (423)
57 KOG0310 Conserved WD40 repeat- 100.0 1.4E-30 3.1E-35 261.0 26.2 276 15-297 26-305 (487)
58 KOG1539 WD repeat protein [Gen 100.0 4.2E-28 9E-33 257.7 46.1 465 12-497 73-652 (910)
59 cd00200 WD40 WD40 domain, foun 100.0 1.8E-29 3.9E-34 266.7 35.9 285 51-379 3-288 (289)
60 KOG1407 WD40 repeat protein [F 100.0 7.9E-30 1.7E-34 234.9 26.9 279 8-293 13-294 (313)
61 KOG0316 Conserved WD40 repeat- 100.0 8.9E-30 1.9E-34 230.7 25.4 247 49-303 9-259 (307)
62 KOG0266 WD40 repeat-containing 100.0 1.9E-29 4.1E-34 278.8 33.5 286 52-380 153-452 (456)
63 KOG1063 RNA polymerase II elon 100.0 3.1E-28 6.7E-33 253.5 40.1 479 3-490 42-696 (764)
64 KOG0643 Translation initiation 100.0 7.7E-30 1.7E-34 235.7 23.4 284 10-298 5-314 (327)
65 PLN00181 protein SPA1-RELATED; 100.0 1.9E-28 4.1E-33 292.5 41.7 260 36-301 457-738 (793)
66 KOG2041 WD40 repeat protein [G 100.0 7.6E-29 1.7E-33 257.5 32.3 719 3-781 59-923 (1189)
67 KOG1446 Histone H3 (Lys4) meth 100.0 4.9E-28 1.1E-32 230.7 34.8 290 4-301 3-303 (311)
68 KOG0288 WD40 repeat protein Ti 100.0 1.4E-30 2.9E-35 255.1 17.6 285 6-298 166-458 (459)
69 KOG0305 Anaphase promoting com 100.0 3.8E-29 8.2E-34 262.2 28.2 274 20-300 182-460 (484)
70 KOG0277 Peroxisomal targeting 100.0 4.8E-29 1E-33 228.8 22.8 279 19-299 12-307 (311)
71 KOG3617 WD40 and TPR repeat-co 100.0 4.7E-28 1E-32 256.0 32.0 777 1-828 1-944 (1416)
72 KOG0268 Sof1-like rRNA process 100.0 7.2E-30 1.6E-34 245.7 16.6 285 7-301 58-345 (433)
73 KOG0282 mRNA splicing factor [ 100.0 1.1E-29 2.4E-34 254.0 18.3 252 47-302 204-463 (503)
74 KOG1539 WD repeat protein [Gen 100.0 6.9E-27 1.5E-31 248.5 40.1 388 18-453 162-647 (910)
75 KOG2106 Uncharacterized conser 100.0 3.2E-25 6.9E-30 222.6 49.3 413 20-490 70-518 (626)
76 KOG0772 Uncharacterized conser 100.0 1.1E-28 2.4E-33 247.9 24.2 288 8-298 160-484 (641)
77 KOG0643 Translation initiation 100.0 1E-27 2.2E-32 221.6 28.3 296 52-379 5-314 (327)
78 KOG0299 U3 snoRNP-associated p 100.0 2.2E-28 4.8E-33 243.3 25.4 276 8-290 135-444 (479)
79 KOG0293 WD40 repeat-containing 100.0 1.2E-28 2.5E-33 241.1 19.7 253 4-260 258-514 (519)
80 KOG0281 Beta-TrCP (transducin 100.0 2.8E-29 6.1E-34 239.7 14.7 228 56-299 196-426 (499)
81 KOG1407 WD40 repeat protein [F 100.0 1.4E-27 3.1E-32 220.1 25.4 276 51-373 14-292 (313)
82 KOG0973 Histone transcription 100.0 1.5E-27 3.3E-32 262.5 28.4 282 13-298 11-352 (942)
83 KOG0289 mRNA splicing factor [ 100.0 2.5E-27 5.4E-32 233.5 26.5 279 16-297 220-502 (506)
84 KOG1408 WD40 repeat protein [F 100.0 8.4E-26 1.8E-30 235.2 38.5 540 18-592 40-716 (1080)
85 KOG0294 WD40 repeat-containing 100.0 4.4E-27 9.6E-32 222.8 26.3 246 6-261 34-283 (362)
86 KOG0301 Phospholipase A2-activ 100.0 2.1E-27 4.5E-32 247.6 26.4 283 4-302 3-289 (745)
87 KOG0278 Serine/threonine kinas 100.0 4E-28 8.6E-33 221.9 18.2 286 51-383 8-298 (334)
88 KOG0308 Conserved WD40 repeat- 100.0 4.2E-28 9.2E-33 250.7 20.1 277 20-299 29-325 (735)
89 KOG0283 WD40 repeat-containing 100.0 1.2E-27 2.5E-32 257.0 23.9 248 9-262 260-579 (712)
90 PTZ00421 coronin; Provisional 100.0 2.6E-26 5.7E-31 251.7 35.2 265 14-282 19-314 (493)
91 KOG0277 Peroxisomal targeting 100.0 6.8E-28 1.5E-32 221.3 18.7 242 15-258 60-308 (311)
92 KOG0275 Conserved WD40 repeat- 100.0 2.5E-28 5.4E-33 231.0 16.3 279 56-379 212-506 (508)
93 KOG0640 mRNA cleavage stimulat 100.0 2E-27 4.2E-32 224.0 22.0 288 10-301 107-426 (430)
94 KOG0647 mRNA export protein (c 100.0 1.1E-26 2.4E-31 218.9 26.6 270 13-290 25-312 (347)
95 KOG0274 Cdc4 and related F-box 100.0 1.1E-26 2.4E-31 254.4 30.1 272 14-300 207-481 (537)
96 KOG0310 Conserved WD40 repeat- 100.0 3.5E-27 7.6E-32 236.7 23.4 238 57-298 26-265 (487)
97 KOG1036 Mitotic spindle checkp 100.0 3E-26 6.5E-31 217.2 28.3 268 14-291 12-294 (323)
98 KOG1446 Histone H3 (Lys4) meth 100.0 3.2E-25 6.9E-30 211.6 34.9 248 47-300 4-261 (311)
99 KOG0300 WD40 repeat-containing 100.0 5.3E-27 1.2E-31 221.5 21.8 289 4-298 137-473 (481)
100 KOG0305 Anaphase promoting com 100.0 4.6E-27 1E-31 246.5 23.6 244 14-261 216-463 (484)
101 KOG2048 WD40 repeat protein [G 100.0 5.5E-24 1.2E-28 222.0 46.1 446 9-497 62-553 (691)
102 KOG0641 WD40 repeat protein [G 100.0 2.9E-25 6.2E-30 199.9 31.1 280 14-299 31-347 (350)
103 KOG0283 WD40 repeat-containing 100.0 9.6E-27 2.1E-31 249.9 24.0 250 49-304 258-579 (712)
104 PTZ00420 coronin; Provisional 99.9 4.3E-25 9.3E-30 242.6 36.5 245 33-283 50-318 (568)
105 KOG1063 RNA polymerase II elon 99.9 1.1E-23 2.3E-28 220.0 43.6 426 20-490 19-599 (764)
106 KOG0274 Cdc4 and related F-box 99.9 5.4E-26 1.2E-30 249.0 28.1 247 8-267 242-490 (537)
107 PTZ00421 coronin; Provisional 99.9 2.7E-25 5.8E-30 243.8 32.4 227 10-240 70-314 (493)
108 KOG0308 Conserved WD40 repeat- 99.9 1.2E-26 2.6E-31 240.1 20.3 229 67-297 35-281 (735)
109 KOG0973 Histone transcription 99.9 9.4E-26 2E-30 248.5 28.6 284 56-382 12-355 (942)
110 KOG0313 Microtubule binding pr 99.9 6.8E-26 1.5E-30 220.0 22.9 250 4-259 133-418 (423)
111 KOG0268 Sof1-like rRNA process 99.9 7E-27 1.5E-31 225.3 15.2 288 49-385 58-348 (433)
112 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.6E-31 227.5 15.9 285 49-379 167-458 (459)
113 KOG1274 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 216.3 50.4 276 13-298 11-297 (933)
114 KOG0640 mRNA cleavage stimulat 99.9 1.4E-25 3E-30 211.5 21.2 288 51-381 106-425 (430)
115 KOG0299 U3 snoRNP-associated p 99.9 4.1E-25 9E-30 220.1 25.4 244 50-299 135-408 (479)
116 PTZ00420 coronin; Provisional 99.9 8.8E-24 1.9E-28 232.3 36.9 224 75-301 50-293 (568)
117 KOG0264 Nucleosome remodeling 99.9 2.7E-25 5.9E-30 221.8 22.4 246 13-259 122-404 (422)
118 KOG0289 mRNA splicing factor [ 99.9 1E-24 2.2E-29 215.2 25.6 235 59-297 221-458 (506)
119 KOG0772 Uncharacterized conser 99.9 7.8E-25 1.7E-29 220.4 24.7 238 51-291 161-429 (641)
120 KOG0647 mRNA export protein (c 99.9 3.1E-24 6.6E-29 202.5 26.2 270 55-372 25-312 (347)
121 KOG2055 WD40 repeat protein [G 99.9 2.7E-24 6E-29 214.0 25.5 279 15-299 213-510 (514)
122 KOG0641 WD40 repeat protein [G 99.9 2.7E-23 5.9E-28 187.2 28.0 245 10-259 84-349 (350)
123 KOG0639 Transducin-like enhanc 99.9 1.2E-24 2.6E-29 217.9 20.4 284 5-297 410-700 (705)
124 KOG1332 Vesicle coat complex C 99.9 9.7E-25 2.1E-29 199.5 18.0 252 8-259 4-286 (299)
125 KOG1332 Vesicle coat complex C 99.9 1E-24 2.2E-29 199.3 17.8 249 95-380 7-284 (299)
126 KOG2096 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 198.6 26.3 281 9-295 80-397 (420)
127 KOG0300 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 202.5 21.7 246 48-298 139-425 (481)
128 KOG0294 WD40 repeat-containing 99.9 3.6E-23 7.7E-28 196.5 27.6 265 29-303 3-283 (362)
129 KOG0650 WD40 repeat nucleolar 99.9 5.2E-24 1.1E-28 218.3 22.4 290 3-298 388-732 (733)
130 KOG2096 WD40 repeat protein [G 99.9 2.8E-23 6E-28 197.0 25.4 288 94-415 81-399 (420)
131 KOG0301 Phospholipase A2-activ 99.9 3E-23 6.6E-28 216.8 27.0 282 48-384 5-290 (745)
132 KOG0646 WD40 repeat protein [G 99.9 4.4E-24 9.5E-29 213.4 19.8 252 29-283 52-331 (476)
133 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.8E-28 209.9 22.4 244 55-299 122-402 (422)
134 KOG4283 Transcription-coupled 99.9 5.5E-23 1.2E-27 192.9 24.4 283 12-300 40-364 (397)
135 KOG1036 Mitotic spindle checkp 99.9 1.3E-22 2.7E-27 192.7 27.0 269 56-374 12-295 (323)
136 KOG4328 WD40 protein [Function 99.9 2.5E-23 5.4E-28 207.2 23.1 289 9-300 180-494 (498)
137 KOG1273 WD40 repeat protein [G 99.9 1.9E-22 4.1E-27 191.2 24.0 280 18-304 26-325 (405)
138 KOG0646 WD40 repeat protein [G 99.9 1.4E-22 3.1E-27 202.6 24.2 260 36-299 17-305 (476)
139 KOG0267 Microtubule severing p 99.9 1.2E-24 2.6E-29 227.9 9.6 260 26-295 3-262 (825)
140 KOG1445 Tumor-specific antigen 99.9 4.3E-22 9.4E-27 205.0 27.3 132 10-141 74-212 (1012)
141 KOG2055 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 200.1 24.7 285 57-381 213-511 (514)
142 KOG0269 WD40 repeat-containing 99.9 8.9E-24 1.9E-28 223.3 14.2 244 17-262 89-343 (839)
143 KOG0639 Transducin-like enhanc 99.9 7E-23 1.5E-27 205.4 18.8 274 97-416 417-702 (705)
144 KOG0267 Microtubule severing p 99.9 4E-24 8.7E-29 224.0 9.5 239 8-250 21-259 (825)
145 KOG0269 WD40 repeat-containing 99.9 9.9E-23 2.1E-27 215.5 19.1 278 16-298 40-337 (839)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-20 3.7E-25 199.8 36.5 267 28-303 2-281 (300)
147 KOG1273 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 185.0 23.8 236 60-299 26-278 (405)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.6E-20 5.6E-25 198.4 34.3 265 8-281 24-300 (300)
149 KOG0270 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 197.2 18.5 244 19-264 177-454 (463)
150 KOG2445 Nuclear pore complex c 99.9 1.3E-20 2.9E-25 178.5 26.1 252 7-259 5-318 (361)
151 KOG1274 WD40 repeat protein [G 99.9 1.4E-20 3E-25 203.5 28.8 241 55-301 11-262 (933)
152 KOG1524 WD40 repeat-containing 99.9 3.4E-19 7.4E-24 180.7 37.0 623 56-779 13-701 (737)
153 KOG2445 Nuclear pore complex c 99.9 5.2E-20 1.1E-24 174.5 27.6 245 54-299 10-316 (361)
154 KOG4328 WD40 protein [Function 99.9 1.2E-20 2.6E-25 188.3 24.4 252 43-297 172-446 (498)
155 KOG4378 Nuclear protein COP1 [ 99.9 3.8E-21 8.2E-26 192.9 20.7 262 17-283 36-305 (673)
156 KOG0302 Ribosome Assembly prot 99.9 6.4E-21 1.4E-25 185.4 21.4 247 7-256 143-435 (440)
157 KOG0650 WD40 repeat nucleolar 99.9 1.4E-20 3.1E-25 193.3 23.9 245 49-298 392-677 (733)
158 KOG0302 Ribosome Assembly prot 99.9 6.9E-21 1.5E-25 185.2 20.5 241 55-297 149-435 (440)
159 KOG0270 WD40 repeat-containing 99.9 1.4E-20 3E-25 187.3 22.3 275 20-299 130-447 (463)
160 KOG2919 Guanine nucleotide-bin 99.9 2.2E-20 4.7E-25 178.0 22.5 272 18-292 52-361 (406)
161 KOG0307 Vesicle coat complex C 99.9 4.6E-22 1E-26 220.4 13.0 280 17-298 8-324 (1049)
162 KOG1034 Transcriptional repres 99.9 3.3E-20 7.2E-25 177.4 22.0 283 10-299 33-381 (385)
163 KOG1963 WD40 repeat protein [G 99.9 6E-18 1.3E-22 183.2 41.5 407 11-456 12-540 (792)
164 KOG0321 WD40 repeat-containing 99.9 6.7E-20 1.5E-24 190.0 22.9 276 21-300 55-390 (720)
165 KOG1009 Chromatin assembly com 99.8 7.5E-19 1.6E-23 173.1 27.6 317 142-488 13-367 (434)
166 COG2319 FOG: WD40 repeat [Gene 99.8 5.3E-17 1.1E-21 182.9 47.4 286 10-300 60-358 (466)
167 KOG4378 Nuclear protein COP1 [ 99.8 6.9E-20 1.5E-24 184.0 20.6 264 32-300 7-279 (673)
168 KOG1188 WD40 repeat protein [G 99.8 8.7E-20 1.9E-24 175.7 20.3 274 28-302 41-347 (376)
169 KOG0642 Cell-cycle nuclear pro 99.8 1.3E-20 2.8E-25 193.1 14.9 264 5-270 284-572 (577)
170 KOG4497 Uncharacterized conser 99.8 3.8E-19 8.3E-24 169.8 22.5 384 20-489 13-428 (447)
171 KOG1009 Chromatin assembly com 99.8 6E-19 1.3E-23 173.8 23.3 279 14-297 12-368 (434)
172 KOG4283 Transcription-coupled 99.8 5.7E-19 1.2E-23 166.1 21.9 244 11-258 97-364 (397)
173 KOG0307 Vesicle coat complex C 99.8 1.4E-20 3.1E-25 208.8 13.2 246 15-262 64-330 (1049)
174 KOG1963 WD40 repeat protein [G 99.8 3.2E-17 7E-22 177.6 38.4 418 5-460 47-589 (792)
175 KOG1007 WD repeat protein TSSC 99.8 6.9E-19 1.5E-23 165.2 20.2 250 7-259 55-361 (370)
176 KOG1034 Transcriptional repres 99.8 3.8E-19 8.2E-24 170.2 18.6 244 13-259 87-383 (385)
177 KOG0644 Uncharacterized conser 99.8 2E-20 4.3E-25 199.1 10.2 282 4-299 179-466 (1113)
178 KOG1007 WD repeat protein TSSC 99.8 2.8E-18 6E-23 161.2 21.1 267 28-297 27-357 (370)
179 KOG0321 WD40 repeat-containing 99.8 1.6E-18 3.4E-23 180.0 21.2 251 9-262 94-394 (720)
180 KOG4227 WD40 repeat protein [G 99.8 5.3E-18 1.2E-22 165.4 23.5 294 7-304 48-390 (609)
181 KOG3617 WD40 and TPR repeat-co 99.8 8.8E-18 1.9E-22 178.9 25.7 115 647-762 946-1061(1416)
182 KOG1517 Guanine nucleotide bin 99.8 7.3E-18 1.6E-22 184.3 25.7 288 11-301 1060-1381(1387)
183 KOG1445 Tumor-specific antigen 99.8 2.4E-18 5.2E-23 177.7 20.0 148 144-292 629-785 (1012)
184 KOG1587 Cytoplasmic dynein int 99.8 1.4E-17 2.9E-22 181.2 26.6 261 37-299 222-514 (555)
185 KOG0322 G-protein beta subunit 99.8 9E-19 2E-23 162.5 14.2 286 6-299 5-321 (323)
186 KOG0649 WD40 repeat protein [G 99.8 2.2E-16 4.8E-21 144.9 27.6 268 16-297 11-312 (325)
187 KOG2919 Guanine nucleotide-bin 99.8 8.9E-18 1.9E-22 160.4 19.2 233 15-250 104-361 (406)
188 KOG0642 Cell-cycle nuclear pro 99.8 4E-18 8.7E-23 175.0 15.9 246 52-300 289-560 (577)
189 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-15 2.4E-20 172.1 37.5 291 6-302 146-443 (466)
190 KOG1912 WD40 repeat protein [G 99.8 4E-14 8.6E-19 150.6 44.6 366 3-398 43-572 (1062)
191 KOG0290 Conserved WD40 repeat- 99.8 1.8E-16 3.8E-21 149.4 23.9 273 17-293 46-358 (364)
192 KOG1310 WD40 repeat protein [G 99.8 5.3E-17 1.1E-21 165.5 21.2 213 4-218 39-304 (758)
193 KOG0649 WD40 repeat protein [G 99.8 4E-16 8.8E-21 143.2 24.6 227 59-297 12-270 (325)
194 PF04762 IKI3: IKI3 family; I 99.8 8.6E-12 1.9E-16 147.3 66.0 545 16-607 22-713 (928)
195 KOG1587 Cytoplasmic dynein int 99.7 1.2E-16 2.5E-21 174.0 22.9 243 15-259 242-516 (555)
196 KOG4497 Uncharacterized conser 99.7 3.3E-16 7.1E-21 150.0 21.9 308 15-378 48-427 (447)
197 KOG1920 IkappaB kinase complex 99.7 7.4E-14 1.6E-18 156.7 43.4 277 14-297 17-361 (1265)
198 KOG1188 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 154.2 18.6 197 70-268 41-251 (376)
199 KOG1334 WD40 repeat protein [G 99.7 2.3E-17 5E-22 166.2 14.2 296 4-301 131-466 (559)
200 KOG1523 Actin-related protein 99.7 3.3E-16 7.2E-21 149.9 20.6 243 52-297 5-275 (361)
201 KOG0303 Actin-binding protein 99.7 3.2E-16 6.9E-21 153.9 20.3 227 10-240 76-320 (472)
202 KOG4227 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 150.1 22.5 245 51-299 50-320 (609)
203 KOG0290 Conserved WD40 repeat- 99.7 4.6E-16 9.9E-21 146.7 19.6 238 13-255 94-361 (364)
204 KOG0303 Actin-binding protein 99.7 2.2E-15 4.8E-20 148.0 22.9 203 93-299 75-292 (472)
205 KOG1272 WD40-repeat-containing 99.7 3.9E-17 8.3E-22 163.6 10.8 270 17-297 131-405 (545)
206 PRK01742 tolB translocation pr 99.7 1.8E-15 3.9E-20 167.3 24.0 235 36-282 183-426 (429)
207 KOG1523 Actin-related protein 99.7 1.3E-15 2.8E-20 145.9 19.4 234 13-250 8-269 (361)
208 PRK11028 6-phosphogluconolacto 99.7 1.8E-14 3.9E-19 154.7 31.1 259 32-298 7-301 (330)
209 KOG2110 Uncharacterized conser 99.7 7.3E-14 1.6E-18 136.8 31.7 236 14-260 4-249 (391)
210 KOG2110 Uncharacterized conser 99.7 4.7E-14 1E-18 138.1 29.8 233 58-299 6-246 (391)
211 KOG1517 Guanine nucleotide bin 99.7 5E-15 1.1E-19 162.5 24.3 288 58-382 1065-1381(1387)
212 KOG2111 Uncharacterized conser 99.7 9.7E-14 2.1E-18 133.3 30.0 235 59-302 7-257 (346)
213 KOG2111 Uncharacterized conser 99.7 1.7E-13 3.7E-18 131.6 30.9 236 17-260 7-257 (346)
214 KOG2139 WD40 repeat protein [G 99.7 2.9E-14 6.2E-19 138.8 25.0 253 16-294 99-368 (445)
215 PRK11028 6-phosphogluconolacto 99.7 1.8E-13 4E-18 146.9 34.0 266 74-382 7-304 (330)
216 KOG0322 G-protein beta subunit 99.7 1.9E-15 4.1E-20 140.7 15.2 287 49-381 6-322 (323)
217 KOG1310 WD40 repeat protein [G 99.7 9.4E-16 2E-20 156.5 14.4 217 49-266 42-310 (758)
218 KOG3616 Selective LIM binding 99.7 4.4E-14 9.5E-19 149.3 26.2 268 451-790 323-613 (1636)
219 PF02239 Cytochrom_D1: Cytochr 99.6 2.2E-13 4.7E-18 145.2 31.7 289 7-298 28-344 (369)
220 PRK01742 tolB translocation pr 99.6 7.2E-15 1.6E-19 162.6 20.6 222 8-240 196-426 (429)
221 KOG0644 Uncharacterized conser 99.6 3.2E-16 7E-21 167.4 8.0 237 49-299 182-424 (1113)
222 PF02239 Cytochrom_D1: Cytochr 99.6 6.7E-13 1.5E-17 141.5 32.5 257 28-289 6-286 (369)
223 KOG1272 WD40-repeat-containing 99.6 1.5E-15 3.1E-20 152.4 9.9 231 57-298 129-359 (545)
224 KOG1240 Protein kinase contain 99.6 1.2E-13 2.7E-18 154.4 26.0 256 4-260 1037-1335(1431)
225 KOG1354 Serine/threonine prote 99.6 1.1E-13 2.4E-18 133.9 21.7 245 14-262 24-362 (433)
226 KOG0771 Prolactin regulatory e 99.6 9.7E-15 2.1E-19 145.7 14.9 195 61-259 148-354 (398)
227 KOG1240 Protein kinase contain 99.6 2.5E-13 5.3E-18 152.0 27.0 262 42-306 1034-1339(1431)
228 KOG3881 Uncharacterized conser 99.6 1.4E-13 3.1E-18 135.8 21.3 260 13-282 53-342 (412)
229 KOG0771 Prolactin regulatory e 99.6 1.3E-14 2.8E-19 144.8 14.1 195 19-217 148-354 (398)
230 KOG2139 WD40 repeat protein [G 99.6 2.2E-13 4.8E-18 132.7 22.1 189 100-294 99-303 (445)
231 KOG2321 WD40 repeat protein [G 99.6 3.6E-13 7.7E-18 138.9 24.2 276 13-297 49-339 (703)
232 PRK03629 tolB translocation pr 99.6 9.8E-13 2.1E-17 145.1 29.3 234 37-281 179-427 (429)
233 KOG1334 WD40 repeat protein [G 99.6 1.2E-14 2.7E-19 146.8 12.8 255 49-304 134-427 (559)
234 COG5354 Uncharacterized protei 99.6 3E-12 6.4E-17 130.8 28.6 271 11-292 28-336 (561)
235 PRK02889 tolB translocation pr 99.6 5.5E-13 1.2E-17 147.3 24.7 235 37-282 176-425 (427)
236 PF04762 IKI3: IKI3 family; I 99.6 1.5E-08 3.3E-13 120.1 63.0 234 58-299 22-331 (928)
237 PRK04922 tolB translocation pr 99.5 1.5E-12 3.3E-17 144.4 27.2 234 37-281 184-432 (433)
238 PRK05137 tolB translocation pr 99.5 3.4E-12 7.4E-17 141.9 29.5 234 37-282 182-433 (435)
239 PRK03629 tolB translocation pr 99.5 1.1E-12 2.5E-17 144.5 25.1 222 9-240 192-428 (429)
240 KOG2315 Predicted translation 99.5 6.8E-12 1.5E-16 129.9 28.0 271 15-297 34-380 (566)
241 KOG2315 Predicted translation 99.5 3.4E-11 7.5E-16 124.8 32.6 319 36-408 10-373 (566)
242 COG5354 Uncharacterized protei 99.5 2.5E-11 5.5E-16 124.1 30.9 356 40-484 15-420 (561)
243 KOG2394 WD40 protein DMR-N9 [G 99.5 7E-13 1.5E-17 135.8 19.0 219 17-239 125-384 (636)
244 COG4946 Uncharacterized protei 99.5 7.5E-10 1.6E-14 112.1 39.3 181 108-296 275-468 (668)
245 PRK02889 tolB translocation pr 99.5 1.3E-12 2.9E-17 144.3 22.1 222 9-240 189-425 (427)
246 KOG1912 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 132.1 27.7 443 15-472 15-572 (1062)
247 KOG2314 Translation initiation 99.5 1.4E-11 3.1E-16 126.7 27.1 263 18-291 213-512 (698)
248 PRK04922 tolB translocation pr 99.5 2.2E-12 4.9E-17 143.1 22.6 222 8-239 196-432 (433)
249 KOG3881 Uncharacterized conser 99.5 2.4E-12 5.2E-17 127.2 19.3 221 13-240 103-342 (412)
250 PRK05137 tolB translocation pr 99.5 6.1E-12 1.3E-16 139.9 25.3 222 8-240 194-433 (435)
251 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-12 7.2E-17 131.0 18.8 219 59-281 125-384 (636)
252 KOG1409 Uncharacterized conser 99.5 4.3E-12 9.4E-17 123.1 18.5 212 4-218 13-271 (404)
253 KOG2314 Translation initiation 99.4 9.3E-11 2E-15 120.9 27.5 307 59-408 212-556 (698)
254 PF08662 eIF2A: Eukaryotic tra 99.4 1.7E-11 3.7E-16 118.5 20.7 153 18-178 8-183 (194)
255 KOG0974 WD-repeat protein WDR6 99.4 4.6E-10 1E-14 125.0 34.3 197 16-218 88-289 (967)
256 KOG1354 Serine/threonine prote 99.4 4.3E-11 9.3E-16 116.2 22.3 239 57-299 25-357 (433)
257 PRK00178 tolB translocation pr 99.4 1.8E-10 3.9E-15 128.5 29.1 234 38-282 180-428 (430)
258 PF08662 eIF2A: Eukaryotic tra 99.4 4.7E-11 1E-15 115.4 21.0 156 103-267 9-186 (194)
259 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.3E-15 129.1 28.3 232 37-279 170-416 (417)
260 PRK04792 tolB translocation pr 99.4 2.2E-10 4.9E-15 126.9 27.5 233 38-281 199-446 (448)
261 KOG1920 IkappaB kinase complex 99.3 7.8E-08 1.7E-12 109.4 45.4 196 99-301 68-322 (1265)
262 PRK01029 tolB translocation pr 99.3 3.4E-10 7.3E-15 124.4 26.3 227 9-241 178-426 (428)
263 PF10282 Lactonase: Lactonase, 99.3 1.3E-08 2.8E-13 109.3 37.7 266 30-297 2-318 (345)
264 PRK01029 tolB translocation pr 99.3 5.6E-10 1.2E-14 122.6 27.8 240 37-283 165-426 (428)
265 PRK00178 tolB translocation pr 99.3 2.4E-10 5.3E-15 127.5 25.4 222 9-240 192-428 (430)
266 KOG4547 WD40 repeat-containing 99.3 1.8E-10 3.9E-15 120.7 22.2 189 24-217 2-220 (541)
267 TIGR02800 propeller_TolB tol-p 99.3 2.4E-10 5.2E-15 127.5 24.7 220 8-237 182-416 (417)
268 KOG2321 WD40 repeat protein [G 99.3 5.1E-11 1.1E-15 123.3 16.6 195 20-217 138-343 (703)
269 PF10282 Lactonase: Lactonase, 99.3 1.1E-08 2.4E-13 109.8 35.3 262 15-279 36-345 (345)
270 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.4E-08 7.4E-13 102.7 35.4 261 26-297 11-326 (352)
271 KOG0280 Uncharacterized conser 99.3 5.4E-10 1.2E-14 106.6 20.1 250 36-289 45-319 (339)
272 KOG0280 Uncharacterized conser 99.3 5.9E-10 1.3E-14 106.3 20.0 240 16-257 70-331 (339)
273 PRK04792 tolB translocation pr 99.3 4E-10 8.7E-15 124.9 22.3 222 10-240 212-447 (448)
274 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.6E-08 3.5E-13 105.1 32.0 238 23-267 53-338 (352)
275 KOG0974 WD-repeat protein WDR6 99.3 2.4E-10 5.3E-15 127.1 19.3 268 16-300 8-287 (967)
276 KOG1064 RAVE (regulator of V-A 99.3 2.3E-11 5E-16 141.1 11.4 200 11-226 2204-2407(2439)
277 TIGR03300 assembly_YfgL outer 99.2 9E-09 2E-13 112.8 31.4 255 27-298 65-335 (377)
278 KOG4547 WD40 repeat-containing 99.2 1.9E-09 4.1E-14 113.2 23.4 187 67-259 3-220 (541)
279 KOG2114 Vacuolar assembly/sort 99.2 3.2E-08 6.9E-13 108.3 32.6 464 193-781 31-535 (933)
280 KOG3616 Selective LIM binding 99.2 2.8E-09 6.1E-14 113.6 23.7 143 640-782 558-720 (1636)
281 TIGR03300 assembly_YfgL outer 99.2 1.3E-08 2.7E-13 111.7 29.0 256 26-297 104-375 (377)
282 COG4946 Uncharacterized protei 99.2 9.6E-08 2.1E-12 97.2 31.6 215 23-248 274-507 (668)
283 KOG1409 Uncharacterized conser 99.2 3.3E-09 7.2E-14 103.5 19.2 246 49-300 16-269 (404)
284 KOG1064 RAVE (regulator of V-A 99.1 2.8E-10 6E-15 132.4 12.4 197 56-269 2207-2408(2439)
285 PLN02919 haloacid dehalogenase 99.1 1.1E-07 2.3E-12 115.5 33.2 238 19-263 571-892 (1057)
286 COG5170 CDC55 Serine/threonine 99.1 5.1E-09 1.1E-13 100.5 16.3 240 14-257 25-365 (460)
287 KOG4532 WD40-like repeat conta 99.1 3.2E-08 7E-13 93.3 21.0 239 20-260 72-332 (344)
288 COG5170 CDC55 Serine/threonine 99.1 1.6E-08 3.4E-13 97.2 19.1 238 57-298 26-364 (460)
289 KOG0309 Conserved WD40 repeat- 99.0 1.8E-09 3.9E-14 115.1 13.2 281 15-299 24-337 (1081)
290 COG2706 3-carboxymuconate cycl 99.0 1.9E-06 4.1E-11 86.0 32.9 211 36-248 15-262 (346)
291 PRK04043 tolB translocation pr 99.0 8E-08 1.7E-12 104.9 25.1 192 16-218 188-401 (419)
292 PF15492 Nbas_N: Neuroblastoma 99.0 4.9E-07 1.1E-11 87.3 26.7 237 20-269 2-269 (282)
293 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.6E-14 112.4 9.6 280 9-297 729-1032(1034)
294 PRK04043 tolB translocation pr 99.0 3.8E-07 8.3E-12 99.6 29.7 210 37-259 169-400 (419)
295 KOG0309 Conserved WD40 repeat- 99.0 3.3E-09 7.1E-14 113.2 12.6 243 18-260 70-340 (1081)
296 KOG4649 PQQ (pyrrolo-quinoline 99.0 3.9E-06 8.5E-11 79.3 30.9 189 27-226 23-215 (354)
297 COG2706 3-carboxymuconate cycl 99.0 2.4E-06 5.2E-11 85.3 31.1 251 12-266 36-330 (346)
298 KOG4190 Uncharacterized conser 99.0 1.8E-09 3.8E-14 111.1 9.6 242 49-297 727-984 (1034)
299 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.4E-13 102.4 14.6 162 17-182 64-232 (390)
300 PLN02919 haloacid dehalogenase 99.0 8.7E-07 1.9E-11 107.7 33.3 236 61-300 571-887 (1057)
301 KOG4714 Nucleoporin [Nuclear s 98.9 5.5E-09 1.2E-13 98.1 10.8 161 14-174 88-255 (319)
302 PF08450 SGL: SMP-30/Gluconola 98.9 2.8E-06 6.1E-11 86.8 32.0 218 62-290 4-244 (246)
303 PF13360 PQQ_2: PQQ-like domai 98.9 5.6E-07 1.2E-11 91.8 26.3 221 36-266 2-237 (238)
304 KOG4532 WD40-like repeat conta 98.9 2.9E-07 6.3E-12 87.1 21.3 226 34-270 49-293 (344)
305 PRK11138 outer membrane biogen 98.9 1.3E-06 2.8E-11 96.1 30.6 259 26-297 68-349 (394)
306 KOG1832 HIV-1 Vpr-binding prot 98.9 1E-09 2.3E-14 119.0 4.9 266 4-290 1090-1378(1516)
307 PF08450 SGL: SMP-30/Gluconola 98.9 4.4E-06 9.6E-11 85.4 31.4 217 20-248 4-244 (246)
308 PF07433 DUF1513: Protein of u 98.9 3.4E-06 7.4E-11 84.5 27.6 232 16-255 5-281 (305)
309 PF04053 Coatomer_WDAD: Coatom 98.9 2.4E-05 5.2E-10 85.1 36.3 184 229-488 32-219 (443)
310 PRK11138 outer membrane biogen 98.8 1.8E-06 4E-11 94.9 27.9 256 27-297 120-390 (394)
311 KOG4714 Nucleoporin [Nuclear s 98.8 7.1E-08 1.5E-12 90.7 13.5 197 18-218 39-255 (319)
312 KOG1832 HIV-1 Vpr-binding prot 98.8 2.3E-09 4.9E-14 116.5 4.0 220 48-287 1092-1317(1516)
313 KOG3914 WD repeat protein WDR4 98.8 8.2E-08 1.8E-12 96.3 14.0 161 59-226 64-232 (390)
314 KOG3621 WD40 repeat-containing 98.7 2.1E-06 4.5E-11 92.7 23.4 204 14-224 32-252 (726)
315 PF07433 DUF1513: Protein of u 98.7 2.5E-05 5.3E-10 78.5 28.9 227 59-295 6-279 (305)
316 KOG0882 Cyclophilin-related pe 98.7 1.9E-07 4.1E-12 94.6 14.1 249 14-268 8-314 (558)
317 KOG1275 PAB-dependent poly(A) 98.7 3.5E-07 7.7E-12 100.7 16.9 182 68-257 146-340 (1118)
318 KOG4649 PQQ (pyrrolo-quinoline 98.7 0.00014 3.1E-09 69.1 30.1 187 111-317 23-213 (354)
319 PF00930 DPPIV_N: Dipeptidyl p 98.7 1.9E-05 4.2E-10 85.1 28.1 263 24-291 1-347 (353)
320 PF15492 Nbas_N: Neuroblastoma 98.7 2.2E-05 4.8E-10 76.2 24.9 223 63-299 3-257 (282)
321 PF13360 PQQ_2: PQQ-like domai 98.6 2.6E-05 5.6E-10 79.4 27.3 211 77-298 1-227 (238)
322 KOG1275 PAB-dependent poly(A) 98.6 9.2E-07 2E-11 97.6 16.0 182 26-215 146-340 (1118)
323 KOG2114 Vacuolar assembly/sort 98.6 6.8E-06 1.5E-10 90.6 22.1 204 21-229 29-256 (933)
324 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.6E-12 91.9 8.7 152 115-271 228-388 (425)
325 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.5E-12 91.2 8.8 161 64-228 218-387 (425)
326 KOG2066 Vacuolar assembly/sort 98.6 2E-06 4.4E-11 94.0 17.1 182 15-217 39-233 (846)
327 COG5290 IkappaB kinase complex 98.5 0.00047 1E-08 75.5 31.8 82 694-775 904-987 (1243)
328 cd00216 PQQ_DH Dehydrogenases 98.5 0.00014 3E-09 82.0 29.7 262 27-297 61-420 (488)
329 PF14583 Pectate_lyase22: Olig 98.5 0.00096 2.1E-08 69.4 32.5 245 43-292 16-303 (386)
330 KOG1645 RING-finger-containing 98.4 1.6E-05 3.4E-10 80.1 18.3 251 4-259 182-461 (463)
331 PF06433 Me-amine-dh_H: Methyl 98.4 0.00051 1.1E-08 70.0 28.8 245 19-270 39-331 (342)
332 cd00216 PQQ_DH Dehydrogenases 98.4 0.00023 5.1E-09 80.2 28.4 234 28-270 111-435 (488)
333 KOG2066 Vacuolar assembly/sort 98.4 2.6E-05 5.6E-10 85.6 19.3 155 11-173 54-233 (846)
334 KOG1645 RING-finger-containing 98.4 3.6E-05 7.9E-10 77.6 18.7 253 39-297 175-457 (463)
335 PF00400 WD40: WD domain, G-be 98.4 1.5E-06 3.3E-11 59.2 6.5 39 47-85 1-39 (39)
336 PF00400 WD40: WD domain, G-be 98.4 1.7E-06 3.7E-11 59.0 6.7 39 89-127 1-39 (39)
337 PF14583 Pectate_lyase22: Olig 98.3 0.0016 3.6E-08 67.7 29.9 266 22-291 42-370 (386)
338 KOG0882 Cyclophilin-related pe 98.3 1.2E-05 2.7E-10 81.9 14.0 208 56-267 8-239 (558)
339 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00071 1.5E-08 73.0 28.8 221 66-290 1-299 (353)
340 PF08596 Lgl_C: Lethal giant l 98.2 0.00044 9.5E-09 74.4 25.1 266 17-291 3-326 (395)
341 PF06977 SdiA-regulated: SdiA- 98.2 0.00049 1.1E-08 68.5 23.2 201 9-214 15-247 (248)
342 KOG1008 Uncharacterized conser 98.2 4.5E-07 9.7E-12 96.2 1.1 199 15-217 56-275 (783)
343 PRK02888 nitrous-oxide reducta 98.2 0.00057 1.2E-08 75.4 24.1 217 26-260 140-405 (635)
344 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0032 6.9E-08 68.9 29.1 210 20-241 33-271 (410)
345 PF02897 Peptidase_S9_N: Proly 98.1 0.0066 1.4E-07 67.5 32.2 243 17-264 125-409 (414)
346 COG0823 TolB Periplasmic compo 98.1 0.00016 3.4E-09 78.6 18.4 183 10-198 187-382 (425)
347 PF08596 Lgl_C: Lethal giant l 98.1 0.002 4.3E-08 69.4 26.0 228 59-297 3-286 (395)
348 PF11768 DUF3312: Protein of u 98.1 0.00068 1.5E-08 72.9 21.9 115 57-175 205-331 (545)
349 KOG3621 WD40 repeat-containing 98.1 0.00055 1.2E-08 74.6 21.0 138 56-194 32-179 (726)
350 PF06433 Me-amine-dh_H: Methyl 98.0 0.022 4.7E-07 58.5 31.2 253 37-299 17-318 (342)
351 COG0823 TolB Periplasmic compo 98.0 0.00034 7.4E-09 76.0 19.5 203 38-249 174-389 (425)
352 PF11768 DUF3312: Protein of u 98.0 0.00012 2.6E-09 78.5 15.5 118 18-137 208-337 (545)
353 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0076 1.6E-07 66.0 29.9 192 80-284 62-272 (410)
354 PF06977 SdiA-regulated: SdiA- 97.9 0.009 1.9E-07 59.6 25.8 200 52-256 16-247 (248)
355 PF00780 CNH: CNH domain; Int 97.9 0.011 2.4E-07 61.5 27.9 228 25-270 5-266 (275)
356 PRK02888 nitrous-oxide reducta 97.9 0.0019 4.1E-08 71.4 22.2 215 23-249 200-451 (635)
357 COG3391 Uncharacterized conser 97.9 0.02 4.4E-07 62.2 30.1 261 17-282 32-309 (381)
358 KOG1008 Uncharacterized conser 97.9 4.7E-06 1E-10 88.7 1.3 196 99-298 56-272 (783)
359 PF03178 CPSF_A: CPSF A subuni 97.8 0.0086 1.9E-07 63.8 25.6 212 79-297 2-261 (321)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.066 1.4E-06 60.7 33.6 191 27-222 69-338 (527)
361 COG3391 Uncharacterized conser 97.8 0.059 1.3E-06 58.7 31.4 251 39-297 13-279 (381)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.021 4.5E-07 64.8 28.1 237 28-270 121-501 (527)
363 PF00780 CNH: CNH domain; Int 97.7 0.065 1.4E-06 55.7 29.3 138 154-299 6-164 (275)
364 PF03178 CPSF_A: CPSF A subuni 97.7 0.036 7.9E-07 59.0 27.3 211 37-256 2-262 (321)
365 PF08553 VID27: VID27 cytoplas 97.6 0.0055 1.2E-07 70.6 21.1 143 154-298 492-645 (794)
366 KOG4640 Anaphase-promoting com 97.6 0.00028 6E-09 75.8 9.6 93 15-108 20-114 (665)
367 KOG4640 Anaphase-promoting com 97.6 0.00028 6.1E-09 75.8 9.5 95 57-152 20-115 (665)
368 KOG2280 Vacuolar assembly/sort 97.6 0.21 4.6E-06 55.8 32.9 121 647-778 445-576 (829)
369 PF14870 PSII_BNR: Photosynthe 97.5 0.14 3.1E-06 52.7 31.8 270 99-415 16-301 (302)
370 PF02897 Peptidase_S9_N: Proly 97.5 0.11 2.3E-06 57.8 30.0 222 60-286 126-385 (414)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.047 1E-06 58.7 25.3 89 20-109 6-118 (415)
372 COG3386 Gluconolactonase [Carb 97.5 0.042 9.1E-07 57.0 24.2 218 21-248 30-274 (307)
373 KOG1897 Damage-specific DNA bi 97.5 0.32 6.8E-06 56.1 43.2 403 58-493 488-943 (1096)
374 KOG1897 Damage-specific DNA bi 97.5 0.35 7.5E-06 55.8 44.6 173 80-257 471-657 (1096)
375 PRK13616 lipoprotein LpqB; Pro 97.4 0.0089 1.9E-07 68.1 19.2 184 16-213 350-564 (591)
376 PF14870 PSII_BNR: Photosynthe 97.3 0.25 5.3E-06 51.0 30.4 230 56-297 15-257 (302)
377 PF15390 DUF4613: Domain of un 97.3 0.19 4.1E-06 54.7 25.5 152 15-174 19-187 (671)
378 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.043 9.3E-07 46.1 16.0 102 188-297 2-110 (111)
379 COG3204 Uncharacterized protei 97.2 0.072 1.6E-06 52.8 19.8 165 11-175 81-265 (316)
380 KOG4499 Ca2+-binding protein R 97.2 0.11 2.4E-06 49.4 20.0 214 27-246 27-271 (310)
381 KOG2079 Vacuolar assembly/sort 97.2 0.0079 1.7E-07 69.1 15.0 110 59-172 89-202 (1206)
382 KOG2395 Protein involved in va 97.1 0.03 6.5E-07 59.5 17.8 141 154-297 344-497 (644)
383 PRK13616 lipoprotein LpqB; Pro 97.1 0.049 1.1E-06 62.2 21.3 184 58-255 350-564 (591)
384 PF14783 BBS2_Mid: Ciliary BBS 97.1 0.027 5.8E-07 47.4 14.0 100 18-124 2-109 (111)
385 PHA02713 hypothetical protein; 97.1 0.026 5.6E-07 64.7 19.1 217 38-263 273-537 (557)
386 PRK10115 protease 2; Provision 97.1 0.99 2.2E-05 53.2 34.9 237 17-262 128-397 (686)
387 COG3386 Gluconolactonase [Carb 97.1 0.17 3.7E-06 52.6 22.7 220 64-291 31-275 (307)
388 COG3490 Uncharacterized protei 97.0 0.27 5.9E-06 48.3 21.4 241 146-416 71-346 (366)
389 COG3204 Uncharacterized protei 97.0 0.17 3.7E-06 50.2 20.1 188 54-244 82-298 (316)
390 PF05096 Glu_cyclase_2: Glutam 97.0 0.42 9E-06 47.6 23.0 180 18-205 47-249 (264)
391 PF05694 SBP56: 56kDa selenium 96.9 0.76 1.7E-05 48.9 29.4 192 68-261 86-344 (461)
392 smart00320 WD40 WD40 repeats. 96.9 0.0029 6.4E-08 42.0 5.8 39 89-127 2-40 (40)
393 KOG2079 Vacuolar assembly/sort 96.9 0.013 2.8E-07 67.4 13.6 100 26-128 98-202 (1206)
394 PRK13684 Ycf48-like protein; P 96.9 0.8 1.7E-05 48.8 28.7 225 57-297 45-284 (334)
395 COG3490 Uncharacterized protei 96.9 0.52 1.1E-05 46.5 24.1 230 59-298 69-345 (366)
396 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.91 2E-05 49.2 33.8 271 27-306 37-366 (418)
397 smart00320 WD40 WD40 repeats. 96.9 0.003 6.5E-08 42.0 5.6 39 47-85 2-40 (40)
398 PF08553 VID27: VID27 cytoplas 96.8 0.029 6.2E-07 64.9 15.7 135 119-258 502-646 (794)
399 KOG0985 Vesicle coat protein c 96.8 0.0086 1.9E-07 68.1 11.1 114 651-764 1087-1248(1666)
400 KOG2444 WD40 repeat protein [G 96.8 0.0016 3.4E-08 61.5 4.6 141 114-259 33-177 (238)
401 KOG4441 Proteins containing BT 96.8 0.11 2.3E-06 59.5 20.1 230 24-262 282-549 (571)
402 KOG4499 Ca2+-binding protein R 96.7 0.62 1.3E-05 44.5 22.1 207 70-282 28-264 (310)
403 PF15390 DUF4613: Domain of un 96.7 1.4 3E-05 48.3 26.9 150 58-217 20-186 (671)
404 PF14727 PHTB1_N: PTHB1 N-term 96.7 1.3 2.8E-05 48.0 29.4 146 111-258 37-203 (418)
405 TIGR03074 PQQ_membr_DH membran 96.7 0.63 1.4E-05 54.9 25.6 230 27-268 194-486 (764)
406 PF13429 TPR_15: Tetratricopep 96.7 0.0032 7E-08 65.7 6.4 138 646-822 117-274 (280)
407 PRK10115 protease 2; Provision 96.6 2 4.4E-05 50.7 29.9 195 59-258 128-343 (686)
408 KOG1898 Splicing factor 3b, su 96.6 2.2 4.7E-05 50.0 31.2 100 27-126 549-668 (1205)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.56 1.2E-05 50.6 22.6 84 142-226 307-407 (415)
410 COG3292 Predicted periplasmic 96.5 0.27 5.9E-06 53.2 19.2 272 15-297 164-443 (671)
411 PHA02713 hypothetical protein; 96.4 0.28 6E-06 56.4 20.8 203 80-293 273-523 (557)
412 KOG2444 WD40 repeat protein [G 96.4 0.0034 7.5E-08 59.3 4.3 111 72-185 33-144 (238)
413 KOG4441 Proteins containing BT 96.4 0.19 4.1E-06 57.5 19.2 222 67-297 283-537 (571)
414 PF07995 GSDH: Glucose / Sorbo 96.4 1.2 2.6E-05 47.5 23.9 234 17-254 3-330 (331)
415 KOG2247 WD40 repeat-containing 96.4 0.00072 1.6E-08 70.5 -0.5 278 14-301 33-368 (615)
416 PF05694 SBP56: 56kDa selenium 96.3 1.7 3.6E-05 46.4 23.5 211 154-384 86-344 (461)
417 PF05096 Glu_cyclase_2: Glutam 96.3 1.3 2.9E-05 44.1 26.5 194 90-291 34-250 (264)
418 PF10647 Gmad1: Lipoprotein Lp 96.3 0.83 1.8E-05 46.5 21.2 145 17-165 25-187 (253)
419 KOG2395 Protein involved in va 96.3 0.075 1.6E-06 56.6 13.2 144 68-217 344-500 (644)
420 PLN03081 pentatricopeptide (PP 96.2 0.036 7.9E-07 66.2 12.5 104 647-750 267-387 (697)
421 TIGR00990 3a0801s09 mitochondr 96.2 0.023 5E-07 66.7 10.3 129 620-748 335-492 (615)
422 KOG2247 WD40 repeat-containing 96.1 0.0016 3.5E-08 68.0 0.3 128 669-825 4-131 (615)
423 PRK13684 Ycf48-like protein; P 96.1 2.5 5.5E-05 45.0 27.7 269 15-298 45-328 (334)
424 KOG2280 Vacuolar assembly/sort 96.0 0.56 1.2E-05 52.6 19.0 201 77-283 62-271 (829)
425 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.2E-07 39.6 5.6 34 15-49 11-44 (47)
426 KOG3630 Nuclear pore complex, 96.0 0.3 6.5E-06 57.1 17.1 143 101-246 102-260 (1405)
427 PF12894 Apc4_WD40: Anaphase-p 95.9 0.027 5.8E-07 39.4 5.4 34 57-91 11-44 (47)
428 TIGR03118 PEPCTERM_chp_1 conse 95.8 2.4 5.2E-05 42.8 24.9 221 60-281 25-307 (336)
429 PLN03081 pentatricopeptide (PP 95.8 0.14 3.1E-06 61.2 15.1 49 647-695 368-418 (697)
430 KOG2076 RNA polymerase III tra 95.6 0.068 1.5E-06 60.9 10.1 102 653-762 153-267 (895)
431 PHA03098 kelch-like protein; P 95.5 0.66 1.4E-05 53.5 18.3 146 27-176 295-467 (534)
432 PHA03098 kelch-like protein; P 95.4 0.51 1.1E-05 54.5 17.0 188 66-262 292-514 (534)
433 PLN03218 maturation of RBCL 1; 95.3 0.21 4.5E-06 61.4 14.0 102 648-749 516-640 (1060)
434 PLN03218 maturation of RBCL 1; 95.3 0.1 2.2E-06 64.0 11.1 131 620-750 511-676 (1060)
435 PLN03077 Protein ECB2; Provisi 95.2 0.1 2.2E-06 64.2 11.2 105 647-751 331-452 (857)
436 PF14938 SNAP: Soluble NSF att 95.2 0.058 1.3E-06 56.1 7.7 104 654-779 30-143 (282)
437 COG1520 FOG: WD40-like repeat 95.1 6.1 0.00013 43.0 30.5 192 30-228 71-279 (370)
438 TIGR03074 PQQ_membr_DH membran 95.1 5.4 0.00012 47.3 24.1 114 155-269 194-354 (764)
439 KOG0550 Molecular chaperone (D 95.1 0.031 6.8E-07 57.7 5.0 155 668-827 249-432 (486)
440 TIGR00990 3a0801s09 mitochondr 94.9 0.27 5.8E-06 57.9 13.1 44 651-694 445-493 (615)
441 PF10647 Gmad1: Lipoprotein Lp 94.9 5 0.00011 40.8 22.2 142 59-206 25-184 (253)
442 TIGR03118 PEPCTERM_chp_1 conse 94.7 5.4 0.00012 40.4 24.4 218 18-239 25-307 (336)
443 PF10168 Nup88: Nuclear pore c 94.6 9.5 0.00021 44.9 24.1 94 143-262 85-182 (717)
444 KOG4626 O-linked N-acetylgluco 94.6 0.15 3.2E-06 55.6 8.6 50 648-697 193-247 (966)
445 PHA02790 Kelch-like protein; P 94.5 1.6 3.4E-05 49.3 17.6 182 68-261 271-472 (480)
446 PRK15174 Vi polysaccharide exp 94.5 0.3 6.5E-06 57.5 12.1 101 647-747 118-236 (656)
447 PHA02790 Kelch-like protein; P 94.4 1.7 3.7E-05 49.1 17.5 143 27-176 272-426 (480)
448 KOG2003 TPR repeat-containing 94.4 0.34 7.3E-06 50.6 10.4 169 590-758 421-648 (840)
449 KOG1155 Anaphase-promoting com 94.4 0.19 4E-06 53.0 8.6 60 665-735 429-491 (559)
450 COG3063 PilF Tfp pilus assembl 94.4 0.46 1E-05 45.6 10.4 107 653-764 56-185 (250)
451 PF10602 RPN7: 26S proteasome 94.3 0.21 4.5E-06 47.4 8.4 99 652-750 16-140 (177)
452 KOG3630 Nuclear pore complex, 94.2 0.46 1E-05 55.6 11.9 141 144-288 102-260 (1405)
453 KOG2076 RNA polymerase III tra 94.2 0.12 2.6E-06 58.9 7.3 77 651-735 185-266 (895)
454 PF10168 Nup88: Nuclear pore c 94.1 13 0.00027 43.9 23.8 80 59-138 86-188 (717)
455 PRK10370 formate-dependent nit 94.1 0.49 1.1E-05 46.0 10.8 97 652-748 52-169 (198)
456 PLN03077 Protein ECB2; Provisi 94.0 0.31 6.7E-06 59.9 11.5 155 601-763 537-718 (857)
457 TIGR02604 Piru_Ver_Nterm putat 94.0 2.1 4.6E-05 46.4 16.6 140 16-161 14-201 (367)
458 KOG1916 Nuclear protein, conta 93.9 0.048 1.1E-06 61.5 3.6 115 10-127 127-263 (1283)
459 PRK11788 tetratricopeptide rep 93.7 0.56 1.2E-05 51.6 11.9 102 648-749 150-275 (389)
460 PRK11447 cellulose synthase su 93.7 0.78 1.7E-05 58.3 14.4 102 649-750 583-698 (1157)
461 PRK15363 pathogenicity island 93.7 0.81 1.8E-05 41.6 10.4 107 620-747 11-127 (157)
462 PRK11788 tetratricopeptide rep 93.6 0.3 6.5E-06 53.8 9.6 130 620-749 73-240 (389)
463 KOG1983 Tomosyn and related SN 93.6 4.3 9.4E-05 49.7 19.6 230 16-263 36-268 (993)
464 TIGR02604 Piru_Ver_Nterm putat 93.6 13 0.00028 40.4 23.1 141 58-204 14-200 (367)
465 COG3292 Predicted periplasmic 93.6 7.8 0.00017 42.6 18.9 149 57-215 164-316 (671)
466 KOG2377 Uncharacterized conser 93.5 2.1 4.5E-05 45.2 14.1 129 68-199 32-167 (657)
467 smart00036 CNH Domain found in 93.4 11 0.00025 39.4 29.3 232 26-269 12-280 (302)
468 KOG4626 O-linked N-acetylgluco 93.4 1.2 2.7E-05 48.8 12.8 50 647-696 294-348 (966)
469 PF12234 Rav1p_C: RAVE protein 93.3 2.6 5.6E-05 48.0 15.8 102 155-258 41-155 (631)
470 PRK15174 Vi polysaccharide exp 93.3 1.4 3E-05 52.1 14.6 100 649-748 222-343 (656)
471 PF12895 Apc3: Anaphase-promot 93.3 0.15 3.2E-06 41.6 4.8 75 652-748 2-83 (84)
472 KOG2377 Uncharacterized conser 93.3 1.2 2.6E-05 46.9 12.0 140 19-162 26-172 (657)
473 TIGR02917 PEP_TPR_lipo putativ 93.2 0.67 1.4E-05 57.6 12.8 129 620-748 639-795 (899)
474 COG3823 Glutamine cyclotransfe 93.2 4.4 9.6E-05 38.3 14.3 174 26-205 55-247 (262)
475 PF07995 GSDH: Glucose / Sorbo 93.1 14 0.0003 39.3 29.4 232 59-296 3-330 (331)
476 PRK15359 type III secretion sy 93.0 0.5 1.1E-05 43.3 8.3 78 650-748 35-117 (144)
477 PF14781 BBS2_N: Ciliary BBSom 93.0 4.9 0.00011 35.3 13.5 118 104-225 3-133 (136)
478 KOG3060 Uncharacterized conser 92.9 0.52 1.1E-05 45.8 8.2 100 596-695 60-181 (289)
479 COG5276 Uncharacterized conser 92.8 12 0.00025 37.6 28.6 192 18-218 89-286 (370)
480 TIGR02521 type_IV_pilW type IV 92.5 1.4 3.1E-05 43.8 11.9 48 648-695 74-126 (234)
481 PF12234 Rav1p_C: RAVE protein 92.4 4.5 9.7E-05 46.2 16.1 111 59-172 31-155 (631)
482 PF10433 MMS1_N: Mono-function 92.3 25 0.00054 40.2 38.3 283 15-300 43-388 (504)
483 TIGR02917 PEP_TPR_lipo putativ 92.1 1.3 2.8E-05 55.0 13.2 75 620-694 537-627 (899)
484 KOG1898 Splicing factor 3b, su 92.0 32 0.0007 41.0 30.9 70 15-84 582-668 (1205)
485 PRK09782 bacteriophage N4 rece 91.9 2.7 5.9E-05 51.5 14.8 46 651-696 521-570 (987)
486 PF13429 TPR_15: Tetratricopep 91.9 0.025 5.4E-07 59.0 -2.0 49 647-695 16-71 (280)
487 KOG0553 TPR repeat-containing 91.9 0.21 4.5E-06 49.9 4.4 80 623-702 95-183 (304)
488 PF13432 TPR_16: Tetratricopep 91.8 0.24 5.2E-06 37.9 3.9 46 649-694 7-57 (65)
489 PF10313 DUF2415: Uncharacteri 91.7 0.79 1.7E-05 31.1 5.6 31 16-46 1-34 (43)
490 PRK10747 putative protoheme IX 91.7 0.77 1.7E-05 50.5 9.2 100 596-695 92-214 (398)
491 PF13176 TPR_7: Tetratricopept 91.5 0.25 5.3E-06 32.4 3.1 23 671-693 2-24 (36)
492 PRK15359 type III secretion sy 91.3 2.1 4.6E-05 39.1 10.3 92 659-759 16-115 (144)
493 PRK15331 chaperone protein Sic 91.3 0.79 1.7E-05 41.9 7.1 78 650-748 48-130 (165)
494 KOG2047 mRNA splicing factor [ 91.3 1.9 4.2E-05 47.7 11.1 208 610-823 128-414 (835)
495 PF11725 AvrE: Pathogenicity f 91.3 22 0.00047 44.7 20.7 149 14-174 361-517 (1774)
496 PRK11447 cellulose synthase su 91.1 1.8 3.9E-05 55.1 12.9 73 623-695 580-664 (1157)
497 PRK09782 bacteriophage N4 rece 91.1 1.8 4E-05 52.9 12.3 42 653-694 590-635 (987)
498 COG5010 TadD Flp pilus assembl 91.1 1.5 3.3E-05 43.0 9.3 77 649-725 110-199 (257)
499 PRK11189 lipoprotein NlpI; Pro 91.1 1.4 3E-05 46.2 10.0 45 651-695 76-125 (296)
500 PF14559 TPR_19: Tetratricopep 90.9 0.37 8E-06 37.2 4.2 46 650-695 2-52 (68)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-148 Score=1125.11 Aligned_cols=793 Identities=67% Similarity=1.169 Sum_probs=781.6
Q ss_pred CcchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEE
Q 002511 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (914)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (914)
+++++++++..|+++|.+++|||..+|++++.++|.|.|||++++.++++|...+.||++..|.+..+|+++|++|+.|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
||+++|+++++.|.+|++.|+|++.||..++++++|+|.+|++||++.++.+.+++.+|.+.|++++|+|+|.+.|++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCC
Q 002511 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 242 (914)
.|++|++|.+.+..+.+++.+|..+|+|+++.+.|++|||++|++|.+++|||+++..|++++.+|..+|+.++|+|.-+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcE
Q 002511 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (914)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (914)
++++|++||+|+||+..|+++..++....+++|+++-.+.++.+++|.++|.+.+.++++.|.++|+.+|+++|+.++++
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei 320 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEI 320 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccccCceeEEEEecC-C
Q 002511 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSD-G 401 (914)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~-~ 401 (914)
+..++++.....++.||+++++..++++.++.+|+.+++||+|+++++|+||+++||+...||++.+|....++|++| +
T Consensus 321 ~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsn 400 (794)
T KOG0276|consen 321 QAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSN 400 (794)
T ss_pred eeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCC
Confidence 999999998888899999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEecCCeEEEeccCcccceeeecCcccceeecCcEEEEEeCCeEEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEE
Q 002511 402 EYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 481 (914)
Q Consensus 402 ~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~ 481 (914)
.|++..+++.|+++ .+|++++++++.++.+.|+||.+|++.+++.++||||++++++++++...++++|+.+|.+|+++
T Consensus 401 e~avRes~~~vki~-knfke~ksi~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 401 EFAVRESNGNVKIF-KNFKEHKSIRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIA 479 (794)
T ss_pred eEEEEecCCceEEE-ecceeccccccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEecCCCEEEEE
Confidence 88999899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCEEEEEccCCeEEEEECCEEeEEEecccc
Q 002511 482 SDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRP 561 (914)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 561 (914)
+++..+++.+|++.+....+.+..++++|.+++|+.+.+..+.++++.|.+|||||+|..++++|+++++..++.+++.+
T Consensus 480 ~d~Sfyil~~n~d~v~~a~e~g~~v~eeGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~ 559 (794)
T KOG0276|consen 480 GDDSFYILKFNADAVANAVEQGIEVTEEGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRI 559 (794)
T ss_pred ecCceeEEEecHHHHHHHHhcCCCCcchhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccC
Q 002511 562 MYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATD 641 (914)
Q Consensus 562 ~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~ 641 (914)
+|+++|+++++|+|+.|++.++.+|.+.+++++||+++|++|++.|.++|++|+..+++++++|++++|++++||++++|
T Consensus 560 mylLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D 639 (794)
T KOG0276|consen 560 MYLLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD 639 (794)
T ss_pred hhheeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHH
Q 002511 642 PDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAK 721 (914)
Q Consensus 642 ~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~ 721 (914)
|+++|++++++|+++.|+++|.+.+++.+|++||++|++.+++.+|.+||.+++|+.+|+++|+..|+.+++..++..+.
T Consensus 640 ~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 640 PDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcChhhhhhcCCCccCC
Q 002511 722 EQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYS 796 (914)
Q Consensus 722 ~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~ 796 (914)
.+|++|.||.|+++.|++++|++++++++|++||++|||+|+|+++++++.+|++.|.+.++|+|++|+||++|+
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k~~~sladp~~~~ 794 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEKAAESLADPEEYS 794 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhhhhhhccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-83 Score=674.56 Aligned_cols=765 Identities=27% Similarity=0.509 Sum_probs=649.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
..+|...+.+|..++|||..+|++++..+|.|++||++-+.++..|..|++||+.+.|+|++.++++|++|-.|+||+++
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
+.+++.++.+|-+.|+.+.|++.-+.|+++|+|.+|+||++.++ .+..++.+|.++|+|..|+| ...+++++|.|.+|
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTV 159 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEecCceEEEeeccCC-ccceEEEecccceE
Confidence 99999999999999999999999999999999999999999998 89999999999999999999 78999999999999
Q ss_pred EEEECCCCC-----------------------------CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 168 KIWNLGSPD-----------------------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 168 ~vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
++||+..-+ ....+.+|..+|+.++|+|.-. +|++|++|+.|++|.+..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc--eEEecCCcceeeEEEecc
Confidence 999985311 1245679999999999998655 899999999999999875
Q ss_pred Cc--eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 219 KS--CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 219 ~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
.+ .+.+..+|.++|+++-|+|...++++.|+|++|++||+...+.+.++....++.|.++.+|..+.+++|.++|.+.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V 317 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV 317 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE
Confidence 44 3567789999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---C
Q 002511 297 VKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---D 373 (914)
Q Consensus 297 i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---~ 373 (914)
+.+.+++|.++++.+ .+++.+...++.+++... .......++..+..-..+.+++++|....+.+|+ +
T Consensus 318 FkleRErpa~~v~~n-~LfYvkd~~i~~~d~~t~--------~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 318 FKLERERPAYAVNGN-GLFYVKDRFIRSYDLRTQ--------KDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred EEEcccCceEEEcCC-EEEEEccceEEeeecccc--------ccceeEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 999999999999875 455666888888776432 1112233444455556788999999988888884 6
Q ss_pred CcEEEEEeeccc-------ccccCceeEEEEecCCcEEEEec-CCeEEEeccCcccceeeecCcccceee--cCcEEEEE
Q 002511 374 GEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY--GGTLLAMC 443 (914)
Q Consensus 374 ~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~--~g~~La~~ 443 (914)
+.+.+|.+.... ....++.....|-..+++++... +..+.+-++..+..+.+...-+.+.|+ |...|...
T Consensus 389 ~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~ 468 (1202)
T KOG0292|consen 389 GEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLR 468 (1202)
T ss_pred CeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEEE
Confidence 777777654431 11224445666777777777766 667777766555555555444455555 44467777
Q ss_pred eCCeEEEEeccCCcEEEEEEc-ceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeee
Q 002511 444 SNDFICFYDWAECRLIRRIDV-TVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETN 522 (914)
Q Consensus 444 ~~~~i~~~d~~~~~~i~~~~~-~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 522 (914)
+.+.|.+||++..+.+..+.. .++.+.||+|+.++|..++..+++...+-+ ....++| .
T Consensus 469 ~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~~vAll~Kh~i~i~~kkL~-------------------l~~sihE-t 528 (1202)
T KOG0292|consen 469 SPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMSRVALLSKHTITIADKKLE-------------------LLCSIHE-T 528 (1202)
T ss_pred cCCeEEEEEeecceEEEEEecCceeEEEEcCccchhhhcccceEEEEecchh-------------------heecchh-e
Confidence 788999999999998888884 899999999999999999999988653322 2344555 6
Q ss_pred eEEEeeEEecC-EEEEEccCCeEEEEE-CCEEeEEEecccceEEEEEeecCCEEEEEecCCceEEEEecchhHhHHHHHH
Q 002511 523 ERVRTGLWVGD-CFIYNNSSWRLNYCV-GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM 600 (914)
Q Consensus 523 ~~i~~~~w~~~-~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 600 (914)
.+|+++.|+++ +|||+|. ++|.|.+ +|+.+.+.+++.+.|+.. .+++.+||+++++.+....++.....|..+++
T Consensus 529 iriksgawde~gVfiYtT~-nHikYal~~GD~GIikTLd~~iyitk--v~gn~V~cl~rd~~~~~~~IDptEy~FKlALi 605 (1202)
T KOG0292|consen 529 IRIKSGAWDEDGVFIYTTL-NHIKYALENGDSGIIKTLDKPIYITK--VKGNKVFCLNRDGEIECLTIDPTEYRFKLALL 605 (1202)
T ss_pred eEeeeceeccCceEEEEeh-hhhhhhhccCCcceEEecccceEEEE--eeCCEEEEEecCCCeEEEeechHHHHHHHHHH
Confidence 89999999996 9999998 8999988 899999999999999988 68999999999999999999999999999999
Q ss_pred ccCHHHHhhhcCCCCcchH--HHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHH
Q 002511 601 RGDLERANEILPSIPKEHH--NSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELA 678 (914)
Q Consensus 601 ~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~a 678 (914)
++.+++...+ |+...+ +.+..||+|+|+.+.||++-+|+..+|+++|+.|+++.|++.|++++++..|++||+.|
T Consensus 606 ~k~ydeVl~l---I~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~A 682 (1202)
T KOG0292|consen 606 NKKYDEVLHL---IKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLGEEA 682 (1202)
T ss_pred hhhhHHHHHH---HHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999987666 555555 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHH
Q 002511 679 MSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALM 758 (914)
Q Consensus 679 l~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~ 758 (914)
+.+||.++||.||++.+++++|.+||...|+.+.+.+++++|...++..--++.++|+|+.++-.+++..+++.+.|..-
T Consensus 683 l~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylt 762 (1202)
T KOG0292|consen 683 LRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENGGQLPLAYLT 762 (1202)
T ss_pred HHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHhhhhcChh------hhhhcCCCccCCCccccHHHHHHHHHHHhhc
Q 002511 759 ARSYLPSKVSEIVAIWRKDLQKVNPK------AAESLADPEEYSNLFDDWQVALAVESKAAAT 815 (914)
Q Consensus 759 a~~~~~~~~~~~~~~~~~~L~~~~~~------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (914)
|.+++.+... +.+.+.+...... .|..|..|....-+ .+|.-.-...+.|+.+
T Consensus 763 a~~~G~~~~a---e~l~ee~~~~~~~lP~~~~~a~ll~pP~p~~~l-~nwPLl~~s~~~fe~~ 821 (1202)
T KOG0292|consen 763 AAAHGLEDQA---EKLGEELEKQVPSLPEVDPNASLLQPPVPIMPL-ENWPLLSVSKGTFEGA 821 (1202)
T ss_pred HhhcCcHHHH---HHHHHhhccccCCCCCCCCcccccCCCCccccc-cCCchhhhhhhhhhHh
Confidence 9999875433 3345555443222 34444444332222 2555433445555544
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=1.4e-68 Score=569.87 Aligned_cols=433 Identities=59% Similarity=1.051 Sum_probs=358.4
Q ss_pred CcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccccCceeEEEEec
Q 002511 320 NEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSS 399 (914)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~ 399 (914)
++++++++++... +.||+.+++..++++.+..+|+.++++|+|++++++++|.+.+|+...++++.+|....++|++
T Consensus 2 ~~i~~~~~~~~~~---~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~ 78 (443)
T PF04053_consen 2 NEIRTANLKNISE---IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSS 78 (443)
T ss_dssp TEEEEEE--S--------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-T
T ss_pred CceEEEECcCCCc---cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEec
Confidence 5677778776654 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCeEEEeccCcccce--eeecCcccceeecCcEEEEEeCCeEEEEeccCCcEEEEEEcc-eeEEEEcCCCC
Q 002511 400 DGEYAVRESSSKIKIFSKNFQEKR--SVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVT-VKNLYWADSGD 476 (914)
Q Consensus 400 ~~~~l~~~~~~~i~v~~~~~~~~~--~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~~-i~~v~~s~dg~ 476 (914)
+++|++..++++|.|+ .+++... .+..+++.+.|++|.+|++.+++.|++|||++++.+++++.. |+.|.||++|+
T Consensus 79 ~n~yAv~~~~~~I~I~-kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~ 157 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIY-KNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGE 157 (443)
T ss_dssp SSEEEEE-TTS-EEEE-ETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSS
T ss_pred CccEEEEECCCeEEEE-EcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCC
Confidence 9999999989999997 5565555 677788999999999999999999999999999999999975 79999999999
Q ss_pred EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCEEEEEccCCeEEEEECCEEeEEE
Q 002511 477 LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMF 556 (914)
Q Consensus 477 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~ 556 (914)
+||+.+++.++++.++.+.+.. .+++|.+++|..++|+..+|++++|++++|+|+|.+ +++|+++|+.+++.
T Consensus 158 ~val~t~~~i~il~~~~~~~~~-------~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~~Ge~~~i~ 229 (443)
T PF04053_consen 158 LVALVTKDSIYILKYNLEAVAA-------IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLVNGETGIIA 229 (443)
T ss_dssp EEEEE-S-SEEEEEE-HHHHHH-------BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEETTEEEEEE
T ss_pred EEEEEeCCeEEEEEecchhccc-------ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEEcCCcceEE
Confidence 9999999999999999988776 677899999999999999999999999999999996 99999999999999
Q ss_pred ecccceEEEEEeecCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHH------HhhhcCCCCcchHHHHHHHHHhCC
Q 002511 557 HLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLER------ANEILPSIPKEHHNSVARFLESRG 630 (914)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~l~~i~~~~~~~~~~~~~~~~ 630 (914)
+++.++|++++.++.+++|++|+++++.+|.+++.+++|++++++++++. +..++|+||.++++++++||+++|
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G 309 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKG 309 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999 588999999999999999999999
Q ss_pred ChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH
Q 002511 631 MIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA 710 (914)
Q Consensus 631 ~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~ 710 (914)
+++.|+++++||+++|++++++|+++.|+++|++++++.+|++||+.||.+|++++|++||.+++|+++|++||...|+.
T Consensus 310 ~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 310 YPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp -HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred CHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC
Q 002511 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP 764 (914)
Q Consensus 711 ~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~ 764 (914)
+.+.+++++|...|+++.||++++++||+++|++++++++|+++|+.+||+|+|
T Consensus 390 ~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 390 EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999986
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-49 Score=378.10 Aligned_cols=329 Identities=24% Similarity=0.367 Sum_probs=295.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
...+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||++||+|+.||.|++||.+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeee-EEEecCCCCEEEEEEeC-----CCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 88 TMDKV-KVFEAHTDYIRCVAVHP-----TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 88 t~~~~-~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
+|+++ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+ .+...+.+|+.+|+|+.|- +..++++|
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-~~~~~lsgHT~~VTCvrwG--G~gliySg 264 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-TCVRTLSGHTASVTCVRWG--GEGLIYSG 264 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-eEEEEeccCccceEEEEEc--CCceEEec
Confidence 98775 56899999999999976 4568999999999999999987 8889999999999999997 47899999
Q ss_pred eCCCcEEEEECCCCCCcEEEecCCCCeeEEEEee-----------CCC-----------------------cCEEEEEEc
Q 002511 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFT-----------GGD-----------------------KPYLITGSD 207 (914)
Q Consensus 162 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-----------~~~-----------------------~~~l~~~~~ 207 (914)
+.|++|++|+...|.....+++|...|+.++.+. .+. ...+++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 9999999999999999999999999999998872 121 124999999
Q ss_pred CCeEEEEECCC-CceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEE
Q 002511 208 DHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRI 286 (914)
Q Consensus 208 dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 286 (914)
|.++.+|+... .+++..+.+|..-|..+.||||+++|++++.|.+|++|+.++|+.+.++.+|...|+.++|+.|.+.|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 99999999754 55888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002511 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (914)
Q Consensus 287 ~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (914)
++|+.|.++.+|.-+... -..++++|...+.++.|+|||+
T Consensus 425 VS~SkDsTLKvw~V~tkK----------------------------------------l~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKK----------------------------------------LKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred EEcCCCceEEEEEeeeee----------------------------------------ecccCCCCCceEEEEEecCCCc
Confidence 999999999997322211 1235678888899999999999
Q ss_pred EEEEEc-CCcEEEE
Q 002511 367 FVVVCG-DGEYIIY 379 (914)
Q Consensus 367 ~lav~~-~~~~~i~ 379 (914)
.++.++ |..+.+|
T Consensus 465 rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 465 RVASGGKDKVLRLW 478 (480)
T ss_pred eeecCCCceEEEee
Confidence 999888 5555665
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-43 Score=350.12 Aligned_cols=458 Identities=21% Similarity=0.327 Sum_probs=362.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc--eeEEeeecCCCeEEEEEecCCCEEEEEEC--CCEEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRV 83 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~v 83 (914)
...+..|...++-..|||.|-|+|+|...|+|+|||....+ +..+++...++|..++|++++++|++.+. +...++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45678999999999999999999999999999999976533 33457778899999999999999988765 334444
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
+-+++|..+..+.+|+..|.++.|-|..+ ++++|++|++|.+|.-.-- +....+..|...|.++.|+| |+..|++.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-KFk~s~r~HskFV~~VRysP-DG~~Fat~g 209 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-KFKSSFREHSKFVNCVRYSP-DGSRFATAG 209 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-eeeecccccccceeeEEECC-CCCeEEEec
Confidence 44457888999999999999999999877 5889999999999985544 66677888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCcEEEe---cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE----------------
Q 002511 163 LDRTIKIWNLGSPDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ---------------- 223 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------- 223 (914)
.||+|.+||-.+++.+..+. +|++.|..++|+|++. .+++++.|.+++|||..+.++++
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST--QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc--eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 99999999999999998887 8999999999999998 59999999999999987665443
Q ss_pred ---------------------------EecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEe-ecCCccEE
Q 002511 224 ---------------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-NYGLERVW 275 (914)
Q Consensus 224 ---------------------------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~ 275 (914)
.+.+|...|++++.+|++++|++|+.||.|.-|+..++..-+.. ..|...|.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 34689999999999999999999999999999999988755443 56778899
Q ss_pred EEEEecCCCEEEEEecCCeEEE-------------EcCCCcceeEEcCCC-cEEEEeeCcEEEEEeeecccceeccCCce
Q 002511 276 AIGYMKSSRRIVIGYDEGTIMV-------------KIGREEPVASMDNSG-KIIWAKHNEIQTVNIKSVGADYEVTDGER 341 (914)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~i~i-------------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 341 (914)
+++-+..+.++.+|.+|..-++ .++.++...+...++ .++.....++.+++- ...
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~-----------~~~ 436 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD-----------QTK 436 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec-----------CCc
Confidence 9998876766655555544333 234444455555553 555555666555441 111
Q ss_pred eeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-------ccccCceeEEEEecCCcEEEEec-CCeE
Q 002511 342 LPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-------NRSFGSALEFVWSSDGEYAVRES-SSKI 412 (914)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~-~~~i 412 (914)
+.. ......+.+++++|+++.+|+|+ |+++++|.+.... ..+.+.+++++||||+.|++++. .+++
T Consensus 437 ~~~-----~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 437 VSS-----IPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred cee-----eccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 110 12345678999999999999999 9999999887643 34568899999999999999998 8999
Q ss_pred EEeccCcccceeeec----------CcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEEE----cceeEEEEcCCCCE
Q 002511 413 KIFSKNFQEKRSVRP----------TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID----VTVKNLYWADSGDL 477 (914)
Q Consensus 413 ~v~~~~~~~~~~~~~----------~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~ 477 (914)
.+||+..+......+ +++|+ ..+||+|+-| .|.+|+++.....-.++ ..|..+.|-.+.+.
T Consensus 512 v~yd~~s~~~~~~~w~FHtakI~~~aWsP~----n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tv 587 (603)
T KOG0318|consen 512 VLYDVASREVKTNRWAFHTAKINCVAWSPN----NKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTV 587 (603)
T ss_pred EEEEcccCceecceeeeeeeeEEEEEeCCC----ceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceE
Confidence 999977554433332 66777 8999999999 99999998665433333 36999999988665
Q ss_pred EEEEeCCeEEEEE
Q 002511 478 VAIASDTSFYILK 490 (914)
Q Consensus 478 la~~~~~~~~~~~ 490 (914)
+ +.+.|..+.+|
T Consensus 588 v-SsG~Da~iK~W 599 (603)
T KOG0318|consen 588 V-SSGQDANIKVW 599 (603)
T ss_pred E-eccCcceeEEe
Confidence 5 44555555444
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-45 Score=350.79 Aligned_cols=325 Identities=20% Similarity=0.340 Sum_probs=286.6
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
+..++.+|..+|.|+.|+|+|..|++|+.|.++++||+.|..+..+.++|...|.|++|+|||+.|++|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEcc----CCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNP----KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p----~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
.++......+.+|...|++++|.| .....|++++.||+|+|||+..++.+..+.+|..+|+|++|-. ++ +|++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~g-liyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EG-LIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--Cc-eEEe
Confidence 999899999999999999999987 2567899999999999999999999999999999999999943 33 8999
Q ss_pred EEcCCeEEEEECCCCceEEEecCcccceEEEEEe-----------CCCC-------------------------EEEEEE
Q 002511 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----------PELP-------------------------IIITGS 248 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-----------~~~~-------------------------~l~~~~ 248 (914)
|+.|++|++|+...|.+...+++|...|..++.+ |.++ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999999999999999999877 2233 499999
Q ss_pred CCCeEEEEeCCCc-eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEe
Q 002511 249 EDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNI 327 (914)
Q Consensus 249 ~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 327 (914)
.|.++.+|+.... +++....+|..-|..+.||||++++|+++-|..|++|.++... .+.+
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk---------~las---------- 404 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK---------FLAS---------- 404 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc---------hhhh----------
Confidence 9999999997644 4777888899999999999999999999999999998655432 2211
Q ss_pred eecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecccc-----cccCceeEEEEecCC
Q 002511 328 KSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRN-----RSFGSALEFVWSSDG 401 (914)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~-----~~~~~~~~~~~s~~~ 401 (914)
+.+|-..+..++||.|.++|++|+ |.++.+|+++..+. .+...|.++.|+|||
T Consensus 405 ---------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 405 ---------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred ---------------------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC
Confidence 234445667899999999999999 89999999887653 355688999999999
Q ss_pred cEEEEec-CCeEEEec
Q 002511 402 EYAVRES-SSKIKIFS 416 (914)
Q Consensus 402 ~~l~~~~-~~~i~v~~ 416 (914)
+.++++. |.-+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999888 67788883
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=347.99 Aligned_cols=459 Identities=18% Similarity=0.321 Sum_probs=378.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC--------ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ--------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
...+|.|+.|||+|+++|+|. .+.+.||..... ...+++.+|-..|.++.|+.|.++|++|+.|..+++|.
T Consensus 95 fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 357899999999999999987 568999986532 34566778899999999999999999999999999999
Q ss_pred CCCCee--eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----------------------ce-------
Q 002511 86 YNTMDK--VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-----------------------WM------- 133 (914)
Q Consensus 86 ~~t~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~------- 133 (914)
++..+. ...+.+|.++|...-|..+...+++.+.||.+.+|..... ..
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~ 253 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW 253 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE
Confidence 987666 5667899999999999999999999999999999987610 01
Q ss_pred -E--EEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC-C
Q 002511 134 -C--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD-H 209 (914)
Q Consensus 134 -~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g 209 (914)
. ...+......+++.+|++ ..+.|++|-..|...+|.+.....+..+.-...+|..+.|+..|+ +|+.|+.. |
T Consensus 254 ~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGD--WiA~g~~klg 330 (893)
T KOG0291|consen 254 YKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGD--WIAFGCSKLG 330 (893)
T ss_pred EEEEeeeecccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCC--EEEEcCCccc
Confidence 0 111223346799999999 899999999999999999999999999988889999999998888 78888765 8
Q ss_pred eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEE
Q 002511 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (914)
.+-+|+.++...+...++|...+++++++|||+++++|++||.|++||...+-+..++..|...|+.+.|+..|+.+++.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEcCCC----------cc----eeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccC
Q 002511 290 YDEGTIMVKIGRE----------EP----VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLY 355 (914)
Q Consensus 290 ~~dg~i~i~~~~~----------~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 355 (914)
+-||+|+.|.... .| -.+.++.|.++.+...+..-+-+ |++++|+.+-+ +.+|+.+
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv------WS~qTGqllDi----LsGHEgP 480 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV------WSVQTGQLLDI----LSGHEGP 480 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE------EEeecCeeeeh----hcCCCCc
Confidence 9999999985322 11 34567788888887666554443 66788887754 6899999
Q ss_pred CceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccccCceeEEEEecCCcEEEEec-CCeEEEeccCccc-------
Q 002511 356 PQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQE------- 421 (914)
Q Consensus 356 ~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~------- 421 (914)
|.+++|+|+|..|++++ |.++.+|++.... ......++.++|+|+|+-+++.+ +|.|.+||.+...
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 99999999999999999 9999999886542 23446789999999998777777 9999999933100
Q ss_pred c---------------------eee-ecCcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEEE---------------
Q 002511 422 K---------------------RSV-RPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID--------------- 463 (914)
Q Consensus 422 ~---------------------~~~-~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~--------------- 463 (914)
. +.+ ...+|+| |..+.+++.. .|++||+.++-+++++.
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD----G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln 636 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSAD----GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLN 636 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcCC----CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhc
Confidence 0 011 1156676 7666666555 99999998876554321
Q ss_pred --------------------------------------------cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 464 --------------------------------------------VTVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 464 --------------------------------------------~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
..|..+.|||+|+.+|+++..++.++.
T Consensus 637 ~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYs 707 (893)
T KOG0291|consen 637 RRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYS 707 (893)
T ss_pred cccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEe
Confidence 136678999999999999999988854
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-43 Score=347.79 Aligned_cols=284 Identities=25% Similarity=0.364 Sum_probs=272.9
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC--CCEEEEEECCCEEEEEECCCC
Q 002511 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR--KQWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~vwd~~t~ 89 (914)
.|-+.+|..+.||+|+..|+||+-+|.++||+..+...+.+|.+|...|.++.|+|. +..+|+|+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356789999999999999999999999999999999999999999999999999997 568999999999999999998
Q ss_pred eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEE
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (914)
.++..+.+|...|..++|+|+|++|++++.|.+-++||++++ .......+|...|.+++|+| ||.++++|+.|..-+|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRV 329 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc-hhhHhhcccccccceeEecC-CCceeeccCccchhhe
Confidence 999999999999999999999999999999999999999998 55666789999999999999 9999999999999999
Q ss_pred EECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeC-CCCEEEEEE
Q 002511 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIIITGS 248 (914)
Q Consensus 170 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~ 248 (914)
||++++.++..+.+|.++|..+.|+|+|- .+++|+.|++++|||++..+.+.++.+|.+-|+.++|+| .|.+|++++
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy--~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGY--HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCce--EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999999999999999997 699999999999999999999999999999999999999 788999999
Q ss_pred CCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
.|++++||...++.++.++.+|.+.|.++..+++++.+++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999984
No 9
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=9e-42 Score=350.28 Aligned_cols=655 Identities=14% Similarity=0.176 Sum_probs=428.6
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t 88 (914)
+....| .|..++|-|||..|+.+. +..+.|||...|...+++++|...|.|++|+.||+.+++|+.|..|.+|+.+-
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred hccccc--chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 333445 799999999999888875 56799999999999999999999999999999999999999999999998643
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
.. +.. -.|.+.|.|+.|+|-...|++|+-+ ..-+|..+...... ......+.+++|+. |+.+|+.|-.+|+|.
T Consensus 85 EG-~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~R~~~CsWtn-DGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 85 EG-ILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSSRIICCSWTN-DGQYLALGMFNGTIS 157 (1081)
T ss_pred cc-eee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhheeEEEeeecC-CCcEEEEeccCceEE
Confidence 22 222 2599999999999999999998874 46789876542211 12346789999998 999999999999999
Q ss_pred EEECCCCCCcEEEe---cCCCCeeEEEEeeCC---CcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCC
Q 002511 169 IWNLGSPDPNFTLD---AHQKGVNCVDYFTGG---DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (914)
Q Consensus 169 vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 242 (914)
+-+- ++++...+. +...+|.+++|+|.. ....+++.....++.++.+. |+.+..-+.-.-...|+.+.|+|.
T Consensus 158 iRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 158 IRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred eecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc
Confidence 9864 444444443 367899999999864 23478888888999998876 655554343444567899999999
Q ss_pred EEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcE
Q 002511 243 IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEI 322 (914)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (914)
+++.|+.|+.+++|. +.|-.+.++......||+++..|+++.+++|+.||++..+..-...+.+++.+......+..++
T Consensus 236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDV 314 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDV 314 (1081)
T ss_pred EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHH
Confidence 999999999999998 5577888887777899999999999999999999999886544444444443322222222221
Q ss_pred EEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccccC-----ce-eEEE
Q 002511 323 QTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFG-----SA-LEFV 396 (914)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~-----~~-~~~~ 396 (914)
.+. .+..++.+.+..+|+ +..++.-. ..||+--..++.+|.....+..... .+ ..+.
T Consensus 315 ivQ---------hLi~~qkvrIkC~DL------VkKiaiYr--nrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~ 377 (1081)
T KOG1538|consen 315 IVQ---------HLITEQKVRIKCKDL------VKKIAIYR--NRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFE 377 (1081)
T ss_pred HHH---------HHhhcceeeeeHHHH------HHHHHhhh--hhheecccceEEEEeccccccccchhHHHHHHHhhcc
Confidence 111 133445555444443 22333333 3477777788888877655432211 11 1111
Q ss_pred Ee---cCCcEEEEecCCeEEEeccCcccceee---------ecCcccceeecCcEEEEEeCC--eEEEEeccCCc--EEE
Q 002511 397 WS---SDGEYAVRESSSKIKIFSKNFQEKRSV---------RPTFSAERIYGGTLLAMCSND--FICFYDWAECR--LIR 460 (914)
Q Consensus 397 ~s---~~~~~l~~~~~~~i~v~~~~~~~~~~~---------~~~~s~~~i~~g~~La~~~~~--~i~~~d~~~~~--~i~ 460 (914)
+| -.+..++...+.++.-+|...-..+.. +..-.|- +..-|.+|..+ ..++| +.+.- ++.
T Consensus 378 cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GGP~---gREgL~vGlknGqV~kiF-~dN~~PiLl~ 453 (1081)
T KOG1538|consen 378 CSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGGPP---GREGLLVGLKNGQVLKIF-VDNLFPILLL 453 (1081)
T ss_pred ceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcCCC---CcceeEEEecCCcEEEEE-ecCCchhhee
Confidence 11 234455555566666665332111110 0011111 23466666655 44454 22222 233
Q ss_pred EEEcceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEec---CEEEE
Q 002511 461 RIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVG---DCFIY 537 (914)
Q Consensus 461 ~~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~---~~~i~ 537 (914)
.-...|+++..|.+.+.+|+.++...++|.- +..+ +.+.+ ...+.+..|.. ++|.|
T Consensus 454 ~~~tAvrClDINA~R~kLAvVDD~~~c~v~D--------I~t~------------elL~Q-Epg~nSV~wNT~~E~Mlcf 512 (1081)
T KOG1538|consen 454 KQATAVRCLDINASRKKLAVVDDNDTCLVYD--------IDTK------------ELLFQ-EPGANSVAWNTQCEDMLCF 512 (1081)
T ss_pred cccceeEEeeccCCcceEEEEccCCeEEEEE--------ccCC------------ceEee-cCCCceEEeeccccceEEE
Confidence 3335789999999999999999988887751 1110 12222 34567788875 89999
Q ss_pred EccCCeEEEEECCEEeEEEecccceEEEEEeecCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhcCCCCcc
Q 002511 538 NNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKE 617 (914)
Q Consensus 538 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~ 617 (914)
++. |.++.-.+.....- -+..-+++|| .+++++|+- .|++.. ++.+
T Consensus 513 T~~-g~L~VR~~~~P~h~--qk~~G~VvG~--~gsk~FCL~------~~~i~~-----------------------~evp 558 (1081)
T KOG1538|consen 513 TGG-GYLNVRASTFPVHR--QKLQGFVVGY--NGSKIFCLH------VFSISA-----------------------VEVP 558 (1081)
T ss_pred ecC-CceEEEeccCCcch--hcceEEEEEe--cCceEEEEE------eeeeec-----------------------cccc
Confidence 887 77766553333221 2223456775 577888752 222211 1111
Q ss_pred hHHHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002511 618 HHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (914)
Q Consensus 618 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (914)
+...+ .++++-|.+++|+++++.......|+.||..|+...+|++|.++|.|.+|.
T Consensus 559 ~~~~m------------------------~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl 614 (1081)
T KOG1538|consen 559 QSAPM------------------------YQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDL 614 (1081)
T ss_pred ccccc------------------------hhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc
Confidence 11001 334677889999999999999999999999999999999999999999999
Q ss_pred chhHHHHHh-----cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHH
Q 002511 698 SGLLLLYSS-----LGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVA 772 (914)
Q Consensus 698 ~~l~~l~~~-----~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~ 772 (914)
.-|.++-.. .|....-.-+|++..-.|++.+|..+|...|.-.+|++||.++.+++.|-++-.+.-+..-+.++.
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 988874332 222111222344444445555555555555555555555555555554444444444444444443
Q ss_pred HHHH
Q 002511 773 IWRK 776 (914)
Q Consensus 773 ~~~~ 776 (914)
+.++
T Consensus 695 KRA~ 698 (1081)
T KOG1538|consen 695 KRAD 698 (1081)
T ss_pred HHHH
Confidence 3333
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.9e-42 Score=318.50 Aligned_cols=291 Identities=23% Similarity=0.422 Sum_probs=273.4
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
++..++.|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.++.....|..++|+|.|+++|+|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 45667899999999999999999999999999999999999998888889988999999999999999999999999999
Q ss_pred EECCCC------eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCE
Q 002511 84 YNYNTM------DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (914)
Q Consensus 84 wd~~t~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (914)
|++.+. +..+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++++ +..+.+.+|.+.|.++.++|.+++.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCe
Confidence 999865 3456788999999999999865 7999999999999999999 8888999999999999999989999
Q ss_pred EEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC--cccceEEE
Q 002511 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAV 235 (914)
Q Consensus 158 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i 235 (914)
|++|+.|++.++||++.+...+++.+|...|++++|.|+|. -+++|++|++.++||++..+.+..+.. ...+|+++
T Consensus 202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred EEecccccceeeeeccCcceeEeecccccccceEEEccCCC--eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999998 599999999999999999888877763 24579999
Q ss_pred EEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
+||..|++|++|..|..+.+||.-.++....+.+|.++|.++..+|||.-+++|+-|..++||
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-38 Score=317.98 Aligned_cols=426 Identities=17% Similarity=0.259 Sum_probs=341.5
Q ss_pred hcccCCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC
Q 002511 10 KLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t 88 (914)
.+.||+.+|.+++|-|..+ ++++|+.|+.|.+|+-...+...++..|..-|+|+.|+|||.++++.+.||.|.+||=.+
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 4679999999999999988 688999999999999777788888889999999999999999999999999999999999
Q ss_pred CeeeEEEe---cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee-cCc--ccEEEEEEccCCCCEEEEEe
Q 002511 89 MDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHS--HYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 89 ~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~~i~~~~~~p~~~~~l~~~~ 162 (914)
|+.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+. .+.+.+. +.. .....+.|. ...|++.+
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq---kd~lItVS 297 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS 297 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence 99999998 89999999999999999999999999999999998 4555443 322 334455564 56899999
Q ss_pred CCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEe-cCcccceEEEEEeCCC
Q 002511 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPEL 241 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~ 241 (914)
.+|+|.+++...+.+...+.+|.+.|+++..++++. +|++|+.||.|.-|+..++..-+.. ++|...|.+++.+..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCC--EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 999999999999999999999999999999999986 8999999999999999988765443 6799999999998866
Q ss_pred CEEEEEECCCeEEEEeCCCceeEEE--eecCCccEEEEEEecCCCEEEEEecCCeEEEEc---------CCCcceeEEcC
Q 002511 242 PIIITGSEDGTVRIWHATTYRLENT--LNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI---------GREEPVASMDN 310 (914)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~---------~~~~~~~~~~~ 310 (914)
. +++.+.|.++++.++........ +... ....+++..+++..+++.+.++.+.+.. +-..+..++.+
T Consensus 376 ~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 376 E-LFTIGWDDTLRVISLKDNGYTKSEVVKLG-SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred c-EEEEecCCeEEEEecccCcccccceeecC-CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 4 66778888999998754332221 2333 2334888888888888888888777752 23345566777
Q ss_pred CCcEEEEe--eCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc
Q 002511 311 SGKIIWAK--HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR 387 (914)
Q Consensus 311 ~g~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~ 387 (914)
++..+... +..++++.+... .... .-.+..+...++.+++||||.+||+|. .+++++|+......+
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~---------~l~e--e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGD---------ELKE--EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred CCCEEEEecccceEEEEEecCC---------cccc--eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee
Confidence 77776663 344555554332 2111 112356677899999999999999998 899999988765432
Q ss_pred ------ccCceeEEEEecCCcEEEEec-CCeEEEeccCcccceeeecCcccceee-----cCcEEEEEeCC-eEEEEecc
Q 002511 388 ------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIY-----GGTLLAMCSND-FICFYDWA 454 (914)
Q Consensus 388 ------~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~-----~g~~La~~~~~-~i~~~d~~ 454 (914)
+...|.+++|+|+++.+++++ |..|.||+++.+....+....++..+. +...|++.+.| .|++|.+.
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 346889999999999999999 999999998876655333344554443 57788888888 99999864
No 12
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=100.00 E-value=6.7e-39 Score=321.95 Aligned_cols=671 Identities=15% Similarity=0.194 Sum_probs=443.1
Q ss_pred CCCcchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEE-Eec-------CCCEE
Q 002511 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAK-FVA-------RKQWV 72 (914)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~-~s~-------~~~~l 72 (914)
|.++..+-++- .|+..|.|+.|+.+...+.+++ |..+.+|+--+..........+.-|.... .-+ ....|
T Consensus 1 mklk~~~~~k~-r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 1 MKLKTRICKKN-RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred Cccchhhhhcc-ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceE
Confidence 56666665555 6888999999999888666654 66666665444333222222222111111 111 23578
Q ss_pred EEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEcc
Q 002511 73 VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (914)
Q Consensus 73 ~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (914)
+.+++||.+.+.+ +.++..+.+.+|.+.|.+-.|+|+|.-|++++.||.|++|.-. | .+..++.....+|.|++|.|
T Consensus 79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G-MLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 79 LICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G-MLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred EEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c-hHHHHHhhcCceeEEEEECC
Confidence 9999999999998 4577788889999999999999999999999999999999854 3 45555666677899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccce
Q 002511 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV 232 (914)
Q Consensus 153 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 232 (914)
+.++.+++.+ +.+.+=.+.....+...+.|.+-|.++.|++..+ ++++|+.|-..++||-. |..+..-..|..+|
T Consensus 156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc--ceeecCCceeEEeeccc-CcccccCChhccce
Confidence 6556565544 6777777777777888899999999999999887 89999999999999976 88888888899999
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCC
Q 002511 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSG 312 (914)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g 312 (914)
++++|.|+ ..++.+|.+ ++++= ....+.|..++||+||..+++|+..|.+.+-..-+.... ..++
T Consensus 231 TSva~npd-~~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~--~~n~ 295 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLV--SGNL 295 (737)
T ss_pred eeeeeccc-cceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhh--hccc
Confidence 99999999 677777754 55521 223478999999999999999999999987322111111 1122
Q ss_pred cEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccccccCce
Q 002511 313 KIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSA 392 (914)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~~~~~~ 392 (914)
+........+...++.+... ...+.+-..+.++-.-.+|++++..++++|..+.|+....-..
T Consensus 296 ~~t~~~r~~I~vrdV~~~v~-----------------d~LE~p~rv~k~sL~Y~hLvvaTs~qvyiys~knwntpiiidg 358 (737)
T KOG1524|consen 296 KATSKSRKSITVRDVATGVQ-----------------DILEFPQRVVKFSLGYGHLVVATSLQVYIYSEKNWNTPIIIDG 358 (737)
T ss_pred eeEeeccceEEeehhhhhHH-----------------HHhhCccceeeeeeceeEEEEEeccEEEEEecCCccCcEEEec
Confidence 33333333333333322111 0111122345556666789999999999998888764311000
Q ss_pred --eEEEEecCC-cEEEEecCCeEEEeccCcccceeeec------Ccccceee-cCcEEEEEeCC---eEEEEec-cCCcE
Q 002511 393 --LEFVWSSDG-EYAVRESSSKIKIFSKNFQEKRSVRP------TFSAERIY-GGTLLAMCSND---FICFYDW-AECRL 458 (914)
Q Consensus 393 --~~~~~s~~~-~~l~~~~~~~i~v~~~~~~~~~~~~~------~~s~~~i~-~g~~La~~~~~---~i~~~d~-~~~~~ 458 (914)
.....--.+ ++.......+|.+|..+.+.+...+. ..+...+. +...|++..+. .+.+||. .+|+.
T Consensus 359 re~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~ 438 (737)
T KOG1524|consen 359 REDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKR 438 (737)
T ss_pred cccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcc
Confidence 000000111 33444444566666544333222221 01111111 35677777644 8899998 77765
Q ss_pred EEE-----EEcceeEEEEc----CCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeE
Q 002511 459 IRR-----IDVTVKNLYWA----DSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGL 529 (914)
Q Consensus 459 i~~-----~~~~i~~v~~s----~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~ 529 (914)
... .+..|..++.+ ++.+.+++.+..+-+.+-.-+ .+ |.+ +.+..++..+.+..
T Consensus 439 qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvK-----rf---------gke---e~I~KiGTmVhtLa 501 (737)
T KOG1524|consen 439 QGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVK-----RF---------GKE---EEIYKIGTMVHTLA 501 (737)
T ss_pred cCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeeh-----hc---------Cch---hhhhhhhhhhhhhh
Confidence 432 12244444444 455677777766544432100 00 000 11223455666666
Q ss_pred Eec--CEEEEEccCC-eEEEEECCEEe-------EEEe-----cccceEEEEEeecCCEEEEEecCCceEEEEecchhHh
Q 002511 530 WVG--DCFIYNNSSW-RLNYCVGGEVT-------TMFH-----LDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIE 594 (914)
Q Consensus 530 w~~--~~~i~~~~~~-~l~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 594 (914)
|.+ ++++-..+.. .+.||-+.-.. ++.+ +.+...+..| -++.+.+.-.+|.+.-.++ ..
T Consensus 502 wndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsF--vgNqvtirrsdG~LlpisV----~p 575 (737)
T KOG1524|consen 502 WNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSF--VGNQVTIRRSDGALLPISV----NP 575 (737)
T ss_pred hccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeee--eccEEEEEeccCceEeeec----cc
Confidence 766 4444333321 13333211100 1111 1111122222 2444444444443322221 12
Q ss_pred HHHHHHccCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHH
Q 002511 595 YKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQL 674 (914)
Q Consensus 595 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~l 674 (914)
|..-+ --++..++|++|.++|+...+..+|..|
T Consensus 576 y~~iL-----------------------------------------------~e~~sssKWeqavRLCrfv~eqTMWAtl 608 (737)
T KOG1524|consen 576 YPEIL-----------------------------------------------HEYLSSSKWEQAVRLCRFVQEQTMWATL 608 (737)
T ss_pred cHHHH-----------------------------------------------HHHhccchHHHHHHHHHhccchHHHHHH
Confidence 21110 0113567999999999999999999999
Q ss_pred HHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchH
Q 002511 675 GELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPE 754 (914)
Q Consensus 675 a~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~ 754 (914)
|.+|..+.++..+|.+|..+++.+++.++.......+.-.++|+.....|+...|..+++..|...+|+.+.+++..|.+
T Consensus 609 Aa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~R 688 (737)
T KOG1524|consen 609 AAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRR 688 (737)
T ss_pred HHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhhhcChh
Q 002511 755 AALMARSYLPSKVSEIVAIWRKDLQKVNPK 784 (914)
Q Consensus 755 A~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 784 (914)
|++++.+|. +.++.+++..++||+...++
T Consensus 689 ALEl~~K~K-~~v~~Vl~yR~KyLk~~g~~ 717 (737)
T KOG1524|consen 689 ALELSQKHK-ELVPRVLQYRRKYLKALGRE 717 (737)
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHHHhccc
Confidence 999999997 67889999999999866554
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-38 Score=330.98 Aligned_cols=431 Identities=15% Similarity=0.244 Sum_probs=352.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeee-cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
...+.+++++.+||+..|+++...+.+++|++.+++.++..+. |++||..++|+|.|..+++|+.||.++|||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456899999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred eEEEecCCCCEEEEEEeCCCCE--EEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPY--VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (914)
.+.|++|.+.|.++.|+|+-.+ |++|..|+++++||+.....+..++..|.+.|+++.|++ ++..+++++.|..+.+
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIV 218 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEE
Confidence 9999999999999999998654 789999999999999987677788889999999999999 7999999999999999
Q ss_pred EECCCCCCcEEEecCCCCeeEEEEeeC---CCcCEEEEEEcCCeEEEEECCCCceEEEecCc-ccceEEEEEeCCCCEEE
Q 002511 170 WNLGSPDPNFTLDAHQKGVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIII 245 (914)
Q Consensus 170 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~ 245 (914)
||+.+.+...++. ....+-++.+-++ +.+.++++.+.+|.+++||..+++++...... ...+..+...+....++
T Consensus 219 wd~~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 219 WDLVQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred eehhhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 9997766665554 3345566666655 22348999999999999999998876554432 22366666666555666
Q ss_pred EEECCCeEEEEeCCCceeEEEeecCCccEEEEEEe-cCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEE
Q 002511 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQT 324 (914)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 324 (914)
..+.|..+.++|..+.++...+.+..+.|..++|- |+.+++++++..+.++++.......
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c------------------- 358 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC------------------- 358 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce-------------------
Confidence 66778899999999999999999888999999865 5678999999999999852111100
Q ss_pred EEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecc---------cccccCceeE
Q 002511 325 VNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAW---------RNRSFGSALE 394 (914)
Q Consensus 325 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~---------~~~~~~~~~~ 394 (914)
.-+.+|...+.++....+|-+|++|+ |..+++|..... -+.+.+.+.+
T Consensus 359 ----------------------~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 359 ----------------------QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred ----------------------EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 01245555666777667788999999 999999977322 1345577888
Q ss_pred EEEecCC-cEEEEec-CCeEEEeccCcccce----ee-------------ec-CcccceeecCcEEEEEeCC-eEEEEec
Q 002511 395 FVWSSDG-EYAVRES-SSKIKIFSKNFQEKR----SV-------------RP-TFSAERIYGGTLLAMCSND-FICFYDW 453 (914)
Q Consensus 395 ~~~s~~~-~~l~~~~-~~~i~v~~~~~~~~~----~~-------------~~-~~s~~~i~~g~~La~~~~~-~i~~~d~ 453 (914)
++++..+ .++++++ |.++++|++...... .+ .. +++|. .+++|+++.| +.++|++
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n----dkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN----DKLIATGSQDKTAKIWDL 492 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC----CceEEecccccceeeecc
Confidence 9887666 6788887 899999986541111 11 11 44555 8999999999 9999999
Q ss_pred cCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 454 AECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 454 ~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
+.+++...+.+ .+.+|.|++..+.+++++.|..+.+|
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 99999888886 79999999999999999999999888
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.2e-39 Score=334.66 Aligned_cols=435 Identities=19% Similarity=0.284 Sum_probs=358.1
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
...|+|++-+|+...||+|-.||.|+||+..++....++.+|...|+++.|...|..|++||.|+.|.+||+-...-...
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999988778889
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
+.+|.+.|+.+-|..+.+++++++.|+.|++||+++. .+..+...|.+.++.+++.+ +.+++++.|+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tq-hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQ-HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccc-eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeec
Confidence 9999999999999998889999999999999999998 88888889999999999975 7899999999999999710
Q ss_pred C------------------------CC-----------------------------------------------------
Q 002511 175 P------------------------DP----------------------------------------------------- 177 (914)
Q Consensus 175 ~------------------------~~----------------------------------------------------- 177 (914)
. +.
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 0 00
Q ss_pred -----------------------------------------------------------------cEEEecCCCCeeEEE
Q 002511 178 -----------------------------------------------------------------NFTLDAHQKGVNCVD 192 (914)
Q Consensus 178 -----------------------------------------------------------------~~~~~~~~~~v~~~~ 192 (914)
...+.+|...|.+++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 012234556677777
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCc
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE 272 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 272 (914)
++.+.. ++..+..+.+++|+..+.++++++.. ..+.+..|.|.++++++|...|.+.+||+.+..++.+...|.+
T Consensus 381 vS~d~~---~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 381 VSSDSI---LLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred eecCce---eeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 776553 44455578899999999999999973 3788999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCc
Q 002511 273 RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC 352 (914)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (914)
.+|+++.+||+..+++|+.|.+|.+|...-..- .....+.+ +.+ ...+ .-..
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~~gt~~k~---------lsl---------~~~r--------tLel 507 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--VPGTQKKV---------LSL---------KHTR--------TLEL 507 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEec--cCccccee---------eee---------ccce--------EEec
Confidence 999999999999999999999999984221110 00111010 000 0000 0112
Q ss_pred ccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccccCceeEEEEecCCcEEEEec-CCeEEEeccCcccc-ee
Q 002511 353 DLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEK-RS 424 (914)
Q Consensus 353 ~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~-~~ 424 (914)
+..+.++++||||++||++- |+++.+|.+...+ ..+.-+|.++..|||++.+++++ |..|+||-++|..- ++
T Consensus 508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence 23567999999999999998 9999999776654 23445899999999999999999 89999999887532 22
Q ss_pred e-------ec-CcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 425 V-------RP-TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 425 ~-------~~-~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
+ .. .|-|+ ..++-+++.+ .|+.||-+.-+.++.+.+ .|++++.+|+|.++++++.|..+++|
T Consensus 588 ~fAHdDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhcccCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 2 11 56666 7777777777 999999988888888874 89999999999999999998888777
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=308.45 Aligned_cols=429 Identities=16% Similarity=0.235 Sum_probs=348.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC---
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--- 89 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~--- 89 (914)
.+...|++++.||+|.+|++....|.+.+-++.....++.+. .+.+|.|+.|||+|+++|+|.. +.+.||.....
T Consensus 53 e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~ 130 (893)
T KOG0291|consen 53 ETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKN 130 (893)
T ss_pred ecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhc
Confidence 466789999999999999999999999999988887777776 6678999999999999998865 57999976432
Q ss_pred -----eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce-EEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 90 -----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 90 -----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
...+++.+|.+.|.++.|+.|.++|++|+.|..+++|+++..+. ....+.+|..+|..+-|.. +...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~-~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA-NSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc-CcceEEEEec
Confidence 23456678999999999999999999999999999999986532 3567889999999999998 8888999999
Q ss_pred CCcEEEEECCC-----------------------CCC-----cE------EEecCCCCeeEEEEeeCCCcCEEEEEEcCC
Q 002511 164 DRTIKIWNLGS-----------------------PDP-----NF------TLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (914)
Q Consensus 164 dg~i~vwd~~~-----------------------~~~-----~~------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (914)
||.+.+|.... ++. .. -+......|++.+|++..+ +|++|...|
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~--~lvvgFssG 287 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTN--LLVVGFSSG 287 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCce--EEEEEecCC
Confidence 99999998751 111 00 0112236788999988776 899999999
Q ss_pred eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC-CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEE
Q 002511 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (914)
...+|.+....+++.+.....+|..++|+..|.+|+.|+.. |.+-+|+..+..-+...++|..++.+++++|||+++|+
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEe
Confidence 99999999999999999888999999999999999998754 89999999988888888999999999999999999999
Q ss_pred EecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEE
Q 002511 289 GYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFV 368 (914)
Q Consensus 289 ~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~l 368 (914)
|++||.|++|.... |-++ ..+..|...++.+.|+..|+.+
T Consensus 368 G~eDgKVKvWn~~S------------------------------------gfC~----vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQS------------------------------------GFCF----VTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred ccCCCcEEEEeccC------------------------------------ceEE----EEeccCCCceEEEEEEecCCEE
Confidence 99999999973221 1111 1135566678899999999999
Q ss_pred EEEc-CCcEEEEEeeccccc------ccCceeEEEEecCCcEEEEec-C-CeEEEeccCcccce---------eeecCcc
Q 002511 369 VVCG-DGEYIIYTALAWRNR------SFGSALEFVWSSDGEYAVRES-S-SKIKIFSKNFQEKR---------SVRPTFS 430 (914)
Q Consensus 369 av~~-~~~~~i~~~~~~~~~------~~~~~~~~~~s~~~~~l~~~~-~-~~i~v~~~~~~~~~---------~~~~~~s 430 (914)
.+.+ ||++..|+....++- ...+..|++..|.|..+..++ | -.|+||+++..... .....|+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 9888 999999998876632 223446788888899988887 4 46999996643222 1222688
Q ss_pred cceeecCcEEEEEeCC-eEEEEeccCC-cEEEEEE--cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 431 AERIYGGTLLAMCSND-FICFYDWAEC-RLIRRID--VTVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 431 ~~~i~~g~~La~~~~~-~i~~~d~~~~-~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
|+ +.+|++++.| +|++||+-+. ..+.+++ ..+..+.|.|||+.||+++-++-+-+|
T Consensus 488 ~~----~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 488 PD----GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred cc----cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 98 9999999999 9999998543 3444444 589999999999999999988666444
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-39 Score=297.62 Aligned_cols=295 Identities=21% Similarity=0.342 Sum_probs=260.1
Q ss_pred CCCcchhhhhcccCCCCEEEEEEcCCC-CEEEEEecCCcEEEEeCCC-----CceeEEeeecCCCeEEEEEecCCCEEEE
Q 002511 1 MPLRLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQS-----QTMAKSFEVTELPVRSAKFVARKQWVVA 74 (914)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~-~~la~~~~~g~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 74 (914)
|+-.+.+.-++.+|++.|+.++..+.+ ..+++++.|..+.+|++.. |..++.+.+|+..|..+..++||++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 556677788999999999999999975 4677888999999998754 6778999999999999999999999999
Q ss_pred EECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCC
Q 002511 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 75 g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (914)
++.|+.+++||+.+++..+.|.+|...|.+++|++|++.+++|+.|.+|++|+.-+.......-..+...|.|+.|+|..
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999988733333333347899999999943
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceE
Q 002511 155 -TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 155 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
..++++++.|++|++||+++.+....+.+|.+.++.+.++|+|. +.++|+.||.+.+||++.++.+.++. +...|.
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs--lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~ 237 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS--LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVN 237 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC--EEecCCCCceEEEEEccCCceeEecc-CCCeEe
Confidence 67899999999999999999999999999999999999999998 79999999999999999999988887 788999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC---------CccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG---------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
+++|+|+...|+.+. +..|+|||+.++..+..+... .....+++|++||+.|.+|..|+.|++|.
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999999976665554 557999999998877665432 23456789999999999999999999973
No 17
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.9e-38 Score=323.41 Aligned_cols=714 Identities=11% Similarity=0.096 Sum_probs=454.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC---------------ceeEEeeecCCCeEEEEEecCCCEEEEEECC
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---------------TMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (914)
......|++|+....++|+|+.||.++|..+.+. ...+++.+|+..|..+.|+.+.+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3457899999999999999999999999987653 2346788999999999999999999999999
Q ss_pred CEEEEEECCCCeeeEEE--ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCC
Q 002511 79 MFIRVYNYNTMDKVKVF--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN 156 (914)
Q Consensus 79 g~i~vwd~~t~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 156 (914)
|.|.||-+-.|.....+ ....+.|.+++|+.+|..++....||.|.+-.++.++...+.+.+.. ...+.|++ |..
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~--l~hv~ws~-D~~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL--LAHVLWSE-DLE 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe--ccceeecc-cHH
Confidence 99999998777654333 23456799999999999999999999999999988755555444432 45788999 788
Q ss_pred EEEEEeCCCcEEEEECCCCC-------Cc----EEEecCCCCeeEEEEeeC------CCcCEEEEEEcCCeEEEEECCCC
Q 002511 157 TFASASLDRTIKIWNLGSPD-------PN----FTLDAHQKGVNCVDYFTG------GDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 157 ~l~~~~~dg~i~vwd~~~~~-------~~----~~~~~~~~~v~~~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
.++.+-.+|.+++||....- +. ..+......+..+.|... ++.+.++++..+|.+.|..-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 88888889999999975421 10 111223344667777643 25668999999999999876554
Q ss_pred ceEEEecCcccceEEEEEeCCCCEEEEEECC---------CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 220 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
.....+. ....+..+.|+++|..|++++.+ +.|.+|. .-|..+.+++.+...|++++|-..|-.++.+-
T Consensus 250 ~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 250 PEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 4333333 23678899999999999998864 2566666 44788899999999999999998888888765
Q ss_pred cCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002511 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (914)
Q Consensus 291 ~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (914)
|+.+.+-.-++.-.+..-....+......+..
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p----------------------------------------------- 359 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELP----------------------------------------------- 359 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCc-----------------------------------------------
Confidence 55666532222222222111111111000000
Q ss_pred EcCCcEEEEEeeccc--ccccCceeEEEEecCCcEEEEec-CCeEEEeccCcccceeeecCcccceeecCcEEEEEeCCe
Q 002511 371 CGDGEYIIYTALAWR--NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDF 447 (914)
Q Consensus 371 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~ 447 (914)
.-.+.+|+..... .+......+++++.+--.++... ++.+.-++. .. .++.. -.++.+-+-
T Consensus 360 --~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~-le-------~~~~~----~~l~LCNSI-- 423 (1189)
T KOG2041|consen 360 --QYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYST-LE-------NRSRV----YFLQLCNSI-- 423 (1189)
T ss_pred --ceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhh-hh-------cccce----EEEeeeccc--
Confidence 0112334333221 11112223333333322233222 233322210 00 11110 000000000
Q ss_pred EEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhC------CC----CCCccccccce--
Q 002511 448 ICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDS------GK----PVDEQGVEDAF-- 515 (914)
Q Consensus 448 i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~f-- 515 (914)
|..+..--..|+-....-+|..+++++.+.+++|.|........+.. +. ..++.......
T Consensus 424 --------GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~y 495 (1189)
T KOG2041|consen 424 --------GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEY 495 (1189)
T ss_pred --------CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeec
Confidence 00000000112222233456677777777777777754333222111 11 11111111111
Q ss_pred --eEeeeeeeEEEeeEEecCEEEEEccCCeEEEEECCEEeEEEec--ccceEEEEEeecCCEEEEEecCCceEEEEecc-
Q 002511 516 --ELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMFHL--DRPMYLLGYLASQSRVYLIDKEFNVMGYTLLL- 590 (914)
Q Consensus 516 --~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~- 590 (914)
..+..+.+.|+..+..+.+|+....+|.++-|..........+ ....|.+.+.++.+|+.++|-.|.+..+.|+.
T Consensus 496 s~kt~~G~~DpICAl~~sdk~l~vareSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d 575 (1189)
T KOG2041|consen 496 STKTLLGSKDPICALCISDKFLMVARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYD 575 (1189)
T ss_pred cceeeccCCCcceeeeecceEEEEEeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccc
Confidence 2222346778888889999999999999987775555555554 35678899999999999999999888877753
Q ss_pred ---hhHhHHHHHHccCHHHHhhhcCC-------------------CCc-chH-HHHHHHH---HhCCChhhhhhcccCcc
Q 002511 591 ---SLIEYKTLVMRGDLERANEILPS-------------------IPK-EHH-NSVARFL---ESRGMIEEAIEVATDPD 643 (914)
Q Consensus 591 ---~~~~~~~~~~~~~~~~a~~~l~~-------------------i~~-~~~-~~~~~~~---~~~~~~~~a~~~~~~~~ 643 (914)
..+..-....++|.|+-.-.-.+ ++. .+. ..|..|- .+.-..++.+.....|.
T Consensus 576 ~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpeEp~s~sGyIc~FedLeitsVlld~Il~~pE~pn 655 (1189)
T KOG2041|consen 576 FDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPEEPSSVSGYICLFEDLEITSVLLDKILLTPENPN 655 (1189)
T ss_pred cCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCccccccccceEEEeeceEEEEEEHhhHhcCcCCCC
Confidence 11221234558888872111000 000 000 0000000 00111222222222232
Q ss_pred cce------------eeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH
Q 002511 644 YRF------------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE 711 (914)
Q Consensus 644 ~~f------------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~ 711 (914)
... .-.+....+++|.++++..++|++|+.||++|+.+.+++.|+++|+|++||.|+.++.|...-.+
T Consensus 656 k~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s 735 (1189)
T KOG2041|consen 656 KTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHS 735 (1189)
T ss_pred cceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhh
Confidence 211 12355667899999999999999999999999999999999999999999999999777766655
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHH---hh-hhcChhhhh
Q 002511 712 GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRK---DL-QKVNPKAAE 787 (914)
Q Consensus 712 ~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~---~L-~~~~~~~a~ 787 (914)
.-++.|++.. +.|+|++|.++|++++|.+.|++|+.+++.+. +++++++. .- ......+.+
T Consensus 736 ~~~q~aei~~-------------~~g~feeaek~yld~drrDLAielr~klgDwf--rV~qL~r~g~~d~dD~~~e~A~r 800 (1189)
T KOG2041|consen 736 KEQQRAEISA-------------FYGEFEEAEKLYLDADRRDLAIELRKKLGDWF--RVYQLIRNGGSDDDDEGKEDAFR 800 (1189)
T ss_pred HHHHhHhHhh-------------hhcchhHhhhhhhccchhhhhHHHHHhhhhHH--HHHHHHHccCCCcchHHHHHHHH
Confidence 5555555544 78999999999999999999999999998754 77777774 11 122334555
Q ss_pred hcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCccc
Q 002511 788 SLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (914)
Q Consensus 788 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (914)
.|+ ++ |.+..++.++.++|........++++|
T Consensus 801 ~ig---~~---fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 801 NIG---ET---FAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHH---HH---HHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 666 55 888889999999998888777777776
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-36 Score=309.67 Aligned_cols=621 Identities=20% Similarity=0.282 Sum_probs=399.4
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (914)
+.+..+..+|.++.|+|...+++++-.+|.|.|||.+|...++.+.-..-+|++..|-+-.+.+++|++|+.|++|+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34555888999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC
Q 002511 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (914)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (914)
. ...+.+..|...|.+++.+| ...+++++|.|-+|++||-... .+.+++.+|...|.+++|.|.... .+++++-|+
T Consensus 87 ~-ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tFaS~sLDr 163 (794)
T KOG0276|consen 87 G-EKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TFASASLDR 163 (794)
T ss_pred c-eeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ceeeeeccc
Confidence 8 77889999999999999999 7789999999999999998764 466789999999999999998655 899999999
Q ss_pred eEEEEECCCCceEEEecCcccceEEEEEeCCC--CEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEE
Q 002511 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (914)
+|++|.+.+..+..++.+|...|.++.+-+.| ++|++|+.|.+|+|||..+..+++++.+|...|..+.|+|.-..++
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 99999999999999999999999999998854 7999999999999999999999999999999999999999999999
Q ss_pred EEecCCeEEEEcCCCcc-----------eeEEc---CCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002511 288 IGYDEGTIMVKIGREEP-----------VASMD---NSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (914)
Q Consensus 288 ~~~~dg~i~i~~~~~~~-----------~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (914)
+|+.||++++|....-. ++++. .++++....+....++.+ |+
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l-----------gr------------- 299 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL-----------GR------------- 299 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc-----------cC-------------
Confidence 99999999999654422 22221 223322222222222221 11
Q ss_pred cCCceEEECCCCCEEEEEcCCcEE---EEEeecc-----------cccccCce----eEEEEecCCcEEEEecCCeEEEe
Q 002511 354 LYPQSLKHNPNGRFVVVCGDGEYI---IYTALAW-----------RNRSFGSA----LEFVWSSDGEYAVRESSSKIKIF 415 (914)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~~~~~~---i~~~~~~-----------~~~~~~~~----~~~~~s~~~~~l~~~~~~~i~v~ 415 (914)
....+..+++|+.+-... +++. +..+... ..+..|++ ..++-||+|++++++.||.-.||
T Consensus 300 -eeP~vsMd~~gKIiwa~~-~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIy 377 (794)
T KOG0276|consen 300 -EEPAVSMDSNGKIIWAVH-SEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIY 377 (794)
T ss_pred -CCCceeecCCccEEEEcC-ceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEE
Confidence 112455556664433222 2211 1111111 11222322 46777999999999999998888
Q ss_pred c-cCcccce---eeecCcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEEEcceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 416 S-KNFQEKR---SVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 416 ~-~~~~~~~---~~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
. +.++... .....|++| ..-.|+..++ .|.++ ...+..+.++..-. ...--.|.+|...+.+.+++++
T Consensus 378 Tala~RnK~fG~~~eFvw~~d----sne~avRes~~~vki~--knfke~ksi~~~~~-~e~i~gg~Llg~~ss~~~~fyd 450 (794)
T KOG0276|consen 378 TALALRNKAFGSGLEFVWAAD----SNEFAVRESNGNVKIF--KNFKEHKSIRPDMS-AEGIFGGPLLGVRSSDFLCFYD 450 (794)
T ss_pred EeeehhhcccccceeEEEcCC----CCeEEEEecCCceEEE--ecceeccccccccc-eeeecCCceEEEEeCCeEEEEE
Confidence 5 1111111 011145555 5667777655 77777 66666666553222 2233467788888988888765
Q ss_pred ecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecC--EEEEEccCCeEEEEE-------------CCEEeE-
Q 002511 491 YNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGD--CFIYNNSSWRLNYCV-------------GGEVTT- 554 (914)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~--~~i~~~~~~~l~~~~-------------~~~~~~- 554 (914)
... -..+..|+...+...|.++ +....++.. ||+ ++....
T Consensus 451 W~~---------------------~~lVrrI~v~~k~v~w~d~g~lVai~~d~S---fyil~~n~d~v~~a~e~g~~v~e 506 (794)
T KOG0276|consen 451 WES---------------------GELVRRIEVTSKHVYWSDNGELVAIAGDDS---FYILKFNADAVANAVEQGIEVTE 506 (794)
T ss_pred ccc---------------------ceEEEEEeeccceeEEecCCCEEEEEecCc---eeEEEecHHHHHHHHhcCCCCcc
Confidence 321 1233345556667778764 222222222 111 000000
Q ss_pred ---------EEecccceE-------EEEEeecCCEEEEEecCCceEEEEecc--hhHhHHHHHHccCH-HHHhhhcCCCC
Q 002511 555 ---------MFHLDRPMY-------LLGYLASQSRVYLIDKEFNVMGYTLLL--SLIEYKTLVMRGDL-ERANEILPSIP 615 (914)
Q Consensus 555 ---------~~~~~~~~~-------~~~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~~~~~~~-~~a~~~l~~i~ 615 (914)
+......+. ..=|....+|+...=.......+.++. .++-|-. +++. -.+++-+.-+.
T Consensus 507 eGiedAfevLgE~sE~v~tg~WvgD~fiytts~nrlnY~vgGe~~~v~h~~~~mylLgy~~---~~~rvYL~Dke~nVi~ 583 (794)
T KOG0276|consen 507 EGIEDAFEVLGEVSESVKTGKWVGDCFIYTTSNNRLNYLVGGETYTVAHLDRIMYLLGYVA---NDNRVYLHDKELNVIS 583 (794)
T ss_pred hhHHHHHHHHhhhhhheeeceeeeeEEEEeecccceeEEcCCceEEEEEeccchhheeeee---cCCEEEEeecccceEe
Confidence 000000000 000111223332111222222333321 1111100 0000 00000000000
Q ss_pred cchHHHHHHH--HHhCCChhhhhhcc----cCcccce-eeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHH
Q 002511 616 KEHHNSVARF--LESRGMIEEAIEVA----TDPDYRF-ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAE 688 (914)
Q Consensus 616 ~~~~~~~~~~--~~~~~~~~~a~~~~----~~~~~~f-~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~ 688 (914)
-...-.+..| +.-.+.++.|..+- .+...+. ...-.+|..++|++++..-+ +. =+.|++.|++++|.
T Consensus 584 y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d--~r----Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 584 YKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPD--QR----FELALKLGRLDIAF 657 (794)
T ss_pred EeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChh--hh----hhhhhhcCcHHHHH
Confidence 0000011111 11122233333211 1111111 22335666777777763322 12 24577778888888
Q ss_pred HHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCch
Q 002511 689 GCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIP 753 (914)
Q Consensus 689 ~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~ 753 (914)
. |.....+...+.+|++.|...++..+|..|+.+..|+.--+=++-.+|.-+
T Consensus 658 ~-------------la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 658 D-------------LAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAE 709 (794)
T ss_pred H-------------HHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChh
Confidence 7 777788888899999999999999999999888888777777777666544
No 19
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7e-37 Score=324.58 Aligned_cols=639 Identities=19% Similarity=0.308 Sum_probs=395.1
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
.+..+|..|.++|+.++|||+++++++|+.|-.|+||++.+.+++.++.+|-.-|+.+.|++.-.||+++|+|.+|+|||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------------------------ceEEEE
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----------------------------WMCTQI 137 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------------------~~~~~~ 137 (914)
+.+++++..+.+|...|.|..|+|....++++|-|.+|++||+..- .....+
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999997531 234566
Q ss_pred eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC--CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
+.+|...|.-++|+| .-.++++|+.|+.|++|.++..+ .+-+..+|...|.++-|+|..+ ++++.+.|++|++||
T Consensus 202 LEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--LILSNSEDKSIRVWD 278 (1202)
T ss_pred ecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--eeEecCCCccEEEEe
Confidence 789999999999999 78899999999999999986544 2345679999999999998776 899999999999999
Q ss_pred CCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeE----------------E-------------E
Q 002511 216 YQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE----------------N-------------T 266 (914)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----------------~-------------~ 266 (914)
+...+.+++++......+.++.+|..+++++|. |+-+.+|.+..-++. . .
T Consensus 279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred cccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEe
Confidence 999999999988888999999999999888776 444555654422111 1 1
Q ss_pred eecC---CccEEEEEEecCCCEEEEEe--cCCeEEEEcCCC------c-ceeEEcCCCcEEEEeeCcEEEEEeeecccce
Q 002511 267 LNYG---LERVWAIGYMKSSRRIVIGY--DEGTIMVKIGRE------E-PVASMDNSGKIIWAKHNEIQTVNIKSVGADY 334 (914)
Q Consensus 267 ~~~~---~~~v~~i~~~~~~~~l~~~~--~dg~i~i~~~~~------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (914)
+... ..++.+++++|..+.+..++ ++|...+..-.. . +...-.+....+|...+...+++-++....+
T Consensus 358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~i 437 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVI 437 (1202)
T ss_pred ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEE
Confidence 1111 14556677777655544442 233333211100 0 1111111222333333333222221111100
Q ss_pred eccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc---cccCceeEEEEecCCcEEEEecCCe
Q 002511 335 EVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN---RSFGSALEFVWSSDGEYAVRESSSK 411 (914)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~---~~~~~~~~~~~s~~~~~l~~~~~~~ 411 (914)
.-...+. .+.+..+ .....+-+.-.|.+|. .+...+.+|++..... .....+.-++||+|..
T Consensus 438 k~l~N~v----tkkl~~~-~~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~si~~s~vkyvvws~dm~--------- 502 (1202)
T KOG0292|consen 438 KNLKNKV----TKKLLLP-ESTDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVGSIKVSKVKYVVWSNDMS--------- 502 (1202)
T ss_pred ecccchh----hhcccCc-ccccceeeccCccEEE-EcCCeEEEEEeecceEEEEEecCceeEEEEcCccc---------
Confidence 0000000 0000000 0112233333332222 2233344444433321 1122333444444444
Q ss_pred EEEeccCcccceeeecCcccceeecCcEEEEEeCCeEEEEeccCCcEEEEEE--cceeEEEEcCCCCEEEEEeCCeEEEE
Q 002511 412 IKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYIL 489 (914)
Q Consensus 412 i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (914)
++|.-+..+|.+++.. -+++..+. ..|++-+|..+|-++-+..+.-.|
T Consensus 503 ---------------------------~vAll~Kh~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~nHikY-- 552 (1202)
T KOG0292|consen 503 ---------------------------RVALLSKHTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTLNHIKY-- 552 (1202)
T ss_pred ---------------------------hhhhcccceEEEEecc-hhheecchheeEeeeceeccCceEEEEehhhhhh--
Confidence 4444444445554422 22233222 356677777776665555443211
Q ss_pred EecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCEEEEEccCCeEEEEECCEE-eEEEecccceEEEEEe
Q 002511 490 KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEV-TTMFHLDRPMYLLGYL 568 (914)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 568 (914)
.+.+| +.|..+... ..+.+..-. +...||.+.+. ..+.+++...|...+.
T Consensus 553 ---------al~~G----D~GIikTLd---------------~~iyitkv~-gn~V~cl~rd~~~~~~~IDptEy~FKlA 603 (1202)
T KOG0292|consen 553 ---------ALENG----DSGIIKTLD---------------KPIYITKVK-GNKVFCLNRDGEIECLTIDPTEYRFKLA 603 (1202)
T ss_pred ---------hhccC----CcceEEecc---------------cceEEEEee-CCEEEEEecCCCeEEEeechHHHHHHHH
Confidence 11111 122221111 111222222 22333331111 1122222211110000
Q ss_pred ------------ecCCE------EEEEecCCceE--EEEecchhHhHHHHHHccCHHHHhhhcCCCCcchHH-HHHHHHH
Q 002511 569 ------------ASQSR------VYLIDKEFNVM--GYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHN-SVARFLE 627 (914)
Q Consensus 569 ------------~~~~~------l~~~d~~~~~~--~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~ 627 (914)
.++.. +..+.++|... .--+..+-.+|..+++-|.++.|.+.-.++..+.+. ++.
T Consensus 604 Li~k~ydeVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~w~rLg---- 679 (1202)
T KOG0292|consen 604 LLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDVWERLG---- 679 (1202)
T ss_pred HHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHHHHHHH----
Confidence 00000 00111222111 000122345666777777777766655444444431 111
Q ss_pred hCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHH
Q 002511 628 SRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLY 704 (914)
Q Consensus 628 ~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~ 704 (914)
+-||..|+-+-|.-+.++. .-|.+|.-.|+-.|+.+.-.++...+ +|..+.....
T Consensus 680 -------------------e~Al~qgn~~IaEm~yQ~~---knfekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qna 737 (1202)
T KOG0292|consen 680 -------------------EEALRQGNHQIAEMCYQRT---KNFEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNA 737 (1202)
T ss_pred -------------------HHHHHhcchHHHHHHHHHh---hhhhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 2234566666666555543 35888888888888888888877766 4666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCC
Q 002511 705 SSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNR 751 (914)
Q Consensus 705 ~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~ 751 (914)
.-+|| +++..++....|...+|...+.-.|.-++|.++....+.
T Consensus 738 lYl~d---v~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 738 LYLGD---VKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHhcc---HHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhcc
Confidence 66888 778888999999999999999999999999999888774
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=324.57 Aligned_cols=473 Identities=15% Similarity=0.177 Sum_probs=367.3
Q ss_pred hhhhhccc-CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCC--EEEEEECCCEEE
Q 002511 6 EIKRKLAQ-RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIR 82 (914)
Q Consensus 6 ~~~~~l~~-h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~ 82 (914)
++.+.++. |+++|.-++|+|.+..|++|+.||.|+|||+..+.+.+.|++|.+.|.++.|+|+-. .|++|..|+.++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 56677777 999999999999999999999999999999999999999999999999999999754 488999999999
Q ss_pred EEECCCCee-eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCC-----CC
Q 002511 83 VYNYNTMDK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD-----TN 156 (914)
Q Consensus 83 vwd~~t~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~-----~~ 156 (914)
+||+++... +..+..|.+.|+++.|++|+..+++++.|..+.+||+.+- +...++.-. ..+-++.+-+ + +.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~-~~l~~lp~y-e~~E~vv~l~-~~~~~~~~ 251 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY-KKLKTLPLY-ESLESVVRLR-EELGGKGE 251 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh-hhhheechh-hheeeEEEec-hhcCCcce
Confidence 999996655 7778899999999999999999999999999999999654 333333322 3356666665 3 56
Q ss_pred EEEEEeCCCcEEEEECCCCCCcEEEecC-CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEE
Q 002511 157 TFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAV 235 (914)
Q Consensus 157 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 235 (914)
++++.+.+|.+++||..+++........ ...+..+...+... .++..+.+..+.++|.++.+....+-|....|..+
T Consensus 252 ~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~--~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 252 YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS--QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred EEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC--ceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 9999999999999999988776544322 22244444444444 37777778899999999999999999999999999
Q ss_pred EEe-CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC--------------
Q 002511 236 CFH-PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG-------------- 300 (914)
Q Consensus 236 ~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~-------------- 300 (914)
+|- |+.+++++++..+.+|+|+..+..+. .+.+|...|.++....+|-+|++|+.|.++++|..
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 874 57789999999999999998876665 78899999999997778889999999999999933
Q ss_pred -CCcc--eeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeee-eecCCcccCCceEEECCCCCEEEEEc-CCc
Q 002511 301 -REEP--VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAV-KELGTCDLYPQSLKHNPNGRFVVVCG-DGE 375 (914)
Q Consensus 301 -~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~l~~s~~g~~lav~~-~~~ 375 (914)
+... .+++...+--++.+.+.-.++.++....+ -.+...+.+.. .....|+..|.+++++|+.+++|+|+ |..
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s--~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS--KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCc--ccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 1111 12223333333444444444444433220 01111111100 11245777899999999999999999 899
Q ss_pred EEEEEeeccc-----ccccCceeEEEEecCCcEEEEec-CCeEEEeccC-------cccce--eeecCcccceeecCcEE
Q 002511 376 YIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN-------FQEKR--SVRPTFSAERIYGGTLL 440 (914)
Q Consensus 376 ~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~-------~~~~~--~~~~~~s~~~i~~g~~L 440 (914)
..||+....+ ..+...+.++.|++..+.+++.+ |.+|+||.++ +.++. .++..|-.+ |+.|
T Consensus 487 aKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~----~~ql 562 (775)
T KOG0319|consen 487 AKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRN----GKQL 562 (775)
T ss_pred eeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeC----CcEE
Confidence 9999887543 33456789999999999999988 8999999965 22222 123345444 8888
Q ss_pred EEEeCC-eEEEEeccCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 441 AMCSND-FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 441 a~~~~~-~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
++++.+ -+++|++.+++++..++. .|+.+.-++.+.++++++.|+.+++|
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 887777 999999999999998874 89999999999999999999999887
No 21
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=319.00 Aligned_cols=282 Identities=23% Similarity=0.376 Sum_probs=259.2
Q ss_pred ecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCC--CCEEEEEEcCCeEEEEECCCCc
Q 002511 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGW 132 (914)
Q Consensus 55 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 132 (914)
+.+.||..+.||++++.|++|+-+|.++||+..+...+.++.+|...|.++.|+|. +..|++|+.||++++|++++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 45679999999999999999999999999999999999999999999999999997 568999999999999999987
Q ss_pred eEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEE
Q 002511 133 MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (914)
Q Consensus 133 ~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (914)
.+...+.+|...|..++|+| +|.+|++++.|.+-++||+.++..+....+|..+|.+++|.++|. ++++|+.|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS--L~~tGGlD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS--LAATGGLDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc--eeeccCccchhh
Confidence 78888999999999999999 999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEec-CCCEEEEEec
Q 002511 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK-SSRRIVIGYD 291 (914)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 291 (914)
|||+++|.++..+.+|..+|.+++|+|+|-.|++||.|++++|||++..+.+.++..|..-|..+.|+| .|.+|++++.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7899999999
Q ss_pred CCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE
Q 002511 292 EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC 371 (914)
Q Consensus 292 dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~ 371 (914)
|+++.+|....-. .++.+.+|+..|-++.++|||++++++
T Consensus 409 D~t~kiWs~~~~~----------------------------------------~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 409 DNTVKIWSTRTWS----------------------------------------PLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred CcceeeecCCCcc----------------------------------------cchhhcCCccceEEEEeccCCceEEEe
Confidence 9999998544321 123356777777888888888888888
Q ss_pred c-CCcEEEEE
Q 002511 372 G-DGEYIIYT 380 (914)
Q Consensus 372 ~-~~~~~i~~ 380 (914)
+ |..+.+|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 7 77777773
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-37 Score=307.93 Aligned_cols=325 Identities=22% Similarity=0.325 Sum_probs=281.0
Q ss_pred hhcccCCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCC----ceeEEee----------ecCCCeEEEEEecCCCEEE
Q 002511 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQ----TMAKSFE----------VTELPVRSAKFVARKQWVV 73 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~----~~~~~~~----------~~~~~v~~~~~s~~~~~l~ 73 (914)
+.+. |..+|.+.+|+|-.. .+++|+.+...++|++... .....++ ..+..|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4444 999999999999666 8999999999999998741 1111111 1235799999999999999
Q ss_pred EEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccC
Q 002511 74 AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (914)
Q Consensus 74 ~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (914)
+|+.||.+++|+. +|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++ ...+.+.-|..+-..+.|-
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q~f~~~s~~~lDVdW~-- 327 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQQFEFHSAPALDVDWQ-- 327 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEEeeeeccCCccceEEe--
Confidence 9999999999996 47889999999999999999999999999999999999999988 7788888888877788897
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceE
Q 002511 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 154 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
+...|++++.|+.|+++.+....|+.++.+|.+.|+++.|.|.+. +|+++++|++++||+.....+...+..|...|.
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS--LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY 405 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc--eEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence 578899999999999999999999999999999999999999887 899999999999999988899999999999999
Q ss_pred EEEEeCCCC---------EEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcc
Q 002511 234 AVCFHPELP---------IIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP 304 (914)
Q Consensus 234 ~i~~~~~~~---------~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~ 304 (914)
.+.|+|.|+ .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.||.|.+|..+...
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 999999764 78999999999999999999999999999999999999999999999999999998655544
Q ss_pred eeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002511 305 VASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (914)
++.-.. ....|..+.|+.+|..|.++. ++.+.+.++
T Consensus 486 l~~s~~-----------------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 486 LVKSYQ-----------------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred eeEeec-----------------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 332211 111345788999988887775 777766543
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-38 Score=301.52 Aligned_cols=295 Identities=27% Similarity=0.447 Sum_probs=278.8
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
+..+...+.+|..+|+.+-|+|+...+++++.|++|++||..+++....+++|...|..++|+..|+++++++.|-.+.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC-CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 84 YNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 84 wd~~t-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++ -+..++.+|...|..+..+. |+.++++++
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~ewvr~v~v~~-DGti~As~s 254 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSEWVRMVRVNQ-DGTIIASCS 254 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchHhEEEEEecC-CeeEEEecC
Confidence 99986 5678888899999999999999999999999999999999999 88899999999999999998 999999999
Q ss_pred CCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCC-------------CcCEEEEEEcCCeEEEEECCCCceEEEecCcc
Q 002511 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-------------DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT 229 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 229 (914)
.|.+|++|-+.++++...++.|+.+|.|++|.|.. ..+++.+++.|++|++||+.++.++.++.+|.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd 334 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD 334 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc
Confidence 99999999999998889999999999999998742 12489999999999999999999999999999
Q ss_pred cceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 230 HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 230 ~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
..|..++|+|.|++|+++..|+++++||++++++..++..|..-++++.|..+..++++|+-|..+.+|..
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=284.57 Aligned_cols=287 Identities=22% Similarity=0.340 Sum_probs=256.8
Q ss_pred eEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002511 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (914)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 129 (914)
.+++++|.+.|.++.|++|+++|++++.||.+.|||.-|..+++.++-....|..++|+|.|+++++|+-|....||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37899999999999999999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CC-----ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 130 KG-----WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 130 ~~-----~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
+. ....+.+.+|.+++.++.|.+ .+.|++++.|.+..+||+.+++.+..+.+|.+.|.+++++|. +.+.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-DGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-CCCeEEe
Confidence 43 245667899999999999985 678999999999999999999999999999999999999994 2338999
Q ss_pred EEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC--CccEEEEEEecC
Q 002511 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKS 282 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~ 282 (914)
|+.|+..++||++.+.++++|.+|...|.+++|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++||..
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999888777644 468999999999
Q ss_pred CCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002511 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (914)
Q Consensus 283 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (914)
|++|.+|..|.++.+|..- .++++ ..+..|+..|+++..+
T Consensus 285 GRlLfagy~d~~c~vWDtl------------------------------------k~e~v----g~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTL------------------------------------KGERV----GVLAGHENRVSCLGVS 324 (343)
T ss_pred ccEEEeeecCCceeEeecc------------------------------------ccceE----EEeeccCCeeEEEEEC
Confidence 9999999999999997321 11211 1245777788899999
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002511 363 PNGRFVVVCG-DGEYIIY 379 (914)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (914)
|||.-|++++ |..+.||
T Consensus 325 ~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 325 PDGMAVATGSWDSTLRIW 342 (343)
T ss_pred CCCcEEEecchhHheeec
Confidence 9998888888 8888887
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.4e-37 Score=302.88 Aligned_cols=277 Identities=24% Similarity=0.361 Sum_probs=259.4
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~ 95 (914)
..|++++|+.+|..||+|..+|.++||+ .+|.++.++..|.+||.++.|+.+|.+|++++.|+++.+||..++.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999999 678888999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 002511 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (914)
Q Consensus 96 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 175 (914)
.-|..+-..+.|-.+. .+++++.||.|+++.+... .+..++.+|.+.|.++.|+| .+.+|++++.|+++++|+....
T Consensus 315 ~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecCc-eEeecCCCceEEEEEecCC-CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCC
Confidence 9999887888998654 6899999999999999876 77888888999999999999 8999999999999999999998
Q ss_pred CCcEEEecCCCCeeEEEEeeCCC-------cCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEE
Q 002511 176 DPNFTLDAHQKGVNCVDYFTGGD-------KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (914)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 248 (914)
.....+..|...|..+.|+|.+. +..+++++.|++|++||...+.++.++..|..+|++++|+|+|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 89999999999999999999763 33789999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 249 EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 249 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
.||.|.+|+.++++..+.+... +.|..++|+.+|..|.++..+|.+.+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCV 519 (524)
T ss_pred CCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceE
Confidence 9999999999999999998866 66999999999999999999998876
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-35 Score=272.19 Aligned_cols=297 Identities=22% Similarity=0.317 Sum_probs=246.3
Q ss_pred eeEEeeecCCCeEEEEEecC-CCEEEEEECCCEEEEEECC-----CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCe
Q 002511 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYN-----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 122 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~-----t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 122 (914)
...++++|++.|+.++..+. ...+++++.|..+.+|++. .|..++.+.+|...|..+..+++|++.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 44578899999999999987 5678888999999999875 46778999999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC--CCCeeEEEEeeCCCcC
Q 002511 123 IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKP 200 (914)
Q Consensus 123 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~ 200 (914)
+++||+.++ +..+.+.+|...|.+++|+| ++..+++|+.|.+|++|+.... +..++..+ ..-|.|++|+|+...+
T Consensus 87 lrlWDl~~g-~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATG-ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCC-cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999998 88899999999999999999 8999999999999999998654 44444333 6789999999998888
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEe
Q 002511 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYM 280 (914)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~ 280 (914)
+|++++.|++|++||+++-+....+.+|.+.++.+++||||.++++|+.||.+.+||++.++.+.++... ..|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-CeEeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998877644 889999999
Q ss_pred cCCCEEEEEecCCeEEEEcCCCcce-eEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceE
Q 002511 281 KSSRRIVIGYDEGTIMVKIGREEPV-ASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL 359 (914)
Q Consensus 281 ~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 359 (914)
|+...|+.+...+ |+||......+ ..+..++.-. .. ......-.++
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~-------------------s~-------------~~~~~~clsl 289 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGP-------------------SS-------------KAGDPICLSL 289 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhhhhhcccccccc-------------------cc-------------ccCCcEEEEE
Confidence 9988888777666 66664333221 1111110000 00 1111122478
Q ss_pred EECCCCCEEEEEc-CCcEEEEEee
Q 002511 360 KHNPNGRFVVVCG-DGEYIIYTAL 382 (914)
Q Consensus 360 ~~s~~g~~lav~~-~~~~~i~~~~ 382 (914)
+||+||+.|..+- ++.+.+|.+.
T Consensus 290 aws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 AWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999887775 8888888653
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=302.91 Aligned_cols=281 Identities=27% Similarity=0.475 Sum_probs=252.5
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~ 95 (914)
-.|..+.|.|+|+.|++|+..|.+.+|+..+......+..|+.+|+++.|+++|.++++|+.+|.|++|+.+ ...++.+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHh
Confidence 468999999999999999999999999976655555567899999999999999999999999999999976 4556666
Q ss_pred ecCC-CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 96 EAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 96 ~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
.+|. ..|++++|+|+...++++++||+|+|||.... .....+.+|.-.|.++.|+| ...++++++.|..|++||.++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC
Confidence 6554 89999999999999999999999999999876 55566799999999999999 788999999999999999999
Q ss_pred CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCC-CEEEEEECCCeE
Q 002511 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTV 253 (914)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v 253 (914)
+.++.++..|+..|..+.|+++++ +|++++.|..++++|+++.+.+.++++|...++++.|+|-. .+|.+|+.||.|
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N--~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGN--WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCC--eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999985 99999999999999999999999999999999999999944 588899999999
Q ss_pred EEEeCCCceeEEEe-ecCCccEEEEEEecCCCEEEEEecCCeEEEEcCC
Q 002511 254 RIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 254 ~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~ 301 (914)
..|.+...+++..+ ..|...||+++|+|-|..|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998855544443 3577899999999999999999999999999643
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.6e-36 Score=287.34 Aligned_cols=291 Identities=19% Similarity=0.406 Sum_probs=266.8
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
..++.+.+.+|-+-|.|+++.|-..|+++|+.|++++|||+.+|++..++.+|-..|+.+++|+...++++++.|+.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
||+...+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++. .....+.+|..+|.++.+.| -+..+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-ASVHVLSGHTNPVASVMCQP-TDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-ceEEEecCCCCcceeEEeec-CCCceEEecC
Confidence 999999999999999999999999999999999999999999999997 77889999999999999999 5668999999
Q ss_pred CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCE
Q 002511 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
|++|++||++.++...++..|+..|.+++.+|... .+++++.| .|+.|++..|..+..+.+|...|.+++...|+ +
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~--~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN--LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred CceEEEeeeccCceeEeeecccceeeEEecCCchh--hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 99999999999999999999999999999998876 56666665 69999999999999999999999999999987 7
Q ss_pred EEEEECCCeEEEEeCCCceeEEEee---c-----CCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 244 IITGSEDGTVRIWHATTYRLENTLN---Y-----GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~---~-----~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
+++|+.+|.+.+||.++|-..+... . ....|.+.+|...|..|++|..|.+|.+|..
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 8899999999999998876544332 1 1246889999999999999999999999743
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=263.80 Aligned_cols=270 Identities=19% Similarity=0.393 Sum_probs=240.7
Q ss_pred CEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee--eEEEecCCCCEEEE
Q 002511 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK--VKVFEAHTDYIRCV 105 (914)
Q Consensus 28 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~--~~~~~~~~~~i~~~ 105 (914)
-+|+++++|.+|++|...+|.+..++...++.|+.+...|+++.||+++. ..|++||+++++. +.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37889999999999999999999999988899999999999999999876 5799999998764 78899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE-ecC
Q 002511 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAH 184 (914)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~ 184 (914)
.|..+|+.+++|++||+++|||++.. .+.+.+. |..+|.++..+| +...|++|..+|.|++||+........+ ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~-~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSL-SCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCc-ccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999985 5555554 669999999999 7888999999999999999887665544 334
Q ss_pred CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC------ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeC
Q 002511 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (914)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (914)
...|.++...|+|. +++.+...|.+++|++-+. .++..++.|.+.+..+.+||++++|+++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgs--ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGS--MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCc--EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 57889999999998 7999999999999998653 356778889999999999999999999999999999999
Q ss_pred CCc-eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCc
Q 002511 259 TTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (914)
Q Consensus 259 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~ 303 (914)
.+. +....+..|...+|.++||.||.+|++|+.|+..++|.....
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 988 677888889899999999999999999999999999854433
No 30
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=271.41 Aligned_cols=285 Identities=22% Similarity=0.380 Sum_probs=254.8
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCC-CCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEEC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQ-SQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (914)
...+.+|.+.|..+.|+|+|++||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44678999999999999999999999999999999953 34555678899999999999999999999999999999999
Q ss_pred CCCeeeEEEecCCCCEEEEEEeCCCCE-EEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 87 NTMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 87 ~t~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
++|+.++.++.|.+.|+.+.-+.-|.. +.+++.||++++||+++. ...+++. .+-.++++.|.. .+..+.+|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEEecc-cccceeeccccC
Confidence 999999999999999999986665654 558889999999999986 4555543 345689999997 788999999999
Q ss_pred cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC----CceEEEecCccc----ceEEEEE
Q 002511 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----KSCVQTLEGHTH----NVSAVCF 237 (914)
Q Consensus 166 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~v~~i~~ 237 (914)
.|++||++.+....++.+|..+|+.+..++.|. ++.+-+.|.++++||++. ..++..+.+|.. .....+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCC--ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999999999999999998 799999999999999974 345777777654 3567899
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+|++..+.+|+.|..+++||....+.+..+.+|.+.|.++.|+|...+|.+++.|.+|++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999999888899999999999999999999999999999999886
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=290.60 Aligned_cols=411 Identities=17% Similarity=0.246 Sum_probs=321.5
Q ss_pred CCCEEEEEecCCcEEEEeCCCCceeEEeee--cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEE
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~ 103 (914)
.|+++++. ....|.+||+++|+..+.+.. ...+|+|+.-+|+...||+|..||.|++|+..++....++.+|...|+
T Consensus 33 ~Gr~va~~-a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 33 KGRAVAVS-ALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CCcEEEEe-ccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 47766663 356799999999966555433 335899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec
Q 002511 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA 183 (914)
Q Consensus 104 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 183 (914)
++.|...|.+|++||.|+.|.+||+-.. .-...+.+|...|+..-|.. +.+.+++++.|+.|++||+.+..+..+.-.
T Consensus 112 ~l~fd~~G~rlaSGskDt~IIvwDlV~E-~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd 189 (888)
T KOG0306|consen 112 TLKFDKIGTRLASGSKDTDIIVWDLVGE-EGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHCFETHVD 189 (888)
T ss_pred EEEEcccCceEeecCCCccEEEEEeccc-eeeEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEecccceeeeEEec
Confidence 9999999999999999999999999876 66777899999999999987 789999999999999999999999999999
Q ss_pred CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC------------------------CceEE----------------
Q 002511 184 HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------------------------KSCVQ---------------- 223 (914)
Q Consensus 184 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------------~~~~~---------------- 223 (914)
|.+.+..+++.+ + .+++++.|+.+++|++.. ++.+.
T Consensus 190 ~r~Eiw~l~~~~--~--~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 190 HRGEIWALVLDE--K--LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred ccceEEEEEEec--c--eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecch
Confidence 999999999976 3 689999999999998810 00000
Q ss_pred --------------------------------------------------------------------------------
Q 002511 224 -------------------------------------------------------------------------------- 223 (914)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (914)
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNt 345 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNT 345 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCc
Confidence
Q ss_pred ----------------------EecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEec
Q 002511 224 ----------------------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 224 ----------------------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (914)
++.+|...|.++++|.+...+++|+ .+.+++|+..+.++++++... .+.+..|.|
T Consensus 346 v~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp 422 (888)
T KOG0306|consen 346 VEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVP 422 (888)
T ss_pred eEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecC
Confidence 1224555567777777665555554 457777777777777777654 566777777
Q ss_pred CCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEE
Q 002511 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKH 361 (914)
Q Consensus 282 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 361 (914)
.++++++|+.+|.+.++ ++. .... +..+..|+..+-+++.
T Consensus 423 gd~~Iv~G~k~Gel~vf---------------------------dla---------S~~l----~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVF---------------------------DLA---------SASL----VETIRAHDGAIWSISL 462 (888)
T ss_pred CCceEEEeccCCceEEE---------------------------Eee---------hhhh----hhhhhccccceeeeee
Confidence 77777777777776662 211 1111 1123567778889999
Q ss_pred CCCCCEEEEEc-CCcEEEEEeecccc-----------------cccCceeEEEEecCCcEEEEec-CCeEEEeccC----
Q 002511 362 NPNGRFVVVCG-DGEYIIYTALAWRN-----------------RSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN---- 418 (914)
Q Consensus 362 s~~g~~lav~~-~~~~~i~~~~~~~~-----------------~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~---- 418 (914)
+||++.+++++ |..+.+|+...-.. .-...+.++.+||||+|++++- |.+|+||-++
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF 542 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF 542 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee
Confidence 99999888887 99999997643211 1125678999999999988877 9999998643
Q ss_pred ---cccce--eeecCcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEE---EcceeEEEEcCCCCEEEEEeCCeEEEE
Q 002511 419 ---FQEKR--SVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRI---DVTVKNLYWADSGDLVAIASDTSFYIL 489 (914)
Q Consensus 419 ---~~~~~--~~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~---~~~i~~v~~s~dg~~la~~~~~~~~~~ 489 (914)
.-++. .+....||| +.++++|+.| +|++|-++-|.+-+.+ +..|.+|.|-|....+.++++|+.+..
T Consensus 543 flsLYGHkLPV~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eeeecccccceeEEeccCC----cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEe
Confidence 12222 222277888 9999999999 9999999988765544 458999999999999999999998876
Q ss_pred E
Q 002511 490 K 490 (914)
Q Consensus 490 ~ 490 (914)
|
T Consensus 619 W 619 (888)
T KOG0306|consen 619 W 619 (888)
T ss_pred e
Confidence 6
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.8e-34 Score=274.54 Aligned_cols=328 Identities=17% Similarity=0.262 Sum_probs=280.1
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
...|..|++.|.+++.+|+.+++++|+.|..-+||+..+|.....+.+|+..|+++.||.+|.+||+|+-+|.|+||...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
++.....+....+.|.-+.|||.+..|+.|+.||.+.+|.+.++ ...+++.+|..++++-.|.| ++..++++..||+|
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti 214 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTI 214 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccC-CCceEEEEecCceE
Confidence 99988888766778999999999999999999999999999987 67888999999999999999 89999999999999
Q ss_pred EEEECCCCCCcEEEecC-CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC--------cccc---eEEE
Q 002511 168 KIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--------HTHN---VSAV 235 (914)
Q Consensus 168 ~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~---v~~i 235 (914)
++|++.++++...+... .....++.++..+. .++.|+.++.+++-+..+|+.+....+ +... |-++
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~--~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGS--TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccc--eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 99999999999888633 34567788877766 788999999999998888887776652 2333 4555
Q ss_pred EEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEE
Q 002511 236 CFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (914)
Q Consensus 236 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~ 315 (914)
.++..-++.|+|+-||+|.|||+...++...+. |...|..+.|.+ ..+|++++.+|.|+.|..+... ..
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~---------l~ 361 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ---------LK 361 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccc---------eE
Confidence 666677899999999999999998877666555 447799999999 7899999999999997544322 11
Q ss_pred EEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002511 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (914)
.....|...|..++++|+++++++.+ |+...+|..
T Consensus 362 -------------------------------~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 -------------------------------FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred -------------------------------EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 11345666778888999988888887 777777654
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-34 Score=263.30 Aligned_cols=287 Identities=23% Similarity=0.373 Sum_probs=244.5
Q ss_pred cchhhhhcccCCCCEEEEEEcCC-CCEEEEEecCCcEEEEeCCCC---ceeEEe-eecCCCeEEEEEecCCCEEEEEECC
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPS-EPWILASLYSGTVCIWNYQSQ---TMAKSF-EVTELPVRSAKFVARKQWVVAGADD 78 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~-~~~la~~~~~g~v~iwd~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~d 78 (914)
++...+++++|.++|..++|||- |..||+++.|..|+||+...+ .+...+ .+|+..|++++|+|.|++|+++|.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 35667889999999999999998 889999999999999998743 333333 3589999999999999999999999
Q ss_pred CEEEEEECCC--CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC--CCceEEEEeecCcccEEEEEEccCC
Q 002511 79 MFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 79 g~i~vwd~~t--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (914)
.++.||.-.. .+++.++.+|...|.|++|+++|.+|++|+.|..|-||.+. ....+..++..|...|..+.|+| .
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t 161 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-T 161 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-C
Confidence 9999997653 46788999999999999999999999999999999999988 44567888999999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCC---CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccc
Q 002511 155 TNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN 231 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 231 (914)
..+|++++.|.+|++|+-.. -.+..++.+|...|.+++|.+.|. .|++++.|++++||...+.-. ..|...
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~--rl~s~sdD~tv~Iw~~~~~~~----~~~sr~ 235 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS--RLVSCSDDGTVSIWRLYTDLS----GMHSRA 235 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc--eEEEecCCcceEeeeeccCcc----hhcccc
Confidence 89999999999999998652 246788999999999999999887 599999999999998663211 236778
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEeCCCce------eE-EEeecCCccEEEEEEecC-CCEEEEEecCCeEEEEc
Q 002511 232 VSAVCFHPELPIIITGSEDGTVRIWHATTYR------LE-NTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 232 v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~------~~-~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~~ 299 (914)
++.+.|. + ..|++++.|+.|++|.....- ++ ..-..|...|+++.|.|. .++|++|++||.+.+|.
T Consensus 236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999999 4 479999999999999765421 11 123456678999999995 78999999999999984
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.7e-35 Score=308.78 Aligned_cols=242 Identities=23% Similarity=0.480 Sum_probs=228.9
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC-------------------------------CceeEEeeecCCCeEEE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-------------------------------QTMAKSFEVTELPVRSA 63 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~-------------------------------~~~~~~~~~~~~~v~~~ 63 (914)
...++|..|++|+..||.|..|..|++|.+.. ....+++-+|.+||...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 35699999999999999999999999998763 12335577899999999
Q ss_pred EEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcc
Q 002511 64 KFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH 143 (914)
Q Consensus 64 ~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 143 (914)
.|+|+.++|++++.|+++++|.+.+...+-.+++|..+|..+.|+|-|-|+++++.|++-++|..+.. .+.+++.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 78899999999
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE
Q 002511 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (914)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (914)
.|.|+.|+| +.+++++||.|.+|++||+.+|..++.+.+|.++|.+++|+|.|. +|++|+.||.|.+||+.+++.+.
T Consensus 537 DV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr--~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 537 DVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR--YLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc--eEeecccCCcEEEEEcCCCcchh
Confidence 999999999 899999999999999999999999999999999999999999887 99999999999999999999999
Q ss_pred EecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 224 TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 224 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
.+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 614 ~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999764
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.3e-33 Score=295.39 Aligned_cols=287 Identities=32% Similarity=0.558 Sum_probs=264.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
.+++.+|.++|++++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46778999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
+++.+..+..|...|.++.|++++.++++++.+|.|.+||++++ .....+..|...+.++.|+| ++.++++++.++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcE
Confidence 98888889999999999999999888888888999999999976 56666778888999999999 67888888889999
Q ss_pred EEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEE
Q 002511 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (914)
Q Consensus 168 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 247 (914)
++||+++++....+..+...+.++.|+|++. .+++++.++.|++||+++++.+..+..|...+.+++|+|++.+++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcC--EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 9999998888888888888999999999886 68888889999999999999988887888899999999998888888
Q ss_pred ECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
+.+|.|++|++.+++....+..+...+.+++|+|+++.+++++.||.+.+|
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 889999999999999988888888899999999999999999999999987
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=287.74 Aligned_cols=281 Identities=23% Similarity=0.381 Sum_probs=245.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (914)
..+|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|+++.|+++|.++++|+.+|.|++|+..-. ....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHH
Confidence 458999999999999999999999999998665555566799999999999999999999999999999998765 3333
Q ss_pred EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 137 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
....|...|.+++|+| ....|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++++.|..|++||.
T Consensus 175 ~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--LiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIASGSKDNLVKLWDP 251 (464)
T ss_pred hhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeEEccCCceeEeecC
Confidence 4444558999999999 788999999999999999999999999999999999999999876 8999999999999999
Q ss_pred CCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecC-CCEEEEEecCCeE
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTI 295 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i 295 (914)
+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.+++.|...++++.|+|- ...+++|+.||.+
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999996 4678889999999
Q ss_pred EEEcCC-CcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-C
Q 002511 296 MVKIGR-EEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-D 373 (914)
Q Consensus 296 ~i~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~ 373 (914)
..|.-. +.|+..+ -..++..|.+++|+|=|.+|+.++ |
T Consensus 332 vh~~v~~~~p~~~i----------------------------------------~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEI----------------------------------------PPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred EEEeccccccccCC----------------------------------------CcccccceeeeeccccceeEeecCCC
Confidence 997433 2222111 134556778899999999999988 7
Q ss_pred CcEEEEEe
Q 002511 374 GEYIIYTA 381 (914)
Q Consensus 374 ~~~~i~~~ 381 (914)
..+.+|..
T Consensus 372 ~t~rfw~r 379 (464)
T KOG0284|consen 372 RTVRFWTR 379 (464)
T ss_pred cceeeecc
Confidence 77777743
No 37
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=9.9e-33 Score=284.06 Aligned_cols=698 Identities=14% Similarity=0.192 Sum_probs=410.2
Q ss_pred chhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEE
Q 002511 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (914)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (914)
..+..++++|.+.|.|++|+.||+.+|+|+.|..|.||+-+-... ..+ .|...|.|+.|+|-...|++++-+ ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 356678999999999999999999999999999999999543222 223 389999999999999999998764 36688
Q ss_pred ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce-EEEEeecCcccEEEEEEccCC----CCEEE
Q 002511 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKD----TNTFA 159 (914)
Q Consensus 85 d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~----~~~l~ 159 (914)
........ .. .....+.+++|+.||++++.|-.+|+|.+-+-..... ......+...+|.+++|+|.. ...++
T Consensus 120 S~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 87643222 21 2345788999999999999999999999987554322 222334567899999999943 35788
Q ss_pred EEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeC
Q 002511 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 160 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 239 (914)
+.....++.+|.+.. +.+..-+...-...|+.+.++|. |++.|+.|+.+.+|. +.|-.+-++......|++++..|
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGE--y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGE--YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCc--EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence 899999999999854 33332233344557999999988 899999999999997 55777888877888999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceeEEEeecC---CccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEE
Q 002511 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIW 316 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~ 316 (914)
+++.++.|+.||+|..|++............ ....+.+-. +.+.++ ..++|........+++. ..++..
T Consensus 274 NsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDViv----QhLi~~---qkvrIkC~DLVkKiaiY-rnrLAV 345 (1081)
T KOG1538|consen 274 NSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIV----QHLITE---QKVRIKCKDLVKKIAIY-RNRLAV 345 (1081)
T ss_pred CCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHH----HHHhhc---ceeeeeHHHHHHHHHhh-hhhhee
Confidence 9999999999999999987532211110000 000000000 001111 11122111111111111 112333
Q ss_pred EeeCcEEEEEeeecccceeccCCceeeee--eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec-----cccccc
Q 002511 317 AKHNEIQTVNIKSVGADYEVTDGERLPLA--VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA-----WRNRSF 389 (914)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~-----~~~~~~ 389 (914)
.....+.++.+. +++.-++. +++--......+-+. -.++++++|.+.++.-++... |...++
T Consensus 346 QLpeki~iYel~---------se~~~~mhY~v~ekI~kkf~cSLlV--Vc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~ 414 (1081)
T KOG1538|consen 346 QLPEKILIYELY---------SEDLSDMHYRVKEKIIKKFECSLLV--VCANHIVLCQEKRLQCLDFSGVKEREWQMESL 414 (1081)
T ss_pred cccceEEEEecc---------ccccccchhHHHHHHHhhccceEEE--EEcCeEEEEcccceeeecccchhhhhhhHHHH
Confidence 333444444432 22211111 111000001111111 234678888888888887654 333333
Q ss_pred CceeEEEEecCCc--EEEEecCCe-EEEeccCcc-------cceeeec-CcccceeecCcEEEEEeCC-eEEEEeccCCc
Q 002511 390 GSALEFVWSSDGE--YAVRESSSK-IKIFSKNFQ-------EKRSVRP-TFSAERIYGGTLLAMCSND-FICFYDWAECR 457 (914)
Q Consensus 390 ~~~~~~~~s~~~~--~l~~~~~~~-i~v~~~~~~-------~~~~~~~-~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~ 457 (914)
..-..+.-.|-|+ +++...+|. .+|| ++.. ....+++ .++.. .+.||+..++ +..+||+.+++
T Consensus 415 iRYikV~GGP~gREgL~vGlknGqV~kiF-~dN~~PiLl~~~~tAvrClDINA~----R~kLAvVDD~~~c~v~DI~t~e 489 (1081)
T KOG1538|consen 415 IRYIKVIGGPPGREGLLVGLKNGQVLKIF-VDNLFPILLLKQATAVRCLDINAS----RKKLAVVDDNDTCLVYDIDTKE 489 (1081)
T ss_pred HHhhhhhcCCCCcceeEEEecCCcEEEEE-ecCCchhheecccceeEEeeccCC----cceEEEEccCCeEEEEEccCCc
Confidence 2223333345553 444445544 5566 3321 1112222 45555 7789998877 99999999999
Q ss_pred EEEEEEcceeEEEEcC-CCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCEEE
Q 002511 458 LIRRIDVTVKNLYWAD-SGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFI 536 (914)
Q Consensus 458 ~i~~~~~~i~~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i 536 (914)
.+.. +..+.+|.||. ...++++.+..++.+-- .+|+.-.+ +.. | |+
T Consensus 490 lL~Q-Epg~nSV~wNT~~E~MlcfT~~g~L~VR~----------------------~~~P~h~q---k~~-G------~V 536 (1081)
T KOG1538|consen 490 LLFQ-EPGANSVAWNTQCEDMLCFTGGGYLNVRA----------------------STFPVHRQ---KLQ-G------FV 536 (1081)
T ss_pred eEee-cCCCceEEeeccccceEEEecCCceEEEe----------------------ccCCcchh---cce-E------EE
Confidence 8776 45789999995 45677777665544411 01222100 000 0 22
Q ss_pred EEccCCeEEEEECCEEeEEEecccce--EEE-----EEeecCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhh
Q 002511 537 YNNSSWRLNYCVGGEVTTMFHLDRPM--YLL-----GYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE 609 (914)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~ 609 (914)
..-..+++ ||.-+. .+..++-|. .+. +.++.--++.|.. +.. -+...+ .+.++...+|+.|..
T Consensus 537 vG~~gsk~-FCL~~~--~i~~~evp~~~~m~q~Ieag~f~ea~~iaclg----Vv~--~DW~~L-A~~ALeAL~f~~ARk 606 (1081)
T KOG1538|consen 537 VGYNGSKI-FCLHVF--SISAVEVPQSAPMYQYIERGLFKEAYQIACLG----VTD--TDWREL-AMEALEALDFETARK 606 (1081)
T ss_pred EEecCceE-EEEEee--eeecccccccccchhhhhccchhhhhcccccc----eec--chHHHH-HHHHHhhhhhHHHHH
Confidence 22221221 111000 011111100 000 1111111121110 000 000000 022222333333322
Q ss_pred hcCCCCcchHH-------------------HHHHHHHhCCChhhhhhc---ccCcccceeeecccCCHHHHHHHHHHcCC
Q 002511 610 ILPSIPKEHHN-------------------SVARFLESRGMIEEAIEV---ATDPDYRFELAIQLGRLEVAQEIATEVQS 667 (914)
Q Consensus 610 ~l~~i~~~~~~-------------------~~~~~~~~~~~~~~a~~~---~~~~~~~f~~~l~l~~~~~A~~~a~~~~~ 667 (914)
.+..+..-.+- ..+..+--.|.+.+|-.+ +.....++||+-++.++|.|.+.......
T Consensus 607 AY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 607 AYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 22111110000 001111112222222222 22333445899999999999999987766
Q ss_pred hH---HHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcC---------------CHHHHHHHHHHHHHcCCchHH
Q 002511 668 ES---KWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLG---------------DAEGISKLASLAKEQGKNNVA 729 (914)
Q Consensus 668 ~~---~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g---------------~~~~~~~~a~~a~~~~~~~~a 729 (914)
++ +-++=|+.|-...+-..|.+++..+|+..+++.+..-.| +.+.+..++.........-+|
T Consensus 687 ~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchH
Confidence 44 445567777788888888888888888777766544333 344566777777888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002511 730 FLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (914)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~ 779 (914)
..+|..+||...-++|.+..++|++|..+|..| |+.++.+.-.|.++|.
T Consensus 767 aeIF~k~gD~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 767 AEIFLKMGDLKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHhccHHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhh
Confidence 999999999999999999999999999999987 6777777666666654
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=307.48 Aligned_cols=289 Identities=26% Similarity=0.457 Sum_probs=262.4
Q ss_pred hhhcccC-CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc--eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEE
Q 002511 8 KRKLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (914)
Q Consensus 8 ~~~l~~h-~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (914)
...+.+| ...|+++.|+|+|.++++++.++.+++|+..+.+ ..+.+.+|...|++++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3344444 7899999999999999999999999999997777 777788899999999999999999999999999999
Q ss_pred EC-CCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 85 NY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 85 d~-~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
|+ ..+..++++.+|...|++++|+|+|+++++|+.|++|+|||++++ .+...+.+|...|.+++|++ +++.|++++.
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~ 308 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP-DGNLLVSASY 308 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC-CCCEEEEcCC
Confidence 99 566889999999999999999999999999999999999999997 89999999999999999999 9999999999
Q ss_pred CCcEEEEECCCCC--CcEEEecCCCC--eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccc---eEEEE
Q 002511 164 DRTIKIWNLGSPD--PNFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN---VSAVC 236 (914)
Q Consensus 164 dg~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~i~ 236 (914)
|+.|++||+.++. +...+..+... +++++|+|++. ++++++.|+.+++||+..+.++..+.+|... +.+..
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCc--EEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 9999999999988 45666665554 99999999988 8999999999999999999999999988774 44455
Q ss_pred EeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC-CccEEEEEEecCCCEEEEEe--cCCeEEEEcC
Q 002511 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSRRIVIGY--DEGTIMVKIG 300 (914)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~--~dg~i~i~~~ 300 (914)
.++.+.++++|+.|+.|++||+.++..+..+..| ...+..+.++|..+++++++ .|+.+++|..
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 6789999999999999999999999999999999 88999999999999999988 7888888843
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-34 Score=276.90 Aligned_cols=292 Identities=18% Similarity=0.277 Sum_probs=250.1
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC---ceeEEeeecCCCeEEEEEecCCCEEEEEECCCE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVARKQWVVAGADDMF 80 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 80 (914)
..+-.+.+..|++.|.-+.||++|++||+++.|.+..||.+... +..+++.+|..+|..+.||||.++|++++.+..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 34556788999999999999999999999999999999987654 457888899999999999999999999999999
Q ss_pred EEEEECCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-CcccEEEEEEccCCCCEE
Q 002511 81 IRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 81 i~vwd~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l 158 (914)
+.+||..+|.....+. +|...+.+++|.|||..+++|+.|++|..||++.. . .....+ ....|.+++.++ |+..+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~-~~~W~gvr~~~v~dlait~-Dgk~v 369 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-I-LGNWEGVRDPKVHDLAITY-DGKYV 369 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-h-hhcccccccceeEEEEEcC-CCcEE
Confidence 9999999999988775 35678999999999999999999999999999875 2 222222 235689999999 89999
Q ss_pred EEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccc--eEEEE
Q 002511 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN--VSAVC 236 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i~ 236 (914)
++.+.|..|++++..+..... +.....+|++.+++.++. ++++.-.+..+.+||+.....+..+.||... +..-|
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k--~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGK--LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred EEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCc--EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 999999999999987654433 334567899999988877 8888889999999999988888888888765 33445
Q ss_pred EeC-CCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCC-CEEEEEecCCeEEEEcCC
Q 002511 237 FHP-ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 237 ~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i~~~~ 301 (914)
|-. +..++++||+|+.|+||+..+++++.++.+|...|.+++|+|.. .++|++++||+|+||-..
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 654 44799999999999999999999999999999999999999965 578999999999999543
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-33 Score=252.52 Aligned_cols=267 Identities=19% Similarity=0.344 Sum_probs=234.2
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc--eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
.++++...+.|..+.+.|+++.||+++ .-.|++||++++. ++.+|.+|...|+++.|..+|+++++|+.||+++|||
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWd 111 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWD 111 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEe
Confidence 345555566899999999999999988 5679999999874 5788999999999999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+....-..........+|.++...| ++.+++.+...|
T Consensus 112 lR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG 189 (311)
T KOG0315|consen 112 LRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKG 189 (311)
T ss_pred ccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-CCcEEEEecCCc
Confidence 99866666665 6799999999999999999999999999999987333334444557899999999 999999999999
Q ss_pred cEEEEECCCC------CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-ceEEEecCcccceEEEEEe
Q 002511 166 TIKIWNLGSP------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFH 238 (914)
Q Consensus 166 ~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~ 238 (914)
+.++|++-+. .|+.+++.|.+.+..+.+||++. +|++++.|.+++||+..+. +....+.+|...++..+||
T Consensus 190 ~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 190 NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred cEEEEEccCCCccccceEhhheecccceEEEEEECCCCc--EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 9999998654 35667789999999999999988 8999999999999999887 6667788999999999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEE
Q 002511 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (914)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (914)
.+|.+|++|+.|+.+++|++..++.+....+|.....+++.
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999988776666654
No 41
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3e-31 Score=265.54 Aligned_cols=435 Identities=19% Similarity=0.313 Sum_probs=319.3
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEecCC--------cEEEEeCCCCceeEEeeecCCCeEEEEEec--CCCEEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSG--------TVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAG 75 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g--------~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g 75 (914)
+.+|.+.+|...|.|++.|||.-.+++|...| .|+|||..+-..+..+...+..|.|++||+ .|..|...
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 45788899999999999999999999876655 499999888888888887888999999998 35666555
Q ss_pred E--CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecC-cccEEEEEE
Q 002511 76 A--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGH-SHYVMQVTF 150 (914)
Q Consensus 76 ~--~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~-~~~i~~~~~ 150 (914)
. .+..+.|||+..+......+..+..|....|+|.++.+++....|.+.+|+++++....+ +++.+ ...|.|++|
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3 356899999998888888887888899999999988888777889999999998733222 33332 367999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc----------
Q 002511 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---------- 220 (914)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------- 220 (914)
.+ + .-+++|..+|.|.||+..+.+..+....|.++|.+++...+|. |++|+.|+.|..||-.-.+
T Consensus 255 ~e-n-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt---llSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 255 LE-N-GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT---LLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred cC-C-CCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc---EeecCccceEEeccccccccccccCchhc
Confidence 98 4 4588999999999999988777777779999999999998885 8889999999999832110
Q ss_pred -eE-----------------------------EEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC
Q 002511 221 -CV-----------------------------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 221 -~~-----------------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (914)
.+ ....+|....+.++.+|+.+.+++++.|+.+++|+ ..+++.+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 00 02235666778888888888888888888888888 44555554433
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecC
Q 002511 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELG 350 (914)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (914)
.+..++.|+|.| .+++|+..|...+-.........+ .
T Consensus 408 -d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~-----------------------------------------~ 444 (626)
T KOG2106|consen 408 -DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI-----------------------------------------H 444 (626)
T ss_pred -CceeEeeccCcc-eEEEeeccceEEEEecccceeEEE-----------------------------------------E
Confidence 667888888888 888888888777621111111000 1
Q ss_pred CcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-------ccCceeEEEEecCCcEEEEec-CCeEEEeccCc-c
Q 002511 351 TCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-------SFGSALEFVWSSDGEYAVRES-SSKIKIFSKNF-Q 420 (914)
Q Consensus 351 ~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~-~ 420 (914)
.+..+++.++|+|+|.+||+++ |+.+++|.+.....+ +-..++.+.||+|++|+++.+ |-.|-.|.... +
T Consensus 445 ~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 445 TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 1133567899999999999999 999999977654322 125789999999999999999 77888885221 1
Q ss_pred c---ceeeec-------Ccc----cce--ee------cCcEEEEEeCC-eEEEEeccCCcEEEE------EEcceeEEEE
Q 002511 421 E---KRSVRP-------TFS----AER--IY------GGTLLAMCSND-FICFYDWAECRLIRR------IDVTVKNLYW 471 (914)
Q Consensus 421 ~---~~~~~~-------~~s----~~~--i~------~g~~La~~~~~-~i~~~d~~~~~~i~~------~~~~i~~v~~ 471 (914)
. .+.+.+ .|. .++ +. ..++||+++.. +|++|...-.++... +...|++|+|
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF 604 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE
Confidence 1 111111 111 110 00 36789999887 999998765443322 2247999999
Q ss_pred cCCCCEEEEEeCCeEEEEE
Q 002511 472 ADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 472 s~dg~~la~~~~~~~~~~~ 490 (914)
..+...+.+.+.|..++-|
T Consensus 605 l~~d~~li~tg~D~Si~qW 623 (626)
T KOG2106|consen 605 LCKDSHLISTGKDTSIMQW 623 (626)
T ss_pred eeCCceEEecCCCceEEEE
Confidence 9776666666666655443
No 42
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-33 Score=250.46 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=253.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
.+.+..|.++|.++.|+-||+|.++++.|.+|++||...|.+++++.+|...|..++.+.|...+++|+.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC-ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
||+.++.+.+|.+.|+.+.|+.+...+++|+.|..+++||.++. ..+.+++......|.++..+ +..+++|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 99999999999999999999999999999999999999999864 35677888788889999986 578999999999
Q ss_pred EEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceE--EEEEeCCCCEE
Q 002511 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS--AVCFHPELPII 244 (914)
Q Consensus 167 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~--~i~~~~~~~~l 244 (914)
++.||++.++.... ....+|+|++|+++++ ..++++.|+++++.|-.+|+.+...++|...-. ..+++.....+
T Consensus 167 vRtydiR~G~l~sD--y~g~pit~vs~s~d~n--c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD--YFGHPITSVSFSKDGN--CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehh--hcCCcceeEEecCCCC--EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 99999999875443 3457899999999998 799999999999999999999999999976533 45667777799
Q ss_pred EEEECCCeEEEEeCCCceeEEEeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002511 245 ITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
++|++||.|++||+.....+..+..+... +.++++.|.-..+.++...+.+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFW 296 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceece
Confidence 99999999999999999999988888776 899999999888888776555443
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-33 Score=298.38 Aligned_cols=244 Identities=25% Similarity=0.486 Sum_probs=228.8
Q ss_pred EeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC-------------------------------eeeEEEecCCC
Q 002511 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-------------------------------DKVKVFEAHTD 100 (914)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~-------------------------------~~~~~~~~~~~ 100 (914)
++......++|..|++|++.||.|..|..|++|.+... ....++.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 34445567999999999999999999999999988631 12345678999
Q ss_pred CEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEE
Q 002511 101 YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (914)
Q Consensus 101 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 180 (914)
+|....|+|+.++|++|+.|+++++|.+++. .+...+.+|..+|+.+.|+| .+-+|++++.|++-++|......+.+.
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~-s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccc-eeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999997 78888899999999999999 899999999999999999999999999
Q ss_pred EecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 181 LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
+.+|...|.|+.|+|+.. |+++|+.|.+|++||..+|..++.|.||.++|++++|||+|++|++|+.||.|++||+.+
T Consensus 531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 999999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 261 YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 261 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
++++..+..|.+.|.++.|+.+|..||+|+.|..|++|.
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 999999999999999999999999999999999999994
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=265.17 Aligned_cols=289 Identities=18% Similarity=0.215 Sum_probs=252.5
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEEC
Q 002511 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (914)
..-.+.+|++.|+++.||.+|.+||+|.-+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34567899999999999999999999999999999999999988888766677899999999999999999999999999
Q ss_pred CCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 87 NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 87 ~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
.++...+.+.+|..++++-.|.|+|++++++..||+|++||+.++......-........++.++. .+..++.|+.++.
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCcc
Confidence 998889999999999999999999999999999999999999999544444333345567888887 7889999999999
Q ss_pred EEEEECCCCCCcEEEe--------cCCCCeeEEEEeeCCC-cCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEE
Q 002511 167 IKIWNLGSPDPNFTLD--------AHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (914)
Q Consensus 167 i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 237 (914)
+++.+..+++.+.... .+...+.|+.+.|... -++.++|+-||+|.|||+...+..+.+. |...|+.+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEE
Confidence 9998888877665554 3455566666665432 3478899999999999998766655554 8889999999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
-+ ..+|++++.+|.|+.||.++|++..++.+|...|.+++++|+.++++++++|++..++
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence 99 6799999999999999999999999999999999999999999999999999998874
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=262.97 Aligned_cols=249 Identities=24% Similarity=0.404 Sum_probs=231.9
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
+.+.+.+|.+.|+|+++.|...+|++|+.|++|.|||+.+|+...++.+|...|+.+++|+-.+|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (914)
+.. +.++.+.+|-+.|.|++.+| .-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.|... .+++|+.|
T Consensus 223 e~n-kvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--qvit~S~D 298 (460)
T KOG0285|consen 223 EYN-KVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--QVITGSHD 298 (460)
T ss_pred hhh-hhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--ceEEecCC
Confidence 987 77788889999999999999 788999999999999999999999999999999999999987655 59999999
Q ss_pred CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEE
Q 002511 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (914)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (914)
++|++||++.|+...++..|...+.+++.+|....+++++.| .|+.|++..|..+..+..|..-+.+++...|+ ++++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 999999999999999999999999999999999999999987 79999999999998899999999999998875 7889
Q ss_pred EecCCeEEEEcCCCc
Q 002511 289 GYDEGTIMVKIGREE 303 (914)
Q Consensus 289 ~~~dg~i~i~~~~~~ 303 (914)
|+++|.+.+|.-+..
T Consensus 377 G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSG 391 (460)
T ss_pred cCCceEEEEEecCcC
Confidence 999999999854443
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=265.19 Aligned_cols=283 Identities=21% Similarity=0.338 Sum_probs=257.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee--------ecCCCeEEEEEecCCCEEEEEECCCEEEEE
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--------VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (914)
+..+-+-|..|||||++|++|+.||-|.+||+.+|+..+.++ .++.+|.|+.||.|...+++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445668899999999999999999999999999997665443 477899999999999999999999999999
Q ss_pred ECCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 85 NYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 85 d~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
.+.+|.+++.|. +|+..|+|+.|+.|+..+++++.|.++++.-+.++ ++.+.+.+|++.|+...|.+ +++.+++++.
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGHsSyvn~a~ft~-dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGHSSYVNEATFTD-DGHHIISASS 368 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCccccccceEEcC-CCCeEEEecC
Confidence 999999999997 89999999999999999999999999999999998 88889999999999999999 9999999999
Q ss_pred CCcEEEEECCCCCCcEEEec--CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc---ccceEEEEEe
Q 002511 164 DRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH---THNVSAVCFH 238 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~ 238 (914)
||+|++|+..+.++..+++. ...+|+++...|.+.. .++++...++|+|.+++ |+.++++... .+...+.+.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe-h~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE-HFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc-eEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 99999999999988877753 4567888888887644 78999999999999987 8888887642 3456778899
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
|.|.++.+.++|+.++.|...+|++..++..|...+..++-+|..+.+|+-+.||.+.+|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999883
No 47
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.6e-31 Score=243.97 Aligned_cols=291 Identities=24% Similarity=0.358 Sum_probs=237.0
Q ss_pred eeEEeeecCCCeEEEEEecC-CCEEEEEECCCEEEEEECCCC---eeeEEE-ecCCCCEEEEEEeCCCCEEEEEEcCCeE
Q 002511 49 MAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTM---DKVKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~t~---~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i 123 (914)
.++.+++|.+++..++|+|- |..||+|+.|..|++|+...+ .+...+ .+|...|++++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678889999999999998 889999999999999998853 333333 4799999999999999999999999999
Q ss_pred EEEECCC-CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC---CcEEEecCCCCeeEEEEeeCCCc
Q 002511 124 KLWDWEK-GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDK 199 (914)
Q Consensus 124 ~iwd~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~ 199 (914)
.||.-.. ...+...+++|...|.+++|++ ++++|++|+.|+.|-||.+..+. +...+..|...|..+.|+|..+
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED- 163 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-
Confidence 9997653 3577889999999999999999 99999999999999999987543 4567789999999999999877
Q ss_pred CEEEEEEcCCeEEEEECC---CCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEE
Q 002511 200 PYLITGSDDHTAKVWDYQ---TKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (914)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (914)
+|++++.|.+|++|+-. ...+++++.+|...|.+++|+|.|..|++++.|++|+||...+.- -..|...++.
T Consensus 164 -lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 -LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred -eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 89999999999999866 346899999999999999999999999999999999999855221 1234577899
Q ss_pred EEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002511 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (914)
Q Consensus 277 i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (914)
+.|. ...|++++.|+.|+++..... +++....+..+.-..|+..|
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~---------------------------------~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDS---------------------------------PDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCC---------------------------------CCCchHHHHHhhhccccccc
Confidence 9998 457999999999998532211 11111222222235667788
Q ss_pred ceEEECCC-CCEEEEEc-CCcEEEEEe
Q 002511 357 QSLKHNPN-GRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 357 ~~l~~s~~-g~~lav~~-~~~~~i~~~ 381 (914)
.+++|+|. ...|++++ ||.+.+|..
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEe
Confidence 99999994 44666666 788888864
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=280.45 Aligned_cols=288 Identities=21% Similarity=0.391 Sum_probs=255.8
Q ss_pred hhhhhcccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCC-CceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
.+.+.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.++++|.+|..+|+.++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 55678899999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
||++||+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||++++ .+.+.+..|-+.|..+.|-+ ++..|++.+
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~-~g~rFissS 361 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVD-EGRRFISSS 361 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEcc-CCceEeeec
Confidence 99999999999874 4578999999998 78889999999999999998 67788888999999999999 899999999
Q ss_pred CCCcEEEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC---ceEEEecCccc--ceEEEE
Q 002511 163 LDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTH--NVSAVC 236 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~--~v~~i~ 236 (914)
.|++++||+.+.+.++... ........|+..+|++. ++++-+.|+.|.++.+... .....+.+|.. .-..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~--~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK--WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCC--eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887766443 33445667888888877 8999999999999987542 22345666654 356788
Q ss_pred EeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecC-CCEEEEEecCCeEEEE
Q 002511 237 FHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMVK 298 (914)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i~ 298 (914)
|||||.+|++|+.||.+.+||.++-+++..+..|.+.+..+.|+|. ...+|+++-+|.|.+|
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 9999999999999999999999999999999999999999999997 4578999999999997
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=251.80 Aligned_cols=286 Identities=19% Similarity=0.319 Sum_probs=243.1
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEEC-CCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
.+..+.+|++.|..+.|+|+|.+|++|+.|..|.+|+. ...+....+++|++.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34456789999999999999999999999999999995 44456777889999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
.+++ +....+.+|...+.++.-+..+..++.+++.|+++++||+++...++++. .+..++++.|...++ -+++|+-
T Consensus 119 ~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~--qv~sggI 194 (338)
T KOG0265|consen 119 AETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD--QVISGGI 194 (338)
T ss_pred cccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc--ceeeccc
Confidence 9999 77888889999999988655566788899999999999999988877764 467789999998887 4999999
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc----eeEEEeecCC----ccEEEEEE
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL----ERVWAIGY 279 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~----~~v~~i~~ 279 (914)
|+.|++||++.+....++.+|..+|+.+..+|+|.++++-+.|.++++||++.. +++..+.++. .....++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999999999999999999999999999999999998754 3456665542 23567899
Q ss_pred ecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceE
Q 002511 280 MKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSL 359 (914)
Q Consensus 280 ~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l 359 (914)
+|+++.+.+|+.|..+++|...... ++ ..++++...|..+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~---------~l-------------------------------yklpGh~gsvn~~ 314 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRR---------IL-------------------------------YKLPGHYGSVNEV 314 (338)
T ss_pred cCCCCccccccccceEEEeeccccc---------EE-------------------------------EEcCCcceeEEEe
Confidence 9999999999999999997433221 11 1246677778899
Q ss_pred EECCCCCEEEEEc-CCcEEE
Q 002511 360 KHNPNGRFVVVCG-DGEYII 378 (914)
Q Consensus 360 ~~s~~g~~lav~~-~~~~~i 378 (914)
.|+|...+|..|+ |.++.+
T Consensus 315 ~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eecCCCcEEEEeccCceeEe
Confidence 9999999998887 655543
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=8e-34 Score=270.66 Aligned_cols=274 Identities=26% Similarity=0.449 Sum_probs=242.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
.+..|.|+.+. ...+++|..|++|+|||..+..+.+.+.+|.+.|.|+.|. .+.|++|++|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 45679999886 4558999999999999999999999999999999999985 4599999999999999999999999
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--eEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
++-.|...|..+.|+ +.++++++.|.+|.+||+.... .+...+.+|...|..+.|+ ..++++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEe
Confidence 999999999999998 4589999999999999998652 3345678999999999996 46999999999999999
Q ss_pred CCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCC
Q 002511 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (914)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 251 (914)
+.+.+.+.++.+|..+|.|+.+. +.++++|++|.+|++||+..|.++..+++|..-|.++.|.. +.+++|+.||
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDG 420 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDG 420 (499)
T ss_pred ccceeeehhhhcccccceehhcc----CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeeccccc
Confidence 99999999999999999999983 33899999999999999999999999999999999999965 5799999999
Q ss_pred eEEEEeCCCce---------eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcc
Q 002511 252 TVRIWHATTYR---------LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP 304 (914)
Q Consensus 252 ~v~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~ 304 (914)
+|++||+.++. ++.++..|.++|..+.| |...+++++.|.+|.+|..-..+
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 99999998764 23455667889999999 56789999999999998644433
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=263.76 Aligned_cols=289 Identities=25% Similarity=0.372 Sum_probs=256.7
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
+...+.+|..+|+.+.|+|+-..+++++.|++|++||..+++....+++|.+.+..+.|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (914)
.+...+.+...+|...|.+++|-| .++++++++.|.+|+.|++.++-++.++.+|..-|..++.+.+|. ++++++.|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i~As~s~d 256 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--IIASCSND 256 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--EEEecCCC
Confidence 986678888889999999999999 789999999999999999999999999999999999999887776 89999999
Q ss_pred CeEEEEECCCCceEEEecCcccceEEEEEeCC---------------CCEEEEEECCCeEEEEeCCCceeEEEeecCCcc
Q 002511 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE---------------LPIIITGSEDGTVRIWHATTYRLENTLNYGLER 273 (914)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 273 (914)
.+|++|-+.++++...++.|..+|-+++|-|. ++++.+++.|++|++||+.++.++.++.+|...
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 99999999999999999999999999999773 258999999999999999999999999999999
Q ss_pred EEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcc
Q 002511 274 VWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD 353 (914)
Q Consensus 274 v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 353 (914)
|..++|+|.|++|+++.+|+++++|..+ .+++. +.+..++
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~------------------------------------~~~cm----k~~~ah~ 376 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLK------------------------------------NLQCM----KTLEAHE 376 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEec------------------------------------cceee----eccCCCc
Confidence 9999999999999999999999997322 22221 1234566
Q ss_pred cCCceEEECCCCCEEEEEc-CCcEEEEE
Q 002511 354 LYPQSLKHNPNGRFVVVCG-DGEYIIYT 380 (914)
Q Consensus 354 ~~~~~l~~s~~g~~lav~~-~~~~~i~~ 380 (914)
..++++.|..+..++++|+ +..+.+|.
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceeEEEecCCCCceEEeccccceeeeee
Confidence 6777888887777777776 66666553
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.2e-30 Score=311.48 Aligned_cols=283 Identities=19% Similarity=0.269 Sum_probs=241.2
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC----c----eeEEeeecCCCeEEEEEec-CCCEEEEEECCCEE
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----T----MAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFI 81 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~----~----~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i 81 (914)
+..|.+.|.+++|+|+|.+||+|+.||.|+||+..+. . ....+. +...+.+++|+| ++.+|++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997542 1 122233 356799999987 47899999999999
Q ss_pred EEEECCCCeeeEEEecCCCCEEEEEEeC-CCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE
Q 002511 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (914)
++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||++++ .....+..+ ..+.++.|++.++..|++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 9999999999999999999999999997 7889999999999999999987 455555544 578999997658999999
Q ss_pred EeCCCcEEEEECCCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC------CceEEEecCcccceE
Q 002511 161 ASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVS 233 (914)
Q Consensus 161 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~ 233 (914)
|+.||.|++||+++.+ +...+.+|...|.++.|. ++. ++++++.|++|++||++. ..++..+.+|...+.
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~--~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~ 712 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS--TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN 712 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC--EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee
Confidence 9999999999998765 567788999999999997 344 799999999999999974 357888999999999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEe-------------ecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTL-------------NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
+++|+|++++|++|+.||.|++|+.........+ ..+...|.+++|+|++..|++|+.+|.|.+|.
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999999998765433222 12335699999999999999999999999973
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-33 Score=253.93 Aligned_cols=290 Identities=18% Similarity=0.280 Sum_probs=265.8
Q ss_pred hhhhcccCCCCEEEEEEcC---CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 7 IKRKLAQRSERVKSVDLHP---SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp---~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
...+..||+.+|..++||| +|-+|++++.||.-.+-+-++|..+-+|.+|.+.|.+...+.+-..-++++.|-+-+|
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3345679999999999997 7889999999999999999999999999999999999999999888999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
||.-+|..+..|. |..-|..++|+.|.++|++|+.+..++|||++........+.+|++.|..+.|.. ..+.+++++.
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeecc
Confidence 9999999999987 7888999999999999999999999999999988788888999999999999998 7788888899
Q ss_pred CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCE
Q 002511 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
|++|++||.++++.+.++. ...+|+++.++++|+ +++....+.|.+||..+...++.++ ....|.+.+++|+...
T Consensus 164 d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~---ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR---ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEF 238 (334)
T ss_pred CCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC---EEEEecCceeEEeccccccceeecc-CccccccccccCCCce
Confidence 9999999999999998887 568899999999997 7777778899999999988888877 4567999999999999
Q ss_pred EEEEECCCeEEEEeCCCceeEEEe-ecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCc
Q 002511 244 IITGSEDGTVRIWHATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREE 303 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~ 303 (914)
+++|++|+.++.||..++..+..+ ..|.++|.++.|+|+|...++|+.||+|++|.....
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999999999999999999988885 788999999999999999999999999999965444
No 54
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-28 Score=254.59 Aligned_cols=424 Identities=14% Similarity=0.194 Sum_probs=313.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-eeEEeeec-CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
....|+++||+.+.+.||++-.+|.|-||++..+- ....+.++ +..|.+++|++ +..|++.+-+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 45789999999999999999999999999998763 33455554 56899999995 45688888999999999999999
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE-EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
...+....+.|.+++.+|.+..+++|++||.+..++...+.... ..+...+++|.+++|+| ++..++.|+.||.|++|
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEE
Confidence 99999999999999999999999999999988888877763322 34455678999999999 88889999999999999
Q ss_pred ECCCCCCcEEEe--------cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCC
Q 002511 171 NLGSPDPNFTLD--------AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELP 242 (914)
Q Consensus 171 d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 242 (914)
|..++....... ....-|+++.+-.++ .|++|.+-|+|++||...+..++.+..|...|.+++..+++.
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 999887665221 122345677776555 599999999999999999999999999999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCcee----EEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEe
Q 002511 243 IIITGSEDGTVRIWHATTYRL----ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAK 318 (914)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~ 318 (914)
++++++.|+.|..|...+... ......|...+.+++..++ .+++|+.|+.+.+-..+..+....
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h---------- 326 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDH---------- 326 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhh----------
Confidence 999999999999998776643 2233456678999999877 899999999998842222110000
Q ss_pred eCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecc--------------
Q 002511 319 HNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAW-------------- 384 (914)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~-------------- 384 (914)
. .......-..+...|..+++.......+.+|.....
T Consensus 327 ---------------------~--------~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 327 ---------------------R--------QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred ---------------------h--------ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheee
Confidence 0 000000111344455555566665666666654433
Q ss_pred cccccCceeEEEEecCCcEEEEecCCeEEEeccCcccceeee-c-------------CcccceeecCcEEEEEeCC--eE
Q 002511 385 RNRSFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVR-P-------------TFSAERIYGGTLLAMCSND--FI 448 (914)
Q Consensus 385 ~~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~-~-------------~~s~~~i~~g~~La~~~~~--~i 448 (914)
..+....+.+.+.||+|++++...-.+++||.++........ . .|+.+ +..+..++.+ .+
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid----~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTID----KNKLFLVSKNIFSL 453 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEec----CceEEEEeccccee
Confidence 122335678889999999999988777888876543311111 0 23333 6666666644 77
Q ss_pred EEEeccCCcE--EEEEE-----cceeEEEEcCCCCEEEEEeCCeEE
Q 002511 449 CFYDWAECRL--IRRID-----VTVKNLYWADSGDLVAIASDTSFY 487 (914)
Q Consensus 449 ~~~d~~~~~~--i~~~~-----~~i~~v~~s~dg~~la~~~~~~~~ 487 (914)
..+++++... +..+. ..|..+.-|++|+++|+.+..+.+
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I 499 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI 499 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE
Confidence 7777765532 22211 378899999999999888755444
No 55
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=8.1e-30 Score=264.80 Aligned_cols=436 Identities=15% Similarity=0.243 Sum_probs=304.4
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC--CCEEEEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFIRVY 84 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~vw 84 (914)
+.+..|..+++|++|||+|+|+|+|- ....++||++.....+..|..|+-.|+|++|+|.++++++.+. |..|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 34456778999999999999999975 4667999999999899999999999999999999999997765 6678888
Q ss_pred ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC---------------------------------
Q 002511 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG--------------------------------- 131 (914)
Q Consensus 85 d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--------------------------------- 131 (914)
|++..-.... ..-...|..++|+.+|.|+++++. ..|++|.++.+
T Consensus 152 dWr~N~~~as-nkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 152 DWRVNSSGAS-NKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred hhhhcccccc-cccceeEEEEEEccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence 7753211111 112334555555555555555443 34555544322
Q ss_pred -------------------------------------------------------------ceEEEEeecC---------
Q 002511 132 -------------------------------------------------------------WMCTQIFEGH--------- 141 (914)
Q Consensus 132 -------------------------------------------------------------~~~~~~~~~~--------- 141 (914)
.-.......|
T Consensus 230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence 0000000000
Q ss_pred --------------cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCc---EEEecCCCCeeEEEEeeCC-------
Q 002511 142 --------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN---FTLDAHQKGVNCVDYFTGG------- 197 (914)
Q Consensus 142 --------------~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~------- 197 (914)
-....++.|+| ....+.+...|..++|||++..+.+ ..+-.|...|+.+.-.|-.
T Consensus 310 ~q~~~~~s~~~~a~fPD~IA~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~a 388 (1080)
T KOG1408|consen 310 SQPEPKNSESSPAIFPDAIACQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAA 388 (1080)
T ss_pred ccccccccccCcccCCceeEEEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccc
Confidence 01134566777 6778888899999999999875433 3344567777666555411
Q ss_pred --CcCEEEEEEcCCeEEEEECCCCc---eEE----------------------------------EecCcccceEEEEEe
Q 002511 198 --DKPYLITGSDDHTAKVWDYQTKS---CVQ----------------------------------TLEGHTHNVSAVCFH 238 (914)
Q Consensus 198 --~~~~l~~~~~dg~i~iwd~~~~~---~~~----------------------------------~~~~~~~~v~~i~~~ 238 (914)
....+++++.|++|++||+..+. ..+ ..-.....+.+++.+
T Consensus 389 clp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS 468 (1080)
T KOG1408|consen 389 CLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS 468 (1080)
T ss_pred cCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC
Confidence 01158999999999999987521 100 000122358999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecC---CCEEEEEecCCeEEEEcCCCcceeEEcCCCcEE
Q 002511 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS---SRRIVIGYDEGTIMVKIGREEPVASMDNSGKII 315 (914)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~ 315 (914)
|+|++|++|..-|.+++|++...+....+..|...|.++.|+.. .+.||+++.|..|.++..... +
T Consensus 469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----------y- 537 (1080)
T KOG1408|consen 469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN----------Y- 537 (1080)
T ss_pred CCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc----------c-
Confidence 99999999999999999999999999999999999999999863 568899999988887321110 0
Q ss_pred EEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCC--CEEEEEcCCcEEEEEeec----cc----
Q 002511 316 WAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNG--RFVVVCGDGEYIIYTALA----WR---- 385 (914)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g--~~lav~~~~~~~i~~~~~----~~---- 385 (914)
.....+..+...|+++.|--+| ..++.|+-.+.+.|+... .+
T Consensus 538 ----------------------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 538 ----------------------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred ----------------------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 0112245566678889888887 566666644444443322 11
Q ss_pred ---ccccCceeEEEEecCCcEEEEec-CCeEEEeccCcc-cceeeec-----------CcccceeecCcEEEEEeCC-eE
Q 002511 386 ---NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKNFQ-EKRSVRP-----------TFSAERIYGGTLLAMCSND-FI 448 (914)
Q Consensus 386 ---~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~~~-~~~~~~~-----------~~s~~~i~~g~~La~~~~~-~i 448 (914)
.....++.+++..|..+++++++ |..|+||+++.. ..+.++- ...|. |-+||+...| ++
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPS----giY~atScsdktl 665 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPS----GIYLATSCSDKTL 665 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCC----ccEEEEeecCCce
Confidence 11235667888899999999888 899999996532 2222332 33344 7899988888 99
Q ss_pred EEEeccCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 449 CFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 449 ~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
+|||..+|+++.+..+ -|+.+.|.+|.+.|.+++.|+.+++|
T Consensus 666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred EEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence 9999999999998775 68999999999999998888766555
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=1.6e-30 Score=251.97 Aligned_cols=278 Identities=27% Similarity=0.433 Sum_probs=241.4
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCC---CEEEEEECCCEEEEEECCCC
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK---QWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~g~~dg~i~vwd~~t~ 89 (914)
.|.+-|.++... +.+|++|++||.++||| ..|+..+.+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 377788888877 78999999999999999 6788999999999999999886543 35999999999999998876
Q ss_pred eee----EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC------------------------ceEEEEeecC
Q 002511 90 DKV----KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG------------------------WMCTQIFEGH 141 (914)
Q Consensus 90 ~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------------------------~~~~~~~~~~ 141 (914)
+.. +.-.+|...|.++...++|.++++|+.|.+|.||+..+. +.+...+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 542 333599999999999999999999999999999993211 2445567899
Q ss_pred cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc-
Q 002511 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS- 220 (914)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 220 (914)
..+|.++.|++ ...+++++.|.+|+.||+.++....++. ....++|+.++|..+ +|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~--Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSK--LLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccc--eeeecCCCCceeecCCCCCCC
Confidence 99999999996 7899999999999999999998887776 467789999999766 89999999999999998754
Q ss_pred --eEEEecCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCCCce-eEEEeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 221 --CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 221 --~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
..+++.+|.+.|.++.|+|... .|++|+.|+++++||+++-+ ++..+..|...|.++.|.. +..+++|+.|.+++
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 4678899999999999999665 67889999999999999877 8999999999999999974 56899999999999
Q ss_pred EEc
Q 002511 297 VKI 299 (914)
Q Consensus 297 i~~ 299 (914)
+..
T Consensus 414 i~~ 416 (423)
T KOG0313|consen 414 IFK 416 (423)
T ss_pred Eec
Confidence 953
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.4e-30 Score=260.96 Aligned_cols=276 Identities=21% Similarity=0.412 Sum_probs=242.6
Q ss_pred CCCEEEEEEcCCCCE-EEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 15 SERVKSVDLHPSEPW-ILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
.+.|.+++|||..++ +|+++ +-.|.||+..+....+++.-....|.++.|-.||++|++|...|.|+|||+++...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 468999999997775 45544 5679999999888888888888999999999999999999999999999988877788
Q ss_pred EEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 002511 94 VFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
.+.+|..++..+.|+|++ ..+++|++|+.+++||+.+.. ....+.+|+.+|.|.+|+|..+.++++|+.||+|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 899999999999999965 456788889999999999984 466788999999999999977889999999999999999
Q ss_pred CCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECC
Q 002511 173 GSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 173 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 250 (914)
+... .+..+ .|..+|..+.+-|+|. .+++++ ...|++||+-+|. .+..+..|...|+|+++..++..|++|+-|
T Consensus 184 R~~~~~v~el-nhg~pVe~vl~lpsgs--~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 184 RSLTSRVVEL-NHGCPVESVLALPSGS--LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ccCCceeEEe-cCCCceeeEEEcCCCC--EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 9874 44444 5899999999999987 566655 5689999998655 445555599999999999999999999999
Q ss_pred CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+.|++||+.+++.+..+..+ ++|.+++.+|+++.+++|..+|.+.+
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred cceEEEEccceEEEEeeecc-cceeeEEecCCCceEEEecccceeee
Confidence 99999999999999999877 89999999999999999999999987
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=4.2e-28 Score=257.72 Aligned_cols=465 Identities=15% Similarity=0.250 Sum_probs=343.8
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC-e
Q 002511 12 AQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-D 90 (914)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~-~ 90 (914)
..+.+.|+|++-+.+ ++.++. ...|.+|- ........+..|...|.-+. +=|.+++++..++.+.||+..++ .
T Consensus 73 ~~lp~~I~alas~~~--~vy~A~-g~~i~~~~-rgk~i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~ 146 (910)
T KOG1539|consen 73 KPLPDKITALASDKD--YVYVAS-GNKIYAYA-RGKHIRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQE 146 (910)
T ss_pred CCCCCceEEEEecCc--eEEEec-CcEEEEEE-ccceEEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccc
Confidence 457788999887644 455544 45688886 23345566777876666554 56889999999999999998874 1
Q ss_pred e----eEEEecCCCCEEEEEEeCCC--CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCC
Q 002511 91 K----VKVFEAHTDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (914)
Q Consensus 91 ~----~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (914)
. +..++...+.|+++ +||.- +.++.|+..|.+.+|+++++ +....+.++...|+++.-+| --+.++.|..+
T Consensus 147 e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~-K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~ 223 (910)
T KOG1539|consen 147 ELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTG-KVVYTFQEFFSRITAIEQSP-ALDVVAIGLEN 223 (910)
T ss_pred cccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccC-cEEEEecccccceeEeccCC-cceEEEEeccC
Confidence 1 12233333347766 46643 46889999999999999998 78888899999999999999 78899999999
Q ss_pred CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-CcccceEEEEEeCCCCE
Q 002511 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPI 243 (914)
Q Consensus 165 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~ 243 (914)
|+|.+++++.++.+.+++...++|+.++|..+|.. ++++|+..|.+.+||+...+.+..+. .|.+.|....|.|..+.
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p-~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epV 302 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP-LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPV 302 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCe-eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCce
Confidence 99999999999999999866799999999988874 88999999999999999887776665 78899999999999999
Q ss_pred EEEEECCCeEEEEeCCC--c--eeEEEeecCCccEEEEEEe-cCCCEEEEEecCCeEEEEc----------C--------
Q 002511 244 IITGSEDGTVRIWHATT--Y--RLENTLNYGLERVWAIGYM-KSSRRIVIGYDEGTIMVKI----------G-------- 300 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~--~--~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~dg~i~i~~----------~-------- 300 (914)
+++.+.|..+++|=..+ | +.++.-.+|..+..++.|. .+|..+.+++.|++++... +
T Consensus 303 l~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~ 382 (910)
T KOG1539|consen 303 LVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRA 382 (910)
T ss_pred EeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccc
Confidence 99999999998885443 3 4667777888999999998 6788999999999777632 0
Q ss_pred -----------CCcceeEEcCC--CcEEE-----EeeCcEEEEEeeecccceeccCCc--eeeeeeeecCCcccCCceEE
Q 002511 301 -----------REEPVASMDNS--GKIIW-----AKHNEIQTVNIKSVGADYEVTDGE--RLPLAVKELGTCDLYPQSLK 360 (914)
Q Consensus 301 -----------~~~~~~~~~~~--g~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~l~ 360 (914)
+.+++..+... ....| ...++...+ .|+..... ...+..+.+......+++++
T Consensus 383 kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~-------tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 383 KKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY-------TWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred ccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE-------EEeccCcccccEEecCccccccCcceEEEE
Confidence 11222222211 11111 111111111 12222111 11222333344567788999
Q ss_pred ECCCCCEEEEEc-CCcEEEEEeeccc--------ccccCceeEEEEecCCcEEEEec-CCeEEEeccC------------
Q 002511 361 HNPNGRFVVVCG-DGEYIIYTALAWR--------NRSFGSALEFVWSSDGEYAVRES-SSKIKIFSKN------------ 418 (914)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~~~-~~~i~v~~~~------------ 418 (914)
.++.|.|..+|. .|.+-+|+++.+. +.+.+.++.++...-++.+++++ +|.+++|+..
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~ 535 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS 535 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence 999999999997 8999999988763 23446788888777777777777 8999999832
Q ss_pred ------------------------------------cccce--eeecCcccceeecCcEEEEEeCC-eEEEEeccCCcEE
Q 002511 419 ------------------------------------FQEKR--SVRPTFSAERIYGGTLLAMCSND-FICFYDWAECRLI 459 (914)
Q Consensus 419 ------------------------------------~~~~~--~~~~~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i 459 (914)
+.++. .....|||| |++|++++.| +|++||+.++.++
T Consensus 536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D----grWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD----GRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC----CcEEEEeecCCcEEEEeccCccee
Confidence 11111 111278888 9999999998 9999999999999
Q ss_pred EEEE--cceeEEEEcCCCCEEEEEeCC-eEEEEEecHHHHH
Q 002511 460 RRID--VTVKNLYWADSGDLVAIASDT-SFYILKYNRDVVS 497 (914)
Q Consensus 460 ~~~~--~~i~~v~~s~dg~~la~~~~~-~~~~~~~~~~~~~ 497 (914)
-.+. ..+.++.|||+|.+||++..+ .-+++|.|+..+.
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~ 652 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFK 652 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhe
Confidence 8766 589999999999999999876 4456677765543
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.8e-29 Score=266.69 Aligned_cols=285 Identities=30% Similarity=0.506 Sum_probs=244.5
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (914)
+++.+|..+|.+++|+|++++|++++.+|.|++|++.+++....+..|...+..+.|+|+++++++++.+|.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888889999999999999999999999999999999998
Q ss_pred CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
+ .....+..|...+.++.|+| ++.++++++.++.|.+||+.+++....+..|...+.++.|+|++. ++++++.++.
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~ 158 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGT 158 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--EEEEEcCCCc
Confidence 6 55666678888999999999 678888888899999999998888888888999999999999855 6777777999
Q ss_pred EEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
|++||+++++.+..+..|...+.+++|+|+++.+++++.+|.|++||+.+++....+..+...+.++.|+|++.++++++
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99999998988888888888999999999999999999999999999999998888877878999999999988888888
Q ss_pred cCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEE
Q 002511 291 DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVV 370 (914)
Q Consensus 291 ~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav 370 (914)
.+|.+.+|..... ... ..+..+...+..+.|+|++++|++
T Consensus 239 ~~~~i~i~~~~~~---------~~~-------------------------------~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 239 EDGTIRVWDLRTG---------ECV-------------------------------QTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CCCcEEEEEcCCc---------eeE-------------------------------EEccccCCcEEEEEECCCCCEEEE
Confidence 8999999743221 000 001123335677888888887777
Q ss_pred Ec-CCcEEEE
Q 002511 371 CG-DGEYIIY 379 (914)
Q Consensus 371 ~~-~~~~~i~ 379 (914)
++ ++.+.+|
T Consensus 279 ~~~d~~i~iw 288 (289)
T cd00200 279 GSADGTIRIW 288 (289)
T ss_pred ecCCCeEEec
Confidence 76 6777776
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.9e-30 Score=234.91 Aligned_cols=279 Identities=17% Similarity=0.260 Sum_probs=247.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEE--eeecCCCeEEEEEec-CCCEEEEEECCCEEEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVA-RKQWVVAGADDMFIRVY 84 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vw 84 (914)
.+.+++|...|.+++|+.+|..|++|+.|+++.+|++...+..+. ..+|.+.|-.++|+| ....+++++.|.+|++|
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 377889999999999999999999999999999999988765544 457888999999988 45789999999999999
Q ss_pred ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCC
Q 002511 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (914)
Q Consensus 85 d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (914)
|.++++++..+....+.| .+.|+|+|.++++++.|..|.+.|.++. +..... .....+.-++|+. ++++|+..+..
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeehh-cccceeeeeeecC-CCCEEEEecCC
Confidence 999999999887655554 5899999999999999999999999886 333332 2344577888985 78888888888
Q ss_pred CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEE
Q 002511 165 RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (914)
Q Consensus 165 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 244 (914)
|+|.|.....-+++..+..|.....||.|+|+|. |+++|+.|-.+.+||+...-|++.+..+.-+|..++|+.+|++|
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 9999999999999999999999999999999887 89999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCC
Q 002511 245 ITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEG 293 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 293 (914)
+++|+|..|-|=++.+|..+..++.. ++...++|+|....||.+++|.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred eccCccceEEeEecccCCeEEEeecc-CCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999988755 7889999999999999988764
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.9e-30 Score=230.74 Aligned_cols=247 Identities=20% Similarity=0.315 Sum_probs=220.9
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
..+.+..+.++|+.+.|+-+|++.++++.|.+|++||...|..++++.+|...|..++.+.|+..+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC--CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS--PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
.++ +..+.+.+|.+.|..+.|+. +...+++|+.|.++++||.++ .+|++.+......|.++..+. . .|++|+
T Consensus 89 ~TG-kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--h--eIvaGS 162 (307)
T KOG0316|consen 89 NTG-KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--H--EIVAGS 162 (307)
T ss_pred ccC-eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--c--EEEeec
Confidence 999 78889999999999999998 889999999999999999876 467888888888999998853 2 599999
Q ss_pred cCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccE--EEEEEecCCC
Q 002511 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSR 284 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~ 284 (914)
.||+++.||++.|+.....- ..+|++++|+++++..+.++.|+++++.|-.+|+++..+.+|...- ..++++....
T Consensus 163 ~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999999999988765443 5679999999999999999999999999999999999998886543 3456666778
Q ss_pred EEEEEecCCeEEEEcCCCc
Q 002511 285 RIVIGYDEGTIMVKIGREE 303 (914)
Q Consensus 285 ~l~~~~~dg~i~i~~~~~~ 303 (914)
.+++|+.||.+++|..-+.
T Consensus 241 hV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eEEeccCCceEEEEEeccc
Confidence 8999999999999854443
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=278.77 Aligned_cols=286 Identities=24% Similarity=0.433 Sum_probs=244.6
Q ss_pred Eeeec-CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe--eeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 52 SFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 52 ~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
.+..| ...|.++.|+++|+.+++++.++.+++|+..+++ ....+.+|...|++++|+|++.++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34333 6789999999999999999999999999998777 67777899999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (914)
.......+++.+|...|++++|+| +++++++|+.|++|++||++++++...+.+|..+|++++|++++. +|++++.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~--~l~s~s~d 309 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN--LLVSASYD 309 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC--EEEEcCCC
Confidence 655588899999999999999999 669999999999999999999999999999999999999999988 79999999
Q ss_pred CeEEEEECCCCc--eEEEecCcccc--eEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCcc---EEEEEEec
Q 002511 209 HTAKVWDYQTKS--CVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWAIGYMK 281 (914)
Q Consensus 209 g~i~iwd~~~~~--~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~i~~~~ 281 (914)
+.|++||+.++. ++..+..+... +++++|+|++.++++++.|+.+++||+..+.....+..+... +.+...++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999998 56777766555 999999999999999999999999999999998888887664 44455678
Q ss_pred CCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCc-ccCCceEE
Q 002511 282 SSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTC-DLYPQSLK 360 (914)
Q Consensus 282 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~l~ 360 (914)
.+.++++|+.|+.|.+|......... .+..+ ...+..+.
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~----------------------------------------~l~~h~~~~~~~~~ 429 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQ----------------------------------------RLEGHSKAAVSDLS 429 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhh----------------------------------------hhcCCCCCceeccc
Confidence 99999999999999997433221110 01222 34556778
Q ss_pred ECCCCCEEEEEc---CCcEEEEE
Q 002511 361 HNPNGRFVVVCG---DGEYIIYT 380 (914)
Q Consensus 361 ~s~~g~~lav~~---~~~~~i~~ 380 (914)
++|...+++.++ |+.+.+|.
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEec
Confidence 888888888776 67777774
No 63
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=3.1e-28 Score=253.52 Aligned_cols=479 Identities=18% Similarity=0.279 Sum_probs=327.8
Q ss_pred CcchhhhhcccCCCCEEEEEEcCCCC---EEEEEecCCcEEEEeCCCCcee--EEeeecCCCeEEEEEecCCCEEEEEEC
Q 002511 3 LRLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGAD 77 (914)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~~g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~ 77 (914)
.+..+...+.||..+|+|+.|-|+.. ++++|+.||.|.+|.++..... .++.+|.. .+++++.......+.+.
T Consensus 42 ~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~--~~~cv~a~~~~~~~~~a 119 (764)
T KOG1063|consen 42 EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCK--ECVCVVARSSVMTCKAA 119 (764)
T ss_pred ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcce--eEEEEEeeeeEEEeecc
Confidence 33445677899999999999999887 8999999999999999854333 34445444 44444443333333356
Q ss_pred CCEEEEEECCC--------------------------------------------------CeeeEEEecCCCCEEEEEE
Q 002511 78 DMFIRVYNYNT--------------------------------------------------MDKVKVFEAHTDYIRCVAV 107 (914)
Q Consensus 78 dg~i~vwd~~t--------------------------------------------------~~~~~~~~~~~~~i~~~~~ 107 (914)
|+.+.+||.+. .+.+..+.+|.+.|++++|
T Consensus 120 d~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f 199 (764)
T KOG1063|consen 120 DGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAF 199 (764)
T ss_pred CceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhh
Confidence 77777776521 1334566789999999999
Q ss_pred eCCCC---EEEEEEcCCeEEEEECCCCc--------------------eEE----------EEeecCcccEEEEEEccCC
Q 002511 108 HPTLP---YVLSSSDDMLIKLWDWEKGW--------------------MCT----------QIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 108 s~~~~---~l~~~~~dg~i~iwd~~~~~--------------------~~~----------~~~~~~~~~i~~~~~~p~~ 154 (914)
...+. +|+++|.|..|+||.+.-+. .+. ..+.+|...|+++.|+| .
T Consensus 200 ~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~ 278 (764)
T KOG1063|consen 200 ARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-E 278 (764)
T ss_pred hccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-c
Confidence 87654 78899999999999864221 111 12348999999999999 7
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEE-------EecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC---ceEEE
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFT-------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQT 224 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~ 224 (914)
+..|++++.|.++.+|......-+.. +.+...+.....|+|+++ .+++-+..|..++|..... .....
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~--~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN--VIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC--EEEEecccCcEEEEeccCccceeeccc
Confidence 78899999999999998765432221 123445678899999886 7888899999999984332 23456
Q ss_pred ecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC----CceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 225 LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 225 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
+.+|...|..+.|+|.|.+|++.|.|.+-|+|-.- ++..+..-+.|...+.|+++-+....+++|.++..++++..
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 78999999999999999999999999999998754 11233344556678999999987678889999999998632
Q ss_pred CCcc-----------------------eeEEcCCCcEEEE--e-eCcE--EEEEee--ecccc-eeccCCcee-----ee
Q 002511 301 REEP-----------------------VASMDNSGKIIWA--K-HNEI--QTVNIK--SVGAD-YEVTDGERL-----PL 344 (914)
Q Consensus 301 ~~~~-----------------------~~~~~~~g~~~~~--~-~~~~--~~~~~~--~~~~~-~~~~~g~~~-----~~ 344 (914)
...- +..+..+.+.++. . .+.. ...... ..... ..-+..+.+ --
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 1110 0001111111111 0 0000 000000 00000 000000000 01
Q ss_pred eeeecCCcccCCceEEECCCCCEEEEEc------CCcEEEEEeeccccc-----ccCceeEEEEecCCcEEEEec-CCeE
Q 002511 345 AVKELGTCDLYPQSLKHNPNGRFVVVCG------DGEYIIYTALAWRNR-----SFGSALEFVWSSDGEYAVRES-SSKI 412 (914)
Q Consensus 345 ~~~~~~~~~~~~~~l~~s~~g~~lav~~------~~~~~i~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~~-~~~i 412 (914)
....+-+|...+.+++.||+|+++|++. ...|.+|+...|... +.-+|+.++|||||+|+++.+ |.++
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 1223456777889999999999999986 356889999888643 346789999999999999988 8999
Q ss_pred EEeccC-----------cccceeeec--CcccceeecCcEEEEEeCC-eEEEEeccCC--cEEEEE-----EcceeEEEE
Q 002511 413 KIFSKN-----------FQEKRSVRP--TFSAERIYGGTLLAMCSND-FICFYDWAEC--RLIRRI-----DVTVKNLYW 471 (914)
Q Consensus 413 ~v~~~~-----------~~~~~~~~~--~~s~~~i~~g~~La~~~~~-~i~~~d~~~~--~~i~~~-----~~~i~~v~~ 471 (914)
.+|... .+.+..+.+ .|+|+ +.++++++.| +|.||..... +.+.++ ...|+.++|
T Consensus 597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd----e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD----EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred EeeeeecccchhhhhccccccceEEEEcccCcc----cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 999843 223333333 88999 8899999999 9999998877 444332 247888887
Q ss_pred cC-----CCCEEEEEeCCeEEEEE
Q 002511 472 AD-----SGDLVAIASDTSFYILK 490 (914)
Q Consensus 472 s~-----dg~~la~~~~~~~~~~~ 490 (914)
.| .+..|+.+-..+.+++|
T Consensus 673 ~~~~~~e~~~~vavGle~GeI~l~ 696 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGLEKGEIVLW 696 (764)
T ss_pred eccccccccceEEEEecccEEEEE
Confidence 75 23367777777777665
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.7e-30 Score=235.67 Aligned_cols=284 Identities=14% Similarity=0.225 Sum_probs=244.9
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~ 89 (914)
.++||..+++.+.++.+|.+|.+++.|.++.||-..+|+.+-++.+|.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47799999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-----CeEEEEECCCC------ceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
+.+..++. ..+|..+.|+++|++++.+.++ +.|.++|++.. ..+...+..+.+.++.+-|.| -+..+
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETI 162 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEE
Confidence 99999884 5689999999999988877653 78999999832 244455556778899999999 89999
Q ss_pred EEEeCCCcEEEEECCCCCC-cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEE
Q 002511 159 ASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 237 (914)
++|..||.|.+||++++.. +.....|...|+.++++++.. ++++++.|.+-++||..+-.+++++. ...+|.+.++
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T--~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT--YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc--eEEecccCccceeeeccceeeEEEee-ecccccceec
Confidence 9999999999999999754 444577899999999999887 89999999999999999999999887 5678999999
Q ss_pred eCCCCEEEEEECCCe--E------------EEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 238 HPELPIIITGSEDGT--V------------RIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~--v------------~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
+|....++.|+.... | ++|++-..+.+..+++|.++|.+++|+|+|+..++|+.||.|++.
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 998777776653222 1 122222223456778899999999999999999999999999984
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.9e-28 Score=292.51 Aligned_cols=260 Identities=17% Similarity=0.277 Sum_probs=219.8
Q ss_pred CCcEEEEeCCCCceeEEe-----eecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC----e----eeEEEecCCCCE
Q 002511 36 SGTVCIWNYQSQTMAKSF-----EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM----D----KVKVFEAHTDYI 102 (914)
Q Consensus 36 ~g~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~----~----~~~~~~~~~~~i 102 (914)
+|.+++|+..+......+ ..|...|.+++|+|+|++|++|+.|+.|+||+..+. . ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 677888988766554333 348889999999999999999999999999997542 1 122233 34679
Q ss_pred EEEEEeCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE
Q 002511 103 RCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (914)
Q Consensus 103 ~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 181 (914)
.+++|+|. +.+|++++.||+|++||+.++ .....+.+|...|.+++|+|.++++|++|+.||+|++||++++.....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 99999874 689999999999999999987 6677788999999999999867899999999999999999998888777
Q ss_pred ecCCCCeeEEEEeeC-CCcCEEEEEEcCCeEEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 182 DAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 182 ~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
..+ ..+.++.|++. +. ++++|+.||.|++||++++. .+..+.+|...|+++.|. ++.+|++++.|++|++||+.
T Consensus 615 ~~~-~~v~~v~~~~~~g~--~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KTK-ANICCVQFPSESGR--SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ecC-CCeEEEEEeCCCCC--EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 644 67889999654 44 89999999999999998765 567788899999999997 67799999999999999987
Q ss_pred C------ceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCC
Q 002511 260 T------YRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 260 ~------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~ 301 (914)
. +..+..+..|...+..++|+|++++|++|+.||.+.+|...
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 4 35677888888899999999999999999999999998643
No 66
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.6e-29 Score=257.48 Aligned_cols=719 Identities=16% Similarity=0.149 Sum_probs=431.9
Q ss_pred CcchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee--ecCCCeEEEEEecCCCEEEEEECCCE
Q 002511 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE--VTELPVRSAKFVARKQWVVAGADDMF 80 (914)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~ 80 (914)
-.+.+.++|.||++.|.-+.|+.+.+.|-+...+|.|.||-+-.|....... ...+.|.+++|+.+|..++..-.||.
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa 138 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA 138 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC
Confidence 3467788999999999999999999999999999999999987775443332 24567999999999999999999999
Q ss_pred EEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------eE----EEEeecCcccEEEEEE
Q 002511 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW------MC----TQIFEGHSHYVMQVTF 150 (914)
Q Consensus 81 i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~----~~~~~~~~~~i~~~~~ 150 (914)
|.|=.++. ..+.--.-.......+.|++|...++.+-.+|.+.++|..... .+ ...+......|..+.|
T Consensus 139 vIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeecc-ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 98887764 3332211112234578999999999989899999999976541 11 1122233445777777
Q ss_pred cc-------CCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC---------CeEEEE
Q 002511 151 NP-------KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD---------HTAKVW 214 (914)
Q Consensus 151 ~p-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~i~iw 214 (914)
.. .+...|+++..+|.+.+..-.+......+. ..-.+..+.|+++|. .|++++.+ +.|.+|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~--vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA--VLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCc--EEEEccCcccccCccccceEEEe
Confidence 52 266789999999999887654433333333 236678899999987 78887754 356666
Q ss_pred ECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce--------eEEEeecCCccEEEEE--------
Q 002511 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--------LENTLNYGLERVWAIG-------- 278 (914)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~i~-------- 278 (914)
.. -|+.+.+++.....|++++|-..|-.++.+- |+.|++=+++..- .+........+-.++.
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccCh
Confidence 53 4788888988889999999998887666654 6777776655311 1111111222222222
Q ss_pred -------------EecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeee
Q 002511 279 -------------YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLA 345 (914)
Q Consensus 279 -------------~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 345 (914)
++.+--.|+.-.++|.+.-. ..+...+. +....+- .+-|..+-.
T Consensus 373 k~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~-------s~le~~~~--------~~~l~LC-------NSIGT~lD~- 429 (1189)
T KOG2041|consen 373 KTVKTVTHFENMAFYREHCVLINRQDDGVIPEY-------STLENRSR--------VYFLQLC-------NSIGTSLDY- 429 (1189)
T ss_pred hhhhhhcceeehheecccEEEEeccccCCCcch-------hhhhcccc--------eEEEeee-------cccCCcCCC-
Confidence 22222222222222222110 00000000 0001100 001111111
Q ss_pred eeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc------------cc-------------------------
Q 002511 346 VKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN------------RS------------------------- 388 (914)
Q Consensus 346 ~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~------------~~------------------------- 388 (914)
.-..+...-..-+|..+++++...+.+|.....+. ..
T Consensus 430 ------kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~ 503 (1189)
T KOG2041|consen 430 ------KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS 503 (1189)
T ss_pred ------CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC
Confidence 01112222334467788899999999995543210 00
Q ss_pred cCceeEEEEecCCcEEEEecCCeEEEeccCcccceeeecCcccc--eee---cCcEEEEEeCC-eEEEEecc---CCcEE
Q 002511 389 FGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAE--RIY---GGTLLAMCSND-FICFYDWA---ECRLI 459 (914)
Q Consensus 389 ~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~~--~i~---~g~~La~~~~~-~i~~~d~~---~~~~i 459 (914)
..++..++.| |.-+++...+|.|+-|+++......-. ..+|. .+. +...||+..-- .+.|.|+. +|..+
T Consensus 504 ~DpICAl~~s-dk~l~vareSG~I~rySl~nv~l~n~y-~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql 581 (1189)
T KOG2041|consen 504 KDPICALCIS-DKFLMVARESGGIYRYSLNNVVLTNSY-PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQL 581 (1189)
T ss_pred CCcceeeeec-ceEEEEEeccCceEEEEecceeeeecc-ccCchheeEeeccCcchhhhhhhhceeeeeecccccCccee
Confidence 0122333322 223344444788888776543322211 11111 111 24556655533 66777765 44444
Q ss_pred EEEE----cceeEEEEcCC-CCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCE
Q 002511 460 RRID----VTVKNLYWADS-GDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDC 534 (914)
Q Consensus 460 ~~~~----~~i~~v~~s~d-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~ 534 (914)
.-+- -.|+.+.|..| ..++|...+..+++++-| +..+++...|..+.|+.+. |++...+ ++
T Consensus 582 ~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn--------dpeEp~s~sGyIc~FedLe-----itsVlld-~I 647 (1189)
T KOG2041|consen 582 KLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN--------DPEEPSSVSGYICLFEDLE-----ITSVLLD-KI 647 (1189)
T ss_pred eeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc--------CccccccccceEEEeeceE-----EEEEEHh-hH
Confidence 4222 37899999965 456788888888887633 3445666778888887652 3333222 22
Q ss_pred EEEEccCCeEEEEECCEEeEEEecccceEEEEEeecCCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhc---
Q 002511 535 FIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEIL--- 611 (914)
Q Consensus 535 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l--- 611 (914)
+ -+++.....+.+... +..++..+.++....-....-++.++.....|.+ -...++.+.+++.|+..+
T Consensus 648 l-~~pE~pnk~~ii~~~---ikslrD~~~Lve~vgledA~qfiEdnPHprLWrl-----lAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 648 L-LTPENPNKTCIIEVM---IKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRL-----LAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred h-cCcCCCCcceEEEEE---ehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHH-----HHHHHHHHHhhhhHhhhhhhh
Confidence 2 233434444443222 2333322222111111112222222222221111 124566666777765442
Q ss_pred ------------CCCCcc--hHHHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCC-------hHH
Q 002511 612 ------------PSIPKE--HHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQS-------ESK 670 (914)
Q Consensus 612 ------------~~i~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~-------~~~ 670 (914)
.+|-.+ +...+..|+..++..++....+...+.+.+|++++|+|-..+++.+.... +..
T Consensus 719 ~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A 798 (1189)
T KOG2041|consen 719 GDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDA 798 (1189)
T ss_pred ccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHH
Confidence 222221 12345555555544444444455667778999999999999999987432 346
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHH-------------Hh-cCCHHHHHHHHHHHHHcCCchHHHHHHHHc
Q 002511 671 WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLY-------------SS-LGDAEGISKLASLAKEQGKNNVAFLCLFML 736 (914)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~-------------~~-~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~ 736 (914)
|+.+|+......+++.|.++|.++++.++.+.++ +. ..+.+.+..++++....|++.+|..+|+..
T Consensus 799 ~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 799 FRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 6666666666666666666666666555544443 33 345566778899999999999999999999
Q ss_pred CCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhc
Q 002511 737 GKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (914)
Q Consensus 737 g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~ 781 (914)
++++.|+..+...+||.+|+++|+.+...++..++++++..|...
T Consensus 879 s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~ 923 (1189)
T KOG2041|consen 879 SLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLAD 923 (1189)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988777543
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-28 Score=230.69 Aligned_cols=290 Identities=18% Similarity=0.285 Sum_probs=249.6
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC--CCEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD--DMFI 81 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i 81 (914)
+++..+.|..-.++|.++.|+++|..|++++.|..++|||..+++.++++..++-.|..++|......++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 46677888888999999999999999999999999999999999999999988889999999988888888877 8899
Q ss_pred EEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
+.-++.+.+.++.|.+|...|.+++.+|-+..+++++.|++|++||++.. .+...+..... ..++|.| .|-+||++
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~--pi~AfDp-~GLifA~~ 158 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGR--PIAAFDP-EGLIFALA 158 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCC--cceeECC-CCcEEEEe
Confidence 99999999999999999999999999999999999999999999999976 55555443333 3578999 88899999
Q ss_pred eCCCcEEEEECCCC--CCcEEEe---cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccce---E
Q 002511 162 SLDRTIKIWNLGSP--DPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNV---S 233 (914)
Q Consensus 162 ~~dg~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---~ 233 (914)
.....|++||+++- .|..++. ......+.+.|+|+|+ +|+.++..+.+++.|.-+|..+.++..+...- .
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 88889999999874 3444443 3467788999999998 79999999999999999999998888765542 5
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec-CCccEEEEEEecCCCEEEEEecCCeEEEEcCC
Q 002511 234 AVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 234 ~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~ 301 (914)
+.+|+||++++++|+.||+|.+|++.++..+..+.. +.+++.++.|+|.-..++++ +..+.+|...
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 788999999999999999999999999999998888 57889999999976555554 5667777544
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=255.10 Aligned_cols=285 Identities=21% Similarity=0.346 Sum_probs=250.9
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc--eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..++|+.+.|.+++..+++.+.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 4456778899999999999998899999999999999987765 67788888899999999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
|++++.+...++.+|.+.|+++.|......+++|+.|.+|++||+... .+.+.+.. ...+..|+.+ ...+++|..
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~-~C~kt~l~-~S~cnDI~~~---~~~~~SgH~ 320 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA-YCSKTVLP-GSQCNDIVCS---ISDVISGHF 320 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh-heeccccc-cccccceEec---ceeeeeccc
Confidence 999999999999999999999999988877999999999999999987 44444332 2335566654 467999999
Q ss_pred CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc----ccceEEEEEeC
Q 002511 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH----THNVSAVCFHP 239 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~ 239 (914)
|++|++||+++..+......+. .|+++..++++. -+++++.|.++.+.|+++.....++... .+..+.+.|||
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~--~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL--ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred ccceEEEeccCCceeeEeecCc-ceeeEeeccCCe--EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 9999999999999988887654 899999999988 5888899999999999998888777642 23478899999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceeEEEeecCCcc--EEEEEEecCCCEEEEEecCCeEEEE
Q 002511 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLER--VWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
++.|+++||.||.|+||++.++++...+...... |++++|+|.|..+++++.++.+.+|
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999999888776554 9999999999999999999999987
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-29 Score=262.16 Aligned_cols=274 Identities=20% Similarity=0.325 Sum_probs=246.2
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEec-C
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA-H 98 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~-~ 98 (914)
-++|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 46788 455788876 45799999999987766666688999999999999999999999999999999999999988 9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCc
Q 002511 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (914)
Q Consensus 99 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~ 178 (914)
...|-+++|+ +..+.+|+.+|.|..+|++........+.+|...|+.+.|++ +++++++|+.|+.+.|||.....+.
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc
Confidence 9999999999 567999999999999999987666566889999999999999 9999999999999999999999999
Q ss_pred EEEecCCCCeeEEEEeeCCCcCEEEEEE--cCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEE--ECCCeEE
Q 002511 179 FTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG--SEDGTVR 254 (914)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~dg~v~ 254 (914)
..+..|...|..++|+|-..+ +|++|+ .|+.|++||..++..+..+. ....|+++.|++..+-|+++ ..++.|.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~-lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSG-LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEEeccceeeeEeeeCCCccC-ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 999999999999999998766 888875 48999999999999998887 56789999999998766664 4567899
Q ss_pred EEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
||+..+.+.+..+.+|..+|..++++|||..+++|+.|.++++|..
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 9999999999999999999999999999999999999999999843
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.8e-29 Score=228.80 Aligned_cols=279 Identities=25% Similarity=0.371 Sum_probs=234.1
Q ss_pred EEEEEcCC-CCEEEEEe-------cCCcEEEEeCCCCceeEEeee--cCCCeEEEEEecCC-CEEEEEECCCEEEEEECC
Q 002511 19 KSVDLHPS-EPWILASL-------YSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 19 ~~~~~sp~-~~~la~~~-------~~g~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~ 87 (914)
.++.|||- .++||++. .+|++.|.++....-+..+.. -...+..++|+++. +.+++++.||.+++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889993 33455442 278999999865544444433 45679999999964 678888999999999964
Q ss_pred -CCeeeEEEecCCCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 88 -TMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 88 -t~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
..+++..++.|...|.++.|++. +..+++++.|++|++|+...+ ...+++.+|...|....|+|..+++|++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 23567888999999999999985 456778899999999999877 667789999999999999999999999999999
Q ss_pred cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEEEEEeCCC-CE
Q 002511 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PI 243 (914)
Q Consensus 166 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~ 243 (914)
++++||++..-....+..|...+.|+.|+.-... ++++|+.|+.|++||+++ ..++..+.+|.-.|..+.|||.. .+
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~-vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN-VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCc-EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999999887666668999999999999987654 899999999999999987 45788899999999999999954 58
Q ss_pred EEEEECCCeEEEEeCCCc-eeEEEeecCCccEEEEEEec-CCCEEEEEecCCeEEEEc
Q 002511 244 IITGSEDGTVRIWHATTY-RLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~~ 299 (914)
|++++.|-+++|||...+ ..+.+...|..-+..+.|++ +..++|.++-|+.+.+|.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 899999999999998744 35667778888899999987 467899999999999985
No 71
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.7e-28 Score=255.97 Aligned_cols=777 Identities=15% Similarity=0.142 Sum_probs=442.8
Q ss_pred CCCcchhhhhcccCCCCEEEEEEcCCCCEEEEEec----CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE
Q 002511 1 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (914)
Q Consensus 1 m~~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~----~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (914)
|.+.++.+..+....+.-+-..|||..+++|+++. .|.|.||- ++|++.+... ..-.+++++|+|..-.|+.|.
T Consensus 1 MtLYfDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred CceeecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhcc
Confidence 45555555555544455566789999999998864 68899997 6776544332 223467799999999999999
Q ss_pred CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE-EEeecC--------------
Q 002511 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT-QIFEGH-------------- 141 (914)
Q Consensus 77 ~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~-------------- 141 (914)
.-|.+.+|..++.+.-.....|+.+|..+.||++|..++++..-|.|.+|......... ..+..|
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 99999999998877777777899999999999999999999999999999876210110 000000
Q ss_pred -----------------cccEE-EEEE-------------ccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeE
Q 002511 142 -----------------SHYVM-QVTF-------------NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (914)
Q Consensus 142 -----------------~~~i~-~~~~-------------~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 190 (914)
...+- -..| .| ++..|+.++.+|+|+..|-+. +.....+.. ..| .
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~v-Q 234 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVP-KGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SEV-Q 234 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCC-CCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-chH-H
Confidence 00000 0011 12 566788888888888777432 222222111 000 0
Q ss_pred EEEeeCCCcCEEEEEEcCCeEEEEEC----------------CC-------------C----ceEEEecCcccceEEEEE
Q 002511 191 VDYFTGGDKPYLITGSDDHTAKVWDY----------------QT-------------K----SCVQTLEGHTHNVSAVCF 237 (914)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~----------------~~-------------~----~~~~~~~~~~~~v~~i~~ 237 (914)
+-|.+... .+++...+-++.++-. +. | .....+ .....+.|+|+
T Consensus 235 mLf~~~~e--ai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~-e~ge~~~c~cY 311 (1416)
T KOG3617|consen 235 MLFMGYCE--AISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL-ELGEGILCMCY 311 (1416)
T ss_pred HHHhcccc--eEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh-hcCCceEEEEE
Confidence 11111111 1111111111111100 00 0 000011 12446899999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCc-------eeEEEeecC---CccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeE
Q 002511 238 HPELPIIITGSEDGTVRIWHATTY-------RLENTLNYG---LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVAS 307 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~-------~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 307 (914)
+..+..+..|...|.+.+|--... .-..+++.. .+.|..+.|.|-.+.+++.+....+.+. +.++..
T Consensus 312 ~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~---E~~l~~ 388 (1416)
T KOG3617|consen 312 GEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG---ENSLTV 388 (1416)
T ss_pred eccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec---cCchHH
Confidence 999999999999999999963322 223334332 4679999999988888887776666652 222111
Q ss_pred EcC-CCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc
Q 002511 308 MDN-SGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN 386 (914)
Q Consensus 308 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~ 386 (914)
... ..-.+..+.+.+...... +|.. ..-..++.+..++.+. .-|+++....+.+|++.....
T Consensus 389 ~h~~~~~A~q~ss~S~~L~hc~---------sGv~------~~l~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~ 451 (1416)
T KOG3617|consen 389 KHRGKMAAIQTSSNSFTLLHCT---------SGVS------QDLKLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGS 451 (1416)
T ss_pred HHhhhhHHhhhcCCceEEEeec---------cchh------hhhhhccchhhheecc--ceEEEEcCceEEEEEecccch
Confidence 110 000111112222111110 1110 0112233445555555 458888889999998862211
Q ss_pred ccc---C--ceeEEEEecCCcEEEEecCCeEEEeccCcccceeeec-Ccccceee---cCcEEEEEeCC-eEEEEeccCC
Q 002511 387 RSF---G--SALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRP-TFSAERIY---GGTLLAMCSND-FICFYDWAEC 456 (914)
Q Consensus 387 ~~~---~--~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~-~~s~~~i~---~g~~La~~~~~-~i~~~d~~~~ 456 (914)
... + .+.+.+..--++-+.+....+|.++.........+.. ......+. .|.+|++.+.. .+.-||+...
T Consensus 452 la~~~~~tF~cet~~la~~nqN~ycies~~Vfvrt~qGtv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr~ 531 (1416)
T KOG3617|consen 452 LATIQCTTFSCETTSLAIVNQNLYCIESDKVFVRTLQGTVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSRA 531 (1416)
T ss_pred hHHHhhhhhccccchHhHhhcceEEeccCcEEEEecchhhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhhh
Confidence 100 0 0111111112333444455567776654433332222 11111111 47788888766 5555665533
Q ss_pred cEE--EEE---------EcceeEEEEcCCCCEEEE--Ee-----CCeEEEEEecHHHHHHh--hhCCCCCCcccccccee
Q 002511 457 RLI--RRI---------DVTVKNLYWADSGDLVAI--AS-----DTSFYILKYNRDVVSAY--LDSGKPVDEQGVEDAFE 516 (914)
Q Consensus 457 ~~i--~~~---------~~~i~~v~~s~dg~~la~--~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~ 516 (914)
++- ... .+.+..+..+.+|..+.+ +. -+.++.|+|.+..+... ++.......++.
T Consensus 532 e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~~~~~lE~ETNakkEs~----- 606 (1416)
T KOG3617|consen 532 ELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQMMNHLEPETNAKKESS----- 606 (1416)
T ss_pred cccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHHHhhccCcccccccccc-----
Confidence 321 111 135666777766554322 22 24577888877665542 211100000000
Q ss_pred EeeeeeeEEEeeEEecCEEEEEccCCeEEEEE--C--CEEe-EEEecc------cceEEEEEeecCC-EEEEEe--cCCc
Q 002511 517 LLHETNERVRTGLWVGDCFIYNNSSWRLNYCV--G--GEVT-TMFHLD------RPMYLLGYLASQS-RVYLID--KEFN 582 (914)
Q Consensus 517 ~~~~~~~~i~~~~w~~~~~i~~~~~~~l~~~~--~--~~~~-~~~~~~------~~~~~~~~~~~~~-~l~~~d--~~~~ 582 (914)
........|+. +..++..+- . ++.. .-..+. ..+.++.++..+. .+.+.. ....
T Consensus 607 -----ts~pvr~fWD~-------~epRllv~E~~~~~p~s~pQ~ns~QPs~~~qskVvvLt~F~seehG~ll~~~~q~~~ 674 (1416)
T KOG3617|consen 607 -----TSPPVRFFWDE-------NEPRLLVVECIHVEPESTPQRNSLQPSHFVQSKVVVLTAFVSEEHGILLQGMQQKNL 674 (1416)
T ss_pred -----CCCCceeeecC-------CCCcEEEEEeeecccccCcccccCCCccccccceEEEeeecccccceeeeecccCCC
Confidence 01111233443 222221110 0 0000 000000 0111111111110 111100 0000
Q ss_pred eEEEEecchhHhHHHHHHccCHHHHhhhc--CCCCcchHHHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHH
Q 002511 583 VMGYTLLLSLIEYKTLVMRGDLERANEIL--PSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQE 660 (914)
Q Consensus 583 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~l--~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~ 660 (914)
.-.--+...++.|- +.|+.-|+-+.-. ..|+. ..+++-|..+--.+.+-..+.+..+.|.+++..|++|.|++
T Consensus 675 ~~~~Ll~~~VPn~y--fvRk~~~d~ed~~ee~~i~~---~~~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~Afk 749 (1416)
T KOG3617|consen 675 HCGKLLSVSVPNFY--FVRKSGWDEEDNREERTIGK---TLVAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFK 749 (1416)
T ss_pred CccceeeeecCceE--EEecccccccccccccccch---hhhhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHH
Confidence 00000122222221 1122112111110 11221 22334455555556677778888999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCH-HHHHHHHHHHHHcCCchHHHHHHHHcCCH
Q 002511 661 IATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDA-EGISKLASLAKEQGKNNVAFLCLFMLGKL 739 (914)
Q Consensus 661 ~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~-~~~~~~a~~a~~~~~~~~a~~~~~~~g~~ 739 (914)
.++.++++..|.++|.+|++..++++|.-|+..+++.+++.-|.+...+. +.-.++|-+|...|+...|..+|.++.++
T Consensus 750 sI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 750 SIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred HHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998886665 66788999999999999999999999999
Q ss_pred HHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhc--------------------------ChhhhhhcCCCc
Q 002511 740 EDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV--------------------------NPKAAESLADPE 793 (914)
Q Consensus 740 ~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~--------------------------~~~~a~~l~~~~ 793 (914)
|..-++|...|+|.+|+++|.++..-++..-.=.|+++|... +++.-++.....
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 999999999999999999999875544433333444444322 122334444445
Q ss_pred cCCCccccHHHHHHHHHHHhhccCCCCCCcccccc
Q 002511 794 EYSNLFDDWQVALAVESKAAATRGVHPPAEDYVNH 828 (914)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 828 (914)
..+.|+..|++.+|..|+++.|..-|..|+||-+.
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 67789999999999999999999999999999664
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.2e-30 Score=245.74 Aligned_cols=285 Identities=18% Similarity=0.302 Sum_probs=242.8
Q ss_pred hhhhcccCCCCEEEEEEcCCC-CEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 7 IKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
..-.|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+..+|..|.+.|+.+++.. ..++++++|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678999999999999987 7899999999999999999999999999999999999987 5688999999999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
++. ...+++.+ ...+..+.-+..+..+++|+. .|.|||.... .+.+.+.-....|.++.|+|...+.|++|..|+
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccC-CccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 874 56666664 345677777777788888887 5999998866 566666666678999999998889999999999
Q ss_pred cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEEEEEeCCCCEE
Q 002511 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELPII 244 (914)
Q Consensus 166 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l 244 (914)
.|.+||++.+.++..+.. ...-+.++|+|.+- .+++++.|..++.||++. ..++....+|.+.|.++.|+|.|+-+
T Consensus 211 sIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeaf--nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVIL-TMRTNTICWNPEAF--NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred ceEEEecccCCccceeee-eccccceecCcccc--ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 999999999999877653 34458899999555 689999999999999987 45678888999999999999999999
Q ss_pred EEEECCCeEEEEeCCCceeEEEee-cCCccEEEEEEecCCCEEEEEecCCeEEEEcCC
Q 002511 245 ITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~ 301 (914)
++||.|.+|+||..+.+.....+. .....|.++.||.|.+++++|++|+.|++|...
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999988766433322 234679999999999999999999999999544
No 73
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=253.95 Aligned_cols=252 Identities=17% Similarity=0.324 Sum_probs=216.7
Q ss_pred CceeEEeeecCCCeEEEEEec-CCCEEEEEECCCEEEEEECCC-CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEE
Q 002511 47 QTMAKSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (914)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~t-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 124 (914)
.+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|..++|+++|..+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 356778899999999999999 889999999999999999876 899999999999999999999999999999999999
Q ss_pred EEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
+||.++| ++...+. ....+.|+.|+|++.+.|++|+.|+.|+.||+++++.+..+..|-+.|..+.|.+++. .+++
T Consensus 284 lwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~--rFis 359 (503)
T KOG0282|consen 284 LWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR--RFIS 359 (503)
T ss_pred eeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc--eEee
Confidence 9999999 5555554 2345899999997779999999999999999999999999999999999999999988 6999
Q ss_pred EEcCCeEEEEECCCCceEEEec-CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce---eEEEeecC--CccEEEEE
Q 002511 205 GSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---LENTLNYG--LERVWAIG 278 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~--~~~v~~i~ 278 (914)
.++|++++||+.+.+..++.+. .+.....++..+|+++++++-+.|+.|.++.+...- ....+.+| .+.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999998877655443 234557789999999999999999999999865321 22334444 24567789
Q ss_pred EecCCCEEEEEecCCeEEEEcCCC
Q 002511 279 YMKSSRRIVIGYDEGTIMVKIGRE 302 (914)
Q Consensus 279 ~~~~~~~l~~~~~dg~i~i~~~~~ 302 (914)
|||||.+|++|..+|.+.+|.-+.
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechh
Confidence 999999999999999999985443
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=6.9e-27 Score=248.51 Aligned_cols=388 Identities=15% Similarity=0.224 Sum_probs=298.6
Q ss_pred EEEEEEcCC--CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE
Q 002511 18 VKSVDLHPS--EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 18 v~~~~~sp~--~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~ 95 (914)
|+++ +||. -+.++.|+..|.+.|||+++++.+.+++.+...|+++.=+|-=..+++|..+|+|.++|++.++.+..|
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 6666 4664 356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEeCCCCE-EEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 96 EAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 96 ~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
+...+.|+.++|..||+. +++|+..|.+.+||++.......+...|.+.|....|.| +...+++++.|..+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeC
Confidence 865699999999999965 566677799999999998566666668989999999999 888999999999998885543
Q ss_pred C----CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC----------------------------------
Q 002511 175 P----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY---------------------------------- 216 (914)
Q Consensus 175 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~---------------------------------- 216 (914)
+ +.++.-.+|..+..|+.|..... ..+.+++.|++++.+++
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 3 23444467888888888873322 15666666665555543
Q ss_pred -------------------------------CCCce-EEEec-----CcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 217 -------------------------------QTKSC-VQTLE-----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 217 -------------------------------~~~~~-~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
++... .+.+. .....+++++.++.|++.+.|...|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 22111 11111 123568999999999999999999999999999
Q ss_pred CceeEEEe---ecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceec
Q 002511 260 TYRLENTL---NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEV 336 (914)
Q Consensus 260 ~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 336 (914)
+|.....+ ..|.++|++++...-++.+++++.+|.+.+|.-.......
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----------------------------- 529 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----------------------------- 529 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----------------------------
Confidence 99988888 4788999999999999999999999999998433321100
Q ss_pred cCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeeccc-----ccccCceeEEEEecCCcEEEEec-C
Q 002511 337 TDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWR-----NRSFGSALEFVWSSDGEYAVRES-S 409 (914)
Q Consensus 337 ~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~ 409 (914)
.. .....+..+..+.....+|++ .+-.|.+|+....+ ..+...+++++|||||+++++++ |
T Consensus 530 ---------~l---~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 530 ---------SL---RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD 597 (910)
T ss_pred ---------ee---ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC
Confidence 00 001133455555555555555 47788999887654 23567899999999999999999 8
Q ss_pred CeEEEeccCcccce-e-------eecCcccceeecCcEEEEEeCC--eEEEEec
Q 002511 410 SKIKIFSKNFQEKR-S-------VRPTFSAERIYGGTLLAMCSND--FICFYDW 453 (914)
Q Consensus 410 ~~i~v~~~~~~~~~-~-------~~~~~s~~~i~~g~~La~~~~~--~i~~~d~ 453 (914)
++|++||+...... . ....|||. |++||+...+ .|++|.-
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~sls~SPn----gD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCTSLSFSPN----GDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcceeeEECCC----CCEEEEEEecCceEEEEEc
Confidence 99999996532211 1 11278898 9999999888 7777753
No 75
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.2e-25 Score=222.57 Aligned_cols=413 Identities=17% Similarity=0.332 Sum_probs=299.3
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCC--------EEEEEECCCCee
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--------FIRVYNYNTMDK 91 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--------~i~vwd~~t~~~ 91 (914)
.+-+-|.|..+... -+.+.+||++.. ..+.+.+|...|.|+..+|+.-.+++|..-| .+++||..+...
T Consensus 70 Nly~lptgE~vyfv--A~V~Vl~n~ee~-~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 70 NLYLLPTGELVYFV--AAVGVLYNWEER-SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred eeEEccCccEEEEe--ccEEEEEeehhh-hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 45677888765543 346677776543 3355778999999999999998888775544 699999888888
Q ss_pred eEEEecCCCCEEEEEEeCC--CCEEEEE--EcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 92 VKVFEAHTDYIRCVAVHPT--LPYVLSS--SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
+..+..-...|+|++|++. |.+++.. +.+..+.+||+..+... ......+..|....|+|.+.+++++++ .+.+
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~-~~vk~sne~v~~a~FHPtd~nliit~G-k~H~ 224 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL-GPVKTSNEVVFLATFHPTDPNLIITCG-KGHL 224 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc-CcceeccceEEEEEeccCCCcEEEEeC-CceE
Confidence 8888877778999999983 4455544 34567899999877333 333344566888999998888888876 5899
Q ss_pred EEEECCCCCCcEEE---ec-CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCE
Q 002511 168 KIWNLGSPDPNFTL---DA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 168 ~vwd~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
.+|+.+++....+. .. .++.|.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.+++.-.+|.
T Consensus 225 ~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt- 300 (626)
T KOG2106|consen 225 YFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT- 300 (626)
T ss_pred EEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-
Confidence 99999887654433 22 236789999999998 99999999999999988777777779999999999999996
Q ss_pred EEEEECCCeEEEEeCCCceeEEEe--ecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCc
Q 002511 244 IITGSEDGTVRIWHATTYRLENTL--NYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (914)
|++|+.|..|..|| .+.+.++.. ....+++..++-...+ |.+|+..+.|..- ++
T Consensus 301 llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~G--------t~------------- 356 (626)
T KOG2106|consen 301 LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQG--------TL------------- 356 (626)
T ss_pred EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEe--------ee-------------
Confidence 55599999999999 556655443 3445677777654333 7777766655431 00
Q ss_pred EEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee--cccccccCceeEEEEe
Q 002511 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL--AWRNRSFGSALEFVWS 398 (914)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~--~~~~~~~~~~~~~~~s 398 (914)
.++-.+.. ..+....-.++.+|+...+++|+ |+.+.+|+-. .|....-.++.++.|.
T Consensus 357 ---------------~~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 357 ---------------ENGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred ---------------cCCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeecc
Confidence 00000000 01111334678888888788777 9999999722 2444555678899999
Q ss_pred cCCcEEEEec-CCeEEEeccCcccceeee-------c-CcccceeecCcEEEEEeCC-eEEEEeccC-CcEEEEEE----
Q 002511 399 SDGEYAVRES-SSKIKIFSKNFQEKRSVR-------P-TFSAERIYGGTLLAMCSND-FICFYDWAE-CRLIRRID---- 463 (914)
Q Consensus 399 ~~~~~l~~~~-~~~i~v~~~~~~~~~~~~-------~-~~s~~~i~~g~~La~~~~~-~i~~~d~~~-~~~i~~~~---- 463 (914)
|.| .++.+. .|...|.|.+.+...++. . .|+|+ |.+||+++.| .|++|.++. |....+..
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~----G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD----GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC----CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 999 555555 788888875543322222 1 78888 9999999999 999999874 44443332
Q ss_pred cceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 464 VTVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 464 ~~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
..|+.+.||+|++++.+.+.|--+.+|
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEE
Confidence 389999999999999999988877776
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=247.90 Aligned_cols=288 Identities=21% Similarity=0.363 Sum_probs=236.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc----eeEEeee-cCCCeEEEEEecCCCEEEEEECCCEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (914)
..+|.+|+..|.++++.|.|..|++|+.|..|++||+.... ..+.+.. ....|+++.|++.|..|++.+.....+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678999999999999999999999999999999987532 2233332 345799999999999999999999999
Q ss_pred EEECCCCeeeEEE------------ecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEee-----cCccc
Q 002511 83 VYNYNTMDKVKVF------------EAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHY 144 (914)
Q Consensus 83 vwd~~t~~~~~~~------------~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~ 144 (914)
|+|-...+.+... ++|...++|.+|+|.. ..+++++.||+++|||+.......+++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 9997654443322 4789999999999976 4688999999999999987655555443 33456
Q ss_pred EEEEEEccCCCCEEEEEeCCCcEEEEECCCCC--Cc-EEEecCCC--CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC
Q 002511 145 VMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PN-FTLDAHQK--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~-~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
+++++|+| ++..|++|+.||.|.+|+..+.. +. ..-..|.. .|+|+.|+++|+ +|++-+.|+++++||++..
T Consensus 320 ~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~--~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 320 VTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN--YLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc--hhhhccCCCceeeeecccc
Confidence 89999999 89999999999999999985533 22 23356766 899999999998 8999999999999999874
Q ss_pred -ceEEEecCc--ccceEEEEEeCCCCEEEEEEC------CCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 220 -SCVQTLEGH--THNVSAVCFHPELPIIITGSE------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 220 -~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
+++....+- ..+-+.++|||+.++|++|+. .|.+.+||..+...+..+......|..+.|+|.-+.|.+|+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 455555443 234578899999999999863 46899999999999999998889999999999999999999
Q ss_pred cCCeEEEE
Q 002511 291 DEGTIMVK 298 (914)
Q Consensus 291 ~dg~i~i~ 298 (914)
.||.+.++
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999985
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1e-27 Score=221.65 Aligned_cols=296 Identities=18% Similarity=0.263 Sum_probs=238.3
Q ss_pred EeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002511 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (914)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (914)
.+.+|+.|++.+.++.+|.+|++++.|....||-..+|+.+.++.+|.+.|.|+..+.+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecCcccEEEEEEccCCCCEEEEEeC-----CCcEEEEECC-------CCCCcEEEecCCCCeeEEEEeeCCCc
Q 002511 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-----DRTIKIWNLG-------SPDPNFTLDAHQKGVNCVDYFTGGDK 199 (914)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (914)
+. ...+. ...+|..+.|++ ++++++.+.. .+.|.++|++ +..|...+..+...++.+-|.|-++
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~- 160 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE- 160 (327)
T ss_pred cE-EEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-
Confidence 44 44443 456799999999 7777777654 3679999997 4567888888899999999999888
Q ss_pred CEEEEEEcCCeEEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEE
Q 002511 200 PYLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIG 278 (914)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~ 278 (914)
+|++|..+|.|.+||.++|. .+...+.|...|+.++++|+..++++++.|.+-++||..+...+.++... .+|.+.+
T Consensus 161 -~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~aa 238 (327)
T KOG0643|consen 161 -TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTAA 238 (327)
T ss_pred -EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-cccccee
Confidence 89999999999999999974 56666789999999999999999999999999999999999999998766 7899999
Q ss_pred EecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCce
Q 002511 279 YMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQS 358 (914)
Q Consensus 279 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 358 (914)
++|....++.|+.....-+-..... .|+.- -+. ++.-- ...+.....|-.++.+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r-------~GKFE------ArF---------yh~i~----eEEigrvkGHFGPINs 292 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTR-------AGKFE------ARF---------YHLIF----EEEIGRVKGHFGPINS 292 (327)
T ss_pred cccccceEEecCCceeeeeeeeccc-------ccchh------hhH---------HHHHH----HHHhccccccccCcce
Confidence 9999888888765443333100000 00000 000 00000 0111224667778888
Q ss_pred EEECCCCCEEEEEc-CCcEEEE
Q 002511 359 LKHNPNGRFVVVCG-DGEYIIY 379 (914)
Q Consensus 359 l~~s~~g~~lav~~-~~~~~i~ 379 (914)
++|+|+|+..++|+ ||.+++.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eEECCCCcccccCCCCceEEEE
Confidence 88888888888888 7777765
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=243.30 Aligned_cols=276 Identities=19% Similarity=0.384 Sum_probs=237.5
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCcee----EE-------------e-eecCCCeEEEEEecCC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA----KS-------------F-EVTELPVRSAKFVARK 69 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~s~~~ 69 (914)
.+.+..|.-+|++|+++|+.+++++++.+|+|.-|++.++... .. - +.|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4566789999999999999999999999999999999887532 11 0 2567789999999999
Q ss_pred CEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEE
Q 002511 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT 149 (914)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 149 (914)
++|++|+.|..|.||+.++++.++.+.+|.+.|.+++|-.....|++++.|+.|++|+++.. ....++.+|...|.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh-HHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999988889999999999999999987 66778889999999998
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC--
Q 002511 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-- 227 (914)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 227 (914)
... -...+.+|+.|+++++|++. ......+.++.+.+.|++|-.+. .+++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~-reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALS-RERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhc-ccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc---ceeeccCCceEEEeeecccCceeEeeccc
Confidence 876 56677777799999999994 34456778899999999998665 499999999999999998888776532
Q ss_pred ----------cccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc----eeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 228 ----------HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 228 ----------~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
+...|++++..|...++++|+.+|.|++|-+..+ +++..+. -.+-|++++|+++|+++++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 1237999999999999999999999999998877 3445554 347899999999999887774
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=241.07 Aligned_cols=253 Identities=20% Similarity=0.398 Sum_probs=215.6
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeee-cCCCeEEEEEecCCCEEEEEECCCEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIR 82 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (914)
.+++++++.+|..+|..+.||||.++|++++.+..+.+||+.+|.....+.. +...+.+++|.|||..+++|+.|++|.
T Consensus 258 ~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 258 HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 3678899999999999999999999999999999999999999998877763 467899999999999999999999999
Q ss_pred EEECCCCeeeEEEecC-CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 83 VYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
.||++. ......++- ...|.+++.++||+++++.+.|..|++++.++. ...... ....+|++++.+. ++.++++.
T Consensus 338 ~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~dr~li-se~~~its~~iS~-d~k~~Lvn 413 (519)
T KOG0293|consen 338 MWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VDRGLI-SEEQPITSFSISK-DGKLALVN 413 (519)
T ss_pred EecCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hhhccc-cccCceeEEEEcC-CCcEEEEE
Confidence 999874 444444332 346999999999999999999999999998875 333233 3346799999998 89999999
Q ss_pred eCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCC-CcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCC
Q 002511 162 SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG-DKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 (914)
Q Consensus 162 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 240 (914)
-.+..+++||+...+.+..+.+|..+-.-+.-+-.| +..++++|+.|+.|+||+..+++++..+.||...|.+++|+|.
T Consensus 414 L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 999999999999888888888888765544433333 3359999999999999999999999999999999999999996
Q ss_pred CC-EEEEEECCCeEEEEeCCC
Q 002511 241 LP-IIITGSEDGTVRIWHATT 260 (914)
Q Consensus 241 ~~-~l~~~~~dg~v~iwd~~~ 260 (914)
.+ ++|++|.||+|+||-...
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 54 789999999999998653
No 80
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=2.8e-29 Score=239.72 Aligned_cols=228 Identities=27% Similarity=0.499 Sum_probs=205.9
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (914)
....|.|+.+ |...+++|..|.+|+|||.++..+...+.+|++.|.|+.|. .+.|++|+.|.+|++||++++ .+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC-chh
Confidence 3457999887 55679999999999999999999999999999999999996 458999999999999999999 788
Q ss_pred EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC---cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEE
Q 002511 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (914)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (914)
.++.+|...|..+.|+ ++++++++.|.++.+||+.+... ...+.+|...|+.+.|+. . |+++++.|.+|+
T Consensus 271 ~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k--yIVsASgDRTik 343 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K--YIVSASGDRTIK 343 (499)
T ss_pred hHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c--eEEEecCCceEE
Confidence 8888999999999997 47999999999999999987653 245678999999999852 2 899999999999
Q ss_pred EEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecC
Q 002511 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (914)
+|++.+++++.++.+|...|.|+.+ .++++++|+.|.+|++||+..|.+++.+.+|..-|.++.| +.+.+++|..|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 9999999999999999999988776 4689999999999999999999999999999999999999 56789999999
Q ss_pred CeEEEEc
Q 002511 293 GTIMVKI 299 (914)
Q Consensus 293 g~i~i~~ 299 (914)
|.|++|.
T Consensus 420 GkikvWd 426 (499)
T KOG0281|consen 420 GKIKVWD 426 (499)
T ss_pred ceEEEEe
Confidence 9999984
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=220.09 Aligned_cols=276 Identities=19% Similarity=0.276 Sum_probs=228.4
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE--EecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV--FEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWD 127 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~--~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd 127 (914)
+.+.+|..+|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 44567889999999999999999999999999999987755443 35899999999999854 5789999999999999
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
++.++ +......... =.-+.|+| +++++++++.|..|.+.|.++.+.....+ ....++.++|+.+++ +++....
T Consensus 94 ~r~~k-~~~~i~~~~e-ni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd--~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGK-CTARIETKGE-NINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND--LFFLTNG 167 (313)
T ss_pred eccCc-EEEEeeccCc-ceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC--EEEEecC
Confidence 99984 4444333333 34578999 89999999999999999998877655443 456678889985555 6777777
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEE
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (914)
.|+|.|..+..-+++.+++.|.....||.|+|+|+++++|+.|..+.+||+...-+++.+....-+|..++|+.+|++||
T Consensus 168 lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 89999999999999999999999999999999999999999999999999998889999999989999999999999999
Q ss_pred EEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002511 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (914)
Q Consensus 288 ~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (914)
+|+.|-.|-|- . +++|.++-. ..++.+-..++|+|...+
T Consensus 248 SaSEDh~IDIA---------~---------------------------vetGd~~~e-----I~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 248 SASEDHFIDIA---------E---------------------------VETGDRVWE-----IPCEGPTFTVAWHPKRPL 286 (313)
T ss_pred ccCccceEEeE---------e---------------------------cccCCeEEE-----eeccCCceeEEecCCCce
Confidence 99999988872 1 333333321 234445568999999999
Q ss_pred EEEEcC
Q 002511 368 VVVCGD 373 (914)
Q Consensus 368 lav~~~ 373 (914)
||.+.+
T Consensus 287 LAyA~d 292 (313)
T KOG1407|consen 287 LAYACD 292 (313)
T ss_pred eeEEec
Confidence 998764
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.5e-27 Score=262.50 Aligned_cols=282 Identities=19% Similarity=0.303 Sum_probs=239.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe--cCCcEEEEeCCC------------CceeEEeeecCCCeEEEEEecCCCEEEEEECC
Q 002511 13 QRSERVKSVDLHPSEPWILASL--YSGTVCIWNYQS------------QTMAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~--~~g~v~iwd~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (914)
.+...|.+++.||||..+|+|+ .||.+.||+.+. .+.+.+...|.+.|+|+.|+|||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455799999999999999999 798999998643 23445666799999999999999999999999
Q ss_pred CEEEEEECCC------------------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeec
Q 002511 79 MFIRVYNYNT------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (914)
Q Consensus 79 g~i~vwd~~t------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (914)
+.|.||.... .+.+..+.+|...|..++|+|++.+|++++.|++|.+||..+. .....+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeec
Confidence 9999998762 1356778899999999999999999999999999999999998 89999999
Q ss_pred CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC------CCCeeEEEEeeCCCcCEEEEEEc----CCe
Q 002511 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH------QKGVNCVDYFTGGDKPYLITGSD----DHT 210 (914)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~----dg~ 210 (914)
|.+.|..+.|.| -+++|++-+.|++|++|++.+......+..+ ...+..+.|+|+|+ +|++... -.+
T Consensus 170 H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 170 HQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKST 246 (942)
T ss_pred ccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcce
Confidence 999999999999 8999999999999999997765555544332 23467899999998 7877643 346
Q ss_pred EEEEECCCCceEEEecCcccceEEEEEeCC-----CC------------EEEEEECCCeEEEEeCCCceeEEEee-cCCc
Q 002511 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LP------------IIITGSEDGTVRIWHATTYRLENTLN-YGLE 272 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~------------~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~ 272 (914)
+.|.+-.+.+.-..+-+|..++.++.|+|. .. .+|+|+.|++|.||.....+++.... ....
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 888888888888889999999999999982 11 67899999999999987777655433 3457
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 273 RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.|..++|+|||..|.+++.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999984
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=233.52 Aligned_cols=279 Identities=19% Similarity=0.281 Sum_probs=249.2
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~ 95 (914)
..++++...|..+.+++|+.|..+.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46899999998888999999999999999999999999999999999999999999999999999999999887777788
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee-cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 96 EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 96 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
..|..+|+.+..+|+|.||++++.||+..+.|++++..+..... ...-.+++.+|+| |+.+|.+|..||.|+|||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence 89999999999999999999999999999999999965555443 2345689999999 999999999999999999999
Q ss_pred CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc-ccceEEEEEeCCCCEEEEEECCCeE
Q 002511 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-THNVSAVCFHPELPIIITGSEDGTV 253 (914)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~dg~v 253 (914)
+.....|.+|.++|..++|+.+|- ||+++++|+.|++||++..+..+++... ...+.+++|.+.|.+|+.++.|=.|
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY--~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGY--WLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCCCCCceeEEEeccCce--EEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 999999999999999999998776 8999999999999999987777666533 2369999999999999999887777
Q ss_pred EEEeCC--CceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 254 RIWHAT--TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 254 ~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
++++-. +++.+..+..+.+..+++.|....+++++++.|..+++
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 777633 56678888888888999999999999999999988776
No 84
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.4e-26 Score=235.16 Aligned_cols=540 Identities=15% Similarity=0.192 Sum_probs=339.0
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE--CCCEEEEEECCCCeeeEEE
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~--~dg~i~vwd~~t~~~~~~~ 95 (914)
-..++-+|-..++|- -....|.+||.+..+.-+.+..+..+++|++||++|+++++|- ....++||++.....+..|
T Consensus 40 ~~gLa~~p~Sgl~aY-pAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf 118 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAY-PAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF 118 (1080)
T ss_pred CCcccccccccceee-ccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh
Confidence 345666665554443 2246789999998888788888889999999999999999985 5678999999998889999
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEEc--CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 002511 96 EAHTDYIRCVAVHPTLPYVLSSSD--DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (914)
Q Consensus 96 ~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 173 (914)
..|.-.++|++|+|.++|+++.+. |..|.+|||+.+. ...-..-...|..++|+. ++.++++.+ +..|++|.+.
T Consensus 119 vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~--~~asnkiss~Vsav~fsE-dgSYfvT~g-nrHvk~wyl~ 194 (1080)
T KOG1408|consen 119 VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNS--SGASNKISSVVSAVAFSE-DGSYFVTSG-NRHVKLWYLQ 194 (1080)
T ss_pred hhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcc--cccccccceeEEEEEEcc-CCceeeeee-eeeEEEEEee
Confidence 999999999999999999997765 7889999998652 122223456789999998 899999877 5889999986
Q ss_pred CCCCcE-----------------------------------EEe--c-----------------CCCCeeEEEEeeCCCc
Q 002511 174 SPDPNF-----------------------------------TLD--A-----------------HQKGVNCVDYFTGGDK 199 (914)
Q Consensus 174 ~~~~~~-----------------------------------~~~--~-----------------~~~~v~~~~~~~~~~~ 199 (914)
.++... .+. + ....-+|++.+ .
T Consensus 195 ~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~-- 270 (1080)
T KOG1408|consen 195 IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S-- 270 (1080)
T ss_pred ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c--
Confidence 543100 000 0 01112344443 2
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEecC---------------c---------ccceEEEEEeCCCCEEEEEECCCeEEE
Q 002511 200 PYLITGSDDHTAKVWDYQTKSCVQTLEG---------------H---------THNVSAVCFHPELPIIITGSEDGTVRI 255 (914)
Q Consensus 200 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~---------~~~v~~i~~~~~~~~l~~~~~dg~v~i 255 (914)
.+|++|+.+|.|++|+..+-..+.++.. | ......+.|+|....|.+.-.|..+++
T Consensus 271 r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv 350 (1080)
T KOG1408|consen 271 RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV 350 (1080)
T ss_pred ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence 3899999999999998765433222210 0 011346778988889999999999999
Q ss_pred EeCCCcee---EEEeecCCccEEEEEEecC-----------CCEEEEEecCCeEEEEcCCCc---ceeEEc---CCC-cE
Q 002511 256 WHATTYRL---ENTLNYGLERVWAIGYMKS-----------SRRIVIGYDEGTIMVKIGREE---PVASMD---NSG-KI 314 (914)
Q Consensus 256 wd~~~~~~---~~~~~~~~~~v~~i~~~~~-----------~~~l~~~~~dg~i~i~~~~~~---~~~~~~---~~g-~~ 314 (914)
||++.-.. ...+-+|...||++..-|- ...+++++.|++|++|..... .++..+ .+- ++
T Consensus 351 WDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki 430 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI 430 (1080)
T ss_pred EeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence 99986543 3345567778888765541 134889999999999964431 111000 000 00
Q ss_pred EEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccccc-----c
Q 002511 315 IWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWRNR-----S 388 (914)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~~~-----~ 388 (914)
++. +.+.+.+...+ ..-+++- ....-.....+++++.||+|++||.|. .|++.+|++...+.. +
T Consensus 431 ~y~-d~~~q~~~d~~------~~~fdka---~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH 500 (1080)
T KOG1408|consen 431 PYE-DSTQQIMHDAS------AGIFDKA---LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH 500 (1080)
T ss_pred ccc-cCchhhhhhcc------CCccccc---chhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc
Confidence 000 00000000000 0000000 000112334678999999999999998 899999998876533 4
Q ss_pred cCceeEEEEec-C--CcEEEEec-CCeEEEeccCc--ccceeee-------c-CcccceeecCcEEEEEeCCeEEEEecc
Q 002511 389 FGSALEFVWSS-D--GEYAVRES-SSKIKIFSKNF--QEKRSVR-------P-TFSAERIYGGTLLAMCSNDFICFYDWA 454 (914)
Q Consensus 389 ~~~~~~~~~s~-~--~~~l~~~~-~~~i~v~~~~~--~~~~~~~-------~-~~s~~~i~~g~~La~~~~~~i~~~d~~ 454 (914)
-..|.++.||. + .+++++++ |.-|.|||..- ...+++. . .|...+ +...+++++.|....|+..
T Consensus 501 esEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g--ln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 501 ESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG--LNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--CceEEEeccCchhhheehh
Confidence 46789999983 2 36788888 78899998431 1111111 1 121110 1256677777755556554
Q ss_pred C----CcEEEEEE-----cceeEEEEcCCCCEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEE
Q 002511 455 E----CRLIRRID-----VTVKNLYWADSGDLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (914)
Q Consensus 455 ~----~~~i~~~~-----~~i~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (914)
. |.+..+.. ..+..|...|+.+++++++.|.-+++.- +++ ....+.|.--....+..
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~--------i~s------gKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD--------IES------GKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe--------ccc------cceeeeecccccCCCce
Confidence 3 44333222 3688899999999999999888775541 111 11223333322221222
Q ss_pred EeeEEec--CEEEEEccCCeEEEEE---CCEEeEEEecccceEEEEEeecCCEEEEEecCCceEEEEecchh
Q 002511 526 RTGLWVG--DCFIYNNSSWRLNYCV---GGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSL 592 (914)
Q Consensus 526 ~~~~w~~--~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~ 592 (914)
.....+. .++...-.+..|.+|- |.-+..+..+...+.=+.|.++...++-+.-+|-|+.|.+.+..
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhH
Confidence 2233333 2333333334444332 44334444444444445566778888888899999999987633
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.4e-27 Score=222.83 Aligned_cols=246 Identities=17% Similarity=0.363 Sum_probs=209.6
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCC--EEEEEECCCEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ--WVVAGADDMFIRV 83 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~v 83 (914)
.....+..|.++|++++.+ ++++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.+.-. +|++|+.||.|.+
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 3455678899999999997 89999999999999999999999899999999999999999875 8999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
|+......+..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.++.-...-..+. -+.+.|+| .+.+|+.++.
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~-~Gd~F~v~~~ 188 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSP-QGDHFVVSGR 188 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcC-CCCEEEEEec
Confidence 99999999999999999999999999999999999999999999988743333322333 34589999 7888888776
Q ss_pred CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEE--eCCC
Q 002511 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF--HPEL 241 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~ 241 (914)
+ .|-+|.+.+......+. ....+.|+.|...+ ++++|++++.|.+||..+..+...+.+|...|.++.+ .|++
T Consensus 189 ~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~---~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIE-NPKRILCATFLDGS---ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred c-EEEEEecccHhHhhhhh-ccccceeeeecCCc---eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 4 68899987765544443 23556666664333 7999999999999999999999999999999999884 4678
Q ss_pred CEEEEEECCCeEEEEeCCCc
Q 002511 242 PIIITGSEDGTVRIWHATTY 261 (914)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~ 261 (914)
.+|+++|.||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999998865
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=247.62 Aligned_cols=283 Identities=21% Similarity=0.376 Sum_probs=247.3
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCcee--EEeeecCCCeEE-EEEec-CCCEEEEEECCC
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRS-AKFVA-RKQWVVAGADDM 79 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~~~~~~v~~-~~~s~-~~~~l~~g~~dg 79 (914)
..++.+.+.+|...|+.++..+.. ++++++.||++++|+-..++.+ ..+.+|.+-|.+ +++.+ ++-.+++|+.|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 356778899999999999987655 7899999999999996555443 346667777766 77775 445699999999
Q ss_pred EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
+|.+|...+..++.++.+|...|.|+....++. +++||.|.++++|-... +...+.+|+..|+++..-| + +.++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~-e-~~~v 155 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLP-E-NTYV 155 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecC-C-CcEE
Confidence 999999999999999999999999999888886 99999999999998653 4556899999999999998 3 4999
Q ss_pred EEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeC
Q 002511 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 160 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 239 (914)
+|+.|.+|++|.- ++...++.+|...|..+++-+++. +++++.||.|++|++ +|.++..+.+|..-|.+++..+
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC
Confidence 9999999999974 778899999999999999998875 999999999999998 6999999999999999999888
Q ss_pred CCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCC
Q 002511 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~ 302 (914)
++..++++++|++++||+.. .+.+.+..+...+|++.+-++|. +++|++||.|++|....
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 88899999999999999966 78888888888999999998876 78899999999985443
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4e-28 Score=221.90 Aligned_cols=286 Identities=19% Similarity=0.317 Sum_probs=239.2
Q ss_pred EEeeecCCCeEEEEEec---CCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 51 KSFEVTELPVRSAKFVA---RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~---~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
.+-.+|..||..++||| +|-+|++++.||.-.+-+-+||..+.+|.+|.+.|.+...+.+..+-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45568999999999986 888999999999999999999999999999999999999999888889999999999999
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
.-++.. ...+ .|.+-|.+++|+. |.+.|++|+.+..++|||++..+ +...+.+|.+.|..+-|....+ .|++.+
T Consensus 88 a~tgde-lhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~--~iLSSa 162 (334)
T KOG0278|consen 88 AVTGDE-LHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK--CILSSA 162 (334)
T ss_pred hhhhhh-hhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc--eEEeec
Confidence 988843 3444 4778899999998 89999999999999999998765 5677889999999999998766 688889
Q ss_pred cCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEE
Q 002511 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRI 286 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 286 (914)
.|++|++||.+++..++++. ...+|+++.++++|++|.+ ...+.|.+||..+..++..+..+ ..|.+.+.+|+...+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFF 239 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc-cccccccccCCCceE
Confidence 99999999999999999998 6778999999999986655 45779999999999999888766 678999999999999
Q ss_pred EEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002511 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (914)
Q Consensus 287 ~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (914)
++|+.|+.++.+ +..+|+.+... ...+..+|.++.|+|+|.
T Consensus 240 VaGged~~~~kf------------------------------------Dy~TgeEi~~~---nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 240 VAGGEDFKVYKF------------------------------------DYNTGEEIGSY---NKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred EecCcceEEEEE------------------------------------eccCCceeeec---ccCCCCceEEEEECCCCc
Confidence 999999888762 23333333220 144555667777777777
Q ss_pred EEEEEc-CCcEEEEEeec
Q 002511 367 FVVVCG-DGEYIIYTALA 383 (914)
Q Consensus 367 ~lav~~-~~~~~i~~~~~ 383 (914)
..|+++ ||.+++|....
T Consensus 281 ~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eeeccCCCceEEEEEecC
Confidence 777777 77777775543
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.2e-28 Score=250.68 Aligned_cols=277 Identities=17% Similarity=0.292 Sum_probs=237.1
Q ss_pred EEEEcC-CCCEEEEEecCCcEEEEeCCCCc------eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC--e
Q 002511 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQT------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM--D 90 (914)
Q Consensus 20 ~~~~sp-~~~~la~~~~~g~v~iwd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~--~ 90 (914)
.+..++ .+++|++|+.||.|++|++.... .+.+++.|...|+.+....+|+.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 455554 56679999999999999976432 35677889999999999999999999999999999999877 5
Q ss_pred eeEEEecCCCCEEEEEE-eCCCCEEEEEEcCCeEEEEECCCCce---------EEEEee-cCcccEEEEEEccCCCCEEE
Q 002511 91 KVKVFEAHTDYIRCVAV-HPTLPYVLSSSDDMLIKLWDWEKGWM---------CTQIFE-GHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 91 ~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~i~~~~~~p~~~~~l~ 159 (914)
++.++..|.++|.|+++ -++...+++|+-|+.|.+||++++.. ....+. ++..+|.+++.++ .+..|+
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEE
Confidence 67888999999999999 78888999999999999999996622 122233 7888999999999 788999
Q ss_pred EEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeC
Q 002511 160 SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 160 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 239 (914)
+|+..+.|++||.++.+.+..+.+|...|.++..+++|. .++++++||+|++||+...+|+.++..|...|+++..+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 999999999999999999999999999999999999988 699999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 240 ELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
+-..+.+|+.||.|..=|+++......+-....+|..+..+...+-+-+++.|+.|.-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 999999999999999999998654443434446677777765555557777888887763
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=256.96 Aligned_cols=248 Identities=16% Similarity=0.359 Sum_probs=207.9
Q ss_pred hhcc-cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC--------------------------------C--------
Q 002511 9 RKLA-QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------------------------------Q-------- 47 (914)
Q Consensus 9 ~~l~-~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~--------------------------------~-------- 47 (914)
+.+. .|.+.|.+|.||+||+|||+|+.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 8999999999999999999999999999998654 0
Q ss_pred --------------------ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEE
Q 002511 48 --------------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (914)
Q Consensus 48 --------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~ 107 (914)
++++.|.+|.+.|..+.||.++ +|++++.|.+|++|++...++++.|. |.+.|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 1344567899999999999775 89999999999999999999999997 9999999999
Q ss_pred eC-CCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe----
Q 002511 108 HP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---- 182 (914)
Q Consensus 108 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 182 (914)
+| |.+|+++|+-||.|+||++... +...-.. -...|++++|.| +|+..++|+.+|.+++|+....+......
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~D-l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDK-KVVDWND-LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred cccCCCcEeecccccceEEeecCcC-eeEeehh-hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99 6789999999999999999876 4443333 347799999999 89999999999999999998766544331
Q ss_pred ----cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCccc--ceEEEEEeCCCCEEEEEECCCeEEEE
Q 002511 183 ----AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIW 256 (914)
Q Consensus 183 ----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~v~iw 256 (914)
...+.|+.+.+.|.... -+++.+.|..|+|+|.++...+..++++.. .-....|+.||++|+++++|..|++|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~-~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPD-EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCC-eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 11237999999987654 578888899999999998888888887543 23567899999999999999999999
Q ss_pred eCCCce
Q 002511 257 HATTYR 262 (914)
Q Consensus 257 d~~~~~ 262 (914)
+.....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 975443
No 90
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.6e-26 Score=251.73 Aligned_cols=265 Identities=18% Similarity=0.251 Sum_probs=208.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCcee-------------EEeeecCCCeEEEEEec-CCCEEEEEECCC
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-------------KSFEVTELPVRSAKFVA-RKQWVVAGADDM 79 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg 79 (914)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3445666777778666666666666667765433221 24678999999999999 889999999999
Q ss_pred EEEEEECCCC-------eeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEc
Q 002511 80 FIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (914)
Q Consensus 80 ~i~vwd~~t~-------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (914)
+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++|++||+.++ .....+.+|...|.+++|+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEE
Confidence 9999999765 3467788999999999999985 68999999999999999987 6677788899999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCe-eEEEEeeCCCcCEEEEEE----cCCeEEEEECCCCc-eEEEe
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-NCVDYFTGGDKPYLITGS----DDHTAKVWDYQTKS-CVQTL 225 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~~~~ 225 (914)
| ++++|++++.|++|++||+++++.+..+.+|.+.. ..+.|.++++ .+++++ .|+.|++||+++.. ++...
T Consensus 178 p-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~--~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 L-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD--LIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred C-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC--eEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 9 89999999999999999999999888888887653 4677887665 455543 47899999998754 44433
Q ss_pred cCc-ccceEEEEEeCCCCEEEEEE-CCCeEEEEeCCCceeEEEeecC-CccEEEEEEecC
Q 002511 226 EGH-THNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKS 282 (914)
Q Consensus 226 ~~~-~~~v~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~ 282 (914)
..+ ...+....|++++++|++++ .||.|++||+.+++........ ..++..++|.|.
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 323 33466677999999999887 5999999999988876655443 345667777764
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-28 Score=221.26 Aligned_cols=242 Identities=19% Similarity=0.333 Sum_probs=211.1
Q ss_pred CCCEEEEEEcCC-CCEEEEEecCCcEEEEeCCC-CceeEEeeecCCCeEEEEEecC-CCEEEEEECCCEEEEEECCCCee
Q 002511 15 SERVKSVDLHPS-EPWILASLYSGTVCIWNYQS-QTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 15 ~~~v~~~~~sp~-~~~la~~~~~g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
.+.+..++|+++ .+.+++++.||+++|||... ..++..++.|...|.++.|++. +..++++|-|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 567899999995 45778888899999999543 3577888999999999999984 55677888999999999999999
Q ss_pred eEEEecCCCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
+.++.+|...|....|+|. .+.+++++.||++++||++...+.. .+..|...|.++.|+.-+.+.+++|+.|+.|++|
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999995 5688999999999999999763443 4788999999999999889999999999999999
Q ss_pred ECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEEEEEeC-CCCEEEEE
Q 002511 171 NLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP-ELPIIITG 247 (914)
Q Consensus 171 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~ 247 (914)
|+++- .++..+.+|.-.|..+.|+|.... +|++++.|-+++|||... ...+.+...|..-+..+.|++ +..+++++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~-lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHAS-LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhh-HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeec
Confidence 99874 578889999999999999998765 899999999999999874 445666777888899999998 45689999
Q ss_pred ECCCeEEEEeC
Q 002511 248 SEDGTVRIWHA 258 (914)
Q Consensus 248 ~~dg~v~iwd~ 258 (914)
+.|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=231.01 Aligned_cols=279 Identities=25% Similarity=0.357 Sum_probs=231.3
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe--------cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--------AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
....+.|..|||||++|++|+.||.|.+||+.+|+..+.++ -+.++|.|+.|+.|...+++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 45678999999999999999999999999999998765443 4678999999999999999999999999999
Q ss_pred CCCCceEEEEee-cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 128 WEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
+.++ .+.+.+. .|+..|+|+.|+. |+..+++++.|.++++--+.+|+.+..+++|...|+...|.++|. ++++++
T Consensus 292 i~tG-~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~--~iisaS 367 (508)
T KOG0275|consen 292 IETG-QCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH--HIISAS 367 (508)
T ss_pred Eecc-hHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC--eEEEec
Confidence 9999 5555554 8999999999998 889999999999999999999999999999999999999999998 799999
Q ss_pred cCCeEEEEECCCCceEEEecCc--ccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCceeEEEeecC---CccEEEEEEe
Q 002511 207 DDHTAKVWDYQTKSCVQTLEGH--THNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYG---LERVWAIGYM 280 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~i~~~ 280 (914)
.||+|++|+..+..|+.+++.. ..+|.++-.-|.. ..++++...++|+|.++. |+.++++... .+...+...+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999999999988754 4467888877754 478888888899999976 7888877654 3567788899
Q ss_pred cCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002511 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (914)
Q Consensus 281 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (914)
|.|.++.+.+.|+.++.+... +|++- ..+.-++..+-.++
T Consensus 447 pkGewiYcigED~vlYCF~~~---------sG~LE-------------------------------~tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVL---------SGKLE-------------------------------RTLPVHEKDVIGLT 486 (508)
T ss_pred CCCcEEEEEccCcEEEEEEee---------cCcee-------------------------------eeeecccccccccc
Confidence 999999999999998873111 11111 01122333455778
Q ss_pred ECCCCCEEEEEc-CCcEEEE
Q 002511 361 HNPNGRFVVVCG-DGEYIIY 379 (914)
Q Consensus 361 ~s~~g~~lav~~-~~~~~i~ 379 (914)
++|....+|+.+ ||.+.+|
T Consensus 487 HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 487 HHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cCcccchhhhhcccchhhhc
Confidence 888888888777 7766666
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=223.97 Aligned_cols=288 Identities=17% Similarity=0.287 Sum_probs=237.7
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC------------------CceeEEeeecCCCeEEEEEecCCCE
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------------------QTMAKSFEVTELPVRSAKFVARKQW 71 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~ 71 (914)
.+..|.+++.+-+|||||.++|+|+.|..|+|.|++. ...++++-.|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4678999999999999999999999999999999861 1356777789999999999999999
Q ss_pred EEEEECCCEEEEEECCCCeeeEEEe--cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE---eecCcccEE
Q 002511 72 VVAGADDMFIRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI---FEGHSHYVM 146 (914)
Q Consensus 72 l~~g~~dg~i~vwd~~t~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~i~ 146 (914)
|++|+.|++|++||+......+.++ ....+|+++.|+|.|.+|++|..-.++++||+++- ++... -.+|.+.|+
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAIT 265 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce-eEeeecCccccccccee
Confidence 9999999999999987432222221 24568999999999999999999999999999986 44332 246889999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe-cCC-CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEE
Q 002511 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQT 224 (914)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 224 (914)
++.+++ .+++.++++.||.|++||--+++++.++. .|. ..|.+..|..++. |+++.+.|..+++|.+.+++++..
T Consensus 266 ~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k--yiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 266 QVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK--YILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred EEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe--EEeecCCcceeeeeeecCCceEEE
Confidence 999999 89999999999999999998888887774 444 4577888888776 999999999999999999999988
Q ss_pred ecCcc-----cceEEEEEeCCCCEEEEEE-CCCeEEEEeCCCceeEEEee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 225 LEGHT-----HNVSAVCFHPELPIIITGS-EDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 225 ~~~~~-----~~v~~i~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
..+-. .--+...|+....+++.-. ..+.+.-||.++......+. +|.+.+..+.-||.+.-+.++++|-..++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 86531 1124455777667776654 34679999999887655443 57789999999999999999999999999
Q ss_pred EcCC
Q 002511 298 KIGR 301 (914)
Q Consensus 298 ~~~~ 301 (914)
|-.+
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 9543
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-26 Score=218.88 Aligned_cols=270 Identities=18% Similarity=0.295 Sum_probs=218.9
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCC-Ccee-EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC
Q 002511 13 QRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQS-QTMA-KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 13 ~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~ 89 (914)
.-.+.|.+++||| ...++++++-||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 556666888899999999987 3332 445569999999999999999999999999999999998
Q ss_pred eeeEEEecCCCCEEEEEEeCCCC--EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
.+..+..|.++|.++.|-+... .|++||.|.+|+.||.+....+. .+. -..++.++..- ..+++++..++.|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-t~~-LPeRvYa~Dv~---~pm~vVata~r~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-TLQ-LPERVYAADVL---YPMAVVATAERHI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee-eee-ccceeeehhcc---CceeEEEecCCcE
Confidence 5677788999999999988665 79999999999999999873333 332 23456666543 4688899999999
Q ss_pred EEEECCCCCCcEEE--ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC--ceEEEecCccc---------ceEE
Q 002511 168 KIWNLGSPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK--SCVQTLEGHTH---------NVSA 234 (914)
Q Consensus 168 ~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~ 234 (914)
.+|+++++...+.. ...+-.+.|++..++.++ .+.|+-+|.+.|..+..+ +.-.+|+.|.. .|.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 99999776433221 234456889999999885 699999999999988775 33344555542 4788
Q ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 235 i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
|+|+|....|++.|.||++.+||-.....+.+...+..+|++.+|+.+|.++|.+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999989999999999999999887778888888889999999999999988654
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=254.36 Aligned_cols=272 Identities=26% Similarity=0.419 Sum_probs=245.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEE-eeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~ 92 (914)
|...+.+..|+ ..++++++.++++++|+..++..+.. +.+|.+.|.++++...+.++++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678899998 55689999999999999999988888 9999999999999988899999999999999999999999
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 002511 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 93 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
.++.+|.+.|.++...+ .++++|+.|.+|++|++.++ .+..++.+|..+|.++..+ +..+++|+.|++|++||+
T Consensus 285 ~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~-~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG-ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCc-ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEh
Confidence 99999999999998864 46888999999999999988 8888888899999999986 689999999999999999
Q ss_pred CCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-ceEEEecCcccceEEEEEeCCCCEEEEEECCC
Q 002511 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (914)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 251 (914)
.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.++ +++.++.+|..-+..+.+ .+++|++++.||
T Consensus 359 ~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 359 RTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADG 433 (537)
T ss_pred hhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccc
Confidence 999999999999999999977543 37999999999999999999 999999999988866555 456899999999
Q ss_pred eEEEEeCCCceeEEEeec-CCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 252 TVRIWHATTYRLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
+|++||..+++++.++.. +...|..+++. ...+++++.+|.+.+|..
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 999999999999999988 56788888876 467999999999999843
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-27 Score=236.74 Aligned_cols=238 Identities=22% Similarity=0.323 Sum_probs=208.7
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (914)
..+|.+++|+|...+=++....-.+.+|+..+....+.+....+.+.+++|..||.++++|...|.|+++|..+ +....
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHHH
Confidence 35799999999765533334446799999999888888887888999999999999999999999999999665 36778
Q ss_pred EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 137 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
.+..|+.++..+.|+|.++..|++|+.|+.+++||+.+......+.+|...|.|.+|+|..+. ++++|+.||.|++||+
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h-ivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH-IVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe-EEEecCCCceEEEEEe
Confidence 888999999999999999999999999999999999998876688999999999999998765 8999999999999999
Q ss_pred CCC-ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce-eEEEeecCCccEEEEEEecCCCEEEEEecCCe
Q 002511 217 QTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (914)
Q Consensus 217 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (914)
+.. ..+.++. |..+|.++.+-|.|..|++++. ..|++||+.+|. .+.....|...|+|+.+..++..|.+|+-|+.
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 986 6667776 9999999999999999999884 489999999665 44555558899999999999999999999999
Q ss_pred EEEE
Q 002511 295 IMVK 298 (914)
Q Consensus 295 i~i~ 298 (914)
+.++
T Consensus 262 VKVf 265 (487)
T KOG0310|consen 262 VKVF 265 (487)
T ss_pred eEEE
Confidence 9985
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3e-26 Score=217.18 Aligned_cols=268 Identities=22% Similarity=0.364 Sum_probs=223.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
-.+.|++|.|+|.+..|++++-||.+++|++........+. |..++.+++|.++ ..+++|+.||.|+.+|++++.. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-D 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-e
Confidence 46789999999999999999999999999999887666666 8999999999874 5699999999999999998654 4
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 002511 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 173 (914)
.+..|..+|+|+.+++-...+++|+.|++|++||.+.. .....+. ....|.++..+ ++.|++|+.+..+.+||++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEecc---CCEEEEeecCceEEEEEcc
Confidence 55679999999999998889999999999999999974 3333333 23478888774 6899999999999999999
Q ss_pred CCCCcEEE--ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC----ceEEEecCcc---------cceEEEEEe
Q 002511 174 SPDPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGHT---------HNVSAVCFH 238 (914)
Q Consensus 174 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~i~~~ 238 (914)
+.....+. ...+..+.|+++.|++.+ +++++-+|.|.+=.+... +....|+.|. .+|.+++|+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eG--y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEG--YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCc--eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 87654432 234567899999997775 888999999988655544 2334455443 368999999
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEec
Q 002511 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
|-...|+||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||++++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99899999999999999999999999888887788999999999999999875
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-25 Score=211.59 Aligned_cols=248 Identities=19% Similarity=0.253 Sum_probs=212.0
Q ss_pred CceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc--CCeEE
Q 002511 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD--DMLIK 124 (914)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~ 124 (914)
.+..+.|....+.|.++.|+++|..+++++.|..+++||..+++.++++..+.-.+..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566667789999999999999999999999999999999999999988888999999888878877776 88999
Q ss_pred EEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
..++.++ +..+.+.||...|.+++.+| .++.|++++.|++|++||++..++...+..... ..++|.|.|- ++++
T Consensus 84 yLsl~dN-kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL--ifA~ 157 (311)
T KOG1446|consen 84 YLSLHDN-KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL--IFAL 157 (311)
T ss_pred EEEeecC-ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc--EEEE
Confidence 9999988 89999999999999999999 669999999999999999998887766654433 4678888876 7777
Q ss_pred EEcCCeEEEEECCC--CceEEEecC---cccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCcc---EEE
Q 002511 205 GSDDHTAKVWDYQT--KSCVQTLEG---HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLER---VWA 276 (914)
Q Consensus 205 ~~~dg~i~iwd~~~--~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---v~~ 276 (914)
+.....|++||++. +.+..++.. .....+.+.|+|+|++++.++..+.+++.|.-+|....++..+... --+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 77777999999986 334444433 3567899999999999999999999999999999998888766433 257
Q ss_pred EEEecCCCEEEEEecCCeEEEEcC
Q 002511 277 IGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 277 i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
.+|+||++++.+|++||++.+|..
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEc
Confidence 889999999999999999999854
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=221.50 Aligned_cols=289 Identities=18% Similarity=0.279 Sum_probs=248.3
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
.+.+.+.|.||.+.|+.++.....+.+.+++.|.+.+||.+++|.++..+.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC----------------------------------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeE
Q 002511 84 YNY------NT----------------------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (914)
Q Consensus 84 wd~------~t----------------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 123 (914)
|.. .. ..++..+.+|.+.|.+..|...|+.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 00 01355677899999999999999999999999999
Q ss_pred EEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEE
Q 002511 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (914)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (914)
.+||++++ .+...+.+|....+.++-+| ...++++++.|.+.++||.+.. ..+..+.+|...|+++.|..+.+ +
T Consensus 297 nlwDVEtg-e~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~---v 371 (481)
T KOG0300|consen 297 NLWDVETG-EVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR---V 371 (481)
T ss_pred eeeeeccC-ceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc---e
Confidence 99999999 88999999999999999999 8889999999999999999843 34567899999999999987765 9
Q ss_pred EEEEcCCeEEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEE----EeecCCccEEEE
Q 002511 203 ITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN----TLNYGLERVWAI 277 (914)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~i 277 (914)
++|++|.+|++||+++.. ++.++. ..+++..++.+..+++|+.--.+..|++||++..++.+ .-++|..-|.|+
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred eecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeee
Confidence 999999999999999754 566776 56789999999999999999889999999988555322 334566779999
Q ss_pred EEecCC--CEEEEEecCCeEEEE
Q 002511 278 GYMKSS--RRIVIGYDEGTIMVK 298 (914)
Q Consensus 278 ~~~~~~--~~l~~~~~dg~i~i~ 298 (914)
+|..+. .-|++++-|..+.-|
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eccccCcccccccccccceeeee
Confidence 998653 235555556655554
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-27 Score=246.53 Aligned_cols=244 Identities=22% Similarity=0.310 Sum_probs=221.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeee-cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~ 92 (914)
+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 478999999999999999999999999999999999999998 99999999998 667999999999999999987765
Q ss_pred EE-EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC--CCcEEE
Q 002511 93 KV-FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL--DRTIKI 169 (914)
Q Consensus 93 ~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~--dg~i~v 169 (914)
.. +.+|...|..+.|++|+.++++|+.|+.+.|||.... .+...+..|...|..++|+|-..++||+|+. |++|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 55 7899999999999999999999999999999999665 6777888999999999999988999999754 899999
Q ss_pred EECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC
Q 002511 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (914)
Q Consensus 170 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 249 (914)
||..++..+..+. ....|..+.|++..+......|..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.
T Consensus 373 wn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 373 WNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred EEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 9999998877765 567899999999987633334566789999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCc
Q 002511 250 DGTVRIWHATTY 261 (914)
Q Consensus 250 dg~v~iwd~~~~ 261 (914)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998764
No 101
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-24 Score=221.97 Aligned_cols=446 Identities=15% Similarity=0.202 Sum_probs=315.5
Q ss_pred hhcccC-CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 9 RKLAQR-SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 9 ~~l~~h-~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
..+.++ ...|-+++|++.+ .|.+.+.+|.|.-||+.+++....+....++|.+++.+|.+..+++|++||.+..++..
T Consensus 62 ~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 344454 4579999999655 57787889999999999999999999999999999999999999999999988888888
Q ss_pred CCeeeE--EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE---e----ecCcccEEEEEEccCCCCEE
Q 002511 88 TMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI---F----EGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 88 t~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~----~~~~~~i~~~~~~p~~~~~l 158 (914)
.++... .+....+.|.+++|+|++..|++|+.||.|++||..++...... + .+...-|+++.|-. .+.+
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI 218 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTI 218 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcE
Confidence 776543 34556789999999999999999999999999999987444311 1 11234577777774 6789
Q ss_pred EEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce----EEEecCcccceEE
Q 002511 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC----VQTLEGHTHNVSA 234 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~ 234 (914)
++|...|+|.+||...++.+..+..|...|.+++..++++ ++++++.|+.|..|...++.. ......|...|.+
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d--~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED--RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC--eEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 9999999999999999999999999999999999998877 799999999999988776533 2233567888999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcE
Q 002511 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKI 314 (914)
Q Consensus 235 i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~ 314 (914)
++..++ .+++|+.|..+.+-.....+... | . .....|.+..+.++..+..+.+|..+....+.+...
T Consensus 297 ~av~~~--~l~sgG~d~~l~i~~s~~~~~~~----h--~--~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~--- 363 (691)
T KOG2048|consen 297 MAVIEN--ALISGGRDFTLAICSSREFKNMD----H--R--QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV--- 363 (691)
T ss_pred eeeecc--eEEecceeeEEEEccccccCchh----h--h--ccccccccceeecCccceEEEEeccccccceeccCc---
Confidence 999987 89999999999887655322111 1 0 112224455566666666666665444433333211
Q ss_pred EEE-eeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeecccc-------
Q 002511 315 IWA-KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRN------- 386 (914)
Q Consensus 315 ~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~------- 386 (914)
+.. ..+....+. +. ......+++-+.||+|+++++++-..+.+|.+....+
T Consensus 364 ~~~g~~~~~~Llk-----------------l~----~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~ 422 (691)
T KOG2048|consen 364 ILQGEYNYIHLLK-----------------LF----TKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVD 422 (691)
T ss_pred ccccccChhhhee-----------------ee----cCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEec
Confidence 000 000001111 11 1122356788999999999999988889997765321
Q ss_pred ---cccCceeEEEEecCCcEEEEec--CCeEEEeccC---cccceeeec----------CcccceeecCcEEEEEeCC-e
Q 002511 387 ---RSFGSALEFVWSSDGEYAVRES--SSKIKIFSKN---FQEKRSVRP----------TFSAERIYGGTLLAMCSND-F 447 (914)
Q Consensus 387 ---~~~~~~~~~~~s~~~~~l~~~~--~~~i~v~~~~---~~~~~~~~~----------~~s~~~i~~g~~La~~~~~-~ 447 (914)
.....+..+.|+-|+..++..+ ...+.+++.. +++...+.. ..|++ |+++|+.+.. .
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd----G~yiaa~~t~g~ 498 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD----GNYIAAISTRGQ 498 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC----CCEEEEEeccce
Confidence 1223567788888876555444 4666666543 222222111 44566 9999988876 9
Q ss_pred EEEEeccCCcE---EEEEEcceeEEEEcC-CCCEE-EEEeCCeEEEEEecHHHHH
Q 002511 448 ICFYDWAECRL---IRRIDVTVKNLYWAD-SGDLV-AIASDTSFYILKYNRDVVS 497 (914)
Q Consensus 448 i~~~d~~~~~~---i~~~~~~i~~v~~s~-dg~~l-a~~~~~~~~~~~~~~~~~~ 497 (914)
|.+|++++++. +.++...++.+.++| +...| +..++..++-++.+...+.
T Consensus 499 I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~ 553 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLT 553 (691)
T ss_pred EEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhh
Confidence 99999998863 224556899999994 44444 4445666777766444443
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=199.92 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=229.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC------C------c---eeEEeeecCCCeEEEEEecCCCEEEEEECC
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------Q------T---MAKSFEVTELPVRSAKFVARKQWVVAGADD 78 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~------~------~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 78 (914)
.+..|.+++|+|.|.+.|+|+...+.+|--+.. + . .-+.-+.|.+.|.|.+|||+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 567899999999999999999999988875432 1 0 112334588999999999999999999999
Q ss_pred CEEEEEECCCCee-----eEEEecCCCCEEEEEEeCC----CCEEEEEE-cCCeEEEEECCCCceEEEEeecCcccEEEE
Q 002511 79 MFIRVYNYNTMDK-----VKVFEAHTDYIRCVAVHPT----LPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (914)
Q Consensus 79 g~i~vwd~~t~~~-----~~~~~~~~~~i~~~~~s~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (914)
..|++.-++...+ -..+.-|.+.|+.++|-.+ +..|++++ .|..|++-|...+ +..+.+.+|.+.|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE
Confidence 9999986653322 2356779999999999653 34566554 4677888888887 7778889999998887
Q ss_pred -EEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec--C-----CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc
Q 002511 149 -TFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--H-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220 (914)
Q Consensus 149 -~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 220 (914)
.| ++-.|++|+.|.+|++||++-..++.++.. | ...|..++..|.|. +|++|-.|....+||++.++
T Consensus 190 ysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr--ll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 190 YSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR--LLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc--eeeeccCCCceEEEEeeCCc
Confidence 35 478999999999999999998877776632 2 25688899988887 89999999999999999999
Q ss_pred eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc----eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 221 CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 221 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
.++.+..|...|.++.|+|...++++++.|..|++-|+... -.+.....|...+..+.|.|..-.+++.+.|.+..
T Consensus 265 ~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 99999999999999999999999999999999999998632 13345556788899999999999999999999999
Q ss_pred EEc
Q 002511 297 VKI 299 (914)
Q Consensus 297 i~~ 299 (914)
+|.
T Consensus 345 lwa 347 (350)
T KOG0641|consen 345 LWA 347 (350)
T ss_pred Eec
Confidence 984
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.6e-27 Score=249.94 Aligned_cols=250 Identities=19% Similarity=0.326 Sum_probs=206.9
Q ss_pred eeEEee-ecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC---------------------------------------
Q 002511 49 MAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--------------------------------------- 88 (914)
Q Consensus 49 ~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t--------------------------------------- 88 (914)
..+.+. .|.+.|.++.||+||++||+|+.||.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334555 7999999999999999999999999999997643
Q ss_pred ---------------------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEE
Q 002511 89 ---------------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (914)
Q Consensus 89 ---------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (914)
.+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++... .++..|. |...|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-ECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-ceeeEEe-cCCeeEE
Confidence 02234456899999999999865 8999999999999999976 7888775 8999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC
Q 002511 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG 227 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 227 (914)
++|+|.|.++|++|+.||.|++|++...+... ...-..-|++++|.|+|+ +.++|+.+|.+++|++...+....+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk--~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGK--GAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCc--eEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999999999999999999999997765443 344458899999999988 799999999999999987665544321
Q ss_pred --------cccceEEEEEeCCCC-EEEEEECCCeEEEEeCCCceeEEEeecC--CccEEEEEEecCCCEEEEEecCCeEE
Q 002511 228 --------HTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 228 --------~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
....|+.+.|.|... .|++.+.|..|||+|.++..++..+.+. ...-...+|+.||++|+++++|..|+
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 122799999998554 5778889999999999888887777754 23456778999999999999999999
Q ss_pred EEcCCCcc
Q 002511 297 VKIGREEP 304 (914)
Q Consensus 297 i~~~~~~~ 304 (914)
+|.....+
T Consensus 572 iW~~~~~~ 579 (712)
T KOG0283|consen 572 IWKNDSFN 579 (712)
T ss_pred EEeCCCCc
Confidence 99765443
No 104
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.3e-25 Score=242.60 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=192.7
Q ss_pred EecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC-CCEEEEEECCCEEEEEECCCCe--------eeEEEecCCCCEE
Q 002511 33 SLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMD--------KVKVFEAHTDYIR 103 (914)
Q Consensus 33 ~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~t~~--------~~~~~~~~~~~i~ 103 (914)
|+..|.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 345778999998887788889999999999999997 7899999999999999997642 3446788999999
Q ss_pred EEEEeCCCCEE-EEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe
Q 002511 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD 182 (914)
Q Consensus 104 ~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 182 (914)
+++|+|++..+ ++++.|++|++||++++.. ...+. |...|.+++|+| ++++|++++.|++|++||+++++.+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999998765 6889999999999998843 33343 557899999999 89999999999999999999999988999
Q ss_pred cCCCCeeEEEE-----eeCCCcCEEEEEEcCC----eEEEEECCC-CceEEEecC--cccceEEEEEeCCCCEEEEEECC
Q 002511 183 AHQKGVNCVDY-----FTGGDKPYLITGSDDH----TAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 183 ~~~~~v~~~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d 250 (914)
+|.+.+.+..+ ++++. +|++++.++ .|+|||+++ +.++..+.. +.+.+......++|.++++|+.|
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~--~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDN--YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCC--EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 99887654443 24444 788877664 799999995 556655432 22333334445568899999999
Q ss_pred CeEEEEeCCCceeE--EEeecCCccEEEEEEecCC
Q 002511 251 GTVRIWHATTYRLE--NTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 251 g~v~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~ 283 (914)
+.|++|++..+... ..+. +..++.+++|.|..
T Consensus 285 ~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 285 GNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 99999999876432 2222 34677889998864
No 105
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.1e-23 Score=219.97 Aligned_cols=426 Identities=14% Similarity=0.224 Sum_probs=285.0
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCC---EEEEEECCCEEEEEECCCCe--eeEE
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYNTMD--KVKV 94 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~g~~dg~i~vwd~~t~~--~~~~ 94 (914)
...|.|.+ .+|.| ....|.+||..+......+.+|..+|+|+.|-|+.+ ++++|+.|+.|.+|.++... ++..
T Consensus 19 v~sw~~~~-~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 19 VSSWGPGG-LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccccc-eEEec-CCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 34455544 35555 467899999877777888999999999999999887 89999999999999987333 3455
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-eEEEEeecCc--ccEEEEEEccC-CCCEEEEEeCCCcEEEE
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHS--HYVMQVTFNPK-DTNTFASASLDRTIKIW 170 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~--~~i~~~~~~p~-~~~~l~~~~~dg~i~vw 170 (914)
+.+|.. .+++++.....+.+.+.|+.+.+||.+... .+...+.... ....|+++.|+ +.-.++.|+.+..|.++
T Consensus 97 ~~g~~~--~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~ 174 (764)
T KOG1063|consen 97 IQGHCK--ECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLY 174 (764)
T ss_pred ecCcce--eEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEe
Confidence 566554 455555433333334789999999995442 1222222221 22345555552 33345667777778887
Q ss_pred ECCCC--CCcEEEecCCCCeeEEEEeeCCC-cCEEEEEEcCCeEEEEECCCCc---------------------eEE---
Q 002511 171 NLGSP--DPNFTLDAHQKGVNCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKS---------------------CVQ--- 223 (914)
Q Consensus 171 d~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~---------------------~~~--- 223 (914)
.-... +....+.+|..-|.+++|...+. ..++++++.|..|+||.+.-+. ...
T Consensus 175 s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~ 254 (764)
T KOG1063|consen 175 SSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ 254 (764)
T ss_pred ccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEE
Confidence 65433 45667889999999999987665 6688999999999999864221 111
Q ss_pred -------EecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc--eeE-----EEeecCCccEEEEEEecCCCEEEEE
Q 002511 224 -------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLE-----NTLNYGLERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 224 -------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~-----~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (914)
.+.+|...|.++.|+|.+..|++++.|.++.+|...+. --+ ....+.....++..|+|+++.+++-
T Consensus 255 ~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~ 334 (764)
T KOG1063|consen 255 YRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH 334 (764)
T ss_pred EEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence 12489999999999999999999999999999986543 222 2222334568999999999999999
Q ss_pred ecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEE
Q 002511 290 YDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVV 369 (914)
Q Consensus 290 ~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~la 369 (914)
+..|..++|...+....... .-+.++...++.+.|+|.|.||.
T Consensus 335 g~~Gg~hlWkt~d~~~w~~~-------------------------------------~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 335 GRTGGFHLWKTKDKTFWTQE-------------------------------------PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred cccCcEEEEeccCccceeec-------------------------------------cccccccccceeeeecCCCCEEE
Confidence 99999999853222211111 01245555677888888888777
Q ss_pred EEc-CCcEEEEEee----cc----ccc-ccCceeEEEEec-CCcEEEEecCCeEEEeccC--------------------
Q 002511 370 VCG-DGEYIIYTAL----AW----RNR-SFGSALEFVWSS-DGEYAVRESSSKIKIFSKN-------------------- 418 (914)
Q Consensus 370 v~~-~~~~~i~~~~----~~----~~~-~~~~~~~~~~s~-~~~~l~~~~~~~i~v~~~~-------------------- 418 (914)
+.+ |.+.++|..- .| |+. +--..+|++|-+ +-+++-.+...-+++|+..
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~ 457 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDE 457 (764)
T ss_pred EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchh
Confidence 666 7666666332 11 111 112346666665 3333333334555666510
Q ss_pred -----------------c----------------------------------------ccc--------eeeecCcccce
Q 002511 419 -----------------F----------------------------------------QEK--------RSVRPTFSAER 433 (914)
Q Consensus 419 -----------------~----------------------------------------~~~--------~~~~~~~s~~~ 433 (914)
+ ++. .....+.+|+
T Consensus 458 ~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~- 536 (764)
T KOG1063|consen 458 LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT- 536 (764)
T ss_pred cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC-
Confidence 0 000 0000022222
Q ss_pred eecCcEEEEEeCC------eEEEEeccCCcEEEEEEc---ceeEEEEcCCCCEEEEEeCCeEEEEE
Q 002511 434 IYGGTLLAMCSND------FICFYDWAECRLIRRIDV---TVKNLYWADSGDLVAIASDTSFYILK 490 (914)
Q Consensus 434 i~~g~~La~~~~~------~i~~~d~~~~~~i~~~~~---~i~~v~~s~dg~~la~~~~~~~~~~~ 490 (914)
|+++|++... .|++|+..+...+..+.+ .|+.++|||||++|++++.|+.+-+|
T Consensus 537 ---gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 537 ---GNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred ---CCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 7888886543 799999998887776664 79999999999999999999999776
No 106
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=249.03 Aligned_cols=247 Identities=27% Similarity=0.460 Sum_probs=224.4
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
...+.||.+.|+++++..-+.+|++|+.|.+++|||+.+|.+..++.+|...|.++... +..+++|+.|.+|++|++.
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 34489999999999999888899999999999999999999999999999999998874 4568888999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
++..+..+.+|.++|+++..+ +.++++|+.||+|++||+.++ ++...+.+|.++|.++.+.+ . +.+++|+.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecC-c-ceEEeeeeccce
Confidence 999999999999999999998 789999999999999999987 89999999999999998865 2 899999999999
Q ss_pred EEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC-cccceEEEEEeCCCCEEE
Q 002511 168 KIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HTHNVSAVCFHPELPIII 245 (914)
Q Consensus 168 ~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~ 245 (914)
++||+.+. +++.++.+|...+..+.+. ++ +|++++.|++|++||..++++++++.+ |...|+++++. ...++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~--~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVSSLLLR--DN--FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEIL 468 (537)
T ss_pred EeecCCchhhhhhhhcCCcccccccccc--cc--eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEE
Confidence 99999999 8999999999888766653 23 799999999999999999999999998 67888888887 45788
Q ss_pred EEECCCeEEEEeCCCceeEEEe
Q 002511 246 TGSEDGTVRIWHATTYRLENTL 267 (914)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~ 267 (914)
+++.||.+++||+.++.....+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 9999999999999999987765
No 107
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.7e-25 Score=243.80 Aligned_cols=227 Identities=15% Similarity=0.228 Sum_probs=185.0
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCCC-------ceeEEeeecCCCeEEEEEecCC-CEEEEEECCCE
Q 002511 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (914)
.+.+|++.|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ ++|++|+.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8889999999999999999765 3466788999999999999985 68999999999
Q ss_pred EEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCccc-EEEEEEccCCCCEEE
Q 002511 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNPKDTNTFA 159 (914)
Q Consensus 81 i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~l~ 159 (914)
|+|||+.+++.+..+..|.+.|.+++|+|+|.+|++++.|+.|++||++++ .....+.+|.+. +..+.|.+ +++.++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~-~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAK-RKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcC-CCCeEE
Confidence 999999999999999999999999999999999999999999999999988 456667777654 45678888 556666
Q ss_pred EEe----CCCcEEEEECCCCCCc-EEEecCC-CCeeEEEEeeCCCcCEEEEEE-cCCeEEEEECCCCceEEEecC-cccc
Q 002511 160 SAS----LDRTIKIWNLGSPDPN-FTLDAHQ-KGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEG-HTHN 231 (914)
Q Consensus 160 ~~~----~dg~i~vwd~~~~~~~-~~~~~~~-~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~ 231 (914)
+++ .|++|++||+++.... .....+. ..+....|+++++ ++++++ .|+.|++||+.++..+..... +..+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~--~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~ 305 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN--LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEP 305 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC--EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCC
Confidence 544 4789999999876533 3333232 3455566777776 677776 599999999998887665543 3446
Q ss_pred eEEEEEeCC
Q 002511 232 VSAVCFHPE 240 (914)
Q Consensus 232 v~~i~~~~~ 240 (914)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 778888885
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=240.06 Aligned_cols=229 Identities=23% Similarity=0.439 Sum_probs=204.7
Q ss_pred cCCCEEEEEECCCEEEEEECCCCe------eeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-eEEEEee
Q 002511 67 ARKQWVVAGADDMFIRVYNYNTMD------KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFE 139 (914)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~t~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 139 (914)
|.+++|++|+.||.|++|+..... .+..++.|.+.|..+....+++.|+++|.|-+|++|+...+. .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 467789999999999999986432 356778999999999999999999999999999999988663 5677888
Q ss_pred cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC----------cEEEe-cCCCCeeEEEEeeCCCcCEEEEEEcC
Q 002511 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP----------NFTLD-AHQKGVNCVDYFTGGDKPYLITGSDD 208 (914)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (914)
.|..+|.|+++-.++..++++|+.|+.|.+||++++.. ...+. ++..+|.+++..+.+. .+++|+..
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t--~ivsGgte 192 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTE 192 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce--EEEecCcc
Confidence 99999999999444889999999999999999987632 11222 6778899999988875 79999999
Q ss_pred CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEE
Q 002511 209 HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVI 288 (914)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 288 (914)
+.+++||.++++.+..+++|...|..+..++||..++++|.||+|++||+...+++.++..|...||++..+|+-..+.+
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeEEE
Q 002511 289 GYDEGTIMV 297 (914)
Q Consensus 289 ~~~dg~i~i 297 (914)
|+.||.|+.
T Consensus 273 G~rd~~i~~ 281 (735)
T KOG0308|consen 273 GGRDGNIYR 281 (735)
T ss_pred cCCCCcEEe
Confidence 999999987
No 109
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.4e-26 Score=248.49 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=237.6
Q ss_pred cCCCeEEEEEecCCCEEEEEE--CCCEEEEEECCC------------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC
Q 002511 56 TELPVRSAKFVARKQWVVAGA--DDMFIRVYNYNT------------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~--~dg~i~vwd~~t------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 121 (914)
+...|.++..+|+|..+++|+ .||.++||+.+. .+.+.....|.+.|+|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345789999999999999999 799999998642 234566778999999999999999999999999
Q ss_pred eEEEEECCC-----------------CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC
Q 002511 122 LIKLWDWEK-----------------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH 184 (914)
Q Consensus 122 ~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 184 (914)
.|.||.... .++....+.+|...|..++|+| ++.+|++++.|++|.+|+..+.+.+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 999998772 1457778899999999999999 8999999999999999999999999999999
Q ss_pred CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcc------cceEEEEEeCCCCEEEEEE----CCCeEE
Q 002511 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------HNVSAVCFHPELPIIITGS----EDGTVR 254 (914)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~~~~----~dg~v~ 254 (914)
.+.|..+.|.|-|+ |+++-++|++|++|++.+....+.+..+. ..+..+.|||||.+|++.. .-.++.
T Consensus 171 ~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999998 99999999999999988877777766543 3478899999999999853 234799
Q ss_pred EEeCCCceeEEEeecCCccEEEEEEecC-----CC------------EEEEEecCCeEEEEcCCC-cceeEEcCCCcEEE
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGYMKS-----SR------------RIVIGYDEGTIMVKIGRE-EPVASMDNSGKIIW 316 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~------------~l~~~~~dg~i~i~~~~~-~~~~~~~~~g~~~~ 316 (914)
|.+..+++.-..+-+|..++.++.|+|. .+ .+|+|+.|+.+.+|.... +|+....
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~------- 321 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH------- 321 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh-------
Confidence 9999999988999999999999999973 11 688999999999996432 2222111
Q ss_pred EeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002511 317 AKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (914)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (914)
.-....|..++|+|||..|.+|+ ||++.++...
T Consensus 322 ---------------------------------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 322 ---------------------------------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ---------------------------------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 01112456899999999888888 9999988554
No 110
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.8e-26 Score=220.04 Aligned_cols=250 Identities=22% Similarity=0.375 Sum_probs=213.4
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCC---EEEEEecCCcEEEEeCCCCcee----EEeeecCCCeEEEEEecCCCEEEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMA----KSFEVTELPVRSAKFVARKQWVVAGA 76 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~~g~v~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (914)
+.+..+++.||+++|.+++|.-..+ .+++++.|.++++|.++.+... +.-.+|..+|.++...++|..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 3456678899999999999865444 5999999999999998877432 33448999999999999999999999
Q ss_pred CCCEEEEEECC-------------------------CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002511 77 DDMFIRVYNYN-------------------------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (914)
Q Consensus 77 ~dg~i~vwd~~-------------------------t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (914)
.|.+|.||+.. ++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 99999999931 1235667889999999999998 568999999999999999998
Q ss_pred ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC---CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcC
Q 002511 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD---PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD 208 (914)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 208 (914)
...... . ....+.++..+| ..++|++|+.|..|++||.+++. ...++.+|..-|.++.|+|.... .|++++.|
T Consensus 292 ~~~~~~-~-~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-~~~S~S~D 367 (423)
T KOG0313|consen 292 GLKSTL-T-TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-QLVSGSYD 367 (423)
T ss_pred cceeee-e-cCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-EEEEEecC
Confidence 444333 3 335689999999 89999999999999999998764 45678899999999999998765 89999999
Q ss_pred CeEEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 209 HTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 209 g~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
+++++||+++.+ ++..+.+|...|.++.|... ..|++||.|.+|+|+...
T Consensus 368 ~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 NTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence 999999999877 89999999999999999864 589999999999998743
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=7e-27 Score=225.25 Aligned_cols=288 Identities=15% Similarity=0.252 Sum_probs=235.4
Q ss_pred eeEEeeecCCCeEEEEEecCC-CEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
.+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+..++.++.+|.+.|..|+++. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 345678899999999999987 7899999999999999999999999999999999999987 5789999999999999
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
++.. +..++.+. +.+..+.-+. .++.|++|+. .|.|||.....|+..+......|.++.|+|.... +|++|++
T Consensus 136 ~~~~--p~~tilg~-s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETs-ILas~~s 208 (433)
T KOG0268|consen 136 IDGP--PLHTILGK-SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETS-ILASCAS 208 (433)
T ss_pred ccCC--cceeeecc-cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcch-heeeecc
Confidence 8874 44444433 3456666655 6788999874 6999999999999999988999999999998765 7888889
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce-eEEEeecCCccEEEEEEecCCCEE
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRI 286 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l 286 (914)
|+.|.+||++++.+++.+. ....-..|+|+|.+-.+.++++|..++.||++... ++.....|.+.|.++.|||.|+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999887765 34456789999988888999999999999998755 677788888999999999999999
Q ss_pred EEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC
Q 002511 287 VIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR 366 (914)
Q Consensus 287 ~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~ 366 (914)
++|+-|.+|+|+.........+..+ + .=..+.++.||.|.+
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYht----------------------------k-----------RMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHT----------------------------K-----------RMQHVFCVKYSMDSK 328 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhH----------------------------h-----------hhheeeEEEEecccc
Confidence 9999999999963332211111100 0 001346889999999
Q ss_pred EEEEEc-CCcEEEEEeeccc
Q 002511 367 FVVVCG-DGEYIIYTALAWR 385 (914)
Q Consensus 367 ~lav~~-~~~~~i~~~~~~~ 385 (914)
++.+|+ ++++.+|....++
T Consensus 329 yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEecCCCcceeeeecchhh
Confidence 999998 7889999776553
No 112
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=227.55 Aligned_cols=285 Identities=17% Similarity=0.255 Sum_probs=232.9
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe--eeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 126 (914)
....+..|.+.|..+.|-++...|++|+.|..|.+|+....+ .+.++.+..+.|+.+.|.+++.++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 344567799999999999999999999999999999987666 567788888899999999999999999999999999
Q ss_pred ECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 127 DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 127 d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
++++. ....++.+|+..|+++.|.. +...+++|+.|.+|+.||+....+..++. ....++.|+.+ .. .+++|.
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~--~~~SgH 319 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--IS--DVISGH 319 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ce--eeeecc
Confidence 99988 77888999999999999987 55559999999999999999877666543 23445555554 22 588999
Q ss_pred cCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC----CccEEEEEEecC
Q 002511 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG----LERVWAIGYMKS 282 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~ 282 (914)
.|++|++||.++..+..+...+. .|+++..+++|..|++++.|.++.+.|+++.....++... ....+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999999988665 8999999999999999999999999999999888777643 234788999999
Q ss_pred CCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEEC
Q 002511 283 SRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHN 362 (914)
Q Consensus 283 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s 362 (914)
+.++++|+.||.|+||......+... . ...++...+.+++|+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~-------------------------------------l-~~s~s~~aI~s~~W~ 440 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKV-------------------------------------L-SLSTSNAAITSLSWN 440 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEE-------------------------------------e-ccCCCCcceEEEEEc
Confidence 99999999999999984333222111 0 012222357788888
Q ss_pred CCCCEEEEEc-CCcEEEE
Q 002511 363 PNGRFVVVCG-DGEYIIY 379 (914)
Q Consensus 363 ~~g~~lav~~-~~~~~i~ 379 (914)
|.|+.|+.++ ++.+.+|
T Consensus 441 ~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 441 PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCchhhcccCCcceEec
Confidence 8888888777 5555555
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.9e-22 Score=216.28 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=232.9
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC-ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
.|+..-+.++|.|+|.+|.+++.||.|++|+..+. +...++..+...|.+++- .+.+|++|+.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 69999999999999999999999999999997665 444445546667777665 555899999999999999998887
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
-..+....-++++++|+.+|++++.|++|-.|++.+.... .....+.+|..+|.++.|+| .+++|++.+.||.|++||
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEE
Confidence 6666666778999999999999999999999999999887 67788899999999999999 899999999999999999
Q ss_pred CCCCCCcEEEecC--------CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC--cccceEEEEEeCCC
Q 002511 172 LGSPDPNFTLDAH--------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG--HTHNVSAVCFHPEL 241 (914)
Q Consensus 172 ~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~ 241 (914)
+.++....++.+- ...+..++|+|++. .++....|+.|++|+..++.....+.. +...++.+.|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g--~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG--TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCC--eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 9988766655321 34567789999976 588888899999999998887776654 34458999999999
Q ss_pred CEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 242 PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.|||+++.||.|.|||..+-.. ......|.+++|.|+++.+-+-...|..-++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999999999999987222 2334689999999999988887777776664
No 114
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=211.52 Aligned_cols=288 Identities=19% Similarity=0.336 Sum_probs=219.3
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC------------C------eeeEEEecCCCCEEEEEEeCCCC
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT------------M------DKVKVFEAHTDYIRCVAVHPTLP 112 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t------------~------~~~~~~~~~~~~i~~~~~s~~~~ 112 (914)
..+..|++++++.+|+|||.++++|+.|..|+|.|++. + -.++++-.|.+.|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45677999999999999999999999999999999861 1 23667778999999999999999
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEEe--ecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE---ecCCCC
Q 002511 113 YVLSSSDDMLIKLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAHQKG 187 (914)
Q Consensus 113 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~ 187 (914)
.|++|+.|++|+++|.... ...+-+ -....+|.++.|+| .+.++++|....++++||+++.++...- ..|.+.
T Consensus 186 ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 9999999999999999764 222111 12346799999999 8999999999999999999887654433 468899
Q ss_pred eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC-cc-cceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEE
Q 002511 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-HT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (914)
|+++.+++.++ +.++++.||.|++||--+++|+.++.. |. ..|.+..|..+|+++++.+.|..+++|.+.+++++.
T Consensus 264 i~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 264 ITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred eeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999999887 899999999999999999999988853 43 459999999999999999999999999999999998
Q ss_pred EeecCC--cc---EEEEEEecCCCEEEEEec-CCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCC
Q 002511 266 TLNYGL--ER---VWAIGYMKSSRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDG 339 (914)
Q Consensus 266 ~~~~~~--~~---v~~i~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 339 (914)
.+.+.. ++ -+...|+....++..-.. .+.+.- |+..++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs------------------------------------WdaRta 385 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS------------------------------------WDARTA 385 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceee------------------------------------ccccch
Confidence 876541 11 112233333333222111 111111 223333
Q ss_pred ceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002511 340 ERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (914)
.++.+- --++...++.+.+||.+.-+.+|+ |-...+|..
T Consensus 386 dr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 386 DRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhc---ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 333211 135566788999999998888887 667888753
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.1e-25 Score=220.12 Aligned_cols=244 Identities=21% Similarity=0.326 Sum_probs=211.4
Q ss_pred eEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeee----EE-------------E-ecCCCCEEEEEEeCCC
Q 002511 50 AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV----KV-------------F-EAHTDYIRCVAVHPTL 111 (914)
Q Consensus 50 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~----~~-------------~-~~~~~~i~~~~~s~~~ 111 (914)
...+..|..+|.+++++|+.++.++++.+|+|.-|++.+++.. .. - +.|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556679999999999999999999999999999999887643 11 0 2677889999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEE
Q 002511 112 PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCV 191 (914)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 191 (914)
++|++|+.|..|.||+.++. ...+.+.+|.+.|.+++|-. +.+.+++++.|++|++|++.....+.++.+|+..|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999998 77788999999999999997 88899999999999999999988889999999999999
Q ss_pred EEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC-
Q 002511 192 DYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG- 270 (914)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~- 270 (914)
....-.. .+.+|+.|+++++|++. ......+.++.+.+-|++|-.+. .+++|+.+|.|.+|++.+.+++.+....
T Consensus 293 daL~reR--~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRER--CVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcccc--eEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeeccc
Confidence 8876555 67777799999999995 34445677888899999998774 7899999999999999988877655421
Q ss_pred -----------CccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 271 -----------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 271 -----------~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
...|++++..|....+++|+.+|.+++|.
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWK 408 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEE
Confidence 12688999999999999999999999984
No 116
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=8.8e-24 Score=232.31 Aligned_cols=224 Identities=16% Similarity=0.223 Sum_probs=181.9
Q ss_pred EECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCCce-------EEEEeecCcccEE
Q 002511 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVM 146 (914)
Q Consensus 75 g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~i~ 146 (914)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++||+.++.. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998887788889999999999999997 78999999999999999986421 2345778999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec
Q 002511 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (914)
+++|+|....++++++.|++|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|+|||+++++.+.++.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEe
Confidence 999999444566899999999999999988777665 567899999999987 78889999999999999999999999
Q ss_pred CcccceEE-----EEEeCCCCEEEEEECCC----eEEEEeCCC-ceeEEEeec--CCccEEEEEEecCCCEEEEEecCCe
Q 002511 227 GHTHNVSA-----VCFHPELPIIITGSEDG----TVRIWHATT-YRLENTLNY--GLERVWAIGYMKSSRRIVIGYDEGT 294 (914)
Q Consensus 227 ~~~~~v~~-----i~~~~~~~~l~~~~~dg----~v~iwd~~~-~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (914)
+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ .+++..+.. +.+.+......++|.++++|+.|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 99876543 23458889999988774 799999985 455554433 2333344444556889999999999
Q ss_pred EEEEcCC
Q 002511 295 IMVKIGR 301 (914)
Q Consensus 295 i~i~~~~ 301 (914)
|++|...
T Consensus 287 Ir~~e~~ 293 (568)
T PTZ00420 287 CRYYQHS 293 (568)
T ss_pred EEEEEcc
Confidence 9998543
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.7e-25 Score=221.84 Aligned_cols=246 Identities=24% Similarity=0.405 Sum_probs=207.5
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCCc----------eeEEeeecCCCeEEEEEecCC-CEEEEEECCCE
Q 002511 13 QRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT----------MAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~~----------~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (914)
.|.+.|..+.+-|+.+ .+|+.+..+.|.|||+.+.. ....+.+|...-..++|++.. -.|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4889999999999776 55566778999999986532 122678898878889999964 46889999999
Q ss_pred EEEEECCCCe-------eeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCC-CceEEEEeecCcccEEEEEEc
Q 002511 81 IRVYNYNTMD-------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEK-GWMCTQIFEGHSHYVMQVTFN 151 (914)
Q Consensus 81 i~vwd~~t~~-------~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~ 151 (914)
|++||++... ....+.+|.+.|..++|++.. ..++++++|+.+.|||.++ ...+.....+|.+.|.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997533 345678999999999999954 5678999999999999995 336677788999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-----------
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------- 219 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------- 219 (914)
|.++.+||+|+.|++|.+||+++. +++.++.+|...|.++.|+|.... .|++++.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et-vLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET-VLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc-eeEecccCCcEEEEeccccccccChhhhcc
Confidence 999999999999999999999885 467889999999999999998765 8999999999999998641
Q ss_pred ---ceEEEecCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCC
Q 002511 220 ---SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (914)
Q Consensus 220 ---~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (914)
+.+....||...|..+.|+|+.+ .|++.++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 23466778999999999999887 45677899999999976
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1e-24 Score=215.22 Aligned_cols=235 Identities=19% Similarity=0.321 Sum_probs=212.2
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEe
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF 138 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 138 (914)
.+.++...|..+.+++|+.|..+.++|..+++.+.++++|...|+.+.++|+...+++++.|..|++|..... ......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-SEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-cCcccc
Confidence 5788888888889999999999999999999999999999999999999999999999999999999998876 566777
Q ss_pred ecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec--CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 139 EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 139 ~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
..|..+|+.+..+| .+.+|++++.||+..+.|++++..+..... ..-.+++.+|+|+|- ++.+|..||.|+|||+
T Consensus 300 ~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEeccCCCceEEEEEc
Confidence 88999999999999 899999999999999999999987766653 334589999999987 7899999999999999
Q ss_pred CCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCC-ccEEEEEEecCCCEEEEEecCCeE
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTI 295 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i 295 (914)
.++..+..|.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++.... ..+.++.|.+.|++|++++.+=.|
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 9999999999999999999999999999999999999999999888777776543 369999999999999999776655
Q ss_pred EE
Q 002511 296 MV 297 (914)
Q Consensus 296 ~i 297 (914)
++
T Consensus 457 y~ 458 (506)
T KOG0289|consen 457 YI 458 (506)
T ss_pred EE
Confidence 55
No 119
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=7.8e-25 Score=220.37 Aligned_cols=238 Identities=16% Similarity=0.285 Sum_probs=188.5
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee----eEEE-ecCCCCEEEEEEeCCCCEEEEEEcCCeEEE
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~----~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 125 (914)
..+.+|...|.++++.|.|..|++|+.|-.|++||+..... .+.+ ......|+++.|++.|..|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 45677888999999999999999999999999999975432 1222 234557999999999999999999999999
Q ss_pred EECCCCceEEEE------------eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE------ecCCCC
Q 002511 126 WDWEKGWMCTQI------------FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL------DAHQKG 187 (914)
Q Consensus 126 wd~~~~~~~~~~------------~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~~~~ 187 (914)
+|-+.. .+... ..+|...++|.+|+|...+.|++++.||++++||+...+..... .+..-+
T Consensus 241 ~DRdG~-~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGF-EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EccCCc-eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 997654 33332 35788899999999988999999999999999999776543322 233456
Q ss_pred eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc---eEEEecCccc--ceEEEEEeCCCCEEEEEECCCeEEEEeCCCce
Q 002511 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS---CVQTLEGHTH--NVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (914)
++.++|++++. +|++|+.||.|.+|+..+.. ....-..|.. .|+||.||++|++|++-+.|+++++||+++.+
T Consensus 320 ~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 320 VTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred ceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 88999999988 69999999999999986432 1233345665 89999999999999999999999999999765
Q ss_pred -eEEEeec--CCccEEEEEEecCCCEEEEEec
Q 002511 263 -LENTLNY--GLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 263 -~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
++.+... ..-+-+.++|||+.+.|++|+.
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 3333222 1234578999999999999874
No 120
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.1e-24 Score=202.49 Aligned_cols=270 Identities=19% Similarity=0.206 Sum_probs=211.2
Q ss_pred ecCCCeEEEEEec-CCCEEEEEECCCEEEEEECCC-Ceee-EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002511 55 VTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNT-MDKV-KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (914)
Q Consensus 55 ~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~t-~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (914)
..+..|.+++||| ...++++||.||+||+|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 555666889999999999986 3333 334578999999999999999999999999999999998
Q ss_pred ceEEEEeecCcccEEEEEEccCCCC--EEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC
Q 002511 132 WMCTQIFEGHSHYVMQVTFNPKDTN--TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (914)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (914)
....+..|..+|.++.|-+ ..+ .|++|+.|.+|++||+++..++.++.. ...+.++.. ..++++++..++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv----~~pm~vVata~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV----LYPMAVVATAER 176 (347)
T ss_pred --CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc----cCceeEEEecCC
Confidence 3455667999999999987 454 899999999999999999999888763 455566554 344899999999
Q ss_pred eEEEEECCCCceEEE-e-cCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc--eeEEEeecCC---------ccEEE
Q 002511 210 TAKVWDYQTKSCVQT-L-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY--RLENTLNYGL---------ERVWA 276 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~-~-~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~---------~~v~~ 276 (914)
.|.+|+++++..... + ......+.|++..++....+.|+-+|.+.|..+..+ +.-.+++.|. ..|.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 999999986543221 1 112345889999999888899999999999988775 3223333332 35788
Q ss_pred EEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002511 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (914)
Q Consensus 277 i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (914)
|+|+|.-..|++.+.||++.+|..... ..++....+...|
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar----------------------------------------~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDAR----------------------------------------TKLKTSETHPQPI 296 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhh----------------------------------------hhhhccCcCCCcc
Confidence 999999999999999999999843322 1122235666788
Q ss_pred ceEEECCCCCEEEEEc
Q 002511 357 QSLKHNPNGRFVVVCG 372 (914)
Q Consensus 357 ~~l~~s~~g~~lav~~ 372 (914)
++..|+.+|.++|.+.
T Consensus 297 tcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEecCCCCEEEEEe
Confidence 8999999999887653
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-24 Score=214.05 Aligned_cols=279 Identities=17% Similarity=0.306 Sum_probs=229.9
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC--CceeEEeeecCCCeEEEEEecCCC-EEEEEECCCEEEEEECCCCee
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~vwd~~t~~~ 91 (914)
.++|++|.|||..+.|++++.||.++||.+.. ...++++.....||.+..|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999998754 345666766788999999999999 899999999999999998765
Q ss_pred eEE--EecCC-CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 92 VKV--FEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 92 ~~~--~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
.+. ..++. ..+.....+|++++|++.+..|.|.+....++ .....+. ..+.|..++|+. ++..|++++.+|.|.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-ELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVY 369 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-hhhheee-eccEEeeEEEec-CCcEEEEEcCCceEE
Confidence 443 23333 35788899999999999999999999998887 4444443 456799999997 889999999999999
Q ss_pred EEECCCCCCcEEEecCCCCee--EEEEeeCCCcCEEEEEEcCCeEEEEECCC------CceEEEecCcccceEEEEEeCC
Q 002511 169 IWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDDHTAKVWDYQT------KSCVQTLEGHTHNVSAVCFHPE 240 (914)
Q Consensus 169 vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~ 240 (914)
+||++...++.++.. .+.|. +++.++++. |+++|+..|.|-|||..+ .+++..+..-...|+++.|+|+
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~--ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS--YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc--eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 999999988877753 34444 455556665 999999999999999653 4677777777888999999999
Q ss_pred CCEEEEEE--CCCeEEEEeCCCceeEEEeec---CCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 241 LPIIITGS--EDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 241 ~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
.++|+.+| ....+++-++.+......+.. ..+.|+|++|||.|.++|+|...|.+.+|.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 99988877 456899998877665554443 346799999999999999999999999973
No 122
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.7e-23 Score=187.25 Aligned_cols=245 Identities=19% Similarity=0.304 Sum_probs=207.2
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-----eeEEeeecCCCeEEEEEecC----CCEEEEEEC-CC
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTELPVRSAKFVAR----KQWVVAGAD-DM 79 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~----~~~l~~g~~-dg 79 (914)
+-+.|.+.|.|.+|||+|.+||+|+.|.+|++.-++... .-..|..|++.|+.++|-.+ |..|++++. |.
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 345799999999999999999999999999997654332 22457789999999999754 456777654 78
Q ss_pred EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-------CcccEEEEEEcc
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-------HSHYVMQVTFNP 152 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~p 152 (914)
.|++-|..+|+..+.+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-. .+..++.. ..+.|.+++..|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECC
Confidence 89999999999999999999999876 3335778999999999999999976 45554431 135789999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC----ceEEEecCc
Q 002511 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----SCVQTLEGH 228 (914)
Q Consensus 153 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 228 (914)
.+.+|++|..|....+||++.+++++.+..|...|.|+.|+|... |+++++.|..|++-|++.. -++.....|
T Consensus 242 -sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~--yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 242 -SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH--YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred -CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce--EEEEecccceEEEeecccchhhcCceEEEEec
Confidence 899999999999999999999999999999999999999999887 9999999999999998742 234455668
Q ss_pred ccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 229 THNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8889999999998889999999999999754
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-24 Score=217.95 Aligned_cols=284 Identities=16% Similarity=0.248 Sum_probs=236.5
Q ss_pred chhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC---ceeEEeee--cCCCeEEEEEecCCCEEEEEECCC
Q 002511 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEV--TELPVRSAKFVARKQWVVAGADDM 79 (914)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg 79 (914)
.+..++| .|..-|.++.+|...+.+.+|+ .|.|+|||+... ..+..+.. ....|+++..+|||+.|++|+.-.
T Consensus 410 arq~~tL-~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 410 ARQINTL-AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred HHhhhhh-ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc
Confidence 3334444 5999999999999999999987 578999998643 22333332 356799999999999999999999
Q ss_pred EEEEEECCCCeeeE--EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCE
Q 002511 80 FIRVYNYNTMDKVK--VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (914)
Q Consensus 80 ~i~vwd~~t~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (914)
++.|||+.+..... .+....-....++.+||.+..++|+.||.|.|||+.+. ...+.+.+|...+.||..++ ++..
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~-dGtk 565 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISK-DGTK 565 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecC-CCce
Confidence 99999997644322 23332345677999999999999999999999999987 88899999999999999999 8999
Q ss_pred EEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEE
Q 002511 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (914)
Q Consensus 158 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 237 (914)
|.+|+.|.+|+.||++.+..+.... ....|.++.++|.++ ++++|-.++.+.+.... +.....+..|.+.|.++.|
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d--WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD--WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF 641 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc--ceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence 9999999999999999987665543 457889999999988 89999999999998865 4445556678999999999
Q ss_pred eCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 238 HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
.+.|+++++.+.|.-+..|...-|..+...... .+|.++..|.|.++|++|+.|..-.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasiFqskE~-SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-SSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cccCceeeecCchhhhhhccCccccceeecccc-CcceeeeeccCceEEEecCCCcceEE
Confidence 999999999999999999998878777665543 78999999999999999999876655
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.7e-25 Score=199.50 Aligned_cols=252 Identities=19% Similarity=0.253 Sum_probs=210.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC---ceeEEeeecCCCeEEEEEec--CCCEEEEEECCCEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ---TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIR 82 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~ 82 (914)
++.-.+|.+.|..+...--|++|||+++|++|+|+.+++. .++.++.+|.+||..++|.. -|..||+++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 4456789999999999999999999999999999998764 46778999999999999976 799999999999999
Q ss_pred EEECCCCeee--EEEecCCCCEEEEEEeCC--CCEEEEEEcCCeEEEEECCC--CceEEEEeecCcccEEEEEEccCC--
Q 002511 83 VYNYNTMDKV--KVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEK--GWMCTQIFEGHSHYVMQVTFNPKD-- 154 (914)
Q Consensus 83 vwd~~t~~~~--~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~p~~-- 154 (914)
||...+++.. .....|...|++++|.|. |-.|++++.||.|.+.+.++ ++...++...|.-.|++++|.|..
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 9999887543 345689999999999986 56789999999999998874 455667778899999999999831
Q ss_pred C-----------CEEEEEeCCCcEEEEECCCCC--CcEEEecCCCCeeEEEEeeCCC--cCEEEEEEcCCeEEEEECCCC
Q 002511 155 T-----------NTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGD--KPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 155 ~-----------~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 219 (914)
+ ..|++|+.|..|+||+..+++ .-.++.+|..-|..++|.|.-. ..+|++++.||++.||..+..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE 243 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence 2 469999999999999998763 2345789999999999999752 347999999999999987632
Q ss_pred c---eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 220 S---CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 220 ~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
. ....++.....+..+.||+.|++|++++.|+.|.+|.-+
T Consensus 244 ~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 122334456789999999999999999999999999744
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=199.32 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=200.4
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--eEEEEeecCcccEEEEEE-ccCCCCEEEEEeCCCcEEEEE
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVTF-NPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~-~p~~~~~l~~~~~dg~i~vwd 171 (914)
...|.+.|..+...--|++|++++.|++|+|+..+++. .+...+.+|.++|..++| +|+-+++|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 34788889888888889999999999999999998764 567788999999999999 677899999999999999999
Q ss_pred CCCCCC--cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC---ceEEEecCcccceEEEEEeCC---C--
Q 002511 172 LGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK---SCVQTLEGHTHNVSAVCFHPE---L-- 241 (914)
Q Consensus 172 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~---~-- 241 (914)
-.+++- ......|...|++++|.|..-+..|++++.||.|.+.++++. ........|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 877743 344567999999999999998889999999999999998754 223445678889999999996 4
Q ss_pred ---------CEEEEEECCCeEEEEeCCCce--eEEEeecCCccEEEEEEecCC----CEEEEEecCCeEEEEcCCCccee
Q 002511 242 ---------PIIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMVKIGREEPVA 306 (914)
Q Consensus 242 ---------~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~i~i~~~~~~~~~ 306 (914)
+.|++|+.|..|+||+..+++ +..++..|.+-|+.++|.|.- .+||+++.||++.||......
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-- 244 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-- 244 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc--
Confidence 469999999999999987754 566789999999999999974 579999999999997433110
Q ss_pred EEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEE
Q 002511 307 SMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYT 380 (914)
Q Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~ 380 (914)
-+...+-+......+-.++||+.|.+|++++ |+++.+|.
T Consensus 245 -----------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 245 -----------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred -----------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 0000011122223456889999999999887 78888874
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=198.61 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=213.4
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCcee--EEe--eecCCCeEEEEEecCCCEEEEEEC-CCEEEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA--KSF--EVTELPVRSAKFVARKQWVVAGAD-DMFIRV 83 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~--~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~v 83 (914)
..|++|++.|++++|+.||++||+++.|+.|+||+++..... +.+ ...-+..+.+.|+||-+-+++... ...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 468899999999999999999999999999999998764211 111 112235688999999876665554 458999
Q ss_pred EECCC---Ceee---------EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEc
Q 002511 84 YNYNT---MDKV---------KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (914)
Q Consensus 84 wd~~t---~~~~---------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (914)
|.+.. |... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++ + +..+........-...+.+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G-q~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G-QLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C-ceeeeeccccccccceeeC
Confidence 97642 1111 1123466677778888888999999999999999999 4 4555555555566778899
Q ss_pred cCCCCEEEEEeCCCcEEEEECC---CC-----CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC----C
Q 002511 152 PKDTNTFASASLDRTIKIWNLG---SP-----DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----K 219 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~ 219 (914)
| +++++++++..-.|++|.+- .| ...+.+.+|...|...+|+++.. .+++.+.||++++||+.- +
T Consensus 238 P-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 238 P-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--RAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred C-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--eeEEEecCCcEEEeeccceEecC
Confidence 9 99999999999999999862 22 34678899999999999999888 599999999999999752 2
Q ss_pred c---eEEEe----cCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEee-cCCccEEEEEEecCCCEEEEEec
Q 002511 220 S---CVQTL----EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN-YGLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 220 ~---~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
+ .+++. ....+.-..++++|+|+.|+... ...++++..++|+...++. .|...|.+++|+++|++++++++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 2 22222 11223345899999999888765 5589999999988766554 56789999999999999999876
Q ss_pred CCeE
Q 002511 292 EGTI 295 (914)
Q Consensus 292 dg~i 295 (914)
.-..
T Consensus 394 r~vr 397 (420)
T KOG2096|consen 394 RYVR 397 (420)
T ss_pred eeee
Confidence 4433
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=202.46 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=215.7
Q ss_pred ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
++++.+.+|...|..++-....+.+.+++.|.+-+||.+++|.++..+.+|.+.|+++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45677889999999999888888889999999999999999999999999999999999999999999999999999996
Q ss_pred C------CCC---------------------------------ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 128 W------EKG---------------------------------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 128 ~------~~~---------------------------------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
. ... ..+...+.+|.+.|.++.|.. ++..+++++.|.+-.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 1 110 234455778999999999998 899999999999999
Q ss_pred EEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-ceEEEecCcccceEEEEEeCCCCEEEEE
Q 002511 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITG 247 (914)
Q Consensus 169 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 247 (914)
+||+.++.++..+.+|....+.++-+|... ++++.+.|.+.++||++.. ..+..|++|...|+++.|..+. .+++|
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcce--EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999999999999999888877655 8999999999999999843 4577899999999999999875 58899
Q ss_pred ECCCeEEEEeCCCce-eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 248 SEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 248 ~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
+.|.+|++||+++.+ ++.++... .++..++.+..++.|++-.++..++++
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred CCCceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEE
Confidence 999999999999876 55566544 778889999988899998888888884
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-23 Score=196.48 Aligned_cols=265 Identities=17% Similarity=0.275 Sum_probs=218.8
Q ss_pred EEEEEecCCcEEEEeCCCC------------ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe
Q 002511 29 WILASLYSGTVCIWNYQSQ------------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (914)
Q Consensus 29 ~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~ 96 (914)
.|++|++...|.=+++... ..+..+..|.+++++++. ++.++|+|+.|-+|+|||+.+...+..+-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 3677777776666654321 124456779999999998 58899999999999999999999999999
Q ss_pred cCCCCEEEEEEeCCCC--EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 97 AHTDYIRCVAVHPTLP--YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
.|.+.|+++.|.+.-. .|++|+.||.|.+|+... |.+...+.+|.+.|+.++.+| .+.+.++.+.|+.++.|++-.
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhc
Confidence 9999999999998765 899999999999999876 599999999999999999999 899999999999999999998
Q ss_pred CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEE
Q 002511 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (914)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 254 (914)
++.-+.+.-.. .-..+.|+|.|+ +++.+..+ .|-+|.+.+......+. ....+.++.|.. +..+++|+.|+.|.
T Consensus 159 Gr~a~v~~L~~-~at~v~w~~~Gd--~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 159 GRVAFVLNLKN-KATLVSWSPQGD--HFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGGDNEWIS 232 (362)
T ss_pred CccceeeccCC-cceeeEEcCCCC--EEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEecCCceEE
Confidence 88766655332 235599999888 57777655 58899988766655554 224566666664 46899999999999
Q ss_pred EEeCCCceeEEEeecCCccEEEEEE--ecCCCEEEEEecCCeEEEEcCCCc
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGY--MKSSRRIVIGYDEGTIMVKIGREE 303 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~dg~i~i~~~~~~ 303 (914)
+||.....+...+..|..+|.++.+ .|++.+|+++++||.|.+|.-...
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999999999999999984 456889999999999999965443
No 129
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=5.2e-24 Score=218.29 Aligned_cols=290 Identities=21% Similarity=0.315 Sum_probs=231.0
Q ss_pred CcchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCE--EEEEECCC-
Q 002511 3 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW--VVAGADDM- 79 (914)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~g~~dg- 79 (914)
+.-.+...+.||++.|.+|..+|.|.||++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+.. ||++-...
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 3344556688999999999999999999999999999999999999999887 5568999999997653 44433222
Q ss_pred -------------------------------EEEEEECCCC----eeeEEEecCCCCEEEEEEeCCCCEEEEEEcC---C
Q 002511 80 -------------------------------FIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD---M 121 (914)
Q Consensus 80 -------------------------------~i~vwd~~t~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g 121 (914)
.+..|.-... .-++..-.|...|+.+.||..|.||++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 2223322210 1123344588899999999999999987654 5
Q ss_pred eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCE
Q 002511 122 LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (914)
Q Consensus 122 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (914)
.|.|+++... ..+..|....+.|.++.|+| ...+|++++. ..|++||+.....+..+.....-|..++++|.|++
T Consensus 547 ~VliHQLSK~-~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn-- 621 (733)
T KOG0650|consen 547 SVLIHQLSKR-KSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN-- 621 (733)
T ss_pred eEEEEecccc-cccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe--
Confidence 7899999876 44455666677899999999 5666666664 78999999888777777777888999999999984
Q ss_pred EEEEEcCCeEEEEECCCC-ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce---------eEEEeecCC
Q 002511 202 LITGSDDHTAKVWDYQTK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR---------LENTLNYGL 271 (914)
Q Consensus 202 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~ 271 (914)
|+.|+.|+.+..||+.-. ++.+++..|...+++++||+.-+++++|+.||++.++.-.-+. ++..+.+|.
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 999999999999999754 5778888899999999999999999999999999999743211 345566664
Q ss_pred cc----EEEEEEecCCCEEEEEecCCeEEEE
Q 002511 272 ER----VWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 272 ~~----v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.. |..+.|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 43 8888999999999999999999986
No 130
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=197.02 Aligned_cols=288 Identities=17% Similarity=0.246 Sum_probs=213.1
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce-----EEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 94 VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
.+++|.+.|++++|+.||++|++++.|+.|++|+++.-.. +...+. -+..+.+.|.|+-...++++-...+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEEE
Confidence 4579999999999999999999999999999999885311 111111 123578899995555666666777899
Q ss_pred EEECCCCC---CcEE--------E-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEE
Q 002511 169 IWNLGSPD---PNFT--------L-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (914)
Q Consensus 169 vwd~~~~~---~~~~--------~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 236 (914)
+|.+...+ .... + +.|...+..+-. .++..+|++++.|..|.+|+++ |+.+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99874321 1111 1 123333444443 4445599999999999999999 999999988877888899
Q ss_pred EeCCCCEEEEEECCCeEEEEeCC---Cce-----eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEE
Q 002511 237 FHPELPIIITGSEDGTVRIWHAT---TYR-----LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASM 308 (914)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~---~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 308 (914)
.||+|+++++++-...|++|.+- .|. ....+.+|...|..++|+++..++++.+.||.+++|...-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr----- 310 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR----- 310 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce-----
Confidence 99999999999999999999853 222 45678899999999999999999999999999999843221
Q ss_pred cCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccc---
Q 002511 309 DNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWR--- 385 (914)
Q Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~--- 385 (914)
|....+..+ +..|. ..+......+-.++.+|+|+.||+.....+.+|.....+
T Consensus 311 -------Y~~~qDpk~-----------Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 311 -------YEAGQDPKI-----------LKEGS------APLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred -------EecCCCchH-----------hhcCC------cchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 111111111 11111 112223335568999999999999999999999765543
Q ss_pred ---ccccCceeEEEEecCCcEEEEecCCeEEEe
Q 002511 386 ---NRSFGSALEFVWSSDGEYAVRESSSKIKIF 415 (914)
Q Consensus 386 ---~~~~~~~~~~~~s~~~~~l~~~~~~~i~v~ 415 (914)
..+.+.|.+++|+++|+|+++..+..++++
T Consensus 367 ~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 367 ELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred hHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 345678999999999999999999999987
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3e-23 Score=216.76 Aligned_cols=282 Identities=21% Similarity=0.295 Sum_probs=233.2
Q ss_pred ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE--EEecCCCCEEE-EEEeC-CCCEEEEEEcCCeE
Q 002511 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK--VFEAHTDYIRC-VAVHP-TLPYVLSSSDDMLI 123 (914)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~--~~~~~~~~i~~-~~~s~-~~~~l~~~~~dg~i 123 (914)
++.+.+.+|+..|+.++..+.. +++++|.||++++|+-..++.+. .+.+|.+.|.+ +++-+ ++-++++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 4567889999999998876554 89999999999999976655543 46678887777 77775 44569999999999
Q ss_pred EEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEE
Q 002511 124 KLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (914)
Q Consensus 124 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (914)
.+|...+. .+..++.+|...|++++... ++ .+++||.|.++++|-. ++....+.+|...|+.+...|.. .++
T Consensus 84 ~v~~~~~~-~P~~~LkgH~snVC~ls~~~-~~-~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~---~~v 155 (745)
T KOG0301|consen 84 IVFKLSQA-EPLYTLKGHKSNVCSLSIGE-DG-TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN---TYV 155 (745)
T ss_pred EEEecCCC-CchhhhhccccceeeeecCC-cC-ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC---cEE
Confidence 99999887 88899999999999998765 44 4999999999999975 45566689999999999998877 499
Q ss_pred EEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCC
Q 002511 204 TGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
+|+.|.+|++|.- ++.++++.+|...|..+++-+++ .+++++.||.|++|++ +|..+....+|..-+++++..+++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 9999999999984 78899999999999999999985 4889999999999998 789999999999999999988999
Q ss_pred CEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002511 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (914)
Q Consensus 284 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (914)
+.+++++.|++++||....- .+.+ ......+-++.+-+
T Consensus 232 ~~Ivs~gEDrtlriW~~~e~------------------~q~I------------------------~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKDEC------------------VQVI------------------------TLPTTSIWSAKVLL 269 (745)
T ss_pred CeEEEecCCceEEEeecCce------------------EEEE------------------------ecCccceEEEEEee
Confidence 99999999999999843310 0111 11111334566778
Q ss_pred CCCEEEEEcCCcEEEEEeecc
Q 002511 364 NGRFVVVCGDGEYIIYTALAW 384 (914)
Q Consensus 364 ~g~~lav~~~~~~~i~~~~~~ 384 (914)
+|..++.|+||.++||+....
T Consensus 270 NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 270 NGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCCEEEeccCceEEEEEeccc
Confidence 889888889999999977643
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.4e-24 Score=213.37 Aligned_cols=252 Identities=17% Similarity=0.266 Sum_probs=214.8
Q ss_pred EEEEEec-CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEE
Q 002511 29 WILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV 107 (914)
Q Consensus 29 ~la~~~~-~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~ 107 (914)
+++++.. ...+.+|.+...........-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555433 456889998776555544456789999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCC--------CceEEEEeecCcccEEEEEEccC-CCCEEEEEeCCCcEEEEECCCCCCc
Q 002511 108 HPTLPYVLSSSDDMLIKLWDWEK--------GWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPN 178 (914)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~vwd~~~~~~~ 178 (914)
+-||.+|++|+.||.|.+|++.. ...+...+..|.-+|+.+...+. -...++++|.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 99999999999999999997632 23567788899999999998772 3468999999999999999999877
Q ss_pred EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC----------------ceEEEecCccc--ceEEEEEeCC
Q 002511 179 FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK----------------SCVQTLEGHTH--NVSAVCFHPE 240 (914)
Q Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~i~~~~~ 240 (914)
.++. ....+.+++..|... .+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++++-|
T Consensus 212 lti~-fp~si~av~lDpae~--~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D 288 (476)
T KOG0646|consen 212 LTIT-FPSSIKAVALDPAER--VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD 288 (476)
T ss_pred EEEe-cCCcceeEEEccccc--EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC
Confidence 7765 567889999999887 7999999999999876432 24556778887 8999999999
Q ss_pred CCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCC
Q 002511 241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 241 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
|.+|++|+.||.|++||+.+.++++++....++|+.+.+.|-.
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999999999999999988777899999886653
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=209.94 Aligned_cols=244 Identities=22% Similarity=0.347 Sum_probs=204.7
Q ss_pred ecCCCeEEEEEecCCCE-EEEEECCCEEEEEECCCCe----------eeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCe
Q 002511 55 VTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMD----------KVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDML 122 (914)
Q Consensus 55 ~~~~~v~~~~~s~~~~~-l~~g~~dg~i~vwd~~t~~----------~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~ 122 (914)
.|.+.|+.+...|+... +++++..+.|.|||+.+-. +-..+.+|.+.-.+++|++.. .+|++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 38889999999997654 5566788999999986421 122677888877889999864 47899999999
Q ss_pred EEEEECCCCc------eEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC--CCCCcEEEecCCCCeeEEEEe
Q 002511 123 IKLWDWEKGW------MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYF 194 (914)
Q Consensus 123 i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~ 194 (914)
|++||+.... .....+.+|...|..++|+|...++|++++.|+.+.|||++ +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999998542 34567889999999999999999999999999999999999 566677788999999999999
Q ss_pred eCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCc-----------
Q 002511 195 TGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTY----------- 261 (914)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~----------- 261 (914)
|.+.. +|++|+.|++|++||+|+ .+++.++.+|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 282 p~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 282 PFNEF-ILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCc-eEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 98754 899999999999999997 45789999999999999999965 58888999999999998632
Q ss_pred ---eeEEEeecCCccEEEEEEecCCCE-EEEEecCCeEEEEc
Q 002511 262 ---RLENTLNYGLERVWAIGYMKSSRR-IVIGYDEGTIMVKI 299 (914)
Q Consensus 262 ---~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~dg~i~i~~ 299 (914)
+++....+|...|..+.|+|...+ |++.++|+.+.||.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 234566678889999999998765 56688999999984
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=5.5e-23 Score=192.88 Aligned_cols=283 Identities=18% Similarity=0.288 Sum_probs=226.7
Q ss_pred ccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCCCc----------eeE-----EeeecCCCeEEEEEec-CCCEEEE
Q 002511 12 AQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQT----------MAK-----SFEVTELPVRSAKFVA-RKQWVVA 74 (914)
Q Consensus 12 ~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~s~-~~~~l~~ 74 (914)
..|.+.|.++.+.+ .|+++++|+.||.|.+||+++-. .+. .-.+|.-.|..+.|-| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999999 57899999999999999997642 111 1134777899999999 5557778
Q ss_pred EECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCC---CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEc
Q 002511 75 GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT---LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFN 151 (914)
Q Consensus 75 g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 151 (914)
++-|.+++|||.+|.+..-.|+ ..+.|.+-+|||- .-++++|..+-.|++.|+.++ ...+++.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeeccccCceEEEEec
Confidence 8889999999999988887776 4667888899884 347888999999999999999 8999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC-CCc--------------EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSP-DPN--------------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~-~~~--------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
|...-.|++|+.||.|++||++.. .+. ..-..|.+.|+.++|+.++. ++++++.|..+++|+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~--~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR--YLASCGTDDRIRVWNM 275 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch--hhhhccCccceEEeec
Confidence 988888999999999999999753 111 12246778899999999888 7999999999999999
Q ss_pred CCCceEEE-ec--Ccccc----eEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEE
Q 002511 217 QTKSCVQT-LE--GHTHN----VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 217 ~~~~~~~~-~~--~~~~~----v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (914)
.+|+.... +- .|... +. +. +.+...++.--.++.+.++++-.|..+..+..|...+.+..+.|+-+...+|
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 87753211 10 01111 11 22 3333344444566899999999999999999998899999999999999999
Q ss_pred ecCCeEEEEcC
Q 002511 290 YDEGTIMVKIG 300 (914)
Q Consensus 290 ~~dg~i~i~~~ 300 (914)
..|+.+..|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999854
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.3e-22 Score=192.74 Aligned_cols=269 Identities=17% Similarity=0.201 Sum_probs=211.1
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (914)
....|..+.|+|.++.|++++.||.+++|+..+......+. |..++.+++|.++ ..+++|+.||.|+.+|+.++ ..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC--cc
Confidence 46789999999999999999999999999998775544454 8899999999975 47999999999999999987 34
Q ss_pred EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
..+..|...|.|+.+++ ..+.+++|+.|++|++||.+.......+.. ...|.++... ++ .|++|+.+..+.+||
T Consensus 88 ~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~--~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN--RLVVGTSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC--EEEEeecCceEEEEE
Confidence 55667999999999998 788999999999999999998666655553 3478888763 34 699999999999999
Q ss_pred CCCCceEEEec--CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc----eeEEEeecCC---------ccEEEEEEe
Q 002511 216 YQTKSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY----RLENTLNYGL---------ERVWAIGYM 280 (914)
Q Consensus 216 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~---------~~v~~i~~~ 280 (914)
+++........ ...-.+.++++.|++.-.++++-||.|.+=.+... +....++.|. -+|.+++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 99865543222 23456889999998888999999999887655443 2222333331 368999999
Q ss_pred cCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEE
Q 002511 281 KSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLK 360 (914)
Q Consensus 281 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 360 (914)
|-.+.+++|+.||.|.+|.....+- ++++..-+..|.+++
T Consensus 242 p~~~tfaTgGsDG~V~~Wd~~~rKr----------------------------------------l~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 242 PIHGTFATGGSDGIVNIWDLFNRKR----------------------------------------LKQLAKYETSISSLS 281 (323)
T ss_pred cccceEEecCCCceEEEccCcchhh----------------------------------------hhhccCCCCceEEEE
Confidence 9999999999999999985443321 112233344677899
Q ss_pred ECCCCCEEEEEcCC
Q 002511 361 HNPNGRFVVVCGDG 374 (914)
Q Consensus 361 ~s~~g~~lav~~~~ 374 (914)
|+.+|..||++++-
T Consensus 282 fs~dG~~LAia~sy 295 (323)
T KOG1036|consen 282 FSMDGSLLAIASSY 295 (323)
T ss_pred eccCCCeEEEEech
Confidence 99999999998743
No 136
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.5e-23 Score=207.16 Aligned_cols=289 Identities=19% Similarity=0.265 Sum_probs=228.1
Q ss_pred hhcccCCCCEEEEEEcCCCC--EEEEEecCCcEEEEeCCCC----ceeEEeeecCCCeEEEEEecC-CCEEEEEECCCEE
Q 002511 9 RKLAQRSERVKSVDLHPSEP--WILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFI 81 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~--~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i 81 (914)
...+-+.++|++++|||..+ .+|+|...|.|-+||+.++ ..+..+..|..+|.++.|+|. -..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34556889999999999765 7888989999999999533 345667889999999999995 4678999999999
Q ss_pred EEEECCCCeeeEEEe--cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
+.-|++++..-..+. .....+..+.|+.+...++.+..=|.+.+||.+++......+.-|...|.+++++|....+|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998764433332 244567888999988889988888899999999886667777788889999999998899999
Q ss_pred EEeCCCcEEEEECCCCC----CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC----CCceEEEecCccc-
Q 002511 160 SASLDRTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ----TKSCVQTLEGHTH- 230 (914)
Q Consensus 160 ~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~- 230 (914)
+++.|++.+|||++.-. +......|...|++..|+|.+. .|++.+.|..|+|||.. ...+..++. |..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--ceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 99999999999997633 2344567999999999999987 49999999999999973 223333332 222
Q ss_pred ---c--eEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCc-cEEE-EEEecCCC-EEEEEecCCeEEEEcC
Q 002511 231 ---N--VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLE-RVWA-IGYMKSSR-RIVIGYDEGTIMVKIG 300 (914)
Q Consensus 231 ---~--v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~-i~~~~~~~-~l~~~~~dg~i~i~~~ 300 (914)
. .....|.|+..+|++|..-..|-|+|...++.+..+..+.. .|.+ ..|+|-+. .++-++..|.|++|..
T Consensus 417 t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 1 33568999999999999999999999998887777655433 4444 57999888 4445566777777643
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.9e-22 Score=191.17 Aligned_cols=280 Identities=10% Similarity=0.169 Sum_probs=218.1
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEec
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~ 97 (914)
-.|+.|++.|.+||+|+.||.|.|||+.|...-+.+..|..+|++++||++|+.|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999889999999999999999999999999999999999999999998887
Q ss_pred CCCCEEEEEEeCCCCEEEEE-EcCCeEEEEECCCCceEEEEeecC-----cccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 98 HTDYIRCVAVHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 98 ~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
...+|....|+|.....+.+ --+..-.+-++..+ ....+... ...-.+..|.+ .++++++|...|.+.++|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYD 181 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEe
Confidence 46789999999965433332 22333344444432 11111111 11122335777 899999999999999999
Q ss_pred CCCCCCcEEEecCC-CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-------ce--EEEecC--cccceEEEEEeC
Q 002511 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-------SC--VQTLEG--HTHNVSAVCFHP 239 (914)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~--~~~~v~~i~~~~ 239 (914)
..+.+++..++-.. ..|..+.++..|+ .+++.+.|+.|+.|+++.- .+ .+.+.. ....-.+++|+.
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~--~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGR--FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCc--EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988887776555 7788899988887 7999999999999997631 11 111111 122345789999
Q ss_pred CCCEEEEEEC-CCeEEEEeCCCceeEEEeecCC-ccEEEEEEecCCCEEEEEecCCeEEEEcCCCcc
Q 002511 240 ELPIIITGSE-DGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEP 304 (914)
Q Consensus 240 ~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~ 304 (914)
+|.+++.|+. -..++||....|.+++.+.+.. .....+.|.|-...+++- ..|.+++|.....+
T Consensus 260 dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 260 DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 9999988763 4579999999999999998887 567889999988777766 88999998655444
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=202.64 Aligned_cols=260 Identities=17% Similarity=0.281 Sum_probs=216.3
Q ss_pred CCcEEEEeCCCCceeEEeeec-CCCeEEEEEecCCCEEEEEEC-CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 36 SGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 36 ~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..++.+||+++|....++++. ...-.++..- .+.+++++.. ...|.+|.+..........--.++|.+++-+|+|.+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~ 95 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYF 95 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceE
Confidence 456999999999998888865 2222222221 2355666544 568999998765544433345678999999999999
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC---------CCCCcEEEecC
Q 002511 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------SPDPNFTLDAH 184 (914)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~ 184 (914)
|+.|+..|.|++|.+.+| .+..++..|-..|+++.|+- |+.+|++|+.||.|.+|++- +.++...+..|
T Consensus 96 l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 96 LLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEeecccCcEEEEEeccc-cHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 999989999999999999 77778899999999999998 89999999999999999862 34678889999
Q ss_pred CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce--
Q 002511 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-- 262 (914)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 262 (914)
.-+|+.+.+.+.+....+++++.|.++++||+..+..+.++. ....+.+++.+|.+..+.+|+.+|.|.+.++.+..
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 999999999998877899999999999999999999988887 66789999999999999999999999998765322
Q ss_pred --------------eEEEeecCCc--cEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 263 --------------LENTLNYGLE--RVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 263 --------------~~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
....+.+|.+ .|+|++.+-||..|++|+.||.+.+|.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 3455667766 899999999999999999999999984
No 139
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.2e-24 Score=227.90 Aligned_cols=260 Identities=20% Similarity=0.406 Sum_probs=233.4
Q ss_pred CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEE
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCV 105 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~ 105 (914)
-+.+++.+...-.+++|+.+. +..|...|.|+..-..++.+++|+.+..+-+|.+.....+..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 334445555566677888533 44588888888887888999999999999999998777778899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCC
Q 002511 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (914)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 185 (914)
.|+++..+|+.|+.+|+|++||++.. ...+.+.+|...+.++.|+| -+.+++.|+.|+.+++||++...+...+.+|.
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~ 154 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT 154 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhh-hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCc
Confidence 99999999999999999999999987 67778999999999999999 88899999999999999999888999999999
Q ss_pred CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEE
Q 002511 186 KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (914)
Q Consensus 186 ~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (914)
..|.++.|+|+|. +++.|++|..++|||...|+.+..|..|...+.++.|+|..-++++|+.|++|++||+.+...+.
T Consensus 155 ~vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 155 RVVDVLRLSPDGR--WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred ceeEEEeecCCCc--eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 9999999999998 89999999999999999999999999999999999999998899999999999999999999998
Q ss_pred EeecCCccEEEEEEecCCCEEEEEecCCeE
Q 002511 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (914)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 295 (914)
........|.+..|+|++..+.+|......
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchhhhh
Confidence 888888899999999999998888765444
No 140
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.91 E-value=4.3e-22 Score=204.95 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=109.8
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCCCceeE------EeeecCCCeEEEEEecCCCEEEEEECCCEEE
Q 002511 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAK------SFEVTELPVRSAKFVARKQWVVAGADDMFIR 82 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (914)
.+.+|++.|+.+.|+| +..+||+++.|..|+||.+..|...+ .+.+.+-.|-|+.|+|...-|...+..|.++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 4678999999999999 45589999999999999998542211 2233455899999999887777777889999
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (914)
|||+.+++.+..+.+|.+.|.+..|+.||..|++++.|..|+|||.+......+...+|
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 99999999999999999999999999999999999999999999988654444444444
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=200.14 Aligned_cols=285 Identities=14% Similarity=0.206 Sum_probs=217.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCC--CeeeEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCce
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNT--MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWM 133 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t--~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~ 133 (914)
.++|+++.|+|..+.+++++.|+.++||.++. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+. +
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-k 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-K 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-c
Confidence 46899999999999999999999999998763 344666666678999999999998 8899999999999999876 3
Q ss_pred EEEE--eecC-cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 134 CTQI--FEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 134 ~~~~--~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
..+. ..++ ...+.....+| ++++++..+..|.|.+....+++.+.+++ ..+.|..++|+.++. .|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk--~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK--ELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc--EEEEEcCCce
Confidence 3322 2233 34567778899 88999999999999999999988887776 578899999998876 6888888999
Q ss_pred EEEEECCCCceEEEecCccc-ceEEEEEeCCCCEEEEEECCCeEEEEeCCC------ceeEEEeecCCccEEEEEEecCC
Q 002511 211 AKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGTVRIWHATT------YRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
|.+||++...+++.+....+ .-+++|.++++.+||+|+..|.|.|||..+ .+++.++..-...|.+++|++++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999999999888863322 246788889999999999999999999653 34555665556789999999999
Q ss_pred CEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002511 284 RRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (914)
Q Consensus 284 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (914)
+.||+++.-..=.+.+ +.+.+....-..+. ....-..+++++|||
T Consensus 448 qiLAiaS~~~knalrL-------------------------VHvPS~TVFsNfP~----------~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 448 QILAIASRVKKNALRL-------------------------VHVPSCTVFSNFPT----------SNTKVGHVTCMAFSP 492 (514)
T ss_pred hhhhhhhhccccceEE-------------------------EeccceeeeccCCC----------CCCcccceEEEEecC
Confidence 9999987643222211 11111100000000 122234678899999
Q ss_pred CCCEEEEEc-CCcEEEEEe
Q 002511 364 NGRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 364 ~g~~lav~~-~~~~~i~~~ 381 (914)
.|.++|+|. .|++.+|.+
T Consensus 493 ~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCceEEeecCCCceeeEee
Confidence 999999998 788888864
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.9e-24 Score=223.34 Aligned_cols=244 Identities=19% Similarity=0.315 Sum_probs=205.6
Q ss_pred CEEEEEEcC-CCCEEEEEecCCcEEEEeCCC---CceeEEeeecCCCeEEEEEecCC-CEEEEEECCCEEEEEECCCCee
Q 002511 17 RVKSVDLHP-SEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 17 ~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
.+..+.|+. +.++||+++.+|.|.+||+.. .+.+..|..|+..++++.|++.. .+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 355677875 567999999999999999987 56667788999999999999864 6788999999999999999998
Q ss_pred eEEEecCCCCEEEEEEeC-CCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
..++.+....|+.+.|+| .+.+++++.+.|.+.+||++...++...+..|.++|.|+.|+| +..+|++|+.|++|+||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIW 247 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEE
Confidence 999999999999999999 4678899999999999999998888888999999999999999 99999999999999999
Q ss_pred ECCCCCCcEEEe-cCCCCeeEEEEeeCCCcCEEEEEEc--CCeEEEEECCCCc-eEEEecCcccceEEEEEeC-CCCEEE
Q 002511 171 NLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSD--DHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHP-ELPIII 245 (914)
Q Consensus 171 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~ 245 (914)
|+.+++...... ....+|.++.|-|.... .|++++. |-.|+|||++..- +..++..|...++.++|.. +...+.
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSY-HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccc-hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 998665443322 24578999999998764 6777654 7789999998543 5677888999999999976 455788
Q ss_pred EEECCCeEEEEeCCCce
Q 002511 246 TGSEDGTVRIWHATTYR 262 (914)
Q Consensus 246 ~~~~dg~v~iwd~~~~~ 262 (914)
+++.||+|..-..++..
T Consensus 327 s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eecCccHHHHhhhhccc
Confidence 99999988766555443
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=7e-23 Score=205.40 Aligned_cols=274 Identities=20% Similarity=0.341 Sum_probs=218.6
Q ss_pred cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--eEEEEee--cCcccEEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 002511 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW--MCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
.|..-|..+.+|...+++++|+. |.|+|||+.... .....+. ....+|.++...| |++.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 47888899999999999999886 789999997531 2222222 2457899999999 9999999999999999999
Q ss_pred CCCCCcEEEecCC--CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC
Q 002511 173 GSPDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 173 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 250 (914)
...++........ .....++.+|+.+ +.++++.||.|.|||+++...++.|++|...+.||.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 8877654443333 3455677888776 78999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeec
Q 002511 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (914)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (914)
.+||.||+++++.+...... ..|.++.++|.+.++++|..++.+.+-....+.-
T Consensus 573 ntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlavGMens~vevlh~skp~k------------------------- 626 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK------------------------- 626 (705)
T ss_pred cceeehhhhhhhhhhhhhhh-hhheecccCCCccceeeecccCcEEEEecCCccc-------------------------
Confidence 99999999999877665544 7899999999999999999999988731111110
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEeecc----cccccCceeEEEEecCCcEEE
Q 002511 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAW----RNRSFGSALEFVWSSDGEYAV 405 (914)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~----~~~~~~~~~~~~~s~~~~~l~ 405 (914)
..+..++.-|-++.|++.|+++++.+ |+-+-.|....+ ..+....|+++.+|.|.+|+|
T Consensus 627 ----------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 627 ----------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIV 690 (705)
T ss_pred ----------------eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEE
Confidence 01233444556899999999998887 888888865433 455667889999999999999
Q ss_pred Eec-CCeEEEec
Q 002511 406 RES-SSKIKIFS 416 (914)
Q Consensus 406 ~~~-~~~i~v~~ 416 (914)
+++ +.+..||.
T Consensus 691 TGSGdkkATVYe 702 (705)
T KOG0639|consen 691 TGSGDKKATVYE 702 (705)
T ss_pred ecCCCcceEEEE
Confidence 998 55777774
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4e-24 Score=224.03 Aligned_cols=239 Identities=24% Similarity=0.418 Sum_probs=221.7
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
.+.+..|+..|.++..-..++.+++|+.+..+-+|.+..-..+..+.+|+.+|.++.|++...+|++|+.+|+|++||+.
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 35677899999999997888999999999999999988877788899999999999999999999999999999999999
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
.++.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||++.. -+...+.+|...+..+.|+| ++.+++.++.|.++
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTV 178 (825)
T ss_pred hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecC-CCceeeccCCccee
Confidence 99999999999999999999999999999999999999999965 58888889999999999999 99999999999999
Q ss_pred EEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEE
Q 002511 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247 (914)
Q Consensus 168 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 247 (914)
++||+..++....+..|.+.+..+.++|..- ++..|+.|+++++||+++...+.........|.+.+|+|++..+++|
T Consensus 179 ki~d~~agk~~~ef~~~e~~v~sle~hp~e~--Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 179 KIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV--LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred eeecccccccccccccccccccccccCchhh--hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence 9999999999999999999999999988765 78999999999999999988888888888899999999999998888
Q ss_pred ECC
Q 002511 248 SED 250 (914)
Q Consensus 248 ~~d 250 (914)
...
T Consensus 257 ~q~ 259 (825)
T KOG0267|consen 257 EQI 259 (825)
T ss_pred chh
Confidence 755
No 145
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.9e-23 Score=215.50 Aligned_cols=278 Identities=21% Similarity=0.345 Sum_probs=220.4
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc----eeEEeeec---CCCeEEEEEec-CCCEEEEEECCCEEEEEECC
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVT---ELPVRSAKFVA-RKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~----~~~~~~~~---~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~ 87 (914)
....+|...++-..|++++. ..+.||.+.... +...+... ...+..++|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45677888898888988874 467888765432 11111111 12456677874 46889999999999999998
Q ss_pred C---CeeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 88 T---MDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 88 t---~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
. .+.+..|..|...++++.|++.. .+|++|+.||+|++||++.. ....++.+....|..+.|+|..++.|+++..
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecC
Confidence 6 45566788999999999999976 46789999999999999987 5566667788889999999999999999999
Q ss_pred CCcEEEEECCCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc--eEEEecCcccceEEEEEeCC
Q 002511 164 DRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS--CVQTLEGHTHNVSAVCFHPE 240 (914)
Q Consensus 164 dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~ 240 (914)
.|.+.+||++... +...+..|.++|.|+.|+|+.. +|++|+.|+.|+|||..+++ .+.++. ...+|..+.|-|.
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~--~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE--WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPA 274 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCc--eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccC
Confidence 9999999998764 5677889999999999999655 99999999999999998654 344444 4568999999998
Q ss_pred CCE-EEEEE--CCCeEEEEeCCC-ceeEEEeecCCccEEEEEEec-CCCEEEEEecCCeEEEE
Q 002511 241 LPI-IITGS--EDGTVRIWHATT-YRLENTLNYGLERVWAIGYMK-SSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 241 ~~~-l~~~~--~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg~i~i~ 298 (914)
.++ |++++ .|-.|+|||++. +-+..++..|...++.++|.. |...+.+++.||++...
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 764 45544 477899999874 446778888999999999976 34567788888888653
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.7e-20 Score=199.79 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=203.5
Q ss_pred CEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEE-EEEECCCEEEEEECCCCeeeEEEecCCCCEEEEE
Q 002511 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWV-VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (914)
Q Consensus 28 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~ 106 (914)
..+++++.+|.|++||..+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5678888999999999999998888876544 6789999999977 5667789999999999988877765544 57789
Q ss_pred EeCCCCEEEEE-EcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC-cEEEEECCCCCCcEEEecC
Q 002511 107 VHPTLPYVLSS-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAH 184 (914)
Q Consensus 107 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~ 184 (914)
|+|+++.++++ +.++.|++||+.+. .....+.. ...+.+++|+| ++..+++++.++ .+.+||..+++...... .
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~ 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-KVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-V 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-c
Confidence 99999987655 56899999999986 44444432 23467899999 888888888765 46778988776554443 2
Q ss_pred CCCeeEEEEeeCCCcCEEE-EEEcCCeEEEEECCCCceEEEecCcc-------cceEEEEEeCCCCEEEEE-ECCCeEEE
Q 002511 185 QKGVNCVDYFTGGDKPYLI-TGSDDHTAKVWDYQTKSCVQTLEGHT-------HNVSAVCFHPELPIIITG-SEDGTVRI 255 (914)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~~~-~~dg~v~i 255 (914)
...+.++.|+|++. +++ ++..++.|++||+.+++.+..+..+. .....++|+|++++++++ +.++.|.+
T Consensus 156 ~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 33457889999887 454 44568999999999988776654221 123468899999986543 45678999
Q ss_pred EeCCCceeEEEeecCCccEEEEEEecCCCEEEEE-ecCCeEEEEcCCCc
Q 002511 256 WHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIGREE 303 (914)
Q Consensus 256 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~~~~~~ 303 (914)
||+.+++....+.. ...+.+++|+|+|++|+++ ..+|.|.+|.....
T Consensus 234 ~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 234 VDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 99998887765543 3578999999999999886 46899999865543
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=185.00 Aligned_cols=236 Identities=16% Similarity=0.280 Sum_probs=183.4
Q ss_pred eEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee
Q 002511 60 VRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (914)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (914)
-.|+.|++.|.+||+|+.+|.|.|||+.|...-+.+.+|..+|++++||++|+.|+++|.|..|.+||+..+. +.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999984 555444
Q ss_pred cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCC----eeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG----VNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
..++|+.+.|+|.+.+.++++-.+..-.+-++..++....-....+. -.+..|.+.|+ ++++|...|.+.++|
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~--yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK--YIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC--EEEEecCcceEEEEe
Confidence 56789999999988888888777766666666543221111111111 12234555555 999999999999999
Q ss_pred CCCCceEEEecCcc-cceEEEEEeCCCCEEEEEECCCeEEEEeCCCc-------eeE--EEeec--CCccEEEEEEecCC
Q 002511 216 YQTKSCVQTLEGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTY-------RLE--NTLNY--GLERVWAIGYMKSS 283 (914)
Q Consensus 216 ~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~-------~~~--~~~~~--~~~~v~~i~~~~~~ 283 (914)
..+.+++..++... ..|..+.++..|++|+..+.|..||.|+++.- .+. +.++. ..-.-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999999888666 78999999999999999999999999997621 111 11111 11234578999999
Q ss_pred CEEEEEecC-CeEEEEc
Q 002511 284 RRIVIGYDE-GTIMVKI 299 (914)
Q Consensus 284 ~~l~~~~~d-g~i~i~~ 299 (914)
.+++.|+.. -.++||.
T Consensus 262 eYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWE 278 (405)
T ss_pred cEEEeccccceeEEEEe
Confidence 999887743 3455654
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.6e-20 Score=198.45 Aligned_cols=265 Identities=12% Similarity=0.132 Sum_probs=198.6
Q ss_pred hhhcccCCCCEEEEEEcCCCCEE-EEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCCEEEEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWI-LASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYN 85 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~l-a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd 85 (914)
.+.+..| ..+.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++||
T Consensus 24 ~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 24 TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3445444 447889999999977 4566789999999999888777765443 5678999999987665 4589999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC-eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE-EEeC
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA-SASL 163 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~ 163 (914)
+.+++.+..+..+ ..+.+++|+|+|.++++++.++ .+.+||..++. ...... ....+.+++|+| ++..++ ++..
T Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~ 177 (300)
T TIGR03866 102 IETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTA-DGKELWVSSEI 177 (300)
T ss_pred CCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECC-CCCEEEEEcCC
Confidence 9998877777633 3468899999999999888765 46778988763 333222 223457789999 677665 4456
Q ss_pred CCcEEEEECCCCCCcEEEecCC-----C--CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEE
Q 002511 164 DRTIKIWNLGSPDPNFTLDAHQ-----K--GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 236 (914)
++.|++||+.+++....+..+. . ....+.|+|+++. .+++.+.++.+.+||.++++.+..+. +...+.+++
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~ 255 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT-AFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLA 255 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEE
Confidence 9999999999887666554221 1 2346788888873 23444557789999999888776554 445789999
Q ss_pred EeCCCCEEEEE-ECCCeEEEEeCCCceeEEEeecCCccEEEEEEec
Q 002511 237 FHPELPIIITG-SEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 237 ~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (914)
|+|+|++|+++ +.+|.|++||+.+++.+..+..+ ...+.++++|
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999886 46899999999999999888876 5558888765
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.5e-22 Score=197.18 Aligned_cols=244 Identities=18% Similarity=0.292 Sum_probs=193.6
Q ss_pred EEEEEcC-------CCCEEEEEecCCcEEEEeCCCCc---------------------eeEEeeecCCCeEEEEEecC-C
Q 002511 19 KSVDLHP-------SEPWILASLYSGTVCIWNYQSQT---------------------MAKSFEVTELPVRSAKFVAR-K 69 (914)
Q Consensus 19 ~~~~~sp-------~~~~la~~~~~g~v~iwd~~~~~---------------------~~~~~~~~~~~v~~~~~s~~-~ 69 (914)
.|++|.. .|+++|+|+.+..|.|||+.-.. .-..-.+|+..|..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 36799999999999999975211 00112358888899999876 4
Q ss_pred CEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEE
Q 002511 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV 148 (914)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~ 148 (914)
+.||+||.|.+|++||+.++++..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|.+........+ ...+.|-.+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEE
Confidence 578999999999999999999999999999999999999964 578899999999999999532222222 245679999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce--EEEe
Q 002511 149 TFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTL 225 (914)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~ 225 (914)
+|+|...+.+++++.||+|+-+|+|+. ++++++..|..+|.++++++...+ ++++++.++.|++|++....+ +...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~-~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG-LLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc-ceeeccccceEEEEeecCCCCcccccc
Confidence 999988999999999999999999986 899999999999999999887655 899999999999999875333 2222
Q ss_pred cCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCCCceeE
Q 002511 226 EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLE 264 (914)
Q Consensus 226 ~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 264 (914)
.-.-+...|.++.|+-. +++.|+..+.+++||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 22233466778888765 5667888888999999877643
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-20 Score=178.46 Aligned_cols=252 Identities=15% Similarity=0.245 Sum_probs=197.2
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC----ceeEEeeecCCCeEEEEEec--CCCEEEEEECCCE
Q 002511 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ----TMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMF 80 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~ 80 (914)
+...-.+|.+-|.++.|.+.|+.+|+++.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|++
T Consensus 5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34445689999999999999999999999999999996543 34455678999999999976 4899999999999
Q ss_pred EEEEECC---------CCeeeEEEecCCCCEEEEEEeCC--CCEEEEEEcCCeEEEEECCCC-----ceEEEEee-----
Q 002511 81 IRVYNYN---------TMDKVKVFEAHTDYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKG-----WMCTQIFE----- 139 (914)
Q Consensus 81 i~vwd~~---------t~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~----- 139 (914)
+.||.-. ......++......|+.+.|.|. |-.|++++.||.++||+.-.. +.+...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999752 11234456667788999999995 567899999999999986543 22222222
Q ss_pred --cCcccEEEEEEccC--CCCEEEEEeCC-----CcEEEEECCCCC----CcEEEecCCCCeeEEEEeeCCCcC--EEEE
Q 002511 140 --GHSHYVMQVTFNPK--DTNTFASASLD-----RTIKIWNLGSPD----PNFTLDAHQKGVNCVDYFTGGDKP--YLIT 204 (914)
Q Consensus 140 --~~~~~i~~~~~~p~--~~~~l~~~~~d-----g~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~--~l~~ 204 (914)
.+..+..|+.|+|. ...+|++|+.+ +.+.||....+. .+.++.+|..+|+.++|.|+-... +|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 45667889999972 24578888765 478888765433 344567899999999999985433 5888
Q ss_pred EEcCCeEEEEECCCC--------------------ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 205 GSDDHTAKVWDYQTK--------------------SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|..|.+.|.||+||+|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 999998731 1345577899999999999999999999999999999854
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=203.46 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=207.6
Q ss_pred ecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC-eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce
Q 002511 55 VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM 133 (914)
Q Consensus 55 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 133 (914)
.|...-+.++|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++.. +.+|++|+.+++|.+|.+.++ .
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~-~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG-E 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC-C
Confidence 57778899999999999999999999999998765 4444555477788887765 458999999999999999987 5
Q ss_pred EEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEE
Q 002511 134 CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (914)
Q Consensus 134 ~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (914)
...++....-++.+++++. ++++++.|+.|-.|++.++......+.+.+|..+|.++.|+|.++ +|++.+.||.|++
T Consensus 88 ~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~--fLAvss~dG~v~i 164 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN--FLAVSSCDGKVQI 164 (933)
T ss_pred ccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC--EEEEEecCceEEE
Confidence 5556666778899999998 899999999999999999999999999999999999999999887 8999999999999
Q ss_pred EECCCCceEEEecCc--------ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC--CccEEEEEEecCC
Q 002511 214 WDYQTKSCVQTLEGH--------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG--LERVWAIGYMKSS 283 (914)
Q Consensus 214 wd~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~ 283 (914)
||++++.+..++.+- ...+..++|+|+|..++..+.|+.|++|+..++.....+... ...+..++|+|.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999998876665431 334678899999888888888999999999999988777643 3448999999999
Q ss_pred CEEEEEecCCeEEEEcCC
Q 002511 284 RRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 284 ~~l~~~~~dg~i~i~~~~ 301 (914)
++||+++.+|.|.+|...
T Consensus 245 ~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVD 262 (933)
T ss_pred cEEeeeccCCcEEEEecc
Confidence 999999999999998544
No 152
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.88 E-value=3.4e-19 Score=180.69 Aligned_cols=623 Identities=16% Similarity=0.175 Sum_probs=335.4
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEE-eC-------CCCEEEEEEcCCeEEEEE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAV-HP-------TLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~-s~-------~~~~l~~~~~dg~i~iwd 127 (914)
|...|.|+.|+.+...+.++ +|..+.+|+--+...........+.+....+ -+ ....++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 55567799999887766555 4555556654333333333322222221111 11 223688899999999987
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
-.. ........|.+.+.+-.|+| ++.-|++++.||.|++|.- +|-...++.....+|.|++|.|+.+. .+.+.
T Consensus 92 k~~--rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~-vl~c~-- 164 (737)
T KOG1524|consen 92 KSA--RVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNS-IVFCQ-- 164 (737)
T ss_pred ccc--hhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCc-eEEec--
Confidence 443 46667788999999999999 8999999999999999984 55444455556788999999999875 33333
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEE
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIV 287 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 287 (914)
.+.+.|=.+.....+...+.|.+-|.++.|+|...++++|++|-..++||. .|+.+.+-..|..+|++++|.|+ ..++
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-ccee
Confidence 456777677666667778899999999999999999999999999999995 47888777888899999999999 6666
Q ss_pred EEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCE
Q 002511 288 IGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF 367 (914)
Q Consensus 288 ~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~ 367 (914)
+++.+ +.++. ....+.+..++||+||.-
T Consensus 243 v~S~n-t~R~~---------------------------------------------------~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 243 LWSYN-TARFS---------------------------------------------------SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eeeee-eeeec---------------------------------------------------CCCccceEEEEEcCCCce
Confidence 66532 22220 111224558999999999
Q ss_pred EEEEc-CCcEEEEEeecccccccCceeEEEEecCCcE-EEEecCCeEEEeccCcccceeeecCcccceee----cCcEEE
Q 002511 368 VVVCG-DGEYIIYTALAWRNRSFGSALEFVWSSDGEY-AVRESSSKIKIFSKNFQEKRSVRPTFSAERIY----GGTLLA 441 (914)
Q Consensus 368 lav~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~~~i~v~~~~~~~~~~~~~~~s~~~i~----~g~~La 441 (914)
+++++ .|.+.+-.+-..+. . .+.+ +.......|.+.|+.......+ .| |+++. +-.+|+
T Consensus 271 ~a~gt~~G~v~~A~~ieq~l-~-----------~~n~~~t~~~r~~I~vrdV~~~v~d~L--E~-p~rv~k~sL~Y~hLv 335 (737)
T KOG1524|consen 271 ATCGTSTGQLIVAYAIEQQL-V-----------SGNLKATSKSRKSITVRDVATGVQDIL--EF-PQRVVKFSLGYGHLV 335 (737)
T ss_pred eeccccCceEEEeeeehhhh-h-----------hccceeEeeccceEEeehhhhhHHHHh--hC-ccceeeeeeceeEEE
Confidence 99998 55554322211110 0 0111 1122233455554322111100 11 11111 245777
Q ss_pred EEeCCeEEEEeccCCcEEEEEEcceeEEEEcCCC-CEEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeee
Q 002511 442 MCSNDFICFYDWAECRLIRRIDVTVKNLYWADSG-DLVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHE 520 (914)
Q Consensus 442 ~~~~~~i~~~d~~~~~~i~~~~~~i~~v~~s~dg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 520 (914)
+++...|++|.-........+++.-..+..-..+ +++.+.+...+.++-|..-........|. ..+.+..
T Consensus 336 vaTs~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~---------~~dlL~~ 406 (737)
T KOG1524|consen 336 VATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGS---------QIDLLTW 406 (737)
T ss_pred EEeccEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCc---------ccccccc
Confidence 7777788888755443333333211111111111 12222222233333222111100000000 0111111
Q ss_pred eeeEEEeeEEecCEEEEEcc-CCe-EEEEEC-------CEEeEEEecccceEEEEE------eecCCEEEEEecCCceEE
Q 002511 521 TNERVRTGLWVGDCFIYNNS-SWR-LNYCVG-------GEVTTMFHLDRPMYLLGY------LASQSRVYLIDKEFNVMG 585 (914)
Q Consensus 521 ~~~~i~~~~w~~~~~i~~~~-~~~-l~~~~~-------~~~~~~~~~~~~~~~~~~------~~~~~~l~~~d~~~~~~~ 585 (914)
+ +.....|.+..... .+. +++|-. ++-..+ ++...++.+ .++...+.|+|+++.++.
T Consensus 407 ---r--tlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L---~hk~~IveIAldqkG~tnDrkVAFiDknrdl~I 478 (737)
T KOG1524|consen 407 ---R--TLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSL---RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFI 478 (737)
T ss_pred ---e--eeecccceEEeecCCCCeeEEeccCCCCCcccCCcccc---chhhhHHHhHhhccCCCccceEEEEecCCcEEE
Confidence 1 11111222333222 222 222221 111111 111112111 256788999999998876
Q ss_pred EEe-----cchhHhHHHHHHccCHHHHhhh-------------cCCCCcchHHHHHHHHHhCCChhhhhhcccCcccc-e
Q 002511 586 YTL-----LLSLIEYKTLVMRGDLERANEI-------------LPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYR-F 646 (914)
Q Consensus 586 ~~l-----~~~~~~~~~~~~~~~~~~a~~~-------------l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-f 646 (914)
-.. ...++...+.+....+.+--.+ +|+.--...+-+.+-+.. ..+-++.+.|... |
T Consensus 479 tsvKrfgkee~I~KiGTmVhtLawndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlie----rdt~efgKnpqIvsF 554 (737)
T KOG1524|consen 479 TSVKRFGKEEEIYKIGTMVHTLAWNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIE----RDTTEFGKNPQIVSF 554 (737)
T ss_pred EeehhcCchhhhhhhhhhhhhhhhccccceeeeeccceEEEEEcCCcceecccccchhhee----cchhhccCCcceeee
Confidence 443 2234444444433222221111 111100011111111111 1122222222221 2
Q ss_pred -------------eeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhh---HHHHHHHcCCcchhHHHHHhcCCH
Q 002511 647 -------------ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEM---AEGCMKQAMDLSGLLLLYSSLGDA 710 (914)
Q Consensus 647 -------------~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~---A~~~y~~~~d~~~l~~l~~~~g~~ 710 (914)
-+.+....+- .+.-+.....+|++--+.|-.-++-.+ -.-+-.+-++..-....|...++.
T Consensus 555 vgNqvtirrsdG~LlpisV~py~---~iL~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 555 VGNQVTIRRSDGALLPISVNPYP---EILHEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred eccEEEEEeccCceEeeeccccH---HHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 1122222222 233344456677766666554443222 111222334555555567777777
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCC-ChHHHHHHHHHHhhh
Q 002511 711 EGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLP-SKVSEIVAIWRKDLQ 779 (914)
Q Consensus 711 ~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~-~~~~~~~~~~~~~L~ 779 (914)
+.+..+-++.....+-..-.+..+.+|+.-+|.-++++.+-...|+.++-.+-. .++-++-.++|+++.
T Consensus 632 dKVsyin~iK~ltske~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~v~ 701 (737)
T KOG1524|consen 632 DKVSYINHIKALTSKEEQMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKELVP 701 (737)
T ss_pred hhHHHHHHHhccCcHHHHHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHHHH
Confidence 777777777776666666666677788888999999999888888877765433 223333344444433
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.2e-20 Score=174.52 Aligned_cols=245 Identities=18% Similarity=0.330 Sum_probs=194.8
Q ss_pred eecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC----CeeeEEEecCCCCEEEEEEeC--CCCEEEEEEcCCeEEEEE
Q 002511 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT----MDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 54 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t----~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd 127 (914)
.+|..-|.++.|.+.|+.+|+|+.|++|+|||.+. ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 35788899999999999999999999999999643 244566789999999999976 488999999999999996
Q ss_pred CC--------CCceEEEEeecCcccEEEEEEccC-CCCEEEEEeCCCcEEEEECCCCCCcE------EE-------ecCC
Q 002511 128 WE--------KGWMCTQIFEGHSHYVMQVTFNPK-DTNTFASASLDRTIKIWNLGSPDPNF------TL-------DAHQ 185 (914)
Q Consensus 128 ~~--------~~~~~~~~~~~~~~~i~~~~~~p~-~~~~l~~~~~dg~i~vwd~~~~~~~~------~~-------~~~~ 185 (914)
-. ..+....++......|+.+.|.|. -+-.+++++.||.|+||+.-..-.+. .+ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 124455667777889999999993 35678999999999999875432211 11 1355
Q ss_pred CCeeEEEEeeCC-CcCEEEEEEcC-----CeEEEEECCCCc----eEEEecCcccceEEEEEeCCC----CEEEEEECCC
Q 002511 186 KGVNCVDYFTGG-DKPYLITGSDD-----HTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPEL----PIIITGSEDG 251 (914)
Q Consensus 186 ~~v~~~~~~~~~-~~~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg 251 (914)
.+..|+.|+|.. ..++|++|+.+ +.++||....+. .+.++.+|..+|+.++|.|+- .+|++++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899998754 33478888766 578899765432 456677899999999999953 4899999999
Q ss_pred eEEEEeCCCc--------------------eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 252 TVRIWHATTY--------------------RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 252 ~v~iwd~~~~--------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
|+||++... +.+..+..|.+.||.+.|+-.|..|++.++||.+++|.
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 999998731 13456778889999999999999999999999999984
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=188.27 Aligned_cols=252 Identities=19% Similarity=0.280 Sum_probs=191.6
Q ss_pred eCCCCceeEEeeecCCCeEEEEEecCC--CEEEEEECCCEEEEEECCCC----eeeEEEecCCCCEEEEEEeCCC-CEEE
Q 002511 43 NYQSQTMAKSFEVTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNTM----DKVKVFEAHTDYIRCVAVHPTL-PYVL 115 (914)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~t~----~~~~~~~~~~~~i~~~~~s~~~-~~l~ 115 (914)
|+.+.........+.++|++++|+|.. +.+++|...|+|-+||+.+. ..+..+..|+.+|.++.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 333444455667789999999999965 47888888999999999532 2356677899999999999965 5788
Q ss_pred EEEcCCeEEEEECCCCceEEEEeec--CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC-cEEEecCCCCeeEEE
Q 002511 116 SSSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVD 192 (914)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~ 192 (914)
+.|.||+|++-|+++. .....+.. ....+.++.|+. +...++.+..=|...+||++++.. ...+..|...|+.++
T Consensus 252 ssSyDGtiR~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeccCceeeeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999999876 33223222 445677788887 455566666666999999998765 566777889999999
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCc----eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC----CceeE
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKS----CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT----TYRLE 264 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~ 264 (914)
++|-... ++++++.|++.+|||++.-. ++...-.|...|.+..|||.+..|++.+.|..|+|||.. ...+.
T Consensus 330 ~NP~~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 330 LNPVCPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred cCCCCch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 9998765 89999999999999998622 223334589999999999998889999999999999984 22333
Q ss_pred EEeecCCc-----cEEEEEEecCCCEEEEEecCCeEEE
Q 002511 265 NTLNYGLE-----RVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 265 ~~~~~~~~-----~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
.++..... ......|.|+..++++|-.-..|-+
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv 446 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDV 446 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeE
Confidence 33332211 2345679999999998887666665
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.8e-21 Score=192.90 Aligned_cols=262 Identities=13% Similarity=0.193 Sum_probs=211.1
Q ss_pred CEEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCc---eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 17 RVKSVDLHPSEPWILASL--YSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~--~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
.+.++.|+.... |++++ .|..+++|. ..|+ ....-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 389999998765 55443 477888997 3333 2111111112334555555568999999999999999997777
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee-cCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
.+.++.|.+.|+++.++....+|++++..|.|.|..+.++.. ...+. +....|.-+.|+|....+|.+++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 788899999999999999999999999999999999998833 33343 3345567899999777788899999999999
Q ss_pred ECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC
Q 002511 171 NLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (914)
Q Consensus 171 d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 249 (914)
|+.+..++..+ ..|..+...|+|+|.... +|++.+.|..|.+||.+.......+. ...+.+.++|+++|.+|+.|+.
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~-l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEA-LLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccc-eEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 99888887665 578899999999998765 89999999999999999776665554 5678999999999999999999
Q ss_pred CCeEEEEeCCCc-eeEEEeecCCccEEEEEEecCC
Q 002511 250 DGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 250 dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
.|.|..||++.. .++.++..|...|++++|-|..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999864 4788888999999999998864
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=6.4e-21 Score=185.38 Aligned_cols=247 Identities=20% Similarity=0.295 Sum_probs=191.3
Q ss_pred hhhhcccCCCCEEEEEEcCCC--CEEEEEecCCcEEEEeCCC----------------CceeEEeeecCCCeEEEEEecC
Q 002511 7 IKRKLAQRSERVKSVDLHPSE--PWILASLYSGTVCIWNYQS----------------QTMAKSFEVTELPVRSAKFVAR 68 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~--~~la~~~~~g~v~iwd~~~----------------~~~~~~~~~~~~~v~~~~~s~~ 68 (914)
+.....+|.+.+..+.-++-+ .+.|+-+..|.|.||++.. .+.+.++.+|.+.=..+.|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 334455788888888877755 4555566799999999753 3567788889999999999993
Q ss_pred C-CEEEEEECCCEEEEEECCCCeee---EEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCc-eEEEEeecCc
Q 002511 69 K-QWVVAGADDMFIRVYNYNTMDKV---KVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHS 142 (914)
Q Consensus 69 ~-~~l~~g~~dg~i~vwd~~t~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 142 (914)
. ..|++|..-+.|++|...+|... ..+.+|...|..++|||.. ..|++||-||+|+|||++.+. ........|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 2 24888888889999999887653 3456799999999999964 578899999999999999872 2333447899
Q ss_pred ccEEEEEEccCCCCEEEEEeCCCcEEEEECCC---CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC
Q 002511 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 143 ~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
+.|..+.|+. ...+|++|+.||+++|||+++ ++++..++-|..+|+++.|+|.... .|++++.|..|.|||+..-
T Consensus 303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-VIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-eEEeccCCCcEEEEEeecc
Confidence 9999999998 555999999999999999975 5678899999999999999998765 7888999999999998531
Q ss_pred c----------------eEEEecCc--ccceEEEEEeCCCC-EEEEEECCCeEEEE
Q 002511 220 S----------------CVQTLEGH--THNVSAVCFHPELP-IIITGSEDGTVRIW 256 (914)
Q Consensus 220 ~----------------~~~~~~~~--~~~v~~i~~~~~~~-~l~~~~~dg~v~iw 256 (914)
. +.+-+-.| ...+..+.|+++-+ ++++.+.|| +.||
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1 11111123 34577889998765 677777776 3344
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.4e-20 Score=193.30 Aligned_cols=245 Identities=20% Similarity=0.277 Sum_probs=198.4
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCC--EEEEEEcCC-----
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP--YVLSSSDDM----- 121 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg----- 121 (914)
+-..+.+|.+.|+|+...|.|.+|++|+.||+|+||.+.||.+++++.- .+.|.|++|+|.+. .|+++....
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 3355789999999999999999999999999999999999999999874 55899999999765 344433322
Q ss_pred ---------------------------eEEEEECCC---CceEEEEeecCcccEEEEEEccCCCCEEEEEeCC---CcEE
Q 002511 122 ---------------------------LIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD---RTIK 168 (914)
Q Consensus 122 ---------------------------~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d---g~i~ 168 (914)
.+..|.-.. ...-..+...|...|.++.|+. .|.+|++...+ ..|.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVL 549 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEE
Confidence 222332221 1111234446788899999998 89999987654 5789
Q ss_pred EEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEE
Q 002511 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS 248 (914)
Q Consensus 169 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 248 (914)
|.++........+....+.|.++.|+|... ++++++ ...|+|||+.....++.+......|++++.+|.|.-|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999987776666766778899999998776 677776 45799999998877777777778899999999999999999
Q ss_pred CCCeEEEEeCCCc-eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 249 EDGTVRIWHATTY-RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 249 ~dg~v~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.|+.+..+|+.-. ++.+++..|...+++++|++.-..+++|++||.++++
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999998754 4677888999999999999999999999999999985
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6.9e-21 Score=185.18 Aligned_cols=241 Identities=21% Similarity=0.329 Sum_probs=184.5
Q ss_pred ecCCCeEEEEEecCC--CEEEEEECCCEEEEEECCC----------------CeeeEEEecCCCCEEEEEEeCCC-CEEE
Q 002511 55 VTELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT----------------MDKVKVFEAHTDYIRCVAVHPTL-PYVL 115 (914)
Q Consensus 55 ~~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~t----------------~~~~~~~~~~~~~i~~~~~s~~~-~~l~ 115 (914)
.|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+++.++.+|...=..++|||-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 356667777666654 4566667899999999742 35677888999888999999932 2588
Q ss_pred EEEcCCeEEEEECCCCc-eE-EEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC--CcEEEecCCCCeeEE
Q 002511 116 SSSDDMLIKLWDWEKGW-MC-TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCV 191 (914)
Q Consensus 116 ~~~~dg~i~iwd~~~~~-~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~ 191 (914)
+|.--+.|++|...++. .. ...+.+|+..|-.++|+|...+.|++|+.||+|+|||++++. +....+.|.+.|+.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI 308 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI 308 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE
Confidence 88878899999987752 11 234667999999999999889999999999999999999873 333447899999999
Q ss_pred EEeeCCCcCEEEEEEcCCeEEEEECCC---CceEEEecCcccceEEEEEeCC-CCEEEEEECCCeEEEEeCCCcee----
Q 002511 192 DYFTGGDKPYLITGSDDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRIWHATTYRL---- 263 (914)
Q Consensus 192 ~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~v~iwd~~~~~~---- 263 (914)
.|+.... +|++|++||+++|||+++ ++++.+++-|..+|+++.|+|. ...|++++.|..|.|||+..-.-
T Consensus 309 SWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 309 SWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred EccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9976554 899999999999999985 6788999999999999999994 45788889999999999863211
Q ss_pred ------------EEEeec--CCccEEEEEEecCCC-EEEEEecCCeEEE
Q 002511 264 ------------ENTLNY--GLERVWAIGYMKSSR-RIVIGYDEGTIMV 297 (914)
Q Consensus 264 ------------~~~~~~--~~~~v~~i~~~~~~~-~l~~~~~dg~i~i 297 (914)
.+.+-. ....+..+.|+++-. ++++.+.+|.-++
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 011111 224567788888643 5555666665544
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=187.28 Aligned_cols=275 Identities=19% Similarity=0.281 Sum_probs=207.8
Q ss_pred EEEEcCCCCEEEEEecC---Cc--EEEEeCCCCceeEEeeec----CCCeEEEEEec-------CCCEEEEEECCCEEEE
Q 002511 20 SVDLHPSEPWILASLYS---GT--VCIWNYQSQTMAKSFEVT----ELPVRSAKFVA-------RKQWVVAGADDMFIRV 83 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~---g~--v~iwd~~~~~~~~~~~~~----~~~v~~~~~s~-------~~~~l~~g~~dg~i~v 83 (914)
.+..-|+.++|+++-.. .. |+||+-.... -+-.| .....|+.|.. -|+++|+|+-+..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 45567777777777542 22 5556532211 12222 23446777754 3689999999999999
Q ss_pred EECCCCee---------------------eEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecC
Q 002511 84 YNYNTMDK---------------------VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH 141 (914)
Q Consensus 84 wd~~t~~~---------------------~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 141 (914)
||+.-... -..-.+|++.|.++.|+..- +.|++||.|.+|++||+.++ .+..++..|
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-~p~~s~~~~ 285 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-KPKSSITHH 285 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-Ccceehhhc
Confidence 99852110 11123688889999998754 57889999999999999999 888888999
Q ss_pred cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-Cc
Q 002511 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KS 220 (914)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 220 (914)
...|.++.|+|..+..|++|+.|++|.+.|.+........-...+.|-.+.|.|.... .++++..||+|+-+|+|. ++
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCC
Confidence 9999999999999999999999999999999853332222224577899999988765 788899999999999997 48
Q ss_pred eEEEecCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCCCce--eEEEeecCCccEEEEEEecCC-CEEEEEecCCeEE
Q 002511 221 CVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR--LENTLNYGLERVWAIGYMKSS-RRIVIGYDEGTIM 296 (914)
Q Consensus 221 ~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~ 296 (914)
++.+++.|..+|+++++++.-+ ++++++.|+.|++|++..-. .+..-....++..|.++.|+- -.+++|+..+.++
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEE
Confidence 9999999999999999998665 67889999999999976433 333333334567788888875 4677788888888
Q ss_pred EEc
Q 002511 297 VKI 299 (914)
Q Consensus 297 i~~ 299 (914)
+|.
T Consensus 445 vwd 447 (463)
T KOG0270|consen 445 VWD 447 (463)
T ss_pred Eee
Confidence 874
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=178.00 Aligned_cols=272 Identities=19% Similarity=0.283 Sum_probs=214.2
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCC------------ceeEEeee-cCCCeEEEEEe-------cCCCEEEEEEC
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQ------------TMAKSFEV-TELPVRSAKFV-------ARKQWVVAGAD 77 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~-~~~~v~~~~~s-------~~~~~l~~g~~ 77 (914)
...+.|||||..|++-+.|..+.+|++... ....+++. ....|...+|- |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999997531 11112222 23467777776 56788999999
Q ss_pred CCEEEEEECCCCeeeEEEec--CCC---CEEEEEEeCCCCEEEEEEcCCeEEEEEC-CCCceEEEE------eecCcccE
Q 002511 78 DMFIRVYNYNTMDKVKVFEA--HTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDW-EKGWMCTQI------FEGHSHYV 145 (914)
Q Consensus 78 dg~i~vwd~~t~~~~~~~~~--~~~---~i~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~------~~~~~~~i 145 (914)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|++|. ...|+++|+ +.++.+... ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998877753 333 346899999999988765 578999999 444322211 12346778
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc-CCeEEEEECCC-CceEE
Q 002511 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT-KSCVQ 223 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~ 223 (914)
.+++|+|.+...+++|+...++-||.-....++..+-+|.++|+.++|.++|+ .|++|.. +-.|..||++. +.++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn--~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN--KLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC--eecccccCCCeEEEEeehhccchhh
Confidence 99999998888999999999999999889999999999999999999999998 4777765 77899999986 45566
Q ss_pred EecCccc-ceE--EEEEeCCCCEEEEEECCCeEEEEeCCC-ceeEEEeecCCccEEEEEEecCCCEEEEEecC
Q 002511 224 TLEGHTH-NVS--AVCFHPELPIIITGSEDGTVRIWHATT-YRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 224 ~~~~~~~-~v~--~i~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (914)
.+..|.. .-. -....|++++|++|+.||.|++||+++ +..+..+..+...+..++++|--.++++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 6666654 222 345578999999999999999999998 66677788888899999999997777776543
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.6e-22 Score=220.45 Aligned_cols=280 Identities=17% Similarity=0.284 Sum_probs=222.1
Q ss_pred CEEEEEEcCCCC-EEEEEe----------cCCcEEEEeCCC--Cc----eeEEeeecCCCeEEEEEecCCCE----EEEE
Q 002511 17 RVKSVDLHPSEP-WILASL----------YSGTVCIWNYQS--QT----MAKSFEVTELPVRSAKFVARKQW----VVAG 75 (914)
Q Consensus 17 ~v~~~~~sp~~~-~la~~~----------~~g~v~iwd~~~--~~----~~~~~~~~~~~v~~~~~s~~~~~----l~~g 75 (914)
+--.++|+|+++ ++|+|. .+.++-||.+.- .. .+-.+. ...+.+.++|.+.|.. |+.|
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecc
Confidence 345689999997 666552 244566665432 22 222222 3457899999998876 8888
Q ss_pred ECCCEEEEEECCCC------eeeEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEEE-eecCcccEEE
Q 002511 76 ADDMFIRVYNYNTM------DKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQI-FEGHSHYVMQ 147 (914)
Q Consensus 76 ~~dg~i~vwd~~t~------~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~ 147 (914)
..||.|.+||...- ..+.+...|.+.|..+.|++.+. .|++|+.||.|.|||+.+....... -......|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 99999999998652 23556678999999999999765 8999999999999999875333222 1224567999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCC--CeeEEEEeeCCCcCEEEEEEcC---CeEEEEECCC-Cce
Q 002511 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK--GVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQT-KSC 221 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~-~~~ 221 (914)
++|+.+....|++++.+|.+.|||++..+++..+..+.. .+..+.|+|+... .+++++.| -.|.+||+|. ..+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCc
Confidence 999998889999999999999999999988888765554 4678999999876 45555443 3599999986 456
Q ss_pred EEEecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCC-EEEEEecCCeEEEE
Q 002511 222 VQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGYDEGTIMVK 298 (914)
Q Consensus 222 ~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~i~i~ 298 (914)
++++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+..+......+..+.|+|... .+++++-+|.|.|+
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 78888999999999999977 7999999999999999999999999998888999999999876 78889999999884
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=3.3e-20 Score=177.36 Aligned_cols=283 Identities=21% Similarity=0.397 Sum_probs=217.4
Q ss_pred hcccCCCCEEEEEEcC----CCC-EEEEEecCCcEEEEeCCCCceeEEee-----ecCCCeEEEEEecC----CCEEEEE
Q 002511 10 KLAQRSERVKSVDLHP----SEP-WILASLYSGTVCIWNYQSQTMAKSFE-----VTELPVRSAKFVAR----KQWVVAG 75 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp----~~~-~la~~~~~g~v~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~----~~~l~~g 75 (914)
....|..+|..++|++ +.. .+|+.+ ...+.||......-++.++ .|+.....++|+-+ ..++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 334 445544 5689999987654333333 25667788899865 4579999
Q ss_pred ECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEee---cCcccEEEEEEc
Q 002511 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFN 151 (914)
Q Consensus 76 ~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~ 151 (914)
+.-|.|+|.|+.+++....+.+|...|+.+.++|+. ++++++|.|..|++|++++. .+..++. +|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-eEEEEecccccccCcEEEEEEc
Confidence 999999999999999999999999999999999976 57889999999999999998 7777654 699999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCC---------------------------cE-EEecCCCCeeEEEEeeCCCcCEEE
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDP---------------------------NF-TLDAHQKGVNCVDYFTGGDKPYLI 203 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~-~~~~~~~~v~~~~~~~~~~~~~l~ 203 (914)
+ ++..+++++.|.+|++|++...+. .+ +..-|...|.|+.|.- + +++
T Consensus 191 ~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d--~il 265 (385)
T KOG1034|consen 191 L-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D--FIL 265 (385)
T ss_pred C-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h--hee
Confidence 9 888999999999999999973210 00 1234666777777753 3 789
Q ss_pred EEEcCCeEEEEEC-CCCce-------------EEEecCcccceEEE--EEeCCCCEEEEEECCCeEEEEeCCCceeE--E
Q 002511 204 TGSDDHTAKVWDY-QTKSC-------------VQTLEGHTHNVSAV--CFHPELPIIITGSEDGTVRIWHATTYRLE--N 265 (914)
Q Consensus 204 ~~~~dg~i~iwd~-~~~~~-------------~~~~~~~~~~v~~i--~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~ 265 (914)
+-+.++.|..|.. +-++. +..+.-....|+.+ +|.|-++.|+.|...|.|.+||++...+. .
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t 345 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT 345 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence 9899999999986 21111 22333334445554 45677889999999999999999876652 2
Q ss_pred Eee--cCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 266 TLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 266 ~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
++. .....|...+|+.||..|+..++|++|.-|.
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 222 2346799999999999999999999997763
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6e-18 Score=183.19 Aligned_cols=407 Identities=16% Similarity=0.225 Sum_probs=271.6
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCC---EEEEEECCCEEEEEECC
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ---WVVAGADDMFIRVYNYN 87 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~g~~dg~i~vwd~~ 87 (914)
+.|....-..-.||+|+++++... +..|.||...++.+++.+..|..++..+.+.|... ++++++.+|.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 344444444556899999888765 66899999999999999999999999999988654 67789999999999998
Q ss_pred CCeeeEEEecCCCC----------------------------------------------------------EEEEEEeC
Q 002511 88 TMDKVKVFEAHTDY----------------------------------------------------------IRCVAVHP 109 (914)
Q Consensus 88 t~~~~~~~~~~~~~----------------------------------------------------------i~~~~~s~ 109 (914)
.+..++++..+... -.++.+++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 88777666432110 11223333
Q ss_pred CCCEEEEEEcCCeEEEEECCCCceEEE---EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC----CCCcEEEe
Q 002511 110 TLPYVLSSSDDMLIKLWDWEKGWMCTQ---IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----PDPNFTLD 182 (914)
Q Consensus 110 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~ 182 (914)
.|.+..... +..+.+|+...+..... .-..|...+++.+++| .+++++++..||.|.+|.--. ......+.
T Consensus 171 ~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 171 SGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred CceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 333332222 23466666665421111 1124556689999999 899999999999999996433 22355677
Q ss_pred cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce
Q 002511 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~ 262 (914)
-|...|+++.|+++|. +|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|+.|.+....+..
T Consensus 249 WH~~~V~~L~fS~~G~--~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGA--YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ecccccceeEEecCCc--eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 8999999999999998 89999999999999999988 44455577899999999999999999999999999886655
Q ss_pred eEEEeecC-----------CccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecc
Q 002511 263 LENTLNYG-----------LERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVG 331 (914)
Q Consensus 263 ~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 331 (914)
...++.+. .+-.+.++++|..+.++..+..|.+.++..-.. ..+..+.+.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td----------------~~i~~~~v~--- 386 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD----------------STIYKLQVC--- 386 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc----------------ceeeeEEEE---
Confidence 44333322 233567888887788888888888888421111 111111110
Q ss_pred cceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc---------CC--cEEEEEeec----cc------ccccC
Q 002511 332 ADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG---------DG--EYIIYTALA----WR------NRSFG 390 (914)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~---------~~--~~~i~~~~~----~~------~~~~~ 390 (914)
..+..+|. ......++.++.+.+|.++++.. +| .+.+|.... |. +.+-.
T Consensus 387 -~~n~~~~~---------~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~ 456 (792)
T KOG1963|consen 387 -DENYSDGD---------VNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN 456 (792)
T ss_pred -eecccCCc---------ceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc
Confidence 01122333 12233556777788888888763 22 234453221 11 11212
Q ss_pred ceeEEEEe--cCCcEEEEec-CCeEEEeccCcc-------------------cceeeecCcccceeecCcEEEEEeCCeE
Q 002511 391 SALEFVWS--SDGEYAVRES-SSKIKIFSKNFQ-------------------EKRSVRPTFSAERIYGGTLLAMCSNDFI 448 (914)
Q Consensus 391 ~~~~~~~s--~~~~~l~~~~-~~~i~v~~~~~~-------------------~~~~~~~~~s~~~i~~g~~La~~~~~~i 448 (914)
.+...++. +....+++.+ ++.++||-.+.. ......++|+.| |.+|+++.+++|
T Consensus 457 ~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d----Gslla~s~~~~I 532 (792)
T KOG1963|consen 457 AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD----GSLLAVSFDDTI 532 (792)
T ss_pred eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC----CcEEEEecCCEE
Confidence 22233333 2332566664 899999975210 011111267777 999999999999
Q ss_pred EEEeccCC
Q 002511 449 CFYDWAEC 456 (914)
Q Consensus 449 ~~~d~~~~ 456 (914)
.+||..+.
T Consensus 533 tiwd~~~~ 540 (792)
T KOG1963|consen 533 TIWDYDTK 540 (792)
T ss_pred EEecCCCh
Confidence 99999883
No 164
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=6.7e-20 Score=190.04 Aligned_cols=276 Identities=20% Similarity=0.252 Sum_probs=203.3
Q ss_pred EEEcC---CCCEEEEEecCCcEEEEeCCCCce------eEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 21 VDLHP---SEPWILASLYSGTVCIWNYQSQTM------AKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 21 ~~~sp---~~~~la~~~~~g~v~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
..|++ ....||.+..+|.|.++|...... .+.+..|...|..+.|.|....|++++.|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55655 345789999999999999765432 244557999999999999778899999999999999999888
Q ss_pred eEE--EecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc------eEEE--------------------EeecCc
Q 002511 92 VKV--FEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGW------MCTQ--------------------IFEGHS 142 (914)
Q Consensus 92 ~~~--~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~------~~~~--------------------~~~~~~ 142 (914)
+.. +.+|.+.|.+++|.|+++ .+++|+.||.|.|||++-.. .+.. ....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 889999999999999775 57799999999999987431 0000 011122
Q ss_pred c----cEEEEEEccCCCCEEEEEeC-CCcEEEEECCCCCCcEEE--------ecC---CCCeeEEEEeeCCCcCEEEEEE
Q 002511 143 H----YVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPNFTL--------DAH---QKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 143 ~----~i~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~--------~~~---~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
. .|+.+.|- |...|++++. |+.|+|||++........ ..+ ..++.++.. +..+.+|++.+
T Consensus 215 ~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l--DssGt~L~AsC 290 (720)
T KOG0321|consen 215 NTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFASC 290 (720)
T ss_pred CceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe--cCCCCeEEEEe
Confidence 2 34445554 7889999888 999999999876543222 122 223445544 44444788888
Q ss_pred cCCeEEEEECCCC--ceEEEecCcccc--eEEEEEeCCCCEEEEEECCCeEEEEeCCCce-eEEEeecCCccEEEEEEec
Q 002511 207 DDHTAKVWDYQTK--SCVQTLEGHTHN--VSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 207 ~dg~i~iwd~~~~--~~~~~~~~~~~~--v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~~ 281 (914)
.|+.|++|++.+- .++..+.++... -..-..+|++.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|
T Consensus 291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc
Confidence 8999999999763 344444443221 1233578999999999999999999998766 3456677888899999988
Q ss_pred CC-CEEEEEecCCeEEEEcC
Q 002511 282 SS-RRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 282 ~~-~~l~~~~~dg~i~i~~~ 300 (914)
.. .-++++++|..+.+|..
T Consensus 371 S~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ccCCCceeeccCcceEEEec
Confidence 52 34666799999999854
No 165
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=7.5e-19 Score=173.08 Aligned_cols=317 Identities=18% Similarity=0.314 Sum_probs=209.4
Q ss_pred cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC---------cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEE
Q 002511 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (914)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (914)
..++.++.|.+.+.+.+++|+.|..|++|-+..+.+ ...+..|...|+++.|+|+|+ ++++|+++|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEE
Confidence 457899999986666999999999999998865432 234568999999999999998 899999999999
Q ss_pred EEECC--------C--------CceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEE
Q 002511 213 VWDYQ--------T--------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 276 (914)
Q Consensus 213 iwd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 276 (914)
+|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 99765 2 1234566789999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCC
Q 002511 277 IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYP 356 (914)
Q Consensus 277 i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 356 (914)
++|.|-++++++-+.|...+.......++..... . .+..... ...++-.......-.+...+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~--------~-~~m~~~~--------~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG--------L-DIMPAKA--------FNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeee--------e-eEeeecc--------cCCCCcceeeeeecCchhhhh
Confidence 9999999999998887744432111111110000 0 0000000 011111112222224445567
Q ss_pred ceEEECCCCCEEEEEc-----CCcEEEEEeeccccc-ccCceeEEEEecC-CcE-EEEecCCeEEEeccCcccceeeecC
Q 002511 357 QSLKHNPNGRFVVVCG-----DGEYIIYTALAWRNR-SFGSALEFVWSSD-GEY-AVRESSSKIKIFSKNFQEKRSVRPT 428 (914)
Q Consensus 357 ~~l~~s~~g~~lav~~-----~~~~~i~~~~~~~~~-~~~~~~~~~~s~~-~~~-l~~~~~~~i~v~~~~~~~~~~~~~~ 428 (914)
..++|+|||.+|++.. ++.+..........+ ...++..+ |. ++. +++... -| .|.+ +.......-
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l---p~~~k~~lavr~~-pV-y~el--rp~~~~~~~ 306 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL---PSPKKPALAVRFS-PV-YYEL--RPLSSEKFL 306 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec---CCCCcceEEEEee-ee-EEEe--ccccccccc
Confidence 7899999999888654 333322211111110 01111111 11 111 111111 01 1111 000000000
Q ss_pred c-ccceeecCcEEEEEeCCeEEEEeccCCcEEEEEE----cceeEEEEcCCCCEEEEEeCCeEEE
Q 002511 429 F-SAERIYGGTLLAMCSNDFICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDTSFYI 488 (914)
Q Consensus 429 ~-s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~~~~~~ 488 (914)
| -|- +-.+|+++.+.|++||.++..++.... ..++.++||+||..+++.+.|+.+-
T Consensus 307 ~~lpy----rlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 307 FVLPY----RLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred ccccc----ceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 1 122 567889999999999999998887766 4899999999999999999999874
No 166
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=5.3e-17 Score=182.89 Aligned_cols=286 Identities=28% Similarity=0.479 Sum_probs=232.2
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-eeEEeeecCC-CeEEEEE-ecCCC-EEEEEEC-CCEEEEE
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-MAKSFEVTEL-PVRSAKF-VARKQ-WVVAGAD-DMFIRVY 84 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~-~v~~~~~-s~~~~-~l~~g~~-dg~i~vw 84 (914)
.+..|...+.++.+++.+..++.++.++.+.+|+...+. ....+..+.. .+..+.+ ++++. .++..+. ++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999999999999999999999988886 6666766443 7788887 88887 5555445 8999999
Q ss_pred ECCC-CeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCC-EEEEE
Q 002511 85 NYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTN-TFASA 161 (914)
Q Consensus 85 d~~t-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-~l~~~ 161 (914)
+..+ ......+..|...|..+.|+|++..+++++. |+.+++|+...+ .....+.+|...+.+++|+| ++. .++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 9988 7888889999999999999999998888885 999999999985 66777777999999999998 665 55555
Q ss_pred eCCCcEEEEECCCCCCcE-EEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-EEEecCcccceEEEEEeC
Q 002511 162 SLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 162 ~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~ 239 (914)
+.|+.|++||...+.... .+..|.... ...|++++. ++++++.++.+++|+...... +..+..|...+.++.|+|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS--LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC--EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 999999999988776666 577777765 447888874 788999999999999987664 444467888999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCceeEEEee--cCCccEEEEEEecCCCEEEEE-ecCCeEEEEcC
Q 002511 240 ELPIIITGSEDGTVRIWHATTYRLENTLN--YGLERVWAIGYMKSSRRIVIG-YDEGTIMVKIG 300 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~-~~dg~i~i~~~ 300 (914)
++..+++++.|+.+.+|+..+........ .+...+..+.|.+++..++.+ ..++.+.+|..
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 88888889999999999998887666665 565678899993332456555 56677776543
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.9e-20 Score=183.96 Aligned_cols=264 Identities=17% Similarity=0.266 Sum_probs=205.9
Q ss_pred EEecCCcEEEEeCCCCceeEEeeecC--CCeEEEEEecCCCEEEEE--ECCCEEEEEECCC--CeeeEEEecCCCCEEEE
Q 002511 32 ASLYSGTVCIWNYQSQTMAKSFEVTE--LPVRSAKFVARKQWVVAG--ADDMFIRVYNYNT--MDKVKVFEAHTDYIRCV 105 (914)
Q Consensus 32 ~~~~~g~v~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~g--~~dg~i~vwd~~t--~~~~~~~~~~~~~i~~~ 105 (914)
+++....+++||+...+....+..|. ..+.++.|+.... |+++ +.|..+++|.-.. ++....-....+.-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 33445579999998776665555443 3488899987764 4444 4477899996432 11222212222344566
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC-
Q 002511 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH- 184 (914)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~- 184 (914)
+......++++|+..+.|+|||++.. .+.+.+.+|...|+++.++- ...++++++..|.|.+..+.++.....+...
T Consensus 86 ~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 86 ACASQSLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhhcceeeeccCcCceeeehhhHHH-HHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 66666689999999999999999965 88889999999999999998 6789999999999999999888777676544
Q ss_pred CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEe-cCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCCCce
Q 002511 185 QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 185 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (914)
...|.-+.|++.... +|.+++++|.|.+||.....++..+ +.|..+...|||+|... +|++.+.|..|.+||+...+
T Consensus 164 gqsvRll~ys~skr~-lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRF-LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred CCeEEEeecccccce-eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 345568899988765 8889999999999999877776544 56889999999999654 77888999999999999877
Q ss_pred eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
....+.+. .+..+++|+++|.+|++|+..|.++.+..
T Consensus 243 s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 243 STDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred ccceeeec-CCcceeeecCCceEEEeecCCceEEEEec
Confidence 77777655 68899999999999999999999988643
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=175.66 Aligned_cols=274 Identities=15% Similarity=0.206 Sum_probs=207.0
Q ss_pred CEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEec--CCCEEEEEECCCEEEEEECCCCeeeEEE--ecCC-CCE
Q 002511 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVA--RKQWVVAGADDMFIRVYNYNTMDKVKVF--EAHT-DYI 102 (914)
Q Consensus 28 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~vwd~~t~~~~~~~--~~~~-~~i 102 (914)
..+|++.++|.|++||..+++.+..|++++..++.++|.. ....+.+++.||.|++||+++......+ ..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999987 4667899999999999999987665544 3444 467
Q ss_pred EEEEEeCCCCEEEEEEc----CCeEEEEECCCCce-EEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC-
Q 002511 103 RCVAVHPTLPYVLSSSD----DMLIKLWDWEKGWM-CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD- 176 (914)
Q Consensus 103 ~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~- 176 (914)
.|++.+..++.+++|+. +-.|.+||++...+ +......|...|+++.|+|.++++|++|+.||-|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 78888777778887753 67899999998766 5566778999999999999999999999999999999997653
Q ss_pred --CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcc------------cceEEEEEeCCCC
Q 002511 177 --PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT------------HNVSAVCFHPELP 242 (914)
Q Consensus 177 --~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v~~i~~~~~~~ 242 (914)
.+...-.+...|.++.|...+-+ .|.+-+...+..+|++..+.+...+.... ..+...-...++.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk-rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK-RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc-eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 23333457778999999987733 38888889999999999887655443210 1121211122334
Q ss_pred EEEEEEC-CCeEEEEeCC---Cc---eeEEEeec-CCccEEEEEEecCCCEEEEEecCCeEEEEcCCC
Q 002511 243 IIITGSE-DGTVRIWHAT---TY---RLENTLNY-GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (914)
Q Consensus 243 ~l~~~~~-dg~v~iwd~~---~~---~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~ 302 (914)
.++.++. -|...++-+. ++ +.+..+.+ |..-|.++.|...+..+.+|+.||.+.+|....
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 4554443 4555555432 23 33444554 455688899998999999999999999996433
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-20 Score=193.11 Aligned_cols=264 Identities=21% Similarity=0.301 Sum_probs=201.5
Q ss_pred chhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC--------CceeEEeeecCCCeEEEEEecCCCEEEEEE
Q 002511 5 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS--------QTMAKSFEVTELPVRSAKFVARKQWVVAGA 76 (914)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 76 (914)
+.++.++..|.+.|+.++|+|..+.|++++.+|.+.+|+++. .+.+.+|.+|.+||.|++..+++..+++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 345557888999999999999999999999999999999932 256788999999999999999999999999
Q ss_pred CCCEEEEEECCC----------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEE
Q 002511 77 DDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM 146 (914)
Q Consensus 77 ~dg~i~vwd~~t----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~ 146 (914)
.||+|+.|++.. ......+.+|.+.|+.+++|+...+|++++.||++++|+......+........+...
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcc
Confidence 999999996531 1234567799999999999999999999999999999998776332222122233445
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec-------CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC
Q 002511 147 QVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA-------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 147 ~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
++.+-.......++...-+.-.++++........+.. ....++.+.++|..+ +.+++..|+.|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~--~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD--ITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC--eeEecccCCceeccccccc
Confidence 5555431222333333333333334333333333321 123466778888775 8999999999999999999
Q ss_pred ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC
Q 002511 220 SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 220 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (914)
..+.....|...++++++.|+|.+|++|+.||.+++|.+....+......|
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999999999999999999999998766665544433
No 170
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.8e-19 Score=169.83 Aligned_cols=384 Identities=14% Similarity=0.192 Sum_probs=239.2
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCCEEEEEECCCCeeeEEEecC
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKVKVFEAH 98 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~t~~~~~~~~~~ 98 (914)
-++|||+|+++|+.+.- .+.|-|..+-+..+.|.. -..|.-+.|..|..+++.+ ..++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999998754 788999888776665553 3467889999999887766 55889999999988888889888
Q ss_pred CCCEEEEEEeCCCCEEE-EEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC---C
Q 002511 99 TDYIRCVAVHPTLPYVL-SSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---S 174 (914)
Q Consensus 99 ~~~i~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~---~ 174 (914)
.+++.+++|||||+.|+ +...+-.|.+|.+.+. .... +.-.+..+..++|+| ++++.+.++.-...-.+.+. .
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~~~-~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KGYL-LPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccc-eeEE-ecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHH
Confidence 89999999999996655 6667899999999986 2222 222233468899999 88888887754222112221 1
Q ss_pred CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEE
Q 002511 175 PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (914)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 254 (914)
-.....+....-..+.+.|+|+|+ . +.+||.--.-.+.... ..-.+..++|+|.+++|++|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~---------laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--W---------LAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--E---------EEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhh
Confidence 122333444455567899999887 3 4456633222222222 234578899999999999999999999
Q ss_pred EEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe-cCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccc
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY-DEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (914)
+.+--+.+....+ +-.++ .|.+..+ +.....++.+.
T Consensus 236 vlnh~tWk~f~ef------------------lhl~s~~dp~~~~-----------------~~ke~~~~~ql-------- 272 (447)
T KOG4497|consen 236 VLNHFTWKPFGEF------------------LHLCSYHDPTLHL-----------------LEKETFSIVQL-------- 272 (447)
T ss_pred hhceeeeeehhhh------------------ccchhccCchhhh-----------------hhhhhcchhhh--------
Confidence 8775544443322 21111 1111000 00000000000
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEE------------EeecccccccCceeEEEEecCC
Q 002511 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIY------------TALAWRNRSFGSALEFVWSSDG 401 (914)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~------------~~~~~~~~~~~~~~~~~~s~~~ 401 (914)
...+++|.|..--.-.+ ...-.+| .....++...-.+--++||+|.
T Consensus 273 ---------------------~~~cLsf~p~~~~a~~~-~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds 330 (447)
T KOG4497|consen 273 ---------------------LHHCLSFTPTDLEAHIW-EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS 330 (447)
T ss_pred ---------------------cccccccCCCccccCcc-ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence 00112222211000000 0000011 1112223334456678899999
Q ss_pred cEEEEecC---CeEEEeccCccccee-------eec-CcccceeecCcEEEEEeCC-eEEEEeccCCcEEEEEE-c-cee
Q 002511 402 EYAVRESS---SKIKIFSKNFQEKRS-------VRP-TFSAERIYGGTLLAMCSND-FICFYDWAECRLIRRID-V-TVK 467 (914)
Q Consensus 402 ~~l~~~~~---~~i~v~~~~~~~~~~-------~~~-~~s~~~i~~g~~La~~~~~-~i~~~d~~~~~~i~~~~-~-~i~ 467 (914)
.|+++..| +.+-+||++...... ++. .+.|. ...|+++... .+++|...-...+..-. + .|.
T Consensus 331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~----~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~ 406 (447)
T KOG4497|consen 331 TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG----RPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQ 406 (447)
T ss_pred eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC----CceEEEEcCCceEEEEcCCCceEEecCCCCceee
Confidence 99988885 578899866432221 111 45665 6677777666 99999876655554433 2 799
Q ss_pred EEEEcCCCCEEEEEeCCeEEEE
Q 002511 468 NLYWADSGDLVAIASDTSFYIL 489 (914)
Q Consensus 468 ~v~~s~dg~~la~~~~~~~~~~ 489 (914)
.+.|..+|..++..++|.+.+-
T Consensus 407 ~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 407 KLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred eEEecCCCcEEEEEcCCceEEE
Confidence 9999999999999999987763
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=6e-19 Score=173.76 Aligned_cols=279 Identities=20% Similarity=0.271 Sum_probs=207.7
Q ss_pred CCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCCc---------eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 14 RSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQT---------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 14 h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
...+|.++.|+++.. .||+|+.|..|+||-+..+. ....+..|...|+++.|+|+|..|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999877 99999999999999876532 23346679999999999999999999999999999
Q ss_pred EECC--------C--------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEE
Q 002511 84 YNYN--------T--------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (914)
Q Consensus 84 wd~~--------t--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (914)
|-.. + ....+.+.+|...|..++|+|++.++++++-|..+++||+..+ .....+..|.+.+..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeeccccccccce
Confidence 9765 2 2234566789999999999999999999999999999999998 888999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe----------c---------C----CCCeeEEEEeeCCCcCEEEE
Q 002511 148 VTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD----------A---------H----QKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~---------~----~~~v~~~~~~~~~~~~~l~~ 204 (914)
++|.| -+.++++-+.|...+.+++...+.+.... . | ..-...++|+|+|. ++++
T Consensus 171 vawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~--llvt 247 (434)
T KOG1009|consen 171 VAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS--LLVT 247 (434)
T ss_pred eecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc--EEEc
Confidence 99999 78899998888877777764432221110 0 1 11234567888876 5655
Q ss_pred EEc----CC-----eEEEEECCC-CceEEEecCcccceEEEEEeC------------------CCCEEEEEECCCeEEEE
Q 002511 205 GSD----DH-----TAKVWDYQT-KSCVQTLEGHTHNVSAVCFHP------------------ELPIIITGSEDGTVRIW 256 (914)
Q Consensus 205 ~~~----dg-----~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~------------------~~~~l~~~~~dg~v~iw 256 (914)
... .+ ..++|+-.. .++...+.....+...+.++| -+-.++.++.+ .|++|
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvy 326 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVY 326 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEe
Confidence 432 12 234444322 233444444444444454443 22345556654 89999
Q ss_pred eCCCceeEEEe-ecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 257 HATTYRLENTL-NYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 257 d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
|..+..++... +.|-..++.++|+++|..+++.+.||...+
T Consensus 327 dtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 327 DTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred ccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99887765543 346678999999999999999999998876
No 172
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=5.7e-19 Score=166.12 Aligned_cols=244 Identities=20% Similarity=0.328 Sum_probs=195.1
Q ss_pred cccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC---CCEEEEEECCCEEEEEEC
Q 002511 11 LAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR---KQWVVAGADDMFIRVYNY 86 (914)
Q Consensus 11 l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~g~~dg~i~vwd~ 86 (914)
-.+|.-.|.++.|-| |...+.+++.|.+++|||..+-+....|+ .++.|.+-+|||- ..++|+|..+-.|++.|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 357888999999999 55567788889999999999988888887 6677999999984 457888888999999999
Q ss_pred CCCeeeEEEecCCCCEEEEEEeCCCCE-EEEEEcCCeEEEEECCCCceEEEE--------------eecCcccEEEEEEc
Q 002511 87 NTMDKVKVFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKGWMCTQI--------------FEGHSHYVMQVTFN 151 (914)
Q Consensus 87 ~t~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~--------------~~~~~~~i~~~~~~ 151 (914)
.+|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++...-+... -..|.+.+..++|+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 999999999999999999999998876 568999999999999854223332 23567889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCcEEEe---cCCCCe-eEEEE-eeCCCcCEEEEEEcCCeEEEEECCCCceEEEec
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQKGV-NCVDY-FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v-~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (914)
. ++.++++++.|..+++|+..+|.....-. .|...+ ..+.. +-+.+ .++---.++.+.++++-.+..+..+.
T Consensus 256 S-d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~--vfv~~p~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 256 S-DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSD--VFVLFPNDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred c-cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccc--eEEEEecCCeEEEEEccCceEEEeee
Confidence 8 89999999999999999998775432111 111110 11111 11222 34444456899999999999999999
Q ss_pred CcccceEEEEEeCCCCEEEEEECCCeEEEEeC
Q 002511 227 GHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (914)
Q Consensus 227 ~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (914)
.|...|.+..+.|+-+...+|..|+.|..|-.
T Consensus 333 ~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecCchhhhhccccCCccccccc
Confidence 99889999999999999999999999999976
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-20 Score=208.79 Aligned_cols=246 Identities=19% Similarity=0.304 Sum_probs=203.2
Q ss_pred CCCEEEEEEcCCCCE----EEEEecCCcEEEEeCCCC------ceeEEeeecCCCeEEEEEecCCC-EEEEEECCCEEEE
Q 002511 15 SERVKSVDLHPSEPW----ILASLYSGTVCIWNYQSQ------TMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~----la~~~~~g~v~iwd~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~v 83 (914)
..+-..++|.+.|.. ||.|+.||.|.+||...- ..+.+...|.++|+.+.|++.+. +||+|+++|.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457789999998775 888889999999997652 34566778999999999999765 9999999999999
Q ss_pred EECCCCeeeEEEe--cCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecCc--ccEEEEEEccCCCCEE
Q 002511 84 YNYNTMDKVKVFE--AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTF 158 (914)
Q Consensus 84 wd~~t~~~~~~~~--~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l 158 (914)
||++..+.-.... ...+.|.+++|+..- ..|++++.+|.+.|||++....++.. ..+. ..+..+.|+|++...+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l-s~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL-SDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc-ccCCCccceeeeeeCCCCceee
Confidence 9998755444332 245689999999854 45778899999999999987444433 3232 3477899999888888
Q ss_pred EEEeCCC---cEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEE
Q 002511 159 ASASLDR---TIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSA 234 (914)
Q Consensus 159 ~~~~~dg---~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 234 (914)
++++.|. .|.+||++.. .+.+.+.+|..+|.++.|++.+.. ++++++.|+.|.+|+..+++.+..+......+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~-lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPR-LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCch-hhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 8888765 5899999864 467778899999999999998755 8999999999999999999999999988889999
Q ss_pred EEEeCCCC-EEEEEECCCeEEEEeCCCce
Q 002511 235 VCFHPELP-IIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 235 i~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 262 (914)
+.|+|..+ .+++.+-||.|.|+.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 78888999999999987544
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.2e-17 Score=177.60 Aligned_cols=418 Identities=16% Similarity=0.218 Sum_probs=272.3
Q ss_pred chhhhhcccCCCCEEEEEEcCCCC---EEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEE----------------
Q 002511 5 LEIKRKLAQRSERVKSVDLHPSEP---WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKF---------------- 65 (914)
Q Consensus 5 ~~~~~~l~~h~~~v~~~~~sp~~~---~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~---------------- 65 (914)
.+..+.|.+|..+++.+.+.|... ++.+++.+|.|++||...+.+++++..+- ++..+.+
T Consensus 47 g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~ 125 (792)
T KOG1963|consen 47 GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVE 125 (792)
T ss_pred HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecc
Confidence 345678999999999999998654 66788899999999999988887776321 1222211
Q ss_pred -------------------------------------------ecCCCEEEEEECCCEEEEEECCCCeeeEE----EecC
Q 002511 66 -------------------------------------------VARKQWVVAGADDMFIRVYNYNTMDKVKV----FEAH 98 (914)
Q Consensus 66 -------------------------------------------s~~~~~l~~g~~dg~i~vwd~~t~~~~~~----~~~~ 98 (914)
++.|.+... ..+..+.+|+..++..... -..|
T Consensus 126 ~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 126 DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI-VHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred cceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE-EEeeeEEEEEecccceeeccchhhhhh
Confidence 111211111 1233456666655331111 1246
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC---CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 002511 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (914)
Q Consensus 99 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 175 (914)
.-.++|.++||+++++++|..||.|.+|.--. .....+.+.-|...|++++|++ ++.+|++|+..|.+.+|.+.++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCC
Confidence 66689999999999999999999999996433 2233455667888999999999 8999999999999999999998
Q ss_pred CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc-----------ccceEEEEEeCCCCEE
Q 002511 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-----------THNVSAVCFHPELPII 244 (914)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l 244 (914)
+ ..-+..-..+|..+.++|+++ +.+....|..|.+....+.....++.+. .+-.+.++++|.-+.+
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 8 334455678999999999988 6777888999999887654443333321 2336778999977778
Q ss_pred EEEECCCeEEEEeCCCceeEEEeec-----CC------ccEEEEEEecCCCEEEEEec--------CCeEEEEcCCCcce
Q 002511 245 ITGSEDGTVRIWHATTYRLENTLNY-----GL------ERVWAIGYMKSSRRIVIGYD--------EGTIMVKIGREEPV 305 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~-----~~------~~v~~i~~~~~~~~l~~~~~--------dg~i~i~~~~~~~~ 305 (914)
+-.+..|.|.+||+-+.+.+..+.. +. -.+++++.+..|+++++.-. +|.+.
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~--------- 431 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS--------- 431 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE---------
Confidence 8888999999999987765544321 11 23556666666777776532 11211
Q ss_pred eEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCC-EEEEE-cCCcEEEEEeec
Q 002511 306 ASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-FVVVC-GDGEYIIYTALA 383 (914)
Q Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-~lav~-~~~~~~i~~~~~ 383 (914)
..+|......+.+.+.... ..+.+ ...+..+..+|..+ ..+++ .+|.+.+|-...
T Consensus 432 -------LKFW~~n~~~kt~~L~T~I---~~PH~-------------~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 432 -------LKFWQYNPNSKTFILNTKI---NNPHG-------------NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred -------EEEEEEcCCcceeEEEEEE---ecCCC-------------ceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 2345555555444443321 12222 22333344444433 44444 599999997643
Q ss_pred cccc---------------ccCceeEEEEecCCcEEEEecCCeEEEeccCcc-cceeee-c-Ccccc-eee-----cCcE
Q 002511 384 WRNR---------------SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQ-EKRSVR-P-TFSAE-RIY-----GGTL 439 (914)
Q Consensus 384 ~~~~---------------~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~-~~~~~~-~-~~s~~-~i~-----~g~~ 439 (914)
.++. +..++..++|+.||..++.+.+++|.+||...+ ...... . .+-.. .++ ....
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA 568 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc
Confidence 3211 234678899999999999999999999996542 111100 0 11000 001 1223
Q ss_pred EEEEeCCeEEEEeccCCcEEE
Q 002511 440 LAMCSNDFICFYDWAECRLIR 460 (914)
Q Consensus 440 La~~~~~~i~~~d~~~~~~i~ 460 (914)
+..++...+.+|++-++.+.-
T Consensus 569 ~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 569 LVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred eeeccCceEehHhhhhhheec
Confidence 444555599999998887766
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=6.9e-19 Score=165.24 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=196.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEecC--------CcEEEEeCCCC---------ceeEEee-ecCCCeEEEEEecC
Q 002511 7 IKRKLAQRSERVKSVDLHPSEPWILASLYS--------GTVCIWNYQSQ---------TMAKSFE-VTELPVRSAKFVAR 68 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~~--------g~v~iwd~~~~---------~~~~~~~-~~~~~v~~~~~s~~ 68 (914)
+.+.|..|-+.|..++-+|..+.|++..++ -.+.||.+... +.+..+. .+-+.|.|+.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 346677899999999999976655554432 24789987642 2333333 34568999999999
Q ss_pred CCEEEEEECCCEEEEEECCCCee-eEEEe-----cCCCCEEEEEEeC--CCCEEEEEEcCCeEEEEECCCCceEEEEeec
Q 002511 69 KQWVVAGADDMFIRVYNYNTMDK-VKVFE-----AHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG 140 (914)
Q Consensus 69 ~~~l~~g~~dg~i~vwd~~t~~~-~~~~~-----~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 140 (914)
+..+++-. |..|.+|++..+.. +..+. .|....++-+|+| +|+.+++. .|+++..||+++......+-..
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 99999876 78899999987765 33332 3556788899999 66666654 5689999999988777777788
Q ss_pred CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC
Q 002511 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
|...|..+.|+|+...+|++|+.||.|++||.+.. .+++.+.+|..-|.++.|+|..+. ++++|+.|..|.+|...+-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq-LiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ-LILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce-EEEecCCCceeEEEecccc
Confidence 99999999999988889999999999999999865 478889999999999999998876 8999999999999964321
Q ss_pred -----------------------------ceEEEecCcccceEEEEEeCCCC-EEEEEECCCeEEEEeCC
Q 002511 220 -----------------------------SCVQTLEGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHAT 259 (914)
Q Consensus 220 -----------------------------~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~dg~v~iwd~~ 259 (914)
..+.++..|...|++++|+.-.+ ++++-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12346677899999999998777 56677899999886554
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=3.8e-19 Score=170.19 Aligned_cols=244 Identities=21% Similarity=0.274 Sum_probs=195.9
Q ss_pred cCCCCEEEEEEcCC----CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCC-CEEEEEECCCEEEEEECC
Q 002511 13 QRSERVKSVDLHPS----EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 13 ~h~~~v~~~~~sp~----~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~ 87 (914)
.|...-..++|+-+ .++||+|+.-|.|+|.|+.+++..+.+.+|...|+.+.|.|+. ++++++|.|..|++||++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36677788888763 4689999999999999999999999999999999999999976 678899999999999999
Q ss_pred CCeeeEEEe---cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce------------------------EEE---E
Q 002511 88 TMDKVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM------------------------CTQ---I 137 (914)
Q Consensus 88 t~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~~---~ 137 (914)
+..++..+. +|.+.|.++.|+++|.+|++++.|.+|++|++..... ... +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999999884 7999999999999999999999999999999873200 000 1
Q ss_pred eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC-CC-------------CcEEEecCCCCeeEEEEeeCCCcCEEE
Q 002511 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PD-------------PNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (914)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~-~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (914)
..-|..+|-|+.|- ++++++-+-++.|..|.... .+ ....+.-....+.-+.|.-+.-+.+|+
T Consensus 247 ~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 12466677777775 58899988999999998721 11 122334445667778887776666899
Q ss_pred EEEcCCeEEEEECCCCceE--EEe--cCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 204 TGSDDHTAKVWDYQTKSCV--QTL--EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 204 ~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
.|...|.|.+||++...+. .++ ......|...+|+.||.+|+....|++|.-||..
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999876542 112 1234568899999999999999999999999853
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2e-20 Score=199.07 Aligned_cols=282 Identities=18% Similarity=0.253 Sum_probs=231.2
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
+.+..+.|.+|-..|.|..|...|.++++|+.|..|+||..+++.+.....+|.+.|+.++.+.+.-++++++.|..|++
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEe-----ecCcccEEEEEEccCCCCEE
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~p~~~~~l 158 (914)
|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+-. ..... ......+.++.|.. .+..+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~-~~~~f 331 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFEN-NGDRF 331 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccc-ccccc
Confidence 9999999999999999999999999954 7789999999999821 11111 11224456666665 67789
Q ss_pred EEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEe
Q 002511 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 238 (914)
.+++.|+.-..|.+..-. .+...+..+..+.+.+ .+.+++-.+-.+++|++.+|...+.+.+|...+..+.++
T Consensus 332 ~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccccCCcccccchhhHhh------hhccceEEEecccccc-ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence 999999988877653211 1122222222222222 256777778889999999999999999999999999999
Q ss_pred CCCCE-EEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 239 PELPI-IITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 239 ~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
|-.+. ..+++.||...|||+-.|.+++....+.+.+....||++|+.++...+-|.+.|..
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 96654 45789999999999999988776666667888999999999999999999999854
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=161.23 Aligned_cols=267 Identities=23% Similarity=0.329 Sum_probs=200.6
Q ss_pred CEEEEEec----CCcEEEEeCCCCc---eeEEeeecCCCeEEEEEecCCCEE-EEEECC-------CEEEEEECCC----
Q 002511 28 PWILASLY----SGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWV-VAGADD-------MFIRVYNYNT---- 88 (914)
Q Consensus 28 ~~la~~~~----~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~d-------g~i~vwd~~t---- 88 (914)
-.+++|.. ++.|.+.++..+. ..+.|..|.+.|..++-+|..+.| +++..+ ..+.||.+..
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 34556543 6778888776542 224566688999999999966554 444331 2577998753
Q ss_pred -----CeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee-----cCcccEEEEEEcc-CCCC
Q 002511 89 -----MDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-----GHSHYVMQVTFNP-KDTN 156 (914)
Q Consensus 89 -----~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~p-~~~~ 156 (914)
.+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+......+. .+....++-+|+| .+++
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 22333443 4556899999999998888766 78899999998755333222 3566788999999 5677
Q ss_pred EEEEEeCCCcEEEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEE
Q 002511 157 TFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSA 234 (914)
Q Consensus 157 ~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~ 234 (914)
.+++. .|+++..||+++.+....+ ..|...|..+.|.|+... +|++|++||.|+|||.+. ..+++++.+|...|++
T Consensus 186 qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 186 QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 77765 5899999999988777666 468888999999998765 899999999999999986 5678999999999999
Q ss_pred EEEeCCC-CEEEEEECCCeEEEEeCCCc-----------------------------eeEEEeecCCccEEEEEEecCCC
Q 002511 235 VCFHPEL-PIIITGSEDGTVRIWHATTY-----------------------------RLENTLNYGLERVWAIGYMKSSR 284 (914)
Q Consensus 235 i~~~~~~-~~l~~~~~dg~v~iwd~~~~-----------------------------~~~~~~~~~~~~v~~i~~~~~~~ 284 (914)
+.|+|.. ++|++||.|..|.+|....- ..+.++..|...|++++||.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999944 58889999999999954311 12335667788999999998766
Q ss_pred E-EEEEecCCeEEE
Q 002511 285 R-IVIGYDEGTIMV 297 (914)
Q Consensus 285 ~-l~~~~~dg~i~i 297 (914)
+ +|+-+.||.++|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 5 556688888887
No 179
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.6e-18 Score=179.97 Aligned_cols=251 Identities=19% Similarity=0.291 Sum_probs=185.1
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEE--eeecCCCeEEEEEecCC-CEEEEEECCCEEEEEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS--FEVTELPVRSAKFVARK-QWVVAGADDMFIRVYN 85 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd 85 (914)
+....|.+.|..+.|-|-...|++++.|.++++||+.+.+++.. +.+|.+.|.+++|.|.. ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44567999999999999777889999999999999999888766 88999999999999965 5688999999999999
Q ss_pred CCCCe---------------------------eeEEEecCCCCEEE---EEEeCCCCEEEEEEc-CCeEEEEECCCCceE
Q 002511 86 YNTMD---------------------------KVKVFEAHTDYIRC---VAVHPTLPYVLSSSD-DMLIKLWDWEKGWMC 134 (914)
Q Consensus 86 ~~t~~---------------------------~~~~~~~~~~~i~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~ 134 (914)
+.-.. .+..-..+...|.+ +.+..|...|++++. |+.|++||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 84211 11112234555655 666678889998888 999999999875222
Q ss_pred EE-------EeecC---cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC--CcEEEecCCCCeeE--EEEeeCCCcC
Q 002511 135 TQ-------IFEGH---SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD--PNFTLDAHQKGVNC--VDYFTGGDKP 200 (914)
Q Consensus 135 ~~-------~~~~~---~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~--~~~~~~~~~~ 200 (914)
.. .+..| ...+.++.... .|.+|++.+.|+.|++|++.+-. ++..+.++...-.. -..+|++.
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-- 330 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-- 330 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--
Confidence 11 11122 33466777766 56676666679999999997642 33444433322222 23455554
Q ss_pred EEEEEEcCCeEEEEECCCCc-eEEEecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCce
Q 002511 201 YLITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~ 262 (914)
++++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-+++++.|..+++|++.++-
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 89999999999999998754 456677899999999998843 346777999999999986553
No 180
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.3e-18 Score=165.38 Aligned_cols=294 Identities=11% Similarity=0.150 Sum_probs=224.9
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC------CceeEEee-ecCCCeEEEEEecCCCEEEEEECCC
Q 002511 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQS------QTMAKSFE-VTELPVRSAKFVARKQWVVAGADDM 79 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg 79 (914)
.++.+.+|.+.|.++.||.+++||++|+.|..+++|++.. .+.+.... .|...|.|++|.....++++|..++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3556789999999999999999999999999999999753 23444333 3568899999999999999999999
Q ss_pred EEEEEECCCCeeeEEEec--CCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE--EeecCcccEEEEEEccCCC
Q 002511 80 FIRVYNYNTMDKVKVFEA--HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDT 155 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~~ 155 (914)
+|...|+++.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+....... ..........++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999888777652 234899999999999999999999999999986532222 2223445678889999889
Q ss_pred CEEEEEeCCCcEEEEECCCCCC-cEEEe---cC---CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-EEEecC
Q 002511 156 NTFASASLDRTIKIWNLGSPDP-NFTLD---AH---QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG 227 (914)
Q Consensus 156 ~~l~~~~~dg~i~vwd~~~~~~-~~~~~---~~---~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~ 227 (914)
.+|++.+..+.+-+||.+.... +.... +. ...-..+.|+|+|+. +++.-....-.+||+.+..+ +..+.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q--~msiRR~~~P~~~D~~S~R~~V~k~D- 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ--FMSIRRGKCPLYFDFISQRCFVLKSD- 284 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe--ehhhhccCCCEEeeeecccceeEecc-
Confidence 9999999999999999986542 22111 11 122356789999884 66655555566788876544 33333
Q ss_pred cc-------cceEEEEEeCCCCEEEEEECCCeEEEEeCCC----------c-------------eeEEEeecCCccEEEE
Q 002511 228 HT-------HNVSAVCFHPELPIIITGSEDGTVRIWHATT----------Y-------------RLENTLNYGLERVWAI 277 (914)
Q Consensus 228 ~~-------~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~----------~-------------~~~~~~~~~~~~v~~i 277 (914)
|. ..+.+++|..+. .+++|+.+-.|++|.+.. | +....+.+|..-+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 32 236678888775 499999999999998641 1 1234677888888999
Q ss_pred EEecCCCEEEEEecCCeEEEEcCCCcc
Q 002511 278 GYMKSSRRIVIGYDEGTIMVKIGREEP 304 (914)
Q Consensus 278 ~~~~~~~~l~~~~~dg~i~i~~~~~~~ 304 (914)
.|+|....|++.+-...+.+|.....|
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred eecCCcceEeccchhhheeccccccCC
Confidence 999999999999999999999766555
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=8.8e-18 Score=178.93 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=98.5
Q ss_pred eeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 002511 647 ELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKN 726 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~ 726 (914)
....-+|+.++|-++|++..+...+-.||+++++.|++-.|.+.|.|++-+..+++|+.-.+-.+.++.++-++...++.
T Consensus 946 rI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred eeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence 45567899999999999999999999999999999999999999999999999999999988888888777776554444
Q ss_pred hHHHHHHHHcC-CHHHHHHHHHHCCCchHHHHHHHhc
Q 002511 727 NVAFLCLFMLG-KLEDCLQLLVESNRIPEAALMARSY 762 (914)
Q Consensus 727 ~~a~~~~~~~g-~~~~a~~l~~~~~~~~~A~~~a~~~ 762 (914)
.|...|..+| .+++|+.||.++|.+.+|++||=..
T Consensus 1026 -~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 1026 -SAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -HHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhh
Confidence 4455566666 9999999999999999999998543
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.3e-18 Score=184.31 Aligned_cols=288 Identities=18% Similarity=0.296 Sum_probs=219.3
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeec---CCCeEEEEEec--CCCEEEEEECCCEEEEEE
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT---ELPVRSAKFVA--RKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~g~~dg~i~vwd 85 (914)
..+....-..+.|||-.+.++++...-.|+|||.+.++....|..+ ...|+.+.+.. |..++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3344456778999999999999988889999999999888877754 45788998876 456899999999999996
Q ss_pred C-CCC----eeeEEEec-------CCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccC
Q 002511 86 Y-NTM----DKVKVFEA-------HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (914)
Q Consensus 86 ~-~t~----~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (914)
- .++ +.+....+ ..+.=.-+.|.....+|+++++-..|+|||......+..+..+....|+++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 3 222 22322221 11111346788877788888888999999999875555565666677888877665
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCC---cEEEecCCCC--eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE--EEec
Q 002511 154 DTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKG--VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLE 226 (914)
Q Consensus 154 ~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~ 226 (914)
.++.++.|..||.|++||.+...+ +...+.|... |..+.+.+.|-+ -|++|+.+|.|++||++..... .++.
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceee
Confidence 689999999999999999987543 5556677766 889999887765 6999999999999999974222 2222
Q ss_pred Cc---ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec-------CCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 227 GH---THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------GLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 227 ~~---~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
.| .+.++++..|++.+++++|+. +.|+||++. |+.+..+.. ..+.+.+++|+|-.-.+|+|+.|.+|.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 22 235899999999999999998 899999976 554444433 235689999999999999999999999
Q ss_pred EEcCC
Q 002511 297 VKIGR 301 (914)
Q Consensus 297 i~~~~ 301 (914)
++...
T Consensus 1377 iYs~~ 1381 (1387)
T KOG1517|consen 1377 IYSCE 1381 (1387)
T ss_pred EeecC
Confidence 86433
No 183
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=2.4e-18 Score=177.68 Aligned_cols=148 Identities=22% Similarity=0.322 Sum_probs=122.2
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEECCCC-------CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSP-------DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
.|+.+.|+|-|...|++++.||.|++|.+..+ ++...+..|...|+++.|+|-... .|++++.|.+|++||+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAad-vLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAAD-VLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhh-Hhhhhhccceeeeeeh
Confidence 47889999999999999999999999998543 456678899999999999997654 8999999999999999
Q ss_pred CCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCcee-EEEeecC-CccEEEEEEecCCCEEEEEecC
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRL-ENTLNYG-LERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d 292 (914)
++++....+.+|.+.|.+++|||+|+.+++.+.||+|++|..+.+.. +..-.+. ..+--.+.|.-+|+++++.+-|
T Consensus 708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 99999999999999999999999999999999999999999876653 3222222 1233456777778777765543
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.4e-17 Score=181.21 Aligned_cols=261 Identities=16% Similarity=0.192 Sum_probs=197.9
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecC-CCEEEEEECCCEEEEEECCCCee--eEE----EecCCCCEEEEEEeC
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-KQWVVAGADDMFIRVYNYNTMDK--VKV----FEAHTDYIRCVAVHP 109 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~vwd~~t~~~--~~~----~~~~~~~i~~~~~s~ 109 (914)
+.+.||++.........-.....|+|+.|+|. ...++.|+.+|+|.+||+..+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999876332222236678999999995 56777788899999999987655 222 246899999999987
Q ss_pred CCC--EEEEEEcCCeEEEEECCCCceEEEEe-----e------cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC
Q 002511 110 TLP--YVLSSSDDMLIKLWDWEKGWMCTQIF-----E------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (914)
Q Consensus 110 ~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-----~------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 176 (914)
+-. -+++++.||.|+.|+++.-..+.... . .....++++.|.|.+.+.|++|+.+|.|..-+..+.+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 544 49999999999999887532211111 1 1234588999999899999999999999874433322
Q ss_pred --------CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC-CCceEEEecCcccceEEEEEeCCCC-EEEE
Q 002511 177 --------PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTHNVSAVCFHPELP-IIIT 246 (914)
Q Consensus 177 --------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 246 (914)
....+..|.++|.++.++|-+.. .+++++ |-+++||... ...++..+..+...+++++|||-.+ .+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 23355678899999999999886 444444 9999999987 6677777777788899999999776 6667
Q ss_pred EECCCeEEEEeCCCc--eeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 247 GSEDGTVRIWHATTY--RLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 247 ~~~dg~v~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
+..||.|.+||+... .+..+..........+.|++.|+.|++|...|.+.++.
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 778999999998643 34455555556678889999999999999999999853
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=9e-19 Score=162.51 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=206.7
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee-ecCCCeEEEEEecCCCEEEEEECCCEEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (914)
+....|++|.+.|+++.|..++. |.+|...|.|++|++++......+. .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 44556779999999999999886 8899999999999999998888888 56788999999998 457888899999999
Q ss_pred ECCCCeeeEEEecCCCCEEEEEEeC-----CCC----EEEEEEcCC-eEEEEECCCCceEEEEe----ecCcccEEEEEE
Q 002511 85 NYNTMDKVKVFEAHTDYIRCVAVHP-----TLP----YVLSSSDDM-LIKLWDWEKGWMCTQIF----EGHSHYVMQVTF 150 (914)
Q Consensus 85 d~~t~~~~~~~~~~~~~i~~~~~s~-----~~~----~l~~~~~dg-~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~ 150 (914)
++.-+..+.. |+-.++++.|.+ .++ .++.-+... .+.+-|.... ...++. .+..+.+++..|
T Consensus 83 ~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~-tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 83 TIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT-TQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc-ceeEccCchhccccCceeeeec
Confidence 9976544333 223334444433 211 111111100 0111121111 111111 123466788776
Q ss_pred ccCCCC--EEEEEeCCCcEEEEECCCCCCc----------EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 151 NPKDTN--TFASASLDRTIKIWNLGSPDPN----------FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 151 ~p~~~~--~l~~~~~dg~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
....+. +++.|.++|.+.+||+.++..+ .....|..+|.++.+.+..+ .=++|+.+..+..|+++.
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~--rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD--RGISGGADDKLVMYSLNH 236 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc--CCcCCCccccceeeeecc
Confidence 543333 4677889999999999987433 33356889999999986554 356777778888888763
Q ss_pred --Cce--EEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCe
Q 002511 219 --KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (914)
Q Consensus 219 --~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (914)
+.+ ...+....-.|..+.+-||++++++++.|+.||+|+.++.+++..+..|...|.+++|+|+...+|.++.|++
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 222 1222223445889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 002511 295 IMVKI 299 (914)
Q Consensus 295 i~i~~ 299 (914)
|.+|.
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99983
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-16 Score=144.85 Aligned_cols=268 Identities=16% Similarity=0.285 Sum_probs=194.6
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCC----------CceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQS----------QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
..|.+-+|+|.+++|++|...|.|.++.+.+ ...+..+..|+++|..++|. ..+|++|++ |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 3467778999999999999999999998754 22344557899999999998 346777654 9999998
Q ss_pred CCCCee------eEEE--ecCC-----CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEcc
Q 002511 86 YNTMDK------VKVF--EAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP 152 (914)
Q Consensus 86 ~~t~~~------~~~~--~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p 152 (914)
++.... +... ..|. ..|+++...|..+.+++++.|+.++-||++++ .+...+++|+.+|.++.--.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-EEEEEEcCCcceeeeeeecc
Confidence 764322 1111 1122 35889999998888888889999999999999 89999999999999998754
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCC----------CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE
Q 002511 153 KDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQK----------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (914)
Q Consensus 153 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (914)
....+++|+.||++++||.++++.+..+...+. -|.+++ .+.+ ++++|+ ...+.+|.++..++.
T Consensus 167 -~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~ed--WlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 167 -ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNED--WLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred -cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCc--eEEecC-CCceeEEeccCCCce
Confidence 567899999999999999999988877643221 133333 2333 666655 567999999998887
Q ss_pred EEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecC-CCEEEEEecCCeEEE
Q 002511 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS-SRRIVIGYDEGTIMV 297 (914)
Q Consensus 223 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~i~i 297 (914)
..+. -..++..+.|..+ .+++++..+.|.-|.+. |.+...........++.+|+.. -+++.+++....+.+
T Consensus 241 ~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 241 CVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 7776 4456777788765 57888888899999865 5554444444444555555433 234444555555544
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=8.9e-18 Score=160.38 Aligned_cols=233 Identities=21% Similarity=0.327 Sum_probs=187.9
Q ss_pred CCCEEEEEEc-------CCCCEEEEEecCCcEEEEeCCCCceeEEeeecC-----CCeEEEEEecCCCEEEEEECCCEEE
Q 002511 15 SERVKSVDLH-------PSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-----LPVRSAKFVARKQWVVAGADDMFIR 82 (914)
Q Consensus 15 ~~~v~~~~~s-------p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~g~~dg~i~ 82 (914)
.+.|...+|- |+..++|+.+.+.-|++||.-+|+...++..-+ ..-.+++|+|||.+|++|. ...|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence 3457777774 677889999999999999999999888877532 2457899999999999874 56899
Q ss_pred EEEC-CCCeeeEEE-------ecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccC
Q 002511 83 VYNY-NTMDKVKVF-------EAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK 153 (914)
Q Consensus 83 vwd~-~t~~~~~~~-------~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~ 153 (914)
+||+ +.|..-..+ .+..+-|.|++|+|... .++.|+....+-||..... .+...+.+|.+.|+.+.|.+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~e- 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCE- 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEecc-
Confidence 9999 555432221 13467899999999654 8899999999999998877 77788889999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCC-CCcEEEecCCC-CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcc
Q 002511 154 DTNTFASASL-DRTIKIWNLGSP-DPNFTLDAHQK-GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHT 229 (914)
Q Consensus 154 ~~~~l~~~~~-dg~i~vwd~~~~-~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 229 (914)
+++.|++|.. |-.|..||++.. .++..+..|.. .-..|-|.-+..+.+|++|+.+|.|++||+++ +..+..+..+.
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 8888888876 778999999864 46666666655 33456666666666999999999999999998 77788888899
Q ss_pred cceEEEEEeCCCCEEEEEECC
Q 002511 230 HNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 230 ~~v~~i~~~~~~~~l~~~~~d 250 (914)
..+..++++|--+++++++..
T Consensus 341 d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccccceecCcccceeeeccCc
Confidence 999999999998888887743
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4e-18 Score=175.04 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=193.7
Q ss_pred EeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC--------CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeE
Q 002511 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN--------TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (914)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~--------t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 123 (914)
++..|...|+.+.|.|....|++++.||.|.+|+++ .-+++.+|.+|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 556688899999999999999999999999999993 235678899999999999999999999999999999
Q ss_pred EEEECCCC---------ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec--CCCCeeEEE
Q 002511 124 KLWDWEKG---------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA--HQKGVNCVD 192 (914)
Q Consensus 124 ~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~ 192 (914)
+.|++... ......+.||...++.+++++ ..+.|++++.||+++.|+.....+ .++.. ..+...+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99965421 245567889999999999999 778899999999999999877665 33322 223334555
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc-------ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEE
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-------THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (914)
+-.... .+.++...-+.-.+++......+..+... ...+..+.++|.+.+.+++..|+.|+++|..++.++.
T Consensus 447 ~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 433221 12333333444445555555444444321 2346788999999999999999999999999999999
Q ss_pred EeecCCccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 266 TLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 266 ~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
....|...++++++.|+|.+|++++.||.+++|..
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 99999999999999999999999999999999743
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=172.07 Aligned_cols=291 Identities=28% Similarity=0.480 Sum_probs=233.8
Q ss_pred hhhhhcccCCCCEEEEEEcCCCCEEEEEec-CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCC-EEEEEECCCEEEE
Q 002511 6 EIKRKLAQRSERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRV 83 (914)
Q Consensus 6 ~~~~~l~~h~~~v~~~~~sp~~~~la~~~~-~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~v 83 (914)
.....+..|...|.+++|+|++.++++++. ++.+++|+..++..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 345667889999999999999998888875 99999999998888899999999999999999998 4555589999999
Q ss_pred EECCCCeeeE-EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 84 YNYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 84 wd~~t~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
||..++..+. .+..|.... ...|+|++.++++++.|+.+++|+..........+..|...+.++.|+| ++..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCCEEEEee
Confidence 9998888887 688888875 4489999988999999999999999976442333467888999999999 778888899
Q ss_pred CCCcEEEEECCCCCCcEEEe--cCCCCeeEEEEeeCCCcCEEEEE-EcCCeEEEEECCCCceEEEecCcccceEEEEEeC
Q 002511 163 LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITG-SDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 239 (914)
.|+.+.+|+..+........ .|...+..+.+ +.. ...++.+ ..++.+.+|+............. ..+..+.+++
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 380 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD-GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP 380 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC-CCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC
Confidence 99999999988877666655 67777889988 532 2245555 67889999999877733333322 2288899988
Q ss_pred CCCEEEE-EECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCC
Q 002511 240 ELPIIIT-GSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGRE 302 (914)
Q Consensus 240 ~~~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~ 302 (914)
...+.. +..++.+.+|+................+....+++++..++.++.++.+.+|....
T Consensus 381 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 381 -DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 544444 68899999999988777665554436888999999999999999999999875443
No 190
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4e-14 Score=150.56 Aligned_cols=366 Identities=16% Similarity=0.212 Sum_probs=253.7
Q ss_pred CcchhhhhcccCCCCEEEEEEcCC------------CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC--
Q 002511 3 LRLEIKRKLAQRSERVKSVDLHPS------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-- 68 (914)
Q Consensus 3 ~~~~~~~~l~~h~~~v~~~~~sp~------------~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-- 68 (914)
+.++....+.-|...|+.+.|.|- ...||++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 456778888999999999999872 126778888999999999999988899999999999999873
Q ss_pred -C-CEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeC-CCCEEEEEEcCCeEEEEECCCC------ceEEEEee
Q 002511 69 -K-QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWEKG------WMCTQIFE 139 (914)
Q Consensus 69 -~-~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~ 139 (914)
. ..|++-.....|.+||..||++............|+.+.| |.+.+..-+..|.+.+-+.-.. .+..++..
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3 4666667778999999999999998887777788899998 4556666666777777654311 12233322
Q ss_pred cCcc-------------------------cEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEe
Q 002511 140 GHSH-------------------------YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYF 194 (914)
Q Consensus 140 ~~~~-------------------------~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 194 (914)
.|.. ....++|+|.-.+.++. ...+.+.++|+.-..++....-..+.+..+.|.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 3221 12235678844454444 456889999998888888777777888899999
Q ss_pred eCCCcCEEEEEEcCCeEEEEECCC----------------CceEEE----------------------------------
Q 002511 195 TGGDKPYLITGSDDHTAKVWDYQT----------------KSCVQT---------------------------------- 224 (914)
Q Consensus 195 ~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~---------------------------------- 224 (914)
|++++..|++...||.+.+|-.+. +..+..
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 999988999999999999996432 111110
Q ss_pred -e----------------------------------------cCcccceEEEEEe-----------CCC-------CEEE
Q 002511 225 -L----------------------------------------EGHTHNVSAVCFH-----------PEL-------PIII 245 (914)
Q Consensus 225 -~----------------------------------------~~~~~~v~~i~~~-----------~~~-------~~l~ 245 (914)
+ .+|....++.... |.+ ++++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0 0122222222221 111 3788
Q ss_pred EEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEE
Q 002511 246 TGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTV 325 (914)
Q Consensus 246 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (914)
.|...|+|.++|+.++.....+..|.+.|.++.|.....++-.++..-.-. .|. -.+++.+.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~--------------sg~----vrN~l~vt 503 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSA--------------SGG----VRNDLVVT 503 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecccccc--------------ccc----eeeeEEEE
Confidence 999999999999999999999999999999999987766655554321100 000 01222222
Q ss_pred EeeecccceeccCCceeeeeeeec-CCcccCCceEEECCCCCEEEEEc-CCcEEEEEeeccc-----ccccCceeEEEEe
Q 002511 326 NIKSVGADYEVTDGERLPLAVKEL-GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWS 398 (914)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s 398 (914)
. +.+|....+ +.+ +..+..|+.+..|..|++|++.- +.-+.+|+.+..+ .+.+-.++.+.|+
T Consensus 504 d---------LrtGlsk~f--R~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 504 D---------LRTGLSKRF--RGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred E---------ccccccccc--ccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 2 333332222 211 44556788999999999999987 7778888876543 3344557888888
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=1.8e-16 Score=149.40 Aligned_cols=273 Identities=15% Similarity=0.223 Sum_probs=200.2
Q ss_pred CEEEEEEcC---CCCEEEEEec----CCcEEEEeCC--CCceeEEe-eecCCCeEEEEEecCCC-----EEEEEECCCEE
Q 002511 17 RVKSVDLHP---SEPWILASLY----SGTVCIWNYQ--SQTMAKSF-EVTELPVRSAKFVARKQ-----WVVAGADDMFI 81 (914)
Q Consensus 17 ~v~~~~~sp---~~~~la~~~~----~g~v~iwd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~-----~l~~g~~dg~i 81 (914)
.+.++.||. .+-+||.|+. ++.|.|-.+. +++.+..- -.|.-|++.+.|.|+.. +||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 478889984 2347888875 5667776543 44443322 13788999999999863 556544 479
Q ss_pred EEEECCCCee----eEEE-----ecCCCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCCc--eEEEEeecCcccEEEEE
Q 002511 82 RVYNYNTMDK----VKVF-----EAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGW--MCTQIFEGHSHYVMQVT 149 (914)
Q Consensus 82 ~vwd~~t~~~----~~~~-----~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~ 149 (914)
++|.+...+. ...+ ..+..++++..|+.- -++|.+++-|-+..|||++++. .....+..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9998873211 1111 245678999999984 4577889999999999999862 35666778999999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec---CCCCeeEEEEeeCCCcCEEEEEEc-CCeEEEEECCC-CceEEE
Q 002511 150 FNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA---HQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT-KSCVQT 224 (914)
Q Consensus 150 ~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~ 224 (914)
|...+.+.|++.+.||.+++||++.......+.. ...+...++|++.... ++++-.. ...|.|.|++. ..++..
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHhhhhcCCceEEEEEecCCCcceeh
Confidence 9986778999999999999999998665444322 2456677888776543 6666554 46799999986 457889
Q ss_pred ecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCcee------EEEeecCCccEEEEEEec-CCCEEEEEecCC
Q 002511 225 LEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRL------ENTLNYGLERVWAIGYMK-SSRRIVIGYDEG 293 (914)
Q Consensus 225 ~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~dg 293 (914)
+++|...|..++|.|.. ..|++++.|..+.+||+...-. +..+. ..+.|..+.|++ .+..+++++...
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence 99999999999999954 5899999999999999875322 22222 346799999995 466787776543
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.3e-17 Score=165.47 Aligned_cols=213 Identities=16% Similarity=0.277 Sum_probs=162.6
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee-ecCCCeEEEEEec--CCCEEEEEECCCE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVA--RKQWVVAGADDMF 80 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~g~~dg~ 80 (914)
++.+...|.||++.|.|++|+.+|.+|++|+.|-.+.|||.-..++++.+. +|...|.++.|-| +...+++|..|..
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 466778899999999999999999999999999999999998888877765 6999999999999 4567889999999
Q ss_pred EEEEECCCC----------eeeEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeec---------
Q 002511 81 IRVYNYNTM----------DKVKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEG--------- 140 (914)
Q Consensus 81 i~vwd~~t~----------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------- 140 (914)
|+++|+... .....+..|...|..++..|++ ..+.+++.||+|+-+|++....+......
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999999742 2344566899999999999999 56889999999999999975333222111
Q ss_pred CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC------------------CcEEE-ecCC-----------CCeeE
Q 002511 141 HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD------------------PNFTL-DAHQ-----------KGVNC 190 (914)
Q Consensus 141 ~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~------------------~~~~~-~~~~-----------~~v~~ 190 (914)
.--...|+..+|.+..+|++|+.|--.++||.+... ++.-+ .+|- ..++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 113467899999999999999999999999943210 01111 1111 12456
Q ss_pred EEEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 191 VDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
+.|+|+|.. |++.-..-.|+++|+..
T Consensus 279 vtfnpNGtE--lLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 279 VTFNPNGTE--LLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EEECCCCcE--EEEeeCCeEEEEEeecC
Confidence 778888875 44444445788888653
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4e-16 Score=143.17 Aligned_cols=227 Identities=20% Similarity=0.285 Sum_probs=168.3
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCC----------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNT----------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
.|..-+|+|.+++|++|..+|.|.+..+++ ..++..+++|.++|..++|+. .+|++|+. |.|+-|.+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeee
Confidence 355668999999999999999999998863 233455689999999999993 35666654 99999988
Q ss_pred CCCce---EEEE----eec-----CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeC
Q 002511 129 EKGWM---CTQI----FEG-----HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG 196 (914)
Q Consensus 129 ~~~~~---~~~~----~~~-----~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 196 (914)
+.... +... ..- .-..|.++...| ..+.+++++.|+.++.||+.+++....+++|...+.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 75321 1111 111 124588999999 4555666668999999999999999999999999999987333
Q ss_pred CCcCEEEEEEcCCeEEEEECCCCceEEEecCcc----------cceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEE
Q 002511 197 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT----------HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENT 266 (914)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (914)
.. .+++|+.||++++||+++++++..+.... ..|-+++.+ ..++++|+ ...+.+|+++..+...+
T Consensus 168 ~~--qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 168 NG--QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred Cc--ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEE
Confidence 22 59999999999999999999988775322 224455544 45777766 55899999999988888
Q ss_pred eecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 267 LNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 267 ~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+..+ .++..+.|..+ .+++++....+.-
T Consensus 243 fpip-a~v~~v~F~~d--~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 243 FPIP-ARVHLVDFVDD--CVLIGGEGNHVQS 270 (325)
T ss_pred Eecc-cceeEeeeecc--eEEEeccccceee
Confidence 8766 67888888654 4555554444443
No 194
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.75 E-value=8.6e-12 Score=147.28 Aligned_cols=545 Identities=13% Similarity=0.165 Sum_probs=301.0
Q ss_pred CCEEEEEEcCCCCEEEEEecCC----cEEEEeCCCCc---eeEEee-----ecCCCeEEEEEecCCCEEEEEECCCEEEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSG----TVCIWNYQSQT---MAKSFE-----VTELPVRSAKFVARKQWVVAGADDMFIRV 83 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g----~v~iwd~~~~~---~~~~~~-----~~~~~v~~~~~s~~~~~l~~g~~dg~i~v 83 (914)
..+...+|.+....+.++.... .|.+-...... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3678888888776555443322 23444333222 222232 23467999999999999999999999999
Q ss_pred E----ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC---------------------c-eEEEE
Q 002511 84 Y----NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---------------------W-MCTQI 137 (914)
Q Consensus 84 w----d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------------------~-~~~~~ 137 (914)
. +..+. .+.....-...|.+++||||+..|+..+.+|++.+.+-.=. | +....
T Consensus 102 ~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 55442 33333444678999999999999999999999888752100 0 00000
Q ss_pred eec------------------------CcccEEEEEEccCCCCEEEEEeC---C---CcEEEEECCCCCCcEEEecCCCC
Q 002511 138 FEG------------------------HSHYVMQVTFNPKDTNTFASASL---D---RTIKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 138 ~~~------------------------~~~~i~~~~~~p~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|.| ....-..++|-. ||.+|++.+. . +.++||+-. |....+...-.+-
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 000 222456788998 8999998875 2 579999964 5443333333333
Q ss_pred eeEEEEeeCCCcCEEEEEEc---CCeEEEEECCCCceEEEec----CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 188 VNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLE----GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
-.+++|-|.|+ +|++.-. ...|.+|. ++|-.-..|. .....|..+.|++++..|+....| .|.+|...+
T Consensus 259 e~~l~WrPsG~--lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~N 334 (928)
T PF04762_consen 259 EGALSWRPSGN--LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSN 334 (928)
T ss_pred cCCccCCCCCC--EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeC
Confidence 45789999997 5666543 35577776 3444333332 345679999999999999998766 499999998
Q ss_pred ce--eEEEeecC-CccEEEEEEecC-CCEEEEEecCCeEEEEc----CCCcceeEEcCCCcEEEEeeCcEEEEEeeeccc
Q 002511 261 YR--LENTLNYG-LERVWAIGYMKS-SRRIVIGYDEGTIMVKI----GREEPVASMDNSGKIIWAKHNEIQTVNIKSVGA 332 (914)
Q Consensus 261 ~~--~~~~~~~~-~~~v~~i~~~~~-~~~l~~~~~dg~i~i~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 332 (914)
+. +.+.+... ...+..+.|+|. ...|.+.+.+|.+.... ....+...-...|.....-...+.+..+....
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~- 413 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAV- 413 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccC-
Confidence 87 33444433 234555999996 44577777767665521 11110000001111111111111111111000
Q ss_pred ceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEE-cCCcEEEEEeecccc-----------------------cc
Q 002511 333 DYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVC-GDGEYIIYTALAWRN-----------------------RS 388 (914)
Q Consensus 333 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~-~~~~~~i~~~~~~~~-----------------------~~ 388 (914)
-+.++...++. ....+..++|++++..+++. ++|.+.+|....... ..
T Consensus 414 -------VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (928)
T PF04762_consen 414 -------VPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELP 485 (928)
T ss_pred -------CCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccc
Confidence 00111112222 23467899999998755555 589899997432110 01
Q ss_pred cCceeEEEEecCCcEEEEecC----CeEEEeccCccc-ceeeecCcccceeecCcEEEEEeCC--eEEEEeccCCcEEE-
Q 002511 389 FGSALEFVWSSDGEYAVRESS----SKIKIFSKNFQE-KRSVRPTFSAERIYGGTLLAMCSND--FICFYDWAECRLIR- 460 (914)
Q Consensus 389 ~~~~~~~~~s~~~~~l~~~~~----~~i~v~~~~~~~-~~~~~~~~s~~~i~~g~~La~~~~~--~i~~~d~~~~~~i~- 460 (914)
......++|..++.+++.... ..+.+++..... ...+......+ +..+.....+ ...++-..+|+.+.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 486 LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 234578888877766555543 456666542111 11111111111 1122221111 21223233343331
Q ss_pred ----------EEEcceeE--EEEcCCCC---EEEEEeCCeEEEEEecHHHHHHhhhCCCCCCccccccceeEeeeeeeEE
Q 002511 461 ----------RIDVTVKN--LYWADSGD---LVAIASDTSFYILKYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERV 525 (914)
Q Consensus 461 ----------~~~~~i~~--v~~s~dg~---~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 525 (914)
.+...+.. +....+.. .++..+..+.++.. -..+...+
T Consensus 562 ~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n---------------------------~~~la~~~ 614 (928)
T PF04762_consen 562 SSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYAN---------------------------SRLLASNC 614 (928)
T ss_pred ecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEEC---------------------------CEEEecCC
Confidence 11111111 11112211 22222333333321 11234567
Q ss_pred EeeEEecCEEEEEccCCeEEEEECC-----------E-----EeEEEecccceEEEEEeecCCEEEEEecCCceEEEEec
Q 002511 526 RTGLWVGDCFIYNNSSWRLNYCVGG-----------E-----VTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLL 589 (914)
Q Consensus 526 ~~~~w~~~~~i~~~~~~~l~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~ 589 (914)
+|....+++++|+|.+..+.+.... . -..++...+.-.++...|...++++.-+.||+....+.
T Consensus 615 tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR 694 (928)
T PF04762_consen 615 TSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPR 694 (928)
T ss_pred ceEEEEcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccH
Confidence 7788889999999997767766533 0 01233444455688888999999999999998877764
Q ss_pred chhHh-HHHHHHccCHHHH
Q 002511 590 LSLIE-YKTLVMRGDLERA 607 (914)
Q Consensus 590 ~~~~~-~~~~~~~~~~~~a 607 (914)
.-++. ....+.++++.+|
T Consensus 695 ~LVL~~ir~~Ld~~~Y~~A 713 (928)
T PF04762_consen 695 ALVLAGIRKLLDAKDYKEA 713 (928)
T ss_pred hHHHHHHHHHHhhccHHHH
Confidence 32222 2333444455554
No 195
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=1.2e-16 Score=173.95 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=186.7
Q ss_pred CCCEEEEEEcCCC-CEEEEEecCCcEEEEeCCCCce--eEE----eeecCCCeEEEEEecCCCE--EEEEECCCEEEEEE
Q 002511 15 SERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQTM--AKS----FEVTELPVRSAKFVARKQW--VVAGADDMFIRVYN 85 (914)
Q Consensus 15 ~~~v~~~~~sp~~-~~la~~~~~g~v~iwd~~~~~~--~~~----~~~~~~~v~~~~~s~~~~~--l~~g~~dg~i~vwd 85 (914)
...|+|+.|+|.. .++|.|+++|.|.+||+..+.. ... ...|..+|..+.|..+..- +++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4679999999954 5677788899999999987754 222 2358889999999876544 99999999999998
Q ss_pred CCCCee-e-----EEEe------cCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCC---c----eEEEEeecCcccE
Q 002511 86 YNTMDK-V-----KVFE------AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKG---W----MCTQIFEGHSHYV 145 (914)
Q Consensus 86 ~~t~~~-~-----~~~~------~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~---~----~~~~~~~~~~~~i 145 (914)
++-... . .... .....+++++|.+.. ..+++|+++|.|.--+.... . +....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 763222 0 0111 123468999999865 46888999999887443322 1 1233556788999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECC-CCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC--CceE
Q 002511 146 MQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--KSCV 222 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~ 222 (914)
.++.++|-....|.+++ |-++++|... ...++..+..+...+++++|||.... .++++..+|.+.+||+.. ..++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-vF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-VFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-EEEEEcCCCceehhhhhccccCCc
Confidence 99999996666666666 9999999988 67788888888888999999998764 788888899999999964 3455
Q ss_pred EEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 223 QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 223 ~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
.+...+....+.+.|+++|+.|++|...|.+++|++.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5555556667788999999999999999999999985
No 196
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=3.3e-16 Score=149.97 Aligned_cols=308 Identities=16% Similarity=0.257 Sum_probs=212.1
Q ss_pred CCCEEEEEEcCCCCEEEEEec-CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE-CCCEEEEEECCCCeee
Q 002511 15 SERVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYNTMDKV 92 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~-~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~vwd~~t~~~~ 92 (914)
-+.|..+.|..|..+++++.+ ++.|.+|++...+-...+.....++.+++|||||+.|...+ -+-.|.||.+.|.+..
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999999988887654 88999999988888888888888999999999997766554 4889999999986554
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC--CCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 93 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
.. +.....+..++|+|||++.+.++.-...-.+++. ..+.+.+.+...+-..+.+.|+| |++.+++ |
T Consensus 128 ~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laV---------w 196 (447)
T KOG4497|consen 128 LL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAV---------W 196 (447)
T ss_pred Ee-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEE---------e
Confidence 33 3334456889999999998888764221111111 12333444444455678899999 7776664 4
Q ss_pred ECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-----------------------------
Q 002511 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC----------------------------- 221 (914)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------------------- 221 (914)
|.--.-.+... ...-++..+.|+|.++ +|++|+.|+.+++.+--+.++
T Consensus 197 d~~Leykv~aY-e~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 197 DNVLEYKVYAY-ERGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred cchhhheeeee-eeccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 42111111111 1235678899999877 899999999888755221110
Q ss_pred -------------------------------EEEec------CcccceEEEEEeCCCCEEEEEEC--CCeEEEEeCCCce
Q 002511 222 -------------------------------VQTLE------GHTHNVSAVCFHPELPIIITGSE--DGTVRIWHATTYR 262 (914)
Q Consensus 222 -------------------------------~~~~~------~~~~~v~~i~~~~~~~~l~~~~~--dg~v~iwd~~~~~ 262 (914)
++.++ .....+.-++|++|..++++-.. -+.+-+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 00111 11224677899999988887643 3579999999877
Q ss_pred eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCcee
Q 002511 263 LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERL 342 (914)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 342 (914)
+...+. ...+|....|.|....|+++.....+++|.......+....
T Consensus 354 l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-------------------------------- 400 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-------------------------------- 400 (447)
T ss_pred hhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--------------------------------
Confidence 655443 34789999999999999999998889888555433332222
Q ss_pred eeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEE
Q 002511 343 PLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYII 378 (914)
Q Consensus 343 ~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i 378 (914)
....+..+.|..+|.+++.++.+.+.+
T Consensus 401 ---------~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 401 ---------KGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred ---------CCceeeeEEecCCCcEEEEEcCCceEE
Confidence 123567899999999999998665544
No 197
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.74 E-value=7.4e-14 Score=156.68 Aligned_cols=277 Identities=14% Similarity=0.206 Sum_probs=169.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCc--EEEEeCCC-Cc---eeEEee--ecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGT--VCIWNYQS-QT---MAKSFE--VTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~--v~iwd~~~-~~---~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
|.+.-.+...+|.-..++++...+. +.++.++. ++ ....+. ..+..|.++.|..++.-++.+...|.|.+-|
T Consensus 17 ~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd 96 (1265)
T KOG1920|consen 17 GPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVD 96 (1265)
T ss_pred CCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEc
Confidence 4443455566666655666533222 23333222 22 111121 2345899999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC----CC-----------------c-eEEEEeecC--
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE----KG-----------------W-MCTQIFEGH-- 141 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~-----------------~-~~~~~~~~~-- 141 (914)
..+... .....-.+.|.+++||||+..++..+..+++.+-+-. .. | .....+.+.
T Consensus 97 ~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~g 175 (1265)
T KOG1920|consen 97 PETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEG 175 (1265)
T ss_pred ccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchh
Confidence 887543 3334456789999999999999999888888775421 00 0 000011111
Q ss_pred -------------------cccEEEEEEccCCCCEEEEE-----eCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCC
Q 002511 142 -------------------SHYVMQVTFNPKDTNTFASA-----SLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGG 197 (914)
Q Consensus 142 -------------------~~~i~~~~~~p~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 197 (914)
...=++++|-- |+.+|++. ...+.|++||.. +.....-....+.-.+++|-|.|
T Consensus 176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 176 RQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG 253 (1265)
T ss_pred hhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCC
Confidence 11124588987 88888883 223799999976 44333333334444689999977
Q ss_pred CcCEEEEEE---cCCeEEEEECCC---CceEEEecCcccceEEEEEeCCCCEEEE---EECCCeEEEEeCCCce--eEEE
Q 002511 198 DKPYLITGS---DDHTAKVWDYQT---KSCVQTLEGHTHNVSAVCFHPELPIIIT---GSEDGTVRIWHATTYR--LENT 266 (914)
Q Consensus 198 ~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~~---~~~dg~v~iwd~~~~~--~~~~ 266 (914)
. .+++.. +++.|.+|.-+. |.....+......+..++|+.++..|++ ......|++|.+.++. +.+.
T Consensus 254 s--~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~ 331 (1265)
T KOG1920|consen 254 S--LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE 331 (1265)
T ss_pred C--eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE
Confidence 6 566543 356788887432 2222223333444899999999999887 4555569999998876 3334
Q ss_pred eecCCccEEEEEEecCC-CEEEEEecCCeEEE
Q 002511 267 LNYGLERVWAIGYMKSS-RRIVIGYDEGTIMV 297 (914)
Q Consensus 267 ~~~~~~~v~~i~~~~~~-~~l~~~~~dg~i~i 297 (914)
+..+.... +.|+|.. ..+.+-..+|...+
T Consensus 332 l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 332 LQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred Eecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 44443322 7888853 33444446666555
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=154.22 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=155.9
Q ss_pred CEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeC--CCCEEEEEEcCCeEEEEECCCCceEEE-EeecCc-ccE
Q 002511 70 QWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKGWMCTQ-IFEGHS-HYV 145 (914)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~-~~i 145 (914)
..+|++.+.|.|++||..|++.+..+++++..+..+.|.. ....+.+|+.||+|++||++...+..+ .+..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5689999999999999999999999999999999999987 345788999999999999997644433 344444 456
Q ss_pred EEEEEccCCCCEEEEEeC----CCcEEEEECCCCCC-cEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC
Q 002511 146 MQVTFNPKDTNTFASASL----DRTIKIWNLGSPDP-NFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK 219 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 219 (914)
.+++.+- ..+.+++|+. +-.|.+||.+..+. +..+ ..|...|++++|+|.... +|++|+.||.|.+||+...
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeeecCCC
Confidence 6666654 5677777754 56799999998766 4433 679999999999998765 9999999999999998753
Q ss_pred c---eEEEecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCceeEEEee
Q 002511 220 S---CVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLN 268 (914)
Q Consensus 220 ~---~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (914)
. .+...-.+...|.++.|+..+ +.|.+-+..++..+|++..+.....+.
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2 122233477789999999887 458888889999999999887554443
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.3e-17 Score=166.20 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=234.5
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee-ecCCCeEEEEEecC--CCEEEEEECCCE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE-VTELPVRSAKFVAR--KQWVVAGADDMF 80 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--~~~l~~g~~dg~ 80 (914)
++.+..+|.+|.+.|..+.|+..|..|++|+.|..|.+||+.++.....|. +|...|....|.|. .+.+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 567788999999999999999999999999999999999999998877765 58888888889884 467999999999
Q ss_pred EEEEECCC-Cee--eEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEE--EeecCcc---cEEEEEEc
Q 002511 81 IRVYNYNT-MDK--VKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQ--IFEGHSH---YVMQVTFN 151 (914)
Q Consensus 81 i~vwd~~t-~~~--~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~---~i~~~~~~ 151 (914)
+++=.+.. +.. .+.+..|.++|.-++.-|+.+ .|.+++.|+.+.-.|++.+..... .-..+.. ...+++.+
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99877643 322 345668999999999999875 478999999999999987622211 1122333 57889999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCC------cEEE------ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDP------NFTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT- 218 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 218 (914)
|...+.|++++.|..+++||.+.-.. +.++ ......|+|++|+.++.. +++...|-.|+++.-.-
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE--lLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE--LLASYNDEDIYLFNKSMG 368 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc--eeeeecccceEEeccccc
Confidence 98888999999999999999865321 1222 233457899999977764 77777888899995332
Q ss_pred -C----------ceEE-EecCcccc--eEEEEE-eCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCC
Q 002511 219 -K----------SCVQ-TLEGHTHN--VSAVCF-HPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 219 -~----------~~~~-~~~~~~~~--v~~i~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
| ..+. .+++|... |..+-| -|...++++|+.-|.|.||+-.+++.+..+.+...-|.|+.-+|--
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 2 1222 26777543 666664 5778899999999999999999999998888877789999999999
Q ss_pred CEEEEEecCCeEEEEcCC
Q 002511 284 RRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 284 ~~l~~~~~dg~i~i~~~~ 301 (914)
..||+++-|.-|.||...
T Consensus 449 PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPL 466 (559)
T ss_pred chhhccCCccceeeecCC
Confidence 999999999999999653
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=3.3e-16 Score=149.92 Aligned_cols=243 Identities=16% Similarity=0.245 Sum_probs=192.4
Q ss_pred EeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe---eeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 52 SFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD---KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
.+.....+|+|.+|++|+..+|++..+..|.||.....+ ..+++..|...|++++|+|..+.|++|+.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 344456799999999999999999999999999876544 67888999999999999999999999999999999998
Q ss_pred CCC--ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCc----EEEecCCCCeeEEEEeeCCCcCEE
Q 002511 129 EKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTLDAHQKGVNCVDYFTGGDKPYL 202 (914)
Q Consensus 129 ~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l 202 (914)
..+ +.....+..++...+++.|+| ..+.|++|+.-+.|.||-.....-- ..-..+...|.+++|+|++- ++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV--Ll 161 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV--LL 161 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc--ee
Confidence 433 444556667889999999999 8999999999999999987654321 12245677899999999876 79
Q ss_pred EEEEcCCeEEEEECCC------------------CceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce-e
Q 002511 203 ITGSDDHTAKVWDYQT------------------KSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-L 263 (914)
Q Consensus 203 ~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~ 263 (914)
++|+.|+..++|..-- |+.+..+....+.+..+.|+|+|..|+-.+.|+++.+-|..... .
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 9999999999986421 22233444456789999999999999999999999999977664 3
Q ss_pred EEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 264 ENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 264 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+..+....-+..++.|-.+...++.|.+-+-+.+
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLF 275 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEE
Confidence 4444444467788888877766666655444443
No 201
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=3.2e-16 Score=153.87 Aligned_cols=227 Identities=14% Similarity=0.228 Sum_probs=168.5
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCCCC-------ceeEEeeecCCCeEEEEEecCC-CEEEEEECCCE
Q 002511 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARK-QWVVAGADDMF 80 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~ 80 (914)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+|.- +.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 5567899999999999998764 4567788999999999999964 67889999999
Q ss_pred EEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcc-cEEEEEEccCCCCEEE
Q 002511 81 IRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH-YVMQVTFNPKDTNTFA 159 (914)
Q Consensus 81 i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~~~~p~~~~~l~ 159 (914)
|.+||+.||+.+-++. |.+.|.++.|+.+|.+|++++.|..|+|||.+++ .+...-.+|.+ .-..+.|-. ++..+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~-~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLA-SGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccccCCCcceeEEec-cCceee
Confidence 9999999999988888 9999999999999999999999999999999998 45544456654 234455665 666555
Q ss_pred EEe---CCCcEEEEECCCCCCcEEEe--cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-EEEecC--cccc
Q 002511 160 SAS---LDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEG--HTHN 231 (914)
Q Consensus 160 ~~~---~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--~~~~ 231 (914)
+|. .++++-+||..+-.....+. ....+|.---|.++. ..+.++|-.|+.|+-|.+....+ ++.+.. ...+
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt-~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT-SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC-CEEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence 543 36789999976644322221 123444444444444 33566777899999999876543 222221 2234
Q ss_pred eEEEEEeCC
Q 002511 232 VSAVCFHPE 240 (914)
Q Consensus 232 v~~i~~~~~ 240 (914)
-..+.|-|.
T Consensus 312 QRG~g~mPK 320 (472)
T KOG0303|consen 312 QRGMGFMPK 320 (472)
T ss_pred ccccccccc
Confidence 455666664
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.7e-16 Score=150.11 Aligned_cols=245 Identities=13% Similarity=0.160 Sum_probs=183.1
Q ss_pred EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECC------CCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeE
Q 002511 51 KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYN------TMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLI 123 (914)
Q Consensus 51 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~------t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i 123 (914)
+.+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++.... .|...|.|++|...+.++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3455799999999999999999999999999999985 345565554 455889999999999999999999999
Q ss_pred EEEECCCCceEEEEee--cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC-CcE--EEecCCCCeeEEEEeeCCC
Q 002511 124 KLWDWEKGWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNF--TLDAHQKGVNCVDYFTGGD 198 (914)
Q Consensus 124 ~iwd~~~~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~--~~~~~~~~v~~~~~~~~~~ 198 (914)
...|+++. +...++. ...+.|..+..+| ..+.|++.+.++.|.+||.+... +.. .+.........+-|+|...
T Consensus 130 I~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETK-QSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccc-eeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999987 3333333 2235899999999 68999999999999999998754 322 2233455677888988765
Q ss_pred cCEEEEEEcCCeEEEEECCCCce-EEE------ecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeE-EEeecC
Q 002511 199 KPYLITGSDDHTAKVWDYQTKSC-VQT------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYG 270 (914)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~-~~~------~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~ 270 (914)
. +|++.+..+.+-+||.+.... +.. +......-.++.|+|+|..+++--....-.+||+.+.++. ..+...
T Consensus 208 ~-Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 208 A-LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred e-eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 4 888999999999999885432 111 1111222357889999999888766666677887765532 222211
Q ss_pred ------CccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 271 ------LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 271 ------~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
...+.+++|..|- .+++|+++-.+.+|.
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK 320 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence 2356778887664 499999999999984
No 203
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=4.6e-16 Score=146.67 Aligned_cols=238 Identities=17% Similarity=0.229 Sum_probs=181.9
Q ss_pred cCCCCEEEEEEcCCCC-----EEEEEecCCcEEEEeCCCC--ce--eEEe-----eecCCCeEEEEEec-CCCEEEEEEC
Q 002511 13 QRSERVKSVDLHPSEP-----WILASLYSGTVCIWNYQSQ--TM--AKSF-----EVTELPVRSAKFVA-RKQWVVAGAD 77 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~-----~la~~~~~g~v~iwd~~~~--~~--~~~~-----~~~~~~v~~~~~s~-~~~~l~~g~~ 77 (914)
.|.-+++.+-|.|+.. +||+++ ..+++|.+... +. ...+ ..+..++++..|+. +-++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999999863 555543 47999998742 11 1111 12567999999987 5677888889
Q ss_pred CCEEEEEECCCCee---eEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEeecC--cccEEEEEEc
Q 002511 78 DMFIRVYNYNTMDK---VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFN 151 (914)
Q Consensus 78 dg~i~vwd~~t~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~ 151 (914)
|-+..|||++++.. ...+-+|...|..++|...+ +.+++++.||.++++|++......-+++.. ..+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998733 44566899999999999865 468899999999999999865444455432 4678899999
Q ss_pred cCCCCEEEEEeCC-CcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc------eEE
Q 002511 152 PKDTNTFASASLD-RTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS------CVQ 223 (914)
Q Consensus 152 p~~~~~l~~~~~d-g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~ 223 (914)
+.+.+++++-..| ..|.+.|++.. .++..+++|.+.|+.++|.|.... .|+++++|..+.+||++..- ++.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS-HICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc-eeeecCCcceEEEEecccccccCCCCchh
Confidence 9999999886655 56999999875 577889999999999999998765 89999999999999997532 222
Q ss_pred EecCcccceEEEEEeCC-CCEEEEEECCCeEEE
Q 002511 224 TLEGHTHNVSAVCFHPE-LPIIITGSEDGTVRI 255 (914)
Q Consensus 224 ~~~~~~~~v~~i~~~~~-~~~l~~~~~dg~v~i 255 (914)
... ..+.|..+.|++. ...++.+. +..+.+
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 223 4567999999974 45676665 345544
No 204
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=2.2e-15 Score=148.03 Aligned_cols=203 Identities=22% Similarity=0.288 Sum_probs=164.2
Q ss_pred EEEecCCCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCC------ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 93 KVFEAHTDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKG------WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 93 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
..+.+|.++|..++|+|- ...|++||+|.+|.||++..+ ......+.+|...|..+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 445689999999999994 467899999999999998754 2446678899999999999998899999999999
Q ss_pred cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccc-eEEEEEeCCCCEE
Q 002511 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPII 244 (914)
Q Consensus 166 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l 244 (914)
+|.+|++.+++.+.++. |...|.+++|+.+|. ++++.+.|+.|+|||.++++.+..-.+|.+. -..+.|-.+|.++
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 99999999999988887 999999999999988 7999999999999999999999888777653 4566788888855
Q ss_pred EEEE---CCCeEEEEeCCCcee---EEEeecCCccEEEEEEecCCCEEEE-EecCCeEEEEc
Q 002511 245 ITGS---EDGTVRIWHATTYRL---ENTLNYGLERVWAIGYMKSSRRIVI-GYDEGTIMVKI 299 (914)
Q Consensus 245 ~~~~---~dg~v~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~-~~~dg~i~i~~ 299 (914)
-+|. .+..+-+||..+.+. ..++... ..|.---|.+|.+.+.. |-.|+.|+.+.
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4443 467899999776553 3344433 34555557777776654 55678888754
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.9e-17 Score=163.56 Aligned_cols=270 Identities=16% Similarity=0.248 Sum_probs=222.2
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~ 96 (914)
.-..+.++.+|..|+.|+..|.|-.+|+.++.+...+... ..|..+.|-.+.+++|++. ...++|||- .|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehh
Confidence 4577899999999999999999999999999998888744 4689999999998888875 568999994 577788887
Q ss_pred cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC
Q 002511 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD 176 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 176 (914)
.|. .|..+.|-|..-+|++++..|.+.--|+.+| .+...+....+.+..++-+| -+..+-+|..+|+|.+|+..+.+
T Consensus 208 ~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 208 RHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hcC-chhhhcccchhheeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc
Confidence 665 5899999999888889999999999999998 55556666677889999999 78899999999999999999999
Q ss_pred CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEE
Q 002511 177 PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256 (914)
Q Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iw 256 (914)
++..+..|.++|.++++.++|. |+++.+.|..++|||+++...+.++.. ..+...+++|..| +++.+....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~--YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGR--YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCc--EEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999887 999999999999999998877777664 5567888999876 3444455689999
Q ss_pred eCC-Cce--eEEEee--cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 257 HAT-TYR--LENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 257 d~~-~~~--~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
.-. .+. ....+- ...++|..+.|.|-...|-+|...|.-.+
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 522 211 111111 11358999999999999999988887655
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-15 Score=167.29 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=166.1
Q ss_pred CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCC
Q 002511 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (914)
Q Consensus 36 ~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~ 112 (914)
+..|.+||..... .+.+..+...+.+.+|||||+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999976544 55677788889999999999999987653 4799999988764322 21222344689999999
Q ss_pred EEEEEE-cCCeEEEE--ECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE-eCCCcEEEEECCCCCCcEEEecCCCCe
Q 002511 113 YVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA-SLDRTIKIWNLGSPDPNFTLDAHQKGV 188 (914)
Q Consensus 113 ~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v 188 (914)
.|+.++ .+|.+.|| |+.++ .. ..+..+...+.+..|+| ++..++.+ ..++...+|++...........+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~-~~-~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGG-TP-SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCC-Ce-EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 888765 57765555 66555 33 33445666788999999 77766554 4578888887643222222223333
Q ss_pred eEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeC--CCceeEEE
Q 002511 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA--TTYRLENT 266 (914)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~ 266 (914)
.+..|+|+++ +++..+.++ +.+||+.++........+ ...++.|+|+|++|++++.+|.+.+|.+ .+|+....
T Consensus 336 ~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 4578999987 677766655 566999888754332222 3456789999999999999998888875 35778888
Q ss_pred eecCCccEEEEEEecC
Q 002511 267 LNYGLERVWAIGYMKS 282 (914)
Q Consensus 267 ~~~~~~~v~~i~~~~~ 282 (914)
+..+.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 8877788889999885
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.3e-15 Score=145.87 Aligned_cols=234 Identities=16% Similarity=0.165 Sum_probs=185.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc---eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEEC-CC
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT---MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNY-NT 88 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~t 88 (914)
.--.+|+|.+|++|+..+|++..+..|.||.....+ ..++++.|+..|+++.|+|.++.|++|+.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999976654 66788889999999999999999999999999999998 33
Q ss_pred C--eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC---ceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 89 M--DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 89 ~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
+ ++...+..++...+++.|+|.++.+++|+.-..|.+|-.+.. +...++-..+.+.|.++.|+| ++-++++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceeccccc
Confidence 3 345556678899999999999999999999999999987754 233445556778899999999 8889999999
Q ss_pred CCcEEEEECC-----C-------------CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc-eEEE
Q 002511 164 DRTIKIWNLG-----S-------------PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-CVQT 224 (914)
Q Consensus 164 dg~i~vwd~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 224 (914)
|+..+++..- . |.....+....+.+..+.|+|+|. .|+-.+.|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~--~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN--RLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC--EeeEecCCCceEEeecCCCchhccc
Confidence 9999999741 1 112233345667899999999998 68889999999999977554 3444
Q ss_pred ecCcccceEEEEEeCCCCEEEEEECC
Q 002511 225 LEGHTHNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 225 ~~~~~~~v~~i~~~~~~~~l~~~~~d 250 (914)
.....-+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444446677777766543 4444444
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=1.8e-14 Score=154.69 Aligned_cols=259 Identities=14% Similarity=0.184 Sum_probs=174.2
Q ss_pred EEecCCcEEEEeCCC-Cc--eeEEeeecCCCeEEEEEecCCCEEEEEE-CCCEEEEEECC-CCee--eEEEecCCCCEEE
Q 002511 32 ASLYSGTVCIWNYQS-QT--MAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYNYN-TMDK--VKVFEAHTDYIRC 104 (914)
Q Consensus 32 ~~~~~g~v~iwd~~~-~~--~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~vwd~~-t~~~--~~~~~~~~~~i~~ 104 (914)
+...++.|.+|++.+ ++ .++.+. +.+....++++|++++|++++ .++.|.+|+++ +++. +.... ..+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 335689999999964 43 444454 345677899999999987765 47889999986 3332 22222 3345678
Q ss_pred EEEeCCCCEEEEEEc-CCeEEEEECCCCce---EEEEeecCcccEEEEEEccCCCCEEE-EEeCCCcEEEEECCCCCCcE
Q 002511 105 VAVHPTLPYVLSSSD-DMLIKLWDWEKGWM---CTQIFEGHSHYVMQVTFNPKDTNTFA-SASLDRTIKIWNLGSPDPNF 179 (914)
Q Consensus 105 ~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~p~~~~~l~-~~~~dg~i~vwd~~~~~~~~ 179 (914)
++|+|+++++++++. ++.|.+|++++... ...... +.....+++++| +++.++ +...++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 999999999888764 78999999974311 222222 223456788999 666665 55567999999997632221
Q ss_pred -------EEecCCCCeeEEEEeeCCCcCEEEEEEc-CCeEEEEECCC--Cc--eEEEecCc------ccceEEEEEeCCC
Q 002511 180 -------TLDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQT--KS--CVQTLEGH------THNVSAVCFHPEL 241 (914)
Q Consensus 180 -------~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~~------~~~v~~i~~~~~~ 241 (914)
... .......+.|+|+++ +++++.. ++.|.+|++.. ++ .+..+... ......+.++|++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 111 234457899999887 6666655 89999999973 32 23333221 1123468899999
Q ss_pred CEEEEEEC-CCeEEEEeCCCce----eEEEeecCCccEEEEEEecCCCEEEEEec-CCeEEEE
Q 002511 242 PIIITGSE-DGTVRIWHATTYR----LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMVK 298 (914)
Q Consensus 242 ~~l~~~~~-dg~v~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i~ 298 (914)
++++++.. ++.|.+|++.... .+...... ...+.+.++|+|++|+++.. ++.|.+|
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 99988854 6899999985432 22332222 34568999999999998775 7778775
No 209
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=7.3e-14 Score=136.82 Aligned_cols=236 Identities=12% Similarity=0.176 Sum_probs=179.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC--CEEEEEECCCCee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDK 91 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~vwd~~t~~~ 91 (914)
....+..+.|+.+...|.+|+.+| -++|+................|.-+-|+ ..++|..+.+ ..+++++.+.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 445688888999999999999888 6788877654422222222344445554 4466665553 3599999988887
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee---cCcccEEEEEEccCCCCEEEEE--eCCCc
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE---GHSHYVMQVTFNPKDTNTFASA--SLDRT 166 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~p~~~~~l~~~--~~dg~ 166 (914)
+..+.- ...|.++.++.+ +|+++-.+. |+|||+++. ++..++. .+...+.++++++ .+.+++.- ...|.
T Consensus 81 ICe~~f-pt~IL~VrmNr~--RLvV~Lee~-IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 81 ICEIFF-PTSILAVRMNRK--RLVVCLEES-IYIYDIKDM-KLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEec-CCceEEEEEccc--eEEEEEccc-EEEEecccc-eeehhhhccCCCccceEeeccCC-CCceEEecCCCCCce
Confidence 777763 457999999854 677777654 999999998 4444433 2444566666665 45566653 23689
Q ss_pred EEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe-EEEEECCCCceEEEecCc--ccceEEEEEeCCCCE
Q 002511 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPELPI 243 (914)
Q Consensus 167 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~ 243 (914)
|.+||..+-++...+..|++.+.+++|+++|. +|++++..|+ ||++.+.+|+.+..|+.. ...|.+++|+|++++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~--llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGT--LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCC--EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 99999999999999999999999999999998 8999999987 789999999999998743 345889999999999
Q ss_pred EEEEECCCeEEEEeCCC
Q 002511 244 IITGSEDGTVRIWHATT 260 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~ 260 (914)
|++.|..++|++|.+..
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998763
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4.7e-14 Score=138.12 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=176.3
Q ss_pred CCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC--CeEEEEECCCCceEE
Q 002511 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKGWMCT 135 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 135 (914)
..+..+.|+.+...|.+|+.|| .++|+................|.-+-|+.+ +++..+.+ ..+++++.+.+..+-
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 4567777999999999999988 678887765443333333445666667643 56655554 358999988764433
Q ss_pred EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC-CCCeeEEEEeeCCCcCEEEEEE--cCCeEE
Q 002511 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH-QKGVNCVDYFTGGDKPYLITGS--DDHTAK 212 (914)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~--~dg~i~ 212 (914)
... ....|.++.++. +.|+++-.+ .|+|||+++.+.+.++... ..+-..++++++..+.|++--+ ..|.|.
T Consensus 83 e~~--fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIF--FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEe--cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 333 345699999975 455555544 4999999999888777544 2222244555555554777543 368999
Q ss_pred EEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCe-EEEEeCCCceeEEEeecCC--ccEEEEEEecCCCEEEEE
Q 002511 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~~~ 289 (914)
+||..+-+++..+..|.+++.+++|+++|.+||++|..|+ ||++++.+|+.+..+..+. ..|.+++|+|++++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999987 7999999999999888664 468899999999999999
Q ss_pred ecCCeEEEEc
Q 002511 290 YDEGTIMVKI 299 (914)
Q Consensus 290 ~~dg~i~i~~ 299 (914)
++.++|.++.
T Consensus 237 S~TeTVHiFK 246 (391)
T KOG2110|consen 237 SNTETVHIFK 246 (391)
T ss_pred cCCCeEEEEE
Confidence 9999999964
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5e-15 Score=162.55 Aligned_cols=288 Identities=15% Similarity=0.184 Sum_probs=202.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecC---CCCEEEEEEeC--CCCEEEEEEcCCeEEEEECCCC-
Q 002511 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH---TDYIRCVAVHP--TLPYVLSSSDDMLIKLWDWEKG- 131 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~---~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~- 131 (914)
.+...+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+-. |...+++|+.||.|+||+--..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 35677899999999999988889999999999888777643 34688888865 3457899999999999974321
Q ss_pred ---ceEEEEee-------cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe-cCCCCeeEEEEeeCCCcC
Q 002511 132 ---WMCTQIFE-------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKP 200 (914)
Q Consensus 132 ---~~~~~~~~-------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 200 (914)
.++..-+. +..+.-.-+.|.. ...+|++++.-..|+|||.........+. +....++++.-+..+ ++
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-Cc
Confidence 12222111 1111124467877 44455555568899999998766665553 234455666544333 34
Q ss_pred EEEEEEcCCeEEEEECCCCc---eEEEecCcccc--eEEEEEeCCCC-EEEEEECCCeEEEEeCCCceeEEE--eecCC-
Q 002511 201 YLITGSDDHTAKVWDYQTKS---CVQTLEGHTHN--VSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENT--LNYGL- 271 (914)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~i~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~- 271 (914)
.+++|..||.|++||.+... .+...+.|... |..+.+.+.|- .|++|+.+|.|++||++....... +..+-
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 89999999999999988633 46667778777 99999998765 499999999999999987432222 22221
Q ss_pred -c-cEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeec
Q 002511 272 -E-RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (914)
Q Consensus 272 -~-~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (914)
+ .++++..++....+|+|+. +.+.||...+..+..+..++.. +
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F----------------------------------~ 1347 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF----------------------------------M 1347 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc----------------------------------c
Confidence 3 5899999999999999998 8898876555544433322111 1
Q ss_pred CCcccCCceEEECCCCCEEEEEc-CCcEEEEEee
Q 002511 350 GTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTAL 382 (914)
Q Consensus 350 ~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~~ 382 (914)
+.....+.+++|+|-.-++|+|. |..+.||...
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 22333457999999988888887 7788888543
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=9.7e-14 Score=133.28 Aligned_cols=235 Identities=16% Similarity=0.270 Sum_probs=166.7
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCC--EEEEEEeCCCCEEE-EEEcC------CeEEEEECC
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVL-SSSDD------MLIKLWDWE 129 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~--i~~~~~s~~~~~l~-~~~~d------g~i~iwd~~ 129 (914)
...+++|+.|...+++|.++| .+||+.+-.+.......+.+. +.-+-|- .++|+ +|+.+ ..|.|||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 445699999999999998887 899998764433222222222 2222222 23454 44333 479999944
Q ss_pred CCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC-CCCCcEEEecCCCCeeEEEEeeCCCcCEEEE-EEc
Q 002511 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD 207 (914)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~ 207 (914)
.. .+...+. ...+|.++.+.+ +.+++. ..+.|.+|... +.+.+..+.....+---++..|..+..+|+. |..
T Consensus 84 k~-~~i~el~-f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KE-RCIIELS-FNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred cC-cEEEEEE-eccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 44 4444443 457799999986 345444 46899999987 4555555543332222334455544435554 344
Q ss_pred CCeEEEEECCCCce--EEEecCcccceEEEEEeCCCCEEEEEECCCe-EEEEeCCCceeEEEeecCC--ccEEEEEEecC
Q 002511 208 DHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDGT-VRIWHATTYRLENTLNYGL--ERVWAIGYMKS 282 (914)
Q Consensus 208 dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~ 282 (914)
-|.|+|-|+...+. ...+..|.+.|.+++.+-+|.++|++|..|+ |||||..+|.++.++..+. ..|.+++|||+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 69999999986554 5778899999999999999999999999997 8999999999999988654 46999999999
Q ss_pred CCEEEEEecCCeEEEEcCCC
Q 002511 283 SRRIVIGYDEGTIMVKIGRE 302 (914)
Q Consensus 283 ~~~l~~~~~dg~i~i~~~~~ 302 (914)
+.+||++++.|++.++..+.
T Consensus 238 ~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcCCCeEEEEEeec
Confidence 99999999999999975444
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.7e-13 Score=131.65 Aligned_cols=236 Identities=15% Similarity=0.244 Sum_probs=168.3
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEE-EECC------CEEEEEECCCC
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADD------MFIRVYNYNTM 89 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~d------g~i~vwd~~t~ 89 (914)
...+++|+.|...+++|..+| .+||+.+.-+.......+.+.+.-+..--..++|+. |+.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 456699999999999998776 999998764332222222222222222223445543 3332 47999996666
Q ss_pred eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCc--ccEEEEEEccCCCCEEEE-EeCCCc
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFAS-ASLDRT 166 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~-~~~dg~ 166 (914)
+++..+. -..+|.++.+.++ +|++.-. +.|++|.....-+....+.... ...++++-+. +..+|+. |-.-|.
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQ 160 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccce
Confidence 6677665 4668999999876 4666554 6899999885544444444322 2343333222 2333333 445689
Q ss_pred EEEEECCCCCC--cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe-EEEEECCCCceEEEecCc--ccceEEEEEeCCC
Q 002511 167 IKIWNLGSPDP--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT-AKVWDYQTKSCVQTLEGH--THNVSAVCFHPEL 241 (914)
Q Consensus 167 i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~ 241 (914)
|.+-|+...+. ...+..|...|.|++.+..|. .+++++..|+ |+|||..+|..+..++.. ...|.+++|||+.
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 99999987665 478899999999999998887 7999999987 899999999999988743 3469999999999
Q ss_pred CEEEEEECCCeEEEEeCCC
Q 002511 242 PIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~ 260 (914)
.+|++.|..|+|+|+.++.
T Consensus 239 s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEcCCCeEEEEEeec
Confidence 9999999999999998764
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=138.78 Aligned_cols=253 Identities=11% Similarity=0.109 Sum_probs=166.2
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeee-cCCCeEEEEEecCC-CEEEEEECCCEEEEEECCCC----
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM---- 89 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~t~---- 89 (914)
-.+..++||+.-..+|++..|-.|+|||-.. +....++. ....|+|++|-|.+ +-|++|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4688999999888889999999999999655 55555553 35679999999965 5677777655 899976421
Q ss_pred ee----------eEEEecCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 90 DK----------VKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 90 ~~----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
.. +....+| .+|+++.|++||..+++++. |..|.|||.+++ ..........+.+.-+.|+| |++.|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSP-dgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSP-DGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC-CcccccccCCCceeeEEEcC-CCCEE
Confidence 11 1112344 58999999999999998875 578999999998 44444444556788999999 89999
Q ss_pred EEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEe
Q 002511 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH 238 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 238 (914)
++++-|+..++|...............+.|...+|+|.|.. +|++++.... +|.+.....-..+.+ ...+..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf-LLf~~sgsp~--lysl~f~~~~~~~~~-~~~~k~---- 325 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF-LLFACSGSPR--LYSLTFDGEDSVFLR-PQSIKR---- 325 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCE-EEEEEcCCce--EEEEeecCCCccccC-ccccee----
Confidence 99999999999965443333333344568999999999984 4445444333 333321111111111 111212
Q ss_pred CCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCe
Q 002511 239 PELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (914)
Q Consensus 239 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (914)
.+-+-|+..-....--..-.+...+++|.|.|.+||+....+.
T Consensus 326 -------------~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 326 -------------VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred -------------eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 2222222210000000011256789999999999999876655
No 215
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=1.8e-13 Score=146.88 Aligned_cols=266 Identities=12% Similarity=0.167 Sum_probs=167.8
Q ss_pred EEECCCEEEEEECCC-Ce--eeEEEecCCCCEEEEEEeCCCCEEEEEE-cCCeEEEEECCCCceEE--EEeecCcccEEE
Q 002511 74 AGADDMFIRVYNYNT-MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCT--QIFEGHSHYVMQ 147 (914)
Q Consensus 74 ~g~~dg~i~vwd~~t-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~ 147 (914)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++...... ... ........
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceE
Confidence 336689999999964 33 444454 345678899999999987765 47889999997321221 211 12334678
Q ss_pred EEEccCCCCEEEEEe-CCCcEEEEECCCCC-C---cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE
Q 002511 148 VTFNPKDTNTFASAS-LDRTIKIWNLGSPD-P---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV 222 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 222 (914)
++++| +++.+++++ .++.|.+|++.... . ...+. +.....+++++|+++. ++++...++.|.+||+.+...+
T Consensus 85 i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 85 ISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred EEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCCcc
Confidence 99999 777777665 48899999996422 1 22222 2344677889998863 3355556799999999763322
Q ss_pred E-------EecCcccceEEEEEeCCCCEEEEEEC-CCeEEEEeCCC--ce--eEEEeecCC------ccEEEEEEecCCC
Q 002511 223 Q-------TLEGHTHNVSAVCFHPELPIIITGSE-DGTVRIWHATT--YR--LENTLNYGL------ERVWAIGYMKSSR 284 (914)
Q Consensus 223 ~-------~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~v~iwd~~~--~~--~~~~~~~~~------~~v~~i~~~~~~~ 284 (914)
. ... .......+.|+|+|++++++.. ++.|.+|++.. ++ ....+.... .....+.++|+++
T Consensus 162 ~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 111 1234568999999999988876 89999999873 32 333332211 1223588999999
Q ss_pred EEEEEec-CCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECC
Q 002511 285 RIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNP 363 (914)
Q Consensus 285 ~l~~~~~-dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~ 363 (914)
+++++.. ++.|.+|. ++.++... .... ... ....+..+.++|
T Consensus 241 ~lyv~~~~~~~I~v~~--------i~~~~~~~-------~~~~---------------------~~~-~~~~p~~~~~~~ 283 (330)
T PRK11028 241 HLYACDRTASLISVFS--------VSEDGSVL-------SFEG---------------------HQP-TETQPRGFNIDH 283 (330)
T ss_pred EEEEecCCCCeEEEEE--------EeCCCCeE-------EEeE---------------------EEe-ccccCCceEECC
Confidence 9888754 56666542 11111100 0000 000 012456789999
Q ss_pred CCCEEEEEc--CCcEEEEEee
Q 002511 364 NGRFVVVCG--DGEYIIYTAL 382 (914)
Q Consensus 364 ~g~~lav~~--~~~~~i~~~~ 382 (914)
+|++|.++. ++.+.+|...
T Consensus 284 dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEEEccCCcEEEEEEc
Confidence 999888876 6778887553
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=140.66 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=193.9
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
+...+.+|.+.|+++.|-.++. |.+|...|.|++|++.+......+. .|...|+.+.--|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 3455678999999999988876 9999999999999999998888888 67788999999887 4688889999999999
Q ss_pred CCCCceEEEEeecCcccEEEEEEcc-----CCC---CEEEEEeCCC-cEEEEECCCCCCcEEE----ecCCCCeeEEEEe
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNP-----KDT---NTFASASLDR-TIKIWNLGSPDPNFTL----DAHQKGVNCVDYF 194 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p-----~~~---~~l~~~~~dg-~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~ 194 (914)
+..+ .... .|+-.+.++.|.+ +.. ..++.-+... .+++-|......+... .+..+.+.|..+.
T Consensus 84 ia~s-~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYS-AFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCc-ceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9875 2221 1333344444433 111 1111111100 1222222222222211 2334566676643
Q ss_pred e-CCCcCEEEEEEcCCeEEEEECCCCce----------EEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCc--
Q 002511 195 T-GGDKPYLITGSDDHTAKVWDYQTKSC----------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY-- 261 (914)
Q Consensus 195 ~-~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~-- 261 (914)
. .+...++++|..+|.+.+||+.++.. +.....|..+|.++.+.+.-..=++|+.+..+..|++...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 3 24445778889999999999998733 3334458889999999886666678888888999987632
Q ss_pred e--eEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCC
Q 002511 262 R--LENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDG 339 (914)
Q Consensus 262 ~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 339 (914)
. ...++......|..+...||++.+|+++-|+.++++.- .+.
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------------------------------rtl 283 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------------------------------RTL 283 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEe------------------------------------ccC
Confidence 2 22333444467889999999999999999999998421 112
Q ss_pred ceeeeeeeecCCcccCCceEEECCCCCEEEEEc-CCcEEEEEe
Q 002511 340 ERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG-DGEYIIYTA 381 (914)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~-~~~~~i~~~ 381 (914)
..+.+ +.-|...+.+++|+|+..++|.++ |++|.+|+.
T Consensus 284 ~pLAV----LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAV----LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cchhh----hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22211 344556778888888888888777 888888864
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.4e-16 Score=156.48 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=168.2
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE-ecCCCCEEEEEEeC--CCCEEEEEEcCCeEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHP--TLPYVLSSSDDMLIKL 125 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~-~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i 125 (914)
+.+.+.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..+.+..+ .+|...|.++.|-| ++..+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44668899999999999999999999999999999999988888777 48999999999998 4567889999999999
Q ss_pred EECCC---------CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEE----------EecCCC
Q 002511 126 WDWEK---------GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT----------LDAHQK 186 (914)
Q Consensus 126 wd~~~---------~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~~~~~ 186 (914)
+|+.. .......+..|...|..++-.|..++.|.+++.||+|+-+|++....... +...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985 22444556778889999999996779999999999999999987432111 111223
Q ss_pred CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC--------Cc----------eEEEec-Ccc-----------cceEEEE
Q 002511 187 GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT--------KS----------CVQTLE-GHT-----------HNVSAVC 236 (914)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~-----------~~v~~i~ 236 (914)
...|+.++|.... +|++|+.+-..++||.+. +. ++..+. +|. ..++-++
T Consensus 202 elk~ltisp~rp~-~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 202 ELKCLTISPSRPY-YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred eeeeeeecCCCCc-eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 4578899987665 999999999999999431 11 122221 111 1256788
Q ss_pred EeCCCCEEEEEECCCeEEEEeCCCceeEEE
Q 002511 237 FHPELPIIITGSEDGTVRIWHATTYRLENT 266 (914)
Q Consensus 237 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 266 (914)
|+|+|.-|++.-..-.|+++|+..++....
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 999998777665566899999987775443
No 218
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.65 E-value=4.4e-14 Score=149.28 Aligned_cols=268 Identities=22% Similarity=0.210 Sum_probs=175.2
Q ss_pred EeccCCcEEEEEE--cceeEEEEcCCCCEEEEEeCCeEEEE-EecHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEe
Q 002511 451 YDWAECRLIRRID--VTVKNLYWADSGDLVAIASDTSFYIL-KYNRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRT 527 (914)
Q Consensus 451 ~d~~~~~~i~~~~--~~i~~v~~s~dg~~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~ 527 (914)
-|+-.|+....+. +.|..+..+..+..|..-+....+.+ +..+.+-...+ .|+. .
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil-------------nfcs---------y 380 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL-------------NFCS---------Y 380 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH-------------HHhh---------h
Confidence 3444444444333 46677777777776666655443322 21111111000 1211 1
Q ss_pred eEEec--CEEEEEccCCeEEEEECC---EEeEEEecccceEEEEEeecCCEE-EEEecCCceEEEEecchhHhHHHHHHc
Q 002511 528 GLWVG--DCFIYNNSSWRLNYCVGG---EVTTMFHLDRPMYLLGYLASQSRV-YLIDKEFNVMGYTLLLSLIEYKTLVMR 601 (914)
Q Consensus 528 ~~w~~--~~~i~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l-~~~d~~~~~~~~~l~~~~~~~~~~~~~ 601 (914)
..|++ |+++..+. +.++.+++. +..+...++.. +.++....++. +++-....-+.|.++..+++|..++..
T Consensus 381 mqwvp~sdvivaqn~-dnl~iwyn~d~peqvt~~kikgd--v~~l~r~~~kteviv~e~takvayeld~~~iefgaaid~ 457 (1636)
T KOG3616|consen 381 MQWVPGSDVIVAQNG-DNLCIWYNIDAPEQVTMFKIKGD--VEALERDADKTEVIVMEGTAKVAYELDEGLIEFGAAIDD 457 (1636)
T ss_pred heeccCcceEEecCC-CceEEEecCCcchhheeeEeccc--chhhhcCCCceeEEEeecceeEEEEecCcceeccccccc
Confidence 34665 56655444 556665533 33333333322 22222233332 333344455678999999999999988
Q ss_pred cCHHHHhhhcCCCCcchHHHHHHHHHhCCChhhhhhcccCcccceeeecccCCHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 002511 602 GDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMST 681 (914)
Q Consensus 602 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~w~~la~~al~~ 681 (914)
++|..|...| +...+-. +...+|..||++|+..
T Consensus 458 ~df~ra~afl---------------es~~~~~--------------------------------da~amw~~laelale~ 490 (1636)
T KOG3616|consen 458 GDFDRATAFL---------------ESLEMGP--------------------------------DAEAMWIRLAELALEA 490 (1636)
T ss_pred CchHHHHHHH---------------HhhccCc--------------------------------cHHHHHHHHHHHHHHh
Confidence 8888775443 3332211 2246899999999999
Q ss_pred CChhhHHHHHHHcCCcchhHHHHHhcCCHH------------HHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHC
Q 002511 682 GKLEMAEGCMKQAMDLSGLLLLYSSLGDAE------------GISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVES 749 (914)
Q Consensus 682 ~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~------------~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~ 749 (914)
|++-+|++||...+|..++.+|+-...-.+ -.+-.|.+|....++.+|..+|+..++.++|+-||...
T Consensus 491 ~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~l 570 (1636)
T KOG3616|consen 491 GNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQEL 570 (1636)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999999999887533222 23456778888899999999999999999999999999
Q ss_pred CCchHHHHHHHhcCCChHHHHHHHHHHhhhhcC--hhhhhhcC
Q 002511 750 NRIPEAALMARSYLPSKVSEIVAIWRKDLQKVN--PKAAESLA 790 (914)
Q Consensus 750 ~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~--~~~a~~l~ 790 (914)
.+|+||+.+|+..+......+...|-++|.... .|+|+.-.
T Consensus 571 hkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~ 613 (1636)
T KOG3616|consen 571 HKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKE 613 (1636)
T ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence 999999999999999888888888888887654 34444333
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=2.2e-13 Score=145.23 Aligned_cols=289 Identities=15% Similarity=0.184 Sum_probs=187.8
Q ss_pred hhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE-CCCEEEEEE
Q 002511 7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRVYN 85 (914)
Q Consensus 7 ~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~vwd 85 (914)
...++......-..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||++++++. ..+.+.++|
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 344454444434557899999999999999999999999999999998655 468899999999999876 489999999
Q ss_pred CCCCeeeEEEecC-------CCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCE
Q 002511 86 YNTMDKVKVFEAH-------TDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (914)
Q Consensus 86 ~~t~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (914)
.++.+.++.+... ...+..+..+|..+.++..-. .+.|.+.|......................|+| ++++
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry 185 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRY 185 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccce
Confidence 9999999887632 346788888998886665555 488888887765344333333445677889999 7777
Q ss_pred EEE-EeCCCcEEEEECCCCCCcEEEec----CCCCee-------EEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEe
Q 002511 158 FAS-ASLDRTIKIWNLGSPDPNFTLDA----HQKGVN-------CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL 225 (914)
Q Consensus 158 l~~-~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~-------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (914)
+++ ...+..|-++|..+++....+.. |..++. ...|...+.....++.-....+.+||..+.+.++++
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 655 45677899999988766555432 222222 223443333323333333446667899999999999
Q ss_pred cCcccceEEEEEeCCCCEEEEE----ECCCeEEEEeCCCceeEEEeecCC-ccEEEEEEecCCCEEEEEecC--CeEEEE
Q 002511 226 EGHTHNVSAVCFHPELPIIITG----SEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDE--GTIMVK 298 (914)
Q Consensus 226 ~~~~~~v~~i~~~~~~~~l~~~----~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d--g~i~i~ 298 (914)
.....+ ..+..||+++++.+. ...+.|.++|..+.+...++.... .++..+.|+++|+.+.++..+ |.|.++
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 877666 788999999999988 345799999999998887776432 358999999999977665433 346653
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=7.2e-15 Score=162.55 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=158.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE-CCCEEEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA-DDMFIRV 83 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~v 83 (914)
.+.+..|...+.+++|||||++|+.++.+ ..|++||+.+++... +....+....++|+|||++|++++ .+|.+.|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEE
Confidence 34567788899999999999999987653 369999998875432 222233345789999999998865 5776554
Q ss_pred --EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEE-cCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE
Q 002511 84 --YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 84 --wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (914)
||+.+++ ...+..+...+....|+|||+.|+.++ .+|...||+++........+ .+.. .+..|+| +++.++.
T Consensus 275 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~Sp-DG~~ia~ 349 (429)
T PRK01742 275 YVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISA-DGKTLVM 349 (429)
T ss_pred EEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCC-CCCEEEE
Confidence 5666655 445556677788999999999877655 56778888765321222222 3333 4578999 8888888
Q ss_pred EeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC--CCCceEEEecCcccceEEEEEe
Q 002511 161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFH 238 (914)
Q Consensus 161 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~ 238 (914)
++.++ +.+||+.+++....... .....+.|+|++. +++.++.++.+.+|.+ .+|..+..+..|.+.+...+|+
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~--~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGI--MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCC--EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 77755 56699988765432222 2235678999887 7888888888887775 3578888888888888999999
Q ss_pred CC
Q 002511 239 PE 240 (914)
Q Consensus 239 ~~ 240 (914)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=3.2e-16 Score=167.45 Aligned_cols=237 Identities=22% Similarity=0.351 Sum_probs=185.7
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
.++.+.+|-..|.|+.|...|.++++|++|..++||...++.++....+|.+.|+.++.+.++.++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 44556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEE---Ee-cCCCCeeEEEEeeCCCcCEEEE
Q 002511 129 EKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT---LD-AHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 129 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
..+ .+..++.+|++.|++++|+| +.+.+.||++++||.+-.-.+.. +. .....+.++.+...+. -+++
T Consensus 262 ~~~-~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~--~f~T 333 (1113)
T KOG0644|consen 262 PDG-APVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD--RFLT 333 (1113)
T ss_pred CCC-chHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc--cccc
Confidence 998 88889999999999999999 23778899999999871111110 11 1224455666666665 4889
Q ss_pred EEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCC-CEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCC
Q 002511 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL-PIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
++.++.-..|.+..-. .+...+.-+..+.+. .+.++.-.+-.+++|++.+|.+.+.+..+...+..+.++|-.
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 9999888777654211 111112222222222 356666678889999999999999999999999999999987
Q ss_pred CEEE-EEecCCeEEEEc
Q 002511 284 RRIV-IGYDEGTIMVKI 299 (914)
Q Consensus 284 ~~l~-~~~~dg~i~i~~ 299 (914)
..++ .++.||...||.
T Consensus 408 ~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred cHhhhhccCCCceEeee
Confidence 7665 577888888873
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=6.7e-13 Score=141.45 Aligned_cols=257 Identities=15% Similarity=0.117 Sum_probs=166.1
Q ss_pred CEEE-EEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEE
Q 002511 28 PWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (914)
Q Consensus 28 ~~la-~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~ 106 (914)
++++ +-..+|.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+..+.... ...+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEE
Confidence 4444 44558999999999999999998765544567899999999999999999999999999999987544 468899
Q ss_pred EeCCCCEEEEEE-cCCeEEEEECCCCceEEEEeec------CcccEEEEEEccCCCCEEEEEeC-CCcEEEEECCCCCCc
Q 002511 107 VHPTLPYVLSSS-DDMLIKLWDWEKGWMCTQIFEG------HSHYVMQVTFNPKDTNTFASASL-DRTIKIWNLGSPDPN 178 (914)
Q Consensus 107 ~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~ 178 (914)
+|+||++++++. ..+.+.++|.++......+..+ ...++.++..+| ....++..-. .+.|.+.|....++.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccccc
Confidence 999999998765 6899999999987443333221 234677888888 5665555544 588888898776544
Q ss_pred EE-EecCCCCeeEEEEeeCCCcCEEEE-EEcCCeEEEEECCCCceEEEec----CcccceEEE-------EE--eCCCCE
Q 002511 179 FT-LDAHQKGVNCVDYFTGGDKPYLIT-GSDDHTAKVWDYQTKSCVQTLE----GHTHNVSAV-------CF--HPELPI 243 (914)
Q Consensus 179 ~~-~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i-------~~--~~~~~~ 243 (914)
.. ............|.|+++ |+++ ...++.|.++|..+++.+..+. .|..++..+ .| ...+..
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgr--y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGR--YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSS--EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ceeeecccccccccccCcccc--eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 32 223445567788988876 5554 4567899999999887766543 233333322 12 112222
Q ss_pred EEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEE
Q 002511 244 IITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (914)
.++.-....+.+||..+++.+.++....++ .-+..+|+++++.+.
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd 286 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEee
Confidence 222222336677899999999999887666 778889999999887
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=152.42 Aligned_cols=231 Identities=11% Similarity=0.132 Sum_probs=192.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (914)
......+.++.+|..|+.|+..|.|-.+|+.+++....+.. ...|..+.|-.+.++++++- ...++|||-... ..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~Gt--ElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGT--ELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCc--EEe
Confidence 34557789999999999999999999999999998888764 45689999998888777764 578999996543 344
Q ss_pred EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 137 IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 137 ~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
.+..| ..|..+.|.| ..-+|++++..|.++.-|+..|+.+..+....+.+..++-+|-+. .+-+|..+|+|.+|..
T Consensus 205 Clk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLWSP 280 (545)
T ss_pred ehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc--eEEEcCCCceEEecCC
Confidence 44444 4588999999 778899999999999999999999998888888888888888765 7889999999999999
Q ss_pred CCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
...+++..+-.|.++|.+|++.++|.+++|.+.|..++|||+++...+.++.. .-+...+++|..| +.+.+....+.
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeee
Confidence 99998888888999999999999999999999999999999999887776665 3456778887665 33344445566
Q ss_pred EE
Q 002511 297 VK 298 (914)
Q Consensus 297 i~ 298 (914)
+|
T Consensus 358 iw 359 (545)
T KOG1272|consen 358 IW 359 (545)
T ss_pred ee
Confidence 66
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.61 E-value=1.2e-13 Score=154.39 Aligned_cols=256 Identities=15% Similarity=0.185 Sum_probs=180.8
Q ss_pred cchhhhhcccCCCCEEEEEEcCCC-CEEEEEecCCcEEEEeCCCC-------ceeEEeeecCCCeEEEEEecCCCEEEEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSE-PWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAG 75 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~-~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g 75 (914)
+..+..++..|+..|..++.++.. .++++|+.||+|++||...- +...++.....++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 445667788899999999998865 99999999999999997642 2223344457789999999999999999
Q ss_pred ECCCEEEEEECCCC--ee-----eEEEecC--CCCEEEEEEeCC-CC-EEEEEEcCCeEEEEECCCCceEE-EEeecCcc
Q 002511 76 ADDMFIRVYNYNTM--DK-----VKVFEAH--TDYIRCVAVHPT-LP-YVLSSSDDMLIKLWDWEKGWMCT-QIFEGHSH 143 (914)
Q Consensus 76 ~~dg~i~vwd~~t~--~~-----~~~~~~~--~~~i~~~~~s~~-~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 143 (914)
+.||.|++.+++-. +. ......+ ...|..-+|... +. .++.+...+.|..||++...... .......+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 99999999988752 11 1111222 223344444432 23 67788888999999998652111 11223347
Q ss_pred cEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe-cCCCCeeEEEEeeCCC--cCEEEEEE-cCCeEEEEECCCC
Q 002511 144 YVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGD--KPYLITGS-DDHTAKVWDYQTK 219 (914)
Q Consensus 144 ~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~l~~~~-~dg~i~iwd~~~~ 219 (914)
.|++++.+| .++.+++|+..|.+.+||++-+.++..+. ++..++..+..+|-.. ...+.+++ ..+.|.+|++.+|
T Consensus 1197 ~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 799999999 88899999999999999999888877664 3446777777776544 32333444 5688999999998
Q ss_pred ceEEEecCc-----------------cc--ceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 220 SCVQTLEGH-----------------TH--NVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 220 ~~~~~~~~~-----------------~~--~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
.+-.++... .. .....++...+.++++|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 776655422 01 111223333456899999999999999754
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=1.1e-13 Score=133.88 Aligned_cols=245 Identities=18% Similarity=0.299 Sum_probs=176.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-----eeEEeeecC------------CCeEEEEEecCCC--EEEE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTE------------LPVRSAKFVARKQ--WVVA 74 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~s~~~~--~l~~ 74 (914)
..+-|.++.|..+|.+||+|..+|.|.+|.-.... ....+..|+ ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999743321 223344443 2588899998764 5677
Q ss_pred EECCCEEEEEECCCCee-----------------------------------eEEE-ecCCCCEEEEEEeCCCCEEEEEE
Q 002511 75 GADDMFIRVYNYNTMDK-----------------------------------VKVF-EAHTDYIRCVAVHPTLPYVLSSS 118 (914)
Q Consensus 75 g~~dg~i~vwd~~t~~~-----------------------------------~~~~-~~~~~~i~~~~~s~~~~~l~~~~ 118 (914)
.+.|.+|++|.+..... .+.+ .+|.-.|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 78899999998743211 0111 2577789999999999877765
Q ss_pred cCCeEEEEECCCCceEEEEee--cC-----cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCc----EEE------
Q 002511 119 DDMLIKLWDWEKGWMCTQIFE--GH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN----FTL------ 181 (914)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~~--~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~------ 181 (914)
+|-.|-+|+++-......+.. .+ ..-|++..|+|...+.|+-.+..|+|++.|++..... ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 567899999875434433332 22 2458899999988999999999999999999853211 111
Q ss_pred ------ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC-CCceEEEecCccc------------c---eEEEEEeC
Q 002511 182 ------DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-TKSCVQTLEGHTH------------N---VSAVCFHP 239 (914)
Q Consensus 182 ------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~------------~---v~~i~~~~ 239 (914)
..--..|..+.|+++|+ |+++-. --+|++||+. ..+++.++..|.. . -..++|+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGr--yilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGR--YILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCc--EEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 11224577899999887 666544 4689999994 4566666665532 1 23578999
Q ss_pred CCCEEEEEECCCeEEEEeCCCce
Q 002511 240 ELPIIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 240 ~~~~l~~~~~dg~v~iwd~~~~~ 262 (914)
++.++++|+....+++++...|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 99999999999999999976654
No 226
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=9.7e-15 Score=145.72 Aligned_cols=195 Identities=16% Similarity=0.218 Sum_probs=152.4
Q ss_pred EEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEe-e
Q 002511 61 RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIF-E 139 (914)
Q Consensus 61 ~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 139 (914)
.+++|+++|..|++|+.||.+|||++.+...+.....|...|.++.|+|||+.|++.+.| ...||+.+++..+...- .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 779999999999999999999999998888888888899999999999999999999999 89999999983222222 2
Q ss_pred cCcccEEEEEEccCCC---CE--EEEEeCCCcEEEEECCCCC-----CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC
Q 002511 140 GHSHYVMQVTFNPKDT---NT--FASASLDRTIKIWNLGSPD-----PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH 209 (914)
Q Consensus 140 ~~~~~i~~~~~~p~~~---~~--l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 209 (914)
...-....+.|+. ++ .+ ++.....+.|+.|++.... +.++.......|.+++.+.+|+ +++.|+.+|
T Consensus 227 ~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~AlGT~dG 303 (398)
T KOG0771|consen 227 SKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLALGTMDG 303 (398)
T ss_pred ccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEEeccCC
Confidence 2333456677776 44 22 3333345566666653322 1222233456799999999988 899999999
Q ss_pred eEEEEECCCCceEEEe-cCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC
Q 002511 210 TAKVWDYQTKSCVQTL-EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~ 259 (914)
.|.|++..+.++++.+ +.|...|+.+.|+|+.+++++.+.+....+..+.
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999888776655 4688899999999999999999888888877654
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-13 Score=152.04 Aligned_cols=262 Identities=13% Similarity=0.158 Sum_probs=188.6
Q ss_pred EeCCCCceeEEeeecCCCeEEEEEecCC-CEEEEEECCCEEEEEECCCC-------eeeEEEecCCCCEEEEEEeCCCCE
Q 002511 42 WNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTM-------DKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 42 wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~t~-------~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
|+ ..|..+..+..|...|..++.++.. .++++||.||+|++||.... +...++..-...+.++...+.+..
T Consensus 1034 W~-p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WN-PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CC-ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 66 3677888888899988888887765 99999999999999998632 223334445678999999999999
Q ss_pred EEEEEcCCeEEEEECCCC--ceE----EEEeec-CcccE-EEEEEccCCCC-EEEEEeCCCcEEEEECCCCCCcEEE--e
Q 002511 114 VLSSSDDMLIKLWDWEKG--WMC----TQIFEG-HSHYV-MQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTL--D 182 (914)
Q Consensus 114 l~~~~~dg~i~iwd~~~~--~~~----~~~~~~-~~~~i-~~~~~~p~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~--~ 182 (914)
+++++.||.|.+.+++.. ... ...... ..+.+ ..-+|...... .++.+...+.|..||+++.....++ .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998752 111 111111 12333 33344443444 7888888999999999887655544 3
Q ss_pred cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-CcccceEEEEEeCCC---CEEEEE-E-CCCeEEEE
Q 002511 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPEL---PIIITG-S-EDGTVRIW 256 (914)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~---~~l~~~-~-~dg~v~iw 256 (914)
...+.|++++.+|.++ ++++|+..|.+.+||++-+.++.... ++..++..++.+|-. ...+++ + ..+.|.+|
T Consensus 1193 ~~hG~vTSi~idp~~~--WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCN--WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccccceeEEEecCCce--EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4568899999999887 99999999999999999888877664 234567777777633 344444 3 56789999
Q ss_pred eCCCceeEEEeecCC-----------------c--cEEEEEEecCCCEEEEEecCCeEEEEcCCCccee
Q 002511 257 HATTYRLENTLNYGL-----------------E--RVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVA 306 (914)
Q Consensus 257 d~~~~~~~~~~~~~~-----------------~--~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~ 306 (914)
++.+|....++.... . .....++...+..+.+|+.|+.|+.|....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999987666554331 1 1222334445678899999999999976665554
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.4e-13 Score=135.78 Aligned_cols=260 Identities=16% Similarity=0.265 Sum_probs=193.4
Q ss_pred cCCCCEEEEEEcCCCC-EEEEEe-cCCcEEEEeCCCCceeEEe------eecCCCeEEEEEecCCCEEEEEECCCEEEEE
Q 002511 13 QRSERVKSVDLHPSEP-WILASL-YSGTVCIWNYQSQTMAKSF------EVTELPVRSAKFVARKQWVVAGADDMFIRVY 84 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~-~la~~~-~~g~v~iwd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vw 84 (914)
....+|++++|--+++ -++.+. .+..+..+.+........+ .....+|..++.. ..+|++|..+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 4556788899887665 233333 5666777776665444332 3345667666653 3478888999999999
Q ss_pred ECCCCe----eeEEEecCCCCEEEEEEeCCCCEEE-EEEcC--CeEEEEECCCCceEEEEeecC-----------cccEE
Q 002511 85 NYNTMD----KVKVFEAHTDYIRCVAVHPTLPYVL-SSSDD--MLIKLWDWEKGWMCTQIFEGH-----------SHYVM 146 (914)
Q Consensus 85 d~~t~~----~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~-----------~~~i~ 146 (914)
..+.+. ++..+..+ ..+..+.-++..++++ +|+.. ..+.+||+.+. .+++... .-.++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeec
Confidence 988443 23333333 3566677777666555 58877 78999999876 3333322 23577
Q ss_pred EEEEccCC--CCEEEEEeCCCcEEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE
Q 002511 147 QVTFNPKD--TNTFASASLDRTIKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ 223 (914)
Q Consensus 147 ~~~~~p~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 223 (914)
++.|.| + ...|++++.-+.+++||.+.+ +|+..+.....++.++...|+++ ++++|..-|.+..||++.+..+.
T Consensus 207 di~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 207 DIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred cceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccchhheecccCceeec
Confidence 888988 5 789999999999999999865 47788888899999999999988 79999999999999999988876
Q ss_pred E-ecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecC
Q 002511 224 T-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKS 282 (914)
Q Consensus 224 ~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 282 (914)
. +.+..+.|+++..+|.+++++++|-|..|||+|+.+.+++...-.. ..++++-+.++
T Consensus 284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-s~lt~il~~~~ 342 (412)
T KOG3881|consen 284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDD 342 (412)
T ss_pred cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh-ccccEEEecCC
Confidence 6 8888999999999999999999999999999999986665443222 44556655444
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.3e-14 Score=144.83 Aligned_cols=195 Identities=15% Similarity=0.130 Sum_probs=150.8
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe--
Q 002511 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-- 96 (914)
Q Consensus 19 ~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~-- 96 (914)
.+++|+++|..|++|+.||+++||++.+...+.....|...|.++.|+|||++|++-+.| ..+||+.++|..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999998888888888899999999999999999999999 89999999997666554
Q ss_pred cCCCCEEEEEEeCCC---CEEEE--EEcCCeEEEEECCCCce----EEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 97 AHTDYIRCVAVHPTL---PYVLS--SSDDMLIKLWDWEKGWM----CTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~---~~l~~--~~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
........+.|+.++ .+.+. -..-+.|..|++..... ...........|.+++.++ ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 223346677888776 33222 23335566555432111 1111122234699999999 99999999999999
Q ss_pred EEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC
Q 002511 168 KIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 168 ~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (914)
.+++..+-+..... +.|...|+.+.|+|+.+ ++++.+.+....+..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr--~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR--YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcC--cccccccCCceeEEEEe
Confidence 99998776655444 57889999999999887 68888888777776654
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.2e-13 Score=132.68 Aligned_cols=189 Identities=16% Similarity=0.277 Sum_probs=141.1
Q ss_pred CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC----
Q 002511 100 DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP---- 175 (914)
Q Consensus 100 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~---- 175 (914)
..++.++|++.-..++++..|-.|++|+-... ............|++++|-|.....|++|+. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 35788999997667889999999999997763 3333434455679999999987888888886 55889976421
Q ss_pred CC----------cEEEecCCCCeeEEEEeeCCCcCEEEEEE-cCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEE
Q 002511 176 DP----------NFTLDAHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII 244 (914)
Q Consensus 176 ~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 244 (914)
.+ +..-.+| .+|+++.|.++|. .+++++ .+..|.|||..++..+.......+.++-+.|||||.+|
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1122333 6899999999987 466655 46889999999988766554456678999999999999
Q ss_pred EEEECCCeEEEEeCC-CceeEEEeecCCccEEEEEEecCCCEEEEEecCCe
Q 002511 245 ITGSEDGTVRIWHAT-TYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGT 294 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 294 (914)
++++-|+..++|... +.....-. ...++|...+|+|.|++|...+....
T Consensus 254 faAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred EEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCc
Confidence 999999999999544 33333333 33469999999999998877665433
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.6e-13 Score=138.94 Aligned_cols=276 Identities=12% Similarity=0.155 Sum_probs=204.3
Q ss_pred cCCCCEEEEEEcCCCCEEE-EEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 13 QRSERVKSVDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la-~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
+|...-+.|..+|||+|++ +|.+--.|++||+.+-.+...-......|.-.-.+-|-..++.-..|..|-+..-- |.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Cee
Confidence 4788899999999999765 57778899999987765443332234566666667777777777788888665432 221
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
. .+. -+..-+.++++.-.--|++++....|+-++++.| .....+....+.+.++..++ -..+|++|+.+|.|.+||
T Consensus 128 y-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 128 Y-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWD 203 (703)
T ss_pred e-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccccceeeeecC-ccceEEecccCceEEEec
Confidence 1 111 1223355666654444666666677999999998 66677777778899999999 788999999999999999
Q ss_pred CCCCCCcEEEe------cCCC-----CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-CcccceEEEEEeC
Q 002511 172 LGSPDPNFTLD------AHQK-----GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHP 239 (914)
Q Consensus 172 ~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~ 239 (914)
.+....+.++. .|.+ .|+++.|+.+|- .+++|+..|.+.|||+++.+++..-. +...+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL--~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL--HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCce--eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence 98877665553 2233 388999987654 69999999999999999988765443 2345788999977
Q ss_pred C--CCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 240 E--LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 240 ~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
. ++.+++.. ...++|||-.+|+....+... ..+..+|+-|++.++.++.+++.+..
T Consensus 282 ~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 5 45666654 458999999999988877765 45999999999999999988877654
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.8e-13 Score=145.08 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=161.3
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC---CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..|.+||...... +.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++..... ...+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCE
Confidence 3699999765543 445557778999999999999987643 457999999887643322 23334557899999998
Q ss_pred EEEE-EcCC--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCC-Cc--EEEEECCCCCCcEEEecCCCC
Q 002511 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD-RT--IKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|+.. +.+| .|++||+.++ ...+.. .+...+....|+| +++.|+..+.+ +. |.++|+.++.. ..+......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg-~~~~lt-~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~ 332 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG-QIRQVT-DGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ 332 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC-CEEEcc-CCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 8865 3344 5899999887 444443 3345678899999 78877766653 44 55557766543 344434445
Q ss_pred eeEEEEeeCCCcCEEEEEEcC---CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCe---EEEEeCCCc
Q 002511 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT---VRIWHATTY 261 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~---v~iwd~~~~ 261 (914)
.....|+|+++ +++..+.+ ..|.+||+.++... .+... .......|+|||+.|+.++.++. +.++++ +|
T Consensus 333 ~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 333 NQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred ccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 56788999987 56554433 35888999877643 33322 22346789999999999887764 677776 46
Q ss_pred eeEEEeecCCccEEEEEEec
Q 002511 262 RLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~ 281 (914)
+....+..+.+.+...+|+|
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCeEECccCCCCcCCcccCC
Confidence 66666766667788888887
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-14 Score=146.78 Aligned_cols=255 Identities=16% Similarity=0.217 Sum_probs=193.4
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE-ecCCCCEEEEEEeCC--CCEEEEEEcCCeEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPT--LPYVLSSSDDMLIKL 125 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~-~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i 125 (914)
+...+..|.+.|..+.|+..|..|++|++|..|.+||+.+++....+ .+|...|....|-|. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 44567789999999999999999999999999999999998887766 478888888888874 357999999999999
Q ss_pred EECCCCceE--EEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe---cCCC---CeeEEEEeeCC
Q 002511 126 WDWEKGWMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD---AHQK---GVNCVDYFTGG 197 (914)
Q Consensus 126 wd~~~~~~~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~---~v~~~~~~~~~ 197 (914)
-.+.....+ ...+..|.++|.-++.-|.+...|.+++.|+.+.-+|++.+.+...+. .+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876543222 345667999999999999889999999999999999999877654442 2223 45677777766
Q ss_pred CcCEEEEEEcCCeEEEEECCCCc------eEEEec------CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce---
Q 002511 198 DKPYLITGSDDHTAKVWDYQTKS------CVQTLE------GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--- 262 (914)
Q Consensus 198 ~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~------~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--- 262 (914)
.. .+++++.|..+++||.+.-. .+..+. .....|++++++.++.-+++.-.|-.|+++....+.
T Consensus 294 t~-~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TN-EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred cc-ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 79999999999999986422 122222 223469999999877777777778899999543221
Q ss_pred ---------eEE-EeecCC--ccEEEEE-EecCCCEEEEEecCCeEEEEcCCCcc
Q 002511 263 ---------LEN-TLNYGL--ERVWAIG-YMKSSRRIVIGYDEGTIMVKIGREEP 304 (914)
Q Consensus 263 ---------~~~-~~~~~~--~~v~~i~-~~~~~~~l~~~~~dg~i~i~~~~~~~ 304 (914)
.+. .+++|. ..|..+- |-|...++++|++-|.|.||..+...
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 111 244553 3455665 56788999999999999999655443
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.57 E-value=3e-12 Score=130.76 Aligned_cols=271 Identities=12% Similarity=0.122 Sum_probs=186.8
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCC-----------
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM----------- 79 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----------- 79 (914)
+....-++..++|||.|.+|++....| |.+|....+..+..+. | ..|..+.|||.+++|.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCc
Confidence 333556789999999999999876554 8999988877555554 3 3589999999999999865433
Q ss_pred ----EEEEEECCCCeeeEEEecCCCC--EE-EEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeec-CcccEEEEEEc
Q 002511 80 ----FIRVYNYNTMDKVKVFEAHTDY--IR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFN 151 (914)
Q Consensus 80 ----~i~vwd~~t~~~~~~~~~~~~~--i~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~ 151 (914)
.+.+||..+|..+..+.....+ .. -+.|+.+.++++-.. ...++|+++ ++......+.. ....|....|+
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEec
Confidence 4999999999999998866655 44 688999888776443 346899997 33122211111 12457888899
Q ss_pred cC-CCCEEEE-----EeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEE-----------EcCCeEEEE
Q 002511 152 PK-DTNTFAS-----ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITG-----------SDDHTAKVW 214 (914)
Q Consensus 152 p~-~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-----------~~dg~i~iw 214 (914)
|. ++..|+. .+..+++++|.+..++.+.+..-.+..-..+.|.+.|+ ++++- .....++|+
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGK--YLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCc--eEEEEEEEeeecccceeccceEEEE
Confidence 84 3334443 45578899999987666555443333345677877776 44331 123568888
Q ss_pred ECCCCceEEEecCcccceEEEEEeCCCCEEEEEE--CCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecC
Q 002511 215 DYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 215 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (914)
+++...+ .......++|...+|.|.++.+++.+ .+..+.++|++.. +...+ +...=..+.|+|.++++++++-+
T Consensus 261 ~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 261 RITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred eeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCC
Confidence 8874433 33325678999999999988776554 7788999998855 33333 33445678899999998886543
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.5e-13 Score=147.32 Aligned_cols=235 Identities=13% Similarity=0.031 Sum_probs=157.0
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..|.++|. .+...+.+..+...+.+.+|+|||+.|+..+.. ..|.+||+.+++.... ....+.+.+..|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 46778886 444545566677889999999999999987642 4699999998876443 333455678999999998
Q ss_pred EE-EEEcCCeEEEEE--CCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CCcEEEEEC--CCCCCcEEEecCCCC
Q 002511 114 VL-SSSDDMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRTIKIWNL--GSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~ 187 (914)
|+ +.+.+|...||. ..++ . ...+..+........|+| |++.++..+. +|...+|.+ .++.. ..+......
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-G-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-C-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 87 456677766665 4444 2 333444555567788999 7777765553 456666654 44432 222222333
Q ss_pred eeEEEEeeCCCcCEEEEEEcCC---eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCC---eEEEEeCCCc
Q 002511 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (914)
.....|+|+|+ +|+..+.++ .|.+||+.++....... . .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 330 ~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 330 NTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred cCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 44678999987 566655443 69999998876543322 2 2346789999999888877544 3666666 46
Q ss_pred eeEEEeecCCccEEEEEEecC
Q 002511 262 RLENTLNYGLERVWAIGYMKS 282 (914)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~~ 282 (914)
+....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 666666555566777788774
No 236
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=1.5e-08 Score=120.13 Aligned_cols=234 Identities=12% Similarity=0.144 Sum_probs=151.0
Q ss_pred CCeEEEEEecCCCEEEEEECCC----EEEEEECCCCe---eeEEEe-----cCCCCEEEEEEeCCCCEEEEEEcCCeEEE
Q 002511 58 LPVRSAKFVARKQWVVAGADDM----FIRVYNYNTMD---KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKL 125 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg----~i~vwd~~t~~---~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 125 (914)
..+...+|.+..+.+.+..... .|.+-...... .+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 3566667777665544433322 23333322222 222222 34568999999999999999999999999
Q ss_pred E----ECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC---------------C--------CCCc
Q 002511 126 W----DWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG---------------S--------PDPN 178 (914)
Q Consensus 126 w----d~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~---------------~--------~~~~ 178 (914)
. +..+. .......-...|.+++||| |..+++..+.+++|.+.+.. . |+.-
T Consensus 102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDED--EIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCc--eeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 55443 3444445567799999999 89999999999998877531 0 0111
Q ss_pred EEEec------------------------CCCCeeEEEEeeCCCcCEEEEEEc---C---CeEEEEECCCCceEEEecCc
Q 002511 179 FTLDA------------------------HQKGVNCVDYFTGGDKPYLITGSD---D---HTAKVWDYQTKSCVQTLEGH 228 (914)
Q Consensus 179 ~~~~~------------------------~~~~v~~~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~ 228 (914)
.++.+ ....-..++|- |++.|+++.+- . ..+++|+-. |....+-..-
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 11100 11223345564 44448888774 2 579999954 6654444433
Q ss_pred ccceEEEEEeCCCCEEEEEEC---CCeEEEEeCCCceeEEEeec----CCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 229 THNVSAVCFHPELPIIITGSE---DGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
.+--.+++|.|.|++|++... ...|.+|. ++|-....+.. ....|..+.|++++..||+...+. |.+|.
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 333457899999999998764 35688888 44555444443 346799999999999999988665 77774
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.5e-12 Score=144.44 Aligned_cols=234 Identities=13% Similarity=0.050 Sum_probs=160.2
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC---CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..|.+||... ...+.+..+...+.+.+|+|||+.|+..+. ...|++||+.+++... +....+...+..|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999754 444556667788999999999999998874 3479999998876543 3334445568899999998
Q ss_pred EE-EEEcCC--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CCc--EEEEECCCCCCcEEEecCCCC
Q 002511 114 VL-SSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DRT--IKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|+ +.+.+| .|++||+.++ ...+ +..+.......+|+| +++.++.++. +|. |.++++.+++.. .+......
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g-~~~~-lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~ 337 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSR-QLTR-LTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNY 337 (433)
T ss_pred EEEEEeCCCCceEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCC
Confidence 76 445555 5999999887 3333 344545556789999 7777776653 444 667777666533 33323334
Q ss_pred eeEEEEeeCCCcCEEEEEEcCC---eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC---CeEEEEeCCCc
Q 002511 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTY 261 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~ 261 (914)
....+|+|+++ +++..+.++ .|.+||+.++... .+. +........|+|+|++|+..+.+ +.|.++++. +
T Consensus 338 ~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g 412 (433)
T PRK04922 338 NARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-G 412 (433)
T ss_pred ccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 45789999988 565544332 6999999877654 333 22244567999999988877653 468888875 4
Q ss_pred eeEEEeecCCccEEEEEEec
Q 002511 262 RLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~~~ 281 (914)
.....+..+.+.+...+|+|
T Consensus 413 ~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CceEEcccCCCCCCCCccCC
Confidence 45555555556677777876
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=3.4e-12 Score=141.87 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=161.5
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC---CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+..|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378899974 4455667778889999999999999988764 468999999887653 44456667788999999998
Q ss_pred EE-EEEcCCe--EEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCCCcEEEecCCCC
Q 002511 114 VL-SSSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|+ +.+.++. |.+||+.++ ... .+..+........|+| +++.++..+. +| .|.++|+.++.. ..+......
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~-~~~-~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSG-TTT-RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCC-ceE-EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 76 4455554 777888876 333 3445556667889999 7777776653 33 688889876554 344434555
Q ss_pred eeEEEEeeCCCcCEEEEEEcC---CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC------CeEEEEeC
Q 002511 188 VNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHA 258 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~v~iwd~ 258 (914)
+....|+|+++ .|+....+ ..|.+||+.++.. ..+. ....+....|+|||+.|+..+.+ ..+.++|+
T Consensus 336 ~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 336 YSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 67788999988 56555432 3688889865443 3333 22346788999999988775543 25788887
Q ss_pred CCceeEEEeecCCccEEEEEEecC
Q 002511 259 TTYRLENTLNYGLERVWAIGYMKS 282 (914)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~ 282 (914)
..+.. ..+.. .+.+...+|+|-
T Consensus 412 ~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCce-EEccC-CCCccCcccCCC
Confidence 65544 34432 344566777663
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.1e-12 Score=144.54 Aligned_cols=222 Identities=10% Similarity=0.026 Sum_probs=154.3
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEec---CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCC--EEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~---~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~ 82 (914)
+.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445556678999999999999987543 3579999998876433 22333445678999999998865 3344 699
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
+||+.+++.... ..+...+....|+|||+.|+.++.+ + .|.++|+.++ ..... ..+........|+| +++.++
T Consensus 271 ~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-~~~~l-t~~~~~~~~~~~Sp-DG~~Ia 346 (429)
T PRK03629 271 VMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-APQRI-TWEGSQNQDADVSS-DGKFMV 346 (429)
T ss_pred EEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-CeEEe-ecCCCCccCEEECC-CCCEEE
Confidence 999988765444 3344567889999999998877764 3 4555577665 33322 33334456788999 788877
Q ss_pred EEeCC---CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe---EEEEECCCCceEEEecCcccceE
Q 002511 160 SASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT---AKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 160 ~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
..+.+ ..|.+||+.++... .+.. ........|+|+|. +|+.++.++. +.++++. |.....+.+|.+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~--~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGT--MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 421 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCC--EEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcC
Confidence 76543 35888999877533 3332 22234678999988 5777766653 6777874 666677777888888
Q ss_pred EEEEeCC
Q 002511 234 AVCFHPE 240 (914)
Q Consensus 234 ~i~~~~~ 240 (914)
..+|+|-
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 9999873
No 240
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=6.8e-12 Score=129.93 Aligned_cols=271 Identities=11% Similarity=0.097 Sum_probs=182.2
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE----------CCCEEEEE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA----------DDMFIRVY 84 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~----------~dg~i~vw 84 (914)
+..++..++|++|+++|.+. +..|.|++..++..+.+.... .+.++.|||-|.+|.+-- ....+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34478899999999888865 778999999888644444323 789999999999987631 13467899
Q ss_pred ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEE---------------
Q 002511 85 NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVT--------------- 149 (914)
Q Consensus 85 d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~--------------- 149 (914)
++.++.....+......-.+..|++|..+.+ --..+.+.+|++.+.......+ |...|..+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvP 187 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVP 187 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEcc
Confidence 9998655544443222225788888765332 2223457777766542222222 223344444
Q ss_pred -------------------------------------EccCCCCEEEEEeCC-----------CcEEEEECCCCCCcEEE
Q 002511 150 -------------------------------------FNPKDTNTFASASLD-----------RTIKIWNLGSPDPNFTL 181 (914)
Q Consensus 150 -------------------------------------~~p~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~ 181 (914)
|++....+|+..+.| .++++.++.+......
T Consensus 188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~- 266 (566)
T KOG2315|consen 188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP- 266 (566)
T ss_pred CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-
Confidence 444333333333221 2344444442222222
Q ss_pred ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC---CCeEEEEeC
Q 002511 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVRIWHA 258 (914)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~v~iwd~ 258 (914)
-...++|.++.|++++..--++-|..-..+.|||++ +.++..+. .++-.++-|+|.|++|+.+|- .|.|-+||+
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 234789999999999987455666777899999987 67776654 566778999999999988774 478999999
Q ss_pred CCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 259 TTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 259 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
.+.+++..+.... -+-+.|+|||.++++++..-.+++
T Consensus 344 ~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred cchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence 9988888777653 356789999999999998888877
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.4e-11 Score=124.80 Aligned_cols=319 Identities=15% Similarity=0.256 Sum_probs=200.5
Q ss_pred CCcEEEEeCCCCce-eEEeee--cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCC
Q 002511 36 SGTVCIWNYQSQTM-AKSFEV--TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (914)
Q Consensus 36 ~g~v~iwd~~~~~~-~~~~~~--~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~ 112 (914)
+-.+.+|+...... ...+.. ...+++..++|++|++++.+ .+..+.|++..++..+.+.... .+.++.|+|-|.
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~ 86 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGN 86 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeeccccc
Confidence 34588888654322 222332 14457888999999877776 4568999999888655444432 689999999999
Q ss_pred EEEEE-----Ec-----CCeEEEEECCCCceEEEEee-cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE
Q 002511 113 YVLSS-----SD-----DMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL 181 (914)
Q Consensus 113 ~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 181 (914)
+|.+= .. .-.+.+|+..++ .....+. ..... ++..|++ |.. +++--..+.+++|++.+.+... -
T Consensus 87 yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~-dEs-l~arlv~nev~f~~~~~f~~~~-~ 161 (566)
T KOG2315|consen 87 YLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSI-DES-LAARLVSNEVQFYDLGSFKTIQ-H 161 (566)
T ss_pred ccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-ccccccc-chh-hhhhhhcceEEEEecCCcccee-e
Confidence 88742 11 245779999985 3333222 22222 5788887 443 4443445789999998754332 2
Q ss_pred ecCCCCeeEEEEeeCCCcCEEEE-----EEcCCeEEEEECCCCce-----EEEecCcccceEEEEEeCCCCEEE-EEE--
Q 002511 182 DAHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSC-----VQTLEGHTHNVSAVCFHPELPIII-TGS-- 248 (914)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~-~~~-- 248 (914)
.-|...++...++|.+....+++ .+.-+.|+||.+.-... .++| ....-..+.|++-|.-|+ ..+
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastd 239 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTD 239 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEe
Confidence 34678899999999876656665 34456799998762211 1111 112234577888776322 222
Q ss_pred CC---------CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEE--ecCCeEEEEcCCCcceeEEcCCCcEEEE
Q 002511 249 ED---------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIG--YDEGTIMVKIGREEPVASMDNSGKIIWA 317 (914)
Q Consensus 249 ~d---------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~g~~~~~ 317 (914)
-| .++++.++......-.+. ..++|.++.|+|+|+-+++. ..-..+.| ++..++.++.
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvti----------fnlr~~~v~d 308 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTI----------FNLRGKPVFD 308 (566)
T ss_pred ecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEE----------EcCCCCEeEe
Confidence 22 358888877333333333 35899999999999877764 33334444 3333333321
Q ss_pred eeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc----CCcEEEEEeeccccccc---C
Q 002511 318 KHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSF---G 390 (914)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~---~ 390 (914)
+.. ..-..+-|||.|+++++++ .|.+-+|++...+.... .
T Consensus 309 ------------------f~e---------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 309 ------------------FPE---------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred ------------------CCC---------------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 111 2334788999999999887 58889998887543322 2
Q ss_pred ceeEEEEecCCcEEEEec
Q 002511 391 SALEFVWSSDGEYAVRES 408 (914)
Q Consensus 391 ~~~~~~~s~~~~~l~~~~ 408 (914)
..+-+.|+|||+++++++
T Consensus 356 ~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CceEEEEcCCCcEEEEEe
Confidence 346678889998877665
No 242
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=2.5e-11 Score=124.07 Aligned_cols=356 Identities=15% Similarity=0.244 Sum_probs=224.5
Q ss_pred EEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc
Q 002511 40 CIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD 119 (914)
Q Consensus 40 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 119 (914)
.+|+..+......+....-++..++|||.|.+|++....| |.+|....+..+..+. |. .|..+.|+|.+++|.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-cC-CceecccCcccceeeeecc
Confidence 3456555555555555677899999999999999876654 8899988877666665 43 5899999999999998654
Q ss_pred CC---------------eEEEEECCCCceEEEEeecCccc--EE-EEEEccCCCCEEEEEeCCCcEEEEECCCCCC-cEE
Q 002511 120 DM---------------LIKLWDWEKGWMCTQIFEGHSHY--VM-QVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFT 180 (914)
Q Consensus 120 dg---------------~i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~~~ 180 (914)
.+ .+.+||+.++ .+...+.....+ .+ -+.|+- +..+++-. -...++|+++ ++.. ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p 167 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHP 167 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCc-eeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCc
Confidence 33 4999999998 666666655444 33 566776 45555443 3457899997 3321 111
Q ss_pred Ee-cCCCCeeEEEEeeCCCcCEEEE-----EEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEE------
Q 002511 181 LD-AHQKGVNCVDYFTGGDKPYLIT-----GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS------ 248 (914)
Q Consensus 181 ~~-~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~------ 248 (914)
+. ....++....|+|.+++..|+. .+..+++++|.+..+..+.+..-....-..+.|.+.|.++++--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 1236678888999877666554 45678899999987777665544444445788999998776421
Q ss_pred -----CCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe--cCCeEEEEcCCCcceeEEcCCCcEEEEeeCc
Q 002511 249 -----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY--DEGTIMVKIGREEPVASMDNSGKIIWAKHNE 321 (914)
Q Consensus 249 -----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~ 321 (914)
....++|+++.... +.......++|...+|.|.++.+++.+ ....+.+ ++..|++.+.
T Consensus 248 nKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~----------~~lr~Nl~~~---- 312 (561)
T COG5354 248 NKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV----------FDLRGNLRFY---- 312 (561)
T ss_pred ccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceee----------cccccceEEe----
Confidence 12468888877333 222224468999999999998887754 3333332 2222222211
Q ss_pred EEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccccccCceeEEEE
Q 002511 322 IQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRNRSFGSALEFVW 397 (914)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~~~~~~~~~~~~ 397 (914)
.+ +..-..+.|||.++++++++ .|.+.+|
T Consensus 313 --------------~P---------------e~~rNT~~fsp~~r~il~agF~nl~gni~i~------------------ 345 (561)
T COG5354 313 --------------FP---------------EQKRNTIFFSPHERYILFAGFDNLQGNIEIF------------------ 345 (561)
T ss_pred --------------cC---------------CcccccccccCcccEEEEecCCccccceEEe------------------
Confidence 11 11223678999999998876 3455554
Q ss_pred ecCCcEEEEec-CCeEEEeccCcccceeeecCcccceeecCcEEEEEeC------C-eEEEEeccCCcEEEEEEcceeEE
Q 002511 398 SSDGEYAVRES-SSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSN------D-FICFYDWAECRLIRRIDVTVKNL 469 (914)
Q Consensus 398 s~~~~~l~~~~-~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~------~-~i~~~d~~~~~~i~~~~~~i~~v 469 (914)
++-|++.+++. ++ ...-.+.|+|+ ++++.+... | .+.+||+...... ....+
T Consensus 346 ~~~~rf~~~~~~~~-----------~n~s~~~wspd----~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----el~~~ 405 (561)
T COG5354 346 DPAGRFKVAGAFNG-----------LNTSYCDWSPD----GQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----ELTNI 405 (561)
T ss_pred ccCCceEEEEEeec-----------CCceEeeccCC----ceEEEecCCCcccccCcceEEEEecCchhh-----hhhhc
Confidence 44555444321 11 11111245555 554444322 1 6888887533322 45778
Q ss_pred EEcCCCCEEEEEeCC
Q 002511 470 YWADSGDLVAIASDT 484 (914)
Q Consensus 470 ~~s~dg~~la~~~~~ 484 (914)
.|.|.|+++.+.+..
T Consensus 406 ~W~p~~~~~ttsSs~ 420 (561)
T COG5354 406 TWDPSGQYVTTSSSC 420 (561)
T ss_pred cccCCcccceeeccC
Confidence 899988887766654
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=7e-13 Score=135.84 Aligned_cols=219 Identities=17% Similarity=0.290 Sum_probs=159.6
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeE----EeeecCCCeEEEEE-----ecCCCEEEEEECCCEEEEEECC
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAK----SFEVTELPVRSAKF-----VARKQWVVAGADDMFIRVYNYN 87 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~----~~~~~~~~v~~~~~-----s~~~~~l~~g~~dg~i~vwd~~ 87 (914)
.++....+-.|.+|+..- ...+++|++..+.... ...-......|-.| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 455666666777776643 4568999887532211 11111122334444 3456678899889999999876
Q ss_pred CCeeeEEEe----cCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCC--------------c-------------eEE
Q 002511 88 TMDKVKVFE----AHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKG--------------W-------------MCT 135 (914)
Q Consensus 88 t~~~~~~~~----~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~--------------~-------------~~~ 135 (914)
..+..+.+. .....++|+.|-|.+ ..++.+-.+|.+++||..-. . .+.
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 533222221 234679999999965 45667778999999975311 0 000
Q ss_pred EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 136 QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 136 ~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
..+....+.|...+|+| |+.+|++.+.||.++|||..+.+.+..++..-+...|++|+|+|+ ||++|+.|..|.||.
T Consensus 284 ~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWS 360 (636)
T ss_pred ceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCcc--EEEecCCcceEEEEE
Confidence 01112235788999999 999999999999999999998887777777889999999999998 999999999999999
Q ss_pred CCCCceEEEecCcccceEEEEEeC
Q 002511 216 YQTKSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 216 ~~~~~~~~~~~~~~~~v~~i~~~~ 239 (914)
+..++.+..-++|.++|+.++|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999999999999999999999984
No 244
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.51 E-value=7.5e-10 Score=112.10 Aligned_cols=181 Identities=14% Similarity=0.089 Sum_probs=128.4
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCceEEEEeec------Cc-----ccEEEE-EEccCCCCEEEEEeCCCcEEEEECCCC
Q 002511 108 HPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG------HS-----HYVMQV-TFNPKDTNTFASASLDRTIKIWNLGSP 175 (914)
Q Consensus 108 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~~i~~~-~~~p~~~~~l~~~~~dg~i~vwd~~~~ 175 (914)
+.||+.++.. .-|.|.+||..+. .+.+.-.+ .. .+..-+ .|++-++++++..|. |...+.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td-~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETD-SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcC-cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3466666543 3477888888775 22222111 00 001111 144556888888875 67777765444
Q ss_pred CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC-eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEE
Q 002511 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVR 254 (914)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 254 (914)
-.+. -++.+.|.-..+..++. -++.|..|| .+-|+|..+++ +..+...-+.|.++..+|+|++++++.....|.
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 3222 35677788888877776 488898888 89999998665 445566778899999999999999999888999
Q ss_pred EEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEE
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIM 296 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~ 296 (914)
+.|+.++.....-+...+-|+.+.|+|+++++|-+.-+|.+.
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceee
Confidence 999999987655555567899999999999999998877654
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-12 Score=144.29 Aligned_cols=222 Identities=11% Similarity=0.089 Sum_probs=149.3
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEE-EECCCEEEEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVA-GADDMFIRVY 84 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~vw 84 (914)
+.+..+.+.+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.|+. .+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455678889999999999999987643 359999998886543 4434456778999999998875 5667765555
Q ss_pred --ECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEE--CCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 85 --NYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWD--WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 85 --d~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
|..++. ...+..+........|+|||+.|+..+. +|...+|. ..++ ...... .+........|+| +++.++
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g-~~~~lt-~~g~~~~~~~~Sp-DG~~Ia 343 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG-AAQRVT-FTGSYNTSPRISP-DGKLLA 343 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC-ceEEEe-cCCCCcCceEECC-CCCEEE
Confidence 555444 4555555556677899999998886664 45555664 4444 222222 2223345678999 888888
Q ss_pred EEeCCC---cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc-CC--eEEEEECCCCceEEEecCcccceE
Q 002511 160 SASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 160 ~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
..+.++ .|.+||+.+++.. .+... .......|+|+++ .|+.++. .| .+.+.+. ++.....+..+.+.+.
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~--~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 418 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGR--YILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVR 418 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCC--EEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCC
Confidence 776554 5999999887643 33222 2346789999988 4555543 33 3566666 3555666655666777
Q ss_pred EEEEeCC
Q 002511 234 AVCFHPE 240 (914)
Q Consensus 234 ~i~~~~~ 240 (914)
..+|+|-
T Consensus 419 ~p~wsp~ 425 (427)
T PRK02889 419 EPSWGPF 425 (427)
T ss_pred CCccCCC
Confidence 8888874
No 246
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.2e-11 Score=132.14 Aligned_cols=443 Identities=12% Similarity=0.106 Sum_probs=266.5
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCC------------CEEEEEECCCEEE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK------------QWVVAGADDMFIR 82 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~g~~dg~i~ 82 (914)
...-.+++|+|.| +||.|+ ...|.+-|..+-+.+++++.|...|+.+.|.|-. -.||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346789999987 577776 4579999999999999999999999999998831 2567777799999
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCC---C-CEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
+||...+..+..+..|.+++..++|-+. . ..|+.-....+|.+|+..+|...- ..........|+.+.|-|...|
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W-k~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW-KYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee-ccccCCcceeeeeeCCCCcceE
Confidence 9999999999999999999999999763 3 356666777899999999984433 3333345677899999888888
Q ss_pred EEEeCCCcEEEEECCCCC-------CcEEEecCCC-------------------C------eeEEEEeeCCCcCEEEEEE
Q 002511 159 ASASLDRTIKIWNLGSPD-------PNFTLDAHQK-------------------G------VNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~-------------------~------v~~~~~~~~~~~~~l~~~~ 206 (914)
...+..|.+.+.+.-..+ ..+....|.. . ....+|+|.-++ ++...
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn--~lfi~ 249 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN--ILFIT 249 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc--eEEEE
Confidence 888888888887653211 1111111111 0 012345665553 33344
Q ss_pred cCCeEEEEECCCCceEEEecCcccceEEEEEeCCC--CEEEEEECCCeEEEEeCCCcee----------------EEEee
Q 002511 207 DDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPEL--PIIITGSEDGTVRIWHATTYRL----------------ENTLN 268 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~~~~~dg~v~iwd~~~~~~----------------~~~~~ 268 (914)
....+.++|++-..++..+.-..+.+..+.+-|++ ..|+++..||.+.+|-.+.... ...+.
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr 329 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVR 329 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEe
Confidence 46679999999888888777666667777777765 4789999999999997543211 11111
Q ss_pred cC-CccEEEEEEecC-CCEEEEEecCCeEEEEcCCCcceeE------------EcCCCcEEEEeeCcEEEEEeeecccce
Q 002511 269 YG-LERVWAIGYMKS-SRRIVIGYDEGTIMVKIGREEPVAS------------MDNSGKIIWAKHNEIQTVNIKSVGADY 334 (914)
Q Consensus 269 ~~-~~~v~~i~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~ 334 (914)
.. .-++......|. ...+++-..+|...+|..+...+.. ++.++............+...+
T Consensus 330 ~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg----- 404 (1062)
T KOG1912|consen 330 PMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG----- 404 (1062)
T ss_pred echhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcC-----
Confidence 10 111222223343 3445555667777777544322211 1111111111111111100000
Q ss_pred eccCCceeeeeeeecCCcccCCceEEECCCCC-------EEEEEc-CCcEEEEEeeccc-----ccccCceeEEEEecCC
Q 002511 335 EVTDGERLPLAVKELGTCDLYPQSLKHNPNGR-------FVVVCG-DGEYIIYTALAWR-----NRSFGSALEFVWSSDG 401 (914)
Q Consensus 335 ~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~-------~lav~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~s~~~ 401 (914)
..+.|.... ... .-..++...--|.|+ ++|+|+ .|.+.++++.... ..+.+.|.++-|....
T Consensus 405 ~h~sGs~~~----~~~-p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 405 SHSSGSTCV----RMR-PMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred CCCCCceee----ecc-cCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce
Confidence 011111110 000 000111122222222 678888 8999999887653 3345667788887666
Q ss_pred cEEEEecC----------CeEEEeccCcccceeeec----Cccccee---e-cCcEEEEEeCC-eEEEEeccCCcEEEEE
Q 002511 402 EYAVRESS----------SKIKIFSKNFQEKRSVRP----TFSAERI---Y-GGTLLAMCSND-FICFYDWAECRLIRRI 462 (914)
Q Consensus 402 ~~l~~~~~----------~~i~v~~~~~~~~~~~~~----~~s~~~i---~-~g~~La~~~~~-~i~~~d~~~~~~i~~~ 462 (914)
.++....+ +.+.|-++.....+.++. .-+|-.+ . .|++|++.-.+ -+.+||+.+..+++..
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 55543321 234444433222222221 1111111 1 48899999988 9999999888776654
Q ss_pred E--cc-eeEEEEc
Q 002511 463 D--VT-VKNLYWA 472 (914)
Q Consensus 463 ~--~~-i~~v~~s 472 (914)
. -+ ++.+.|+
T Consensus 560 S~a~P~it~leWs 572 (1062)
T KOG1912|consen 560 SLALPLITVLEWS 572 (1062)
T ss_pred hhcCCcEEEEeec
Confidence 4 23 8888898
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.4e-11 Score=126.73 Aligned_cols=263 Identities=14% Similarity=0.159 Sum_probs=177.1
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC-----------CCEEEEEEC
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----------DMFIRVYNY 86 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----------dg~i~vwd~ 86 (914)
-+-+.|||.|.||++--..| |.+|--.+-..++.|. |. .|.-+.|||..++|++-+. ...++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987666 8899877766777665 54 4889999999999998654 257999999
Q ss_pred CCCeeeEEEecCCC---CEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 87 NTMDKVKVFEAHTD---YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 87 ~t~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
.||...+.|....+ .-.-..||.|++++|.-..+ .|.||+..+- .+.....-.-..|....|+| .+++|+--+.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-~lld~Kslki~gIr~FswsP-~~~llAYwtp 366 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-MLLDKKSLKISGIRDFSWSP-TSNLLAYWTP 366 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-eeecccccCCccccCcccCC-CcceEEEEcc
Confidence 99999888765222 23347899999999977664 6899987653 22222122234578889999 6777765432
Q ss_pred C-----CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc----------CCeEEEEECCCCce-EEEecC
Q 002511 164 D-----RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD----------DHTAKVWDYQTKSC-VQTLEG 227 (914)
Q Consensus 164 d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~-~~~~~~ 227 (914)
. ..+.+..+.+++.+++...+.-.-..+.|-.+|+ +|+.--. -..+.|+.++.... +..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd--yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD--YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc--EEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-
Confidence 1 3456666666665555444443334455655565 6654321 12355666665443 22332
Q ss_pred cccceEEEEEeCCCCEEEEEEC---CCeEEEEeCCC-c---eeEEEeecCCccEEEEEEecCCCEEEEEec
Q 002511 228 HTHNVSAVCFHPELPIIITGSE---DGTVRIWHATT-Y---RLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 228 ~~~~v~~i~~~~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
....|...+|-|.|..+++-+. ..++.+|.+.+ . +++..+.. ...+.+.|+|.|++++++.-
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEe
Confidence 4567889999999997776543 34688888763 2 23333332 45678999999999998753
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.2e-12 Score=143.10 Aligned_cols=222 Identities=12% Similarity=0.080 Sum_probs=152.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCC--EE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FI 81 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i 81 (914)
.+.+..|...+.+.+|+|||+.|+..+.. ..|++||+.+++... +..+.+...+.+|+|||+.|+.. +.+| .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 34566677889999999999999987643 469999998876533 33345556688999999988644 4454 69
Q ss_pred EEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-CCe--EEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
++||+.+++. ..+..+.......+|+|||++|+.++. +|. |+++|+.++. ..... .+.......+|+| +++.+
T Consensus 275 y~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt-~~g~~~~~~~~Sp-DG~~I 350 (433)
T PRK04922 275 YVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLT-FQGNYNARASVSP-DGKKI 350 (433)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEee-cCCCCccCEEECC-CCCEE
Confidence 9999988764 345555555678899999999887764 344 7777777663 33222 2333455789999 78888
Q ss_pred EEEeCCC---cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc---CCeEEEEECCCCceEEEecCcccce
Q 002511 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNV 232 (914)
Q Consensus 159 ~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v 232 (914)
+..+.++ .|.+||+.+++.. .+. +........|+|+++ +++..+. .+.|.+++.. +.....+..+.+.+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~ 425 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--MVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEV 425 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEEcccCCCCC
Confidence 7765443 6999999877644 333 222345678999987 4555443 2458888875 44555565555667
Q ss_pred EEEEEeC
Q 002511 233 SAVCFHP 239 (914)
Q Consensus 233 ~~i~~~~ 239 (914)
...+|+|
T Consensus 426 ~~p~wsp 432 (433)
T PRK04922 426 REPAWSP 432 (433)
T ss_pred CCCccCC
Confidence 7788876
No 249
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.4e-12 Score=127.22 Aligned_cols=221 Identities=9% Similarity=0.122 Sum_probs=170.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc----eeEEeeecCCCeEEEEEecCCCEEE-EEECC--CEEEEEE
Q 002511 13 QRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT----MAKSFEVTELPVRSAKFVARKQWVV-AGADD--MFIRVYN 85 (914)
Q Consensus 13 ~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~d--g~i~vwd 85 (914)
..+++|..++.. ..+|++|..+|.+.+|....+. ....+..+ .++..+.-++....|+ +|+.. ..+.+||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344555555544 3467788889999999988543 22233323 4566677777665554 58888 8899999
Q ss_pred CCCCeeeEEEecCC---------CCEEEEEEeCC--CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCC
Q 002511 86 YNTMDKVKVFEAHT---------DYIRCVAVHPT--LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 86 ~~t~~~~~~~~~~~---------~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (914)
+++.+++..-+.-. -.++.+.|-+. ...|++++.-+.+++||.+.++.+...+.....+++++...| +
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~ 258 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-S 258 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-C
Confidence 99886655443211 14678889887 788999999999999999998888888888889999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEE-EecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceE
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFT-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
++.+++|..-|.+..||+++++.... +.+..+.+.++..+|.+. ++++++-|..|+|+|+++.+.+...- -...++
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~--~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt 335 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP--VLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLT 335 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCc--eEEeeccceeEEEeecccchhhhhhh-hhcccc
Confidence 99999999999999999999887765 788899999999988766 89999999999999999876655443 234456
Q ss_pred EEEEeCC
Q 002511 234 AVCFHPE 240 (914)
Q Consensus 234 ~i~~~~~ 240 (914)
++-+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 6666554
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.1e-12 Score=139.85 Aligned_cols=222 Identities=11% Similarity=0.037 Sum_probs=154.3
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEec---CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCC--EE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FI 81 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~---~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i 81 (914)
.+.+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+.. +.++ .|
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3456778889999999999999988764 467999999888653 455566778899999999988644 4444 58
Q ss_pred EEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
.+||+.+++. ..+..+........|+|||+.|+..+. + ..|+++|+.++ ...... .+...+....|+| +++.+
T Consensus 273 y~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt-~~~~~~~~~~~Sp-dG~~i 348 (435)
T PRK05137 273 YTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRIS-FGGGRYSTPVWSP-RGDLI 348 (435)
T ss_pred EEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEee-cCCCcccCeEECC-CCCEE
Confidence 8889887655 445556666778999999999887764 3 36888898776 333332 2344567788999 78888
Q ss_pred EEEeCC---CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc-C-----CeEEEEECCCCceEEEecCcc
Q 002511 159 ASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-D-----HTAKVWDYQTKSCVQTLEGHT 229 (914)
Q Consensus 159 ~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~ 229 (914)
+..+.+ ..|.+||+.++. ...+. ....+....|+|+++ .|+..+. . ..+.++|+..+.. ..+. ..
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~--~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~ 422 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR--VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TP 422 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC--EEEEEEccCCCCCcceEEEEECCCCce-EEcc-CC
Confidence 776543 368888986544 33333 223467789999987 4544333 2 3588888875544 4444 23
Q ss_pred cceEEEEEeCC
Q 002511 230 HNVSAVCFHPE 240 (914)
Q Consensus 230 ~~v~~i~~~~~ 240 (914)
..+...+|+|-
T Consensus 423 ~~~~~p~Wsp~ 433 (435)
T PRK05137 423 GDASDPAWSPL 433 (435)
T ss_pred CCccCcccCCC
Confidence 45667778763
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=3.3e-12 Score=130.97 Aligned_cols=219 Identities=17% Similarity=0.232 Sum_probs=163.3
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE----EEecCCCCEEEEEE-----eCCCCEEEEEEcCCeEEEEECC
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK----VFEAHTDYIRCVAV-----HPTLPYVLSSSDDMLIKLWDWE 129 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~----~~~~~~~~i~~~~~-----s~~~~~l~~~~~dg~i~iwd~~ 129 (914)
.++...++-.|++|+..-. ..+++|+++.+..+. ...-.....+|-+| .|.+--+++|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3445555566777765432 468888887432221 11111122344444 3455568888888999999876
Q ss_pred CCceEEEEee----cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC----------------------------CCC
Q 002511 130 KGWMCTQIFE----GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS----------------------------PDP 177 (914)
Q Consensus 130 ~~~~~~~~~~----~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~----------------------------~~~ 177 (914)
.. ...+.+. -.+..++++.|-|.+...|+.+-.+|.+.+||..- ..+
T Consensus 204 ~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP 282 (636)
T KOG2394|consen 204 NF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP 282 (636)
T ss_pred hh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence 53 2222221 12367999999998889999999999999997521 122
Q ss_pred cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEe
Q 002511 178 NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (914)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd 257 (914)
+..+.-..+.|+..+|+|+|. +|++.+.||.++|||+.+.+.+..++..-+...|++|||||++|++|++|--|.||.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~--~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGK--YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cceeEeccccccceeEcCCCc--eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 333333456788999999877 899999999999999998888877777778899999999999999999999999999
Q ss_pred CCCceeEEEeecCCccEEEEEEec
Q 002511 258 ATTYRLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 258 ~~~~~~~~~~~~~~~~v~~i~~~~ 281 (914)
+...+.+..-++|...|..++|.|
T Consensus 361 f~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccceEEEeccccccceeeEeecc
Confidence 999999999999999999999987
No 252
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=4.3e-12 Score=123.14 Aligned_cols=212 Identities=21% Similarity=0.352 Sum_probs=162.6
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEe-CCCCceeEEee-ecCCCeEEEEEecCCCEEEEEECCCEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWN-YQSQTMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFI 81 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd-~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (914)
++.+.++++||.+.|.....-|..+-+++.+.|.+++||- .+.++.-..+. ....+++++.+.+....|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 4567889999999999999999888899999999999995 33444433333 246789999999999999999999999
Q ss_pred EEEECC----CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC----------------------------
Q 002511 82 RVYNYN----TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE---------------------------- 129 (914)
Q Consensus 82 ~vwd~~----t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~---------------------------- 129 (914)
.-+.+. ....++....|...+..+-|+-....+++.+.|..+.---.+
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 888653 344455566788888888887766666666655433211111
Q ss_pred ------------CCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC-cEEEecCCCCeeEEEEeeC
Q 002511 130 ------------KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTG 196 (914)
Q Consensus 130 ------------~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~ 196 (914)
+...+...+.+|.+.+.+++|.| ....+++|..|..+.+||+...+- ...+.+|...|..+++.+.
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 11233445678999999999999 888999999999999999976543 3566788888988887766
Q ss_pred CCcCEEEEEEcCCeEEEEECCC
Q 002511 197 GDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 197 ~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
.. .+++++.||.|.+|+++.
T Consensus 252 t~--~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 252 TR--QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred he--eeeeccCCCeEEEEeccc
Confidence 65 699999999999999753
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=9.3e-11 Score=120.93 Aligned_cols=307 Identities=16% Similarity=0.219 Sum_probs=190.0
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-----------CCeEEEEE
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWD 127 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~iwd 127 (914)
.-+-+.|||-|.+|++--..| |.+|--.+...++.|. |. .|..+.|||..+||++-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346789999999999987776 7899766666666665 65 4899999999999998653 25799999
Q ss_pred CCCCceEEEEeec--Cccc-EEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 128 WEKGWMCTQIFEG--HSHY-VMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 128 ~~~~~~~~~~~~~--~~~~-i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
+.+| ...+.+.. .... -.-..||. |+.+++.-.. .+|.||+..+..++-.-.-.-.+|....|+|.++ +|+-
T Consensus 289 I~tG-~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~--llAY 363 (698)
T KOG2314|consen 289 IATG-LLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN--LLAY 363 (698)
T ss_pred cccc-chhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc--eEEE
Confidence 9999 45554443 1222 23457888 7888887665 6799998766433322233446778889999876 4443
Q ss_pred EEc-----CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEE----------CCCeEEEEeCCCceeEEEeec
Q 002511 205 GSD-----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS----------EDGTVRIWHATTYRLENTLNY 269 (914)
Q Consensus 205 ~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~ 269 (914)
=.. -..+.+..+.+++.+++..-+.-.=..+-|-.+|.+|+.-- .-..+.|+.++.....-..-.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 221 24577778888888777665554445577888888887532 112355666554442222222
Q ss_pred CCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeec
Q 002511 270 GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKEL 349 (914)
Q Consensus 270 ~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (914)
-...|...+|-|.|..+++-+.+-. ...++.+.+.. .+....+ ++.+
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~------------------------k~tvsfY~~e~--------~~~~~~l-Vk~~ 490 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTV------------------------KNTVSFYAVET--------NIKKPSL-VKEL 490 (698)
T ss_pred cchheeeeeeccCCCeEEEEEcccc------------------------ccceeEEEeec--------CCCchhh-hhhh
Confidence 3477899999999998887543221 00111111110 0000000 1111
Q ss_pred CCcccCCceEEECCCCCEEEEEc----CCcEEEEEeecccc-----cccCceeEEEEecCCcEEEEec
Q 002511 350 GTCDLYPQSLKHNPNGRFVVVCG----DGEYIIYTALAWRN-----RSFGSALEFVWSSDGEYAVRES 408 (914)
Q Consensus 350 ~~~~~~~~~l~~s~~g~~lav~~----~~~~~i~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~ 408 (914)
.. ...+.+.|+|.|+++++++ .|.+.+|+...-.. ......+.+-|.|.|+|+++.+
T Consensus 491 dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 491 DK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 11 2446899999999999885 56777776553111 1122345566666666666544
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.7e-11 Score=118.47 Aligned_cols=153 Identities=18% Similarity=0.290 Sum_probs=111.8
Q ss_pred EEEEEEcCCCCEEEEEec----------CCcEEEEeCC-CCceeEEeee-cCCCeEEEEEecCCCEEEEE--ECCCEEEE
Q 002511 18 VKSVDLHPSEPWILASLY----------SGTVCIWNYQ-SQTMAKSFEV-TELPVRSAKFVARKQWVVAG--ADDMFIRV 83 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~----------~g~v~iwd~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g--~~dg~i~v 83 (914)
=..+.|+|+|.+|++-.. -|...||-++ .+..+..+.. ..++|.+++|+|+|+.|++. ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 356899999998886433 2345555542 2334455544 35679999999999997655 35679999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc---CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (914)
||++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||.++. ....... | ..++.++|+| ++++|++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsP-dGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSP-DGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcC-CCCEEEE
Confidence 9997 66666664 457889999999999999874 367999999976 4443332 3 3478999999 8999998
Q ss_pred EeC------CCcEEEEECCCCCCc
Q 002511 161 ASL------DRTIKIWNLGSPDPN 178 (914)
Q Consensus 161 ~~~------dg~i~vwd~~~~~~~ 178 (914)
++. |..++||+.. |+.+
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred EEeccceeccccEEEEEec-CeEe
Confidence 875 6788999984 4433
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=4.6e-10 Score=124.97 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=156.4
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCC----CeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
+.|..-.+.-....++.++.++.+.|||...+.....+..... +..-+.++++.-++++|+.-+.|.+|.....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 3344445555677888888899999999888776665553322 233345677788999999999999999884333
Q ss_pred eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 92 VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 92 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
-..+.+|.+.|.++.|+-||.++++.|+|.++++|++++........-+|+.++..++|.| . .+++++.|-+.++|+
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWG 244 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEe
Confidence 3458899999999999999999999999999999999998666667778999999999998 3 999999999999997
Q ss_pred CCCCCCcEEEecCC-CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 172 LGSPDPNFTLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 172 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
.+. +....+..|. +.+..+...++.. .+++++.|+.+++||+..
T Consensus 245 ~~~-~~l~~y~~h~g~~iw~~~~~~~~~--~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 VNG-TQLEVYDEHSGKGIWKIAVPIGVI--IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc-ceehhhhhhhhcceeEEEEcCCce--EEEeeccCcchhhhhhhc
Confidence 644 3344666665 5678888776654 799999999999999753
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=4.3e-11 Score=116.20 Aligned_cols=239 Identities=16% Similarity=0.228 Sum_probs=168.9
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe-----eeEEEecCC------------CCEEEEEEeCCCC--EEEEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~-----~~~~~~~~~------------~~i~~~~~s~~~~--~l~~~ 117 (914)
..-|.++.|...|.+|++|..+|.|.+|.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999654322 233444443 3588899998764 56777
Q ss_pred EcCCeEEEEECCCCce----------------------------------EEEE-eecCcccEEEEEEccCCCCEEEEEe
Q 002511 118 SDDMLIKLWDWEKGWM----------------------------------CTQI-FEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 118 ~~dg~i~iwd~~~~~~----------------------------------~~~~-~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
+.|.+|++|.+..... +.++ -..|.-.|.++.++. |...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-
Confidence 8899999998764211 0111 125677789999998 77777776
Q ss_pred CCCcEEEEECCCCCCcEEE---ecC-----CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE----EE------
Q 002511 163 LDRTIKIWNLGSPDPNFTL---DAH-----QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV----QT------ 224 (914)
Q Consensus 163 ~dg~i~vwd~~~~~~~~~~---~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------ 224 (914)
.|-.|.+|++.-....+.+ +++ ..-|++..|+|.... +++-.++.|+|++-|++..... +.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4788999998654433333 222 234778889887654 7888888999999999843211 01
Q ss_pred ------ecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCC-CceeEEEeecCC------------cc---EEEEEEecC
Q 002511 225 ------LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHAT-TYRLENTLNYGL------------ER---VWAIGYMKS 282 (914)
Q Consensus 225 ------~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~------------~~---v~~i~~~~~ 282 (914)
+..--..|+.+.|+++|+++++-.. -+|++||+. ..+++.+++.|. .. -..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112245889999999999998765 489999984 455666665542 11 245889999
Q ss_pred CCEEEEEecCCeEEEEc
Q 002511 283 SRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 283 ~~~l~~~~~dg~i~i~~ 299 (914)
+.++.+|+-...+++..
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999998864
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.8e-10 Score=128.48 Aligned_cols=234 Identities=15% Similarity=0.066 Sum_probs=153.2
Q ss_pred cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEE
Q 002511 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (914)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l 114 (914)
.|.++|...+. .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 48888876554 45555677789999999999999877643 4799999998765443 3334455678999999988
Q ss_pred EE-EEcCC--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCCCcEEEecCCCCe
Q 002511 115 LS-SSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (914)
Q Consensus 115 ~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v 188 (914)
+. .+.+| .|++||+.++ .... +..+........|+| +++.++..+. +| .|.++++.+++... +.......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~-~~~~-lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR-QLSR-VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCC-CeEE-cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 74 44444 6888899887 3333 344555566788999 6776665553 33 57777887766432 22222333
Q ss_pred eEEEEeeCCCcCEEEEEEc-CC--eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC---CeEEEEeCCCce
Q 002511 189 NCVDYFTGGDKPYLITGSD-DH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYR 262 (914)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~ 262 (914)
....|+|+++ +++..+. ++ .|.+||+.++.... +.. ........|+|+|+.++..+.+ ..|.+++.. +.
T Consensus 334 ~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~ 408 (430)
T PRK00178 334 ARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GR 408 (430)
T ss_pred cceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4578999987 4555443 33 58889998776433 321 1222356899999988876644 347777764 44
Q ss_pred eEEEeecCCccEEEEEEecC
Q 002511 263 LENTLNYGLERVWAIGYMKS 282 (914)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~~ 282 (914)
....+..+.+.+...+|+|-
T Consensus 409 ~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 44445445556677777763
No 258
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=4.7e-11 Score=115.42 Aligned_cols=156 Identities=19% Similarity=0.335 Sum_probs=112.3
Q ss_pred EEEEEeCCCCEEEEEEc----------CCeEEEEECCCCceEEEEee-cCcccEEEEEEccCCCCEEEEE--eCCCcEEE
Q 002511 103 RCVAVHPTLPYVLSSSD----------DMLIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPKDTNTFASA--SLDRTIKI 169 (914)
Q Consensus 103 ~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~l~~~--~~dg~i~v 169 (914)
..+.|+|+|.+|++-.. -|...+|.++........+. ...++|.+++|+| +++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 45889999988775433 23455565543222333332 3445799999999 77776554 35679999
Q ss_pred EECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc---CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEE
Q 002511 170 WNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIIT 246 (914)
Q Consensus 170 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~ 246 (914)
||++ ++++..+ +...++.+.|+|.|+ ++++++. .|.|.+||.++.+.+.+.. | ..++.++|+|+|++|++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 9996 5555555 356778999999998 7877764 4679999999888887765 3 34789999999999998
Q ss_pred EEC------CCeEEEEeCCCceeEEEe
Q 002511 247 GSE------DGTVRIWHATTYRLENTL 267 (914)
Q Consensus 247 ~~~------dg~v~iwd~~~~~~~~~~ 267 (914)
++. |+.++||+.. |+++...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 874 6789999975 6665543
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.5e-10 Score=129.11 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=154.4
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
..|.++|...+ ..+.+..+...+.+.+|+|||++|+.++.. ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 35888887544 345565577789999999999999987653 4899999998765433 345566778999999998
Q ss_pred EEEE-EcCC--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCCCcEEEecCCCC
Q 002511 114 VLSS-SDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|+.. +.++ .|++||+.++ .... +..+........|+| +++.|+.++. ++ .|.++|+.+++. ..+..+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~-~~~~-l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK-QLTR-LTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC-CEEE-CCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 7654 4343 5888998876 3333 333444455778999 7777766554 33 588888876653 344445556
Q ss_pred eeEEEEeeCCCcCEEEEEEcCC---eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCC---eEEEEeCCCc
Q 002511 188 VNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVRIWHATTY 261 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~v~iwd~~~~ 261 (914)
+....|+|+++ +++.++.++ .|.+||+.++... .+... .......|+|+|+.|+..+.++ .+.+.+. ++
T Consensus 324 ~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 324 NASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred ccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 67889999887 677766665 7899998875543 23222 2345568999999888877654 3555553 34
Q ss_pred eeEEEeecCCccEEEEEE
Q 002511 262 RLENTLNYGLERVWAIGY 279 (914)
Q Consensus 262 ~~~~~~~~~~~~v~~i~~ 279 (914)
+....+..+.+.+..++|
T Consensus 399 ~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAW 416 (417)
T ss_pred ceeeECCCCCCCcCCCCC
Confidence 444445444444444444
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.2e-10 Score=126.90 Aligned_cols=233 Identities=15% Similarity=0.079 Sum_probs=150.0
Q ss_pred cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEE
Q 002511 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (914)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l 114 (914)
.+.++|..... .+.+..+..++.+..|+|||++|+..+.+ ..|.+||+.+++.... ....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 57777865443 34555677789999999999999877542 3689999988765333 2223334578999999988
Q ss_pred EE-EEcCCe--EEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCCCcEEEecCCCCe
Q 002511 115 LS-SSDDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQKGV 188 (914)
Q Consensus 115 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v 188 (914)
+. .+.+|. |+++|+.++ .... +..+.......+|+| +++.++..+. ++ .|.++|+.+++... +.......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg-~~~~-lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK-ALTR-ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC-CeEE-CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 75 455664 778888876 3333 334445567789999 6776665543 34 46667877765432 32222223
Q ss_pred eEEEEeeCCCcCEEEEEE-cCC--eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC-C--eEEEEeCCCce
Q 002511 189 NCVDYFTGGDKPYLITGS-DDH--TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED-G--TVRIWHATTYR 262 (914)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-g--~v~iwd~~~~~ 262 (914)
...+|+|+++ +++..+ .++ .|.++|+.++.... +... .......|+|+|+.|+..+.+ | .+++++. +|+
T Consensus 353 ~~~~~SpDG~--~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGR--SMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCC--EEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 4568999987 454443 344 45667887776432 3222 122345899999988776543 3 3777786 566
Q ss_pred eEEEeecCCccEEEEEEec
Q 002511 263 LENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 263 ~~~~~~~~~~~v~~i~~~~ 281 (914)
....+..+.+.+...+|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6666665556677788876
No 261
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.34 E-value=7.8e-08 Score=109.37 Aligned_cols=196 Identities=12% Similarity=0.109 Sum_probs=132.0
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC----C
Q 002511 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG----S 174 (914)
Q Consensus 99 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~----~ 174 (914)
.+.|.++.|..+...++.+...|.|.+-|..+. .......-...|.+++|+| |...++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 358999999999999999999999999988875 3444455567799999999 89999999988888765421 0
Q ss_pred -------------------CCCcEEEecCC---------------------CCeeEEEEeeCCCcCEEEEEE-----cCC
Q 002511 175 -------------------PDPNFTLDAHQ---------------------KGVNCVDYFTGGDKPYLITGS-----DDH 209 (914)
Q Consensus 175 -------------------~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~~-----~dg 209 (914)
|+....+.+.. ..-+.|+|-.+|+ ++++.+ ..+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~--~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE--YFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc--EEEEEEEeccCCce
Confidence 01111122111 1113477765555 777732 237
Q ss_pred eEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEE---CCCeEEEEeCCCceeEEEe----ecCCccEEEEEEecC
Q 002511 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS---EDGTVRIWHATTYRLENTL----NYGLERVWAIGYMKS 282 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~----~~~~~~v~~i~~~~~ 282 (914)
.|++||.. |..-.+-....+.-.+++|-|.|..+++.. +|+.|.+|..+ |-....+ ......+..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCC
Confidence 89999976 443322222333346899999999988754 45679999844 4433322 222334899999999
Q ss_pred CCEEEE---EecCCeEEEEcCC
Q 002511 283 SRRIVI---GYDEGTIMVKIGR 301 (914)
Q Consensus 283 ~~~l~~---~~~dg~i~i~~~~ 301 (914)
+..|++ ......|.+|...
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCceeeeecccccceEEEEEec
Confidence 999998 5555568887543
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.4e-10 Score=124.36 Aligned_cols=227 Identities=12% Similarity=0.087 Sum_probs=143.8
Q ss_pred hhcccCCCCEEEEEEcCCCCEEE---EEecC--CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC-----C
Q 002511 9 RKLAQRSERVKSVDLHPSEPWIL---ASLYS--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-----D 78 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la---~~~~~--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-----d 78 (914)
+.+......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|||||+.|+..+. +
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 34555566778889999998533 33333 358888988775433 3334555667899999999987654 2
Q ss_pred CEEEEEECCCC---eeeEEEecCCCCEEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCceEEEEeecCcccEEEEEEcc
Q 002511 79 MFIRVYNYNTM---DKVKVFEAHTDYIRCVAVHPTLPYVLSSS-DDMLIKLW--DWEKGWMCTQIFEGHSHYVMQVTFNP 152 (914)
Q Consensus 79 g~i~vwd~~t~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~p 152 (914)
..+.+|++.++ +.......+.......+|+|||+.|+..+ .+|...+| ++.........+..+...+....|+|
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 23444776653 33333333333456789999999888765 35644444 55422122333444445677889999
Q ss_pred CCCCEEEEEeCC---CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE-EEc--CCeEEEEECCCCceEEEec
Q 002511 153 KDTNTFASASLD---RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT-GSD--DHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 153 ~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~ 226 (914)
+++.|+..+.+ ..|.+||+.+++.. .+......+....|+|+++ .|+. +.. ...|+++|+.+++......
T Consensus 337 -DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~--~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 337 -DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSL--HLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred -CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 78877766543 46999999887654 3333344567889999987 4543 332 3568889998776544333
Q ss_pred CcccceEEEEEeCCC
Q 002511 227 GHTHNVSAVCFHPEL 241 (914)
Q Consensus 227 ~~~~~v~~i~~~~~~ 241 (914)
..+.+...+|+|-.
T Consensus 413 -~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 413 -GSGEKRFPSWGAFP 426 (428)
T ss_pred -CCCcccCceecCCC
Confidence 44556778888753
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.3e-08 Score=109.32 Aligned_cols=266 Identities=11% Similarity=0.173 Sum_probs=175.4
Q ss_pred EEEEecC----CcEEEEeC--CCCceeEEee-ecCCCeEEEEEecCCCEEEEEEC----CCEEEEEECCCC--e--eeEE
Q 002511 30 ILASLYS----GTVCIWNY--QSQTMAKSFE-VTELPVRSAKFVARKQWVVAGAD----DMFIRVYNYNTM--D--KVKV 94 (914)
Q Consensus 30 la~~~~~----g~v~iwd~--~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~----dg~i~vwd~~t~--~--~~~~ 94 (914)
+++|++. +.|.+|++ .++++...-. ........++++|++++|.+... +|.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566665 68999887 4554432221 23456778999999999999877 579999988753 3 2333
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCCceEEEE---ee----------cCcccEEEEEEccCCCCEEEE
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI---FE----------GHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~---~~----------~~~~~i~~~~~~p~~~~~l~~ 160 (914)
..........++++|++++|+++.. +|.|.++++.....+... .. .......++.++| +++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v 160 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYV 160 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEE
Confidence 4434556778999999999998874 899999999874233332 11 1224467899999 7777666
Q ss_pred EeC-CCcEEEEECCCCCC-c---EEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC--CCc--eEEEecCc--
Q 002511 161 ASL-DRTIKIWNLGSPDP-N---FTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKS--CVQTLEGH-- 228 (914)
Q Consensus 161 ~~~-dg~i~vwd~~~~~~-~---~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~--~~~~~~~~-- 228 (914)
... ...|.+|++..... + ..+ .........+.|+|+++. .+++...++.|.++++. ++. .+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-AYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-EEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 543 56799999876652 2 122 234466789999998873 34455568889999988 343 22222211
Q ss_pred ----ccceEEEEEeCCCCEEEEEE-CCCeEEEEeCC--Cce--eEEEeecCCccEEEEEEecCCCEEEEEec-CCeEEE
Q 002511 229 ----THNVSAVCFHPELPIIITGS-EDGTVRIWHAT--TYR--LENTLNYGLERVWAIGYMKSSRRIVIGYD-EGTIMV 297 (914)
Q Consensus 229 ----~~~v~~i~~~~~~~~l~~~~-~dg~v~iwd~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-dg~i~i 297 (914)
......|+++|+|++|.++. ..+.|.+|++. +++ .+..+.......+.++++|+|++|+++.. ++.|.+
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 12578899999999888765 45689999983 343 44455544455899999999999998874 456655
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.6e-10 Score=122.63 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=152.4
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEE---EEECC--CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCC
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV---AGADD--MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~g~~d--g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~ 111 (914)
+.|.+.|...+.. +.+......+.+-+|||||+.++ +...+ ..|.+.++.+++..... ...+......|||||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 4677888655543 44555566678889999998632 33333 46888899877654433 234445678999999
Q ss_pred CEEEEEEc-----CCeEEEEECCCC--ceEEEEeecCcccEEEEEEccCCCCEEEEEe-CCCcEEEE--ECCC-CCCcEE
Q 002511 112 PYVLSSSD-----DMLIKLWDWEKG--WMCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIW--NLGS-PDPNFT 180 (914)
Q Consensus 112 ~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~vw--d~~~-~~~~~~ 180 (914)
+.|+..+. +..+.+|++..+ ....+....+.......+|+| |++.|+..+ .+|...+| ++.. +.....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 98886653 223444676642 133344433333456789999 777666554 46654455 4432 223444
Q ss_pred EecCCCCeeEEEEeeCCCcCEEEEEEcC---CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC---CCeEE
Q 002511 181 LDAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE---DGTVR 254 (914)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---dg~v~ 254 (914)
+......+....|+|+|+ .|+..+.+ ..|.+||+.+++.... ......+....|+|+|+.|+..+. ...|.
T Consensus 322 lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred eccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 444555667889999998 45554432 4699999988876443 323345678999999998876543 35688
Q ss_pred EEeCCCceeEEEeecCCccEEEEEEecCC
Q 002511 255 IWHATTYRLENTLNYGLERVWAIGYMKSS 283 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 283 (914)
++|+.+++..... ...+.+...+|+|-.
T Consensus 399 ~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEee-cCCCcccCceecCCC
Confidence 9998877654433 344556778888754
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.4e-10 Score=127.48 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=147.0
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCC--EEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIR 82 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~ 82 (914)
+.+..+...+....|||||++|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677889999999999999876643 369999998886543 33344556678999999988754 3444 688
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
+||+.+++.. .+..+........|+|||+.|+..+. + ..|+++++.++. ...... .........|+| +++.++
T Consensus 271 ~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~-~~~~~~~~~~Sp-dg~~i~ 346 (430)
T PRK00178 271 VMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTF-VGNYNARPRLSA-DGKTLV 346 (430)
T ss_pred EEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeec-CCCCccceEECC-CCCEEE
Confidence 8999887654 34445556677899999998876664 2 367888887763 333221 122344578999 777777
Q ss_pred EEeCC-C--cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE-cC--CeEEEEECCCCceEEEecCcccceE
Q 002511 160 SASLD-R--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS-DD--HTAKVWDYQTKSCVQTLEGHTHNVS 233 (914)
Q Consensus 160 ~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~v~ 233 (914)
..+.+ + .|.++|+.++... .+.. ........|+|++. .++..+ .+ ..+.+++.. +.....+..+.+.+.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~--~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGT--MLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVR 421 (430)
T ss_pred EEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCC--EEEEEEecCCceEEEEEECC-CCceEECcCCCCCcC
Confidence 76643 3 5888998877543 3322 22223568999887 454443 33 347777775 444445554555677
Q ss_pred EEEEeCC
Q 002511 234 AVCFHPE 240 (914)
Q Consensus 234 ~i~~~~~ 240 (914)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 7788774
No 266
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.8e-10 Score=120.65 Aligned_cols=189 Identities=16% Similarity=0.254 Sum_probs=156.1
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCceeEEeee---cCCCeEEEEEe------c--------------CCCEEEEEECCCE
Q 002511 24 HPSEPWILASLYSGTVCIWNYQSQTMAKSFEV---TELPVRSAKFV------A--------------RKQWVVAGADDMF 80 (914)
Q Consensus 24 sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~---~~~~v~~~~~s------~--------------~~~~l~~g~~dg~ 80 (914)
.|.+.++|....||.++||+..+++....|.. -.+..++..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999999988877764 24556666663 2 3346788888999
Q ss_pred EEEEECCCCeeeEEEe--cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 81 IRVYNYNTMDKVKVFE--AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 81 i~vwd~~t~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
|.+|+...|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+.... .....+...+..+.+++.+| |+..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~~~~~sl~is~-D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQKPLVSSLCISP-DGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCCCccceEEEcC-CCCEE
Confidence 9999999999887775 79999999999999999999999999999999987 77888888888899999999 79999
Q ss_pred EEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeC-----CCcCEEEEEEcCCeEEEEECC
Q 002511 159 ASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG-----GDKPYLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~l~~~~~dg~i~iwd~~ 217 (914)
++++ ++|++||+.+++.+.++.+|.++|.++.|... |. .+|.+...+..+.+|-..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~-~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK-YVLSSAAAERGITVWVVE 220 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc-eeeeccccccceeEEEEE
Confidence 9887 79999999999999999999999999999876 33 133344445567777554
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=2.4e-10 Score=127.54 Aligned_cols=220 Identities=11% Similarity=0.066 Sum_probs=146.9
Q ss_pred hhhcccCCCCEEEEEEcCCCCEEEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECC--CEE
Q 002511 8 KRKLAQRSERVKSVDLHPSEPWILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADD--MFI 81 (914)
Q Consensus 8 ~~~l~~h~~~v~~~~~sp~~~~la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~d--g~i 81 (914)
.+.+..+...+.+.+|+|||++|+.+... ..|++||+.+++... +..+...+.+++|+|||+.|+.. +.+ ..|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 34455677779999999999999987653 479999998886543 33455667789999999988754 333 368
Q ss_pred EEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 82 RVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
++|++.+++. ..+..+........|+|+|+.|+.++.. + .|+++|+.++. .. .+..+...+....|+| +++.+
T Consensus 261 ~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~-~l~~~~~~~~~~~~sp-dg~~i 336 (417)
T TIGR02800 261 YVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VR-RLTFRGGYNASPSWSP-DGDLI 336 (417)
T ss_pred EEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EeecCCCCccCeEECC-CCCEE
Confidence 9999987654 3344455555678999999988876653 2 68888887763 32 2333445677889999 78888
Q ss_pred EEEeCCC---cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC---eEEEEECCCCceEEEecCcccce
Q 002511 159 ASASLDR---TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH---TAKVWDYQTKSCVQTLEGHTHNV 232 (914)
Q Consensus 159 ~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v 232 (914)
+.++.++ .|.+||+.++.. ..+... .......|+|++. +|+..+.++ .+++.+.. +.....+..+.+.+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~--~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGR--MILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDV 411 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCC--EEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCc
Confidence 8887765 789999877543 233222 2334568999887 455555443 35555543 44445554444444
Q ss_pred EEEEE
Q 002511 233 SAVCF 237 (914)
Q Consensus 233 ~~i~~ 237 (914)
..++|
T Consensus 412 ~~~~w 416 (417)
T TIGR02800 412 REPAW 416 (417)
T ss_pred CCCCC
Confidence 44444
No 268
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=5.1e-11 Score=123.34 Aligned_cols=195 Identities=11% Similarity=0.166 Sum_probs=153.9
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe---
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~--- 96 (914)
.|++|.-..-|.+++....|+-+|++.|..+..|....+.++++..++-..+|++|+.+|.|..||.++...+.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 44555444446666667789999999999999999888999999999999999999999999999998877766654
Q ss_pred ---cCCC-----CEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 97 ---AHTD-----YIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 97 ---~~~~-----~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||++....+...-.+...+|..+.|.+.++.--+.......++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhh
Confidence 2333 39999999999999999999999999999885555544455678999999875443333444567899
Q ss_pred EEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC
Q 002511 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 169 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (914)
|||-.++++...+.. ...++.+|+.|++. +++++..++.+..|=+.
T Consensus 298 iWd~~~Gk~~asiEp-t~~lND~C~~p~sG--m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP-TSDLNDFCFVPGSG--MFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccCCceeeccc-cCCcCceeeecCCc--eEEEecCCCcceeEEcc
Confidence 999999998887764 44589999999876 78888877766555443
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.1e-08 Score=109.80 Aligned_cols=262 Identities=14% Similarity=0.137 Sum_probs=169.3
Q ss_pred CCCEEEEEEcCCCCEEEEEec----CCcEEEEeCCCC--ce--eEEeeecCCCeEEEEEecCCCEEEEEEC-CCEEEEEE
Q 002511 15 SERVKSVDLHPSEPWILASLY----SGTVCIWNYQSQ--TM--AKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYN 85 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~----~g~v~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd 85 (914)
......++++|++++|.+... .|.|..|.+... ++ +............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999999876 468999987764 32 3333334455678999999999999875 89999999
Q ss_pred CCC-CeeeEE---Ee----------cCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCCce-EEE---EeecCcccEE
Q 002511 86 YNT-MDKVKV---FE----------AHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWM-CTQ---IFEGHSHYVM 146 (914)
Q Consensus 86 ~~t-~~~~~~---~~----------~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~---~~~~~~~~i~ 146 (914)
+.. |..... +. .......++.|+|+|+++++... ...|.+|+++.... +.. ..........
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 986 433322 21 12345789999999998887643 35799999986531 211 1123344578
Q ss_pred EEEEccCCCCEEE-EEeCCCcEEEEECC--CCC--CcEEEecC------CCCeeEEEEeeCCCcCEEEE-EEcCCeEEEE
Q 002511 147 QVTFNPKDTNTFA-SASLDRTIKIWNLG--SPD--PNFTLDAH------QKGVNCVDYFTGGDKPYLIT-GSDDHTAKVW 214 (914)
Q Consensus 147 ~~~~~p~~~~~l~-~~~~dg~i~vwd~~--~~~--~~~~~~~~------~~~v~~~~~~~~~~~~~l~~-~~~dg~i~iw 214 (914)
.+.|+| ++++++ +.-.+++|.++++. .+. ....+... ......+.++|+++ +|.+ ....+.|.+|
T Consensus 196 h~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 196 HLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--FLYVSNRGSNSISVF 272 (345)
T ss_dssp EEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--EEEEEECTTTEEEEE
T ss_pred EEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--EEEEEeccCCEEEEE
Confidence 999999 666654 45567889999987 332 11222211 12467899999987 4554 4457889999
Q ss_pred ECC--CCce--EEEecCcccceEEEEEeCCCCEEEEEE-CCCeEEEEeC--CCceeEEEee-cCCccEEEEEE
Q 002511 215 DYQ--TKSC--VQTLEGHTHNVSAVCFHPELPIIITGS-EDGTVRIWHA--TTYRLENTLN-YGLERVWAIGY 279 (914)
Q Consensus 215 d~~--~~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~-~dg~v~iwd~--~~~~~~~~~~-~~~~~v~~i~~ 279 (914)
++. ++.. +..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .......|+.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 983 2332 333433344578999999999999887 4568888865 5777554432 23344556554
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=3.4e-08 Score=102.69 Aligned_cols=261 Identities=10% Similarity=0.062 Sum_probs=167.5
Q ss_pred CCCEEEEEecC-----CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC----------CCEEEEEECCCCe
Q 002511 26 SEPWILASLYS-----GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMD 90 (914)
Q Consensus 26 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----------dg~i~vwd~~t~~ 90 (914)
++.++++.... |+|.+.|..+++.+..+.....+- .+ +||||+.|+++.. +..|.+||..+++
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45556554433 899999999999998888655443 34 9999999888765 7899999999999
Q ss_pred eeEEEecCCC-------CEEEEEEeCCCCEEEEEE-c-CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 91 KVKVFEAHTD-------YIRCVAVHPTLPYVLSSS-D-DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 91 ~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
.+..+..... ....++++|||++|++.. . +..|.+.|+.+++....+-.+. ...-...++ +. +.+-
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e-~~--~~~~ 163 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTAN-DT--FFMH 163 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecC-Cc--cEEE
Confidence 9988874222 334789999999999776 3 6899999999984444333221 111222222 22 2233
Q ss_pred eCCCcEEEEECCCCCCcE--E---EecCCCCee-EEEEee-CCCcCEEEEEEcCCeEEEEECCCC-----ceEEEecC--
Q 002511 162 SLDRTIKIWNLGSPDPNF--T---LDAHQKGVN-CVDYFT-GGDKPYLITGSDDHTAKVWDYQTK-----SCVQTLEG-- 227 (914)
Q Consensus 162 ~~dg~i~vwd~~~~~~~~--~---~~~~~~~v~-~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-- 227 (914)
+.||......+....... . +.....++. .-.+++ ++. ++.+... |+|.+.|+... ..+..+..
T Consensus 164 ~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 164 CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc--EEEEecC-CeEEEEecCCCcceecceeeeccccc
Confidence 345655554432211111 0 111001100 003455 443 5655555 99999996542 22222211
Q ss_pred -----cccceEEEEEeCCCCEEEEEEC----------CCeEEEEeCCCceeEEEeecCCccEEEEEEecCCC-EEEEEe-
Q 002511 228 -----HTHNVSAVCFHPELPIIITGSE----------DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIGY- 290 (914)
Q Consensus 228 -----~~~~v~~i~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~- 290 (914)
....+.-++++|+++.+++... .+.|.++|..+++.+..+... ..++.++++||++ .|++..
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCC
Confidence 1223445999999998887431 247999999999999988865 6899999999999 777665
Q ss_pred cCCeEEE
Q 002511 291 DEGTIMV 297 (914)
Q Consensus 291 ~dg~i~i 297 (914)
.++.+.+
T Consensus 320 ~s~~VsV 326 (352)
T TIGR02658 320 GDKTLYI 326 (352)
T ss_pred CCCcEEE
Confidence 4566665
No 271
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=5.4e-10 Score=106.60 Aligned_cols=250 Identities=12% Similarity=0.120 Sum_probs=169.6
Q ss_pred CCcEEEEeCCCCceeE--E-eeecCCCeEEEEEec---CCC-EEEEEECCCEEEEEECCCCeeeEEEecCCC------CE
Q 002511 36 SGTVCIWNYQSQTMAK--S-FEVTELPVRSAKFVA---RKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTD------YI 102 (914)
Q Consensus 36 ~g~v~iwd~~~~~~~~--~-~~~~~~~v~~~~~s~---~~~-~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~------~i 102 (914)
.|++.+|++...+... + .......+..+.|.- +|. .++-+..+|.|.+|..........+.+-+. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4789999987765443 1 122345677788864 455 456667789999998765444444432211 24
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE--EEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC-CcE
Q 002511 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD-PNF 179 (914)
Q Consensus 103 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~ 179 (914)
.++.|++.+..++++..+|.+.+-+.... .+. +..+.|.-.++...|+..+++++.+|+.|+.+..||++.++ .+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 57899999999999999999996665544 333 47788999999999998889999999999999999999433 333
Q ss_pred E-EecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCcccceEEEEEeCCCC--EEEEEECCCeEEE
Q 002511 180 T-LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTHNVSAVCFHPELP--IIITGSEDGTVRI 255 (914)
Q Consensus 180 ~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~v~i 255 (914)
. .+.|..+|.+|.-+|. ...++++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-. +++++-.+ -.+|
T Consensus 204 ~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki 280 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKI 280 (339)
T ss_pred ecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceE
Confidence 3 3568889999987776 345999999999999999995 56665443 457899999999543 34444333 3566
Q ss_pred EeCCCcee-----EEEeecCCccEEEEEEecCCCEEEEE
Q 002511 256 WHATTYRL-----ENTLNYGLERVWAIGYMKSSRRIVIG 289 (914)
Q Consensus 256 wd~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~~~ 289 (914)
.+.+.+.. ....+.|.+-...-.|......++++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeee
Confidence 66554432 22333343334444443333456653
No 272
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=5.9e-10 Score=106.35 Aligned_cols=240 Identities=14% Similarity=0.105 Sum_probs=165.7
Q ss_pred CCEEEEEEcC---CCC-EEEEEecCCcEEEEeCCCCceeEEeeecC------CCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 16 ERVKSVDLHP---SEP-WILASLYSGTVCIWNYQSQTMAKSFEVTE------LPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 16 ~~v~~~~~sp---~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
+.+..|.|+- +|. .++-+-..|.|.+|..........+.+-. ....++.|++.+..++++.++|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 4456666653 444 45556668889998765443333343321 1245788999999999999999999666
Q ss_pred CCCCee--eEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceE-EEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 86 YNTMDK--VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 86 ~~t~~~--~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
...+.. ++..+.|.-.+....|+... +.+.+|++|+.+..||++..... -+....|...|.+|.-+|..+.++++|
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence 554443 34778899999999998755 47789999999999999943233 333556888899999999889999999
Q ss_pred eCCCcEEEEECCC-CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCc-----eEEEecCcccceEEE
Q 002511 162 SLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-----CVQTLEGHTHNVSAV 235 (914)
Q Consensus 162 ~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i 235 (914)
+.|-.|++||.++ ++|++.-. ..++|..+.++|.....+++++-.+| .+|.+.+.+. .....+.|.+-+..-
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred ccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecc
Confidence 9999999999984 56665443 45899999999987654455554444 6666665432 233445566555566
Q ss_pred EEeCCCCEEEEEE-CCCeEE-EEe
Q 002511 236 CFHPELPIIITGS-EDGTVR-IWH 257 (914)
Q Consensus 236 ~~~~~~~~l~~~~-~dg~v~-iwd 257 (914)
.|.....+|++++ .|..++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 6644445677765 455533 554
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=4e-10 Score=124.92 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=143.0
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEec-C--CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCC--EEEE
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLY-S--GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDM--FIRV 83 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~-~--g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg--~i~v 83 (914)
.+..+...+.+..|||||++|+..+. + ..|++||+.+++... +....+.....+|+|||+.|+.. +.+| .|++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34445667889999999999987654 2 358899998876533 33233445578999999988754 5555 4888
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-C--CeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-D--MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (914)
+|+.+++. ..+..+........|+|||+.|+..+. + ..|.++|+.++. ..... .........+|+| +++.++.
T Consensus 291 ~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt-~~g~~~~~~~~Sp-DG~~l~~ 366 (448)
T PRK04792 291 VDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLT-FEGEQNLGGSITP-DGRSMIM 366 (448)
T ss_pred EECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEe-cCCCCCcCeeECC-CCCEEEE
Confidence 89887764 344445556678899999998876654 3 357777887763 33321 1222334578999 7777766
Q ss_pred EeC-CC--cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC--eEEEEECCCCceEEEecCcccceEEE
Q 002511 161 ASL-DR--TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTKSCVQTLEGHTHNVSAV 235 (914)
Q Consensus 161 ~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i 235 (914)
.+. ++ .|.++|+.+++.. .+... .......|+|++.. ++++...+| .+++++. ++.....+..+.+.+...
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~-I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM-VIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE-EEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCC
Confidence 554 34 4566788776543 23222 12234579999874 333344444 3777786 466666666566667788
Q ss_pred EEeCC
Q 002511 236 CFHPE 240 (914)
Q Consensus 236 ~~~~~ 240 (914)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 88873
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.26 E-value=1.6e-08 Score=105.11 Aligned_cols=238 Identities=12% Similarity=0.111 Sum_probs=157.6
Q ss_pred EcCCCCEEEEEec----------CCcEEEEeCCCCceeEEeeecCC-------CeEEEEEecCCCEEEEEE-C-CCEEEE
Q 002511 23 LHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGA-D-DMFIRV 83 (914)
Q Consensus 23 ~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~g~-~-dg~i~v 83 (914)
+||||+.|+++.. +..|.+||..+++.+..+..... ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887765 68899999999999988875332 234789999999999876 3 789999
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce-EEE---EeecCcccEE-EEEEccCCCCEE
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ---IFEGHSHYVM-QVTFNPKDTNTF 158 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~---~~~~~~~~i~-~~~~~p~~~~~l 158 (914)
.|+.+++.+..+.-.. ...-...+++. +++ -+.||......+..... ... .+.....++. .-.|.+.++..+
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999998887532 22223333332 222 23344444433332111 111 1111000000 003455467777
Q ss_pred EEEeCCCcEEEEECCCCC-----CcEEEe-------cCCCCeeEEEEeeCCCcCEEEEEE----------cCCeEEEEEC
Q 002511 159 ASASLDRTIKIWNLGSPD-----PNFTLD-------AHQKGVNCVDYFTGGDKPYLITGS----------DDHTAKVWDY 216 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~-----~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~ 216 (914)
++... |+|.+.|+.... +...+. -..+.+.-++++++++. +++.. ..+.|.++|.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~--lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR--IYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE--EEEEecCCccccccCCCCEEEEEEC
Confidence 66666 999999965432 222211 12334455899998885 44421 1257999999
Q ss_pred CCCceEEEecCcccceEEEEEeCCCC-EEEEEE-CCCeEEEEeCCCceeEEEe
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTL 267 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~ 267 (914)
.+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+.++
T Consensus 287 ~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999988873 45789999999999 777665 5788999999999998887
No 275
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.4e-10 Score=127.11 Aligned_cols=268 Identities=18% Similarity=0.225 Sum_probs=187.5
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeec-CCCeEEEEEec------CCCEEEEEECCCEEEEEECCC
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVA------RKQWVVAGADDMFIRVYNYNT 88 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~------~~~~l~~g~~dg~i~vwd~~t 88 (914)
+++.+.++-. ++|++|. .-.|.+||+.++..+..+... -.++. .+ .+..++++...+.+..=....
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh
Confidence 3444444433 6777764 557999999988765544321 11111 11 233455554433333322211
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEE---EEEEccCCCCEEEEEeCCC
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVM---QVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~---~~~~~p~~~~~l~~~~~dg 165 (914)
+.... -.+.|....+.-....++.++.+..+.+||...++....+......... -+-+++ +.-++++|+--+
T Consensus 81 -~~~~~---~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 81 -QIIER---FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFG 155 (967)
T ss_pred -hhhhh---ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccc
Confidence 11112 2333444555666778999999999999999887544444322221111 122444 567889999999
Q ss_pred cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE-EecCcccceEEEEEeCCCCEE
Q 002511 166 TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-TLEGHTHNVSAVCFHPELPII 244 (914)
Q Consensus 166 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l 244 (914)
.|.+|+....+....+.+|.+.+..+.++.+|. ++++.++|.++++|++.+.+... +.-+|...|+.++|+|+ .+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred cEEEEeccccCCcceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 999999875554456889999999999999887 89999999999999999887655 55679999999999998 89
Q ss_pred EEEECCCeEEEEeCCCceeEEEeecCC-ccEEEEEEecCCCEEEEEecCCeEEEEcC
Q 002511 245 ITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 245 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~dg~i~i~~~ 300 (914)
++++.|.+.++|+.. +..+..+..|. ..++.+...++...+++++.||.+++|..
T Consensus 232 ~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 999999999999754 55555666664 56999999999999999999999999753
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=2.3e-11 Score=141.08 Aligned_cols=200 Identities=16% Similarity=0.276 Sum_probs=163.4
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeee-cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCC
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEV-TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~ 89 (914)
+..|-..|.+|.=||..++-++|+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+.++..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 344567799999999999999999999999999998888877764 34789999999999999999999999999987 5
Q ss_pred eeeEEEecCCCCEEEEEEeCCCCEEEEEE---cCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
++....+.|....+.+.|-. ..+++++ .++.+.+||.--......+-..|.+.++++++-| ..++|++|+.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCc
Confidence 67777788999888888876 4566653 5789999996533222223378999999999999 8899999999999
Q ss_pred EEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec
Q 002511 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 167 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (914)
|++||++..+...+++. +. .+.++++|+..|.++||++.....++++.
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~---~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD---TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh---hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999988776665543 22 22389999999999999998877666654
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=9e-09 Score=112.82 Aligned_cols=255 Identities=11% Similarity=0.001 Sum_probs=164.5
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEE-E
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRC-V 105 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~-~ 105 (914)
+..+++++.+|.|.-+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+....... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 56788888899999999999998877664433222222 356788899999999999999999887765332 2222 1
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccE-----EEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEE
Q 002511 106 AVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYV-----MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT 180 (914)
Q Consensus 106 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i-----~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 180 (914)
.. .+..++.++.+|.|..||.+++... -........+ .+.... +..++.++.++.+..+|..+++....
T Consensus 142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LV--ANGLVVVRTNDGRLTALDAATGERL-WTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--ECCEEEEECCCCeEEEEEcCCCcee-eEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCEeee
Confidence 22 2456778888999999999988332 2222111111 111121 24677888899999999998876654
Q ss_pred EecCCC----C---eeEEEEee--CCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCC
Q 002511 181 LDAHQK----G---VNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG 251 (914)
Q Consensus 181 ~~~~~~----~---v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg 251 (914)
...... . ...+.-+| .++ .+++++.+|.++.||..+++.+...... ...... ..+..+++++.+|
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G 289 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGG--QVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADG 289 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECC--EEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCC
Confidence 321100 0 00010011 122 6888888999999999999887766521 112222 2456788888999
Q ss_pred eEEEEeCCCceeEEEeecCCc-cEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 252 TVRIWHATTYRLENTLNYGLE-RVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.|..+|..+++.+........ ...+... .+..+++++.+|.++++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 999999999988776532211 1222222 35688888888888774
No 278
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.9e-09 Score=113.17 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=150.4
Q ss_pred cCCCEEEEEECCCEEEEEECCCCeeeEEEec---CCCCEEEEEEe--------------------CCCCEEEEEEcCCeE
Q 002511 67 ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA---HTDYIRCVAVH--------------------PTLPYVLSSSDDMLI 123 (914)
Q Consensus 67 ~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~---~~~~i~~~~~s--------------------~~~~~l~~~~~dg~i 123 (914)
|...++|..+.||.+++|+..+++....|.. -.+..++..|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766642 23344555552 223357788889999
Q ss_pred EEEECCCCceEEEEe--ecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCE
Q 002511 124 KLWDWEKGWMCTQIF--EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (914)
Q Consensus 124 ~iwd~~~~~~~~~~~--~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (914)
.+|+...+ .+...+ ..|.+.|.++.++. +-..|.+++.|+.+..|+....+.++.+......+.+++++|++. .
T Consensus 83 ~~ys~~~g-~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~--~ 158 (541)
T KOG4547|consen 83 LLYSVAGG-EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK--I 158 (541)
T ss_pred EEEEecCC-eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC--E
Confidence 99999988 444443 47889999999987 788999999999999999999999999999999999999999976 6
Q ss_pred EEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCC-----CCEEEEEE-CCCeEEEEeCC
Q 002511 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE-----LPIIITGS-EDGTVRIWHAT 259 (914)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~~~~-~dg~v~iwd~~ 259 (914)
+++++ +.|++||+.+++.+.+|.+|.++|.++.|..+ |.+++++. .+..+.+|-..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 77765 57999999999999999999999999999877 66666543 34456666543
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.2e-08 Score=108.31 Aligned_cols=464 Identities=14% Similarity=0.138 Sum_probs=246.6
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccc-eEEEEEeCCCCEEEEEECCC-----eEEEEeCCCc-----
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHN-VSAVCFHPELPIIITGSEDG-----TVRIWHATTY----- 261 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg-----~v~iwd~~~~----- 261 (914)
|++++. .++.|+.+|.|.+.+-+ -+.++.++.+... |..+....+..+|++.++|+ .|+||++..-
T Consensus 31 ~~s~~~--~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG--SVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc--eEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 444444 69999999999988743 4555777777776 44444444446888877665 4999997632
Q ss_pred -eeE---EEe--ec--CCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccc
Q 002511 262 -RLE---NTL--NY--GLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGAD 333 (914)
Q Consensus 262 -~~~---~~~--~~--~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 333 (914)
.+. +.+ .. ...++.+++.+.+-+.+|+|..+|.|....|. ++........
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD------------i~RDrgsr~~---------- 165 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD------------ILRDRGSRQD---------- 165 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc------------chhcccccee----------
Confidence 222 111 11 24678899999999999999999999885322 2211111100
Q ss_pred eeccCCceeeeeeeecCCcccCCceEEECCCCCE-EEEEcCCcEEEEEeecccccccCceeEEEEecCCcEEEEecCCeE
Q 002511 334 YEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRF-VVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESSSKI 412 (914)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~-lav~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~i 412 (914)
.......+|+.+++..+++. +.+++..++..|.+....+ ..
T Consensus 166 --------------~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p------------------------~~ 207 (933)
T KOG2114|consen 166 --------------YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP------------------------SL 207 (933)
T ss_pred --------------eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc------------------------ce
Confidence 01222346778888888776 4455566666665441110 01
Q ss_pred EEeccCcccceeeecCcccceeecCcEEEEEeCCeEEEEeccCCcEEEEEE-cceeEEEEcCCCCEEEEEeCCeEEEEEe
Q 002511 413 KIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRID-VTVKNLYWADSGDLVAIASDTSFYILKY 491 (914)
Q Consensus 413 ~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~-~~i~~v~~s~dg~~la~~~~~~~~~~~~ 491 (914)
++-|.+ +..-....|++. ..-++++.+..+.|||.+...+...+. +.=.-+.|...|-++++..+.+.-.
T Consensus 208 ~~ld~~--G~~lnCss~~~~----t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~--- 278 (933)
T KOG2114|consen 208 KVLDNN--GISLNCSSFSDG----TYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTEN--- 278 (933)
T ss_pred eeeccC--CccceeeecCCC----CccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCC---
Confidence 111100 000001123332 223666666678888877555544444 3333444444444443333221110
Q ss_pred cHHHHHHhhhCCCCCCccccccceeEeeeeeeEEEeeEEecCEEEEEccCCeE-EEEECCEEeEEEecccceEEEEEeec
Q 002511 492 NRDVVSAYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNSSWRL-NYCVGGEVTTMFHLDRPMYLLGYLAS 570 (914)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~~~w~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (914)
.+ ..+... .++ +-+|.-. ++. -|.. -++..... +...
T Consensus 279 -----------------~s--~s~ss~----~~i--------~~~~d~~-n~~v~ys~--------vl~~l~d~--l~~w 316 (933)
T KOG2114|consen 279 -----------------TS--LSNSSS----NRI--------FKAYDLR-NRYVLYSS--------VLEDLSDN--LIEW 316 (933)
T ss_pred -----------------cc--cCccch----hhe--------eehhhhc-CcccchHH--------hHHHHHHH--HHhc
Confidence 00 000000 000 0111111 111 1110 00000000 0011
Q ss_pred CCEEEEEecCCceEEEEecchhHhHHHHHHccCHHHHhhhcCCCCc--ch----HHHHHHHHHhCCChhhhhhcccCccc
Q 002511 571 QSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPK--EH----HNSVARFLESRGMIEEAIEVATDPDY 644 (914)
Q Consensus 571 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~l~~i~~--~~----~~~~~~~~~~~~~~~~a~~~~~~~~~ 644 (914)
+..++++..+|.+.....-....+....+.+..+..|..+..+... .. |-.-..||-++|..+.|+
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~-------- 388 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEAT-------- 388 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHH--------
Confidence 2355566666665543322212222223333444445444222111 11 123356677777777776
Q ss_pred ceeeec-ccCCHHHHHHHHHHcCChHHHHHHHHHHHH--------cCChhhHHHHHHHcCCcchhHHHHHhcCC---HHH
Q 002511 645 RFELAI-QLGRLEVAQEIATEVQSESKWKQLGELAMS--------TGKLEMAEGCMKQAMDLSGLLLLYSSLGD---AEG 712 (914)
Q Consensus 645 ~f~~~l-~l~~~~~A~~~a~~~~~~~~w~~la~~al~--------~~~~~~A~~~y~~~~d~~~l~~l~~~~g~---~~~ 712 (914)
.+++ .+|.+|-++-+-+. -+++.-++|..+... .-...+-..||.+.+|.++|...-....+ .-.
T Consensus 389 --~qYI~tI~~le~s~Vi~kf-Ldaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd 465 (933)
T KOG2114|consen 389 --DQYIETIGFLEPSEVIKKF-LDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD 465 (933)
T ss_pred --HHHHHHcccCChHHHHHHh-cCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee
Confidence 3333 23444444433333 345555777765542 24455678899999999998764443331 113
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHH-HHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhc
Q 002511 713 ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQL-LVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKV 781 (914)
Q Consensus 713 ~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l-~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~ 781 (914)
++..-++....+-...|..++...++-+..+++ +...+.+.+|+.+-..+-++.+-+.+..|.+.|...
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h 535 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEH 535 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence 666777888888888999998888885555555 445666999999999988888888888888877543
No 280
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=2.8e-09 Score=113.63 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=118.9
Q ss_pred cCcccceeeecccCCHHHHHHHHHHcCChHH----------------HHHHHHHHHHcCChhhHHHHHHHcCCcchhHHH
Q 002511 640 TDPDYRFELAIQLGRLEVAQEIATEVQSESK----------------WKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLL 703 (914)
Q Consensus 640 ~~~~~~f~~~l~l~~~~~A~~~a~~~~~~~~----------------w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l 703 (914)
.+.+.+.-|+-+|.+||+|+.+|+-..+|.. =.+.|+.-...|+--.|+..|.+++-..+++++
T Consensus 558 n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~ 637 (1636)
T KOG3616|consen 558 NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARA 637 (1636)
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHh
Confidence 3445556899999999999999988777652 123445555667777889999999988877765
Q ss_pred HH----hcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhh
Q 002511 704 YS----SLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQ 779 (914)
Q Consensus 704 ~~----~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~ 779 (914)
.. .+.|-+.++.++....+...+..|+.+|.++.+|++|++.|.+.+-+-+|+++||--.|.++-.+.+.|..+|.
T Consensus 638 a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~ 717 (1636)
T KOG3616|consen 638 ALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE 717 (1636)
T ss_pred hcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH
Confidence 44 25667778888888888899999999999999999999999999999999999999999999999999999987
Q ss_pred hcC
Q 002511 780 KVN 782 (914)
Q Consensus 780 ~~~ 782 (914)
.++
T Consensus 718 ~~~ 720 (1636)
T KOG3616|consen 718 QIG 720 (1636)
T ss_pred HHH
Confidence 554
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=1.3e-08 Score=111.65 Aligned_cols=256 Identities=12% Similarity=0.050 Sum_probs=167.6
Q ss_pred CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEE--
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-- 103 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~-- 103 (914)
++..+++++.+|.+..+|..+|+.+....... .+.+.-.. .+..++.++.+|.|..||.++|+.+..+......+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45678888889999999999998877665332 22221111 345678888899999999999998877754332211
Q ss_pred ---EEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCc---c---c---E-EEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 104 ---CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---Y---V-MQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 104 ---~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~---i-~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
+.... +..++.++.+|.+..+|..++...-..-.... . . + .+..+ .++.+++++.+|.+..|
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEE
Confidence 11222 24677888889999999988843322111000 0 0 0 11112 24578888889999999
Q ss_pred ECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCccc-ceEEEEEeCCCCEEEEEEC
Q 002511 171 NLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSE 249 (914)
Q Consensus 171 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~ 249 (914)
|..+++........ ....... .++ .+++++.+|.+..+|..+++.+........ ...+... .+..+++++.
T Consensus 257 d~~tG~~~W~~~~~--~~~~p~~--~~~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 257 DLRSGRVLWKRDAS--SYQGPAV--DDN--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred ECCCCcEEEeeccC--CccCceE--eCC--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 99998877655421 1112222 233 688888999999999999988776532221 2222222 3568889999
Q ss_pred CCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 250 DGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 250 dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+|.|+++|..+|+.+..+..+...+..--...+ ..|++++.||.++.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 999999999999999888766544333222233 45888999998875
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=9.6e-08 Score=97.21 Aligned_cols=215 Identities=10% Similarity=0.136 Sum_probs=158.0
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCceeEEeeec-------C-----CCeEEEE-Eec-CCCEEEEEECCCEEEEEECCC
Q 002511 23 LHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-------E-----LPVRSAK-FVA-RKQWVVAGADDMFIRVYNYNT 88 (914)
Q Consensus 23 ~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-------~-----~~v~~~~-~s~-~~~~l~~g~~dg~i~vwd~~t 88 (914)
.+.||+.++.. ..|.|.+||..+..+.+ +... + .+..-+. |++ +|.+++..|. |...|.+...
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC
Confidence 35688887764 57899999987764432 2211 0 1111122 333 6788888765 6777877665
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC-eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
+-.++. +|...|+...+..++.-++.|..|| .+-|+|.+++ . .+.+...-+.|.++..+| ++..++++.....|
T Consensus 351 ~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el 425 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-E-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFEL 425 (668)
T ss_pred CeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-e-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEE
Confidence 544443 5677799999998888899999999 8999999987 3 344455567799999999 89999999999999
Q ss_pred EEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC----eEEEEECCCCceEEEecCcccceEEEEEeCCCCE
Q 002511 168 KIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH----TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 168 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
.+.|+.+++....-+...+-|+...|+|++. +++-+.-+| .|+++|+.+++...... ....=.+-+|.|++++
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr--~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry 502 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSR--WIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCce--eEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence 9999999987766677788899999999987 788766554 68999999777654333 3333456789999998
Q ss_pred EEEEE
Q 002511 244 IITGS 248 (914)
Q Consensus 244 l~~~~ 248 (914)
|..-+
T Consensus 503 LYfLs 507 (668)
T COG4946 503 LYFLS 507 (668)
T ss_pred EEEEe
Confidence 87655
No 283
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=3.3e-09 Score=103.50 Aligned_cols=246 Identities=14% Similarity=0.191 Sum_probs=180.6
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE-CCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEE
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLW 126 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd-~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 126 (914)
....+++|...|+....-|-..-+++.+.|.+++||- .++++.-..+. ....+++++.+++....|++|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4456778888888888888888899999999999994 44555444332 346789999999999999999999999988
Q ss_pred ECCCC---ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEE
Q 002511 127 DWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLI 203 (914)
Q Consensus 127 d~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 203 (914)
.+... -...+....|..++..+-|+. ....+++.+.|..+.---.+++..+-...- .....+..+.- .+..
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~----~~~f 169 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA----LYAF 169 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee----EEEE
Confidence 76532 134455667999999999987 678889998888765433344433211110 00001111110 0344
Q ss_pred EEEcCCeEEEEEC--CCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce-eEEEeecCCccEEEEEEe
Q 002511 204 TGSDDHTAKVWDY--QTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGLERVWAIGYM 280 (914)
Q Consensus 204 ~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~i~~~ 280 (914)
.|...|.|..-.+ ..-..+.++.+|...+.+++|.|...++.+|..|..+.+||+...+ ....+..+...|..++..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 4555555555443 3456788999999999999999999999999999999999987555 345677788889999988
Q ss_pred cCCCEEEEEecCCeEEEEcC
Q 002511 281 KSSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 281 ~~~~~l~~~~~dg~i~i~~~ 300 (914)
+--+.+.+++.||.|.+|.-
T Consensus 250 ~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhheeeeeccCCCeEEEEec
Confidence 88899999999999999853
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=132.45 Aligned_cols=197 Identities=17% Similarity=0.306 Sum_probs=160.2
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (914)
+-..|.++.=+|...+-++|+.||.+++|....++.+..++ .....|+.+.|+.+|+.+.++..||.+.+|.... ++
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cc
Confidence 44568888889999999999999999999999888887775 2347899999999999999999999999999873 56
Q ss_pred EEEeecCcccEEEEEEccCCCCEEEEEe---CCCcEEEEECCCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 135 TQIFEGHSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 135 ~~~~~~~~~~i~~~~~~p~~~~~l~~~~---~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
......|......+.|-. ..+++++ .++.+.+||..-.. .-..-..|.++++++++.|... +|++|+.+|.
T Consensus 2285 ~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGRKGE 2359 (2439)
T ss_pred eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCCcCc
Confidence 666777888888888863 5566654 36889999964322 2222378999999999999877 8999999999
Q ss_pred EEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec
Q 002511 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (914)
|++||++..+.+++++. ++ ...++++|+..|.++||++....++.++..
T Consensus 2360 v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99999998877766653 44 456899999999999999998877766553
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=1.1e-07 Score=115.47 Aligned_cols=238 Identities=10% Similarity=0.131 Sum_probs=159.2
Q ss_pred EEEEEcCC-CCEEEEEecCCcEEEEeCCCCceeEEeee-c-------------CCCeEEEEEecCCCEEEEEEC-CCEEE
Q 002511 19 KSVDLHPS-EPWILASLYSGTVCIWNYQSQTMAKSFEV-T-------------ELPVRSAKFVARKQWVVAGAD-DMFIR 82 (914)
Q Consensus 19 ~~~~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~s~~~~~l~~g~~-dg~i~ 82 (914)
..++++++ +..+++-..++.|.+||.. +..+..+.+ . -.....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46889885 4455555567889999965 544444332 1 123578999999887766654 57899
Q ss_pred EEECCCCeeeEEEecC-----------------CCCEEEEEEeCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecC---
Q 002511 83 VYNYNTMDKVKVFEAH-----------------TDYIRCVAVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--- 141 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~-----------------~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 141 (914)
++|..++. +.++.+. -.....++|+|+ +..+++.+.++.|++||..++.. . .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-R-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-E-EEecCCcc
Confidence 99987754 4333210 113467999994 55556667789999999987632 2 11110
Q ss_pred ------------cccEEEEEEccCCCC-EEEEEeCCCcEEEEECCCCCCcEEEec---------------------CCCC
Q 002511 142 ------------SHYVMQVTFNPKDTN-TFASASLDRTIKIWNLGSPDPNFTLDA---------------------HQKG 187 (914)
Q Consensus 142 ------------~~~i~~~~~~p~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------------~~~~ 187 (914)
-.....++++| +++ ++++-+.++.|++||+.++.......+ .-..
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 12346789999 555 666667789999999976542211100 0112
Q ss_pred eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-------------CcccceEEEEEeCCCCEEEEEECCCeEE
Q 002511 188 VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-------------GHTHNVSAVCFHPELPIIITGSEDGTVR 254 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~i~~~~~~~~l~~~~~dg~v~ 254 (914)
...++++++++ ++++-+.++.|++||..++....... +.-.....++++++|+++++-+.++.|+
T Consensus 806 P~Gvavd~dG~--LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 806 PLGVLCAKDGQ--IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred CceeeEeCCCc--EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 35788888876 77888889999999998766543221 1112467899999999888888899999
Q ss_pred EEeCCCcee
Q 002511 255 IWHATTYRL 263 (914)
Q Consensus 255 iwd~~~~~~ 263 (914)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=5.1e-09 Score=100.48 Aligned_cols=240 Identities=19% Similarity=0.371 Sum_probs=168.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-----eeEEeeecCC------------CeEEEEEecCC--CEEEE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQT-----MAKSFEVTEL------------PVRSAKFVARK--QWVVA 74 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~------------~v~~~~~s~~~--~~l~~ 74 (914)
..+.|+++.|...|.||++|...|.|.+|.-+... ....|++|+. .|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999754321 2233555542 57888998765 35667
Q ss_pred EECCCEEEEEECCCC-------------------------------------eee-----EEE-ecCCCCEEEEEEeCCC
Q 002511 75 GADDMFIRVYNYNTM-------------------------------------DKV-----KVF-EAHTDYIRCVAVHPTL 111 (914)
Q Consensus 75 g~~dg~i~vwd~~t~-------------------------------------~~~-----~~~-~~~~~~i~~~~~s~~~ 111 (914)
.+.|.+|++|.+... +.+ +.. ..|.-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999976321 000 111 3567778999999988
Q ss_pred CEEEEEEcCCeEEEEECCCCceEEEEe--ecC-----cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC------c
Q 002511 112 PYVLSSSDDMLIKLWDWEKGWMCTQIF--EGH-----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP------N 178 (914)
Q Consensus 112 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~-----~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~------~ 178 (914)
..++++ +|-.|.+|+++-......+. ..| ..-|++..|+|...+.|.-.+..|.|++-|++.... .
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 777765 56789999987543333332 233 235889999998889999999999999999984321 1
Q ss_pred EE----------EecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecCccc------------ce---
Q 002511 179 FT----------LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEGHTH------------NV--- 232 (914)
Q Consensus 179 ~~----------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v--- 232 (914)
.. +..-...|..+.|+++|. |+++- +--+|+|||.+. ..++.++..|.. .|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngr--yIlsR-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGR--YILSR-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCc--EEEEe-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 11 112234677889999886 55544 456899999985 456777754421 22
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEe
Q 002511 233 SAVCFHPELPIIITGSEDGTVRIWH 257 (914)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd 257 (914)
..+.|+.+.+.+++|+..+..-+|-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 3578888889999999887777765
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=3.2e-08 Score=93.34 Aligned_cols=239 Identities=12% Similarity=0.004 Sum_probs=160.2
Q ss_pred EEEEcC-----CCCEEEEEecCCcEEEEeCCCCcee-EEeeecCCCeEEEEEec-CCCEEEEEECCCEEEEEECCCCeee
Q 002511 20 SVDLHP-----SEPWILASLYSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVA-RKQWVVAGADDMFIRVYNYNTMDKV 92 (914)
Q Consensus 20 ~~~~sp-----~~~~la~~~~~g~v~iwd~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~vwd~~t~~~~ 92 (914)
.|.|-| .-.+||.|+..|...+|...+.+.. +....|...|+-+.=.. ....+..++.|.++++.++.-+..-
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 455555 2347999999999999998865432 33333443332222111 2234667778888888887644332
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCce-EEE-EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 93 KVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-CTQ-IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 93 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
....-..-.+.++.++++++++++.++...|..|.++.... ... ........-.+..|+. ....|++++.||++.||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIY 230 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEE
Confidence 22221112378999999999999999999999999875422 222 2223344456788988 78899999999999999
Q ss_pred ECCCCCCc-----EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC-------cc-cceEEEEE
Q 002511 171 NLGSPDPN-----FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG-------HT-HNVSAVCF 237 (914)
Q Consensus 171 d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~-~~v~~i~~ 237 (914)
|++..... .+-..|.+.+..+.|++.|.-.+|+..-.-+.+.+.|++++...+.+.. |. ..|...+|
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f 310 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNF 310 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccc
Confidence 99874322 2224588999999999887766778777788999999999876554432 22 23777778
Q ss_pred eCCCCEEEEEECCCeEEEEeCCC
Q 002511 238 HPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 238 ~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
+.++..+.+.+++ .+.-|++..
T Consensus 311 ~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 311 NNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred cCCCcccccccch-hhheeeccc
Confidence 8777766666554 455555543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-08 Score=97.23 Aligned_cols=238 Identities=17% Similarity=0.288 Sum_probs=163.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe-----eeEEEecCC------------CCEEEEEEeCCCC--EEEEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD-----KVKVFEAHT------------DYIRCVAVHPTLP--YVLSS 117 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~-----~~~~~~~~~------------~~i~~~~~s~~~~--~l~~~ 117 (914)
...|+++.|...|.+|++|...|.|.+|.-+... ....+++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999754322 122344553 2477888876653 57777
Q ss_pred EcCCeEEEEECCCCc-----------------------------------------eEEEEe-ecCcccEEEEEEccCCC
Q 002511 118 SDDMLIKLWDWEKGW-----------------------------------------MCTQIF-EGHSHYVMQVTFNPKDT 155 (914)
Q Consensus 118 ~~dg~i~iwd~~~~~-----------------------------------------~~~~~~-~~~~~~i~~~~~~p~~~ 155 (914)
+.|.+|++|.+.... .+.+++ ..|.-.|.++.|+. |.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999875330 000111 34666788999987 66
Q ss_pred CEEEEEeCCCcEEEEECCCCCCcEEE---ecCC-----CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce------
Q 002511 156 NTFASASLDRTIKIWNLGSPDPNFTL---DAHQ-----KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------ 221 (914)
Q Consensus 156 ~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 221 (914)
..++++ .|-.|.+|++.-....+.+ ++|. .-|++..|+|.... .+.-.++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCchh
Confidence 666654 5788999998655443333 2332 34677888887654 666777889999999984221
Q ss_pred E----------EEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce-eEEEeecCC------------ccE---E
Q 002511 222 V----------QTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR-LENTLNYGL------------ERV---W 275 (914)
Q Consensus 222 ~----------~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~------------~~v---~ 275 (914)
+ .-+.+-...|+.+.|+++|+++++-+.- +|+|||.+..+ ++.++..|. ..| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 0 0112223568899999999999987754 89999987644 556654331 222 3
Q ss_pred EEEEecCCCEEEEEecCCeEEEE
Q 002511 276 AIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.+.||.|.+.+.+|+.+....++
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred EEEecCCcccccccccccceeee
Confidence 57889999999999888877774
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=1.8e-09 Score=115.14 Aligned_cols=281 Identities=18% Similarity=0.206 Sum_probs=195.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC-CceeEEeee-cCCCeEEEEEecCC--CEEEEEECCCEEEEEECCC--
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS-QTMAKSFEV-TELPVRSAKFVARK--QWVVAGADDMFIRVYNYNT-- 88 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~~~-~~~~v~~~~~s~~~--~~l~~g~~dg~i~vwd~~t-- 88 (914)
.+.+.++.++|.|.-+|.++.-| +.+-|+.. +...+-+.. ..-.|-...|+|.. .+-++..+...-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 35678899999999999988776 55666654 333333331 12347778898854 3334444445556898752
Q ss_pred -CeeeEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 89 -MDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 89 -~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
...-..+.+|...|+.+.|+|+.+ .+++++.|-.+..||+++.......+..-...-..+.|+-++++.+++. ..+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND 181 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCc
Confidence 233445678999999999999775 6789999999999999988666666655555678899999777777664 4578
Q ss_pred EEEEECCCC-CCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce--EEEecCcccceEEEEEeCCCCE
Q 002511 167 IKIWNLGSP-DPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC--VQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 167 i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
|.+||++.+ .+...+++|...|+.+.|...... .+.+++.||+|+.||...... .+++ ....+|+.-++.|-|.-
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeecccccccccceec-cccCcceeccccccCce
Confidence 999999865 567788888888988888654333 588999999999999875332 2222 24556777777775542
Q ss_pred EEE--EECCCeEEEEeC---------CC-ceeEEEeecCCccEEEEEEecCCC----------EEEEEecCCeEEEEc
Q 002511 244 IIT--GSEDGTVRIWHA---------TT-YRLENTLNYGLERVWAIGYMKSSR----------RIVIGYDEGTIMVKI 299 (914)
Q Consensus 244 l~~--~~~dg~v~iwd~---------~~-~~~~~~~~~~~~~v~~i~~~~~~~----------~l~~~~~dg~i~i~~ 299 (914)
.+. .-.+..+.+++. .+ .+.+.++.+|...|....|...+. .|++-+.|..+++|.
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 222 111224444433 22 346788899988887777765433 689999999999984
No 290
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.9e-06 Score=86.01 Aligned_cols=211 Identities=11% Similarity=0.120 Sum_probs=135.5
Q ss_pred CCcEEEEeCCCCc--ee-EEeeecCCCeEEEEEecCCCEEEEEEC---CCEEEEEECCC--CeeeE--EEecCCCCEEEE
Q 002511 36 SGTVCIWNYQSQT--MA-KSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT--MDKVK--VFEAHTDYIRCV 105 (914)
Q Consensus 36 ~g~v~iwd~~~~~--~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~t--~~~~~--~~~~~~~~i~~~ 105 (914)
+.-|++|++.+.. .. ..+-...+.++-++|+|+++.|.++-. +|.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999987432 11 112235567899999999999998855 46777777764 44322 122223344889
Q ss_pred EEeCCCCEEEEEEc-CCeEEEEECCCCceEEEE--eecCccc----------EEEEEEccCCCCEEEEEeC-CCcEEEEE
Q 002511 106 AVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQI--FEGHSHY----------VMQVTFNPKDTNTFASASL-DRTIKIWN 171 (914)
Q Consensus 106 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~----------i~~~~~~p~~~~~l~~~~~-dg~i~vwd 171 (914)
+++++|++++++.. .|.|.++-++....+... ...|.+. +.+..+.| ++++++++.. --.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEE
Confidence 99999999998865 488999988653222221 1223333 77888999 8888887765 34689999
Q ss_pred CCCCCCcEEE---ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCC-ceEEEecC---------cccceEEEEEe
Q 002511 172 LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTK-SCVQTLEG---------HTHNVSAVCFH 238 (914)
Q Consensus 172 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~---------~~~~v~~i~~~ 238 (914)
+..++....- -....+..-|.|+|+++- ..+++--+++|.+|.+... ..+..++. .......|.++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~-aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKY-AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcE-EEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 9876543211 123456688999999983 2334445899999998763 22222221 12345677778
Q ss_pred CCCCEEEEEE
Q 002511 239 PELPIIITGS 248 (914)
Q Consensus 239 ~~~~~l~~~~ 248 (914)
|+|++|.++.
T Consensus 253 ~dGrFLYasN 262 (346)
T COG2706 253 PDGRFLYASN 262 (346)
T ss_pred CCCCEEEEec
Confidence 8887777653
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=8e-08 Score=104.87 Aligned_cols=192 Identities=11% Similarity=-0.011 Sum_probs=124.5
Q ss_pred CCEEEEEEcCCCCE-EEEEecC---CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC---CCEEEEEECCC
Q 002511 16 ERVKSVDLHPSEPW-ILASLYS---GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD---DMFIRVYNYNT 88 (914)
Q Consensus 16 ~~v~~~~~sp~~~~-la~~~~~---g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~vwd~~t 88 (914)
+.+....|||||+. ++..+.. ..|.++|+.+++..... ...+......|+|||+.|+.... +..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37789999999985 6644443 46999999888665433 35566777889999998876543 45788889887
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCC-
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD- 164 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d- 164 (914)
++.. .+..+........|+|||+.|+..+.. | .|.+.|+.++.....+..+. . ...|+| +++.++..+..
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SP-DG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVST-YKNYIVYSSRET 340 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECC-CCCEEEEEEcCC
Confidence 7643 344344334556899999988876643 2 68888988773322222222 1 248999 77777666543
Q ss_pred --------CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc-CC--eEEEEECCC
Q 002511 165 --------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD-DH--TAKVWDYQT 218 (914)
Q Consensus 165 --------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~ 218 (914)
..|.+.|+.++.. ..+... .......|+|+|.. ++.... .+ .+.+.++..
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~--I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGS--IMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCE--EEEEEccCCcEEEEEEecCC
Confidence 3688889877754 333332 23345889999884 433332 22 366667653
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=4.9e-07 Score=87.35 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=140.0
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCC--ceeEEeeec---CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 20 SVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFEVT---ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~---~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
.++.+++|+.||+.. |..|.|-..++. ..+..-..+ ...-+.++||||+..||.+.+.|+|++||+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 467889999888865 778888765543 233333332 23468899999999999999999999999874 33334
Q ss_pred Eec-------CCCCEEEEEEeCCC------CEEEEEEcCCeEEEEECCC----CceEEEEee---cCcccEEEEEEccCC
Q 002511 95 FEA-------HTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWEK----GWMCTQIFE---GHSHYVMQVTFNPKD 154 (914)
Q Consensus 95 ~~~-------~~~~i~~~~~s~~~------~~l~~~~~dg~i~iwd~~~----~~~~~~~~~---~~~~~i~~~~~~p~~ 154 (914)
+.. -...|..+.|.+.. ..|++-..+|.++-|-+.. +......+. .+...|.++.++| .
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-K 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-C
Confidence 332 12456777775532 2466667778888776532 212222222 2466899999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC------eEEEEECCCCceEEEecCc
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH------TAKVWDYQTKSCVQTLEGH 228 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~ 228 (914)
.++|++|+.... ..+. ......++++-.+-.+...-..++...++ +..+|.+-+.+........
T Consensus 159 h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred CCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 677777765322 0000 00112222222221111110011111111 1123332222221111224
Q ss_pred ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec
Q 002511 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (914)
...|..+..||||..|++...+|.|.+|++.+.++......
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 56799999999999999999999999999988776655543
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.2e-09 Score=112.35 Aligned_cols=280 Identities=12% Similarity=0.135 Sum_probs=189.3
Q ss_pred hhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCC-------ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEE
Q 002511 9 RKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQ-------TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFI 81 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 81 (914)
..+.||+..|+.++--.+.+-+++++.|.+|++|.++.. .+..++..|+.+|..+.|-.+-+.++++ ||-|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 467899999999988888888999999999999998642 3556777899999999999998887764 7889
Q ss_pred EEEECCCCeeeEEEe--cCCCCEEEEEEeC--CCCEEE-EEEcCCeEEEEECCCCceEEEEe-----ecCcccEEEEEEc
Q 002511 82 RVYNYNTMDKVKVFE--AHTDYIRCVAVHP--TLPYVL-SSSDDMLIKLWDWEKGWMCTQIF-----EGHSHYVMQVTFN 151 (914)
Q Consensus 82 ~vwd~~t~~~~~~~~--~~~~~i~~~~~s~--~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~~ 151 (914)
.+||.--++.+..+. ...+.+..+..-+ +...++ .++...+|+++|.+.. .....+ .+....+.+++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEec
Confidence 999987777665332 1112222333333 333444 4477899999999875 222222 2334568899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEE-EECCCCceEEEecCccc
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKV-WDYQTKSCVQTLEGHTH 230 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~ 230 (914)
| .++.++.+-.+|.|.+.|.++|+.+..++........++ .|..+ .++....|.++.+ |..-+|....+.+....
T Consensus 886 ~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq--~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 886 D-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQ--ALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred c-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhH--HHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 8 899999999999999999999988776665544443333 23322 5777778888888 87666655544443333
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEeCCC----ceeEEEee--cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 231 NVSAVCFHPELPIIITGSEDGTVRIWHATT----YRLENTLN--YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 231 ~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+...+ -.-|+-+++......+.+|--.. ...+..+. ...+..++++.-|-..-+..|...|.|.+
T Consensus 962 pahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 22111 12355667766666777774211 01111111 12356788888888888888888888865
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=3.8e-07 Score=99.58 Aligned_cols=210 Identities=15% Similarity=0.030 Sum_probs=132.0
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCE-EEEEEC---CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCC
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQW-VVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLP 112 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~---dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~ 112 (914)
..|.+-|.... ..+.+.... ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 45666665433 334344333 7888999999985 654433 3579999999887655543 455567788999998
Q ss_pred EEEEEEc---CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCCCcEEEecCCC
Q 002511 113 YVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL-DR--TIKIWNLGSPDPNFTLDAHQK 186 (914)
Q Consensus 113 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~ 186 (914)
.|+.... +..|.++|+.++ ...+. ..+........|+| |++.++..+. .+ .|.++|+.+++....... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~~~L-T~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TLTQI-TNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cEEEc-ccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 8765432 357888898877 33333 33333344568999 7766665553 33 588888887765333221 11
Q ss_pred CeeEEEEeeCCCcCEEEEEEcC---------CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCC---eEE
Q 002511 187 GVNCVDYFTGGDKPYLITGSDD---------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDG---TVR 254 (914)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg---~v~ 254 (914)
....|+|+|+. ++..... ..|.+.|+.++... .+... .......|+|||+.|+..+..+ .+.
T Consensus 322 --~~~~~SPDG~~--Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~ 395 (419)
T PRK04043 322 --NNSSVSTYKNY--IVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG 395 (419)
T ss_pred --cCceECCCCCE--EEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence 12489999984 4444332 36888898877643 33322 2334688999999887665432 366
Q ss_pred EEeCC
Q 002511 255 IWHAT 259 (914)
Q Consensus 255 iwd~~ 259 (914)
+.++.
T Consensus 396 ~~~l~ 400 (419)
T PRK04043 396 IIRLN 400 (419)
T ss_pred EEecC
Confidence 66665
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=3.3e-09 Score=113.20 Aligned_cols=243 Identities=19% Similarity=0.258 Sum_probs=177.7
Q ss_pred EEEEEEcCCC--CEEEEEecCCcEEEEeCCC---CceeEEeeecCCCeEEEEEecCC-CEEEEEECCCEEEEEECCCCee
Q 002511 18 VKSVDLHPSE--PWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 18 v~~~~~sp~~--~~la~~~~~g~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
|-.+.|+|.. ++-++...+..-.||++.. ......+.+|...|+.+.|+|.. ..+++++.|..+..||+++...
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 6677787743 3444545566778999753 34555678899999999999965 5688999999999999987543
Q ss_pred -eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 92 -VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 92 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
+..+..-...-..++|+-..+.+++.+....|.+||.+.+..+...+++|...|..+.|+......+.+++.||+|++|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 3334333445678999987777777777889999999998888999999999999999988667789999999999999
Q ss_pred ECCCCCCc-EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE---------CCC-CceEEEecCcccceEEEEEeC
Q 002511 171 NLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD---------YQT-KSCVQTLEGHTHNVSAVCFHP 239 (914)
Q Consensus 171 d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~v~~i~~~~ 239 (914)
|....... ........+|..-++.|-|++.++.-.-.+..+.+++ ..+ .+++++|.||...|....|-.
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 98654322 2223345667777777777763333222223444433 322 467899999999887777654
Q ss_pred CCC----------EEEEEECCCeEEEEeCCC
Q 002511 240 ELP----------IIITGSEDGTVRIWHATT 260 (914)
Q Consensus 240 ~~~----------~l~~~~~dg~v~iwd~~~ 260 (914)
.+. .|++-+.|..+++|-+.+
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccH
Confidence 332 688999999999998753
No 296
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=3.9e-06 Score=79.32 Aligned_cols=189 Identities=11% Similarity=-0.016 Sum_probs=116.2
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEE
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVA 106 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~ 106 (914)
..+++.|+..+.+.--|..+|+.+..-. ...++.+-+.- -|++++.|+.+|.+++.+.+||.+...+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577889999999999999998775433 33344443333 577899999999999999999988887764333223345
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe--cC
Q 002511 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AH 184 (914)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~ 184 (914)
..+++..+..|+.|++.+..|.++. .+....+...+...+-+..| ....|..+...|.+.--..+.... ..+- ..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~ 177 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKNPYSS-TEFWAATR 177 (354)
T ss_pred EcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC-CCceEEEEeccceEEEEccCCCCc-ceehhhhc
Confidence 6678899999999999999999886 33333332223334445666 344555555566665554433311 1111 11
Q ss_pred CCCeeE--EEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec
Q 002511 185 QKGVNC--VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 185 ~~~v~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 226 (914)
.+++.. ++.. . .+..+.-||.+.-+| ..|+.+..+.
T Consensus 178 ~~PiF~splcv~---~--sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 178 FGPIFASPLCVG---S--SVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred CCccccCceecc---c--eEEEEEeccEEEEEc-CCCcEEEeec
Confidence 223322 1111 1 355556666666666 4455555443
No 297
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.4e-06 Score=85.27 Aligned_cols=251 Identities=12% Similarity=0.137 Sum_probs=164.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEec---CCcEEEEeCCC--CceeE--EeeecCCCeEEEEEecCCCEEEEEEC-CCEEEE
Q 002511 12 AQRSERVKSVDLHPSEPWILASLY---SGTVCIWNYQS--QTMAK--SFEVTELPVRSAKFVARKQWVVAGAD-DMFIRV 83 (914)
Q Consensus 12 ~~h~~~v~~~~~sp~~~~la~~~~---~g~v~iwd~~~--~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~v 83 (914)
..+.+.++-|+|+|+++.|.++-. .|.|.-|.+.. |++.. .......+.+.++++++|++++++.. .|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 346778999999999999998755 46777777664 54322 22223344588999999999998876 689999
Q ss_pred EECCC-CeeeE--EEecCCCC----------EEEEEEeCCCCEEEEEEc-CCeEEEEECCCCceEEEEe---ecCcccEE
Q 002511 84 YNYNT-MDKVK--VFEAHTDY----------IRCVAVHPTLPYVLSSSD-DMLIKLWDWEKGWMCTQIF---EGHSHYVM 146 (914)
Q Consensus 84 wd~~t-~~~~~--~~~~~~~~----------i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~~~~i~ 146 (914)
+-++. |.... ..-.|.+. +.+..+.|++++|++..- --.|.+|++..+ .+.... -.......
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg-~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG-KLTPADPAEVKPGAGPR 194 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC-ccccccccccCCCCCcc
Confidence 98865 33322 12234444 889999999999988753 236999999866 222211 12234468
Q ss_pred EEEEccCCCCEEEEEe-CCCcEEEEECCCC-CCcEEEe---------cCCCCeeEEEEeeCCCcCEEEEEEc-CCeEEEE
Q 002511 147 QVTFNPKDTNTFASAS-LDRTIKIWNLGSP-DPNFTLD---------AHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVW 214 (914)
Q Consensus 147 ~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iw 214 (914)
.|.|+| ++.+..+.+ .+++|.+|..+.. .....++ ........+.++++|+ +|.++.. ...|.+|
T Consensus 195 Hi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--FLYasNRg~dsI~~f 271 (346)
T COG2706 195 HIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--FLYASNRGHDSIAVF 271 (346)
T ss_pred eEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--EEEEecCCCCeEEEE
Confidence 899999 777766544 5899999998764 1122221 1223455677888776 6666543 3467777
Q ss_pred ECCC--Cce--EEEecCcccceEEEEEeCCCCEEEEEECCC-eEEEEeC--CCceeEEE
Q 002511 215 DYQT--KSC--VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHA--TTYRLENT 266 (914)
Q Consensus 215 d~~~--~~~--~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~v~iwd~--~~~~~~~~ 266 (914)
.+.. ++. +.....+...-....++|.|++|+++.+++ .|.+|.. .+|++...
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 6653 322 222233444467889999999999888654 5777754 45665433
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.8e-09 Score=111.14 Aligned_cols=242 Identities=13% Similarity=0.158 Sum_probs=168.9
Q ss_pred eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC-------CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC
Q 002511 49 MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (914)
Q Consensus 49 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 121 (914)
.+..+.+|...|+.++-..+.+-+++++.|.+|++|.++. ..+..++..|..+|..+.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456778988999888877888899999999999999863 23566778999999999999998887765 78
Q ss_pred eEEEEECCCCceEEEEee-cCcccEEEEEEccC-CCCEEE-EEeCCCcEEEEECCCCCCcEEEe-----cCCCCeeEEEE
Q 002511 122 LIKLWDWEKGWMCTQIFE-GHSHYVMQVTFNPK-DTNTFA-SASLDRTIKIWNLGSPDPNFTLD-----AHQKGVNCVDY 193 (914)
Q Consensus 122 ~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~p~-~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~ 193 (914)
.|.+||.--+..+.+... ...+.+..+..-|. +...++ .|+...+|+++|.+.......++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 899999876633333322 11222333333332 334444 44778999999999887665553 33456789999
Q ss_pred eeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEE-EeCCCceeEEEeecCCc
Q 002511 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI-WHATTYRLENTLNYGLE 272 (914)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~ 272 (914)
.+.|+ .++++-++|.|.+.|.++|+.+...+...-....++- |..+.++....|.++.+ |....+....+.+.+..
T Consensus 885 a~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 885 ADKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred ccCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 98888 6999999999999999999988877755544444443 44457777778889988 98887776666554433
Q ss_pred cEEEEEEecCCCEEEEEecCCeEEE
Q 002511 273 RVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 273 ~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+..-+. .-|..+++......+.+
T Consensus 962 pahflq--svgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 962 PAHFLQ--SVGPSLVTAQNGNILGV 984 (1034)
T ss_pred chhhhh--ccCceeEEeccCcEEEE
Confidence 322111 12445665555555544
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.1e-08 Score=102.44 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=120.4
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCce----eEEeeecCCCeEEEEEecCCCEEEEEE---CCCEEEEEECCCC
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM----AKSFEVTELPVRSAKFVARKQWVVAGA---DDMFIRVYNYNTM 89 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~vwd~~t~ 89 (914)
.+..+..+|.+++||++..+....++++..... ...+. -...-+++.|..+.....++. +...+.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 455667788999999988877777777654432 22222 223345566666655555544 3456666666554
Q ss_pred eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEE
Q 002511 90 DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI 169 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (914)
.. ..+-+|-..++.++|+||+++|+++..|..|++-.......+.....||...|..++.-+ +..|++++.|++|++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEE
Confidence 33 334479999999999999999999999999999888776566667778999999999986 667999999999999
Q ss_pred EECCCCCCcEEEe
Q 002511 170 WNLGSPDPNFTLD 182 (914)
Q Consensus 170 wd~~~~~~~~~~~ 182 (914)
||+.+++.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998875553
No 300
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=8.7e-07 Score=107.69 Aligned_cols=236 Identities=10% Similarity=0.073 Sum_probs=158.4
Q ss_pred EEEEEecC-CCEEEEEECCCEEEEEECCCCeeeEEEec-C-------------CCCEEEEEEeCCCCEEEEEEc-CCeEE
Q 002511 61 RSAKFVAR-KQWVVAGADDMFIRVYNYNTMDKVKVFEA-H-------------TDYIRCVAVHPTLPYVLSSSD-DMLIK 124 (914)
Q Consensus 61 ~~~~~s~~-~~~l~~g~~dg~i~vwd~~t~~~~~~~~~-~-------------~~~i~~~~~s~~~~~l~~~~~-dg~i~ 124 (914)
..++++++ +..+++-+.++.|++||.. ++.+..+.. . -.....++++++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5556666678899999976 454444432 1 123578999998887766554 57799
Q ss_pred EEECCCCceEEEEeec-C---------------cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEec-----
Q 002511 125 LWDWEKGWMCTQIFEG-H---------------SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDA----- 183 (914)
Q Consensus 125 iwd~~~~~~~~~~~~~-~---------------~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----- 183 (914)
.+|..++ ........ . -.....++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 650 ~id~~~~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNE-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCC-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 9998876 33222110 0 0124578999966777788888899999998765422 2211
Q ss_pred ----------CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC---------------------cccce
Q 002511 184 ----------HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG---------------------HTHNV 232 (914)
Q Consensus 184 ----------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~v 232 (914)
.-.....++++|+++. ++++-+.++.|++||+.++.......+ .-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1123467899998764 455666679999999987653211100 01123
Q ss_pred EEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec-------------CCccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 233 SAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY-------------GLERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 233 ~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
.+++++++|.++++-+.++.|++||..++........ .......++++++|+.+++.+.++.|+++.
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 5889999999888888899999999987765533221 123567899999999888888889998864
Q ss_pred C
Q 002511 300 G 300 (914)
Q Consensus 300 ~ 300 (914)
.
T Consensus 887 ~ 887 (1057)
T PLN02919 887 L 887 (1057)
T ss_pred C
Confidence 4
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.95 E-value=5.5e-09 Score=98.05 Aligned_cols=161 Identities=15% Similarity=0.247 Sum_probs=106.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCcee-EEeeecCCCeEEEEEecCCCEEEEEE-----CCCEEEEEECC
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMA-KSFEVTELPVRSAKFVARKQWVVAGA-----DDMFIRVYNYN 87 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~-----~dg~i~vwd~~ 87 (914)
|+++-.+-+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++. .-+..+.|+++
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccc
Confidence 3333333333445667999999999999997652111 11111111112223333444444432 12345666665
Q ss_pred CCeeeEEEecCCCCEEEEEEeCCCC-EEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 88 TMDKVKVFEAHTDYIRCVAVHPTLP-YVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 88 t~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
..+....-....+.|++++-+|..+ .+++|+.||.+.+||+++...+...+..|+..|..+.|+|+++..|++++.||.
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 4333222222334599999999654 567888899999999999877778889999999999999999999999999999
Q ss_pred EEEEECCC
Q 002511 167 IKIWNLGS 174 (914)
Q Consensus 167 i~vwd~~~ 174 (914)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999765
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.94 E-value=2.8e-06 Score=86.77 Aligned_cols=218 Identities=10% Similarity=0.068 Sum_probs=147.7
Q ss_pred EEEEec-CCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEe-CCCCEEEEEEcCCeEEEEECCCCceEEEEee
Q 002511 62 SAKFVA-RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVH-PTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE 139 (914)
Q Consensus 62 ~~~~s~-~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 139 (914)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+.+. ++ ..++++...+ +.++|..++ .......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g-~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTG-KVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTT-EEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCC-cEEEEee
Confidence 578998 66666666678999999998865543 33222 6778888 55 4666666655 566698887 4443333
Q ss_pred c-----CcccEEEEEEccCCCCEEEEEeCC--------CcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 140 G-----HSHYVMQVTFNPKDTNTFASASLD--------RTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 140 ~-----~~~~i~~~~~~p~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
. .......+++.| ++++.++.... |.|..++.. ++. ..+...-...+.++|+|+++. ++++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~-lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKT-LYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSE-EEEEET
T ss_pred ccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchh-eeeccc
Confidence 2 346688999999 78877766543 557777776 443 333334556789999999873 445666
Q ss_pred cCCeEEEEECCCCce-------EEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEE
Q 002511 207 DDHTAKVWDYQTKSC-------VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (914)
Q Consensus 207 ~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (914)
..+.|..+++..... ...+....+..-.+++..+|++.++....+.|.+++.. |+.+..+..+...+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 788899999853221 12222222347789999999988888889999999977 9988888887678999999
Q ss_pred e-cCCCEEEEEe
Q 002511 280 M-KSSRRIVIGY 290 (914)
Q Consensus 280 ~-~~~~~l~~~~ 290 (914)
. ++.+.|.+.+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 4 6667666654
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=5.6e-07 Score=91.78 Aligned_cols=221 Identities=11% Similarity=0.012 Sum_probs=145.4
Q ss_pred CCcEEEEeCCCCceeEEeeecCCCeEEEE--EecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 36 SGTVCIWNYQSQTMAKSFEVTELPVRSAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 36 ~g~v~iwd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
+|.|..||..+|+.+....... ...... ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 6889999999999988876421 122222 344677788889999999999999999888875 22222112 223556
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCc---ccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCe--
Q 002511 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHS---HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGV-- 188 (914)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-- 188 (914)
+++++.++.|..+|..++...-+...... .......... .++.++++..++.|..+|+.+|+.+..........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 77788889999999998855444222221 1112222222 36788888889999999999999887776543221
Q ss_pred --------eEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 189 --------NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 189 --------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
..-... .++ .++.++.++.+..+|..+++.+.... ...+.. ...+.+..|++++.++.|.+||+.+
T Consensus 158 ~~~~~~~~~~~~~~-~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 158 PISSFSDINGSPVI-SDG--RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -EEEETTEEEEEEC-CTT--EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred ceeeecccccceEE-ECC--EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence 111111 222 57777777754444999998765433 222222 2456677888888999999999999
Q ss_pred ceeEEE
Q 002511 261 YRLENT 266 (914)
Q Consensus 261 ~~~~~~ 266 (914)
|+....
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 997654
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.93 E-value=2.9e-07 Score=87.05 Aligned_cols=226 Identities=10% Similarity=-0.004 Sum_probs=148.6
Q ss_pred ecCCcEEEEeCCCCc--eeEEeeecCCCeEEEEEec-----CCCEEEEEECCCEEEEEECCCCeeeE-EEecCCCCEEEE
Q 002511 34 LYSGTVCIWNYQSQT--MAKSFEVTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNTMDKVK-VFEAHTDYIRCV 105 (914)
Q Consensus 34 ~~~g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~s~-----~~~~l~~g~~dg~i~vwd~~t~~~~~-~~~~~~~~i~~~ 105 (914)
+....|.+|+.-+.. .+... ..+.|.| ...+|+.|+..|...+|...+.+... ....|...|+-.
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 345567888876543 22222 2344444 34579999999999999998755432 233344433322
Q ss_pred EEeCC-CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC-c-E-EE
Q 002511 106 AVHPT-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-N-F-TL 181 (914)
Q Consensus 106 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~-~-~~ 181 (914)
.=..+ ...+..++.|.++++.+++.+ ..........-.+.++++++ ++.++++.+....|..|.+..... + . ..
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~-s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGD-SNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecC-cccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 11111 234677888889999888765 22222211223378899999 899999999999999998865432 2 2 22
Q ss_pred ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE-----EecCcccceEEEEEeCCCC--EEEEEECCCeEE
Q 002511 182 DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-----TLEGHTHNVSAVCFHPELP--IIITGSEDGTVR 254 (914)
Q Consensus 182 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~i~~~~~~~--~l~~~~~dg~v~ 254 (914)
......-.+..|+.... .+++++.||++.|||++...... +-..|.+.+..+.|++.|. +|+..-.-+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred cccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEE
Confidence 33344456777876655 79999999999999998754322 2234788899999998664 455555567899
Q ss_pred EEeCCCceeEEEeecC
Q 002511 255 IWHATTYRLENTLNYG 270 (914)
Q Consensus 255 iwd~~~~~~~~~~~~~ 270 (914)
+.|+++++..+.+...
T Consensus 278 v~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIP 293 (344)
T ss_pred EEEcccCceeeEEecC
Confidence 9999999866555443
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=1.3e-06 Score=96.14 Aligned_cols=259 Identities=11% Similarity=-0.033 Sum_probs=158.8
Q ss_pred CCCEEEEEecCCcEEEEeCCCCceeEEeeecCC-Ce-E-----EEE--EecCCCEEEEEECCCEEEEEECCCCeeeEEEe
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTEL-PV-R-----SAK--FVARKQWVVAGADDMFIRVYNYNTMDKVKVFE 96 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v-~-----~~~--~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~ 96 (914)
.+..+++++.+|.+.-+|..+|+.+........ .. . .+. -.-.+..+++++.+|.+..+|.++|+.+....
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 356778888889999999999988876653221 00 0 000 01135678888899999999999999988776
Q ss_pred cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCccc----EEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 002511 97 AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHY----VMQVTFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----i~~~~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
.......+.... +..+++++.+|.|..+|..++...-+........ ..+-.. .+..++.++.+|.+..+|.
T Consensus 148 ~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 148 VAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred CCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEc
Confidence 433222222222 3467778889999999999884433221111100 001111 1345777888999999999
Q ss_pred CCCCCcEEEecCCC-------CeeEEEEee--CCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCE
Q 002511 173 GSPDPNFTLDAHQK-------GVNCVDYFT--GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPI 243 (914)
Q Consensus 173 ~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 243 (914)
.+++.......... ....+..+| .++ .+++++.+|.+..+|..+|+.+...... ....+.. .+..
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~ 296 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG--VVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGR 296 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECC--EEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCE
Confidence 98887665432110 000111111 122 5777888999999999999887665421 1112222 3557
Q ss_pred EEEEECCCeEEEEeCCCceeEEEeecCCcc-EEEEEEecCCCEEEEEecCCeEEE
Q 002511 244 IITGSEDGTVRIWHATTYRLENTLNYGLER-VWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
|+.++.+|.+..+|..+|+.+......... ..+... .+.++++++.+|.+..
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 778888999999999999877654322111 112222 2456777888887765
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1e-09 Score=119.02 Aligned_cols=266 Identities=14% Similarity=0.179 Sum_probs=185.2
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCC--EE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDM--FI 81 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i 81 (914)
+|...+.|..|...-+|++|+-+.+.|++|+..|.|++|++.+|........|..+|+-+.-+.+|..+++.+... ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4566778889999999999999999999999999999999999999999999999999999999999888765533 56
Q ss_pred EEEECCC-CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC---cccEEEEEEccCCCCE
Q 002511 82 RVYNYNT-MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH---SHYVMQVTFNPKDTNT 157 (914)
Q Consensus 82 ~vwd~~t-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~p~~~~~ 157 (914)
.+|+..+ +...++|.. -.++.|+...+.-+.|+.-....+||+.++..+...+.+. ...-.+..|+| +..+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-Ccce
Confidence 7899863 445555543 3578888776555666665678999999985555544321 22236778999 4444
Q ss_pred EEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEE
Q 002511 158 FASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF 237 (914)
Q Consensus 158 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 237 (914)
++ .|| .+||.+..+.+..+......+ .-.|+|+|.. +++.+ .|||+++.+.++....-. -+.+.|
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~e--VIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtF 1309 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNE--VIINS-----EIWDMRTFKLLHSVPSLD--QCAVTF 1309 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCce--EEeec-----hhhhhHHHHHHhcCcccc--ceEEEe
Confidence 43 355 479999887776665433222 2358888874 55554 489999988777665332 356788
Q ss_pred eCCCCEEEEEE--CC---------------CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEe
Q 002511 238 HPELPIIITGS--ED---------------GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGY 290 (914)
Q Consensus 238 ~~~~~~l~~~~--~d---------------g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 290 (914)
+..|..+...- .| ...+-++...+..+.++... ..+..++-+|...++++-.
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEEEe
Confidence 88877554322 00 12444555556666666544 4456666666666665543
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=4.4e-06 Score=85.35 Aligned_cols=217 Identities=12% Similarity=0.114 Sum_probs=144.3
Q ss_pred EEEEcC-CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEe-cCCCEEEEEECCCEEEEEECCCCeeeEEEec
Q 002511 20 SVDLHP-SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFV-ARKQWVVAGADDMFIRVYNYNTMDKVKVFEA 97 (914)
Q Consensus 20 ~~~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~ 97 (914)
++.|.+ ++.++++-...+.|+.|+..++... .+.... ...+++. +++ .|+++...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578998 6666666666899999998777543 233222 6777888 564 555555554 55669998866544442
Q ss_pred -----CCCCEEEEEEeCCCCEEEEEEcC--------CeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE-EEEeC
Q 002511 98 -----HTDYIRCVAVHPTLPYVLSSSDD--------MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF-ASASL 163 (914)
Q Consensus 98 -----~~~~i~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l-~~~~~ 163 (914)
.....+.+++.|+|++.++.... |.|..++.. + ....... .-.....++|+| +++.| ++-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVAD-GLGFPNGIAFSP-DGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEE-EESSEEEEEEET-TSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEec-CcccccceEECC-cchheeecccc
Confidence 34568899999999866665543 567777777 3 3333333 234578999999 67655 46677
Q ss_pred CCcEEEEECCCCCC-c---EEE---ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEE
Q 002511 164 DRTIKIWNLGSPDP-N---FTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (914)
Q Consensus 164 dg~i~vwd~~~~~~-~---~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 236 (914)
.+.|..+++..... + ..+ ....+....+++..+|+ +.++....+.|.++|.+ |+.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88899999864332 1 112 22223467888877775 67777788999999987 888888876656899999
Q ss_pred Ee-CCCCEEEEEE
Q 002511 237 FH-PELPIIITGS 248 (914)
Q Consensus 237 ~~-~~~~~l~~~~ 248 (914)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 5656555443
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=3.4e-06 Score=84.47 Aligned_cols=232 Identities=12% Similarity=0.121 Sum_probs=158.7
Q ss_pred CCEEEEEEcC-CCCEEEEEecCCc-EEEEeCCCCceeEEeeecCCCe--EEEEEecCCCEEEEEE-----CCCEEEEEEC
Q 002511 16 ERVKSVDLHP-SEPWILASLYSGT-VCIWNYQSQTMAKSFEVTELPV--RSAKFVARKQWVVAGA-----DDMFIRVYNY 86 (914)
Q Consensus 16 ~~v~~~~~sp-~~~~la~~~~~g~-v~iwd~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~g~-----~dg~i~vwd~ 86 (914)
.+...++.+| .+..++.+-.-|. ..+||..+++....+....+.- -.-.||+||++|++.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4566789999 4556666766655 7889999999888776544332 2367999999999863 3689999999
Q ss_pred C-CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEc------------------CCeEEEEECCCCceEEE-Ee--ecCccc
Q 002511 87 N-TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD------------------DMLIKLWDWEKGWMCTQ-IF--EGHSHY 144 (914)
Q Consensus 87 ~-t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~-~~--~~~~~~ 144 (914)
. +.+.+..+..|.-....+.+.|||+.|+++.. +.++...|..++..+.+ .+ ..|..+
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 8 77888889888777788999999988887631 33566667777743333 23 347778
Q ss_pred EEEEEEccCCCCEEEEEeCCCc-------EEEEECCCCCCcEEE-------ecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 145 VMQVTFNPKDTNTFASASLDRT-------IKIWNLGSPDPNFTL-------DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 145 i~~~~~~p~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
|..+++.+ ++..++..-..|. |-+++. +.....+ ......+-+|+++.++.. +.+++=..+.
T Consensus 165 iRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~-ia~tsPrGg~ 240 (305)
T PF07433_consen 165 IRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL-IAVTSPRGGR 240 (305)
T ss_pred eeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE-EEEECCCCCE
Confidence 99999998 6655554443332 333332 2222222 234567889999988762 3344556788
Q ss_pred EEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEE
Q 002511 211 AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~i 255 (914)
+.+||..++..+....- ..+..++..+++ ++++.+ .|.+..
T Consensus 241 ~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred EEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC-CccEEE
Confidence 99999999998876653 346778888877 555554 445433
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.85 E-value=2.4e-05 Score=85.07 Aligned_cols=184 Identities=17% Similarity=0.226 Sum_probs=94.4
Q ss_pred ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE-cCCCcceeE
Q 002511 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK-IGREEPVAS 307 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~-~~~~~~~~~ 307 (914)
......+.++|+|+++++++ +|.-.|+.....+.... +.-...+|.+.+ .+|+-..++.|.+. .........
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence 33467899999999999855 77888888555444332 333567888854 46665556666662 111111000
Q ss_pred EcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeeccccc
Q 002511 308 MDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNR 387 (914)
Q Consensus 308 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~~~~~ 387 (914)
+. . +..+..+-. |.+|.+.+++.+.+|+....+..
T Consensus 105 i~----------------------------------~--------~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i 139 (443)
T PF04053_consen 105 IK----------------------------------L--------PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLI 139 (443)
T ss_dssp ---------------------------------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EE
T ss_pred Ec----------------------------------C--------CcccceEEc---CcEEEEECCCCEEEEEhhHccee
Confidence 00 0 001112222 88899988889999988766422
Q ss_pred ---ccCceeEEEEecCCcEEEEecCCeEEEeccCcccceeeecCcccceeecCcEEEEEeCCeEEEEeccCCcEEEEEEc
Q 002511 388 ---SFGSALEFVWSSDGEYAVRESSSKIKIFSKNFQEKRSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDV 464 (914)
Q Consensus 388 ---~~~~~~~~~~s~~~~~l~~~~~~~i~v~~~~~~~~~~~~~~~s~~~i~~g~~La~~~~~~i~~~d~~~~~~i~~~~~ 464 (914)
....+..+.|+++|.+++..++..+.|++.+...... ...+ |-.+ .-..+..+..
T Consensus 140 ~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~----~~~~----------g~e~--------~f~~~~E~~~ 197 (443)
T PF04053_consen 140 RRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA----IPEE----------GVED--------AFELIHEISE 197 (443)
T ss_dssp EEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH----BTTT----------B-GG--------GEEEEEEE-S
T ss_pred eEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc----cccc----------Cchh--------ceEEEEEecc
Confidence 2334688999999999998888888887654432221 0111 0000 1123445556
Q ss_pred ceeEEEEcCCCCEEEEEeCCeEEE
Q 002511 465 TVKNLYWADSGDLVAIASDTSFYI 488 (914)
Q Consensus 465 ~i~~v~~s~dg~~la~~~~~~~~~ 488 (914)
.|++..|..| .++..+...+.+
T Consensus 198 ~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 198 RIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp --SEEEEETT--EEEEE-TTEEEE
T ss_pred eeEEEEEEcC--EEEEEcCCeEEE
Confidence 8889999877 555555554443
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1.8e-06 Score=94.93 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=161.2
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEE-EEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCE---
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRS-AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYI--- 102 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i--- 102 (914)
+..+++++.+|.+.-+|..+|+.+....... .+.+ ... .+..+++++.+|.|..+|..+|+.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567778889999999999999887766432 2221 111 24567778889999999999999988776431111
Q ss_pred --EEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCc---c---cEEEEEEcc-CCCCEEEEEeCCCcEEEEECC
Q 002511 103 --RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS---H---YVMQVTFNP-KDTNTFASASLDRTIKIWNLG 173 (914)
Q Consensus 103 --~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~---~i~~~~~~p-~~~~~l~~~~~dg~i~vwd~~ 173 (914)
.+.... +..++.++.+|.+..+|..++...-..-.... . ....+..+| -.++.+++++.+|.+..+|..
T Consensus 197 ~~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 111111 23577788899999999888733221110000 0 000111111 024567777889999999999
Q ss_pred CCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCccc-ceEEEEEeCCCCEEEEEECCCe
Q 002511 174 SPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPIIITGSEDGT 252 (914)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~~dg~ 252 (914)
+++...+.... ....+.. .++ .++.++.+|.+..+|..+|+.+........ ...+.... +..|+.++.+|.
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~ 346 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGG--RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGY 346 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECC--EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCE
Confidence 99876654321 1112222 233 588888999999999999987765432111 12222222 457888899999
Q ss_pred EEEEeCCCceeEEEeecCCccEEE-EEEecCCCEEEEEecCCeEEE
Q 002511 253 VRIWHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 253 v~iwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~~dg~i~i 297 (914)
|+++|..+|+.+.........+.+ ..+ .+..|++++.+|.++.
T Consensus 347 l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 347 LHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 999999999988877654333332 222 2457888888988765
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=7.1e-08 Score=90.73 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCCc------------eeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQT------------MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
|+.+.++.+- .|+++..++.+..+...++. ..+.+.-|..+-.+-..+-.+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666666544 36666666655555443322 2233333444433334444567799999999999998
Q ss_pred CCCCeee-EEEe-cCCCCEEEEEEeCCCCEEEEEE-----cCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 86 YNTMDKV-KVFE-AHTDYIRCVAVHPTLPYVLSSS-----DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 86 ~~t~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
.+.-..+ ..+. .|.+. .+.+....++.+.++. .-+..+.|+++........... ...|.+++-+|...+++
T Consensus 118 ~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLV 195 (319)
T ss_pred chHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEE
Confidence 7641111 1111 11111 1222233344444332 2245667776654222222222 23389999999778889
Q ss_pred EEEeCCCcEEEEECCCCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 159 ASASLDRTIKIWNLGSPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
++|+.||.+.+||.++.. +...+..|+.+++.+-|+|.... .|++++.||.+..||..+
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence 999999999999998864 34556789999999999997654 799999999999999764
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.3e-09 Score=116.50 Aligned_cols=220 Identities=17% Similarity=0.218 Sum_probs=163.5
Q ss_pred ceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC--eEEE
Q 002511 48 TMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM--LIKL 125 (914)
Q Consensus 48 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i 125 (914)
+..++|..|+...+|++|+.+.++|++|+..|.|++|++.+|.......+|...|+.+.-+.+|..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44566777888999999999999999999999999999999999999999999999999999998877665433 4678
Q ss_pred EECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE-e---cCCCCeeEEEEeeCCCcCE
Q 002511 126 WDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-D---AHQKGVNCVDYFTGGDKPY 201 (914)
Q Consensus 126 wd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~ 201 (914)
|+..+.....+.+.. -.++.|+. ....-+.|+......+||+.++.+..++ . +....-++..|+|..+ +
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~--L 1244 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT--L 1244 (1516)
T ss_pred hccccccCccccccc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc--e
Confidence 998764444555443 34677876 3444455666677899999998877663 2 1223337888998876 3
Q ss_pred EEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEec
Q 002511 202 LITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMK 281 (914)
Q Consensus 202 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 281 (914)
++ .|| .+||.+..+.++.|......+ .-.|+|.|.-++..++ |||++|.++++....-. -..+.|+.
T Consensus 1245 Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEecc
Confidence 33 344 479999888888777555333 3469999998888664 79999999887665432 25667777
Q ss_pred CCCEEE
Q 002511 282 SSRRIV 287 (914)
Q Consensus 282 ~~~~l~ 287 (914)
.|..+.
T Consensus 1312 tG~VmY 1317 (1516)
T KOG1832|consen 1312 TGDVMY 1317 (1516)
T ss_pred Cccchh
Confidence 666544
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=8.2e-08 Score=96.35 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=115.2
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCee----eEEEecCCCCEEEEEEeCCCCEEEEE---EcCCeEEEEECCCC
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK----VKVFEAHTDYIRCVAVHPTLPYVLSS---SDDMLIKLWDWEKG 131 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~ 131 (914)
.+..+..++.++++|++..+....++++..... ..... -...-+++.|-.+...+..+ ++...+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 345566788899999998888877777654332 22221 22233445555544444444 44455666665543
Q ss_pred ceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 132 WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 132 ~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
......+|-+.+..++|+| |+..++++..|..|++-.......+..+ -+|..-|..++..++- .|++++.|++
T Consensus 143 --~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~t 216 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKT 216 (390)
T ss_pred --CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCc
Confidence 3445568999999999999 8899999999999999887665555444 4699999999987654 5899999999
Q ss_pred EEEEECCCCceEEEec
Q 002511 211 AKVWDYQTKSCVQTLE 226 (914)
Q Consensus 211 i~iwd~~~~~~~~~~~ 226 (914)
|++||+.+|+++.++.
T Consensus 217 lr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCD 232 (390)
T ss_pred EEEEecccCCcccccc
Confidence 9999999999887664
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.1e-06 Score=92.67 Aligned_cols=204 Identities=14% Similarity=0.152 Sum_probs=131.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEE-eeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKV 92 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~ 92 (914)
|..+|.--+++..+++++.|+..|.|++|+-..+...+. ..+..+.+..+..|++..++|.|+..|.|.++-++.+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 566788888888999999999999999999666654332 2234566777788999999999999999999988764321
Q ss_pred E-----EE-ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC---ceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 93 K-----VF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG---WMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 93 ~-----~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
. .. ..|...|++++|++++..+++|...|.|..-.+++. ....+.+....+.|..+.... +.+|++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl- 188 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL- 188 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh-
Confidence 1 11 247889999999999999999999999999888761 112233334567788888763 44444433
Q ss_pred CCcEEEEECCCCCCcEEE--ecCCC-CeeEEEEeeC---CCcCEEEEEEcCCeEEEEECCC-CceEEE
Q 002511 164 DRTIKIWNLGSPDPNFTL--DAHQK-GVNCVDYFTG---GDKPYLITGSDDHTAKVWDYQT-KSCVQT 224 (914)
Q Consensus 164 dg~i~vwd~~~~~~~~~~--~~~~~-~v~~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-~~~~~~ 224 (914)
-+.+ +++....+ +.++ +...+ .-...+|.|. ++.+.|+++--. .++|..+- |..+++
T Consensus 189 ~r~~-Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 189 TRCI-LCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVIKT 252 (726)
T ss_pred hhhh-eeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEEEe
Confidence 3332 34443322 1111 11111 1245666665 344456555444 45564331 444443
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.73 E-value=2.5e-05 Score=78.47 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=152.0
Q ss_pred CeEEEEEec-CCCEEEEEECCC-EEEEEECCCCeeeEEEecCCCCE--EEEEEeCCCCEEEEEEc-----CCeEEEEECC
Q 002511 59 PVRSAKFVA-RKQWVVAGADDM-FIRVYNYNTMDKVKVFEAHTDYI--RCVAVHPTLPYVLSSSD-----DMLIKLWDWE 129 (914)
Q Consensus 59 ~v~~~~~s~-~~~~l~~g~~dg-~i~vwd~~t~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~-----dg~i~iwd~~ 129 (914)
....++.+| ++..++.+-.-| ...+||..+++....+....+.- -...||+||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 445555665544 67899999999888776544432 24689999999998743 4899999999
Q ss_pred CCceEEEEeecCcccEEEEEEccCCCCEEEEEeC------------------CCcEEEEECCCCCCcEE--E--ecCCCC
Q 002511 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL------------------DRTIKIWNLGSPDPNFT--L--DAHQKG 187 (914)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~--~--~~~~~~ 187 (914)
.+......+..|.-....+.+.| |+..|+++.. +-.+...|..+++.+.+ + ..|...
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 66566667776665566788999 7777776632 23456666777776655 3 236678
Q ss_pred eeEEEEeeCCCcCEEEEEEc-CC-------eEEEEECCCCceEEEec-------CcccceEEEEEeCCCCEEEEEE-CCC
Q 002511 188 VNCVDYFTGGDKPYLITGSD-DH-------TAKVWDYQTKSCVQTLE-------GHTHNVSAVCFHPELPIIITGS-EDG 251 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg-------~i~iwd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~~~~-~dg 251 (914)
+.-+++.+++. ++.+.. .| .|.+++. +..+..+. ...+.+-+|++++++..+++.+ ..|
T Consensus 165 iRHLa~~~~G~---V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 165 IRHLAVDGDGT---VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred eeeEEecCCCc---EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 88888888774 444432 22 2344432 22222222 2346789999999998776655 667
Q ss_pred eEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeE
Q 002511 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTI 295 (914)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i 295 (914)
.+.+||..+++.+...... .+..++..+++ +++ .+..|.+
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~-ssG~G~~ 279 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLV-SSGQGQL 279 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCc-eEE-eCCCccE
Confidence 8999999999988776544 45667776666 444 4444443
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.9e-07 Score=94.61 Aligned_cols=249 Identities=13% Similarity=0.159 Sum_probs=176.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC---CceeEEeeecCCCeEEEEEecCCCEEEEEEC-CCEEEEEECCCC
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQS---QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTM 89 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~t~ 89 (914)
|.+.|+.+.-.. -+++.+++.||.++.|.-.. -+.++.+..|-+.|.+++.+-+|..+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 777777776554 56899999999999998432 1445566778889999999999999999887 999999999876
Q ss_pred eeeEEEecCCCCEEEEEEeC-CC---CEEEEE-EcCCeEEEEECCCCc-eEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 90 DKVKVFEAHTDYIRCVAVHP-TL---PYVLSS-SDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 90 ~~~~~~~~~~~~i~~~~~s~-~~---~~l~~~-~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
..+..++-. .....+.|.. .| ..|+++ -.+|.+.++|-.... +......-|..+|.++.++| .+..+++...
T Consensus 87 DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDI 164 (558)
T ss_pred chhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccc
Confidence 554333211 1111223322 22 134333 456899999987653 33444556899999999999 8889999999
Q ss_pred CCcEEEEECCC------CCCcE---------EEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec--
Q 002511 164 DRTIKIWNLGS------PDPNF---------TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-- 226 (914)
Q Consensus 164 dg~i~vwd~~~------~~~~~---------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-- 226 (914)
.|.|.-|.... .+... .+...+....++.++|++. .+.+-+.|..|+++++.+|+.++.+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~--qistl~~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA--QISTLNPDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC--cccccCcccEEEEEEeccchhhhhhhcc
Confidence 99999998763 11111 1122345568999999998 58888899999999999887654332
Q ss_pred ------------------------------Ccc-cceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEee
Q 002511 227 ------------------------------GHT-HNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLN 268 (914)
Q Consensus 227 ------------------------------~~~-~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (914)
.|. ..-+.++|...|++|+-|+-= -|++.++.+++..+.+.
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 111 123567788888888888765 48888888888777664
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=3.5e-07 Score=100.71 Aligned_cols=182 Identities=12% Similarity=0.132 Sum_probs=140.4
Q ss_pred CCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEE
Q 002511 68 RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQ 147 (914)
Q Consensus 68 ~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~ 147 (914)
++..++.|+-...+..+|+++.+..+...-..+.|.-+.. +++++.+|...|+|.+-|.++. +..+.+..|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-ceeeeeeccccceee
Confidence 3456777777778889999988877776655555665554 5788999999999999999987 788899999999988
Q ss_pred EEEccCCCCEEEEEeC---------CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC-
Q 002511 148 VTFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ- 217 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~- 217 (914)
+.. .+++|++|+. |.-|+|||++.-+.+..+.-+.++ .-+.|.|.-.. .+++++..|...+.|..
T Consensus 223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEecccceeeccccc
Confidence 776 4788888876 455899999987766555544443 56778777554 68888999999999943
Q ss_pred --CC-ceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEe
Q 002511 218 --TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (914)
Q Consensus 218 --~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd 257 (914)
+. ..+..+......+..++++++|..++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22 12333444455599999999999999999999999997
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=0.00014 Score=69.08 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeE
Q 002511 111 LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNC 190 (914)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 190 (914)
..+++.|+..+.+.-.|..++...-...-+ .+|.+-+.- -++.++.|+..|.+++.+.+++.....+.....--..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 356778888888888888887443333222 233333332 2678999999999999999999877766533221122
Q ss_pred EEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCce--eEEEee
Q 002511 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYR--LENTLN 268 (914)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~ 268 (914)
....+++. ++..|+.|+..+..|.++..++...+-..+...+-+..|....|..+...|.|.--..+++. ......
T Consensus 99 a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 99 AQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred eEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 33344554 89999999999999999999988877555555566667733344444555665555544442 221111
Q ss_pred cCCccEEE--EEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEE
Q 002511 269 YGLERVWA--IGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWA 317 (914)
Q Consensus 269 ~~~~~v~~--i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~ 317 (914)
. .+++.+ ++. ++.+..++-||.+.- +++.|..+|.
T Consensus 177 ~-~~PiF~splcv---~~sv~i~~VdG~l~~----------f~~sG~qvwr 213 (354)
T KOG4649|consen 177 R-FGPIFASPLCV---GSSVIITTVDGVLTS----------FDESGRQVWR 213 (354)
T ss_pred c-CCccccCceec---cceEEEEEeccEEEE----------EcCCCcEEEe
Confidence 1 122221 111 345666777777665 4555555554
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.65 E-value=1.9e-05 Score=85.13 Aligned_cols=263 Identities=13% Similarity=0.165 Sum_probs=152.6
Q ss_pred cCCCCEEEEEe---------cCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 24 HPSEPWILASL---------YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 24 sp~~~~la~~~---------~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
|||+++++... ..+.+.|||+.+++...... ....+....|||+|++++... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68999888742 24679999999986554333 366789999999999999885 57899999887754432
Q ss_pred Ee-c-------C---------CCCEEEEEEeCCCCEEEEEEcC-C-----------------------------------
Q 002511 95 FE-A-------H---------TDYIRCVAVHPTLPYVLSSSDD-M----------------------------------- 121 (914)
Q Consensus 95 ~~-~-------~---------~~~i~~~~~s~~~~~l~~~~~d-g----------------------------------- 121 (914)
-. + - -+.-..+-|||||++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22 1 0 1123568899999998865322 1
Q ss_pred eEEEEECCCCceE-EEEe---ecCcccEEEEEEccCCCCEEEEEeC--CC---cEEEEECCCCCCcEEEec-CCC---Ce
Q 002511 122 LIKLWDWEKGWMC-TQIF---EGHSHYVMQVTFNPKDTNTFASASL--DR---TIKIWNLGSPDPNFTLDA-HQK---GV 188 (914)
Q Consensus 122 ~i~iwd~~~~~~~-~~~~---~~~~~~i~~~~~~p~~~~~l~~~~~--dg---~i~vwd~~~~~~~~~~~~-~~~---~v 188 (914)
.+.++|+.++... .... ......+..+.|.+ ++..|+.... +. .+.++|..++........ ... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 2333455444221 1111 13356688899998 5663444333 22 366778777655433321 111 12
Q ss_pred eEEEEe-eCCCcCEEEEEEcCCe--EEEEECCCCceEEEecCcccceEE-EEEeCCCCEEEE-EECC----CeEEEEeCC
Q 002511 189 NCVDYF-TGGDKPYLITGSDDHT--AKVWDYQTKSCVQTLEGHTHNVSA-VCFHPELPIIIT-GSED----GTVRIWHAT 259 (914)
Q Consensus 189 ~~~~~~-~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~-~~~d----g~v~iwd~~ 259 (914)
....+. +++.. ++.....+|. |.+++...+. ...+....-.|.. +.++++++.|.. +..+ ..|..-++.
T Consensus 238 ~~~~~~~~~~~~-~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 238 DPPHFLGPDGNE-FLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp SEEEE-TTTSSE-EEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cccccccCCCCE-EEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 345554 55554 5666667765 5555665444 4455544555644 778888776654 4332 246666666
Q ss_pred CceeEEEeecCCccEEEEEEecCCCEEEEEec
Q 002511 260 TYRLENTLNYGLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 260 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
.+.....+....+....+.|||++++++..+.
T Consensus 316 ~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 316 SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 23344455544333379999999999887654
No 320
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=2.2e-05 Score=76.17 Aligned_cols=223 Identities=11% Similarity=0.123 Sum_probs=127.8
Q ss_pred EEEecCCCEEEEEECCCEEEEEECCCC--eeeEEE---ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002511 63 AKFVARKQWVVAGADDMFIRVYNYNTM--DKVKVF---EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (914)
Q Consensus 63 ~~~s~~~~~l~~g~~dg~i~vwd~~t~--~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (914)
++.+.+|+.||+.. |..|.|-..+.. ..+... +.....-+.++||||+..|+.+...|+|+++|+-+. .+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 56678898887764 456666654421 111222 222334688999999999999999999999999864 33332
Q ss_pred eecC------cccEEEEEEccCC-----CCEEEEEeCCCcEEEEECCCC-----CCcEE--Eec-CCCCeeEEEEeeCCC
Q 002511 138 FEGH------SHYVMQVTFNPKD-----TNTFASASLDRTIKIWNLGSP-----DPNFT--LDA-HQKGVNCVDYFTGGD 198 (914)
Q Consensus 138 ~~~~------~~~i~~~~~~p~~-----~~~l~~~~~dg~i~vwd~~~~-----~~~~~--~~~-~~~~v~~~~~~~~~~ 198 (914)
-..+ ...|..+.|.+.. ...|++-...|.++-|-+..+ +.... +.. ...+|+++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 2222 3456667665421 335666677888887765322 22223 222 467899999998876
Q ss_pred cCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEE--EEEECCC------eEEEEeCCCceeEEEeecC
Q 002511 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPII--ITGSEDG------TVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l--~~~~~dg------~v~iwd~~~~~~~~~~~~~ 270 (914)
+|++|+.... +++. -+.....+++-..-.+.++. ++...|+ +..+|.+-+.+........
T Consensus 161 --LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~ 228 (282)
T PF15492_consen 161 --LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE 228 (282)
T ss_pred --EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence 6666654321 0000 00111112222221111111 1111111 1233443333332222334
Q ss_pred CccEEEEEEecCCCEEEEEecCCeEEEEc
Q 002511 271 LERVWAIGYMKSSRRIVIGYDEGTIMVKI 299 (914)
Q Consensus 271 ~~~v~~i~~~~~~~~l~~~~~dg~i~i~~ 299 (914)
...|..++.||||+.||+...+|.+.+|.
T Consensus 229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 229 QDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred CCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 57899999999999999999999999983
No 321
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.64 E-value=2.6e-05 Score=79.44 Aligned_cols=211 Identities=11% Similarity=0.004 Sum_probs=134.0
Q ss_pred CCCEEEEEECCCCeeeEEEecC--CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCC
Q 002511 77 DDMFIRVYNYNTMDKVKVFEAH--TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 77 ~dg~i~vwd~~t~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (914)
++|.|..||..+|+.+...... .....+. ..+++.++++++.++.|..||..++...-+.-........ ... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~---~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVV---D 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEE---E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eee---c
Confidence 3689999999999999888641 1222222 2335668888899999999999888433332221111111 111 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEEE-ecCC---CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCccc
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFTL-DAHQ---KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH 230 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 230 (914)
++.+++++.++.|..+|..+++..... .... ...........++ .++++..++.|..+|.++|+.+........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD--RLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT--EEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC--EEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 567777778899999999999988874 3221 1112222333344 688888899999999999999887765432
Q ss_pred c----------eEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 231 N----------VSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 231 ~----------v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
. +..-....++ .++.++.+|.+..+|..+++.+.... ...+.. .....+..+++++.++.+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEE
Confidence 2 1222233344 67777777754444999999765433 222222 145677888888888888874
No 322
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.61 E-value=9.2e-07 Score=97.57 Aligned_cols=182 Identities=14% Similarity=0.218 Sum_probs=140.2
Q ss_pred CCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEE
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCV 105 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~ 105 (914)
++..++.|+....+..+|+.+.+..+......+.|.-++ .+++.+.+|...|+|.+-|.++.+.++++.+|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 344577777777888899998888777766665555544 477899999999999999999999999999999999876
Q ss_pred EEeCCCCEEEEEEc---------CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE---CC
Q 002511 106 AVHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN---LG 173 (914)
Q Consensus 106 ~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd---~~ 173 (914)
.. .|+.|++|+. |..|++||++.-+.+. .+.-+.++ .-+.|.|.-...+++++..|...+-| +.
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-CcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 66 4788998875 5568999999763322 22223332 45678887788999999999999999 44
Q ss_pred CCC-CcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 174 SPD-PNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 174 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
+.. .+..+......+..++++++++ .++.|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~--alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGD--ALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCc--eEEEecccCcEeeec
Confidence 432 2333444556689999999888 799999999999997
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=6.8e-06 Score=90.61 Aligned_cols=204 Identities=13% Similarity=0.239 Sum_probs=139.2
Q ss_pred EEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCC-eEEEEEecCCCEEEEEECCC-----EEEEEECCCC-----
Q 002511 21 VDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELP-VRSAKFVARKQWVVAGADDM-----FIRVYNYNTM----- 89 (914)
Q Consensus 21 ~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~g~~dg-----~i~vwd~~t~----- 89 (914)
-+|++.+..++.|+.+|.|.+.+ ++.+.++.|..+... |..+....+..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 34688888999999999999998 566666888888777 44444444446777766654 5999998632
Q ss_pred -eee---EEEe----cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC---CCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 90 -DKV---KVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE---KGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 90 -~~~---~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
.++ +.+. ....++.+++.|.+-+.+++|-.+|.|..+.-+ ..............+|+.+.+.. ++..+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCcee
Confidence 222 1121 135678999999999999999999999998532 11122233334567899999987 55552
Q ss_pred EEEeCCCcEEEEECCCCCCc-EEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-Ccc
Q 002511 159 ASASLDRTIKIWNLGSPDPN-FTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHT 229 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 229 (914)
+.......|.+|.+.+..+. ..+..+..+++|..+++... -+++++ +..+.+|+.....+...+. +|.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~--qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY--QFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc--cEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 33334468999999755533 34677888899998887654 255554 4469999987655555555 443
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.7e-07 Score=91.89 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=117.3
Q ss_pred EEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCC----CcEEEecCCCCeeE
Q 002511 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPD----PNFTLDAHQKGVNC 190 (914)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~ 190 (914)
++.+.+..|-+-|+.++ ..+.+. ..+.|.++.|.. .+++++.|+.+|.|..+|++... .....--|...|++
T Consensus 228 fs~G~sqqv~L~nvetg--~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--HQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecc--cccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 45566678889999987 334444 566788899987 78999999999999999998652 22222348888999
Q ss_pred EEEeeCCCcCEEEEEEcCCeEEEEECCCCce---EEEecCcccceEE--EEEeCCCCEEEEEECCCeEEEEeCCCceeEE
Q 002511 191 VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC---VQTLEGHTHNVSA--VCFHPELPIIITGSEDGTVRIWHATTYRLEN 265 (914)
Q Consensus 191 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~--i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 265 (914)
+..-...+ ++|++.+.+|+|++||++--++ +.+..+|...-.- +-..+....+++++.|...|||.++.|.++.
T Consensus 304 lq~Lq~s~-q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQ-QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhcccc-ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 88766333 2899999999999999997666 8888888654333 3345666789999999999999999999998
Q ss_pred EeecCC
Q 002511 266 TLNYGL 271 (914)
Q Consensus 266 ~~~~~~ 271 (914)
++....
T Consensus 383 tipf~~ 388 (425)
T KOG2695|consen 383 TIPFPY 388 (425)
T ss_pred ccCCCC
Confidence 887653
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=91.21 Aligned_cols=161 Identities=11% Similarity=0.120 Sum_probs=118.2
Q ss_pred EEecC--CCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC----ceEEEE
Q 002511 64 KFVAR--KQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG----WMCTQI 137 (914)
Q Consensus 64 ~~s~~--~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~ 137 (914)
+|+-+ |-. ++.+.+..|-+-|+.||-. +.|. ..+.|.++.|...++.+..|+.+|.|..+|++.+ ..+.+.
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56532 334 3344556788889888643 3343 4567899999999999999999999999999854 122222
Q ss_pred eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC---cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEE
Q 002511 138 FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (914)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (914)
--|.+.|+++..-..++..|.+.+.+|+|++||++.-+. +.+..+|...-.-+-+.-+.....++++++|...+||
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 237788998876654678899999999999999987666 6777777554444444434444489999999999999
Q ss_pred ECCCCceEEEecCc
Q 002511 215 DYQTKSCVQTLEGH 228 (914)
Q Consensus 215 d~~~~~~~~~~~~~ 228 (914)
.++.+..+.++...
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999998887643
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2e-06 Score=93.99 Aligned_cols=182 Identities=13% Similarity=0.181 Sum_probs=130.5
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
.+.++|+++| ++.|+.|..+|.|++++.. +.. ++...|... ..+|.++++|+.||.|.|..+-+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3567788887 6789999999999999964 433 333334433 66899999999999999999988888777
Q ss_pred EecCCCCEEEEEEeCC-----CCEEEEEEcCCeEEEEECC--CCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 95 FEAHTDYIRCVAVHPT-----LPYVLSSSDDMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
+.- ..++.+++++|+ .+.+++|+..| +.++.-+ +. .....+....++|.++.|. +++++-++.+ .|
T Consensus 109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v~l~~~eG~I~~i~W~---g~lIAWand~-Gv 181 (846)
T KOG2066|consen 109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSVVLSEGEGPIHSIKWR---GNLIAWANDD-GV 181 (846)
T ss_pred Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccceeeecCccceEEEEec---CcEEEEecCC-Cc
Confidence 764 457999999998 45788999888 7777532 22 1222455567899999996 6788777655 48
Q ss_pred EEEECCCCCCcEEEecCCCC------eeEEEEeeCCCcCEEEEEEcCCeEEEEECC
Q 002511 168 KIWNLGSPDPNFTLDAHQKG------VNCVDYFTGGDKPYLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 168 ~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 217 (914)
++||+...+.+..+...... ...+.|.+.. .++.|= ..+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~---~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED---RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC---eEEEec-CCeEEEEEEe
Confidence 99999887766555433322 2356776654 355554 4478888776
No 327
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00047 Score=75.54 Aligned_cols=82 Identities=15% Similarity=-0.006 Sum_probs=62.4
Q ss_pred cCCcchhHHHHHhcCCHHH--HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHH
Q 002511 694 AMDLSGLLLLYSSLGDAEG--ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIV 771 (914)
Q Consensus 694 ~~d~~~l~~l~~~~g~~~~--~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~ 771 (914)
-.-|..++.+|+-.|.... +---|.-....++++.|..+|...|++.+|...|..+++|.++.-++..-.++.+...-
T Consensus 904 hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e~~~~A 983 (1243)
T COG5290 904 HDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYEFNLCA 983 (1243)
T ss_pred ccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchHHHHHH
Confidence 3456778888887766443 23346666778899999999999999999999999999999999777776676655443
Q ss_pred HHHH
Q 002511 772 AIWR 775 (914)
Q Consensus 772 ~~~~ 775 (914)
+...
T Consensus 984 E~L~ 987 (1243)
T COG5290 984 ELLP 987 (1243)
T ss_pred Hhhh
Confidence 3333
No 328
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.47 E-value=0.00014 Score=82.01 Aligned_cols=262 Identities=12% Similarity=0.132 Sum_probs=155.5
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCC------CeE--EEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecC
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL------PVR--SAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~ 98 (914)
+..+.+++.++.|.-.|..+|+.+..+..... .+. .+.. .++..++.++.+|.|+-+|.+||+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34567777789999999999988877654322 110 0111 12267888889999999999999999887643
Q ss_pred CCC-----E-EEEEEeCCCCEEEEEE---------cCCeEEEEECCCCceEEEEeecCcc-------------------c
Q 002511 99 TDY-----I-RCVAVHPTLPYVLSSS---------DDMLIKLWDWEKGWMCTQIFEGHSH-------------------Y 144 (914)
Q Consensus 99 ~~~-----i-~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-------------------~ 144 (914)
... + .+..+. +..++.++ .+|.|..+|..+++..-+....... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 1 112222 23455554 3678999999988443322111110 0
Q ss_pred E-EEEEEccCCCCEEEEEeCCC------------------cEEEEECCCCCCcEEEecCCCCe------eEEEEee----
Q 002511 145 V-MQVTFNPKDTNTFASASLDR------------------TIKIWNLGSPDPNFTLDAHQKGV------NCVDYFT---- 195 (914)
Q Consensus 145 i-~~~~~~p~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~v------~~~~~~~---- 195 (914)
+ .+.++.+ .+..++.++.++ .|.-+|..+++............ ....+..
T Consensus 218 vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 218 SWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred ccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 1 1233444 456777777665 79999999999887764321111 1111111
Q ss_pred CCC-cCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEE------------------ECCCeEEEE
Q 002511 196 GGD-KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG------------------SEDGTVRIW 256 (914)
Q Consensus 196 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~------------------~~dg~v~iw 256 (914)
++. ..++++++.+|.+..+|..+|+.+...... ...++.+| ..+..+ ..+|.|.-.
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 121 125778888999999999999998776422 11233444 223332 236789999
Q ss_pred eCCCceeEEEeecCCc--------cEEEEEEecCCCEEEEEecCCeEEE
Q 002511 257 HATTYRLENTLNYGLE--------RVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 257 d~~~~~~~~~~~~~~~--------~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
|+.+|+.+........ +...-.....+..|++++.+|.++.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 9999998877665411 1111111124566777777777665
No 329
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.46 E-value=0.00096 Score=69.42 Aligned_cols=245 Identities=10% Similarity=0.079 Sum_probs=119.8
Q ss_pred eCCCCceeEEeeecCCCeE-----EEEEecCCCEEEEEEC---CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEE
Q 002511 43 NYQSQTMAKSFEVTELPVR-----SAKFVARKQWVVAGAD---DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYV 114 (914)
Q Consensus 43 d~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~g~~---dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l 114 (914)
|..||..+..+........ .=+|.++|+.|+.+++ ...+.+.|+.+++..+.-.+.........++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 6677877777765443222 2367889988877766 4578888999987766555332323356778888888
Q ss_pred EEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEcc-CCCCEEEEEeC----------------------CCcEEEEE
Q 002511 115 LSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP-KDTNTFASASL----------------------DRTIKIWN 171 (914)
Q Consensus 115 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~~l~~~~~----------------------dg~i~vwd 171 (914)
+-......|.-.|+++. ....++......+-...|.. .++..++-.-. ...|...|
T Consensus 96 ~Yv~~~~~l~~vdL~T~-e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTL-EERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EEEETTTEEEEEETTT---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EEEECCCeEEEEECCcC-cEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76666678999999997 55566666666665566653 24444432211 12355667
Q ss_pred CCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc---CC-eEEEEECCC-CceEEEecCccc--ceEEEEEeCCCCEE
Q 002511 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD---DH-TAKVWDYQT-KSCVQTLEGHTH--NVSAVCFHPELPII 244 (914)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~--~v~~i~~~~~~~~l 244 (914)
+.+++....+. ...-+.-+.++|.... +|.-|-. +. .-+||-+++ +...+.+..+.. .+.-=-|.|+|..|
T Consensus 175 l~tG~~~~v~~-~~~wlgH~~fsP~dp~-li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 175 LKTGERKVVFE-DTDWLGHVQFSPTDPT-LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp TTT--EEEEEE-ESS-EEEEEEETTEEE-EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred CCCCceeEEEe-cCccccCcccCCCCCC-EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 77766544443 3455677888887653 3444332 11 124554432 444444433322 23444589999876
Q ss_pred EEEE-----CCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecC
Q 002511 245 ITGS-----EDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 245 ~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (914)
.--+ .+..|.-+|..+++....... .....+..++||++++--+.|
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 6533 234577788888765443222 234556677888877654443
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.6e-05 Score=80.12 Aligned_cols=251 Identities=10% Similarity=0.096 Sum_probs=146.5
Q ss_pred cchhhhhcccCCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCC-CEEEEEECCCEE
Q 002511 4 RLEIKRKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK-QWVVAGADDMFI 81 (914)
Q Consensus 4 ~~~~~~~l~~h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i 81 (914)
.++....+.+|...|..++|||... ++..++.+..|.|.|+++...+..+..+ .++.+++|.-|. .+|..|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3444556778899999999999877 6778888999999999999999888877 789999998865 567777889999
Q ss_pred EEEECCCCee-eEEEec--CCCCEEEEEE------eCCCCEEEEEEcCCeEEEEECCCCce-EEEEe-ecCcccEEEEEE
Q 002511 82 RVYNYNTMDK-VKVFEA--HTDYIRCVAV------HPTLPYVLSSSDDMLIKLWDWEKGWM-CTQIF-EGHSHYVMQVTF 150 (914)
Q Consensus 82 ~vwd~~t~~~-~~~~~~--~~~~i~~~~~------s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~i~~~~~ 150 (914)
.|||++..+- +..+.+ ...+|..++. .+.|.+++..+.+ +..|.+..... ...+. .+..+...++.+
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy 338 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQY 338 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeee
Confidence 9999975432 111111 1223433332 3344444444443 56676543211 11111 123455666667
Q ss_pred ccCCCCEEEEEeCCC------cEEE-EECCCCCCcEEEe-cCCCC----e--eEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 151 NPKDTNTFASASLDR------TIKI-WNLGSPDPNFTLD-AHQKG----V--NCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 151 ~p~~~~~l~~~~~dg------~i~v-wd~~~~~~~~~~~-~~~~~----v--~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
.+..+..+++.-.+. .|.. -|-..|.++...+ .+.+. + ....+.+..+..++.++.+.+.+.+||.
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~ 418 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP 418 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence 663333344332211 1111 1222333332221 11000 0 0111222222223344555688999999
Q ss_pred CCCceEEEecCcccceEEEEEeC-CC-CEEEEEECCCeEEEEeCC
Q 002511 217 QTKSCVQTLEGHTHNVSAVCFHP-EL-PIIITGSEDGTVRIWHAT 259 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~~i~~~~-~~-~~l~~~~~dg~v~iwd~~ 259 (914)
.+.+.++++. ...+|..++... ++ .+|++-. |..++||..+
T Consensus 419 ~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 419 HSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred chhheeeecc-cCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999999887 447788877654 33 3555554 5588888644
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.42 E-value=0.00051 Score=70.01 Aligned_cols=245 Identities=14% Similarity=0.142 Sum_probs=151.8
Q ss_pred EEEEEcCCCCEEEEEec----------CCcEEEEeCCCCceeEEeeecCC-------CeEEEEEecCCCEEEEEEC--CC
Q 002511 19 KSVDLHPSEPWILASLY----------SGTVCIWNYQSQTMAKSFEVTEL-------PVRSAKFVARKQWVVAGAD--DM 79 (914)
Q Consensus 19 ~~~~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~g~~--dg 79 (914)
-.+..||+++.++++.. .-.|.+||..+-.....+..... ....++++.|++++++..- -.
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 34678999998887532 33599999999887776665433 2344688899999887643 56
Q ss_pred EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE----eecCcccEE-EEEEccCC
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI----FEGHSHYVM-QVTFNPKD 154 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~-~~~~~p~~ 154 (914)
.|.|.|+..++.+..+..... ..+-=++ ...+.+-|.||.+.-..++...+..+. +.....++. .-.+.. .
T Consensus 119 SVtVVDl~~~kvv~ei~~PGC--~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~ 194 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTPGC--WLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-D 194 (342)
T ss_dssp EEEEEETTTTEEEEEEEGTSE--EEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-T
T ss_pred eEEEEECCCCceeeeecCCCE--EEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-C
Confidence 899999999998888874331 1121112 245778889999999888843233222 212222222 333444 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEE--Eec----------CCCCeeEEEEeeCCCcCEEEEEEc---C-------CeEE
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFT--LDA----------HQKGVNCVDYFTGGDKPYLITGSD---D-------HTAK 212 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~----------~~~~v~~~~~~~~~~~~~l~~~~~---d-------g~i~ 212 (914)
+..++..+.+|.|+-.|+........ +.. ..++-.-+++++..+. |.+.-. + ..|.
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r--lyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR--LYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE--EEEEEEE--TT-TTS-EEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe--EEEEecCCCCCCccCCceEEE
Confidence 55666678899999999876653221 110 1223345666665553 322211 1 1388
Q ss_pred EEECCCCceEEEecCcccceEEEEEeCCCC-EEEEEE-CCCeEEEEeCCCceeEEEeecC
Q 002511 213 VWDYQTKSCVQTLEGHTHNVSAVCFHPELP-IIITGS-EDGTVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~~~~~~~ 270 (914)
++|+.+++.+..+.. ..++.+|..+.+.+ +|++.+ .++.|.+||..+|+.+.++..-
T Consensus 273 v~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 889999999988873 35677999998765 665544 5789999999999998877643
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.00023 Score=80.18 Aligned_cols=234 Identities=15% Similarity=0.111 Sum_probs=144.7
Q ss_pred CEEEEEecCCcEEEEeCCCCceeEEeeecCCC-----eE-EEEEecCCCEEEEEE---------CCCEEEEEECCCCeee
Q 002511 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTELP-----VR-SAKFVARKQWVVAGA---------DDMFIRVYNYNTMDKV 92 (914)
Q Consensus 28 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~s~~~~~l~~g~---------~dg~i~vwd~~t~~~~ 92 (914)
..+++++.+|.|.-+|.++|+.+..+...... +. ...+. +..+++++ .+|.+..+|..||+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56778888999999999999988777643221 11 11222 24555554 3678999999999998
Q ss_pred EEEecCCCC--------------------E-EEEEEeCCCCEEEEEEcCC------------------eEEEEECCCCce
Q 002511 93 KVFEAHTDY--------------------I-RCVAVHPTLPYVLSSSDDM------------------LIKLWDWEKGWM 133 (914)
Q Consensus 93 ~~~~~~~~~--------------------i-~~~~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~ 133 (914)
..+...... + ...++.+.+..++.++.++ .|.-+|..++..
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 877542110 1 1234445566788887665 789999998844
Q ss_pred EEEEeec-Cccc---E-EEEEEc---cCCCC---EEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEE
Q 002511 134 CTQIFEG-HSHY---V-MQVTFN---PKDTN---TFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYL 202 (914)
Q Consensus 134 ~~~~~~~-~~~~---i-~~~~~~---p~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 202 (914)
.-+.-.. |... . ....+. ..++. .+++++.+|.+...|..+++.+........ .+...| + .+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~--~--~v 341 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDP--G--LV 341 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc---ccccCC--c--eE
Confidence 3332111 2110 0 000111 11232 678888899999999999998876542211 122222 1 23
Q ss_pred EEE------------------EcCCeEEEEECCCCceEEEecCcc--------cceEEEEEeCCCCEEEEEECCCeEEEE
Q 002511 203 ITG------------------SDDHTAKVWDYQTKSCVQTLEGHT--------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (914)
Q Consensus 203 ~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~l~~~~~dg~v~iw 256 (914)
+.+ ..+|.+.-.|..+|+.+....... .+...-...-.+..|++++.||.|+.+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 222 246789999999999887765331 111111111245678888999999999
Q ss_pred eCCCceeEEEeecC
Q 002511 257 HATTYRLENTLNYG 270 (914)
Q Consensus 257 d~~~~~~~~~~~~~ 270 (914)
|..+|+.+...+..
T Consensus 422 d~~tG~~lW~~~~~ 435 (488)
T cd00216 422 DATTGKELWKFRTP 435 (488)
T ss_pred ECCCCceeeEEECC
Confidence 99999999887764
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=2.6e-05 Score=85.61 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=113.4
Q ss_pred cccCCCCEEEEEEcCC-------------CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC-----CCEE
Q 002511 11 LAQRSERVKSVDLHPS-------------EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR-----KQWV 72 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~-------------~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l 72 (914)
|..|.+.|.-..+.-+ |.++++|+.||+|.|..+-+.+...++. ...++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence 4567777776666555 9999999999999999998888777666 5578999999998 5679
Q ss_pred EEEECCCEEEEEECC--CCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCc-----ccE
Q 002511 73 VAGADDMFIRVYNYN--TMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS-----HYV 145 (914)
Q Consensus 73 ~~g~~dg~i~vwd~~--t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~i 145 (914)
++|+..| +.++.-+ ..+....+....++|.++.|. |++++-++++| |++||..++..+..+-..+. ...
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fp 208 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFP 208 (846)
T ss_pred eecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCC
Confidence 9999988 7777532 111122455667899999997 67888888777 89999998855554443332 223
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECC
Q 002511 146 MQVTFNPKDTNTFASASLDRTIKIWNLG 173 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 173 (914)
..+.|.+ .+.++.|- ..+|++..++
T Consensus 209 phl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred CceEecC--CCeEEEec-CCeEEEEEEe
Confidence 5677875 56666664 4578888876
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.6e-05 Score=77.56 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=148.6
Q ss_pred EEEEeCCCCceeEEeeecCCCeEEEEEecCCC-EEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCC-CEEEE
Q 002511 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQ-WVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL-PYVLS 116 (914)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~-~~l~~ 116 (914)
|++.+..+.+....+..+...|+.++|||... ++..++.+..|.|.|+.+...+..+..+ ..+.+++|.-+. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 45555444444555566778899999999877 6788889999999999999888888887 689999998865 56778
Q ss_pred EEcCCeEEEEECCCCceEEEEeec--CcccEEEEEEccC-----CCCEEEEEeCCCcEEEEECCC--CCCcEEEe-cCCC
Q 002511 117 SSDDMLIKLWDWEKGWMCTQIFEG--HSHYVMQVTFNPK-----DTNTFASASLDRTIKIWNLGS--PDPNFTLD-AHQK 186 (914)
Q Consensus 117 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~p~-----~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~-~~~~ 186 (914)
|..+|.|.+||++........+.+ ...+|..++.-+. .+.+++..+. .+..|.+.. +.....+. ...+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCc
Confidence 888999999999976444433332 2344554443320 2334444333 244565432 22222222 2244
Q ss_pred CeeEEEEeeCCCcCEEEEEEcCCe------EE-EEECCCCceEEEec-Cc-cc---ce---EEEEEeCCCCEEE-EEECC
Q 002511 187 GVNCVDYFTGGDKPYLITGSDDHT------AK-VWDYQTKSCVQTLE-GH-TH---NV---SAVCFHPELPIII-TGSED 250 (914)
Q Consensus 187 ~v~~~~~~~~~~~~~l~~~~~dg~------i~-iwd~~~~~~~~~~~-~~-~~---~v---~~i~~~~~~~~l~-~~~~d 250 (914)
...++++.+..+. .+++.-.+.. +- --|..+|.++...+ ++ .+ ++ ..+.-.++.++|+ +|...
T Consensus 332 ~cismqy~~~snh-~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 332 ICISMQYHGVSNH-LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred ceeeeeecCccce-EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 5555666554442 3333332210 11 12333444433222 11 00 11 1122234445544 44556
Q ss_pred CeEEEEeCCCceeEEEeecCCccEEEEEEecC--CCEEEEEecCCeEEE
Q 002511 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKS--SRRIVIGYDEGTIMV 297 (914)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~dg~i~i 297 (914)
..+.+||..+++.++++... .+|..++...- +.+|++-++ ..+.|
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd-~~v~I 457 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTD-DRVHI 457 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheec-ceEEE
Confidence 78999999999999998876 77777775532 345555443 34444
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.5e-06 Score=59.22 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=36.6
Q ss_pred CceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
++++.++.+|..+|.+++|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357789999999999999999999999999999999997
No 336
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.7e-06 Score=58.95 Aligned_cols=39 Identities=31% Similarity=0.531 Sum_probs=36.8
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
++++.++.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.31 E-value=0.0016 Score=67.73 Aligned_cols=266 Identities=11% Similarity=0.104 Sum_probs=134.6
Q ss_pred EEcCCCCEEEEEec---CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecC
Q 002511 22 DLHPSEPWILASLY---SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH 98 (914)
Q Consensus 22 ~~sp~~~~la~~~~---~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~ 98 (914)
+|.+||+.|+.++. ...+.+.|+.+++..+--.+.........++|+++.++-......|+-.|+.|++....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 57789987777665 445788899998776544432222335677899998877767778999999998887777777
Q ss_pred CCCEEEEEEe--CCCCEEEEEE----------------------cCCeEEEEECCCCceEEEEeecCcccEEEEEEccCC
Q 002511 99 TDYIRCVAVH--PTLPYVLSSS----------------------DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 99 ~~~i~~~~~s--~~~~~l~~~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~ 154 (914)
.+.+-...|. .++..++-.- ....|.-.|+.++ ....++. ....+..+.|+|.+
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEE-ESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEe-cCccccCcccCCCC
Confidence 7777667774 4555544321 1234566677776 4444443 44567889999988
Q ss_pred CCEEEEEeCC---C-cEEEEECCC-CCCcEEEecCC--CCeeEEEEeeCCCcCEEEEEEc---CCeEEEEECCCCceEEE
Q 002511 155 TNTFASASLD---R-TIKIWNLGS-PDPNFTLDAHQ--KGVNCVDYFTGGDKPYLITGSD---DHTAKVWDYQTKSCVQT 224 (914)
Q Consensus 155 ~~~l~~~~~d---g-~i~vwd~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 224 (914)
+.+++.|-+. . .-+||-++. +.....+..+. ..+.-=-|.|+|...+...... +..|.-+|..++.....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 8888887652 2 125564433 22233332222 2223344778877522222222 33566778887765432
Q ss_pred ecCcccceEEEEEeCCCCEEEEEECCC----------------eEEEEeCCCceeEEEeec---------CC-ccEEEEE
Q 002511 225 LEGHTHNVSAVCFHPELPIIITGSEDG----------------TVRIWHATTYRLENTLNY---------GL-ERVWAIG 278 (914)
Q Consensus 225 ~~~~~~~v~~i~~~~~~~~l~~~~~dg----------------~v~iwd~~~~~~~~~~~~---------~~-~~v~~i~ 278 (914)
.. ......+..+++|++++-=+.|. -|+++++..++....... +. ..-....
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 22 22345666788998776433332 466677776654321110 00 0124578
Q ss_pred EecCCCEEEEEec
Q 002511 279 YMKSSRRIVIGYD 291 (914)
Q Consensus 279 ~~~~~~~l~~~~~ 291 (914)
|+|||+.++..++
T Consensus 358 FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 358 FSPDGKWVLFRSD 370 (386)
T ss_dssp E-TTSSEEEEEE-
T ss_pred cCCCCCEEEEECC
Confidence 9999988776554
No 338
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.2e-05 Score=81.90 Aligned_cols=208 Identities=17% Similarity=0.128 Sum_probs=143.5
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCC---CeeeEEEecCCCCEEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNT---MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSD-DMLIKLWDWEKG 131 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~ 131 (914)
|...|+.+.- .-.+++.+++-||.++.|--.. -+.+..+..|...|.+++.+.++-.+.+++. |..++++|+.+-
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 5555555443 3456899999999999997542 1334556788999999999999988888777 999999998865
Q ss_pred ceEEEE-eecCcccEEEEEEccCCC-CEEE-EEeCCCcEEEEECCCCC--CcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 132 WMCTQI-FEGHSHYVMQVTFNPKDT-NTFA-SASLDRTIKIWNLGSPD--PNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 132 ~~~~~~-~~~~~~~i~~~~~~p~~~-~~l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
...... +..-.+.+ ++..+|.+. ..++ +.-.++.+.++|-.... ....-.-|..+|.++.+.+.++ .+++..
T Consensus 87 DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--s~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--SAVSID 163 (558)
T ss_pred chhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--ceeecc
Confidence 222111 11112212 222233111 1333 33457889999976543 2333456889999999999998 588888
Q ss_pred cCCeEEEEECCC------CceEE---------EecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEe
Q 002511 207 DDHTAKVWDYQT------KSCVQ---------TLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTL 267 (914)
Q Consensus 207 ~dg~i~iwd~~~------~~~~~---------~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 267 (914)
..|.|.-|.... ..... .+.......+++.|+|+|..+.+-+.|..|++++..+|++.+.+
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 899999998762 11111 11223445789999999999999999999999999998876544
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.29 E-value=0.00071 Score=73.03 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=122.9
Q ss_pred ecCCCEEEEEE---------CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEE
Q 002511 66 VARKQWVVAGA---------DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQ 136 (914)
Q Consensus 66 s~~~~~l~~g~---------~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 136 (914)
|||+++++... ..+.+.+||+.+++....... ...+....|||+|+.++... ++.|.+++..++....-
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877742 246899999999765544333 56788999999999998876 47899999887733222
Q ss_pred EeecC----------------cccEEEEEEccCCCCEEEEEeCC-Cc---------------------------------
Q 002511 137 IFEGH----------------SHYVMQVTFNPKDTNTFASASLD-RT--------------------------------- 166 (914)
Q Consensus 137 ~~~~~----------------~~~i~~~~~~p~~~~~l~~~~~d-g~--------------------------------- 166 (914)
+..+. -..-..+.|+| |++.|+....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred ccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 22220 11235678999 77777765432 11
Q ss_pred --EEEEECCCCCCcE-EE----ecCCCCeeEEEEeeCCCcCEEEEEEcC---CeEEEEECCCCceEEEecC-cccce---
Q 002511 167 --IKIWNLGSPDPNF-TL----DAHQKGVNCVDYFTGGDKPYLITGSDD---HTAKVWDYQTKSCVQTLEG-HTHNV--- 232 (914)
Q Consensus 167 --i~vwd~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~-~~~~v--- 232 (914)
+.++|+.+++... .. ......+..+.|.+++..-++.....+ ..+.++|..++.+...... ....|
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3345554444321 11 123445778889888763233333333 2366678777655333321 12222
Q ss_pred EEEEEe-CCCC-EEEEEECCCe--EEEEeCCCceeEEEeecCCccEEE-EEEecCCCEEEEEe
Q 002511 233 SAVCFH-PELP-IIITGSEDGT--VRIWHATTYRLENTLNYGLERVWA-IGYMKSSRRIVIGY 290 (914)
Q Consensus 233 ~~i~~~-~~~~-~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~~~~ 290 (914)
....+. +++. ++.....+|. |.+++...+. ...+..+.-.|.. +.|+++++.|...+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEe
Confidence 245554 5555 4444456664 5555665554 3355555555644 66777776655433
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.00044 Score=74.38 Aligned_cols=266 Identities=10% Similarity=0.082 Sum_probs=135.9
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC--------
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT-------- 88 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t-------- 88 (914)
.|+.+.|.++..-|++|..+|.|.||.+...+... .....+-....+.+-+ ..++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58999999998889999999999999875543221 0000111111111100 0011111222211
Q ss_pred -CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE-eec------CcccEEEEEEcc----CCC-
Q 002511 89 -MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI-FEG------HSHYVMQVTFNP----KDT- 155 (914)
Q Consensus 89 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~------~~~~i~~~~~~p----~~~- 155 (914)
..+...+....++|++++.|.-| ++++|..+|.+.|.|++....+... +.. ....++++.|.. .|+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12334445568899999998655 9999999999999999887443331 112 234677888862 122
Q ss_pred --CEEEEEeCCCcEEEEECC-C--CCCcE----EEecCCCCeeEEEEee-CC------------------CcCEEEEEEc
Q 002511 156 --NTFASASLDRTIKIWNLG-S--PDPNF----TLDAHQKGVNCVDYFT-GG------------------DKPYLITGSD 207 (914)
Q Consensus 156 --~~l~~~~~dg~i~vwd~~-~--~~~~~----~~~~~~~~v~~~~~~~-~~------------------~~~~l~~~~~ 207 (914)
-.+++|+..|.+.+|.+- . +.... ....+..+|..+.... +. .-+-+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 468889999999999874 1 11111 1123455555555331 11 0112455555
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEe-----CCCCEEEEEECCCeEEEEeCCCceeEEEeecCC----ccEEEEE
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFH-----PELPIIITGSEDGTVRIWHATTYRLENTLNYGL----ERVWAIG 278 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-----~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~v~~i~ 278 (914)
+..++++...+.+..+......-....+++- ..+..|++-..+|.|+++.+...+.+..+..+. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 7789999988777665544222233344452 356678888899999999999988887776542 2233455
Q ss_pred EecCCCEEEEEec
Q 002511 279 YMKSSRRIVIGYD 291 (914)
Q Consensus 279 ~~~~~~~l~~~~~ 291 (914)
++++|..++..+.
T Consensus 314 is~~Gdi~~~~gp 326 (395)
T PF08596_consen 314 ISRNGDIFYWTGP 326 (395)
T ss_dssp E-TTS-EEEE-SS
T ss_pred ECCCCCEEEEeCc
Confidence 5666665544433
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.00049 Score=68.47 Aligned_cols=201 Identities=8% Similarity=0.114 Sum_probs=121.0
Q ss_pred hhcccCCCCEEEEEEcCCCC-EEEEEecCCcEEEEeCCCCceeEEeeec-CCCeEEEEEecCCCEEEEEECCCEEEEEEC
Q 002511 9 RKLAQRSERVKSVDLHPSEP-WILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNY 86 (914)
Q Consensus 9 ~~l~~h~~~v~~~~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~ 86 (914)
+.+.+-...+..+.|+|+.. ++++....+.|..++. +|+.++.+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45666667799999999866 5555666788888885 57888877654 356888999888876666555899999988
Q ss_pred CCCe------eeEEEe-----cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC---CceEEE-Ee------ecCcccE
Q 002511 87 NTMD------KVKVFE-----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK---GWMCTQ-IF------EGHSHYV 145 (914)
Q Consensus 87 ~t~~------~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~-~~------~~~~~~i 145 (914)
.... ....+. .++..+..++|.|.++.|+++-...-..+|.+.. ...... .. ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3221 112221 3456799999999988888888776677776654 111111 11 1123457
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCC---------CCeeEEEEeeCCCcCEEEEEEcCCeEEEE
Q 002511 146 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ---------KGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (914)
.+++++|..+++++.+..+..|..+| .+++++..+.-.. ...-.|++.++|+ |.+.+.-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-----EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC---EEEEcCCceEEEe
Confidence 89999998888899999999999999 5666665553222 3456889988775 6666666666554
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.19 E-value=4.5e-07 Score=96.22 Aligned_cols=199 Identities=19% Similarity=0.260 Sum_probs=136.9
Q ss_pred CCCEEEEEEcC--CCCEEEEEecCCcEEEEeCCCCce--eEEeeecCCCeEEEEEec-CCCEEEEEEC----CCEEEEEE
Q 002511 15 SERVKSVDLHP--SEPWILASLYSGTVCIWNYQSQTM--AKSFEVTELPVRSAKFVA-RKQWVVAGAD----DMFIRVYN 85 (914)
Q Consensus 15 ~~~v~~~~~sp--~~~~la~~~~~g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~g~~----dg~i~vwd 85 (914)
...+.|++++- +...+++|..+|.|-+-.+....- .....++..++++++|++ |.++||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45688888765 445788999999999988765422 233455778999999998 5677888743 66899999
Q ss_pred CCCC--eee--EEEec-CCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE
Q 002511 86 YNTM--DKV--KVFEA-HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 (914)
Q Consensus 86 ~~t~--~~~--~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~ 160 (914)
+.++ .+. ..+.+ ......+++|-.+.+.+++|.....+.++|++.. +.+.....+..+..+...|-.++++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs--~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS--LDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh--hhhhhhhhhhhcccceecCCCCCceec
Confidence 9876 221 12222 3345668999989999999999999999999853 222222233456677777866778877
Q ss_pred EeCCCcEEEEE-CCCCC-CcEEEe----cCCCCeeEEEEeeCCCcCEEEEEE-cCCeEEEEECC
Q 002511 161 ASLDRTIKIWN-LGSPD-PNFTLD----AHQKGVNCVDYFTGGDKPYLITGS-DDHTAKVWDYQ 217 (914)
Q Consensus 161 ~~~dg~i~vwd-~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 217 (914)
-. ||.|.+|| .++-+ ++.++. .....+..++|+|...+ ++++.. ..++|+++|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg-lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG-LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc-hhhhhccCcceEEEeccc
Confidence 66 99999999 33322 222222 12235889999998876 555554 45789998875
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00057 Score=75.38 Aligned_cols=217 Identities=12% Similarity=0.015 Sum_probs=134.8
Q ss_pred CCCEEEEEec-CCcEEEEeCCCCceeEEeeec-CCCeEEEE-------------------EecCCCEEEEEE-CCCEEEE
Q 002511 26 SEPWILASLY-SGTVCIWNYQSQTMAKSFEVT-ELPVRSAK-------------------FVARKQWVVAGA-DDMFIRV 83 (914)
Q Consensus 26 ~~~~la~~~~-~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~-------------------~s~~~~~l~~g~-~dg~i~v 83 (914)
||+||.+-.. ++.|-..++...+..+.+... ...+..++ ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6888888764 666777777665554444321 11222222 344555443222 2467788
Q ss_pred EECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC----CeEEEEECCCCceEEEEeecCcccEEEEEEcc-------
Q 002511 84 YNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD----MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNP------- 152 (914)
Q Consensus 84 wd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p------- 152 (914)
.|..+.+....+.-.. ....+.++|+|+++++.+.+ +++..-+.... . ..+.|++
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-----------d--~~vvfni~~iea~v 285 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-----------D--WVVVFNIARIEEAV 285 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC-----------c--eEEEEchHHHHHhh
Confidence 8888887777765433 45678999999999887642 22222222211 1 2222322
Q ss_pred CCCCEEEEEeCCCcEEEEECCC----CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-------
Q 002511 153 KDTNTFASASLDRTIKIWNLGS----PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC------- 221 (914)
Q Consensus 153 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------- 221 (914)
.+++.... .+++|.+.|..+ +..+...-.-......+.++|++.. +++++..+.+|.++|+.+.+.
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 15665555 367899999987 3333333335566789999999984 445555689999999987542
Q ss_pred -----EEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC
Q 002511 222 -----VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260 (914)
Q Consensus 222 -----~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~ 260 (914)
+.....-.+ -...+|.++|....+-.-|..|..|++.+
T Consensus 363 ~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332222 34678999998888888899999999875
No 344
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.11 E-value=0.0032 Score=68.92 Aligned_cols=210 Identities=10% Similarity=-0.020 Sum_probs=119.0
Q ss_pred EEEEcCCCCEEEEEecC----------C-cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCC
Q 002511 20 SVDLHPSEPWILASLYS----------G-TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNT 88 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~----------g-~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t 88 (914)
.++.+|.|..+|....+ . .|.||+ ..|+.+.++.-..+.+.++.|+.+. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 45667777777776443 1 599999 5677777776666899999998865 56677799999999986
Q ss_pred CeeeEEE-------ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcc---------cEEE-EEEc
Q 002511 89 MDKVKVF-------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSH---------YVMQ-VTFN 151 (914)
Q Consensus 89 ~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~i~~-~~~~ 151 (914)
|+....+ .-....+....+..+| ++.-..++.+.+.+--......+.+..-.. .... ..++
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 3331111 1112223333444455 333344555554432221111111100000 0000 1233
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc-cc
Q 002511 152 PKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH-TH 230 (914)
Q Consensus 152 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~ 230 (914)
. +....+....++.+.+.+-...+. +. ..+++..+++||+++ +++.-..+|.+.+.+..-.+.+..+... ..
T Consensus 188 ~-~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 S-DRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred c-CcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3 334444444455555444322211 11 246899999999988 7888888999999887666666555533 34
Q ss_pred ceEEEEEeCCC
Q 002511 231 NVSAVCFHPEL 241 (914)
Q Consensus 231 ~v~~i~~~~~~ 241 (914)
....+.|+.+.
T Consensus 261 ~p~~~~WCG~d 271 (410)
T PF04841_consen 261 PPKQMAWCGND 271 (410)
T ss_pred CCcEEEEECCC
Confidence 55677777664
No 345
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.10 E-value=0.0066 Score=67.50 Aligned_cols=243 Identities=15% Similarity=0.127 Sum_probs=137.3
Q ss_pred CEEEEEEcCCCCEEEEEe-cCC----cEEEEeCCCCceeEE-eeecCCCeEEEEEecCCCEEEEEECC-----------C
Q 002511 17 RVKSVDLHPSEPWILASL-YSG----TVCIWNYQSQTMAKS-FEVTELPVRSAKFVARKQWVVAGADD-----------M 79 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~-~~g----~v~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d-----------g 79 (914)
.+..+.+||+|+++|.+. ..| .++++|+.+|+.+.. +.... ...+.|.++++.|+....+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 345689999999999763 344 499999999976653 22221 2339999998887766432 2
Q ss_pred EEEEEECCCCeee--EEEecCCC-C-EEEEEEeCCCCEEEEEEcC----CeEEEEECCCC----ceEEEEeecCcccEEE
Q 002511 80 FIRVYNYNTMDKV--KVFEAHTD-Y-IRCVAVHPTLPYVLSSSDD----MLIKLWDWEKG----WMCTQIFEGHSHYVMQ 147 (914)
Q Consensus 80 ~i~vwd~~t~~~~--~~~~~~~~-~-i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~----~~~~~~~~~~~~~i~~ 147 (914)
.|+.|.+.+...- ..+..... . ...+..++++++|+..+.. ..+.+.+...+ ...........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776442 45544333 2 6788999999998765432 34777788763 2333333333333333
Q ss_pred EEEccCCCCEEEEEeC---CCcEEEEECCCCCC---cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC--eEEEEECCCC
Q 002511 148 VTFNPKDTNTFASASL---DRTIKIWNLGSPDP---NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH--TAKVWDYQTK 219 (914)
Q Consensus 148 ~~~~p~~~~~l~~~~~---dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 219 (914)
+... ++.+++.... ++.|...++..... ...+..+...+.-..+...++. +++....++ .|+++++..+
T Consensus 283 v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 283 VDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY-LVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE-EEEEEEETTEEEEEEEETT-T
T ss_pred EEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE-EEEEEEECCccEEEEEECCCC
Confidence 4333 3434444332 46777788877663 2244455554444444444553 444555554 4888998833
Q ss_pred ceEEEecC-cccceEEEEEeCCCCEEEEE--E--CCCeEEEEeCCCceeE
Q 002511 220 SCVQTLEG-HTHNVSAVCFHPELPIIITG--S--EDGTVRIWHATTYRLE 264 (914)
Q Consensus 220 ~~~~~~~~-~~~~v~~i~~~~~~~~l~~~--~--~dg~v~iwd~~~~~~~ 264 (914)
.....+.. ..+.|..+...++++.+... | .-+++.-||+.+++..
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 43333332 33446666656666544322 2 2357888888887753
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00016 Score=78.59 Aligned_cols=183 Identities=13% Similarity=0.088 Sum_probs=114.6
Q ss_pred hcccCCCCEEEEEEcCCCCEEEEEec---C-CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC-CC--EEE
Q 002511 10 KLAQRSERVKSVDLHPSEPWILASLY---S-GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DM--FIR 82 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp~~~~la~~~~---~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg--~i~ 82 (914)
.+..-...+..-+|+|++..++.... . ..+.++++.+++...... ..+.-...+|+|||++|+.+.. || .|.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 34444566788899999998775422 2 459999999887655554 4444556789999999887654 55 567
Q ss_pred EEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-C--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEE
Q 002511 83 VYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-M--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFA 159 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~ 159 (914)
++|+.++.. ..+....+.-+.-.|+|||++|+..++. | .|.+++++.+.....+...... ..-.|+| ++..++
T Consensus 266 ~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~Sp-dG~~i~ 341 (425)
T COG0823 266 LMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSP-DGDKIV 341 (425)
T ss_pred EEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCC-CCCEEE
Confidence 778876663 3344333334467899999998866553 3 4777777776332223222222 2677999 788887
Q ss_pred EEeCC-Cc--EEEEECCCCCCcEEEecCCCCeeEEEEeeCCC
Q 002511 160 SASLD-RT--IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD 198 (914)
Q Consensus 160 ~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 198 (914)
..+.. |. |.+.|+.++.....+. .......-+|.+++.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 77643 44 6666665554333222 233334455666665
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.07 E-value=0.002 Score=69.42 Aligned_cols=228 Identities=11% Similarity=0.151 Sum_probs=118.3
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECC--------C
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE--------K 130 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~--------~ 130 (914)
.|+.+.|+++..-|++|...|.|.||.+...+... ......-..+.+.+-+ ..++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~------~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS------LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc------ccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876433222 0001111111111100 011112222322 1
Q ss_pred CceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe--c------CCCCeeEEEEee---CCCc
Q 002511 131 GWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--A------HQKGVNCVDYFT---GGDK 199 (914)
Q Consensus 131 ~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~~---~~~~ 199 (914)
+-.+...+....++|++++.+ +-.++++|..+|.+.|.|++.+..++.-. . ....++++.|+. .++.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 234445555668899999998 57899999999999999998887665532 1 234577777763 3332
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Cce----EEEecCcccceEEEE-EeCCC---------------------CEEEEE
Q 002511 200 ---PYLITGSDDHTAKVWDYQ--T-KSC----VQTLEGHTHNVSAVC-FHPEL---------------------PIIITG 247 (914)
Q Consensus 200 ---~~l~~~~~dg~i~iwd~~--~-~~~----~~~~~~~~~~v~~i~-~~~~~---------------------~~l~~~ 247 (914)
..+++|+..|.+.+|.+- . +.. ......+.++|..+. ++.+. .+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 578999999999999764 1 211 112223455555554 32221 144444
Q ss_pred ECCCeEEEEeCCCceeEEEeecCCccEEEEEE-----ecCCCEEEEEecCCeEEE
Q 002511 248 SEDGTVRIWHATTYRLENTLNYGLERVWAIGY-----MKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 248 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~-----~~~~~~l~~~~~dg~i~i 297 (914)
+ +..++++...+.+.........-....+++ ...+..|++-..+|.+++
T Consensus 233 S-e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp --SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred c-ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 4 668999998877765544322122333444 234566677777777776
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.00068 Score=72.90 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCCeEEEEEecC-CCEEEEE----ECCC----EEEEEECCCCee--eEEE-ecCCCCEEEEEEeCCCCEEEEEEcCCeEE
Q 002511 57 ELPVRSAKFVAR-KQWVVAG----ADDM----FIRVYNYNTMDK--VKVF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIK 124 (914)
Q Consensus 57 ~~~v~~~~~s~~-~~~l~~g----~~dg----~i~vwd~~t~~~--~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 124 (914)
+....++.||-. ...+.+. +.+| .-++|++...+. +... -.....|.|++++|+...++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 334567788763 3344443 2244 245676654432 1111 14677899999999999999999999999
Q ss_pred EEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 002511 125 LWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175 (914)
Q Consensus 125 iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 175 (914)
+||...+ ... .....-..+.++|+| ++..+++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~-~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRG-VTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCC-eee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 9998876 222 223445678999999 8999999999999999998543
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00055 Score=74.57 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=100.9
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceE
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMC 134 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 134 (914)
+...|.--+++..+++++.|++.|.+++|+-.+++....-. +..+.+..+..|++..+++.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34556666778899999999999999999988765544332 33455667788888888999999999999987754222
Q ss_pred EEE-----eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCC----CCcEEEecCCCCeeEEEEe
Q 002511 135 TQI-----FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP----DPNFTLDAHQKGVNCVDYF 194 (914)
Q Consensus 135 ~~~-----~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~ 194 (914)
... -..|...|++++|++ ++..+++|...|+|..-.+.+. -....+....+.|..+++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 221 123678899999999 8999999999999999888762 1122333345666666654
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.05 E-value=0.022 Score=58.47 Aligned_cols=253 Identities=10% Similarity=0.081 Sum_probs=154.7
Q ss_pred CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC----------CCEEEEEECCCCeeeEEEecCCC------
Q 002511 37 GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD----------DMFIRVYNYNTMDKVKVFEAHTD------ 100 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----------dg~i~vwd~~t~~~~~~~~~~~~------ 100 (914)
+.++|+|..+++.+-.+...- .-.+..+|+++.+.+++. .-.|.+||..|......+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 579999999998877666432 233667999999987532 34799999999988776543222
Q ss_pred -CEEEEEEeCCCCEEEEEE--cCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECC-CCC
Q 002511 101 -YIRCVAVHPTLPYVLSSS--DDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG-SPD 176 (914)
Q Consensus 101 -~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~-~~~ 176 (914)
....+.++.+|+++++.. --..|.+.|+..+ +....+... + |...-|..+.-|.+-|.||++....+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCC
Confidence 223467888999887664 3467899999887 444433321 1 112223345678899999999999887 454
Q ss_pred CcEEE----ecCCCCee-EEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE--EEecCc----------ccceEEEEEeC
Q 002511 177 PNFTL----DAHQKGVN-CVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLEGH----------THNVSAVCFHP 239 (914)
Q Consensus 177 ~~~~~----~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~----------~~~v~~i~~~~ 239 (914)
...+. .....++. .-.+...+. .++-.+.+|.|+-.|+...... ..+... .+.-.-+++++
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred EeEeeccccCCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 43222 11222222 233333333 4555778899999888755422 122110 11223477877
Q ss_pred CCCEEEEEEC---CC-------eEEEEeCCCceeEEEeecCCccEEEEEEecCCC-EEEEE-ecCCeEEEEc
Q 002511 240 ELPIIITGSE---DG-------TVRIWHATTYRLENTLNYGLERVWAIGYMKSSR-RIVIG-YDEGTIMVKI 299 (914)
Q Consensus 240 ~~~~l~~~~~---dg-------~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~-~~dg~i~i~~ 299 (914)
..+.|.+--. +| .|-++|+.+++.+..+... ..+.+|+.+.+.+ +|.+. ..++.+.++.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6655554221 11 3788899999999888764 5677999998876 44333 3467788754
No 351
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00034 Score=76.02 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=122.9
Q ss_pred cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEE---CC-CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE
Q 002511 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGA---DD-MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY 113 (914)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~d-g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~ 113 (914)
.+.+-|.. +...+.+......+..-+|+|+++.++..+ .. ..+.++++++++...... -.+.-...+|+|||++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444543 545555555566788889999999877552 23 469999999887655554 2223345789999998
Q ss_pred EEEEE-cCCe--EEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE-EeCCCc--EEEEECCCCCCcEEEecCCCC
Q 002511 114 VLSSS-DDML--IKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRT--IKIWNLGSPDPNFTLDAHQKG 187 (914)
Q Consensus 114 l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~--i~vwd~~~~~~~~~~~~~~~~ 187 (914)
|+.+. .||. |.+.|+.++. ..+ +....+.-..-.|+| ++..++. .+..|. |.+++...+.. ..+....+.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-cee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 87554 4554 6666777763 333 333333334667999 5555554 444554 56666666554 333333333
Q ss_pred eeEEEEeeCCCcCEEEEEEc-CCe--EEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC
Q 002511 188 VNCVDYFTGGDKPYLITGSD-DHT--AKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (914)
Q Consensus 188 v~~~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 249 (914)
-..-.|+|+|+. ++..+. +|. |.+.|+.++..++.+. .......-+|.|++..++..+.
T Consensus 328 ~~~p~~SpdG~~--i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 328 NSNPVWSPDGDK--IVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcCccCCCCCCE--EEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 337789999984 554443 444 6667776655444443 3334456678888887765543
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=0.00012 Score=78.47 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=82.4
Q ss_pred EEEEEEcCCCC-EEEEE----ecCCc----EEEEeCCCCceeEE--e-eecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 18 VKSVDLHPSEP-WILAS----LYSGT----VCIWNYQSQTMAKS--F-EVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 18 v~~~~~sp~~~-~la~~----~~~g~----v~iwd~~~~~~~~~--~-~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
..++.||-..+ .+.+. +.+|. -.+|++...+..+. . -.....|.|++++|+..+++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35666766333 33332 22343 45566655433221 1 13677899999999999999999999999999
Q ss_pred CCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002511 86 YNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (914)
Q Consensus 86 ~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (914)
..++... +....-.++.++|||+|..+++|+..|.+.+||+.-+....+.
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qL 337 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQL 337 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceee
Confidence 8765332 2234456789999999999999999999999998865333333
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.03 E-value=0.0076 Score=65.99 Aligned_cols=192 Identities=7% Similarity=0.002 Sum_probs=107.2
Q ss_pred EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee-------cCcccEEEEEEcc
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNP 152 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~p 152 (914)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.++++|+... . ...+. -....+....+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~-~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE-F-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc-e-eechhhhccccCcccccccccccCC
Confidence 58999864 67777766445899999999865 5667789999999999754 2 11111 1111122222221
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCC-CcEEEecCCC---------CeeE-EEEeeCCCcCEEEEEEcCCeEEEEECCCCce
Q 002511 153 KDTNTFASASLDRTIKIWNLGSPD-PNFTLDAHQK---------GVNC-VDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (914)
Q Consensus 153 ~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (914)
+| ++.-..++.+.+..-.... ....+..... .... ..++.+ ....+....++.+.+.+-.....
T Consensus 138 -~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~--~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 138 -NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD--RVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred -CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC--cceEEEEecCCEEEEEEcccccc
Confidence 23 3333445555544322211 1111110000 0001 112222 22344444455555444322111
Q ss_pred EEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC-CccEEEEEEecCCC
Q 002511 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG-LERVWAIGYMKSSR 284 (914)
Q Consensus 222 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~ 284 (914)
+. ..+++..+++||+|++++.-..+|.+.+.+..-.+....+... ......+.|.-+..
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 22 2467999999999999999999999999987655555555544 34667888876643
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.93 E-value=0.009 Score=59.59 Aligned_cols=200 Identities=12% Similarity=0.101 Sum_probs=113.6
Q ss_pred EeeecCCCeEEEEEecCCCE-EEEEECCCEEEEEECCCCeeeEEEecC-CCCEEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 002511 52 SFEVTELPVRSAKFVARKQW-VVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 129 (914)
Q Consensus 52 ~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~vwd~~t~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 129 (914)
.+.+-...+..++|+|+.+. +++....+.|..++. +|+.++.+.-. .+....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34444556999999998665 455556788888886 47888777533 3568889998888666665568999999884
Q ss_pred CCc-----eEEEEe-----ecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC---CCCcEEE--------ecCCCCe
Q 002511 130 KGW-----MCTQIF-----EGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS---PDPNFTL--------DAHQKGV 188 (914)
Q Consensus 130 ~~~-----~~~~~~-----~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~--------~~~~~~v 188 (914)
... ...+.+ ..++..+-.++|+| .++.|+++-...-..+|.++. ....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 321 111111 12445689999999 566666677776677776654 2111111 1233456
Q ss_pred eEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcc---------cceEEEEEeCCCCEEEEEECCCeEEEE
Q 002511 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT---------HNVSAVCFHPELPIIITGSEDGTVRIW 256 (914)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~i~~~~~~~~l~~~~~dg~v~iw 256 (914)
..+.+.|..+. +++....+..|..+| .+|+.+..+.-.. ...-.|+|.++|++.++ ++-+..+.|
T Consensus 174 S~l~~~p~t~~-lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGH-LLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTE-EEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCe-EEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 78899887654 677777788999999 5577665553222 24678999999965554 566555544
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.92 E-value=0.011 Score=61.55 Aligned_cols=228 Identities=12% Similarity=0.158 Sum_probs=132.9
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE---------
Q 002511 25 PSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--------- 95 (914)
Q Consensus 25 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~--------- 95 (914)
..++.|+.|+.+| +.+++........... +..+|..+...|+-+.|++-+ |+.++++++.+.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998888 9999983322222222 333499999999888777765 499999998765443311
Q ss_pred -----ecCCCCEEEEE--EeCCCCEEEEEEcCCeEEEEECCCCc----eEEEEeecCcccEEEEEEccCCCCEEEEEeCC
Q 002511 96 -----EAHTDYIRCVA--VHPTLPYVLSSSDDMLIKLWDWEKGW----MCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (914)
Q Consensus 96 -----~~~~~~i~~~~--~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (914)
-.....+...+ -.+.+...++......|.+|.+.... ...+.+. -...+.+++|. ++.++.|..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i~v~~~- 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKICVGTS- 156 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEEEEEeC-
Confidence 11223344444 12233344444455689999887631 1222222 34668899997 467777764
Q ss_pred CcEEEEECCCCCCcEEEecC------------CCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEE--EecCccc
Q 002511 165 RTIKIWNLGSPDPNFTLDAH------------QKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ--TLEGHTH 230 (914)
Q Consensus 165 g~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~ 230 (914)
+...+.|+.++.....+... ..++..+... ++ .+|++ .++ .-.+.|. .|++.+ .+.- ..
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--e~Ll~-~~~-~g~fv~~-~G~~~r~~~i~W-~~ 229 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN--EFLLC-YDN-IGVFVNK-NGEPSRKSTIQW-SS 229 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cc--eEEEE-ecc-eEEEEcC-CCCcCcccEEEc-CC
Confidence 45788899876654333211 1223333332 22 24543 332 3333344 344332 2322 23
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC
Q 002511 231 NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 231 ~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (914)
...++++. .++|+..+. +.|.||++.++++++++...
T Consensus 230 ~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 230 APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 45566664 357777665 56999999999998888754
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0019 Score=71.40 Aligned_cols=215 Identities=13% Similarity=0.072 Sum_probs=131.5
Q ss_pred EcCCCCEEEEE-ecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC----CEEEEEECCCCeeeEEEec
Q 002511 23 LHPSEPWILAS-LYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD----MFIRVYNYNTMDKVKVFEA 97 (914)
Q Consensus 23 ~sp~~~~la~~-~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~vwd~~t~~~~~~~~~ 97 (914)
++|||+.+... -..+.+.+.|.++.+...++.... ....+.++|+|+++++.+.+ +++...+..+...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 56677765433 336778888988887777776544 45778999999999888642 2333333322222222211
Q ss_pred CCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC----CceEEEEeecCcccEEEEEEccCCCCEEEE-EeCCCcEEEEEC
Q 002511 98 HTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK----GWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRTIKIWNL 172 (914)
Q Consensus 98 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~i~vwd~ 172 (914)
. .+ -.+.++|++... .++.|.+.|..+ +......+. -......+.++| |+.++++ +..+.+|.|.|+
T Consensus 279 ~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 279 A--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred H--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEC
Confidence 0 00 133457877666 357899999987 334444433 334568899999 6666555 555899999999
Q ss_pred CCCCC------------cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC----------CceEEEecCccc
Q 002511 173 GSPDP------------NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT----------KSCVQTLEGHTH 230 (914)
Q Consensus 173 ~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~ 230 (914)
.+.+. ....... ......+|.++|. .+.+..-|..|..||+.+ ...+..+..|..
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~--aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGN--AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCC--EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 87543 2222222 2234566766554 788888899999999875 234444544443
Q ss_pred ceEE-----EEEeCCCCEEEEEEC
Q 002511 231 NVSA-----VCFHPELPIIITGSE 249 (914)
Q Consensus 231 ~v~~-----i~~~~~~~~l~~~~~ 249 (914)
+... =.-.|+|++|++...
T Consensus 428 pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 428 PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred cceeeecCCCcCCCCCCEEEEccc
Confidence 3221 123678888877653
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.02 Score=62.24 Aligned_cols=261 Identities=16% Similarity=0.106 Sum_probs=165.9
Q ss_pred CEEEEEEcCCCCEEEEEec-CCcEEEEeCCCCceeEEe-eecCCCeEEEEEecCCCEEEE-EECCCEEEEEECCCCeeeE
Q 002511 17 RVKSVDLHPSEPWILASLY-SGTVCIWNYQSQTMAKSF-EVTELPVRSAKFVARKQWVVA-GADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~vwd~~t~~~~~ 93 (914)
....+...|++..+.+... ...+.+.+.. ....... .........++.++.+..+.+ ...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4567788888865555443 2245555544 2222221 111134467788888885554 4456899999988877776
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEEc---CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEE-EeCCCcEEE
Q 002511 94 VFEAHTDYIRCVAVHPTLPYVLSSSD---DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFAS-ASLDRTIKI 169 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~-~~~dg~i~v 169 (914)
....-. ....++++|+++.+.++.. ++++.+.|..+.........+ ..+ ..++++| +++.++. -..++.|.+
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p-~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDP-DGNKVYVTNSDDNTVSV 186 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECC-CCCeEEEEecCCCeEEE
Confidence 665322 5678999999988877765 688999998887444443333 233 8899999 6665544 447899999
Q ss_pred EECCCCCCcE-E---EecCCCCeeEEEEeeCCCcCEEEEEEc-CCeEEEEECCCCceEEEecCccc-ceEEEEEeCCCCE
Q 002511 170 WNLGSPDPNF-T---LDAHQKGVNCVDYFTGGDKPYLITGSD-DHTAKVWDYQTKSCVQTLEGHTH-NVSAVCFHPELPI 243 (914)
Q Consensus 170 wd~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~ 243 (914)
.|..+..... . ..........+.+.+++...|+..... ++.+...|..++........-.. ....+..+|+|..
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 9976654332 1 111223346788888888522222222 26899999988776654221112 4567899999998
Q ss_pred EEEEEC-CCeEEEEeCCCceeEEEeecCCc---cEEEEEEecC
Q 002511 244 IITGSE-DGTVRIWHATTYRLENTLNYGLE---RVWAIGYMKS 282 (914)
Q Consensus 244 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~---~v~~i~~~~~ 282 (914)
+.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 267 ~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 267 AYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 888744 47899999888877766554422 3445555443
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=4.7e-06 Score=88.71 Aligned_cols=196 Identities=20% Similarity=0.307 Sum_probs=129.0
Q ss_pred CCCEEEEEEeCCC--CEEEEEEcCCeEEEEECCCCceE-EEEeecCcccEEEEEEccCCCCEEEEEeC----CCcEEEEE
Q 002511 99 TDYIRCVAVHPTL--PYVLSSSDDMLIKLWDWEKGWMC-TQIFEGHSHYVMQVTFNPKDTNTFASASL----DRTIKIWN 171 (914)
Q Consensus 99 ~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~p~~~~~l~~~~~----dg~i~vwd 171 (914)
...+.|++++-+. ..+++|..+|.|.+-..+...-. .....++..+.++++|++-|.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457777776544 46788999999999988754222 34556788899999999988888888743 56799999
Q ss_pred CCCC--CCcE--EEec-CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeC-CCCEEE
Q 002511 172 LGSP--DPNF--TLDA-HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP-ELPIII 245 (914)
Q Consensus 172 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~ 245 (914)
+.++ .|.. .+.+ ......+++|..+. +++++|...+.+.++|++. .+.......+..+..+...| .+.+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRq-s~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQ-SLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCc--chhhcccccchhhhhhhhh-hhhhhhhhhhhhcccceecCCCCCcee
Confidence 9876 2221 2222 34456688887444 3889999999999999983 22222222344567788888 666777
Q ss_pred EEECCCeEEEEe-CCCce-eEEEeecC----CccEEEEEEecCCC--EEEEEecCCeEEEE
Q 002511 246 TGSEDGTVRIWH-ATTYR-LENTLNYG----LERVWAIGYMKSSR--RIVIGYDEGTIMVK 298 (914)
Q Consensus 246 ~~~~dg~v~iwd-~~~~~-~~~~~~~~----~~~v~~i~~~~~~~--~l~~~~~dg~i~i~ 298 (914)
+-. ||.|.+|| ..+-+ ++..+... ..++..++|+|... ..+..-+.++|+..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 655 99999999 33322 22222211 23589999999643 33334445566553
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.82 E-value=0.0086 Score=63.82 Aligned_cols=212 Identities=15% Similarity=0.217 Sum_probs=123.5
Q ss_pred CEEEEEECCCCeeeEEEec-CCCCEEEEE---EeCC----CCEEEEEEc---------C-CeEEEEECCCC----ceEEE
Q 002511 79 MFIRVYNYNTMDKVKVFEA-HTDYIRCVA---VHPT----LPYVLSSSD---------D-MLIKLWDWEKG----WMCTQ 136 (914)
Q Consensus 79 g~i~vwd~~t~~~~~~~~~-~~~~i~~~~---~s~~----~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 136 (914)
+.|++.|..+.+.+..+.- ....+.+++ +..+ ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888887766642 233445443 3332 467777754 2 89999999883 12222
Q ss_pred -EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEE
Q 002511 137 -IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215 (914)
Q Consensus 137 -~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd 215 (914)
.-....++|++++-- ++. ++++. ++.|.+|++...+.......+..++...+....++ ++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~--~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN--YILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT--EEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc--EEEEEEcccCEEEEE
Confidence 223446788888766 344 44444 48999999987773333333333333334444444 799999888888875
Q ss_pred CCC-CceEEEec--CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCC-------c--eeE--EEeecCCccEEEE---E
Q 002511 216 YQT-KSCVQTLE--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT-------Y--RLE--NTLNYGLERVWAI---G 278 (914)
Q Consensus 216 ~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~-------~--~~~--~~~~~~~~~v~~i---~ 278 (914)
++. +..+..+. .....++++.+-+++..++++..+|.+.++.... + ++. ..+..+ ..|+++ +
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~ 234 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGS 234 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-CccceEEEEE
Confidence 543 33233332 2345588888886667999999999999997652 1 222 223322 456666 4
Q ss_pred Eec--CCC------EEEEEecCCeEEE
Q 002511 279 YMK--SSR------RIVIGYDEGTIMV 297 (914)
Q Consensus 279 ~~~--~~~------~l~~~~~dg~i~i 297 (914)
+.| .+. .++.++.+|.+..
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 444 122 3777888888774
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.82 E-value=0.066 Score=60.73 Aligned_cols=191 Identities=11% Similarity=0.038 Sum_probs=115.6
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecC-CCeE---E-------EEEecCCCEEEEEECCCEEEEEECCCCeeeEEE
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVR---S-------AKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~---~-------~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~ 95 (914)
+..|++++.++.|+-.|..+|+.+-.+.... ..+. + ++. .+..+++++.++.|.-.|..||+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999998887765321 1111 1 122 2356788888999999999999998776
Q ss_pred ecC--CC--CEEE-EEEeCCCCEEEEEEc------CCeEEEEECCCCceEEEEeecCc----------------------
Q 002511 96 EAH--TD--YIRC-VAVHPTLPYVLSSSD------DMLIKLWDWEKGWMCTQIFEGHS---------------------- 142 (914)
Q Consensus 96 ~~~--~~--~i~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~---------------------- 142 (914)
... .. .+++ .... ++ .+++++. +|.|..+|.+++..+-+......
T Consensus 147 ~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 521 10 1111 1111 33 4555542 68899999988843322211100
Q ss_pred --------ccE-EEEEEccCCCCEEEEEeCC-----C-----------cEEEEECCCCCCcEEEecCCCCe---------
Q 002511 143 --------HYV-MQVTFNPKDTNTFASASLD-----R-----------TIKIWNLGSPDPNFTLDAHQKGV--------- 188 (914)
Q Consensus 143 --------~~i-~~~~~~p~~~~~l~~~~~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~v--------- 188 (914)
..+ ..+++.| ..++++.+..+ + .|.-.|+++++....++.....+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 011 1345666 45566665522 2 56777888888776665422221
Q ss_pred eEEEEeeCCC-cCEEEEEEcCCeEEEEECCCCceE
Q 002511 189 NCVDYFTGGD-KPYLITGSDDHTAKVWDYQTKSCV 222 (914)
Q Consensus 189 ~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 222 (914)
.-+.+..++. .+.++.+..+|.+.+.|-.+|+.+
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1222222332 247889999999999999999876
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.059 Score=58.69 Aligned_cols=251 Identities=16% Similarity=0.168 Sum_probs=159.7
Q ss_pred EEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEEC-CCEEEEEECCCCeeeEE-EecCCCCEEEEEEeCCCCEEEE
Q 002511 39 VCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTLPYVLS 116 (914)
Q Consensus 39 v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~t~~~~~~-~~~~~~~i~~~~~s~~~~~l~~ 116 (914)
+.+++..+......+..+. ....+...+++..+.+... ...+...+.. ...+.. ..........++.++.++.+..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666655555544444333 4566788888865554433 2345555554 222222 2222144567889998886554
Q ss_pred E-EcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC---CCcEEEEECCCCCCcEEEecCCCCeeEEE
Q 002511 117 S-SDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLGSPDPNFTLDAHQKGVNCVD 192 (914)
Q Consensus 117 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 192 (914)
. ..+..|.+.|..+.........+. ....++++| ++..+.++.. ++++.+.|..+.+..........+ ..++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 4 445899999987764444444443 567889999 5555555444 689999999888877775544444 8899
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCceEE-E----ecCcccceEEEEEeCCCCEEEEEECC---CeEEEEeCCCceeE
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQ-T----LEGHTHNVSAVCFHPELPIIITGSED---GTVRIWHATTYRLE 264 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~----~~~~~~~v~~i~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~ 264 (914)
+.|++.. .+++-..++.|.+.|..+..... . .. ....-..+.++|+|..+.+.... +.+...|..++...
T Consensus 167 ~~p~g~~-vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 167 VDPDGNK-VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred ECCCCCe-EEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 9999884 34444578999999977655442 1 11 22234678999999966665433 58999998888766
Q ss_pred EE-eecCCccEEEEEEecCCCEEEEEecC-CeEEE
Q 002511 265 NT-LNYGLERVWAIGYMKSSRRIVIGYDE-GTIMV 297 (914)
Q Consensus 265 ~~-~~~~~~~v~~i~~~~~~~~l~~~~~d-g~i~i 297 (914)
.. ..........+..+|+|+.+.+.... +.+.+
T Consensus 245 ~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 245 ATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred EeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 55 22221145678999999988887544 45554
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.021 Score=64.76 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=137.4
Q ss_pred CEEEEEecCCcEEEEeCCCCceeEEeeecCC----CeEEEEEecCCCEEEEEEC------CCEEEEEECCCCeeeEEEec
Q 002511 28 PWILASLYSGTVCIWNYQSQTMAKSFEVTEL----PVRSAKFVARKQWVVAGAD------DMFIRVYNYNTMDKVKVFEA 97 (914)
Q Consensus 28 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~g~~------dg~i~vwd~~t~~~~~~~~~ 97 (914)
..+++++.++.+.-.|..+|+.+........ .+.+.-..-++ .+++++. +|.|..+|.+||+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4577777899999999999998876553211 11111111133 5555543 68999999999998876542
Q ss_pred CCC-------------------------------CE-EEEEEeCCCCEEEEEEcC-----C-----------eEEEEECC
Q 002511 98 HTD-------------------------------YI-RCVAVHPTLPYVLSSSDD-----M-----------LIKLWDWE 129 (914)
Q Consensus 98 ~~~-------------------------------~i-~~~~~s~~~~~l~~~~~d-----g-----------~i~iwd~~ 129 (914)
-.. .+ ..+++.|...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 01 123556656666665422 2 56777888
Q ss_pred CCceEEEEeecCcccE---------EEEEEccCCCC---EEEEEeCCCcEEEEECCCCCCcEE--------E----ecCC
Q 002511 130 KGWMCTQIFEGHSHYV---------MQVTFNPKDTN---TFASASLDRTIKIWNLGSPDPNFT--------L----DAHQ 185 (914)
Q Consensus 130 ~~~~~~~~~~~~~~~i---------~~~~~~p~~~~---~l~~~~~dg~i~vwd~~~~~~~~~--------~----~~~~ 185 (914)
++ +..-.+....+.+ .-+.... ++. .++.++.+|.+.+.|..+++++.. . ....
T Consensus 280 TG-~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 280 TG-KIKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cC-CEEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 87 3333333221111 1122222 444 788999999999999998876421 1 0000
Q ss_pred -CCe----------------------------eEEEEeeCCCcCEEEEEEc-----------------------------
Q 002511 186 -KGV----------------------------NCVDYFTGGDKPYLITGSD----------------------------- 207 (914)
Q Consensus 186 -~~v----------------------------~~~~~~~~~~~~~l~~~~~----------------------------- 207 (914)
.++ ..+++.|... ++++...
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g--~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~ 435 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTG--LFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP 435 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCC--EEEEecccccccccccccccCCCCceeccccccCCC
Confidence 000 0133333222 2221111
Q ss_pred ----CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecC
Q 002511 208 ----DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYG 270 (914)
Q Consensus 208 ----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 270 (914)
-|.|.-+|+.+++.............+. +.-.+.+++.++.+|.++.+|..+|+.+...+..
T Consensus 436 ~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 436 PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 2568888998888877665332222222 2224457777888999999999999999888765
No 363
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.69 E-value=0.065 Score=55.70 Aligned_cols=138 Identities=14% Similarity=0.200 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEe--------
Q 002511 154 DTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTL-------- 225 (914)
Q Consensus 154 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------- 225 (914)
.++.++.|+.+| |.+++........... +...|..+...+.-+ .+++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578899998888 9999983333222222 233488999888776 344443 599999998764333210
Q ss_pred ------cCcccceEEEE--EeCCCCEEEEEECCCeEEEEeCCC----c-eeEEEeecCCccEEEEEEecCCCEEEEEecC
Q 002511 226 ------EGHTHNVSAVC--FHPELPIIITGSEDGTVRIWHATT----Y-RLENTLNYGLERVWAIGYMKSSRRIVIGYDE 292 (914)
Q Consensus 226 ------~~~~~~v~~i~--~~~~~~~l~~~~~dg~v~iwd~~~----~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 292 (914)
......+...+ -.+.+...++......|.+|.... . +....+... ..+.+++|. ++.+++|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeCC
Confidence 11222344444 122333334444455888887654 2 455666555 778899998 6678888887
Q ss_pred CeEEEEc
Q 002511 293 GTIMVKI 299 (914)
Q Consensus 293 g~i~i~~ 299 (914)
+...+..
T Consensus 158 ~f~~idl 164 (275)
T PF00780_consen 158 GFYLIDL 164 (275)
T ss_pred ceEEEec
Confidence 7776643
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.66 E-value=0.036 Score=59.04 Aligned_cols=211 Identities=15% Similarity=0.258 Sum_probs=127.5
Q ss_pred CcEEEEeCCCCceeEEeeecC-CCeEEEEE---ec----CCCEEEEEEC---------C-CEEEEEECCCC----eeeEE
Q 002511 37 GTVCIWNYQSQTMAKSFEVTE-LPVRSAKF---VA----RKQWVVAGAD---------D-MFIRVYNYNTM----DKVKV 94 (914)
Q Consensus 37 g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~---s~----~~~~l~~g~~---------d-g~i~vwd~~t~----~~~~~ 94 (914)
+.|++.|..+.+.+.++.-.. ..+.+++. .. ...+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999988888877766433 34444443 32 2578888854 2 99999999874 22322
Q ss_pred E--ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-eEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEE
Q 002511 95 F--EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN 171 (914)
Q Consensus 95 ~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd 171 (914)
+ ....++|++++-- .+ +|+++. .+.|.+|++.... ............+.++... ++++++|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 2 2357789998877 33 455554 4789999999875 3333333344467777765 46999999988888875
Q ss_pred CCCC-CCcEEE--ecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-------Cc--e--EEEecCcccceEEE--
Q 002511 172 LGSP-DPNFTL--DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-------KS--C--VQTLEGHTHNVSAV-- 235 (914)
Q Consensus 172 ~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~~~~~v~~i-- 235 (914)
.+.. .....+ ......+.++.+.++++ .++++..+|.+.++.... +. . ...+. ....|+++
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~--~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDED--TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSS--EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCc--EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEE
Confidence 4432 222222 23345577888876664 799999999999998752 22 2 22222 23456666
Q ss_pred -EEeCC--C------CEEEEEECCCeEEEE
Q 002511 236 -CFHPE--L------PIIITGSEDGTVRIW 256 (914)
Q Consensus 236 -~~~~~--~------~~l~~~~~dg~v~iw 256 (914)
++.|. + +.++.++.+|.|...
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 44441 2 247777888888743
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.62 E-value=0.0055 Score=70.62 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCC-----cCEEEEEEcCCeEEEEECCCCc--eEEEe
Q 002511 154 DTNTFASAS-LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKS--CVQTL 225 (914)
Q Consensus 154 ~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 225 (914)
+.++++... ....|+-.|+..|+.+..+..+... ....+.|+.. ..-.+.|-++..+..||.+-.. ++..-
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 445555443 4578999999999999988877644 1334444321 1136778888899999998532 22211
Q ss_pred -c--CcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 226 -E--GHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 226 -~--~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
+ ......+|++-+.+| +||+|+.+|.||+||.-..+....+.+-..+|..|..+.||++|++.+..-.+.+.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 0 134457888888887 79999999999999943333333455556899999999999999998887777663
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00028 Score=75.81 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=77.8
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeE-EEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVR-SAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
.-.|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++..|..+++ +++|.|||+.||+|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568999999999999999999999999987 677788887777777 99999999999999999999999999987776
Q ss_pred EEe-cCCCCEEEEEEe
Q 002511 94 VFE-AHTDYIRCVAVH 108 (914)
Q Consensus 94 ~~~-~~~~~i~~~~~s 108 (914)
.+. .-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 632 223456666665
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00028 Score=75.76 Aligned_cols=95 Identities=9% Similarity=0.128 Sum_probs=77.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEE-EEEEeCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR-CVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (914)
...+.-+.|+|.-..||++..+|.|.+..++ .+.+.++..|...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 788999987777777 99999999999999999999999999885444
Q ss_pred EEeecCcccEEEEEEcc
Q 002511 136 QIFEGHSHYVMQVTFNP 152 (914)
Q Consensus 136 ~~~~~~~~~i~~~~~~p 152 (914)
.....-...|.++.|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43333344556666653
No 368
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.21 Score=55.80 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=79.3
Q ss_pred eeecccCCHHHHHHHHHHcCCh-----HHHHHHHHHHHHc---CChhhHHHHHHHcCC--cchhHHHHHhcCCHHHHHHH
Q 002511 647 ELAIQLGRLEVAQEIATEVQSE-----SKWKQLGELAMST---GKLEMAEGCMKQAMD--LSGLLLLYSSLGDAEGISKL 716 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~~-----~~w~~la~~al~~---~~~~~A~~~y~~~~d--~~~l~~l~~~~g~~~~~~~~ 716 (914)
.-.+..+.+..|.++|+.++-+ ....++|....++ .+-+.+...=.|..+ ..++. ...+
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iS-----------y~~i 513 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGIS-----------YAAI 513 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCcee-----------HHHH
Confidence 3345677888999999876543 3566777777766 333444442233333 22222 3568
Q ss_pred HHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHh-cCCChHHHHHHHHHHhh
Q 002511 717 ASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARS-YLPSKVSEIVAIWRKDL 778 (914)
Q Consensus 717 a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~-~~~~~~~~~~~~~~~~L 778 (914)
|+.|...|+..+|..+..+--+-.+-+.+++++++.+.|+.=|.. ..++.+-.++-+-++.+
T Consensus 514 A~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 514 ARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred HHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 888899999999888887777777788888888888888855544 44466655554444443
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.54 E-value=0.14 Score=52.75 Aligned_cols=270 Identities=9% Similarity=0.055 Sum_probs=122.9
Q ss_pred CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC----cccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 99 TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH----SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 99 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
...+..+.|.....-+++| ..+.| +-..+.+..-......- .....++.|.. ...+++| ..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecCC
Confidence 4578999998555445554 45644 33334442222221111 23466777764 4445544 445 33444455
Q ss_pred CCCcEEEe---cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce-EEEecCcccceEEEEEeCCCCEEEEEECC
Q 002511 175 PDPNFTLD---AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-VQTLEGHTHNVSAVCFHPELPIIITGSED 250 (914)
Q Consensus 175 ~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 250 (914)
++.-..+. ...+....+....++ .....+..|.|+.= ...|+. ..........+..+.-+++|.++++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~---~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG---SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT---EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC---cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 55443332 122333444443333 24444555554332 222332 22234455678889999999988888765
Q ss_pred CeEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeec
Q 002511 251 GTVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSV 330 (914)
Q Consensus 251 g~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 330 (914)
....-||.-...-...-.....+|.++.|+|++...+++ ..|.+++-.. ++..--|.
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~---------~~~~~~w~------------- 222 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD---------PDDGETWS------------- 222 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE----------TTEEEEE--------------
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC---------CCCccccc-------------
Confidence 556677743211111122245789999999997765544 7777776210 00000010
Q ss_pred ccceeccCCceeeeeeeecCCcccCCceEEECCCCCEEEEEcCCcEEEEEeec---cccc-----ccCceeEEEEecCCc
Q 002511 331 GADYEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALA---WRNR-----SFGSALEFVWSSDGE 402 (914)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~s~~g~~lav~~~~~~~i~~~~~---~~~~-----~~~~~~~~~~s~~~~ 402 (914)
....++......+-.++|.+++...|+++.|.+.. +... |+.. .......+.|.++.+
T Consensus 223 -------------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~ 288 (302)
T PF14870_consen 223 -------------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDK 288 (302)
T ss_dssp ---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTE
T ss_pred -------------cccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCc
Confidence 00011112222356889999999999998886543 3322 2221 234567788877777
Q ss_pred EEEEecCCeEEEe
Q 002511 403 YAVRESSSKIKIF 415 (914)
Q Consensus 403 ~l~~~~~~~i~v~ 415 (914)
-++.+.+|.|--|
T Consensus 289 gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEE-STTEEEEE
T ss_pred eEEECCCcEEEEe
Confidence 7777777766544
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.54 E-value=0.11 Score=57.82 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=119.1
Q ss_pred eEEEEEecCCCEEEEEE-CC----CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCC-----------eE
Q 002511 60 VRSAKFVARKQWVVAGA-DD----MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM-----------LI 123 (914)
Q Consensus 60 v~~~~~s~~~~~l~~g~-~d----g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----------~i 123 (914)
+....+||+|+++|.+- .. ..|+++|+.+|+.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34578899999998763 33 369999999998765431111 123499999988877654332 37
Q ss_pred EEEECCCCceE-EEEeecCccc--EEEEEEccCCCCEEEEEeC-C---CcEEEEECCCC----CCcEEEecCCCCeeEEE
Q 002511 124 KLWDWEKGWMC-TQIFEGHSHY--VMQVTFNPKDTNTFASASL-D---RTIKIWNLGSP----DPNFTLDAHQKGVNCVD 192 (914)
Q Consensus 124 ~iwd~~~~~~~-~~~~~~~~~~--i~~~~~~p~~~~~l~~~~~-d---g~i~vwd~~~~----~~~~~~~~~~~~v~~~~ 192 (914)
+.|.+.+.... ..++...... ...+..++ ++++++..+. . ..+.+.++..+ .....+......+....
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 88888776332 3444443332 56788888 7777665433 2 34777788764 23344443444443333
Q ss_pred EeeCCCcCEEEEEE---cCCeEEEEECCCCce---EEEecCccc--ceEEEEEeCCCCEEEEEECCC--eEEEEeCCCce
Q 002511 193 YFTGGDKPYLITGS---DDHTAKVWDYQTKSC---VQTLEGHTH--NVSAVCFHPELPIIITGSEDG--TVRIWHATTYR 262 (914)
Q Consensus 193 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~---~~~~~~~~~--~v~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~ 262 (914)
-+. ++. +++... ..+.|...++.+... ...+-.+.. .+..+....+ .+++....++ .|+++++..+.
T Consensus 284 ~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCc
Confidence 222 332 333332 246777778876552 224444444 3555555433 2444545554 58889988333
Q ss_pred eEEEeec-CCccEEEEEEecCCCEE
Q 002511 263 LENTLNY-GLERVWAIGYMKSSRRI 286 (914)
Q Consensus 263 ~~~~~~~-~~~~v~~i~~~~~~~~l 286 (914)
....+.. ..+.|..+...++++.+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDEL 385 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEE
Confidence 3333333 33445555544444443
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.53 E-value=0.047 Score=58.67 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred EEEEcCCCCEEEEEecCCcEEE---EeCCC-C----ceeEEeee---cC--CCeEEEEEec-----------CCCEEEEE
Q 002511 20 SVDLHPSEPWILASLYSGTVCI---WNYQS-Q----TMAKSFEV---TE--LPVRSAKFVA-----------RKQWVVAG 75 (914)
Q Consensus 20 ~~~~sp~~~~la~~~~~g~v~i---wd~~~-~----~~~~~~~~---~~--~~v~~~~~s~-----------~~~~l~~g 75 (914)
.++.+|++..||.+..+..+.+ |+... + .......+ ++ ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999977666555 53311 1 12222221 11 4677777654 35689999
Q ss_pred ECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeC
Q 002511 76 ADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP 109 (914)
Q Consensus 76 ~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~ 109 (914)
..+|.|++|.- +|..+..-.-|.++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999995 5666655556788888887754
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.042 Score=57.00 Aligned_cols=218 Identities=11% Similarity=0.104 Sum_probs=130.2
Q ss_pred EEEcCCCCEEE-EEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe---
Q 002511 21 VDLHPSEPWIL-ASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE--- 96 (914)
Q Consensus 21 ~~~sp~~~~la-~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~--- 96 (914)
..|.|+...|+ +--..+.|+-|+..+++. ..+..+ +.+.++.....+..|+++.. -+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 35777777444 444578899999776643 344433 33455555555555555433 35667766665533332
Q ss_pred --cCCCCEEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeC
Q 002511 97 --AHTDYIRCVAVHPTLPYVLSSSD-----------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASL 163 (914)
Q Consensus 97 --~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~ 163 (914)
......+.+...|+|.+-++... -|.|+.+|. .+ ...+....+-..-..++||| |++.|+.+..
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g-~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT 182 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG-GVVRLLDDDLTIPNGLAFSP-DGKTLYVADT 182 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC-CEEEeecCcEEecCceEECC-CCCEEEEEeC
Confidence 12235667888999876664433 143444443 33 45555555555667899999 6766666554
Q ss_pred -CCcEEEEECCC--CC---C--cEEEecCCCCeeEEEEeeCCCcCEEEEEEcCC-eEEEEECCCCceEEEecCcccceEE
Q 002511 164 -DRTIKIWNLGS--PD---P--NFTLDAHQKGVNCVDYFTGGDKPYLITGSDDH-TAKVWDYQTKSCVQTLEGHTHNVSA 234 (914)
Q Consensus 164 -dg~i~vwd~~~--~~---~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 234 (914)
.+.|..|++.. +. . ...+....+..-.++...+|. +.+++..+| .|.+|+.. ++.+..+..+...+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~--lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN--LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC--EEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 58888887752 11 1 112222345555666665665 443444444 89999988 9998888877677888
Q ss_pred EEEeC-CCCEEEEEE
Q 002511 235 VCFHP-ELPIIITGS 248 (914)
Q Consensus 235 i~~~~-~~~~l~~~~ 248 (914)
++|-. +.+.|.+.+
T Consensus 260 ~~FgG~~~~~L~iTs 274 (307)
T COG3386 260 PAFGGPDLNTLYITS 274 (307)
T ss_pred ceEeCCCcCEEEEEe
Confidence 88864 445444444
No 373
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.52 E-value=0.32 Score=56.15 Aligned_cols=403 Identities=11% Similarity=0.121 Sum_probs=200.8
Q ss_pred CCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE-ecCCCCEEEEEEeCCC------CEEEEEEcCCeEEEEECC-
Q 002511 58 LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF-EAHTDYIRCVAVHPTL------PYVLSSSDDMLIKLWDWE- 129 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~-~~~~~~i~~~~~s~~~------~~l~~~~~dg~i~iwd~~- 129 (914)
+.++..+.+.+...++.++.++.+....+..+...... ......|.|+.++|-| +.+++|..+..+.+.-..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 44555555666667888877777777777655422221 1234579999999752 267888777665544322
Q ss_pred CCceEEEE-eec--CcccEEEEEEccCCCCEEEEEeCCCcEEEEECC--CCCCc--EEEecCCCCeeEEEEeeCCCcCEE
Q 002511 130 KGWMCTQI-FEG--HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLG--SPDPN--FTLDAHQKGVNCVDYFTGGDKPYL 202 (914)
Q Consensus 130 ~~~~~~~~-~~~--~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l 202 (914)
........ +.+ -+..|.-..+-. +..+|.++..||.+..|-+. ++... ++..-...|+.--.|+..+.. .+
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t-~v 645 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT-AV 645 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce-EE
Confidence 22122222 111 123344455554 57899999999999776554 33221 111223445555556555543 34
Q ss_pred EEEEcCCeEEEEECCCCceEEEecCcccceEEEE-EeC-C-CCEEEEEECCCeEEEEeCCCcee--EEEeecCCccEEEE
Q 002511 203 ITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC-FHP-E-LPIIITGSEDGTVRIWHATTYRL--ENTLNYGLERVWAI 277 (914)
Q Consensus 203 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~-~~~-~-~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~i 277 (914)
+++ +|+-..+|..+ ++.+.+-- .-..+..+| |+. . ...++++. .+.+++..+..-+. ++++..+ .....+
T Consensus 646 fa~-sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI 720 (1096)
T KOG1897|consen 646 FAL-SDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRI 720 (1096)
T ss_pred EEe-CCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhhe
Confidence 444 45555566544 44332211 011122221 221 1 12455544 55777776654332 3343333 566778
Q ss_pred EEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCcc--cC
Q 002511 278 GYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCD--LY 355 (914)
Q Consensus 278 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~ 355 (914)
++.+....+.+.+......... +.....+..+.+ +.....-.+...++...+ ..
T Consensus 721 ~~q~~sl~~~v~s~r~e~~~~~----------------~~ee~~~s~l~v--------lD~nTf~vl~~hef~~~E~~~S 776 (1096)
T KOG1897|consen 721 CYQESSLTFGVLSNRIESSAEY----------------YGEEYEVSFLRV--------LDQNTFEVLSSHEFERNETALS 776 (1096)
T ss_pred EecccceEEEEEecccccchhh----------------cCCcceEEEEEE--------ecCCceeEEeeccccccceeee
Confidence 8887666666665544333210 000111111110 000111111112222222 12
Q ss_pred CceEEECCC-CCEEEEEc-----------CCcEEEEEeecccc-------cccCceeEEEEecCCcEEEEecCCeEEEec
Q 002511 356 PQSLKHNPN-GRFVVVCG-----------DGEYIIYTALAWRN-------RSFGSALEFVWSSDGEYAVRESSSKIKIFS 416 (914)
Q Consensus 356 ~~~l~~s~~-g~~lav~~-----------~~~~~i~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~~~i~v~~ 416 (914)
+-+..|..| +.+++||+ .|.+++|....... .-.|.+.++.- -+|+++|. -+..|++|+
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~-In~~vrLye 854 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG-INQSVRLYE 854 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe-cCcEEEEEE
Confidence 334456666 77888885 27788887665211 11233333321 25555554 356788877
Q ss_pred cCcccceeeec-Ccccc-ee---ecCcEEEEEeCC---eEEEEeccCCcEEEEEE----cceeEEEEcCCCCEEEEEeCC
Q 002511 417 KNFQEKRSVRP-TFSAE-RI---YGGTLLAMCSND---FICFYDWAECRLIRRID----VTVKNLYWADSGDLVAIASDT 484 (914)
Q Consensus 417 ~~~~~~~~~~~-~~s~~-~i---~~g~~La~~~~~---~i~~~d~~~~~~i~~~~----~~i~~v~~s~dg~~la~~~~~ 484 (914)
...+..-.... .+.|. .+ ..|..+++++-- ++..|+-..|..+-.-+ ...+.+.+-.+..++.+-...
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~g 934 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSG 934 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccc
Confidence 54431111111 11111 11 147788887644 77778777766554333 256667777777777666666
Q ss_pred eEEEEEecH
Q 002511 485 SFYILKYNR 493 (914)
Q Consensus 485 ~~~~~~~~~ 493 (914)
+++++.+++
T Consensus 935 Nlf~v~~d~ 943 (1096)
T KOG1897|consen 935 NLFTVRKDS 943 (1096)
T ss_pred cEEEEEecC
Confidence 677766553
No 374
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.49 E-value=0.35 Score=55.84 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=92.4
Q ss_pred EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccC--CCC-
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPK--DTN- 156 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~--~~~- 156 (914)
.|++++-. ....... ....++....+.+...++.++.++.+...++..+......-......|.|+.++|- +.+
T Consensus 471 ~iRl~ss~--~~~~~W~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~ 547 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWR-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNK 547 (1096)
T ss_pred cEEEEcch--hhhhccc-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCc
Confidence 46666543 1222333 23446666666666678888887877777777653122222233567899999873 344
Q ss_pred --EEEEEeCCCcEEEEEC-CCCCCcEEE-ec---CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC--CCceEEEe--
Q 002511 157 --TFASASLDRTIKIWNL-GSPDPNFTL-DA---HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ--TKSCVQTL-- 225 (914)
Q Consensus 157 --~l~~~~~dg~i~vwd~-~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~-- 225 (914)
.+++|.++..+.+.-. .....+... .. -+..|--..+- ++..+|.++..||.+.-|-+. ++..-..-
T Consensus 548 s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~ 625 (1096)
T KOG1897|consen 548 SRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDINTGQLSDRKKV 625 (1096)
T ss_pred ceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEee--ccceEEEEEcCCceEEEEEEEcccceEcccccc
Confidence 7888888777655433 222221111 11 11223233332 224489999999998766544 44322111
Q ss_pred cCcccceEEEEEeCCCCEEEEEECCCeEEEEe
Q 002511 226 EGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257 (914)
Q Consensus 226 ~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd 257 (914)
.-...+++--.|+..++.-+.+..|.-..+|.
T Consensus 626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~ 657 (1096)
T KOG1897|consen 626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYS 657 (1096)
T ss_pred ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe
Confidence 12234555556665544333334455555665
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.41 E-value=0.0089 Score=68.09 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=103.4
Q ss_pred CCEEEEEEcCCCCEEEEEe------cCC--cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC---------
Q 002511 16 ERVKSVDLHPSEPWILASL------YSG--TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--------- 78 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~------~~g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--------- 78 (914)
..+.+.++||+|..+|... .++ .+.+++. .+.. ..+.. ....+.-.|+|+|++|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999888765 233 4555564 2322 33322 2247889999999988877543
Q ss_pred ---CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEE---EECCCCceEE----EEeecCcccEEEE
Q 002511 79 ---MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKL---WDWEKGWMCT----QIFEGHSHYVMQV 148 (914)
Q Consensus 79 ---g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i---wd~~~~~~~~----~~~~~~~~~i~~~ 148 (914)
+.+.+.++..+.... ...+.|..+.|||||.+++... +|.|.+ -....+.... .....-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333333332222 2245799999999999988766 477777 4433442111 1112223346789
Q ss_pred EEccCCCCEEEEEeCCCcEEEE--ECCCCCCcEEEec--CCCCeeEEEEeeCCCcCEEEEEEcCCeEEE
Q 002511 149 TFNPKDTNTFASASLDRTIKIW--NLGSPDPNFTLDA--HQKGVNCVDYFTGGDKPYLITGSDDHTAKV 213 (914)
Q Consensus 149 ~~~p~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~i 213 (914)
.|.+ ++. |+++..++.-.+| ++...... .+.. ...++..++-++ . .+++...+|.+.+
T Consensus 503 ~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~--~--~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASP--S--TVYVTDARAVLQL 564 (591)
T ss_pred eEec-CCE-EEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCC--c--eEEEEcCCceEEe
Confidence 9997 555 4565555444444 44433222 1122 245555665543 2 3555566664444
No 376
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.35 E-value=0.25 Score=51.03 Aligned_cols=230 Identities=12% Similarity=0.103 Sum_probs=105.0
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEE--ecC---CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 002511 56 TELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVF--EAH---TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK 130 (914)
Q Consensus 56 ~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~--~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 130 (914)
...++..+.|.....-+++| ..+.| +-..+.|+.=... ... .-...++.|..+ ...+++..|. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGEPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcCCce-EEEecCC
Confidence 45688999998656666665 45544 2222333221111 111 123567777643 3344455553 4444455
Q ss_pred CceEEEEee--cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCC-cEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 131 GWMCTQIFE--GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDP-NFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 131 ~~~~~~~~~--~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
+....++.. .-......+.... + ......+..|.|..- .+.++. ........+.+..+.-++++. +++++..
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~-~-~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~ 164 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALG-D-GSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSR 164 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEE-T-TEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS---EEEEETT
T ss_pred CCCcEEeecCCCCCCCeeEEEEcC-C-CcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECc
Confidence 544443321 2223334444433 2 344444555655433 233433 222344556777877777776 6666655
Q ss_pred CCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEe-CCCceeEEE----eecCCccEEEEEEecC
Q 002511 208 DHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH-ATTYRLENT----LNYGLERVWAIGYMKS 282 (914)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~i~~~~~ 282 (914)
...+.-||.-...-...-+.....|.++.|.|++.+.+.+ ..|.|++=+ ......... +....-.+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 5555677753222222223346789999999998766654 788888877 222222111 1112234789999988
Q ss_pred CCEEEEEecCCeEEE
Q 002511 283 SRRIVIGYDEGTIMV 297 (914)
Q Consensus 283 ~~~l~~~~~dg~i~i 297 (914)
+...++|+ +|.+..
T Consensus 244 ~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV 257 (302)
T ss_dssp S-EEEEES-TT-EEE
T ss_pred CCEEEEeC-CccEEE
Confidence 77666554 455544
No 377
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.27 E-value=0.19 Score=54.71 Aligned_cols=152 Identities=11% Similarity=0.063 Sum_probs=91.6
Q ss_pred CCCEEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCceeEEeeecCCCeEEEEEecC----CCEEEEEECCCEEEEEECC-
Q 002511 15 SERVKSVDLHPSEPWILASL--YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVAR----KQWVVAGADDMFIRVYNYN- 87 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~g~~dg~i~vwd~~- 87 (914)
-.+|..++|..-...+++.. .+|.+++=| ...+..|+ .|..+.|.|- ...|.+......|.||.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 34688899975444444443 355554433 22333333 4889999985 3456666778899999875
Q ss_pred ----CCeeeEEEecCC-----CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEE
Q 002511 88 ----TMDKVKVFEAHT-----DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 88 ----t~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
+.+.+..-..+- --...+.|||....|++-.....=.++++.......+.-....+.|.|.+|.+ ||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEE
Confidence 222222211111 11246789999988877666555456666644344443335667899999999 66665
Q ss_pred EEE-eCCCcEEEEECCC
Q 002511 159 ASA-SLDRTIKIWNLGS 174 (914)
Q Consensus 159 ~~~-~~dg~i~vwd~~~ 174 (914)
+++ +..=.-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 554 4444567888543
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.21 E-value=0.043 Score=46.15 Aligned_cols=102 Identities=20% Similarity=0.389 Sum_probs=70.2
Q ss_pred eeEEEEee---CCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeE
Q 002511 188 VNCVDYFT---GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE 264 (914)
Q Consensus 188 v~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 264 (914)
|++++++. +|. +-|++|+.|..|++|+- ...+..+. ....|++++-... ..++.+..+|+|-+|+-. ..+
T Consensus 2 V~al~~~d~d~dg~-~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGE-NELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRL 74 (111)
T ss_pred eeEEEEEecCCCCc-ceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--cee
Confidence 55666554 222 47999999999999984 46666666 4456788877776 568889999999999852 334
Q ss_pred EEeecCCccEEEEEEecCC----CEEEEEecCCeEEE
Q 002511 265 NTLNYGLERVWAIGYMKSS----RRIVIGYDEGTIMV 297 (914)
Q Consensus 265 ~~~~~~~~~v~~i~~~~~~----~~l~~~~~dg~i~i 297 (914)
+..+.. ..+.++.+..-. .-|++|-.+|.+-+
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 444433 346666654432 36888988888754
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.072 Score=52.79 Aligned_cols=165 Identities=10% Similarity=0.112 Sum_probs=118.5
Q ss_pred cccCCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeec-CCCeEEEEEecCCCEEEEEECCCEEEEEECCCC
Q 002511 11 LAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTM 89 (914)
Q Consensus 11 l~~h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~ 89 (914)
+.|-...|.++.|+|+.+.|.+......-.|+=..+|+.+.++... -...-.+.+..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4455666999999999999888887777778877889998887632 233466888888888877777888988877654
Q ss_pred eeeEEE----------ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE--EEeecC-------cccEEEEEE
Q 002511 90 DKVKVF----------EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGH-------SHYVMQVTF 150 (914)
Q Consensus 90 ~~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-------~~~i~~~~~ 150 (914)
..+..+ ...+.....++|.|.+..|+.+-+..-+.||.+....... .....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 222111 1225568899999999999999888778887766432111 111111 134778889
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCC
Q 002511 151 NPKDTNTFASASLDRTIKIWNLGSP 175 (914)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~vwd~~~~ 175 (914)
++..+++++.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 9878888999999999988887543
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.19 E-value=0.11 Score=49.42 Aligned_cols=214 Identities=11% Similarity=0.132 Sum_probs=115.1
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCC--CEEEE-EECCCEEEEEEC--CCCeeeEEEe-----
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARK--QWVVA-GADDMFIRVYNY--NTMDKVKVFE----- 96 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-g~~dg~i~vwd~--~t~~~~~~~~----- 96 (914)
+.++.+--..|.|+-||+.+.+..+. +....++.++.+--.+ +-+++ ++..-.|.-||. ..-....++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 44555555677888899876543322 2111223333332222 22333 333334445662 2223333321
Q ss_pred cCCCCEEEEEEeCCCCEEEEEEc---------CCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 97 AHTDYIRCVAVHPTLPYVLSSSD---------DMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 97 ~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
....+.+.-..+|+|++..-.-. .|.++.|-.... +..+ ...-.--..++|+.+.....++-+.+-+|
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~--v~~i-~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ--VELI-WNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC--ceee-ehhccCCccccccccCcEEEEEccCceEE
Confidence 11345666778999988442222 244444443322 1111 11112235678887334445566677788
Q ss_pred EEEE--CCCCC-----CcEEEec----CCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEE
Q 002511 168 KIWN--LGSPD-----PNFTLDA----HQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVC 236 (914)
Q Consensus 168 ~vwd--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 236 (914)
.-|| ..++. .+..++. .......+++.. .+.+.+++...++|...|..+|+.+.+++-....|+++|
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7787 44442 2233321 111123444433 444788888899999999999999999998889999999
Q ss_pred EeCC-CCEEEE
Q 002511 237 FHPE-LPIIIT 246 (914)
Q Consensus 237 ~~~~-~~~l~~ 246 (914)
|-.- -..+.+
T Consensus 261 FgGkn~d~~yv 271 (310)
T KOG4499|consen 261 FGGKNLDILYV 271 (310)
T ss_pred ecCCCccEEEE
Confidence 9653 234443
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.0079 Score=69.08 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=76.4
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCC-eeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEE
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTM-DKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQI 137 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 137 (914)
++..++-.-.+.+++.|++.|.+-..|+.+. .+...-..-.++|++++|+.+|..++.|-.+|.|.+||...+ ...+.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~ 167 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKV 167 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceee
Confidence 3444444446678999999999999887642 111222234578999999999999999999999999999987 55666
Q ss_pred eecCcccEEEE---EEccCCCCEEEEEeCCCcEEEEEC
Q 002511 138 FEGHSHYVMQV---TFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 138 ~~~~~~~i~~~---~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
+..|..+.+.+ .+.. ++..++++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 65555444433 3333 4556777777775 5554
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.03 Score=59.48 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=100.1
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCE-----EEEEEcCCeEEEEECCCC-c-eEEEe
Q 002511 154 DTNTFA-SASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPY-----LITGSDDHTAKVWDYQTK-S-CVQTL 225 (914)
Q Consensus 154 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~iwd~~~~-~-~~~~~ 225 (914)
+.++++ ++..-..|+-.|+..|+.+..+..+.. |+-+.+.|+..... -+.|-++..|.-||.+-. . .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455556788889999999888876655 78888888764322 356777888999998732 2 22222
Q ss_pred cCc----ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeE-EEeecCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 226 EGH----THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE-NTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 226 ~~~----~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
++| .....|++-..+| +|++||.+|.|++||. .++.- ..+++-..+|..+..+.+|++|++.+..-.+.+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEE
Confidence 222 3346777777776 8999999999999996 55543 445555678999999999999988887665555
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.14 E-value=0.049 Score=62.23 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=103.8
Q ss_pred CCeEEEEEecCCCEEEEEE------CCC--EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC---------
Q 002511 58 LPVRSAKFVARKQWVVAGA------DDM--FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--------- 120 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~------~dg--~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------- 120 (914)
..+...+++|+|+.++... .|. .|.+++.. +.......+ ...+.-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999988765 233 55555653 233222232 237889999998888776532
Q ss_pred ---CeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEE---EECCCCCCc----EEEec-CCCCee
Q 002511 121 ---MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKI---WNLGSPDPN----FTLDA-HQKGVN 189 (914)
Q Consensus 121 ---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~v---wd~~~~~~~----~~~~~-~~~~v~ 189 (914)
+.+.+.+++.++. .. ...+.|..+.|+| |+..++... ++.|.+ -....+... ..+.. ....+.
T Consensus 427 ~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAV-AS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchh-hh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence 2333334433311 11 2345699999999 787777665 477777 443444311 11222 223357
Q ss_pred EEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEecC--cccceEEEEEeCCCCEEEEEECCCeEEE
Q 002511 190 CVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLEG--HTHNVSAVCFHPELPIIITGSEDGTVRI 255 (914)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~dg~v~i 255 (914)
.+.|..++. |+++..++.-.+|.+.- |.....+.. ...++.+++-+++ .++....+|.+.+
T Consensus 501 ~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 501 SLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cceEecCCE---EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 889998876 55665554444444321 322222222 2456777777763 3555555664443
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.13 E-value=0.027 Score=47.38 Aligned_cols=100 Identities=9% Similarity=0.058 Sum_probs=70.0
Q ss_pred EEEEEEcC---CC-CEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 18 VKSVDLHP---SE-PWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 18 v~~~~~sp---~~-~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
|++|++.. || +.|++|+.|..|+||+ ..+.+..+.. ...|+++.-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 66777655 33 4799999999999998 3456666663 456777776666 56999999999999985 34455
Q ss_pred EEecCCCCEEEEEEeCC---C-CEEEEEEcCCeEE
Q 002511 94 VFEAHTDYIRCVAVHPT---L-PYVLSSSDDMLIK 124 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~---~-~~l~~~~~dg~i~ 124 (914)
..+... .+.++.+..- | +.|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555333 3666666542 2 3688888888774
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.12 E-value=0.026 Score=64.69 Aligned_cols=217 Identities=8% Similarity=0.017 Sum_probs=104.8
Q ss_pred cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC------CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCC
Q 002511 38 TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTL 111 (914)
Q Consensus 38 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~ 111 (914)
.+..||..+++....-.............-++...++|+.+ ..+..||..+......-.-....-......-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 57788887765332111111111111222366677777753 357788887765432211111111111222356
Q ss_pred CEEEEEEcCC-----eEEEEECCCCceEEE--EeecCcccEEEEEEccCCCCEEEEEeCCC-------------------
Q 002511 112 PYVLSSSDDM-----LIKLWDWEKGWMCTQ--IFEGHSHYVMQVTFNPKDTNTFASASLDR------------------- 165 (914)
Q Consensus 112 ~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~l~~~~~dg------------------- 165 (914)
...+.|+.++ .+..||..++ .... .+.........+.. ++.+.+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccccc
Confidence 6667777653 4788998865 2222 11111111112222 567777777653
Q ss_pred ----cEEEEECCCCCCcEEEecCCCCee-EEEEeeCCCcCEEEEEEcC------CeEEEEECCC-Cce--EEEecCcccc
Q 002511 166 ----TIKIWNLGSPDPNFTLDAHQKGVN-CVDYFTGGDKPYLITGSDD------HTAKVWDYQT-KSC--VQTLEGHTHN 231 (914)
Q Consensus 166 ----~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~--~~~~~~~~~~ 231 (914)
++..||..+.+-...-.-...... +++ .-++. +.+.|+.+ ..+..||..+ .+- +..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~--IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDD--IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCE--EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 467788766532211111111111 222 22333 55666543 2467888876 332 2233222222
Q ss_pred eEEEEEeCCCCEEEEEECCC--eEEEEeCCCcee
Q 002511 232 VSAVCFHPELPIIITGSEDG--TVRIWHATTYRL 263 (914)
Q Consensus 232 v~~i~~~~~~~~l~~~~~dg--~v~iwd~~~~~~ 263 (914)
...+.+ ++++.++||.+| .+..||..+.+-
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 222222 667888999888 677777766553
No 386
>PRK10115 protease 2; Provisional
Probab=97.11 E-value=0.99 Score=53.24 Aligned_cols=237 Identities=10% Similarity=0.004 Sum_probs=125.1
Q ss_pred CEEEEEEcCCCCEEEEEec-----CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC------CEEEEEE
Q 002511 17 RVKSVDLHPSEPWILASLY-----SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD------MFIRVYN 85 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~-----~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd 85 (914)
.+..+.|||||++|+.+.. ...|++.|+.+|..+...-... -..++|++|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4778899999999987644 2348899998886432211111 1469999999887766442 3788889
Q ss_pred CCCC--eeeEEEecCCCCEE-EEEEeCCCCEEEEEEc---CCeEEEEECC--CCceEEEEeecCcccEEEEEEccCCCCE
Q 002511 86 YNTM--DKVKVFEAHTDYIR-CVAVHPTLPYVLSSSD---DMLIKLWDWE--KGWMCTQIFEGHSHYVMQVTFNPKDTNT 157 (914)
Q Consensus 86 ~~t~--~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 157 (914)
+.++ +-...+........ .+..+.++++++..+. ++.+.+++.. .+ .....+.........+. +. ++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~~ 281 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HY--QHR 281 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eC--CCE
Confidence 9887 44445553333333 3333447887765443 3578888853 23 22222222222222222 32 234
Q ss_pred EEEEeCC----CcEEEEECCCCCCcEEEecC-C-CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCC-CceEEEec-Ccc
Q 002511 158 FASASLD----RTIKIWNLGSPDPNFTLDAH-Q-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQT-KSCVQTLE-GHT 229 (914)
Q Consensus 158 l~~~~~d----g~i~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~-~~~ 229 (914)
|...+.. ..|...++........+..+ . ..+..+.++ ++. ++++...+|.-+++-+.. +..+..+. ...
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~-l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~ 358 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDW-LVVEERQRGLTSLRQINRKTREVIGIAFDDP 358 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCE-EEEEEEeCCEEEEEEEcCCCCceEEecCCCC
Confidence 4433332 23444455422222333334 2 357777776 332 566666677655544332 22334333 222
Q ss_pred cceEEEEEe--CCCC-EEEEEE---CCCeEEEEeCCCce
Q 002511 230 HNVSAVCFH--PELP-IIITGS---EDGTVRIWHATTYR 262 (914)
Q Consensus 230 ~~v~~i~~~--~~~~-~l~~~~---~dg~v~iwd~~~~~ 262 (914)
..+..+.++ +++. ++++.+ .-+.+..+|..+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 223333444 3433 443333 34678888887664
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.17 Score=52.57 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=128.6
Q ss_pred EEecCCCEEEE-EECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEee---
Q 002511 64 KFVARKQWVVA-GADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFE--- 139 (914)
Q Consensus 64 ~~s~~~~~l~~-g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 139 (914)
.|.++...|+- --..+.|.-|+..+++. ..+.. .+.+.++..-..+..|+++.. .+.+++.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 46777775544 44477899999876543 33332 333455555444445555443 356677665533122211
Q ss_pred c-CcccEEEEEEccCCCCEEEEEeC-----------CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 140 G-HSHYVMQVTFNPKDTNTFASASL-----------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 140 ~-~~~~i~~~~~~p~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
+ .......+...| ++.+.++... -|.|+.+|. .+.....+..+-..-+.++|||+++. ++++=+.
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t-ly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT-LYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE-EEEEeCC
Confidence 1 123455677777 5555444332 133444443 44445555554566689999999973 4444455
Q ss_pred CCeEEEEECCC--C----ce-EEEecCcccceEEEEEeCCCCEEEEEECCC-eEEEEeCCCceeEEEeecCCccEEEEEE
Q 002511 208 DHTAKVWDYQT--K----SC-VQTLEGHTHNVSAVCFHPELPIIITGSEDG-TVRIWHATTYRLENTLNYGLERVWAIGY 279 (914)
Q Consensus 208 dg~i~iwd~~~--~----~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (914)
.+.|.-|++.. + +. ...+....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+...+.+++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 58888887752 1 11 122222345566788888888775555444 89999988 9999888888677788887
Q ss_pred ec-CCCEEEEEec
Q 002511 280 MK-SSRRIVIGYD 291 (914)
Q Consensus 280 ~~-~~~~l~~~~~ 291 (914)
-- +.+.|.+.+.
T Consensus 263 gG~~~~~L~iTs~ 275 (307)
T COG3386 263 GGPDLNTLYITSA 275 (307)
T ss_pred eCCCcCEEEEEec
Confidence 53 3455554443
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.27 Score=48.33 Aligned_cols=241 Identities=14% Similarity=0.149 Sum_probs=133.0
Q ss_pred EEEEEccCCCCEEEEEeCCCc-EEEEECCCCCCcEEEecCCCCe--eEEEEeeCCCcCEEEEEEcC-----CeEEEEECC
Q 002511 146 MQVTFNPKDTNTFASASLDRT-IKIWNLGSPDPNFTLDAHQKGV--NCVDYFTGGDKPYLITGSDD-----HTAKVWDYQ 217 (914)
Q Consensus 146 ~~~~~~p~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 217 (914)
..++++|.....++.+-.-|+ ..++|.++.+...++...++.- -.=.|+|+|. +|...-.| |.|-|||.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--LLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--EEEeecCCCCCCCceEEEEecc
Confidence 457788866777777777666 4678988877666654333221 1235888887 56554433 779999987
Q ss_pred CC-ceEEEecCcccceEEEEEeCCCCEEEEEEC------------------CCeEEEEeCCCceeEEEeec----CCccE
Q 002511 218 TK-SCVQTLEGHTHNVSAVCFHPELPIIITGSE------------------DGTVRIWHATTYRLENTLNY----GLERV 274 (914)
Q Consensus 218 ~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~------------------dg~v~iwd~~~~~~~~~~~~----~~~~v 274 (914)
.+ +.+-.+..|.-.-..+.|.+||+.++.... .-++.+.|..+|.++..... +.-++
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 53 456677777777788999999998887532 11234444445554432221 22345
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeeeecCCccc
Q 002511 275 WAIGYMKSSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVKELGTCDL 354 (914)
Q Consensus 275 ~~i~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 354 (914)
..+...+||..++.+--.|. -...++++.+...|+.+ ..+. ++-........
T Consensus 229 RHld~g~dgtvwfgcQy~G~----~~d~ppLvg~~~~g~~l-------~~~~-----------------~pee~~~~~an 280 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGP----RNDLPPLVGHFRKGEPL-------EFLD-----------------LPEEQTAAFAN 280 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCC----CccCCcceeeccCCCcC-------cccC-----------------CCHHHHHHHHh
Confidence 55666555544333221111 01122222222211111 1111 11111122334
Q ss_pred CCceEEECCCCCEEEEEc--CCcEEEEEeecccccccCceeEEEE-e-cCCcEEEEecCCeEEEec
Q 002511 355 YPQSLKHNPNGRFVVVCG--DGEYIIYTALAWRNRSFGSALEFVW-S-SDGEYAVRESSSKIKIFS 416 (914)
Q Consensus 355 ~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~~~~~~~~~~~~~~-s-~~~~~l~~~~~~~i~v~~ 416 (914)
++-+++.+.+..+++..+ .+.+.+|+..+........+.+.+- . ..+-++++...|++..++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceEEecc
Confidence 778899888878887776 6778888887765444333322211 1 233466666677777663
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.17 Score=50.22 Aligned_cols=188 Identities=9% Similarity=0.057 Sum_probs=120.2
Q ss_pred eecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecC-CCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 002511 54 EVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAH-TDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 132 (914)
Q Consensus 54 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 132 (914)
.+-...+.++.|+|+.+.|++......-.|+=..+|+.+.++.-. -.....+.+..+|++.++--.++.+.++.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344455999999999999999988888888888889999887521 2234668888888888887788888888776542
Q ss_pred eEEE---------EeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE---ecC-------CCCeeEEEE
Q 002511 133 MCTQ---------IFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL---DAH-------QKGVNCVDY 193 (914)
Q Consensus 133 ~~~~---------~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~-------~~~v~~~~~ 193 (914)
.... .....+...-.++|.| ....|+.+-+-.-+.||........... ..+ -..|.++.|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2211 1112245678899999 6667777777777777766533211111 111 123556667
Q ss_pred eeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCccc---------ceEEEEEeCCCCEE
Q 002511 194 FTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH---------NVSAVCFHPELPII 244 (914)
Q Consensus 194 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l 244 (914)
.+..+. +++-+..++.+.-.|.. |..+..+.-+.+ ..-.++..++|.+.
T Consensus 241 ~~~~~~-LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 241 NAITNS-LLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred cCCCCc-EEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 655443 67777777888888865 554443322111 13356666666533
No 390
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.97 E-value=0.42 Score=47.61 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCEEEEEecCC--cEEEEeCCCCceeEEeeecCC-CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 18 VKSVDLHPSEPWILASLYSG--TVCIWNYQSQTMAKSFEVTEL-PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g--~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
...+.|..+|.++-+.+.-| .|+.+|+.+++.......... ---.++... ++.....-.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEE
Confidence 45677767777767766655 699999999988766554321 122233332 23333445689999999999999998
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeec--Cc---ccEEEEEEccCCCCEEEEEeCCCcEEE
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEG--HS---HYVMQVTFNPKDTNTFASASLDRTIKI 169 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~~p~~~~~l~~~~~dg~i~v 169 (914)
+.-. +.=..++ .+++.|+.+.....|.++|..+... ...+.. .. ..+.-+.|. ++...+-.-....|..
T Consensus 126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEE
T ss_pred EecC-CcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEE
Confidence 8743 3445566 4677788887788999999887633 322221 12 234556666 4666666666677888
Q ss_pred EECCCCCCcEEEe---------------cCCCCeeEEEEeeCCCcCEEEEE
Q 002511 170 WNLGSPDPNFTLD---------------AHQKGVNCVDYFTGGDKPYLITG 205 (914)
Q Consensus 170 wd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~l~~~ 205 (914)
.|..+|+....+. ....-.+.|+|.|..+. ++++|
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-LFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-EEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-EEEEe
Confidence 8888887655442 01345789999988774 56665
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.92 E-value=0.76 Score=48.85 Aligned_cols=192 Identities=14% Similarity=0.144 Sum_probs=96.6
Q ss_pred CCCEEEEEE-CCCEEEEEECCC----CeeeEEEec---C----CCCEEEEEEeCCCCEEEEEEc------CCeEEEEECC
Q 002511 68 RKQWVVAGA-DDMFIRVYNYNT----MDKVKVFEA---H----TDYIRCVAVHPTLPYVLSSSD------DMLIKLWDWE 129 (914)
Q Consensus 68 ~~~~l~~g~-~dg~i~vwd~~t----~~~~~~~~~---~----~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~ 129 (914)
..++|+..+ .++.|+|+|+.+ .+..+++.. + -.....+..-|+|..++++-. -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 688999999874 344555542 1 122344555678888887632 3668888877
Q ss_pred CCceEEEEeec---CcccEEEEEEccCCCCEEEEEeC--------------------CCcEEEEECCCCCCcEEEecCCC
Q 002511 130 KGWMCTQIFEG---HSHYVMQVTFNPKDTNTFASASL--------------------DRTIKIWNLGSPDPNFTLDAHQK 186 (914)
Q Consensus 130 ~~~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~ 186 (914)
+. .+...... ....-..+.|.| ..+.++++.. ..++.+||+.+.+.++++.-...
T Consensus 166 tf-~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TF-EVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc-cccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 65 34444332 233456777888 7788888653 35799999999999888875443
Q ss_pred --CeeEEEEeeCCCcCEEEEEE-cCCeEEEEEC-CCCc----eEEEecCc-----------------ccceEEEEEeCCC
Q 002511 187 --GVNCVDYFTGGDKPYLITGS-DDHTAKVWDY-QTKS----CVQTLEGH-----------------THNVSAVCFHPEL 241 (914)
Q Consensus 187 --~v~~~~~~~~~~~~~l~~~~-~dg~i~iwd~-~~~~----~~~~~~~~-----------------~~~v~~i~~~~~~ 241 (914)
-+..+.|.++.+..+=++++ -..+|..|-- ..++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 34578888776655544443 3444554432 3332 12222111 2347899999999
Q ss_pred CEEEEEE-CCCeEEEEeCCCc
Q 002511 242 PIIITGS-EDGTVRIWHATTY 261 (914)
Q Consensus 242 ~~l~~~~-~dg~v~iwd~~~~ 261 (914)
++|.+++ ..|.|+.||+...
T Consensus 324 rfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SST
T ss_pred CEEEEEcccCCcEEEEecCCC
Confidence 9887765 6899999999764
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.91 E-value=0.0029 Score=42.02 Aligned_cols=39 Identities=41% Similarity=0.609 Sum_probs=34.4
Q ss_pred CeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE
Q 002511 89 MDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 89 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 127 (914)
++....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
No 393
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.013 Score=67.41 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCcEEEEeCCCCcee--EEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCCCCEE
Q 002511 26 SEPWILASLYSGTVCIWNYQSQTMA--KSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIR 103 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~ 103 (914)
.+.+++.|++.|.|...|.... .- ..-..-.++|++++|+.+|..++.|-.+|.|.+||..+++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3567889998999999886442 22 11222457999999999999999999999999999999999988876665544
Q ss_pred E---EEEeCCCCEEEEEEcCCeEEEEEC
Q 002511 104 C---VAVHPTLPYVLSSSDDMLIKLWDW 128 (914)
Q Consensus 104 ~---~~~s~~~~~l~~~~~dg~i~iwd~ 128 (914)
. +.+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 444556667777777775 5543
No 394
>PRK13684 Ycf48-like protein; Provisional
Probab=96.90 E-value=0.8 Score=48.80 Aligned_cols=225 Identities=11% Similarity=0.069 Sum_probs=109.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEEC-CCCeeeEEEe----cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNY-NTMDKVKVFE----AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKG 131 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~-~t~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 131 (914)
..++.++.|.....-+++|. +|.| |.. +.|+.=.... .....+.++.|.++ ..+++ +..|.|..- -+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666676664 4544 332 2222211111 12234677888654 33443 455544332 2333
Q ss_pred ceEEEEeec--Cc-ccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcCEEEEEEc
Q 002511 132 WMCTQIFEG--HS-HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKPYLITGSD 207 (914)
Q Consensus 132 ~~~~~~~~~--~~-~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~ 207 (914)
......... .. .........+ +. +..++..|.|..-+ +.++.-..+ ......+..+.+.+++. ++..+.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~--~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~---~v~~g~ 191 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP--GT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK---YVAVSS 191 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC--Cc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe---EEEEeC
Confidence 222222111 11 1122222332 22 33444555554332 233322222 22345678888887653 445555
Q ss_pred CCeEEE-EECCCCceEEE-ecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec----CCccEEEEEEec
Q 002511 208 DHTAKV-WDYQTKSCVQT-LEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMK 281 (914)
Q Consensus 208 dg~i~i-wd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~ 281 (914)
.|.+.. +| ..++.-.. .......+.++.+.++++.++++ ..|.+++=....|..-..... ....+.++.+.+
T Consensus 192 ~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~ 269 (334)
T PRK13684 192 RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT 269 (334)
T ss_pred CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC
Confidence 665543 22 22222222 22344678999999999877765 467765433344433222221 123577888988
Q ss_pred CCCEEEEEecCCeEEE
Q 002511 282 SSRRIVIGYDEGTIMV 297 (914)
Q Consensus 282 ~~~~l~~~~~dg~i~i 297 (914)
++..++ ++.+|.+..
T Consensus 270 ~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 270 PGEIWA-GGGNGTLLV 284 (334)
T ss_pred CCCEEE-EcCCCeEEE
Confidence 776554 445565554
No 395
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.52 Score=46.48 Aligned_cols=230 Identities=14% Similarity=0.154 Sum_probs=132.6
Q ss_pred CeEEEEEecCCCE-EEEEECCC-EEEEEECCCCeeeEEEecCCCC--EEEEEEeCCCCEEEEEEcC-----CeEEEEECC
Q 002511 59 PVRSAKFVARKQW-VVAGADDM-FIRVYNYNTMDKVKVFEAHTDY--IRCVAVHPTLPYVLSSSDD-----MLIKLWDWE 129 (914)
Q Consensus 59 ~v~~~~~s~~~~~-l~~g~~dg-~i~vwd~~t~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~ 129 (914)
....++|+|.... ++.+-.-| ...++|.++.+...++....+. .-.-.|||||.+|...-.| |.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 3455777775443 44444444 4568898888776666433322 2335799999988876443 889999999
Q ss_pred CCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEE--------------------EEECCCCCCcEE--Ee--cCC
Q 002511 130 KGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIK--------------------IWNLGSPDPNFT--LD--AHQ 185 (914)
Q Consensus 130 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~--------------------vwd~~~~~~~~~--~~--~~~ 185 (914)
.+....-.+..|.-....+.|.+ |+.+++.+. |-|. +.|..++..+.+ +. .+.
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred cccceecccccCCcCcceeEEec-CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 77566666777766677888998 888888765 3333 333333332221 11 223
Q ss_pred CCeeEEEEeeCCCcCEEEEEEc-CCe-----EEEEECCCCceEEEecC-------cccceEEEEEeCCCCEEEEEE-CCC
Q 002511 186 KGVNCVDYFTGGDKPYLITGSD-DHT-----AKVWDYQTKSCVQTLEG-------HTHNVSAVCFHPELPIIITGS-EDG 251 (914)
Q Consensus 186 ~~v~~~~~~~~~~~~~l~~~~~-dg~-----i~iwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~-~dg 251 (914)
-.+..++.-+++. +..|+. .|. -.+=-...++.+.-+.. ....|-+|+.+.+..+++..+ ..+
T Consensus 226 lSiRHld~g~dgt---vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 226 LSIRHLDIGRDGT---VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred cceeeeeeCCCCc---EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 3455555555543 333332 110 00111122333333321 234577888887666666555 445
Q ss_pred eEEEEeCCCceeEEEeecCCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 252 TVRIWHATTYRLENTLNYGLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 252 ~v~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
...+||..+|..+..-... ....+ -+...-+++.+.+|.+.+.
T Consensus 303 ~~vi~da~tG~vv~~a~l~--daaGv--a~~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 303 RAVIWDAATGAVVSEAALP--DAAGV--AAAKGGFAVSSGQGRIIFY 345 (366)
T ss_pred eEEEEEcCCCcEEeccccc--ccccc--eeccCceEEecCCceEEec
Confidence 6789999999877654332 12222 2344457777778888764
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.88 E-value=0.91 Score=49.17 Aligned_cols=271 Identities=13% Similarity=0.148 Sum_probs=144.6
Q ss_pred CCEEEEEecCCcEEEEeCCCCcee---EEee-ecCCCeEEEEEec-----CCCEEEEEECCCEEEEEECCC--Ce-----
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMA---KSFE-VTELPVRSAKFVA-----RKQWVVAGADDMFIRVYNYNT--MD----- 90 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~---~~~~-~~~~~v~~~~~s~-----~~~~l~~g~~dg~i~vwd~~t--~~----- 90 (914)
...|++|+.+|.++||+...+... ..++ ....||..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 358999999999999997544311 1112 1456777776532 2234555 4456788887731 11
Q ss_pred --eeEEEecCC--CCEEEEEEeC----C-CCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 91 --KVKVFEAHT--DYIRCVAVHP----T-LPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 91 --~~~~~~~~~--~~i~~~~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
.+..+..|. .....+++-| . ..+|++=+-||.+.+++-+.- .....+.. .--...+.|.| ..+.|+++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-~f~~~lp~-~llPgPl~Y~~-~tDsfvt~ 192 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-AFSRFLPD-FLLPGPLCYCP-RTDSFVTA 192 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-EEEEEcCC-CCCCcCeEEee-cCCEEEEe
Confidence 122222232 1223333333 1 246788899999999997764 33344333 22234567777 77889999
Q ss_pred eCCCcEEEEECCC--------------------CC---CcEEEecCCCCeeEEEEeeC-CCcCEEEEEEcCCeEEEEECC
Q 002511 162 SLDRTIKIWNLGS--------------------PD---PNFTLDAHQKGVNCVDYFTG-GDKPYLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 162 ~~dg~i~vwd~~~--------------------~~---~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 217 (914)
+.+..|..|.... ++ +..++.. ...+..+..... +....+++-+ ..++.+.+-
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~- 269 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD- 269 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-
Confidence 9888998886421 00 1112221 122233333222 1222344443 345666654
Q ss_pred CCceEEEecCcccceEEEEEe----CCC---CEEEEEECCCeEEEEeCCCceeEEEeecCCccE--EEEEEecCCCEEEE
Q 002511 218 TKSCVQTLEGHTHNVSAVCFH----PEL---PIIITGSEDGTVRIWHATTYRLENTLNYGLERV--WAIGYMKSSRRIVI 288 (914)
Q Consensus 218 ~~~~~~~~~~~~~~v~~i~~~----~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~~ 288 (914)
+|......+-...+.....+. ..+ ..+++++.++++.||.- .++.+.-.....+| .-..+..-...|++
T Consensus 270 ~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 270 NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 354433333222222222121 122 24888899999999963 34555444443333 22223334567888
Q ss_pred EecCCeEEE-EcCCCccee
Q 002511 289 GYDEGTIMV-KIGREEPVA 306 (914)
Q Consensus 289 ~~~dg~i~i-~~~~~~~~~ 306 (914)
-+++|.+.+ ++|.+++..
T Consensus 348 Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 348 LSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred EcCCCcEEEEEeCCCCccc
Confidence 888999888 556665443
No 397
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.87 E-value=0.003 Score=41.96 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=34.1
Q ss_pred CceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE
Q 002511 47 QTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN 85 (914)
Q Consensus 47 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd 85 (914)
++....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566778889999999999999999999999999996
No 398
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.81 E-value=0.029 Score=64.92 Aligned_cols=135 Identities=12% Similarity=0.168 Sum_probs=92.6
Q ss_pred cCCeEEEEECCCCceEEEEeecCccc-EEEEEEcc----CCCCEEEEEeCCCcEEEEECCCCC-CcEEEe----cCCCCe
Q 002511 119 DDMLIKLWDWEKGWMCTQIFEGHSHY-VMQVTFNP----KDTNTFASASLDRTIKIWNLGSPD-PNFTLD----AHQKGV 188 (914)
Q Consensus 119 ~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~p----~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~----~~~~~v 188 (914)
....|+-.|++.| +++..+..+... |..++-.. -.+...++|-.+..+..||.+-.. .+..-. ......
T Consensus 502 ~~~~ly~mDLe~G-KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERG-KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCC-cEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 4577888999998 666666665533 55544221 123456777788999999998643 111111 223445
Q ss_pred eEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeC
Q 002511 189 NCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (914)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (914)
.|++-+.+| +|++|+.+|.||+||--..+....+.+...+|..|..+.||++|++.+ +..|.+++.
T Consensus 581 s~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 666655555 799999999999999543334455667788999999999999988777 447878774
No 399
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0086 Score=68.11 Aligned_cols=114 Identities=22% Similarity=0.202 Sum_probs=87.2
Q ss_pred ccCCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcch---hHHHHHhcCCHHH---------------
Q 002511 651 QLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSG---LLLLYSSLGDAEG--------------- 712 (914)
Q Consensus 651 ~l~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~---l~~l~~~~g~~~~--------------- 712 (914)
..+.+|.|.++|.+.+.|..|.+||.+-++.+.+..|++.|.++.|... +..+....|..+.
T Consensus 1087 ~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 4689999999999999999999999999999999999999999986542 2222233333332
Q ss_pred ------------------------------HHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhc
Q 002511 713 ------------------------------ISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY 762 (914)
Q Consensus 713 ------------------------------~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~ 762 (914)
+..+...+..++++..|..+|....++.+-.-.++..|.+.-|+.-||+-
T Consensus 1167 ~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1167 YIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred cchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 23344445666777777778877788888888888888888888888875
Q ss_pred CC
Q 002511 763 LP 764 (914)
Q Consensus 763 ~~ 764 (914)
..
T Consensus 1247 ns 1248 (1666)
T KOG0985|consen 1247 NS 1248 (1666)
T ss_pred cc
Confidence 43
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.0016 Score=61.54 Aligned_cols=141 Identities=10% Similarity=0.084 Sum_probs=78.3
Q ss_pred EEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcE-EEecCCCCeeEEE
Q 002511 114 VLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF-TLDAHQKGVNCVD 192 (914)
Q Consensus 114 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~ 192 (914)
+...+.||.|.-++++......+.-.-+. +..--+..+..+++|+.+|.|.+|......... ........|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhh----cceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44556678887777765322211111111 111112246789999999999999876322111 1112222333322
Q ss_pred EeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcc-cceEEEEEeCCCCEEEEE--ECCCeEEEEeCC
Q 002511 193 YFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-HNVSAVCFHPELPIIITG--SEDGTVRIWHAT 259 (914)
Q Consensus 193 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~--~~dg~v~iwd~~ 259 (914)
-. .....+..+++.+|.|+.|+..-.+.+-....|. .++.....+..++++... |.|..++.|++.
T Consensus 109 p~-~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PN-GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cc-ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11 1122378899999999999998877776666665 444444444444455554 555555555554
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.77 E-value=0.11 Score=59.48 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=118.4
Q ss_pred cCCCCEEEEEecC------CcEEEEeCCCCceeEEeeec-CCCeEEEEEecCCCEEEEEECC------CEEEEEECCCCe
Q 002511 24 HPSEPWILASLYS------GTVCIWNYQSQTMAKSFEVT-ELPVRSAKFVARKQWVVAGADD------MFIRVYNYNTMD 90 (914)
Q Consensus 24 sp~~~~la~~~~~------g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~d------g~i~vwd~~t~~ 90 (914)
+..+..+++|+.. ..|..||..++......... ...-.+++.. ++...++|+.+ ..+..||..+.+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345667777776 35888998887544332222 2223334443 55778888888 367788888776
Q ss_pred eeEEEecCCCCEEEEEEeCCCCEEEEEEcCCe-----EEEEECCCC-ceEEEEeecCcccEEEEEEccCCCCEEEEEeCC
Q 002511 91 KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML-----IKLWDWEKG-WMCTQIFEGHSHYVMQVTFNPKDTNTFASASLD 164 (914)
Q Consensus 91 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~d 164 (914)
....-.-.......-.-.-+|...++|+.||. |-.||..+. |...............+.+ ++.+.++|+.+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~ 437 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGD 437 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcC
Confidence 54422111111111112225777788888854 777887765 2222212111111222222 57888888865
Q ss_pred C------cEEEEECCCCCCcEE--EecCCCCeeEEEEeeCCCcCEEEEEEcCC-----eEEEEECCCCceEEEecCcccc
Q 002511 165 R------TIKIWNLGSPDPNFT--LDAHQKGVNCVDYFTGGDKPYLITGSDDH-----TAKVWDYQTKSCVQTLEGHTHN 231 (914)
Q Consensus 165 g------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~ 231 (914)
+ ++..||..+++-... +....... .++.. ++. +.++|+.++ +|..||..+.+-... .....+
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~--iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~ 512 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGK--IYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSP 512 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCE--EEEECCccCCCccceEEEEcCCCCceeEc-ccCccc
Confidence 4 467888776543221 11111111 22222 232 677777665 377788776554322 111122
Q ss_pred eEEEE-EeCCCCEEEEEECCC-----eEEEEeCCCce
Q 002511 232 VSAVC-FHPELPIIITGSEDG-----TVRIWHATTYR 262 (914)
Q Consensus 232 v~~i~-~~~~~~~l~~~~~dg-----~v~iwd~~~~~ 262 (914)
...+. ..-++.+.++|+.|| +|..||..+.+
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 22221 122456777788775 35566655433
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.69 E-value=0.62 Score=44.54 Aligned_cols=207 Identities=11% Similarity=0.114 Sum_probs=114.0
Q ss_pred CEEEEEECCCEEEEEECCCCeeeEE-EecCCCCEEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc-eEEEE-ee----
Q 002511 70 QWVVAGADDMFIRVYNYNTMDKVKV-FEAHTDYIRCVAVHPTL---PYVLSSSDDMLIKLWDWEKGW-MCTQI-FE---- 139 (914)
Q Consensus 70 ~~l~~g~~dg~i~vwd~~t~~~~~~-~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~-~~---- 139 (914)
.++.+--..|.|.-||+.+.+..+. +.+. +..++.+--.+ .+.+.++..-.|.-||-.... ..... ++
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 3444444567777788876443322 2322 23333333222 233333333334445522210 11111 11
Q ss_pred cCcccEEEEEEccCCCCEEEEEeC---------CCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 140 GHSHYVMQVTFNPKDTNTFASASL---------DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
....+......+| ++++++-.-. .|.++.|-... .+..+...-.--+.++|+.+... +.++-+.+-.
T Consensus 106 ~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~-fY~iDsln~~ 181 (310)
T KOG4499|consen 106 RKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKK-FYYIDSLNYE 181 (310)
T ss_pred HHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcE-EEEEccCceE
Confidence 1133455566778 6766332211 24455554322 22222233334467888866553 6666677778
Q ss_pred EEEEE--CCCCc-----eEEEecC---ccc-ceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCCccEEEEEE
Q 002511 211 AKVWD--YQTKS-----CVQTLEG---HTH-NVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGY 279 (914)
Q Consensus 211 i~iwd--~~~~~-----~~~~~~~---~~~-~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~i~~ 279 (914)
|.-|| ..+|. .+..++. ... .--.+++..+|.+.+++-..|+|...|..+|+.+.++..+..++++++|
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 87787 44443 2333321 111 1234566778888888888999999999999999999999999999999
Q ss_pred ecC
Q 002511 280 MKS 282 (914)
Q Consensus 280 ~~~ 282 (914)
--.
T Consensus 262 gGk 264 (310)
T KOG4499|consen 262 GGK 264 (310)
T ss_pred cCC
Confidence 643
No 403
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.67 E-value=1.4 Score=48.31 Aligned_cols=150 Identities=10% Similarity=0.176 Sum_probs=86.5
Q ss_pred CCeEEEEEecCCCEEE-EEE--CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCC----CCEEEEEEcCCeEEEEECCC
Q 002511 58 LPVRSAKFVARKQWVV-AGA--DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT----LPYVLSSSDDMLIKLWDWEK 130 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~-~g~--~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~iwd~~~ 130 (914)
.|+..++|. ||+.++ +.- .+|.+++=|. +.+.. -..|..+.|.|- -+.++.......|.+|.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899996 555444 332 2343333322 22333 345889999985 34566677778999998762
Q ss_pred C------ceEEEEeec---CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEE-ecCCCCeeEEEEeeCCCcC
Q 002511 131 G------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTL-DAHQKGVNCVDYFTGGDKP 200 (914)
Q Consensus 131 ~------~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 200 (914)
. +...++..- ..---..+.|+| ....|++-.....-.+++++........ -...+-|.|.+|.++|++
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R- 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR- 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE-
Confidence 1 122222111 111124578999 5666666555444445555443322222 245678999999999986
Q ss_pred EEEEEEcCCeEEEEECC
Q 002511 201 YLITGSDDHTAKVWDYQ 217 (914)
Q Consensus 201 ~l~~~~~dg~i~iwd~~ 217 (914)
++++.++.=.-++||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 44444445567889854
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.67 E-value=1.3 Score=47.99 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=87.1
Q ss_pred CCEEEEEEcCCeEEEEECCCCc-eE--EEEeecCcccEEEEEEc---cCCC-CEEEEEeCCCcEEEEECCCC--C-----
Q 002511 111 LPYVLSSSDDMLIKLWDWEKGW-MC--TQIFEGHSHYVMQVTFN---PKDT-NTFASASLDRTIKIWNLGSP--D----- 176 (914)
Q Consensus 111 ~~~l~~~~~dg~i~iwd~~~~~-~~--~~~~~~~~~~i~~~~~~---p~~~-~~l~~~~~dg~i~vwd~~~~--~----- 176 (914)
...|++|+..|.++||+...+. .. ...-..-..+|..+..- +... +.|++ -.-+.+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 3589999999999999986542 11 11112234567777643 2222 34444 45677888887321 1
Q ss_pred --CcEEEecC--CCCeeEEEEeeCCC---cCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEEC
Q 002511 177 --PNFTLDAH--QKGVNCVDYFTGGD---KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSE 249 (914)
Q Consensus 177 --~~~~~~~~--~~~v~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 249 (914)
.+..+..| ......+++-|-|. ..++++-+.||.+.+|+-+.-.....+.. .--...+++.+....+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11112222 22334455545432 35899999999999999654332333332 222235788888888999998
Q ss_pred CCeEEEEeC
Q 002511 250 DGTVRIWHA 258 (914)
Q Consensus 250 dg~v~iwd~ 258 (914)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888864
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.66 E-value=0.63 Score=54.89 Aligned_cols=230 Identities=10% Similarity=0.053 Sum_probs=123.5
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEeeecCC--------CeEEEEEec----------------CCCEEEEEECCCEEE
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFEVTEL--------PVRSAKFVA----------------RKQWVVAGADDMFIR 82 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~s~----------------~~~~l~~g~~dg~i~ 82 (914)
+..|.+++.++.|.-.|..+|+.+-.+..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777889999999999998887764321 122233321 344788999999999
Q ss_pred EEECCCCeeeEEEecCCCCEE-------------EEEEeC--CCCEEEEEEc----------CCeEEEEECCCCceEEEE
Q 002511 83 VYNYNTMDKVKVFEAHTDYIR-------------CVAVHP--TLPYVLSSSD----------DMLIKLWDWEKGWMCTQI 137 (914)
Q Consensus 83 vwd~~t~~~~~~~~~~~~~i~-------------~~~~s~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 137 (914)
-.|.+||+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++..=..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887642 11110 111112 1335666643 688999999999443333
Q ss_pred eecCcccEEEEEEccCCCCEEEEEeCCC-cEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEEC
Q 002511 138 FEGHSHYVMQVTFNPKDTNTFASASLDR-TIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDY 216 (914)
Q Consensus 138 ~~~~~~~i~~~~~~p~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 216 (914)
..+.... ... .+ .+.....++.+. ....+|...+.... -.+.. +..+..... ........+.|.-.|.
T Consensus 353 ~~g~p~~-~~~--~~-~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~----~pd~~g~~r--~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 353 DPGNPDP-TAP--PA-PGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQ----TPDQWGGDR--TPADEKYSSSLVALDA 421 (764)
T ss_pred ecCCCCc-ccC--CC-CCCEeccCCCCccCceEEcCCCCeEEE-eCCCc----cccccCCcc--ccCcccccceEEEEeC
Confidence 2221111 100 01 222222222111 22233332221111 00110 011100000 0001112456777888
Q ss_pred CCCceEEEecCcccceE---------EEEEeC-CCC---EEEEEECCCeEEEEeCCCceeEEEee
Q 002511 217 QTKSCVQTLEGHTHNVS---------AVCFHP-ELP---IIITGSEDGTVRIWHATTYRLENTLN 268 (914)
Q Consensus 217 ~~~~~~~~~~~~~~~v~---------~i~~~~-~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~ 268 (914)
++|+....++...+.++ -+.+.. +|+ .++.++.+|.++++|..+|+.+....
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 88888777764222111 122322 553 78899999999999999999876544
No 406
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.65 E-value=0.0032 Score=65.70 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=68.3
Q ss_pred eeeecccCCHHHHHHHHHHc-------CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCH
Q 002511 646 FELAIQLGRLEVAQEIATEV-------QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDA 710 (914)
Q Consensus 646 f~~~l~l~~~~~A~~~a~~~-------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~g~~ 710 (914)
..++...++++++.++...+ .++..|..+|..+.+.|+.+.|+++|.++-... .+..++...|+.
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence 36677889999988887652 356789999999999999999999999874221 233334445665
Q ss_pred HHHHHHHHHHHHc----CCc-hHHHHHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcChhh
Q 002511 711 EGISKLASLAKEQ----GKN-NVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKA 785 (914)
Q Consensus 711 ~~~~~~a~~a~~~----~~~-~~a~~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~ 785 (914)
+.+..+.+..... ... ..-+.+++.+|++++|+.+|.+.- ...|
T Consensus 197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----------~~~p--------------------- 245 (280)
T PF13429_consen 197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL----------KLNP--------------------- 245 (280)
T ss_dssp HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH----------HHST---------------------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc----------cccc---------------------
Confidence 5433333322222 111 112233444455555555544320 1111
Q ss_pred hhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCC
Q 002511 786 AESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPA 822 (914)
Q Consensus 786 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 822 (914)
..|.....|+.++...|.+++|...+.+|
T Consensus 246 --------~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 --------DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --------T-HHHHHHHHHHHT---------------
T ss_pred --------ccccccccccccccccccccccccccccc
Confidence 33444556777778888888887776655
No 407
>PRK10115 protease 2; Provisional
Probab=96.64 E-value=2 Score=50.71 Aligned_cols=195 Identities=7% Similarity=-0.001 Sum_probs=101.6
Q ss_pred CeEEEEEecCCCEEEEEEC-----CCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC------CeEEEEE
Q 002511 59 PVRSAKFVARKQWVVAGAD-----DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD------MLIKLWD 127 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~-----dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iwd 127 (914)
.+..+.|||||++|+.+.+ ...|++.|+.+|+.+...-.... ..++|++|++.|+.+..+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677899999999987644 23688999988864332211121 469999999877655432 3678888
Q ss_pred CCCCc-eEEEEeecCcccEEEEEEccCCCCEEEEEeC---CCcEEEEECC--CCCCcEEEecCCCCeeEEEEeeCCCcCE
Q 002511 128 WEKGW-MCTQIFEGHSHYVMQVTFNPKDTNTFASASL---DRTIKIWNLG--SPDPNFTLDAHQKGVNCVDYFTGGDKPY 201 (914)
Q Consensus 128 ~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~---dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 201 (914)
+.++. .-..++........-..+.+.++..++..+. ++.+.+++.. .+.+...+ .+...+.. .+...++.-+
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEY-SLDHYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEE-EEEeCCCEEE
Confidence 88762 2223343332323322333436666555443 3568888843 33322222 22222221 1222233222
Q ss_pred EEEEEc--CCeEEEEECCCCceEEEecCc-c-cceEEEEEeCCCCEEEEEECCCeEEEEeC
Q 002511 202 LITGSD--DHTAKVWDYQTKSCVQTLEGH-T-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (914)
Q Consensus 202 l~~~~~--dg~i~iwd~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (914)
+.+-.. ...|...++.+......+-.+ . ..|..+.++.+ .++++...+|.-+++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEE
Confidence 222211 223444454421112223333 2 36788888743 46666666776555443
No 408
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.63 E-value=2.2 Score=50.03 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=61.3
Q ss_pred CCEEEEEecCCcEEEEeCCCCceeEEee---ecCCCeEEEEEecCC------CEEEEEECCCEEEEEECCCCeeeEEEe-
Q 002511 27 EPWILASLYSGTVCIWNYQSQTMAKSFE---VTELPVRSAKFVARK------QWVVAGADDMFIRVYNYNTMDKVKVFE- 96 (914)
Q Consensus 27 ~~~la~~~~~g~v~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~------~~l~~g~~dg~i~vwd~~t~~~~~~~~- 96 (914)
...++++.++|.+.-+..........+. .-+..|.|+++.+++ ++++.++.|+.++++.+.....+..+.
T Consensus 549 r~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 549 RRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSV 628 (1205)
T ss_pred ceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccc
Confidence 3446666666766555543322233332 235678999998864 679999999999999998666666553
Q ss_pred -cCCCCEEEEEEeC---CCC------EEEEEEcCCeEEEE
Q 002511 97 -AHTDYIRCVAVHP---TLP------YVLSSSDDMLIKLW 126 (914)
Q Consensus 97 -~~~~~i~~~~~s~---~~~------~l~~~~~dg~i~iw 126 (914)
+-+.++.++.+-+ ++. +|.+|-.+|.+.-.
T Consensus 629 q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 629 QGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3334444444432 332 45677777765544
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.59 E-value=0.56 Score=50.63 Aligned_cols=84 Identities=10% Similarity=0.119 Sum_probs=55.6
Q ss_pred cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCC-eeEEEEeeCCC---------------cCE-EEE
Q 002511 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG-VNCVDYFTGGD---------------KPY-LIT 204 (914)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~---------------~~~-l~~ 204 (914)
...+.+++.+| ++++.++...-|.|.++|+.++..++.+++.... +.-+.....+. ..+ ++-
T Consensus 307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34578899999 7888888888899999999998877776654432 11111111111 012 223
Q ss_pred EEcCCeEEEEECCCCceEEEec
Q 002511 205 GSDDHTAKVWDYQTKSCVQTLE 226 (914)
Q Consensus 205 ~~~dg~i~iwd~~~~~~~~~~~ 226 (914)
+-.-|.|.||++++|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 4457889999999888777665
No 410
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.27 Score=53.16 Aligned_cols=272 Identities=8% Similarity=-0.025 Sum_probs=144.3
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecC-CCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
..+|..+.+...|. +.+|+.+| +..||..+++..+.-.... .+|..+.-+-.|. |.+|+.+| |.+.+....+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence 35688888888775 66777777 6778888887666544332 5666666665664 77888877 6666655422211
Q ss_pred EE-ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCc--ccEEEEEEccCCCCEEEEEeCCCcEEEE
Q 002511 94 VF-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHS--HYVMQVTFNPKDTNTFASASLDRTIKIW 170 (914)
Q Consensus 94 ~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~l~~~~~dg~i~vw 170 (914)
.. .-....|..+.-..+| .+-.|+.+|..+.--.+.+ ........|. +.|.++..+ ....+.+++.+|.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~-Lq~~~~~~~l~~S~vnsL~~D--~dGsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQG-LQIPLSKMHLGVSTVNSLWLD--TDGSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCC-ccccccccCCccccccceeec--cCCCEeeeccCceEEEe
Confidence 11 1123445555444444 5777777775433322222 2222222222 233444333 34457777777766554
Q ss_pred ECCCCCCcEEEecCCCC-eeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEec-CcccceEEEEEeCCCCEEEEEE
Q 002511 171 NLGSPDPNFTLDAHQKG-VNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLE-GHTHNVSAVCFHPELPIIITGS 248 (914)
Q Consensus 171 d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~ 248 (914)
+-. ......+....+. +...+.+|.....-+--..+-|.+.+-+-.+|..+.+.. .....|+.+++..+| .+-.|+
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs 393 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS 393 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe
Confidence 321 1111122222121 112222221111112223333445555555566554432 233567777777755 455666
Q ss_pred CCCeEEEEeCCC-ceeEEEee-cCCccEEEEEEecCCCEEEEEecCCeEEE
Q 002511 249 EDGTVRIWHATT-YRLENTLN-YGLERVWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 249 ~dg~v~iwd~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
...-+..|+..+ +-...... ...++|..+.-.|+++ |-+|+.+|.+..
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 664566677666 32322222 2346788888888887 888988888776
No 411
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.28 Score=56.40 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=94.5
Q ss_pred EEEEEECCCCeeeEEEecCCCCE-EEEEEeCCCCEEEEEEcC------CeEEEEECCCCceEEEE--eecCcccEEEEEE
Q 002511 80 FIRVYNYNTMDKVKVFEAHTDYI-RCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQI--FEGHSHYVMQVTF 150 (914)
Q Consensus 80 ~i~vwd~~t~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~ 150 (914)
.+..||..+++....-.-..... .+++. -++...++|+.+ ..+..||..++ ..... +....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhhce-eEEE
Confidence 56778887765433211111111 12222 255666677643 34778888776 22221 11111111 2222
Q ss_pred ccCCCCEEEEEeCCC-----cEEEEECCCCCCcEEEecCCCCee--EEEEeeCCCcCEEEEEEcC---------------
Q 002511 151 NPKDTNTFASASLDR-----TIKIWNLGSPDPNFTLDAHQKGVN--CVDYFTGGDKPYLITGSDD--------------- 208 (914)
Q Consensus 151 ~p~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~l~~~~~d--------------- 208 (914)
. ++.+.+.|+.++ ++..||..+.+-.. ......+.. +++ .-++. +.+.|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~-~~~g~--IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMC-VLDQY--IYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEE-EECCE--EEEEeCCCccccccccccccccc
Confidence 2 577888888764 47889987653221 111111111 111 12332 55666544
Q ss_pred --------CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECC------CeEEEEeCCC-ce--eEEEeecCC
Q 002511 209 --------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSED------GTVRIWHATT-YR--LENTLNYGL 271 (914)
Q Consensus 209 --------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------g~v~iwd~~~-~~--~~~~~~~~~ 271 (914)
..+..||..+.+-...-.-.......-...-++++.+.||.+ ..+..||..+ .+ .+..+....
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 247778877654321111111111111222345666777654 2467888876 33 333333222
Q ss_pred ccEEEEEEecCCCEEEEEecCC
Q 002511 272 ERVWAIGYMKSSRRIVIGYDEG 293 (914)
Q Consensus 272 ~~v~~i~~~~~~~~l~~~~~dg 293 (914)
..... ..-+++..++|+.+|
T Consensus 504 ~~~~~--~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHT--ILHDNTIMMLHCYES 523 (557)
T ss_pred cccee--EEECCEEEEEeeecc
Confidence 22222 223667777777766
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.0034 Score=59.31 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=62.4
Q ss_pred EEEEECCCEEEEEECCCCeeeE-EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEE
Q 002511 72 VVAGADDMFIRVYNYNTMDKVK-VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTF 150 (914)
Q Consensus 72 l~~g~~dg~i~vwd~~t~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 150 (914)
+..-+.+|.|+-+++..-+... .-.-|...-.-+ .-+..+++|+.+|.|.+|++.........+......|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3344567777766664322111 111122221112 234568999999999999987332222222222333444433
Q ss_pred ccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCC
Q 002511 151 NPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQ 185 (914)
Q Consensus 151 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 185 (914)
.-+++++..+++.||.|+.|++.-.+.+-....|.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~ 144 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN 144 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeecccc
Confidence 33466789999999999999987666554444444
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.44 E-value=0.19 Score=57.51 Aligned_cols=222 Identities=14% Similarity=0.099 Sum_probs=113.7
Q ss_pred cCCCEEEEEECC------CEEEEEECCCCeeeEEEec-CCCCEEEEEEeCCCCEEEEEEcC------CeEEEEECCCCce
Q 002511 67 ARKQWVVAGADD------MFIRVYNYNTMDKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWM 133 (914)
Q Consensus 67 ~~~~~l~~g~~d------g~i~vwd~~t~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~ 133 (914)
..+..+++|+.+ ..+..||..++.......- +...-.+++.. ++...++|+.| .++..||..++ .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~-~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN-Q 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC-c
Confidence 345667777766 3678889887755443321 22223344444 45677788887 35778888766 2
Q ss_pred EEEE--eecCcccEEEEEEccCCCCEEEEEeCCCc-----EEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEE
Q 002511 134 CTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRT-----IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGS 206 (914)
Q Consensus 134 ~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 206 (914)
.... +....... +++.. ++.+.++|+.||. +-.||..+.+-...-. ............-+.. +.++|+
T Consensus 361 W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~-iYi~GG 435 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGK-LYIIGG 435 (571)
T ss_pred eeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCE-EEEEcC
Confidence 3321 11111111 12222 6888999999864 7778876654322111 1112222222222222 666666
Q ss_pred cC------CeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCe-----EEEEeCCCceeEEE--eecCCcc
Q 002511 207 DD------HTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT-----VRIWHATTYRLENT--LNYGLER 273 (914)
Q Consensus 207 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~-----v~iwd~~~~~~~~~--~~~~~~~ 273 (914)
.+ .++..||..++.....-.-.......-.-.-++.+.+.||.|+. |..||..+.+-... .......
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 44 35778888776543221111111111122235667888887763 67788776543222 2222121
Q ss_pred EEEEEEecCCCEEEEEecCCeEEE
Q 002511 274 VWAIGYMKSSRRIVIGYDEGTIMV 297 (914)
Q Consensus 274 v~~i~~~~~~~~l~~~~~dg~i~i 297 (914)
+.. ..-++...++|+.+|.-.+
T Consensus 516 ~g~--~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 516 VGV--VVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred ccE--EEECCEEEEEecccCcccc
Confidence 211 2235666777777766554
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.40 E-value=1.2 Score=47.47 Aligned_cols=234 Identities=13% Similarity=0.154 Sum_probs=118.1
Q ss_pred CEEEEEEcCCCCEEEEEecCCcEEEEeCCCCce---eEEee----ecCCCeEEEEEecC---CCEEEEEEC-C-------
Q 002511 17 RVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM---AKSFE----VTELPVRSAKFVAR---KQWVVAGAD-D------- 78 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~---~~~~~----~~~~~v~~~~~s~~---~~~l~~g~~-d------- 78 (914)
..++|+|.|||..+++ ...|.|++++ ..+.. +..+. ........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4689999999976554 6699999999 55544 22221 23456899999995 234443333 1
Q ss_pred -CEEEEEECCCC-------eee-EEEec---CCCCEEEEEEeCCCCEEEEEEcC-------------CeEEEEECCCCc-
Q 002511 79 -MFIRVYNYNTM-------DKV-KVFEA---HTDYIRCVAVHPTLPYVLSSSDD-------------MLIKLWDWEKGW- 132 (914)
Q Consensus 79 -g~i~vwd~~t~-------~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d-------------g~i~iwd~~~~~- 132 (914)
..|.-|....+ +.+ ..+.. ....-..|.|.|||.+.++.+.. |.|.-.+.+...
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24555554433 111 12222 23345779999999655554432 333333433210
Q ss_pred -----------eEEEEeecCcccEEEEEEccCCCCEEEEEe-CCCcEEEEECCCC-------------------------
Q 002511 133 -----------MCTQIFEGHSHYVMQVTFNPKDTNTFASAS-LDRTIKIWNLGSP------------------------- 175 (914)
Q Consensus 133 -----------~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~------------------------- 175 (914)
.....-.++.. ...++|+|..+.++++=. .++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00011122332 467899994354444321 1221122111111
Q ss_pred ----CCcEEEecCCCCeeEEEEeeCCC-----cCEEEEEEcCCeEEEEECCCCceEE---E-ecCcccceEEEEEeCCCC
Q 002511 176 ----DPNFTLDAHQKGVNCVDYFTGGD-----KPYLITGSDDHTAKVWDYQTKSCVQ---T-LEGHTHNVSAVCFHPELP 242 (914)
Q Consensus 176 ----~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~i~~~~~~~ 242 (914)
.+...+..| ..+..+.|..... +.++++....+.|....+..+..+. . +......+..+++.|||.
T Consensus 240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 122333333 4556677765432 2255555556778887776443322 1 233444789999999998
Q ss_pred EEEEEECCCeEE
Q 002511 243 IIITGSEDGTVR 254 (914)
Q Consensus 243 ~l~~~~~dg~v~ 254 (914)
+.++...+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877788764
No 415
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.38 E-value=0.00072 Score=70.50 Aligned_cols=278 Identities=9% Similarity=0.085 Sum_probs=167.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEE-ECCCEEEEEECCCCeee
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAG-ADDMFIRVYNYNTMDKV 92 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~vwd~~t~~~~ 92 (914)
|-.......|-|.+.-++.++.+..|..|| +.++...... ..+....++|..++..+++. -..+.+.+|++++...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence 444556677888888799999999999999 4555444433 44556778898888776544 4578999999976322
Q ss_pred EEEe-cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc-----
Q 002511 93 KVFE-AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT----- 166 (914)
Q Consensus 93 ~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~----- 166 (914)
..+. +....-.-+.|++..+.++.+...|.+.|++..+. +.......|..++++++|.+ .++.+.++.|..
T Consensus 110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTT 186 (615)
T ss_pred HHHhccCcchHHHHhhccCCccccccccccceEEEeccch-hhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhh
Confidence 2221 11222233789999999999999999999998876 33333444889999999998 445555554433
Q ss_pred -----EEEEECCCC-----------------------------------------CCcEEEecCCCCeeEEEEeeCCCcC
Q 002511 167 -----IKIWNLGSP-----------------------------------------DPNFTLDAHQKGVNCVDYFTGGDKP 200 (914)
Q Consensus 167 -----i~vwd~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 200 (914)
+..+..+.. ..-..++...+.+.|+.|..+|
T Consensus 187 qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg--- 263 (615)
T KOG2247|consen 187 QEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--- 263 (615)
T ss_pred hccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccceEeeecCCceeEEEEeccc---
Confidence 233322110 0011333444566777777776
Q ss_pred EEEEEEcCCeEEEEECCCCceEEEe---cCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeE--EEeecCCccEE
Q 002511 201 YLITGSDDHTAKVWDYQTKSCVQTL---EGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLE--NTLNYGLERVW 275 (914)
Q Consensus 201 ~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~v~ 275 (914)
+|..+.+-|.|..-+..+++....+ ..+.+.+.+++.|..-+..++.+ |..+++-|....... ..+........
T Consensus 264 ~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsqcvnkaftlg-dn~nkvRdl~el~e~y~n~L~eaek~lg 342 (615)
T KOG2247|consen 264 YILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQCVNKAFTLG-DNMNKVRDLDELTEVYMNTLIEAEKNLG 342 (615)
T ss_pred cccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3777777777777666665432221 13555666666555433333333 334444433211100 00111112233
Q ss_pred EEEEecCCCEEEEEecCCeEEEEcCC
Q 002511 276 AIGYMKSSRRIVIGYDEGTIMVKIGR 301 (914)
Q Consensus 276 ~i~~~~~~~~l~~~~~dg~i~i~~~~ 301 (914)
.+.|.-+|++++.++..|...+.+.+
T Consensus 343 e~~~t~dgqlyals~Q~g~l~~fLtK 368 (615)
T KOG2247|consen 343 EIEVTEDGQLYALSSQSGVLSIFLTK 368 (615)
T ss_pred ceeeeeccceeeehhccchHHHHHHh
Confidence 46677788888888888877765544
No 416
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.34 E-value=1.7 Score=46.38 Aligned_cols=211 Identities=15% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----CCcEEEec---C----CCCeeEEEEeeCCCcCEEEEEEc------CCeEEEEE
Q 002511 154 DTNTFASAS-LDRTIKIWNLGSP----DPNFTLDA---H----QKGVNCVDYFTGGDKPYLITGSD------DHTAKVWD 215 (914)
Q Consensus 154 ~~~~l~~~~-~dg~i~vwd~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~~~l~~~~~------dg~i~iwd 215 (914)
+.++|+..+ .++.|+|+|+.+. +..+.+.. + -.....+..-|+|+ +++++-. -|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~--imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR--IMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS----EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc--EEEEeccCCCCCCCCcEEEEc
Confidence 456676666 6788999998743 22233322 1 11223344445554 5666432 25688888
Q ss_pred CCCCceEEEecCcc---cceEEEEEeCCCCEEEEEEC--------------------CCeEEEEeCCCceeEEEeecCCc
Q 002511 216 YQTKSCVQTLEGHT---HNVSAVCFHPELPIIITGSE--------------------DGTVRIWHATTYRLENTLNYGLE 272 (914)
Q Consensus 216 ~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~~--------------------dg~v~iwd~~~~~~~~~~~~~~~ 272 (914)
-.+........... .--..+.|.|..+.++|... ..++.+||+.+.+.++++.....
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 87776666554322 23467888898888887542 35799999999999999987753
Q ss_pred c--EEEEEEecC--CCEEEEEec-CCeEEEEcCCCcceeEEcCCCcEEEEeeCcEEEEEeeecccceeccCCceeeeeee
Q 002511 273 R--VWAIGYMKS--SRRIVIGYD-EGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADYEVTDGERLPLAVK 347 (914)
Q Consensus 273 ~--v~~i~~~~~--~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (914)
. ...+.|..+ ..+-.+|+. .+.|..|-.. .+|. |....-+.+-.. -.++-.++.-++
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~--------~~g~--W~a~kVi~ip~~--------~v~~~~lp~ml~ 305 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD--------DDGE--WAAEKVIDIPAK--------KVEGWILPEMLK 305 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---------ETTE--EEEEEEEEE--E--------E--SS---GGGG
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEc--------CCCC--eeeeEEEECCCc--------ccCccccccccc
Confidence 3 445666544 444444332 3333332111 1122 221111111110 001111111112
Q ss_pred ecCCcccCCceEEECCCCCEEEEEc--CCcEEEEEeecc
Q 002511 348 ELGTCDLYPQSLKHNPNGRFVVVCG--DGEYIIYTALAW 384 (914)
Q Consensus 348 ~~~~~~~~~~~l~~s~~g~~lav~~--~~~~~i~~~~~~ 384 (914)
.++....-++.|.+|.|.++|-+++ .|.++.|++...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2233345678999999999998887 999999988754
No 417
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.32 E-value=1.3 Score=44.12 Aligned_cols=194 Identities=11% Similarity=0.038 Sum_probs=120.2
Q ss_pred eeeEEEec-CCCCEEEEEEeCCCCEEEEEEcCC--eEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCc
Q 002511 90 DKVKVFEA-HTDYIRCVAVHPTLPYVLSSSDDM--LIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRT 166 (914)
Q Consensus 90 ~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~ 166 (914)
+.+..+.. .......+.|..+|.++-+.+.-| .|+.+|+.++.......-...-.--.++.. ++.+....-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCe
Confidence 34455542 233566788877777777776655 799999999855444433333333344444 3556666667899
Q ss_pred EEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcc-----cceEEEEEeCCC
Q 002511 167 IKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHT-----HNVSAVCFHPEL 241 (914)
Q Consensus 167 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~ 241 (914)
..+||..+.+.+.++.-. +.-..++ .+++ .|+.......++++|..+.+....+.... ..+.-+.|. +|
T Consensus 112 ~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP-GEGWGLT--SDGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp EEEEETTTTEEEEEEE-S-SS--EEE--ECSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred EEEEccccceEEEEEecC-CcceEEE--cCCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 999999988887777533 3446666 3455 47766667889999998877766665332 235556676 56
Q ss_pred CEEEEEECCCeEEEEeCCCceeEEEeec---------------CCccEEEEEEecCCCEEEEEec
Q 002511 242 PIIITGSEDGTVRIWHATTYRLENTLNY---------------GLERVWAIGYMKSSRRIVIGYD 291 (914)
Q Consensus 242 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~~~~~ 291 (914)
.+.|=.-....|...|..+|+....+.. ...-...|++.|..+.+.+.+.
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5555555666888899999998765531 1245789999998877766554
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.31 E-value=0.83 Score=46.46 Aligned_cols=145 Identities=10% Similarity=-0.014 Sum_probs=88.0
Q ss_pred CEEEEEEcCCCCEEEEEe---cCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEE-CCCCeee
Q 002511 17 RVKSVDLHPSEPWILASL---YSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYN-YNTMDKV 92 (914)
Q Consensus 17 ~v~~~~~sp~~~~la~~~---~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd-~~t~~~~ 92 (914)
.+.+.++|++++.+|... ....+.++. .+....... ....+..-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 689999999999887755 233455554 333333322 223678889999987777666666666664 3333322
Q ss_pred E-EEec--CCCCEEEEEEeCCCCEEEEEE---cCCeEEEEECCC---C--ceE---EEEeecCcccEEEEEEccCCCCEE
Q 002511 93 K-VFEA--HTDYIRCVAVHPTLPYVLSSS---DDMLIKLWDWEK---G--WMC---TQIFEGHSHYVMQVTFNPKDTNTF 158 (914)
Q Consensus 93 ~-~~~~--~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~---~--~~~---~~~~~~~~~~i~~~~~~p~~~~~l 158 (914)
. .... -...|+.+.+||||.+++... .++.|.+--+.. + ... ..........+..+.|.+ ++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 1 1211 112899999999999988665 347777765431 1 011 112222345789999998 56665
Q ss_pred EEEeCCC
Q 002511 159 ASASLDR 165 (914)
Q Consensus 159 ~~~~~dg 165 (914)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 5555433
No 419
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.075 Score=56.60 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=99.3
Q ss_pred CCCEEE-EEECCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCE-------EEEEEcCCeEEEEECCCCce-EEEEe
Q 002511 68 RKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPY-------VLSSSDDMLIKLWDWEKGWM-CTQIF 138 (914)
Q Consensus 68 ~~~~l~-~g~~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~ 138 (914)
+.++|+ ++.....++-.|++.|+.+....-|.+ |+-+.+.|+.+. -+.|-.+..|.-||.+-... .....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344443 445556788889999999999887776 777888887542 34667788899999884322 22222
Q ss_pred ecCc----ccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEE
Q 002511 139 EGHS----HYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVW 214 (914)
Q Consensus 139 ~~~~----~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (914)
.+|. ....|.+-. ...++++||.+|.|++||--.......+++...+|..+..+.+|. .+.|..+..+.+.
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGK---wil~Tc~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGK---WILATCKTYLLLI 497 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCc---EEEEecccEEEEE
Confidence 2221 223444444 567899999999999999744444556678889999999999987 3444456677777
Q ss_pred ECC
Q 002511 215 DYQ 217 (914)
Q Consensus 215 d~~ 217 (914)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 653
No 420
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.21 E-value=0.036 Score=66.20 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=76.7
Q ss_pred eeecccCCHHHHHHHHHHcCC--hHHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002511 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~g~~~~~~~ 715 (914)
.++.+.|++++|.++.+.+.. ...|..|...+.+.|+++.|.+.|.++. -|..++..|...|+.+...+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 567788999999999988754 4579999999999999999999998774 23455666677777766666
Q ss_pred HHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHCC
Q 002511 716 LASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVESN 750 (914)
Q Consensus 716 ~a~~a~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~~ 750 (914)
+-+...+.|- ++.-..+|.+.|++++|.++|.++.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 6555555552 2344556677788888887766543
No 421
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.15 E-value=0.023 Score=66.72 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCcccc---e---eeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002511 620 NSVARFLESRGMIEEAIEVA-----TDPDYR---F---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~---f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (914)
..+..++...|.+++|+... .+|... + .+++.+|++++|.+..+.. .++..|..+|..+...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 44455666677777776543 244332 1 3456889999999887642 457899999999999999
Q ss_pred hhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002511 684 LEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 684 ~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~~a~~a~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
++.|+++|.++-... .+..++...|+.+......+.+....-. ..-+.++...|++++|++.|.+
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999885432 2334455566655544444444332211 2234455556666666666554
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.0016 Score=68.00 Aligned_cols=128 Identities=15% Similarity=0.002 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHH
Q 002511 669 SKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 669 ~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
..|+..+..|....+...|++ +||..||..++--+...-..++.+..-..++-.+-.||+|.+.+.+
T Consensus 4 ~~~~~~~~~a~~d~~~~~air-------------iyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le 70 (615)
T KOG2247|consen 4 KVIPCTLTKAQEDFKCVSAIR-------------IYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE 70 (615)
T ss_pred cchhhHHHhhhhhccchHHHH-------------HHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceecc
Confidence 579999999999999999999 6666666555555555556666665555666678889999999999
Q ss_pred CCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCccc
Q 002511 749 SNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAEDY 825 (914)
Q Consensus 749 ~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 825 (914)
.+++-+|+.|+++. . |...+. +|+.-. |..-|.+-.+|++++|.-|.+..+..+|++.-..
T Consensus 71 ~n~tg~aldm~wDk-e---------gdvlav-----lAek~~-piylwd~n~eytqqLE~gg~~s~sll~wsKg~~e 131 (615)
T KOG2247|consen 71 LNPTGKALDMAWDK-E---------GDVLAV-----LAEKTG-PIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPE 131 (615)
T ss_pred cCCchhHhhhhhcc-c---------cchhhh-----hhhcCC-CeeechhhhhhHHHHhccCcchHHHHhhccCCcc
Confidence 99999999999997 3 544444 555544 7888888889999999888888877666665443
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=96.08 E-value=2.5 Score=45.02 Aligned_cols=269 Identities=8% Similarity=-0.013 Sum_probs=132.1
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEee----ecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCe
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFE----VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMD 90 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~ 90 (914)
...+.+|+|.....-+++|. +|.|..=. +.|+.-+... ....++.++.|.++ ..+++| ..|.|.. ..+.|+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~-S~DgG~ 119 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLH-TTDGGK 119 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEE-ECCCCC
Confidence 55789999986666677764 55443321 2232222111 12335778888654 334444 4454332 222222
Q ss_pred eeEEEe---cCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEeCCCcE
Q 002511 91 KVKVFE---AHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTI 167 (914)
Q Consensus 91 ~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i 167 (914)
.-..+. ...+....+.....+. +..++..|.|..-+ +.+.............+..+.+.| ++..+ ..+..|.+
T Consensus 120 tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~-~g~~v-~~g~~G~i 195 (334)
T PRK13684 120 NWTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP-DGKYV-AVSSRGNF 195 (334)
T ss_pred CCeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC-CCeEE-EEeCCceE
Confidence 222211 1111122222222232 33344555554332 333333333334456788999998 55444 44556655
Q ss_pred EEEECCCCCCcE-EEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC----cccceEEEEEeCCCC
Q 002511 168 KIWNLGSPDPNF-TLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELP 242 (914)
Q Consensus 168 ~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~ 242 (914)
..-.-..++.-. ........++.+.+.+++. .++ .+..|.+++=....+..-..... ....+.++.+.|++.
T Consensus 196 ~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~--~~~-vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 196 YSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN--LWM-LARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred EEEcCCCCCeEEEeeCCCcccceeeeEcCCCC--EEE-EecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC
Confidence 432112222121 2223446778888888775 344 45567665423344443222221 123478899999887
Q ss_pred EEEEEECCCeEEEEeCCCceeEEEeec---CCccEEEEEEecCCCEEEEEecCCeEEEE
Q 002511 243 IIITGSEDGTVRIWHATTYRLENTLNY---GLERVWAIGYMKSSRRIVIGYDEGTIMVK 298 (914)
Q Consensus 243 ~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~dg~i~i~ 298 (914)
.+++| .+|.|. .....++.-..... -....+.+.+..+++.++ .+..|.|.-+
T Consensus 273 ~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 273 IWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred EEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 65554 567654 34444443333321 123577788776666544 5556666554
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.56 Score=52.63 Aligned_cols=201 Identities=8% Similarity=0.047 Sum_probs=105.7
Q ss_pred CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE--EEeecCcccEEEEEEccCC
Q 002511 77 DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT--QIFEGHSHYVMQVTFNPKD 154 (914)
Q Consensus 77 ~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~p~~ 154 (914)
..-.|+||++. |..+..+.-..+.+-.+.|+.+. .|++...+|++.+|++-...... ..+......|..+.+.. +
T Consensus 62 a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-N 138 (829)
T ss_pred cceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-C
Confidence 34568899874 67666655444478899999776 57777899999999987642221 11122233455555543 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEEEec-CCCCeeEEEEe--eCCCcCEEEEEEc--CC-eEEEEECCCCceEEEecCc
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFTLDA-HQKGVNCVDYF--TGGDKPYLITGSD--DH-TAKVWDYQTKSCVQTLEGH 228 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~l~~~~~--dg-~i~iwd~~~~~~~~~~~~~ 228 (914)
| +++-..+|++.+-.-.......++.. ......+.+|. +++...+++..-. .+ .+..-+..+. ....+...
T Consensus 139 G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~-q~~~~~~~ 215 (829)
T KOG2280|consen 139 G--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV-QLHALSWP 215 (829)
T ss_pred c--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccc-cccccCCC
Confidence 3 33334456655443222212222221 11111223332 2222112211111 01 0111111111 12223333
Q ss_pred ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeecCC-ccEEEEEEecCC
Q 002511 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGL-ERVWAIGYMKSS 283 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~ 283 (914)
.+.+..+..||+.++|+--...|.|.+-+....+....+.... .+...++|..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 4568889999999999999999999999888777666665321 222356665444
No 425
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.00 E-value=0.024 Score=39.64 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCce
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTM 49 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~ 49 (914)
...|.+++|+|...+||.+..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.3 Score=57.08 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=93.5
Q ss_pred CEEEEEEeCCCCEEEEE--EcCCeEEEEECCCCceE----EEEee------cCcccEEEEEEccCCCCEEEEEeCCCcEE
Q 002511 101 YIRCVAVHPTLPYVLSS--SDDMLIKLWDWEKGWMC----TQIFE------GHSHYVMQVTFNPKDTNTFASASLDRTIK 168 (914)
Q Consensus 101 ~i~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~----~~~~~------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~ 168 (914)
+|..+..++|+...++. +.+-.|..||+++-... ...+. .......++.|+|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45666677776654433 33447889998753111 11111 12234567889996667788888999999
Q ss_pred EEECCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecC----cccceEEEEEeCCCCEE
Q 002511 169 IWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEG----HTHNVSAVCFHPELPII 244 (914)
Q Consensus 169 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l 244 (914)
+..+........--......++++|+|.|. .+++|...|++.-|-.. ++....+.. ....|.+++|-....++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccc--eeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 988754433332223456678999999998 59999999999888754 443333322 14579999998877766
Q ss_pred EE
Q 002511 245 IT 246 (914)
Q Consensus 245 ~~ 246 (914)
++
T Consensus 259 vv 260 (1405)
T KOG3630|consen 259 VV 260 (1405)
T ss_pred EE
Confidence 65
No 427
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.86 E-value=0.027 Score=39.39 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK 91 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~ 91 (914)
..+|.+++|+|..+.||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4554
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.83 E-value=2.4 Score=42.77 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=125.3
Q ss_pred eEEEEEecCCCEEEEEECCCEEEEEECC------CCee-eEEEec-----CCCCEEEEEEeCCCCE------------EE
Q 002511 60 VRSAKFVARKQWVVAGADDMFIRVYNYN------TMDK-VKVFEA-----HTDYIRCVAVHPTLPY------------VL 115 (914)
Q Consensus 60 v~~~~~s~~~~~l~~g~~dg~i~vwd~~------t~~~-~~~~~~-----~~~~i~~~~~s~~~~~------------l~ 115 (914)
-..++++|.+.+-++....+...+||.. ..+. +-.+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888887778899999986 1222 223331 2345778888754333 57
Q ss_pred EEEcCCeEEEEECCCCce----EEEEee-cCcccE-EEEEEccC-CCCEEE-EEeCCCcEEEEECCCCCCcE--EE----
Q 002511 116 SSSDDMLIKLWDWEKGWM----CTQIFE-GHSHYV-MQVTFNPK-DTNTFA-SASLDRTIKIWNLGSPDPNF--TL---- 181 (914)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~----~~~~~~-~~~~~i-~~~~~~p~-~~~~l~-~~~~dg~i~vwd~~~~~~~~--~~---- 181 (914)
.+++||+|.-|...-+.. ....+. .....| ..+++-.. .+++|. +--..++|.+||-.-.+... .+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999998643312 111222 111222 33444321 234444 44457899999853322110 01
Q ss_pred -ecCCCCeeE--------EEEeeC-CCcCEEEEEEcCCeEEEEECCCCceEEEec--CcccceEEEEEeC------CCCE
Q 002511 182 -DAHQKGVNC--------VDYFTG-GDKPYLITGSDDHTAKVWDYQTKSCVQTLE--GHTHNVSAVCFHP------ELPI 243 (914)
Q Consensus 182 -~~~~~~v~~--------~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~------~~~~ 243 (914)
.....+.+. +.|... .....=+.|..-|.|-+||+. |+.++.+. +.-..-+.++..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 111111111 111110 000012233445789999976 77777764 2233456777755 4556
Q ss_pred EEEEECCCeEEEEeCCCceeEEEeecCCc------cEEEEEEec
Q 002511 244 IITGSEDGTVRIWHATTYRLENTLNYGLE------RVWAIGYMK 281 (914)
Q Consensus 244 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~v~~i~~~~ 281 (914)
|+----||+|..||..+++.+..+....+ .+|.++|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 66656799999999999988777765432 467777755
No 429
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.82 E-value=0.14 Score=61.20 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=26.9
Q ss_pred eeecccCCHHHHHHHHHHcCC--hHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
+++.+.|++++|.++.+.+.. ...|..|...+.+.|+.+.|.+.|.++.
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455556666655554432 2345666666666666666666665543
No 430
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.59 E-value=0.068 Score=60.85 Aligned_cols=102 Identities=25% Similarity=0.219 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCch
Q 002511 653 GRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNN 727 (914)
Q Consensus 653 ~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~ 727 (914)
|++++|.+++.++ .++..|..||+.+.+.|+++.|..|... -.+...+|.+++..+++.+...|+++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--------AAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--------AAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--------HHhcCCCChHHHHHHHHHHHhcccHH
Confidence 7777777777653 3467888999999999988888875433 34556778888888899999999888
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHCCCchHHHHHHHhc
Q 002511 728 VAFLCLFML--------GKLEDCLQLLVESNRIPEAALMARSY 762 (914)
Q Consensus 728 ~a~~~~~~~--------g~~~~a~~l~~~~~~~~~A~~~a~~~ 762 (914)
+|..||-.. .-+-+-..||.++|...+|++-.+..
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 888887663 11356678888888888888665554
No 431
>PHA03098 kelch-like protein; Provisional
Probab=95.45 E-value=0.66 Score=53.54 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=70.0
Q ss_pred CCEEEEEecC------CcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC-----CEEEEEECCCCeeeEEE
Q 002511 27 EPWILASLYS------GTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD-----MFIRVYNYNTMDKVKVF 95 (914)
Q Consensus 27 ~~~la~~~~~------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-----g~i~vwd~~t~~~~~~~ 95 (914)
+..++.|+.+ ..+..||..+++....-.............-++...+.|+.+ ..+..||..+.+....-
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 4455556543 257788877765432211111111112223367777788764 35778888776543221
Q ss_pred ec-CCCCEEEEEEeCCCCEEEEEEcC------CeEEEEECCCCceEEEEeec-CcccEEEEEEccCCCCEEEEEeCCC--
Q 002511 96 EA-HTDYIRCVAVHPTLPYVLSSSDD------MLIKLWDWEKGWMCTQIFEG-HSHYVMQVTFNPKDTNTFASASLDR-- 165 (914)
Q Consensus 96 ~~-~~~~i~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg-- 165 (914)
.- +...-.+++ .-++...+.|+.+ ..+..||..++ .....-.. ....-.++... ++.+++.|+.++
T Consensus 375 ~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 450 (534)
T PHA03098 375 PLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN-KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYID 450 (534)
T ss_pred CcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC-eeeecCCCCccccCceEEEE--CCEEEEECCccCCC
Confidence 11 111111222 2345566666632 45888998765 22221110 01111122222 456667776432
Q ss_pred ------cEEEEECCCCC
Q 002511 166 ------TIKIWNLGSPD 176 (914)
Q Consensus 166 ------~i~vwd~~~~~ 176 (914)
.+.+||..+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 451 NIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCcccceEEEecCCCCc
Confidence 37888887654
No 432
>PHA03098 kelch-like protein; Provisional
Probab=95.36 E-value=0.51 Score=54.45 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=87.1
Q ss_pred ecCCCEEEEEECCC------EEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCceE
Q 002511 66 VARKQWVVAGADDM------FIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD-----MLIKLWDWEKGWMC 134 (914)
Q Consensus 66 s~~~~~l~~g~~dg------~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 134 (914)
..++..++.|+.++ .+..||..+.+....-.-+..........-++...+.|+.+ ..+..||..++ ..
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W 370 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES-KW 370 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC-ce
Confidence 34566667776532 57788887766533211111111111122256666777754 35777887765 22
Q ss_pred EEEee-cCcccEEEEEEccCCCCEEEEEeCC------CcEEEEECCCCCCcEEEecCCCC--eeEEEEeeCCCcCEEEEE
Q 002511 135 TQIFE-GHSHYVMQVTFNPKDTNTFASASLD------RTIKIWNLGSPDPNFTLDAHQKG--VNCVDYFTGGDKPYLITG 205 (914)
Q Consensus 135 ~~~~~-~~~~~i~~~~~~p~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~l~~~ 205 (914)
...-. .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-... .....+ -.++. ..++. +++.|
T Consensus 371 ~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~-~~~~~--iyv~G 444 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG-SPLPISHYGGCAI-YHDGK--IYVIG 444 (534)
T ss_pred eeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeec-CCCCccccCceEE-EECCE--EEEEC
Confidence 22111 011111122222 56777777732 4578888876532211 111111 11222 22332 55555
Q ss_pred EcC--------CeEEEEECCCCceEEE--ecCcccceEEEEEeCCCCEEEEEECC-----CeEEEEeCCCce
Q 002511 206 SDD--------HTAKVWDYQTKSCVQT--LEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTYR 262 (914)
Q Consensus 206 ~~d--------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~~~ 262 (914)
+.+ ..+.+||..+++-... +....... +++. -++.+++.||.+ +.|.+||..+.+
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 532 2378888876543221 11111111 1222 256667777654 356777766543
No 433
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.33 E-value=0.21 Score=61.39 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=47.5
Q ss_pred eecccCCHHHHHHHHHHc------CChHHHHHHHHHHHHcCChhhHHHHHHHcCC-----------cchhHHHHHhcCCH
Q 002511 648 LAIQLGRLEVAQEIATEV------QSESKWKQLGELAMSTGKLEMAEGCMKQAMD-----------LSGLLLLYSSLGDA 710 (914)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~------~~~~~w~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~g~~ 710 (914)
.+.+.|++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|.++.. |..++..|...|+.
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 344455555555554433 2234455555555555555555555554421 22333444445554
Q ss_pred HHHHHHHHHHHHcCC------chHHHHHHHHcCCHHHHHHHHHHC
Q 002511 711 EGISKLASLAKEQGK------NNVAFLCLFMLGKLEDCLQLLVES 749 (914)
Q Consensus 711 ~~~~~~a~~a~~~~~------~~~a~~~~~~~g~~~~a~~l~~~~ 749 (914)
+...++-+.....|- ++.....|.+.|++++|.++|.++
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444444443332 233334444555555555555544
No 434
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.26 E-value=0.1 Score=63.98 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=71.9
Q ss_pred HHHHHHHHhCCChhhhhhcccC-------cccc-----eeeecccCCHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 002511 620 NSVARFLESRGMIEEAIEVATD-------PDYR-----FELAIQLGRLEVAQEIATEVQ--------SESKWKQLGELAM 679 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~~-------~~~~-----f~~~l~l~~~~~A~~~a~~~~--------~~~~w~~la~~al 679 (914)
+.+...+.+.|..++|+++... |+.. ...+.+.|++++|+++...+. +...|..|-..+.
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 4555566666666666554321 2211 244556677777777665542 2335666667777
Q ss_pred HcCChhhHHHHHHHcCCc---------chhHHHHHhcCCHHHHHHHHHHHHHcCCc------hHHHHHHHHcCCHHHHHH
Q 002511 680 STGKLEMAEGCMKQAMDL---------SGLLLLYSSLGDAEGISKLASLAKEQGKN------NVAFLCLFMLGKLEDCLQ 744 (914)
Q Consensus 680 ~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~g~~~~~~~~a~~a~~~~~~------~~a~~~~~~~g~~~~a~~ 744 (914)
+.|+++.|.+.|.++... ..++..|...|+.+...++-+.....|-. +.-...+...|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777666433 23455566666665555554444444321 122233444566666666
Q ss_pred HHHHCC
Q 002511 745 LLVESN 750 (914)
Q Consensus 745 l~~~~~ 750 (914)
+|..+.
T Consensus 671 l~~eM~ 676 (1060)
T PLN03218 671 ILQDAR 676 (1060)
T ss_pred HHHHHH
Confidence 665554
No 435
>PLN03077 Protein ECB2; Provisional
Probab=95.22 E-value=0.1 Score=64.21 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=78.1
Q ss_pred eeecccCCHHHHHHHHHHcCC--hHHHHHHHHHHHHcCChhhHHHHHHHcC---------CcchhHHHHHhcCCHHHHHH
Q 002511 647 ELAIQLGRLEVAQEIATEVQS--ESKWKQLGELAMSTGKLEMAEGCMKQAM---------DLSGLLLLYSSLGDAEGISK 715 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~~~--~~~w~~la~~al~~~~~~~A~~~y~~~~---------d~~~l~~l~~~~g~~~~~~~ 715 (914)
.++.+.|++++|.++.+.+.. ...|..|...+.+.|+++.|.+.|.++. .|..++..+...|+.+...+
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 566788999999999988754 3479999999999999999999998763 23455666667888777777
Q ss_pred HHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHCCC
Q 002511 716 LASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVESNR 751 (914)
Q Consensus 716 ~a~~a~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~~~ 751 (914)
+-+.+...|-. +.-..+|.+.|++++|.++|.++.+
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 77777666642 3334567778888888888766543
No 436
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.16 E-value=0.058 Score=56.06 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHH----HHHHHHHHHHHcCCchHH
Q 002511 654 RLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAE----GISKLASLAKEQGKNNVA 729 (914)
Q Consensus 654 ~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~----~~~~~a~~a~~~~~~~~a 729 (914)
++++|..+ +.+.|..+-..++++.|.+||.++.+ ++...++.. .+...+.+.... +...|
T Consensus 30 ~~e~Aa~~---------y~~Aa~~fk~~~~~~~A~~ay~kAa~------~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A 93 (282)
T PF14938_consen 30 DYEEAADL---------YEKAANCFKLAKDWEKAAEAYEKAAD------CYEKLGDKFEAAKAYEEAANCYKKG-DPDEA 93 (282)
T ss_dssp HHHHHHHH---------HHHHHHHHHHTT-CHHHHHHHHHHHH------HHHHTT-HHHHHHHHHHHHHHHHHT-THHHH
T ss_pred CHHHHHHH---------HHHHHHHHHHHhccchhHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH
Confidence 66776665 57788888888999999988887643 344444422 123333333322 44454
Q ss_pred HHHHHHcCCHHHHHHHHHHCCCchHHH----HHHHhcCCC--hHHHHHHHHHHhhh
Q 002511 730 FLCLFMLGKLEDCLQLLVESNRIPEAA----LMARSYLPS--KVSEIVAIWRKDLQ 779 (914)
Q Consensus 730 ~~~~~~~g~~~~a~~l~~~~~~~~~A~----~~a~~~~~~--~~~~~~~~~~~~L~ 779 (914)
..+ +++|+++|.+.|++..|+ .+++-|... .....++.|.+.+.
T Consensus 94 i~~------~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 94 IEC------YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHH------HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444 366888888888888876 344445444 56667777776654
No 437
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.15 E-value=6.1 Score=43.01 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=108.6
Q ss_pred EEEEecCCcEEEEeCCCCceeEEeeec--CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCC-CCEEEEE
Q 002511 30 ILASLYSGTVCIWNYQSQTMAKSFEVT--ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVA 106 (914)
Q Consensus 30 la~~~~~g~v~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~-~~i~~~~ 106 (914)
+.++..+|.|.-.|..++..+...... ...+.+-.+..+|+ +++++.+|.++.+|..+|+.+....... -.+..-.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 555567888888888888765433322 12233333334665 8888889999999998999988887655 1122222
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC--cccEEEEEEccCCCCEEEEEeC--CCcEEEEECCCCCCcEEEe
Q 002511 107 VHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH--SHYVMQVTFNPKDTNTFASASL--DRTIKIWNLGSPDPNFTLD 182 (914)
Q Consensus 107 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~ 182 (914)
.-.++ .+..++.+|.+...|..++...-...... ...+..-.. . ....++.+.. ++.+.-.|..+++......
T Consensus 150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-I-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred EEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-e-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 22233 34444477888888888773322211110 111111111 1 2344555555 5667777777776665532
Q ss_pred c----CCC------CeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCc
Q 002511 183 A----HQK------GVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGH 228 (914)
Q Consensus 183 ~----~~~------~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 228 (914)
. ... .+..-...-++ -+..++.++.+...|..+++.+..+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDG---GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECC---cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 1 111 11111111122 2567777888999999999998887753
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.10 E-value=5.4 Score=47.30 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEEEecCCCC--------eeEEEEeeC--------------CCcCEEEEEEcCCeEE
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFTLDAHQKG--------VNCVDYFTG--------------GDKPYLITGSDDHTAK 212 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~~--------------~~~~~l~~~~~dg~i~ 212 (914)
++.++.++.++.|.-.|..+++.+.++...... ...+.+... .....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888888888888877766432211 122333221 1122688888999999
Q ss_pred EEECCCCceEEEecCcccce-------------EEEEEeC--CCCEEEEEEC----------CCeEEEEeCCCceeEEEe
Q 002511 213 VWDYQTKSCVQTLEGHTHNV-------------SAVCFHP--ELPIIITGSE----------DGTVRIWHATTYRLENTL 267 (914)
Q Consensus 213 iwd~~~~~~~~~~~~~~~~v-------------~~i~~~~--~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~ 267 (914)
-.|.++|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|..+|+++..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 1111 0111122 1235666643 688999999999998877
Q ss_pred ec
Q 002511 268 NY 269 (914)
Q Consensus 268 ~~ 269 (914)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 439
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.031 Score=57.70 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHcCChhhHHHHHHHcCCc------------chhHHHHHhcCCHHHHHHHHHHHHH-----cCCchHHH
Q 002511 668 ESKWKQLGELAMSTGKLEMAEGCMKQAMDL------------SGLLLLYSSLGDAEGISKLASLAKE-----QGKNNVAF 730 (914)
Q Consensus 668 ~~~w~~la~~al~~~~~~~A~~~y~~~~d~------------~~l~~l~~~~g~~~~~~~~a~~a~~-----~~~~~~a~ 730 (914)
-..|+.=|..+-+.|++..|.+||..+-.. -+...++..+|....-..-.+.|.. ..-..+++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 357999999999999999999999987533 2333334444442221111111211 11246778
Q ss_pred HHHHHcCCHHHHHHHHHHCCCchHHHHHHHhcCCChHHHHHHHHHHhhhhcCh----------hhhh--hcCCCccCCCc
Q 002511 731 LCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNP----------KAAE--SLADPEEYSNL 798 (914)
Q Consensus 731 ~~~~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~~~~~~~~~~~~~~~L~~~~~----------~~a~--~l~~~~~~~~~ 798 (914)
.|++.++++++|++-|.++-+.+.-.+.+|++...+...=..+|+.|...... |+.+ +|. -+|..
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~---~Hpd~ 405 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALV---HHPDK 405 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHH---hCCCc
Confidence 89999999999999998887777766677766432222222345555433210 1111 111 11111
Q ss_pred cccHHHHHHHHHHHhhccCCCCCCccccc
Q 002511 799 FDDWQVALAVESKAAATRGVHPPAEDYVN 827 (914)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 827 (914)
-. ..++|+|..|+++..+|....++.+
T Consensus 406 ~a--gsq~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 406 NA--GSQKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred Cc--chhHHHHHHHHHHHHHHHHhcCHHH
Confidence 11 1168999999999999988888754
No 440
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.91 E-value=0.27 Score=57.87 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred ccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002511 651 QLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (914)
Q Consensus 651 ~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (914)
.+|++++|....+.. .++..|..+|..+...|+++.|+++|.++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444455554444321 22444455555555555555555555543
No 441
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.90 E-value=5 Score=40.77 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=84.5
Q ss_pred CeEEEEEecCCCEEEEEE---CCCEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEE-CCCCceE
Q 002511 59 PVRSAKFVARKQWVVAGA---DDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWD-WEKGWMC 134 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~---~dg~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~ 134 (914)
.+.+.+++++++.++... ....+.++... ....... ....++...|++++...+....+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999888766 34456666543 3222221 223688889999987666666566666663 2222122
Q ss_pred EEEee-c-CcccEEEEEEccCCCCEEEEEe---CCCcEEEEECC---CCCC------cEEEecCCCCeeEEEEeeCCCcC
Q 002511 135 TQIFE-G-HSHYVMQVTFNPKDTNTFASAS---LDRTIKIWNLG---SPDP------NFTLDAHQKGVNCVDYFTGGDKP 200 (914)
Q Consensus 135 ~~~~~-~-~~~~i~~~~~~p~~~~~l~~~~---~dg~i~vwd~~---~~~~------~~~~~~~~~~v~~~~~~~~~~~~ 200 (914)
..... . ....|..+.++| |+..++... .++.|.+--+. .+.+ ..........+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-- 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-- 178 (253)
T ss_pred eEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE--
Confidence 21111 1 112799999999 777766655 24667666542 2211 112223346788999998876
Q ss_pred EEEEEE
Q 002511 201 YLITGS 206 (914)
Q Consensus 201 ~l~~~~ 206 (914)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 444443
No 442
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.74 E-value=5.4 Score=40.37 Aligned_cols=218 Identities=13% Similarity=0.136 Sum_probs=123.3
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCC-------CCceeEEeee-----cCCCeEEEEEecCCCE------------EE
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQ-------SQTMAKSFEV-----TELPVRSAKFVARKQW------------VV 73 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~-------~~~~~~~~~~-----~~~~v~~~~~s~~~~~------------l~ 73 (914)
-+.|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999877777778899999986 1223333332 1246778888754433 57
Q ss_pred EEECCCEEEEEECCCCee-----eEEEe-cCCCC-EEEEEEeCC--CCEEEEE-EcCCeEEEEECCCCceEEEE---ee-
Q 002511 74 AGADDMFIRVYNYNTMDK-----VKVFE-AHTDY-IRCVAVHPT--LPYVLSS-SDDMLIKLWDWEKGWMCTQI---FE- 139 (914)
Q Consensus 74 ~g~~dg~i~vwd~~t~~~-----~~~~~-~~~~~-i~~~~~s~~--~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~- 139 (914)
.+++||+|.-|+..-+.. ...+. ..... -..+++... +.+|..+ -..++|.++|-.-. .... +.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~--~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR--PPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc--cccCCCCccC
Confidence 778999999998532211 12222 11122 334555433 4556544 34688888874422 1111 00
Q ss_pred ---------------cCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEe--cCCCCeeEEEEeeCC----C
Q 002511 140 ---------------GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLD--AHQKGVNCVDYFTGG----D 198 (914)
Q Consensus 140 ---------------~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~----~ 198 (914)
+..-.|+-..-.+ +.+.=+.|..-|.|-+||+. ++.++++. +.-...+.++..|.. .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0001111111122 12222333445789999974 45565553 222344667765532 1
Q ss_pred cCEEEEEEcCCeEEEEECCCCceEEEecCccc------ceEEEEEeC
Q 002511 199 KPYLITGSDDHTAKVWDYQTKSCVQTLEGHTH------NVSAVCFHP 239 (914)
Q Consensus 199 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~i~~~~ 239 (914)
+.+|+--..||+|..||..+++.+-.+....+ .++.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 22666667799999999998887777664333 356777755
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.58 E-value=9.5 Score=44.90 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=49.8
Q ss_pred ccEEEEEEccCCCCEEEEEeCCCcEEEEECCC-CCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCce
Q 002511 143 HYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC 221 (914)
Q Consensus 143 ~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 221 (914)
-.|..+..+| ++.+++..|..| |.|..+.. ......+.+....+.|-.+.-+..
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~----------------------- 139 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER----------------------- 139 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh-----------------------
Confidence 3578888898 788888777644 44544422 111112222222333322211110
Q ss_pred EEEecCcccceEEEEEeCC---CCEEEEEECCCeEEEEeCCCce
Q 002511 222 VQTLEGHTHNVSAVCFHPE---LPIIITGSEDGTVRIWHATTYR 262 (914)
Q Consensus 222 ~~~~~~~~~~v~~i~~~~~---~~~l~~~~~dg~v~iwd~~~~~ 262 (914)
.. ...+...|..+.|+|. +..|++-..|+++|+||+...+
T Consensus 140 ~~-~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 140 FF-TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred hc-cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 00 0113345677788875 3677777778888888876433
No 444
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.58 E-value=0.15 Score=55.61 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=32.6
Q ss_pred eecccCCHHHHHHHHHHc---CC--hHHHHHHHHHHHHcCChhhHHHHHHHcCCc
Q 002511 648 LAIQLGRLEVAQEIATEV---QS--ESKWKQLGELAMSTGKLEMAEGCMKQAMDL 697 (914)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~---~~--~~~w~~la~~al~~~~~~~A~~~y~~~~d~ 697 (914)
+.-..|++.+|.....+. +. .-.|..||-....+|++-.|++.|.++--+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 444567777777765432 11 226778887777888888888777766533
No 445
>PHA02790 Kelch-like protein; Provisional
Probab=94.53 E-value=1.6 Score=49.33 Aligned_cols=182 Identities=10% Similarity=0.085 Sum_probs=84.2
Q ss_pred CCCEEEEEECC-----CEEEEEECCCCeeeEEEecCCCCEEEEEEeCCCCEEEEEEcC--CeEEEEECCCC-ceEEEEee
Q 002511 68 RKQWVVAGADD-----MFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD--MLIKLWDWEKG-WMCTQIFE 139 (914)
Q Consensus 68 ~~~~l~~g~~d-----g~i~vwd~~t~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~-~~~~~~~~ 139 (914)
++..+++|+.+ ..+..||..+.+....-.-...........-++...++|+.+ ..+..||..++ |.....+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 45556777654 257778887765433221111111111122356666677653 35778887654 22222221
Q ss_pred cCcccEEEEEEccCCCCEEEEEeCCC---cEEEEECCCCCCcEEEecCCCCe--eEEEEeeCCCcCEEEEEEcCCeEEEE
Q 002511 140 GHSHYVMQVTFNPKDTNTFASASLDR---TIKIWNLGSPDPNFTLDAHQKGV--NCVDYFTGGDKPYLITGSDDHTAKVW 214 (914)
Q Consensus 140 ~~~~~i~~~~~~p~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~dg~i~iw 214 (914)
...... +++.. ++.+.+.|+.++ .+..||..+.+-... .....+. .+++ ..++. +.+.| |.+.+|
T Consensus 351 ~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~-~~~~~--IYv~G---G~~e~y 420 (480)
T PHA02790 351 KPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCAL-VFGRR--LFLVG---RNAEFY 420 (480)
T ss_pred CCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEE-EECCE--EEEEC---CceEEe
Confidence 111111 22222 577778877654 467788765432211 1111111 1222 22332 44444 357788
Q ss_pred ECCCCceEE--EecCcccceEEEEEeCCCCEEEEEECC-----CeEEEEeCCCc
Q 002511 215 DYQTKSCVQ--TLEGHTHNVSAVCFHPELPIIITGSED-----GTVRIWHATTY 261 (914)
Q Consensus 215 d~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d-----g~v~iwd~~~~ 261 (914)
|..+++-.. .+....... +++. -++++.++||.+ ..+..||..+.
T Consensus 421 dp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 887654322 111111112 2222 356677777754 24556665543
No 446
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.51 E-value=0.3 Score=57.54 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=54.8
Q ss_pred eeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCC----cch---hHHHHHhcCCHHHHH
Q 002511 647 ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMD----LSG---LLLLYSSLGDAEGIS 714 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d----~~~---l~~l~~~~g~~~~~~ 714 (914)
.++.+.|++++|.+.+++. ++...|..+|..+...|+++.|+.+|.+.-. ... ....+...|+.+...
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~ 197 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDH 197 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 4556777888877766542 3455777788888888888888887765421 110 111234456654444
Q ss_pred HHHHHHHHcCC-c-----hHHHHHHHHcCCHHHHHHHHH
Q 002511 715 KLASLAKEQGK-N-----NVAFLCLFMLGKLEDCLQLLV 747 (914)
Q Consensus 715 ~~a~~a~~~~~-~-----~~a~~~~~~~g~~~~a~~l~~ 747 (914)
...+.+..... . .....++...|++++|++.|.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333222210 0 122344555677766665554
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=94.44 E-value=1.7 Score=49.08 Aligned_cols=143 Identities=9% Similarity=-0.062 Sum_probs=68.6
Q ss_pred CCEEEEEecCC-----cEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECC--CEEEEEECCCCeeeEEEecCC
Q 002511 27 EPWILASLYSG-----TVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADD--MFIRVYNYNTMDKVKVFEAHT 99 (914)
Q Consensus 27 ~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~vwd~~t~~~~~~~~~~~ 99 (914)
+..+++|+.++ .+..||..+++....-.............-++...++|+.+ ..+..||..+.+....-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 44556666532 47778877764332211111111111223467777777753 357788876654432211111
Q ss_pred CCEEEEEEeCCCCEEEEEEcCC---eEEEEECCCCceEEEE--eecCcccEEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 002511 100 DYIRCVAVHPTLPYVLSSSDDM---LIKLWDWEKGWMCTQI--FEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS 174 (914)
Q Consensus 100 ~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 174 (914)
.........-+|...++|+.++ .+..||.+++ ..... +.........+.+ ++.+.+.| |.+.+||..+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~~---~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALVF---GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEEE---CCEEEEEC---CceEEecCCC
Confidence 1111112223566667776543 4678888765 33221 1111111112222 45566665 4577888866
Q ss_pred CC
Q 002511 175 PD 176 (914)
Q Consensus 175 ~~ 176 (914)
++
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 54
No 448
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.36 E-value=0.34 Score=50.57 Aligned_cols=169 Identities=24% Similarity=0.325 Sum_probs=104.3
Q ss_pred chhHhHHHHHHccCHHHHhhhcCCCCcchH-------HH--HHHHHHh-------CCChhhhhhcccCcccce----eee
Q 002511 590 LSLIEYKTLVMRGDLERANEILPSIPKEHH-------NS--VARFLES-------RGMIEEAIEVATDPDYRF----ELA 649 (914)
Q Consensus 590 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-------~~--~~~~~~~-------~~~~~~a~~~~~~~~~~f----~~~ 649 (914)
+.+......+.++|++.|.++|.-.+...- +. +.+|++. +.+.+.|+.+..-..++. ..+
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 344444556668999998887654433221 11 2355544 333344443332222222 567
Q ss_pred cccCCHHHHHHHHHHc-CChH----HHHHHHHHHHHcCChhhHHHHHHHcC---------------------CcchhHHH
Q 002511 650 IQLGRLEVAQEIATEV-QSES----KWKQLGELAMSTGKLEMAEGCMKQAM---------------------DLSGLLLL 703 (914)
Q Consensus 650 l~l~~~~~A~~~a~~~-~~~~----~w~~la~~al~~~~~~~A~~~y~~~~---------------------d~~~l~~l 703 (914)
...|+++.|.+..++. .+.. .--.+|-.|...|+++.|.+||.+.. |...+..+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 7889999999998753 2222 22357778899999999999998764 22222222
Q ss_pred HHh-----cCCHHHHHHHHHHHHHcCCchHHHHHHHHcCC--------HHHHHHHHHHCCCchHHHHH
Q 002511 704 YSS-----LGDAEGISKLASLAKEQGKNNVAFLCLFMLGK--------LEDCLQLLVESNRIPEAALM 758 (914)
Q Consensus 704 ~~~-----~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~--------~~~a~~l~~~~~~~~~A~~~ 758 (914)
|.+ -.|+..+.+++++-.++|+-.+||.|+.-.=+ ++=-...|+.+.-|++|+.+
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 322 34666778899999999999999999744322 23344567777777777733
No 449
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.19 Score=53.03 Aligned_cols=60 Identities=30% Similarity=0.318 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHHcCChhhHHHHHHHc---CCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 002511 665 VQSESKWKQLGELAMSTGKLEMAEGCMKQA---MDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFM 735 (914)
Q Consensus 665 ~~~~~~w~~la~~al~~~~~~~A~~~y~~~---~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~ 735 (914)
-.++.+|..||+-+++.++++.|++||.++ +|..+ ..+.++|++=...++.+.|..+|.+
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-----------~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-----------SALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356889999999999999999999999986 33332 3346677777776777777776654
No 450
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.35 E-value=0.46 Score=45.62 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcC-----------CcchhHHHHHhcCCHHHHHHHHHHHH
Q 002511 653 GRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAM-----------DLSGLLLLYSSLGDAEGISKLASLAK 721 (914)
Q Consensus 653 ~~~~~A~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~-----------d~~~l~~l~~~~g~~~~~~~~a~~a~ 721 (914)
.++++|++... +....|..+|..+...|+.+.|.+.|.++- +|.. ..+..|.++.-+..-+.|.
T Consensus 56 ~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~---FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 56 KNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA---FLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH---HHHhCCChHHHHHHHHHHH
Confidence 34444444422 346689999999999999999999999874 3322 2234556666555555553
Q ss_pred H-------cCCchHHHHHHHHcCCHHHHHHHHHHC-----CCchHHHHHHHhcCC
Q 002511 722 E-------QGKNNVAFLCLFMLGKLEDCLQLLVES-----NRIPEAALMARSYLP 764 (914)
Q Consensus 722 ~-------~~~~~~a~~~~~~~g~~~~a~~l~~~~-----~~~~~A~~~a~~~~~ 764 (914)
. .+-+.=++.|+++.|+++.|.+.|.++ +.+...++|++.+..
T Consensus 131 ~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 131 ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 2 344566789999999999999988765 555666688877644
No 451
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.35 E-value=0.21 Score=47.39 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHcCC----hHHHHHHHHHHHHcCChhhHHHHHHHcCCcc-----------hhHHHHHhcCCHHHHHHH
Q 002511 652 LGRLEVAQEIATEVQS----ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS-----------GLLLLYSSLGDAEGISKL 716 (914)
Q Consensus 652 l~~~~~A~~~a~~~~~----~~~w~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~g~~~~~~~~ 716 (914)
+.+++.-++-++..-- ...|..+|+++.+.|+++.|.+||.++.+|- .++++....+|...+...
T Consensus 16 ~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344444444442211 3468899999999999999999999999884 444555556776555443
Q ss_pred HHHH----HHcCCc-------hHHHHHHHHcCCHHHHHHHHHHCC
Q 002511 717 ASLA----KEQGKN-------NVAFLCLFMLGKLEDCLQLLVESN 750 (914)
Q Consensus 717 a~~a----~~~~~~-------~~a~~~~~~~g~~~~a~~l~~~~~ 750 (914)
...+ ...|++ -..+..++..++|.+|.++|+++.
T Consensus 96 i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 96 IEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 2222 111211 122334555677777777777664
No 452
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.46 Score=55.64 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=86.5
Q ss_pred cEEEEEEccCCCCEEEE--EeCCCcEEEEECCCCCCc-----EEE------ecCCCCeeEEEEeeCCCcCEEEEEEcCCe
Q 002511 144 YVMQVTFNPKDTNTFAS--ASLDRTIKIWNLGSPDPN-----FTL------DAHQKGVNCVDYFTGGDKPYLITGSDDHT 210 (914)
Q Consensus 144 ~i~~~~~~p~~~~~l~~--~~~dg~i~vwd~~~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 210 (914)
+|..+..++ |....++ .+.+-.|..||++....- ..+ .....-..++.|.|.-.. ..+++..|+.
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~-n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL-NSAVDLSDLS 179 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc-hhhhhccccc
Confidence 344455555 4433333 333447888998653211 111 112233457788876543 4667778888
Q ss_pred EEEEECCCCc-eEEEecCcccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec----CCccEEEEEEecCCCE
Q 002511 211 AKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY----GLERVWAIGYMKSSRR 285 (914)
Q Consensus 211 i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~ 285 (914)
|++..+.... .+..+. .....++++|+|.|+.++.|-..|++.-|... ++....+.. ...+|.+++|-....+
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 8887765322 222222 45568999999999999999999999998754 333333222 2478999999877666
Q ss_pred EEE
Q 002511 286 IVI 288 (914)
Q Consensus 286 l~~ 288 (914)
+++
T Consensus 258 lvv 260 (1405)
T KOG3630|consen 258 LVV 260 (1405)
T ss_pred EEE
Confidence 554
No 453
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.16 E-value=0.12 Score=58.94 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=50.3
Q ss_pred ccCCHHHHHHHHHH-----cCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 002511 651 QLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGK 725 (914)
Q Consensus 651 ~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~ 725 (914)
++|+++.|+...-. -.+...|..+|++..+.|+++.|.-||.|+= ...-.+.+.+.+-+.+..+.|+
T Consensus 185 qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI--------~~~p~n~~~~~ers~L~~~~G~ 256 (895)
T KOG2076|consen 185 QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI--------QANPSNWELIYERSSLYQKTGD 256 (895)
T ss_pred HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH--------hcCCcchHHHHHHHHHHHHhCh
Confidence 44455555544332 2346899999999999999999999999863 2223334455555666666666
Q ss_pred chHHHHHHHH
Q 002511 726 NNVAFLCLFM 735 (914)
Q Consensus 726 ~~~a~~~~~~ 735 (914)
...|..++.+
T Consensus 257 ~~~Am~~f~~ 266 (895)
T KOG2076|consen 257 LKRAMETFLQ 266 (895)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 454
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=13 Score=43.90 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=56.1
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECC---------CCee---eEEE--------ecCCCCEEEEEEeCC---CCEEE
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYN---------TMDK---VKVF--------EAHTDYIRCVAVHPT---LPYVL 115 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~---------t~~~---~~~~--------~~~~~~i~~~~~s~~---~~~l~ 115 (914)
.|..+.++|+|++++..|..|...+.=.+ .|+. .+++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58889999999999999887755443211 1111 1111 134557999999996 47899
Q ss_pred EEEcCCeEEEEECCCCceEEEEe
Q 002511 116 SSSDDMLIKLWDWEKGWMCTQIF 138 (914)
Q Consensus 116 ~~~~dg~i~iwd~~~~~~~~~~~ 138 (914)
+-+.|+++++||+.....+.+++
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEecCCEEEEEecCCCCCCeEEE
Confidence 99999999999998654444443
No 455
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.11 E-value=0.49 Score=46.00 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHH-----cCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHH-HHHhcCC--HHHHHH
Q 002511 652 LGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLL-LYSSLGD--AEGISK 715 (914)
Q Consensus 652 l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~-l~~~~g~--~~~~~~ 715 (914)
.++.+++....+. -++...|..||..++..++++.|+.+|.++-.+. .+.. +|...|+ .+....
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3444554444332 3568899999999999999999999999886443 2222 2334444 233444
Q ss_pred HHHHHHHcCCchH-----HHHHHHHcCCHHHHHHHHHH
Q 002511 716 LASLAKEQGKNNV-----AFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 716 ~a~~a~~~~~~~~-----a~~~~~~~g~~~~a~~l~~~ 748 (914)
+.+.+...+-.+. -+.+++..|++++|+..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433333221 12233445666666665554
No 456
>PLN03077 Protein ECB2; Provisional
Probab=94.04 E-value=0.31 Score=59.93 Aligned_cols=155 Identities=18% Similarity=0.096 Sum_probs=107.4
Q ss_pred ccCHHHHhhhcCCCCcc--hHHHHHHHHHhCCChhhhhhcccC-------cccc-----eeeecccCCHHHHHHHHHHcC
Q 002511 601 RGDLERANEILPSIPKE--HHNSVARFLESRGMIEEAIEVATD-------PDYR-----FELAIQLGRLEVAQEIATEVQ 666 (914)
Q Consensus 601 ~~~~~~a~~~l~~i~~~--~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~-----f~~~l~l~~~~~A~~~a~~~~ 666 (914)
.|.+++|..++...+.. ..+.+..-+.+.|+.++|+.+... |+.. +..+...|++++|+++.+.+.
T Consensus 537 ~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred cCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 67888887776655332 236677777888888888877532 3322 245667899999999987653
Q ss_pred -------ChHHHHHHHHHHHHcCChhhHHHHHHHcC------CcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHH
Q 002511 667 -------SESKWKQLGELAMSTGKLEMAEGCMKQAM------DLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCL 733 (914)
Q Consensus 667 -------~~~~w~~la~~al~~~~~~~A~~~y~~~~------d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~ 733 (914)
+...+..+.+.+.+.|+++.|++.+.++. -|..|+..|+..++.+..+.+++......-.+.
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~----- 691 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV----- 691 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-----
Confidence 34578899999999999999999999874 123455556667776665555555444333332
Q ss_pred HHcCCHHHHHHHHHHCCCchHHHHHHHhcC
Q 002511 734 FMLGKLEDCLQLLVESNRIPEAALMARSYL 763 (914)
Q Consensus 734 ~~~g~~~~a~~l~~~~~~~~~A~~~a~~~~ 763 (914)
+-+.....+|.+.|+|++|..+++...
T Consensus 692 ---~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 692 ---GYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred ---chHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 234455678999999999998887753
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.97 E-value=2.1 Score=46.39 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=77.6
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------cCC-cEEEEeCCC--Cce--eEEeeecCCCeEEEEEecCCCEEEEEECCC
Q 002511 16 ERVKSVDLHPSEPWILASL-----------YSG-TVCIWNYQS--QTM--AKSFEVTELPVRSAKFVARKQWVVAGADDM 79 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~-----------~~g-~v~iwd~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 79 (914)
.....|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+...-...+.+++.++| |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC-
Confidence 4578899999999666542 223 787776443 332 23343333456889999998 4444444
Q ss_pred EEEEE-ECCCC-----eee---EEEec----CCCCEEEEEEeCCCCEEEEEEcC-------------------CeEEEEE
Q 002511 80 FIRVY-NYNTM-----DKV---KVFEA----HTDYIRCVAVHPTLPYVLSSSDD-------------------MLIKLWD 127 (914)
Q Consensus 80 ~i~vw-d~~t~-----~~~---~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-------------------g~i~iwd 127 (914)
.|..| +.+.. +.. ..+.. +......+.|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 34444 44311 211 11222 12347789999999765544421 4455555
Q ss_pred CCCCceEEEEeecCcccEEEEEEccCCCCEEEEE
Q 002511 128 WEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASA 161 (914)
Q Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~ 161 (914)
.+++ .....-.++ .....++|+| +++++++-
T Consensus 171 pdg~-~~e~~a~G~-rnp~Gl~~d~-~G~l~~td 201 (367)
T TIGR02604 171 PDGG-KLRVVAHGF-QNPYGHSVDS-WGDVFFCD 201 (367)
T ss_pred cCCC-eEEEEecCc-CCCccceECC-CCCEEEEc
Confidence 5554 222222232 2346778887 66666553
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.91 E-value=0.048 Score=61.54 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred hcccCCCCEEEEEEcC-CCCEEEEEecCCcEEEEeCC--CCceeEEeee-----cCCCeEEEEEec---CCCEEEEEECC
Q 002511 10 KLAQRSERVKSVDLHP-SEPWILASLYSGTVCIWNYQ--SQTMAKSFEV-----TELPVRSAKFVA---RKQWVVAGADD 78 (914)
Q Consensus 10 ~l~~h~~~v~~~~~sp-~~~~la~~~~~g~v~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~---~~~~l~~g~~d 78 (914)
.++|.++.|-.+.|-. +-+.++ -.-|...||++. .|++...+.. ...++.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567778888888843 333333 334778899875 3544433332 234556666655 66778888888
Q ss_pred CEEEEEECCCCeeeEEEecCCCCEEEEEE-----------eCCCCEEEEEEcCCeEEEEE
Q 002511 79 MFIRVYNYNTMDKVKVFEAHTDYIRCVAV-----------HPTLPYVLSSSDDMLIKLWD 127 (914)
Q Consensus 79 g~i~vwd~~t~~~~~~~~~~~~~i~~~~~-----------s~~~~~l~~~~~dg~i~iwd 127 (914)
+.|++.++++... ..+.+|...+..++| ||||..++..+.||.++.|.
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 9999888765433 445567776666554 55555555555555555554
No 459
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.74 E-value=0.56 Score=51.64 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=49.7
Q ss_pred eecccCCHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCC
Q 002511 648 LAIQLGRLEVAQEIATEVQS----------ESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGD 709 (914)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~~~----------~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~g~ 709 (914)
++.+.|++++|.++.+.+.. ...|..+|..+...++++.|+++|.++-... .+..+|...|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 34455666666655543311 1134455666666666666666666543211 23334555566
Q ss_pred HHHHHHHHHHHHHcCCc------hHHHHHHHHcCCHHHHHHHHHHC
Q 002511 710 AEGISKLASLAKEQGKN------NVAFLCLFMLGKLEDCLQLLVES 749 (914)
Q Consensus 710 ~~~~~~~a~~a~~~~~~------~~a~~~~~~~g~~~~a~~l~~~~ 749 (914)
.+......+.+...+.. .....++...|++++|++.+.+.
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55444433333322211 12234455566777666666553
No 460
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.72 E-value=0.78 Score=58.30 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=69.4
Q ss_pred ecccCCHHHHHHHHHHc-CChHHHHHHHHHHHHcCChhhHHHHHHHcCCc--------chhHHHHHhcCCHHHHHHHHHH
Q 002511 649 AIQLGRLEVAQEIATEV-QSESKWKQLGELAMSTGKLEMAEGCMKQAMDL--------SGLLLLYSSLGDAEGISKLASL 719 (914)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~--------~~l~~l~~~~g~~~~~~~~a~~ 719 (914)
....|++++|.++++.. .++..+..||..++..|+++.|+++|.++-.. -.+..+|...|+.+......+.
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45678889998888754 34567888999999999999999999977532 2445566677776665555544
Q ss_pred HHHcCCc-----hHHHHHHHHcCCHHHHHHHHHHCC
Q 002511 720 AKEQGKN-----NVAFLCLFMLGKLEDCLQLLVESN 750 (914)
Q Consensus 720 a~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~~~ 750 (914)
+...... ...+.++...|++++|+++|.+.-
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4332211 112445667788888888777653
No 461
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.71 E-value=0.81 Score=41.64 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=70.4
Q ss_pred HHHHHHHHhCCChhhhhhcc-cCcccce----eeecccCCHHHHHHHHHHc---C--ChHHHHHHHHHHHHcCChhhHHH
Q 002511 620 NSVARFLESRGMIEEAIEVA-TDPDYRF----ELAIQLGRLEVAQEIATEV---Q--SESKWKQLGELAMSTGKLEMAEG 689 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-~~~~~~f----~~~l~l~~~~~A~~~a~~~---~--~~~~w~~la~~al~~~~~~~A~~ 689 (914)
..+..|+..-|-......++ .+....+ ....+.|++++|.++.+.+ + +..-|-.||-.+-..|+++.|+.
T Consensus 11 ~~~~~f~~~Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~ 90 (157)
T PRK15363 11 HDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY 90 (157)
T ss_pred HHHHHHHHcCCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34455555555555444444 3332222 3446788888888876643 3 46789999999999999999999
Q ss_pred HHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHH
Q 002511 690 CMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLV 747 (914)
Q Consensus 690 ~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g~~~~a~~l~~ 747 (914)
||.++.-++ ..|+.-.. -++.|++.+|+.+.|.+.|.
T Consensus 91 aY~~A~~L~--------~ddp~~~~-------------~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 91 AYGRAAQIK--------IDAPQAPW-------------AAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHhcC--------CCCchHHH-------------HHHHHHHHcCCHHHHHHHHH
Confidence 999875432 23322222 25567778888888888776
No 462
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.65 E-value=0.3 Score=53.79 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCChhhhhhccc----Cccc----c-------eeeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHH
Q 002511 620 NSVARFLESRGMIEEAIEVAT----DPDY----R-------FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAM 679 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~----~~~~----~-------f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al 679 (914)
..+..++...|..++|+.... .|.. . -..+...|++++|.++.+.. .....+..|+..+.
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 152 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444555666666666654421 1110 0 13456678888888887654 23557888899999
Q ss_pred HcCChhhHHHHHHHcCCcc-------------hhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHH
Q 002511 680 STGKLEMAEGCMKQAMDLS-------------GLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLED 741 (914)
Q Consensus 680 ~~~~~~~A~~~y~~~~d~~-------------~l~~l~~~~g~~~~~~~~a~~a~~~~~~-----~~a~~~~~~~g~~~~ 741 (914)
..|+++.|+++|.++-... .+..++...|+.+......+.+...... ...+.++...|++++
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA 232 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999888763221 1222334456655444443333322211 122234445566666
Q ss_pred HHHHHHHC
Q 002511 742 CLQLLVES 749 (914)
Q Consensus 742 a~~l~~~~ 749 (914)
|+++|.+.
T Consensus 233 A~~~~~~~ 240 (389)
T PRK11788 233 AIEALERV 240 (389)
T ss_pred HHHHHHHH
Confidence 66665543
No 463
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=4.3 Score=49.72 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=109.3
Q ss_pred CCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecC-CCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEE
Q 002511 16 ERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTE-LPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKV 94 (914)
Q Consensus 16 ~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~ 94 (914)
.....++|+|....+|.+...|.|++|-...-+.......-. ..+..+.|-.......+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 467789999999999999999999999843322221111000 122223333333333344445556666543221111
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEE-EEcc-CCCCEEEEEeCCCcEEEEEC
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQV-TFNP-KDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-~~~p-~~~~~l~~~~~dg~i~vwd~ 172 (914)
+...+++..-.+--.. +.| ..+.+++||+.-.....-.+..-...-... .+.+ ...-..... +-.-..|.+
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~ 187 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVI--DLDTVLISL 187 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeecccc--ccccceeec
Confidence 1222333322222223 444 778888888764321111111111000000 0000 000000000 000111111
Q ss_pred CCCCCcEEEecCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceEEEecCcccceEEEEEeCCCCEEEEEECCCe
Q 002511 173 GSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGT 252 (914)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~dg~ 252 (914)
.-. . ..+..+...+.+..+..... +..+..-+.+.+|+.........+. +....+++++..++++..||.
T Consensus 188 ~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDA-Y-LGLSLIEYESLQVLYYSPTK---ILIGFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDGS 257 (993)
T ss_pred ccc-c-ccccccccccceeeeecCCC---cceeeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecCC
Confidence 111 1 22233445555665554443 5666666777777754333222222 111222888999999999999
Q ss_pred EEEEeCCCcee
Q 002511 253 VRIWHATTYRL 263 (914)
Q Consensus 253 v~iwd~~~~~~ 263 (914)
+.+||...+..
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998765
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.59 E-value=13 Score=40.37 Aligned_cols=141 Identities=16% Similarity=0.071 Sum_probs=77.2
Q ss_pred CCeEEEEEecCCCEEEEEE-----------CCC-EEEEEECCC--Ce--eeEEEecCCCCEEEEEEeCCCCEEEEEEcCC
Q 002511 58 LPVRSAKFVARKQWVVAGA-----------DDM-FIRVYNYNT--MD--KVKVFEAHTDYIRCVAVHPTLPYVLSSSDDM 121 (914)
Q Consensus 58 ~~v~~~~~s~~~~~l~~g~-----------~dg-~i~vwd~~t--~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 121 (914)
.....|+|.++|+.+++-. ..+ .|.+++-.+ |+ ....+.......+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3457789999998766642 223 677776432 22 234444444456889999988 44444444
Q ss_pred eEEEEECCCC-------ceEEEEeec----CcccEEEEEEccCCCCEEEEEeCC-------------------CcEEEEE
Q 002511 122 LIKLWDWEKG-------WMCTQIFEG----HSHYVMQVTFNPKDTNTFASASLD-------------------RTIKIWN 171 (914)
Q Consensus 122 ~i~iwd~~~~-------~~~~~~~~~----~~~~i~~~~~~p~~~~~l~~~~~d-------------------g~i~vwd 171 (914)
..++.|.+.. ..+...+.. +.+....+.|.| ++.+.++.+.. |.|..++
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3334454321 112222222 234577899999 77766654421 3455555
Q ss_pred CCCCCCcEEEecCCCCeeEEEEeeCCCcCEEEE
Q 002511 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLIT 204 (914)
Q Consensus 172 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 204 (914)
..+++. ..+...-.....++|++.++ ++++
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~--l~~t 200 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGD--VFFC 200 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCC--EEEE
Confidence 544432 22222233446788888776 4444
No 465
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.58 E-value=7.8 Score=42.57 Aligned_cols=149 Identities=12% Similarity=0.025 Sum_probs=84.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEecCC-CCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE
Q 002511 57 ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHT-DYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT 135 (914)
Q Consensus 57 ~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 135 (914)
..+|..+.+...| .+.+|+.|| +..||..+++.++.-.... .+|..+.-+-.| .|.+|+.+| |.+.+.++. ...
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~-~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGW-RAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhc-ccc
Confidence 4567788888777 477788887 6688888887776654433 566666666555 578888877 777776652 222
Q ss_pred EEeec-CcccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCcEEEecC--CCCeeEEEEeeCCCcCEEEEEEcCCeEE
Q 002511 136 QIFEG-HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAH--QKGVNCVDYFTGGDKPYLITGSDDHTAK 212 (914)
Q Consensus 136 ~~~~~-~~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 212 (914)
..... ....|..+.-. ....+..|+.+|..+.---+.+-.....+.+ ...|+++....+|+ +-+++.+|.++
T Consensus 239 n~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs---LWv~t~~giv~ 313 (671)
T COG3292 239 NWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS---LWVGTYGGIVR 313 (671)
T ss_pred ccCCCCcchheeeeecc--cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC---EeeeccCceEE
Confidence 22111 22334444333 3456777777775543322222111111222 23344444444444 78888777666
Q ss_pred EEE
Q 002511 213 VWD 215 (914)
Q Consensus 213 iwd 215 (914)
+-+
T Consensus 314 ~~~ 316 (671)
T COG3292 314 YLT 316 (671)
T ss_pred Eec
Confidence 543
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=2.1 Score=45.23 Aligned_cols=129 Identities=7% Similarity=-0.017 Sum_probs=80.0
Q ss_pred CCCEEEEEECCCEEEEEECCCC--ee-eEEEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEE---EEeecC
Q 002511 68 RKQWVVAGADDMFIRVYNYNTM--DK-VKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCT---QIFEGH 141 (914)
Q Consensus 68 ~~~~l~~g~~dg~i~vwd~~t~--~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~ 141 (914)
|.+..+.+...|.+.-|-.+.. .. +..-....++|.++.||+|++.|++--.+..|.+++........ ......
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 3333444444455555554322 11 22222346699999999999999999999999999874431111 222233
Q ss_pred cccEEEEEEccCCCCEEEEEeCCCcEEEEECCC-CCCcEEEecCCCCeeEEEEeeCCCc
Q 002511 142 SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGS-PDPNFTLDAHQKGVNCVDYFTGGDK 199 (914)
Q Consensus 142 ~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (914)
+..|...+|+. +.-++..+.. .+-+|-... .+.++..+.+...|+...|+++..-
T Consensus 112 ~~~IlGF~W~~--s~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 112 NANILGFCWTS--STEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred cceeEEEEEec--CeeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 45588999985 4555555543 456665433 2344555678888999999988764
No 467
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.44 E-value=11 Score=39.36 Aligned_cols=232 Identities=12% Similarity=0.088 Sum_probs=115.8
Q ss_pred CCCEEEEEecCCcEEEEeCCC--CceeEEeeecCCCeEEEEEecCCCEEEEEEC-CCEEEEEECCCCee-----------
Q 002511 26 SEPWILASLYSGTVCIWNYQS--QTMAKSFEVTELPVRSAKFVARKQWVVAGAD-DMFIRVYNYNTMDK----------- 91 (914)
Q Consensus 26 ~~~~la~~~~~g~v~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~vwd~~t~~~----------- 91 (914)
++++|+.|+.+| +.+.+... ++..+.+ +..+|+++...+.-+.|++-+. ...++++++.....
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 336899999888 55555554 2333332 4568999999998887776654 44599999843221
Q ss_pred ----eEEEecCCCCEEEEEEeCCC-CEEEEEEcCCeEEEEECCCCceEEEEee-------cCcccEEEEEEccC-CCCEE
Q 002511 92 ----VKVFEAHTDYIRCVAVHPTL-PYVLSSSDDMLIKLWDWEKGWMCTQIFE-------GHSHYVMQVTFNPK-DTNTF 158 (914)
Q Consensus 92 ----~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~p~-~~~~l 158 (914)
....-.|........+.... ..++++....+|.++.+.........+. ....++..+..++. ....+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01111333333333333222 2334445556777776543211111111 11123333333331 24567
Q ss_pred EEEeCCCcEEEEECCC--CCCcE-----EEecCC-CCeeEEEEeeCCCcCEEEEEEcCCeEEEEECCCCceE--EEecCc
Q 002511 159 ASASLDRTIKIWNLGS--PDPNF-----TLDAHQ-KGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCV--QTLEGH 228 (914)
Q Consensus 159 ~~~~~dg~i~vwd~~~--~~~~~-----~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~ 228 (914)
+.|+..+...++++.. ..+.. ...... .++....+ +++ .++.+.++. ....|....... ..+. -
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~---e~Llc~~~~-~v~Vn~~G~~~~r~~~l~-w 242 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD---EFLLCYDEF-GVFVNLYGKRRSRNPILH-W 242 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC---eEEEEECcE-EEEEeCCCCccccceEEE-c
Confidence 7776643344444432 11100 011111 33333333 232 355555444 334454421211 1222 2
Q ss_pred ccceEEEEEeCCCCEEEEEECCCeEEEEeCCCceeEEEeec
Q 002511 229 THNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNY 269 (914)
Q Consensus 229 ~~~v~~i~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 269 (914)
.....++++.. ++|+.-+. ..|.++++.+++.++++..
T Consensus 243 ~~~p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 243 EFMPESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCcccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 33456677764 56776664 4699999999998887764
No 468
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.42 E-value=1.2 Score=48.84 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=41.5
Q ss_pred eeecccCCHHHHHHHHHHc---C--ChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002511 647 ELAIQLGRLEVAQEIATEV---Q--SESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~~---~--~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (914)
..+-+.|.+|.|....++. + =+..+..||.+.-..|++..|+.||.++-.
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 5677889999998887643 2 277889999999999999999999998753
No 469
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.33 E-value=2.6 Score=48.01 Aligned_cols=102 Identities=10% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCCcEEEe-cCCCCeeEEEEeeCCCcCEEEEEEcCCeEEEEECC-----C----CceEEE
Q 002511 155 TNTFASASLDRTIKIWNLGSPDPNFTLD-AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQ-----T----KSCVQT 224 (914)
Q Consensus 155 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~----~~~~~~ 224 (914)
+...++.+...++.|||.+.+.....-. ...+.|..++|...+++..+++.+..+.|.++.-. + ..++..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 3444444445679999998876433322 35788999999988877788888888999988531 1 123333
Q ss_pred e--cCcc-cceEEEEEeCCCCEEEEEECCCeEEEEeC
Q 002511 225 L--EGHT-HNVSAVCFHPELPIIITGSEDGTVRIWHA 258 (914)
Q Consensus 225 ~--~~~~-~~v~~i~~~~~~~~l~~~~~dg~v~iwd~ 258 (914)
+ ..++ ++|.+.+|.++|.+++.+ ++.+.|+|-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 3 2333 679999999999655443 448888874
No 470
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.33 E-value=1.4 Score=52.07 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=48.0
Q ss_pred ecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhh----HHHHHHHcCCc--------chhHHHHHhcCCHH
Q 002511 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEM----AEGCMKQAMDL--------SGLLLLYSSLGDAE 711 (914)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~----A~~~y~~~~d~--------~~l~~l~~~~g~~~ 711 (914)
...+|++++|.+..+.. +++..+..||..+...|+++. |+.+|.++-.. ..+..++...|+.+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34556666666655432 234556666666666666664 56666655322 12333444455544
Q ss_pred HHHHHHHHHHHcCCchH-----HHHHHHHcCCHHHHHHHHHH
Q 002511 712 GISKLASLAKEQGKNNV-----AFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 712 ~~~~~a~~a~~~~~~~~-----a~~~~~~~g~~~~a~~l~~~ 748 (914)
......+.+....-.+. -+.++...|++++|++.|.+
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43333333332222111 12334445666666555543
No 471
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.31 E-value=0.15 Score=41.59 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002511 652 LGRLEVAQEIATEV----Q---SESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (914)
Q Consensus 652 l~~~~~A~~~a~~~----~---~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~ 724 (914)
.|+++.|..+++++ + +...|-.||..+.+.|+++.|.+.+.+ ..... .+ .+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~~-------~~~~---- 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------SN-------PDIH---- 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------CH-------HHHH----
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------CC-------HHHH----
Confidence 46778887777642 2 345788899999999999999996655 10000 00 1111
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002511 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
+ +.+.|++.+|++++|++.|.+
T Consensus 62 -~-l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 -Y-LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -H-HHHHHHHHTT-HHHHHHHHHH
T ss_pred -H-HHHHHHHHhCCHHHHHHHHhc
Confidence 1 235778889999999998875
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=1.2 Score=46.90 Aligned_cols=140 Identities=12% Similarity=0.105 Sum_probs=91.7
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEeCCCC--ceeEEee-ecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE--
Q 002511 19 KSVDLHPSEPWILASLYSGTVCIWNYQSQ--TMAKSFE-VTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK-- 93 (914)
Q Consensus 19 ~~~~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~-- 93 (914)
+.+-|....+.|++. .+|.+.=|-+... ...-++. ...++|.++.||+|.+.||+--.++.|.+++....+...
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 445555545544443 3455666654332 2233333 256799999999999999999999999999984332221
Q ss_pred --EEecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecCcccEEEEEEccCCCCEEEEEe
Q 002511 94 --VFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162 (914)
Q Consensus 94 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~l~~~~ 162 (914)
..+..+..|....|+.+ .-++..+..| +-+|.........+..+.|+..|.-..|.+ +.+.+..++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEeeec
Confidence 22334456899999976 5566666655 677777665555666777888888888888 565554443
No 473
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.21 E-value=0.67 Score=57.59 Aligned_cols=129 Identities=15% Similarity=0.095 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCChhhhhhcc-----cCccc------ceeeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002511 620 NSVARFLESRGMIEEAIEVA-----TDPDY------RFELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~-----~~~~~------~f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (914)
..++..+...|.+++|+... .+|+. ...+....|++++|.++++.+ .++..|..+|..+...|+
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 45566667777777776553 22321 124556778888888887764 346678888888888888
Q ss_pred hhhHHHHHHHcCCc-------chhHHHHHhcCCHHHHHHHHHHHHHcCCc-----hHHHHHHHHcCCHHHHHHHHHH
Q 002511 684 LEMAEGCMKQAMDL-------SGLLLLYSSLGDAEGISKLASLAKEQGKN-----NVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 684 ~~~A~~~y~~~~d~-------~~l~~l~~~~g~~~~~~~~a~~a~~~~~~-----~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
++.|.++|.++-.. ..+..++...|+.+......+.+...... ...+.++...|++++|+++|.+
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 88888888876432 23444555566654444333333222211 1122334445666666666654
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=4.4 Score=38.31 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=92.0
Q ss_pred CCCEEEEEec--CCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEE-EEECCCEEEEEECCCCeeeEEEecCCCCE
Q 002511 26 SEPWILASLY--SGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVV-AGADDMFIRVYNYNTMDKVKVFEAHTDYI 102 (914)
Q Consensus 26 ~~~~la~~~~--~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~vwd~~t~~~~~~~~~~~~~i 102 (914)
+|.++.+.+. ...|++||+.+|+.+.+-+.....+..=-...-|+.+. -...+|.-..+|.++.+.+..+.-... =
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-G 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-G 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-c
Confidence 3445555443 45799999999987766543321121111112233332 234578888999998888777653322 2
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCce---EEEEeecC-cccEEEEEEccCCCCEEEEEeCCCcEEEEECCCCCCc
Q 002511 103 RCVAVHPTLPYVLSSSDDMLIKLWDWEKGWM---CTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPN 178 (914)
Q Consensus 103 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~ 178 (914)
..+ ..|+..|+.++...++..-|.++-.. +.....+. -..+.-+.|- ++...+-.-.+..|...+..+|+.+
T Consensus 134 WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 333 34566677776667777777664321 22222211 1123334444 3445444444445555555555443
Q ss_pred EEE------------ecCCCCeeEEEEeeCCCcCEEEEE
Q 002511 179 FTL------------DAHQKGVNCVDYFTGGDKPYLITG 205 (914)
Q Consensus 179 ~~~------------~~~~~~v~~~~~~~~~~~~~l~~~ 205 (914)
..+ ..+..-.+.+++.|..++ ++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-FLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCe-EEEec
Confidence 322 123345677888887764 55555
No 475
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.09 E-value=14 Score=39.34 Aligned_cols=232 Identities=13% Similarity=0.053 Sum_probs=115.4
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCee---eEEE----ecCCCCEEEEEEeCC---CCEEEEEEcC--------
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKVF----EAHTDYIRCVAVHPT---LPYVLSSSDD-------- 120 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~---~~~~----~~~~~~i~~~~~s~~---~~~l~~~~~d-------- 120 (914)
..+.|+|.|||+.+++ ...|.|++++ ..+.. +..+ .........++++|+ +.+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999976664 5699999999 44444 2222 123456899999994 3455444331
Q ss_pred -CeEEEEECCCC-------ceEEEEeec---CcccEEEEEEccCCCCEEEEEeCC-------------CcEEEEECCCCC
Q 002511 121 -MLIKLWDWEKG-------WMCTQIFEG---HSHYVMQVTFNPKDTNTFASASLD-------------RTIKIWNLGSPD 176 (914)
Q Consensus 121 -g~i~iwd~~~~-------~~~~~~~~~---~~~~i~~~~~~p~~~~~l~~~~~d-------------g~i~vwd~~~~~ 176 (914)
..|.-|....+ ..+...... ..+.-..+.|.| ++.+.++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24444544332 111112222 345567799999 77666655543 234333432210
Q ss_pred ------------CcEEEecCCCCeeEEEEeeCCCcCEEEEEE--cCCeEEEEECCCC-----------------------
Q 002511 177 ------------PNFTLDAHQKGVNCVDYFTGGDKPYLITGS--DDHTAKVWDYQTK----------------------- 219 (914)
Q Consensus 177 ------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~----------------------- 219 (914)
....+...-.....++|.|... .|.++. .++.=.|--+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg--~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG--RLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT--EEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCC--cEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0111111122345788888732 233332 2222222111111
Q ss_pred ------ceEEEecCcccceEEEEEeC-------CCCEEEEEECCCeEEEEeCCCceeE---EEe-ecCCccEEEEEEecC
Q 002511 220 ------SCVQTLEGHTHNVSAVCFHP-------ELPIIITGSEDGTVRIWHATTYRLE---NTL-NYGLERVWAIGYMKS 282 (914)
Q Consensus 220 ------~~~~~~~~~~~~v~~i~~~~-------~~~~l~~~~~dg~v~iwd~~~~~~~---~~~-~~~~~~v~~i~~~~~ 282 (914)
.++..+..| ..+..+.|.. .|.++++.-..+.|....+.....+ ..+ .....++..+++.||
T Consensus 238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 122233323 4566666654 3345555545567777777644322 122 223348999999999
Q ss_pred CCEEEEEecCCeEE
Q 002511 283 SRRIVIGYDEGTIM 296 (914)
Q Consensus 283 ~~~l~~~~~dg~i~ 296 (914)
|.+.++...+|.|.
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 98888877777764
No 476
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.03 E-value=0.5 Score=43.26 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=54.3
Q ss_pred cccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002511 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (914)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~ 724 (914)
.++|++++|...++.. .+...|..+|..+...|+++.|+.+|.++-.. ..++.+....++
T Consensus 35 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg------- 99 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTG------- 99 (144)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHH-------
Confidence 5678888887776642 45778999999999999999999998886332 233333333332
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002511 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
.++..+|++++|+..|.+
T Consensus 100 ------~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 100 ------VCLKMMGEPGLAREAFQT 117 (144)
T ss_pred ------HHHHHcCCHHHHHHHHHH
Confidence 355577888888887764
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.01 E-value=4.9 Score=35.30 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=72.0
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCce-------EEEEeecCcccEEEEEEcc---C-CCCEEEEEeCCCcEEEEEC
Q 002511 104 CVAVHPTLPYVLSSSDDMLIKLWDWEKGWM-------CTQIFEGHSHYVMQVTFNP---K-DTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 104 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~~p---~-~~~~l~~~~~dg~i~vwd~ 172 (914)
.-.|....+.|+.++.-|.|.|++...... ....+ .-...|++++-.| . +...|+.|+ ..+|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 446666677888888889999998664311 11222 2344566665433 2 345666665 568999999
Q ss_pred CCCCCcEEEecCCCCeeEEEEeeCCC--cCEEEEEEcCCeEEEEECCCCceEEEe
Q 002511 173 GSPDPNFTLDAHQKGVNCVDYFTGGD--KPYLITGSDDHTAKVWDYQTKSCVQTL 225 (914)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~ 225 (914)
....-++... -..+++++.+-.-+. .+++++| .+..|.-||....+..++.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 8776555433 447788887754332 3344444 4667888887655554443
No 478
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=0.52 Score=45.85 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=68.8
Q ss_pred HHHHHccCHHHHhhhcC----CCCcchH-H-HHHHHHHhCCChhhhhhc-----ccCccc------ceeeecccCCHHHH
Q 002511 596 KTLVMRGDLERANEILP----SIPKEHH-N-SVARFLESRGMIEEAIEV-----ATDPDY------RFELAIQLGRLEVA 658 (914)
Q Consensus 596 ~~~~~~~~~~~a~~~l~----~i~~~~~-~-~~~~~~~~~~~~~~a~~~-----~~~~~~------~f~~~l~l~~~~~A 658 (914)
-.++..+....|...+. +.|.+.+ . .-+-+++..|.+++|+++ ..||.+ +.-+....|+=-+|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 34444555555543322 2333333 2 225677999999999876 355533 34566677777788
Q ss_pred HHHHH-----HcCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 659 QEIAT-----EVQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 659 ~~~a~-----~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
++-.. .+.+.+.|..||+.++..++|+.|.-||..+-
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 77664 46789999999999999999999999999864
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=12 Score=37.64 Aligned_cols=192 Identities=9% Similarity=0.044 Sum_probs=105.2
Q ss_pred EEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCee---eEE
Q 002511 18 VKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDK---VKV 94 (914)
Q Consensus 18 v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~---~~~ 94 (914)
+..+.++ +++...+..+.-++|.|+.+......+..-+..=..-.|.-.|++..++.-+.-+.+.|+.+... ...
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 3444454 45666666666799999887543332222111112334455688888887554566788765432 233
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCCCceEEEEeecC-cccEEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 002511 95 FEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWMCTQIFEGH-SHYVMQVTFNPKDTNTFASASLDRTIKIWNLG 173 (914)
Q Consensus 95 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 173 (914)
.......-..++.| |++-..+..|+-+.+.|+.....+...-.-. ...+.++..++ + +....-.+.-+.+-|..
T Consensus 167 ya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd-n--r~y~vvy~egvlivd~s 241 (370)
T COG5276 167 YALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD-N--RAYLVVYDEGVLIVDVS 241 (370)
T ss_pred eccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC-C--eeEEEEcccceEEEecC
Confidence 33333334556665 6777788889999999998763333222111 22567777665 3 33333345567788887
Q ss_pred CCCCcEEEecC-CCCeeEE-EEeeCCCcCEEEEEEcCCeEEEEECCC
Q 002511 174 SPDPNFTLDAH-QKGVNCV-DYFTGGDKPYLITGSDDHTAKVWDYQT 218 (914)
Q Consensus 174 ~~~~~~~~~~~-~~~v~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~ 218 (914)
+.+....+... ...+.++ .+.-.++ +......+..+.+-|..+
T Consensus 242 ~~ssp~~~gsyet~~p~~~s~v~Vs~~--~~Yvadga~gl~~idisn 286 (370)
T COG5276 242 GPSSPTVFGSYETSNPVSISTVPVSGE--YAYVADGAKGLPIIDISN 286 (370)
T ss_pred CCCCceEeeccccCCcccccceecccc--eeeeeccccCceeEeccC
Confidence 77655544221 1222222 2222333 455555555566666654
No 480
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.52 E-value=1.4 Score=43.77 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=34.3
Q ss_pred eecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 648 LAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 648 ~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
.+...|++++|.+..++. .+...|..+|..+...|+++.|++.|.++-
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345567777777666532 345677888888888888888888888764
No 481
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.42 E-value=4.5 Score=46.17 Aligned_cols=111 Identities=12% Similarity=0.093 Sum_probs=70.8
Q ss_pred CeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeEEEe-cCCCCEEEEEEe--CCCCEEEEEEcCCeEEEEECC-----C
Q 002511 59 PVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFE-AHTDYIRCVAVH--PTLPYVLSSSDDMLIKLWDWE-----K 130 (914)
Q Consensus 59 ~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~~~~-~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~-----~ 130 (914)
...-+.-|.-++.-++-+....+.|||.+.+.....-. ...+.|..+.|. |+|+.+++.+....|.+|.-. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555555555555556689999998876433222 356789999996 578889888888999998531 1
Q ss_pred ---CceEEEE--eecCc-ccEEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 002511 131 ---GWMCTQI--FEGHS-HYVMQVTFNPKDTNTFASASLDRTIKIWNL 172 (914)
Q Consensus 131 ---~~~~~~~--~~~~~-~~i~~~~~~p~~~~~l~~~~~dg~i~vwd~ 172 (914)
.+...+. +..++ ++|.+..|.+ ++. +++|+ +..+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~-LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGT-LVVGS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEec-CCe-EEEEe-CCEEEEECC
Confidence 1112221 22333 6789999997 554 44444 357788764
No 482
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.26 E-value=25 Score=40.16 Aligned_cols=283 Identities=13% Similarity=0.173 Sum_probs=132.7
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCcEEEEeCCC----C-ceeEEee---ecCCCeEEEEEec-----CCCEEEEE--ECCC
Q 002511 15 SERVKSVDLHPSEPWILASLYSGTVCIWNYQS----Q-TMAKSFE---VTELPVRSAKFVA-----RKQWVVAG--ADDM 79 (914)
Q Consensus 15 ~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~----~-~~~~~~~---~~~~~v~~~~~s~-----~~~~l~~g--~~dg 79 (914)
...-..++.+|.|+.++++...|.+.||-++. + .....+. .....|..++|-. +...|++- ...+
T Consensus 43 ~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 43 SQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp -TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred hcCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 34466799999999999999999999998877 1 1111111 1256788899885 23344432 2222
Q ss_pred --EEEEEECCCCeeeEE----------E-ecCCCCEEEEEEeCCCCEEEEEEcCCeEEEEECCC--C-ceEEEEee---c
Q 002511 80 --FIRVYNYNTMDKVKV----------F-EAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEK--G-WMCTQIFE---G 140 (914)
Q Consensus 80 --~i~vwd~~t~~~~~~----------~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~---~ 140 (914)
.+..|.+.....+.. + ..+..+..-+..-.....+++++. +.+.+-+... + ......-. .
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~~~~~ 201 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-NIIIYKNHLIGSGDYSFLSIPSPPSS 201 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-SEEEEEE------TTEEEEE--H-HH
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-EEEEEecccccccccccccccCCccC
Confidence 344444322221111 1 011112222222222233445444 3333332211 1 11111111 1
Q ss_pred CcccEEEEEE------ccCCCCEEEEEeCCCcEEEEECCCCCC--cEEEecC-CCCeeEEEEeeCCCcCEEEEEEcCC--
Q 002511 141 HSHYVMQVTF------NPKDTNTFASASLDRTIKIWNLGSPDP--NFTLDAH-QKGVNCVDYFTGGDKPYLITGSDDH-- 209 (914)
Q Consensus 141 ~~~~i~~~~~------~p~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg-- 209 (914)
...-+.+..+ ...++..++.+..+|.+....+..... ....-+. .....++.+..++ ..+++.|+.-|
T Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs~~gds 280 (504)
T PF10433_consen 202 SSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-GDYLFVGSEFGDS 280 (504)
T ss_dssp HTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT---EEEEEESSS-E
T ss_pred CCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEEecCCc
Confidence 1222344333 334678899999999998887754331 1111122 4455677777666 33788887644
Q ss_pred eEEEEECCCCceEEEecCcccceEEEEEeCC----CC------EEEEEE---CCCeEEEEeCCCcee---EEEeecC-Cc
Q 002511 210 TAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE----LP------IIITGS---EDGTVRIWHATTYRL---ENTLNYG-LE 272 (914)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~------~l~~~~---~dg~v~iwd~~~~~~---~~~~~~~-~~ 272 (914)
.+..|....-+.+.++. .-++|..+++.+. .. .|++++ .+|.+++..-.-+-. ....... -.
T Consensus 281 ~l~~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~ 359 (504)
T PF10433_consen 281 QLLQISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVT 359 (504)
T ss_dssp EEEEEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEE
T ss_pred EEEEEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCce
Confidence 45555544445555565 4567888888532 11 455443 578898885321111 1111111 24
Q ss_pred cEEEEEEec-CCCEEEEEecCCeEEEEcC
Q 002511 273 RVWAIGYMK-SSRRIVIGYDEGTIMVKIG 300 (914)
Q Consensus 273 ~v~~i~~~~-~~~~l~~~~~dg~i~i~~~ 300 (914)
.+|.+.... +..+|+++..+.+..+...
T Consensus 360 ~iW~l~~~~~~~~~lv~S~~~~T~vl~~~ 388 (504)
T PF10433_consen 360 GIWTLKLSSSDHSYLVLSFPNETRVLQIS 388 (504)
T ss_dssp EEEEE-SSSSSBSEEEEEESSEEEEEEES
T ss_pred EEEEeeecCCCceEEEEEcCCceEEEEEe
Confidence 556665432 2578888888888877764
No 483
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.10 E-value=1.3 Score=55.03 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCChhhhhhccc-----Cccc---c---eeeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCC
Q 002511 620 NSVARFLESRGMIEEAIEVAT-----DPDY---R---FELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGK 683 (914)
Q Consensus 620 ~~~~~~~~~~~~~~~a~~~~~-----~~~~---~---f~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~ 683 (914)
..++..+...|..++|..... +|.. . -..+...|++++|.++++.. .++..|..+|..+...|+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 344555566666666654421 1211 1 13455678888888887654 346678888888888888
Q ss_pred hhhHHHHHHHc
Q 002511 684 LEMAEGCMKQA 694 (914)
Q Consensus 684 ~~~A~~~y~~~ 694 (914)
++.|+.+|.++
T Consensus 617 ~~~A~~~~~~~ 627 (899)
T TIGR02917 617 LNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.04 E-value=32 Score=40.98 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCCEEEEEEcCCC------CEEEEEecCCcEEEEeCCCCceeEEeee--cCCCeEEEEEec---CC------CEEEEEEC
Q 002511 15 SERVKSVDLHPSE------PWILASLYSGTVCIWNYQSQTMAKSFEV--TELPVRSAKFVA---RK------QWVVAGAD 77 (914)
Q Consensus 15 ~~~v~~~~~sp~~------~~la~~~~~g~v~iwd~~~~~~~~~~~~--~~~~v~~~~~s~---~~------~~l~~g~~ 77 (914)
+..|.|+++.++. ++++.++.++.++++.+.....+..+.. -..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568899998875 4799999999999999887766666543 344555555543 23 24567777
Q ss_pred CCEEEEE
Q 002511 78 DMFIRVY 84 (914)
Q Consensus 78 dg~i~vw 84 (914)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765544
No 485
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.90 E-value=2.7 Score=51.51 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred ccCCHHHHHHHHHHcC----ChHHHHHHHHHHHHcCChhhHHHHHHHcCC
Q 002511 651 QLGRLEVAQEIATEVQ----SESKWKQLGELAMSTGKLEMAEGCMKQAMD 696 (914)
Q Consensus 651 ~l~~~~~A~~~a~~~~----~~~~w~~la~~al~~~~~~~A~~~y~~~~d 696 (914)
..|++++|....+++. ....|..+|..++..|+++.|+.+|.++-.
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777766432 234567777777888888888887766543
No 486
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.90 E-value=0.025 Score=58.98 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred eeecccCCHHHHHHHHHH-------cCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 647 ELAIQLGRLEVAQEIATE-------VQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 647 ~~~l~l~~~~~A~~~a~~-------~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
.+....|++++|+++.+. .+++..|+.+|+.+...++++.|+++|.++-
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~ 71 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL 71 (280)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456678888888888842 2356799999999999999999999998763
No 487
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.85 E-value=0.21 Score=49.91 Aligned_cols=80 Identities=26% Similarity=0.292 Sum_probs=59.0
Q ss_pred HHHHHhCCChhhhhhcc-cCccc---ceeeecccCCHHHHHHHHHH---cCC--hHHHHHHHHHHHHcCChhhHHHHHHH
Q 002511 623 ARFLESRGMIEEAIEVA-TDPDY---RFELAIQLGRLEVAQEIATE---VQS--ESKWKQLGELAMSTGKLEMAEGCMKQ 693 (914)
Q Consensus 623 ~~~~~~~~~~~~a~~~~-~~~~~---~f~~~l~l~~~~~A~~~a~~---~~~--~~~w~~la~~al~~~~~~~A~~~y~~ 693 (914)
.+|.+..+.+.+|+++. +++-. +-..+.+||.++.|++-|+. +++ .+.|-+||.+++..|+++.|+++|++
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 35566666677777664 33322 22567899999999999874 333 45788899999999999999999999
Q ss_pred cCCcchhHH
Q 002511 694 AMDLSGLLL 702 (914)
Q Consensus 694 ~~d~~~l~~ 702 (914)
+-+++---.
T Consensus 175 aLeldP~Ne 183 (304)
T KOG0553|consen 175 ALELDPDNE 183 (304)
T ss_pred hhccCCCcH
Confidence 987765333
No 488
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.77 E-value=0.24 Score=37.86 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=38.3
Q ss_pred ecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002511 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (914)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (914)
+++.|++++|.++.+.+ ++...|..||..+...|+++.|+..|.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999988764 34779999999999999999999988875
No 489
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.73 E-value=0.79 Score=31.08 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCC---CEEEEEecCCcEEEEeCCC
Q 002511 16 ERVKSVDLHPSE---PWILASLYSGTVCIWNYQS 46 (914)
Q Consensus 16 ~~v~~~~~sp~~---~~la~~~~~g~v~iwd~~~ 46 (914)
+.|.++.|||.. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 4888888899999999985
No 490
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.69 E-value=0.77 Score=50.53 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHccCHHHHhhhcCCCCcc----hH--HHHHHHHHhCCChhhhhhcc-----cCcccc-------eeeecccCCHHH
Q 002511 596 KTLVMRGDLERANEILPSIPKE----HH--NSVARFLESRGMIEEAIEVA-----TDPDYR-------FELAIQLGRLEV 657 (914)
Q Consensus 596 ~~~~~~~~~~~a~~~l~~i~~~----~~--~~~~~~~~~~~~~~~a~~~~-----~~~~~~-------f~~~l~l~~~~~ 657 (914)
-.++..|++..|.+.+..-+.. .. -..+..-...|..+.|.... .+|+.. .++++..|+++.
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 3555578888877665433222 11 11233335566665554332 233332 468889999999
Q ss_pred HHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 658 AQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 658 A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
|.+.++.. +++...+.+++.++..|+++.|.+.+.+..
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99988754 457788999999999999999997777665
No 491
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.47 E-value=0.25 Score=32.42 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHH
Q 002511 671 WKQLGELAMSTGKLEMAEGCMKQ 693 (914)
Q Consensus 671 w~~la~~al~~~~~~~A~~~y~~ 693 (914)
|..||..+...|+++.|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 67899999999999999999998
No 492
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=91.32 E-value=2.1 Score=39.08 Aligned_cols=92 Identities=10% Similarity=-0.209 Sum_probs=59.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcCCchHHHHHHHHcC-
Q 002511 659 QEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLG- 737 (914)
Q Consensus 659 ~~~a~~~~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~~~~~a~~~~~~~g- 737 (914)
++-+..++ |..|..+|..+...|+++.|.++|.++-.. ...+..-...++.+....|++..|..+|...-
T Consensus 16 ~~~al~~~-p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 16 LKQLLSVD-PETVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444 334778999999999999999999985322 23445556667777777777777776665431
Q ss_pred ----C---HHHHHHHHHHCCCchHHHHHH
Q 002511 738 ----K---LEDCLQLLVESNRIPEAALMA 759 (914)
Q Consensus 738 ----~---~~~a~~l~~~~~~~~~A~~~a 759 (914)
+ .-.....|...|++++|+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 133334566777787777443
No 493
>PRK15331 chaperone protein SicA; Provisional
Probab=91.30 E-value=0.79 Score=41.95 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=55.8
Q ss_pred cccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcchhHHHHHhcCCHHHHHHHHHHHHHcC
Q 002511 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLSGLLLLYSSLGDAEGISKLASLAKEQG 724 (914)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~g~~~~~~~~a~~a~~~~ 724 (914)
.+.|++++|..+-+.+ -++.-|.-||..+-..++++.|+.+|..+..++ .+|+-
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--------~~dp~------------- 106 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--------KNDYR------------- 106 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cCCCC-------------
Confidence 4567777777765532 357789999999999999999999888754321 12211
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHH
Q 002511 725 KNNVAFLCLFMLGKLEDCLQLLVE 748 (914)
Q Consensus 725 ~~~~a~~~~~~~g~~~~a~~l~~~ 748 (914)
-.--++.|++.+|+.++|.+.|..
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~ 130 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFEL 130 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHH
Confidence 134577889999999999886653
No 494
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.28 E-value=1.9 Score=47.67 Aligned_cols=208 Identities=19% Similarity=0.287 Sum_probs=113.2
Q ss_pred hcCCCCcchHHHH----HHHHHhCCChhhhhhcc-----cCccc---ceeeecccCCHHHHHHHHHHcCC----------
Q 002511 610 ILPSIPKEHHNSV----ARFLESRGMIEEAIEVA-----TDPDY---RFELAIQLGRLEVAQEIATEVQS---------- 667 (914)
Q Consensus 610 ~l~~i~~~~~~~~----~~~~~~~~~~~~a~~~~-----~~~~~---~f~~~l~l~~~~~A~~~a~~~~~---------- 667 (914)
.|..+|..+|.+| .+|++..+..+-++.+- -.|.. -.+.....++|++|-+-...+-+
T Consensus 128 ALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gk 207 (835)
T KOG2047|consen 128 ALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGK 207 (835)
T ss_pred HHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhccc
Confidence 3445677777444 67888888887766552 22332 34667778888887665432211
Q ss_pred ----------------------------------------hHHHHHHHHHHHHcCChhhHHHHHHHc-------CCcchh
Q 002511 668 ----------------------------------------ESKWKQLGELAMSTGKLEMAEGCMKQA-------MDLSGL 700 (914)
Q Consensus 668 ----------------------------------------~~~w~~la~~al~~~~~~~A~~~y~~~-------~d~~~l 700 (914)
..+|-.||+++...|.|+.|...|..+ +|+..+
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHH
Confidence 228999999999999999999999876 466666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----CchHHHHHH----HHcCCHHHHHHHHHHCCCchHHHHHHHhc-CCChHHHH
Q 002511 701 LLLYSSLGDAEGISKLASLAKEQG-----KNNVAFLCL----FMLGKLEDCLQLLVESNRIPEAALMARSY-LPSKVSEI 770 (914)
Q Consensus 701 ~~l~~~~g~~~~~~~~a~~a~~~~-----~~~~a~~~~----~~~g~~~~a~~l~~~~~~~~~A~~~a~~~-~~~~~~~~ 770 (914)
.-.|..-... ++....+++...+ ...+-.+++ +..+..--.-+.+++.+--.---=+.|.- ......+.
T Consensus 288 fd~Ya~FEE~-~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~ 366 (835)
T KOG2047|consen 288 FDAYAQFEES-CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHH-HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHH
Confidence 5555543321 1222222221111 111111111 11122222222233222111111111111 11334555
Q ss_pred HHHHHHhhhhcChhhhhhcCCCccCCCccccHHHHHHHHHHHhhccCCCCCCc
Q 002511 771 VAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATRGVHPPAE 823 (914)
Q Consensus 771 ~~~~~~~L~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 823 (914)
..-|.+++...+++.| |+..-.|+-.|++.-+.-+.+..|+...+.|-
T Consensus 367 i~tyteAv~~vdP~ka-----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKA-----VGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHHHccCcccC-----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 6667777777766654 55666778888888777777777766665553
No 495
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.26 E-value=22 Score=44.73 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCcEEEEeCCCCceeEEeeecCCCeEEEEEecCCCEEEEEECCCEEEEEECCCCeeeE
Q 002511 14 RSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVK 93 (914)
Q Consensus 14 h~~~v~~~~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~vwd~~t~~~~~ 93 (914)
|..-++.|.-+|+|.++=. .++.++.||.........-.....++..+.-.-||+..+ =+.+. +-|+.++....
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~---l~nLSs~~~~~ 434 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDT---LVNLSSGQMSE 434 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCc---eeecCCCCcch
Confidence 4555667777777776544 467788888665532210011223444444444554433 11111 23444333211
Q ss_pred EEecCCCCEEEEEEeCCCCE-EEEEEcCCeEEEEECCCC-----ceE--EEEeecCcccEEEEEEccCCCCEEEEEeCCC
Q 002511 94 VFEAHTDYIRCVAVHPTLPY-VLSSSDDMLIKLWDWEKG-----WMC--TQIFEGHSHYVMQVTFNPKDTNTFASASLDR 165 (914)
Q Consensus 94 ~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~-----~~~--~~~~~~~~~~i~~~~~~p~~~~~l~~~~~dg 165 (914)
. .-..|.+...+++|.. ++++.....+.+|++... ..+ .-.+.+......++.+++ ..|+++..+|
T Consensus 435 ~---~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~---drLFvADseG 508 (1774)
T PF11725_consen 435 A---EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSN---DRLFVADSEG 508 (1774)
T ss_pred h---hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecC---CeEEEEeCCC
Confidence 1 1245778888999987 556666667799988743 111 222333334667788876 3688888899
Q ss_pred cEEEEECCC
Q 002511 166 TIKIWNLGS 174 (914)
Q Consensus 166 ~i~vwd~~~ 174 (914)
.++.=++..
T Consensus 509 kLYsa~l~~ 517 (1774)
T PF11725_consen 509 KLYSADLPA 517 (1774)
T ss_pred CEEeccccc
Confidence 988887754
No 496
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.11 E-value=1.8 Score=55.06 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=54.2
Q ss_pred HHHHHhCCChhhhhhccc-Cccc---ce---eeecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHH
Q 002511 623 ARFLESRGMIEEAIEVAT-DPDY---RF---ELAIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGC 690 (914)
Q Consensus 623 ~~~~~~~~~~~~a~~~~~-~~~~---~f---~~~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~ 690 (914)
+..+...|..++|..+.. .|.. .+ .++.+.|++++|.+..+.. ++...|..||..+...|+++.|+++
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344556777777766542 2222 11 4567889999999998753 4577899999999999999999999
Q ss_pred HHHcC
Q 002511 691 MKQAM 695 (914)
Q Consensus 691 y~~~~ 695 (914)
|.++-
T Consensus 660 l~~ll 664 (1157)
T PRK11447 660 LAKLP 664 (1157)
T ss_pred HHHHh
Confidence 99764
No 497
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.11 E-value=1.8 Score=52.90 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHc----CChHHHHHHHHHHHHcCChhhHHHHHHHc
Q 002511 653 GRLEVAQEIATEV----QSESKWKQLGELAMSTGKLEMAEGCMKQA 694 (914)
Q Consensus 653 ~~~~~A~~~a~~~----~~~~~w~~la~~al~~~~~~~A~~~y~~~ 694 (914)
|++++|.+..++. ++...|..+|..+.+.|+++.|+.+|.++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666555432 23455666666666666666666666654
No 498
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=91.10 E-value=1.5 Score=43.03 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=59.3
Q ss_pred ecccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcCCcc--------hhHHHHHhcCCHHHHHH
Q 002511 649 AIQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAMDLS--------GLLLLYSSLGDAEGISK 715 (914)
Q Consensus 649 ~l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~d~~--------~l~~l~~~~g~~~~~~~ 715 (914)
.+..|++.+|...+++. ++.+.|.-+|-.+.+.|+++.|...|.++-++. .+...|...||.+.-+.
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 36789999999888865 346688899999999999999999999987553 55566777777776666
Q ss_pred HHHHHHHcCC
Q 002511 716 LASLAKEQGK 725 (914)
Q Consensus 716 ~a~~a~~~~~ 725 (914)
+-.-+...+.
T Consensus 190 lll~a~l~~~ 199 (257)
T COG5010 190 LLLPAYLSPA 199 (257)
T ss_pred HHHHHHhCCC
Confidence 6666655554
No 499
>PRK11189 lipoprotein NlpI; Provisional
Probab=91.09 E-value=1.4 Score=46.21 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.6
Q ss_pred ccCCHHHHHHHHHH-----cCChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 651 QLGRLEVAQEIATE-----VQSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 651 ~l~~~~~A~~~a~~-----~~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
.+|++++|....++ -+.+..|..+|..+...|+++.|+.+|.++-
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555443332 2456788889999999999999999888874
No 500
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.90 E-value=0.37 Score=37.19 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHc-----CChHHHHHHHHHHHHcCChhhHHHHHHHcC
Q 002511 650 IQLGRLEVAQEIATEV-----QSESKWKQLGELAMSTGKLEMAEGCMKQAM 695 (914)
Q Consensus 650 l~l~~~~~A~~~a~~~-----~~~~~w~~la~~al~~~~~~~A~~~y~~~~ 695 (914)
++.|++++|.++.+.. ++...+-.||..++..|+++.|++.+.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999988753 467889999999999999999999887653
Done!