Query 002512
Match_columns 914
No_of_seqs 700 out of 4097
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 17:29:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002512.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1229-1233//hhsearch_pdb/002512hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gt4_A Tyrosine-protein kinase 1.0 1 1 428.1 14.1 267 507-791 19-303 (308)
2 4aoj_A High affinity nerve gro 1.0 1 1 421.9 18.0 262 514-794 41-319 (329)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 421.3 11.7 263 514-795 13-290 (299)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 417.9 19.7 264 511-793 33-299 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 407.5 16.1 270 509-795 59-348 (353)
6 4b9d_A Serine/threonine-protei 1.0 1 1 397.7 16.1 250 516-787 26-276 (350)
7 3fpq_A Serine/threonine-protei 1.0 1 1 391.9 20.2 248 517-787 29-282 (290)
8 3hmm_A TGF-beta receptor type- 1.0 1 1 391.6 21.0 267 515-795 4-298 (303)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 390.4 22.6 255 516-797 60-319 (336)
10 4fie_A Serine/threonine-protei 1.0 1 1 389.7 21.7 247 516-787 153-400 (423)
No 1
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=428.09 Aligned_cols=267 Identities=26% Similarity=0.416 Sum_probs=218.5
Q ss_pred CHHHHHHHHCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECE
Q ss_conf 989999985131210286653499999980------89599999922036332064989999999981069852321020
Q 002512 507 TYEELERATGGFKEEVGKGSFSCVYKGVLK------DGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGY 580 (914)
Q Consensus 507 ~~~el~~~t~~f~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~ 580 (914)
.+.|+...+.+|.++||+|+||.||+|.+. +++.||||++.... .....++|.+|+.++++++|||||+++|+
T Consensus 19 ~~~ei~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~ 97 (308)
T 4gt4_A 19 KLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA-EGPLREEFRHEAMLRARLQHPNVVCLLGV 97 (308)
T ss_dssp CCCBCCGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-C-CC-CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred CCCCCCHHHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 72228788885866913588848999998577658888699999988014-96899999999999985899898773649
Q ss_pred EECCCEEEEEEEECCCCCHHHHHHCCCC-----------CHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 1118768999965799997786303952-----------00013555668989999999999964169998220588764
Q 002512 581 CEEGRERLLVYEFMAHGSLHQHLHGKSK-----------ALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSS 649 (914)
Q Consensus 581 ~~~~~~~~LV~Ey~~~gsL~~~l~~~~~-----------~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~ 649 (914)
|.+.+..+|||||+++|+|.++|+...+ .....++|..+++|+.|||+||+|||+++ ||||||||+
T Consensus 98 ~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLK~~ 174 (308)
T 4gt4_A 98 VTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH---VVHKDLATR 174 (308)
T ss_dssp ECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGG
T ss_pred EEECCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCC
T ss_conf 98899889999818999499999862765433332211112468999999999999999999998689---977873623
Q ss_pred CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 26874999499943587545999999997557888677669452301899982007889999999990-99886543456
Q 002512 650 NILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILS-GRKAIDMQFEE 728 (914)
Q Consensus 650 NILl~~~~~~kI~DFGla~~~~~~~~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELlt-G~~p~~~~~~~ 728 (914)
||||++++.+||+|||+++...............||+.|||||++....++.++|||||||+||||+| |+.||.....
T Consensus 175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~- 253 (308)
T 4gt4_A 175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN- 253 (308)
T ss_dssp GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-
T ss_pred CEEECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-
T ss_conf 0688799978988760202336777404734512577656989982799996300015799999999689999999899-
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 417897886652298432236534899998899999999998110199999997899999999
Q 002512 729 GNIVEWAVPLIKSGDITAILDPVLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALER 791 (914)
Q Consensus 729 ~~l~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~ 791 (914)
..+ ...+..+.. .+.+.+++..+.+|+.+||+.+|++||||.||++.|+.
T Consensus 254 ~~~----~~~i~~~~~---------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 254 QDV----VEMIRNRQV---------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp HHH----HHHHHTTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred HHH----HHHHHCCCC---------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 999----999981998---------99962036999999999758796579299999999985
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=421.88 Aligned_cols=262 Identities=27% Similarity=0.437 Sum_probs=215.4
Q ss_pred HHCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEE
Q ss_conf 85131210286653499999980------895999999220363320649899999999810698523210201118768
Q 002512 514 ATGGFKEEVGKGSFSCVYKGVLK------DGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRER 587 (914)
Q Consensus 514 ~t~~f~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~ 587 (914)
....+.++||+|+||.||+|+++ +++.||||++... .....++|.+|+++|++++|||||+++|+|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 992887797147784899899878665778969999997757--979999999999999858998999698999989989
Q ss_pred EEEEEECCCCCHHHHHHCCCCC----------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCC
Q ss_conf 9999657999977863039520----------001355566898999999999996416999822058876426874999
Q 002512 588 LLVYEFMAHGSLHQHLHGKSKA----------LKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEH 657 (914)
Q Consensus 588 ~LV~Ey~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~ 657 (914)
+|||||+++|+|.++|+..... ....++|..++.|+.||++||+|||+.+ |+||||||+||||++++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCCGGGEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC---EECCCCCHHHEEECCCC
T ss_conf 999982799939999986075410012211245788999999999999999999984088---42266667648988999
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHH
Q ss_conf 499943587545999999997557888677669452301899982007889999999990-9988654345641789788
Q 002512 658 NARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILS-GRKAIDMQFEEGNIVEWAV 736 (914)
Q Consensus 658 ~~kI~DFGla~~~~~~~~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELlt-G~~p~~~~~~~~~l~~~~~ 736 (914)
.+||+|||+++...............||+.|||||++.+..++.++|||||||+||||+| |+.||...... .+ .
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~-~~----~ 270 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT-EA----I 270 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH-HH----H
T ss_pred CEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH-HH----H
T ss_conf 689766603336567875300476455656658265447999966300105789999982899999998999-99----9
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6652298432236534899998899999999998110199999997899999999999
Q 002512 737 PLIKSGDITAILDPVLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERALA 794 (914)
Q Consensus 737 ~~~~~~~~~~i~d~~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l~ 794 (914)
..+..+.. .+.+...+.++.+|+.+||+.||++||||.||++.|+.+..
T Consensus 271 ~~i~~g~~---------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~ 319 (329)
T 4aoj_A 271 DCITQGRE---------LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQ 319 (329)
T ss_dssp HHHHHTCC---------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCC---------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 99980898---------99864463999999999747596579299999999998745
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=421.33 Aligned_cols=263 Identities=27% Similarity=0.436 Sum_probs=214.3
Q ss_pred HHCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEE
Q ss_conf 85131210286653499999980------895999999220363320649899999999810698523210201118768
Q 002512 514 ATGGFKEEVGKGSFSCVYKGVLK------DGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRER 587 (914)
Q Consensus 514 ~t~~f~~~lG~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~ 587 (914)
....+.++||+|+||.||+|++. ++..||||++.... ....++|.+|+++|++++|||||+++|+|.+.+..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~--~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS--DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC--HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCC--HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 8929824982078829999998776667788799999967778--58999999999999858998886287999569989
Q ss_pred EEEEEECCCCCHHHHHHCCCC--------CHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCCCE
Q ss_conf 999965799997786303952--------000135556689899999999999641699982205887642687499949
Q 002512 588 LLVYEFMAHGSLHQHLHGKSK--------ALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNA 659 (914)
Q Consensus 588 ~LV~Ey~~~gsL~~~l~~~~~--------~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~~~ 659 (914)
+|||||+++|+|.++|+.... .....++|..++.|+.||++||+|||+++ |+||||||+||||++++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~---iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGGGEEECGGGCE
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCE
T ss_conf 9999858999689999860864211123577788999999999999999999997599---0467657763898799868
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9943587545999999997557888677669452301899982007889999999990-998865434564178978866
Q 002512 660 RVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILS-GRKAIDMQFEEGNIVEWAVPL 738 (914)
Q Consensus 660 kI~DFGla~~~~~~~~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELlt-G~~p~~~~~~~~~l~~~~~~~ 738 (914)
||+|||+|+...............||+.|||||++....++.++|||||||+||||+| |+.||...... .+ ...
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~-~~----~~~ 242 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN-EV----IEC 242 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-HH----HHH
T ss_pred EECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HH----HHH
T ss_conf 9887300100678874166475134701038898707999703667788999999980899999998999-99----999
Q ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 522984322365348999988999999999981101999999978999999999998
Q 002512 739 IKSGDITAILDPVLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERALAQ 795 (914)
Q Consensus 739 ~~~~~~~~i~d~~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l~~ 795 (914)
+..+... +.+...+.++.+|+.+||+.||++||||.+|.+.|+++...
T Consensus 243 i~~~~~~---------~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 243 ITQGRVL---------QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHTCCC---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHCCCCC---------CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 9808988---------99741439999999997687966892999999999877763
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=417.90 Aligned_cols=264 Identities=28% Similarity=0.499 Sum_probs=210.4
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEEEEE
Q ss_conf 99985131210286653499999980895999999220363320649899999999810698523210201118768999
Q 002512 511 LERATGGFKEEVGKGSFSCVYKGVLKDGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRERLLV 590 (914)
Q Consensus 511 l~~~t~~f~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV 590 (914)
+......|.++||+|+||.||+|+++ ..||||++..........++|.+|+.++++++|||||++++++.+ +..+||
T Consensus 33 i~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iV 109 (307)
T 3omv_A 33 IEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIV 109 (307)
T ss_dssp CCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEE
T ss_pred ECHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEE
T ss_conf 74799498449820888689999989--968999997268999999999999999985899887469999978-958999
Q ss_pred EEECCCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCCCEEEEECCCCCCC
Q ss_conf 96579999778630395200013555668989999999999964169998220588764268749994999435875459
Q 002512 591 YEFMAHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLG 670 (914)
Q Consensus 591 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~~~kI~DFGla~~~ 670 (914)
|||+++|+|.++|+... ..++|..++.|+.|||.||+|||+++ ||||||||+||||++++.+||+|||+|+..
T Consensus 110 mEy~~gGsL~~~l~~~~----~~l~~~~~~~i~~qia~gL~yLH~~~---IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 110 TQWCEGSSLYKHLHVQE----TKFQMFQLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp EECCSSCBHHHHHHTSC----CCCCHHHHHHHHHHHHHHHHHHHHTT---CBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred EECCCCCCHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCHHHEEECCCCCEEEEECCCCEEC
T ss_conf 97489987889875248----99999999999999999999997799---527855789978889990899441575424
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99999997557888677669452301---899982007889999999990998865434564178978866522984322
Q 002512 671 PADSSSPLAELPAGTLGYLDPEYYRL---HYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVEWAVPLIKSGDITAI 747 (914)
Q Consensus 671 ~~~~~~~~~~~~~Gt~~Y~aPE~l~~---~~~s~ksDVySlGviL~ELltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~i 747 (914)
.............||+.|||||++.. ..++.++|||||||+||||+||+.||........+. ..+..+...
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~----~~~~~~~~~-- 256 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII----FMVGRGYAS-- 256 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH----HHHHTTCCC--
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH----HHHHCCCCC--
T ss_conf 66776403156446877249878614689987868775728999999997889989999699999----999658888--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3653489999889999999999811019999999789999999999
Q 002512 748 LDPVLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERAL 793 (914)
Q Consensus 748 ~d~~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l 793 (914)
|.+. ....+.+..+.+|+.+||+.+|++||||.||++.|+.+.
T Consensus 257 --p~~~-~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~ 299 (307)
T 3omv_A 257 --PDLS-KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299 (307)
T ss_dssp --CCST-TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred --CCCC-CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf --8720-035445699999999975779768909899999999974
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=407.45 Aligned_cols=270 Identities=26% Similarity=0.365 Sum_probs=217.2
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEEEECC------CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CCEEEEECEE
Q ss_conf 99999851312102866534999999808------9599999922036332064989999999981069-8523210201
Q 002512 509 EELERATGGFKEEVGKGSFSCVYKGVLKD------GTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNH-AHLLNLLGYC 581 (914)
Q Consensus 509 ~el~~~t~~f~~~lG~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~H-pnIv~l~g~~ 581 (914)
.|+.+..+.+.+.||+|+||.||+|.+.. .+.||||++.... .....++|.+|+.+|.+++| ||||+++|+|
T Consensus 59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~-~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~ 137 (353)
T 4ase_A 59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGA-THSEHRALMSELKILIHIGHHLNVVNLLGAC 137 (353)
T ss_dssp HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 170579959820982178959999998688854477599999976235-8689999999999999757998487788999
Q ss_pred ECC-CEEEEEEEECCCCCHHHHHHCCCCC-----------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC
Q ss_conf 118-7689999657999977863039520-----------0013555668989999999999964169998220588764
Q 002512 582 EEG-RERLLVYEFMAHGSLHQHLHGKSKA-----------LKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSS 649 (914)
Q Consensus 582 ~~~-~~~~LV~Ey~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~ 649 (914)
.+. ...+||||||++|+|.++|+..... .+..+++..++.++.|||+||+|||+++ ||||||||+
T Consensus 138 ~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~---iiHRDLK~~ 214 (353)
T 4ase_A 138 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK---CIHRDLAAR 214 (353)
T ss_dssp CCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT---CCCSCCSGG
T ss_pred EECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCCC
T ss_conf 94697799999838989799999743566654333410110356899999999999999987676278---435746721
Q ss_pred CEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCC
Q ss_conf 26874999499943587545999999997557888677669452301899982007889999999990-99886543456
Q 002512 650 NILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILS-GRKAIDMQFEE 728 (914)
Q Consensus 650 NILl~~~~~~kI~DFGla~~~~~~~~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELlt-G~~p~~~~~~~ 728 (914)
|||+++++.+||+|||+|+....+..........||+.|||||++....++.++|||||||+||||+| |+.||......
T Consensus 215 NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~ 294 (353)
T 4ase_A 215 NILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID 294 (353)
T ss_dssp GEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS
T ss_pred CEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 13057999789796543222456887203254014666569899946999975537406899999981899999998989
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4178978866522984322365348999988999999999981101999999978999999999998
Q 002512 729 GNIVEWAVPLIKSGDITAILDPVLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERALAQ 795 (914)
Q Consensus 729 ~~l~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l~~ 795 (914)
..+ ...+..+.. .+.+...+.++.+++.+||+.||++|||+.|+++.|+.++..
T Consensus 295 ~~~----~~~i~~g~~---------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 295 EEF----CRRLKEGTR---------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHH----HHHHHHTCC---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHCCCC---------CCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 999----999973898---------888865789999999997686966793999999999999987
No 6
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=397.75 Aligned_cols=250 Identities=21% Similarity=0.327 Sum_probs=206.0
Q ss_pred CCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEEEEEEEEC
Q ss_conf 131210286653499999980-8959999992203633206498999999998106985232102011187689999657
Q 002512 516 GGFKEEVGKGSFSCVYKGVLK-DGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRERLLVYEFM 594 (914)
Q Consensus 516 ~~f~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~Ey~ 594 (914)
+.+.++||+|+||.||+++++ +++.||||++..........+.|.+|+.++++|+|||||++++++++.+..||||||+
T Consensus 26 Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~ 105 (350)
T 4b9d_A 26 YVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYC 105 (350)
T ss_dssp EEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 58847970277939999998899989999998658789799999999999998779989891999999899999999488
Q ss_pred CCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 99997786303952000135556689899999999999641699982205887642687499949994358754599999
Q 002512 595 AHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADS 674 (914)
Q Consensus 595 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~~~kI~DFGla~~~~~~~ 674 (914)
++|+|.++|..... ..+++...+.|+.||+.||+|||+++ |+||||||+||||+.++.+||+|||+|+......
T Consensus 106 ~gg~L~~~i~~~~~---~~~~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 106 EGGDLFKRINAQKG---VLFQEDQILDWFVQICLALKHVHDRK---ILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp TTCBHHHHHHHTTT---CCCCHHHHHHHHHHHHHHHHHHHHTT---CEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCHHHHHHHCCC---CCCCHHHHHHHHHHHHHHHHHHHHCC---EEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 99839999997389---99978999999999999999999899---1513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99975578886776694523018999820078899999999909988654345641789788665229843223653489
Q 002512 675 SSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVEWAVPLIKSGDITAILDPVLKL 754 (914)
Q Consensus 675 ~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~i~d~~~~~ 754 (914)
.......||+.|||||++.+..|+.++|||||||+||||+||+.||..... .+... .+..+....
T Consensus 180 --~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~----~~~~~-~i~~~~~~~-------- 244 (350)
T 4b9d_A 180 --ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM----KNLVL-KIISGSFPP-------- 244 (350)
T ss_dssp --HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHH-HHHHTCCCC--------
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHH-HHHCCCCCC--------
T ss_conf --410145788360399998799989599999999999999978799899699----99999-998089999--------
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 999889999999999811019999999789999
Q 002512 755 PSDLDALKRIANVACKCVRMRGKERPSMDKVTT 787 (914)
Q Consensus 755 ~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~ 787 (914)
.+...+.++.+|+.+||..||++|||++|+++
T Consensus 245 -~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 245 -VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp -CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -97557999999999985589667908999963
No 7
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=391.90 Aligned_cols=248 Identities=27% Similarity=0.445 Sum_probs=198.6
Q ss_pred CCCCCCCCCCCEEEEEEEECC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEEC----CCEEEEEE
Q ss_conf 312102866534999999808-9599999922036332064989999999981069852321020111----87689999
Q 002512 517 GFKEEVGKGSFSCVYKGVLKD-GTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEE----GRERLLVY 591 (914)
Q Consensus 517 ~f~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~----~~~~~LV~ 591 (914)
.|.++||+|+||.||+|.++. +..||+|++..........+.|.+|+.++++++|||||++++++.+ ....||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEE
T ss_conf 95069700738599999988999099999983254798999999999999986799899919889964367886899999
Q ss_pred EECCCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECC-CCCEEEEECCCCCCC
Q ss_conf 6579999778630395200013555668989999999999964169998220588764268749-994999435875459
Q 002512 592 EFMAHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDE-EHNARVADFGLSLLG 670 (914)
Q Consensus 592 Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~-~~~~kI~DFGla~~~ 670 (914)
||+++|+|.++++... .+++.....++.||+.||+|||+++ ++|+||||||+||||+. ++.+||+|||+|+..
T Consensus 109 Ey~~gg~L~~~l~~~~-----~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~ 182 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-----VMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp ECCCSCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred ECCCCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCHHHEEEECCCCCEEEEECCCCEEC
T ss_conf 4879789999998669-----9999999999999999999999779-988716457426658889998899727688767
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999997557888677669452301899982007889999999990998865434564178978866522984322365
Q 002512 671 PADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVEWAVPLIKSGDITAILDP 750 (914)
Q Consensus 671 ~~~~~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~i~d~ 750 (914)
.. .......||+.|||||++.+ .++.++|||||||+||||+||+.||........+. ..+..+......+
T Consensus 183 ~~----~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~----~~i~~~~~~~~~~- 252 (290)
T 3fpq_A 183 RA----SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIY----RRVTSGVKPASFD- 252 (290)
T ss_dssp CT----TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHH----HHHTTTCCCGGGG-
T ss_pred CC----CCCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH----HHHHCCCCCCCCC-
T ss_conf 98----76677624802018978079-99927888879999999997889999998199999----9997389987777-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 3489999889999999999811019999999789999
Q 002512 751 VLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTT 787 (914)
Q Consensus 751 ~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~ 787 (914)
...+.++.+|+.+||..||++|||++|+++
T Consensus 253 -------~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 253 -------KVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -------GCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -------CCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -------657899999999976389657919999956
No 8
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=391.60 Aligned_cols=267 Identities=24% Similarity=0.339 Sum_probs=201.0
Q ss_pred HCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCC----EEEEE
Q ss_conf 51312102866534999999808959999992203633206498999999998106985232102011187----68999
Q 002512 515 TGGFKEEVGKGSFSCVYKGVLKDGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGR----ERLLV 590 (914)
Q Consensus 515 t~~f~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~----~~~LV 590 (914)
++.+.++||+|+||.||+|+++ ++.||||++.... .....+..|+..+.+++|||||++++++.+.+ ..+||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV 79 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 8999789840899399999999-9899999988313---36699999999986089998870999998468872378877
Q ss_pred EEECCCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CCCCEECCCCCCCCEEECCCCCEEEEECC
Q ss_conf 9657999977863039520001355566898999999999996416-----99982205887642687499949994358
Q 002512 591 YEFMAHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGY-----ACPPVIHRDIKSSNILIDEEHNARVADFG 665 (914)
Q Consensus 591 ~Ey~~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~-----~~~~iiHrDIKp~NILl~~~~~~kI~DFG 665 (914)
|||+++|+|.++|+.. .++|..+++++.|++.||+|||++ ..++|+||||||+||||+.++.+||+|||
T Consensus 80 ~Ey~~~gsL~~~l~~~------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFG 153 (303)
T 3hmm_A 80 SDYHEHGSLFDYLNRY------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 153 (303)
T ss_dssp EECCTTCBHHHHHHHC------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCT
T ss_pred ECCCCCCCHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECC
T ss_conf 5178999689999757------9998999999999999999999852400478987624678420899889978998479
Q ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHCC------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--------
Q ss_conf 75459999999--975578886776694523018------99982007889999999990998865434564--------
Q 002512 666 LSLLGPADSSS--PLAELPAGTLGYLDPEYYRLH------YLTTKSDVYSFGVLLLEILSGRKAIDMQFEEG-------- 729 (914)
Q Consensus 666 la~~~~~~~~~--~~~~~~~Gt~~Y~aPE~l~~~------~~s~ksDVySlGviL~ELltG~~p~~~~~~~~-------- 729 (914)
+|+........ .......||+.|||||++.+. .++.++|||||||+||||+||++|+.......
T Consensus 154 la~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~ 233 (303)
T 3hmm_A 154 LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233 (303)
T ss_dssp TCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSC
T ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCC
T ss_conf 87455677773221046424664626988845654556776570676664799999998789987766522353100254
Q ss_pred --CHHHHHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --178978866522984322365348-999988999999999981101999999978999999999998
Q 002512 730 --NIVEWAVPLIKSGDITAILDPVLK-LPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERALAQ 795 (914)
Q Consensus 730 --~l~~~~~~~~~~~~~~~i~d~~~~-~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l~~ 795 (914)
.........+..... +|.+. .....+.+..+.+|+.+||+.||++||||.||++.|+++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~----rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 234 SDPSVEEMRKVVCEQKL----RPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp SSCCHHHHHHHHTTSCC----CCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 54309999998750257----998876556658999999999997605975795999999999988987
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=390.41 Aligned_cols=255 Identities=25% Similarity=0.281 Sum_probs=208.0
Q ss_pred CCCCCCCCCCCCEEEEEEEECC-CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEEEEEEEEC
Q ss_conf 1312102866534999999808-959999992203633206498999999998106985232102011187689999657
Q 002512 516 GGFKEEVGKGSFSCVYKGVLKD-GTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRERLLVYEFM 594 (914)
Q Consensus 516 ~~f~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~Ey~ 594 (914)
+.+.++||+|+||.||+++++. ++.||||++.... .+.+|+.++++++|||||++++++.+.+..||||||+
T Consensus 60 ~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-------~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 60 MTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-------FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-------CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred EEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHH-------HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 176868513878099999988999899999978888-------6999999998579989993999999899999999665
Q ss_pred CCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCC-CEEEEECCCCCCCCCC
Q ss_conf 999977863039520001355566898999999999996416999822058876426874999-4999435875459999
Q 002512 595 AHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEH-NARVADFGLSLLGPAD 673 (914)
Q Consensus 595 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~-~~kI~DFGla~~~~~~ 673 (914)
++|+|.++|+... .+++.....++.||+.||+|||+++ |+||||||+||||+.++ .+||+|||+|+....+
T Consensus 133 ~gg~L~~~l~~~~-----~l~e~~~~~~~~qi~~aL~ylH~~~---IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 133 EGGSLGQLIKQMG-----CLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp TTCBHHHHHHHHS-----SCCHHHHHHHHHHHHHHHHHHHTTT---EECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHCC---CEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 9986999998769-----9999999999999999999999889---0426167788799589997999627877685678
Q ss_pred CCC---CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999---97557888677669452301899982007889999999990998865434564178978866522984322365
Q 002512 674 SSS---PLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVEWAVPLIKSGDITAILDP 750 (914)
Q Consensus 674 ~~~---~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~i~d~ 750 (914)
... .......||+.|||||++.+..++.++|||||||+||||+||+.||........+.. +..... +
T Consensus 205 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~-----i~~~~~-----~ 274 (336)
T 4g3f_A 205 GLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLK-----IASEPP-----P 274 (336)
T ss_dssp ---------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHH-----HHHSCC-----G
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH-----HHCCCC-----C
T ss_conf 765402217854558020089998899989089999999999999978699899899999999-----980899-----8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 34899998899999999998110199999997899999999999870
Q 002512 751 VLKLPSDLDALKRIANVACKCVRMRGKERPSMDKVTTALERALAQLM 797 (914)
Q Consensus 751 ~~~~~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~~L~~~l~~~~ 797 (914)
.... +...+..+.+++.+||..||.+|||+.|+++.|...+....
T Consensus 275 ~~~~--~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 275 IREI--PPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp GGGS--CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred CHHC--CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0025--86679999999999762897689599999999999975443
No 10
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=389.72 Aligned_cols=247 Identities=20% Similarity=0.316 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCCEEEEEEEEC-CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECEEECCCEEEEEEEEC
Q ss_conf 131210286653499999980-8959999992203633206498999999998106985232102011187689999657
Q 002512 516 GGFKEEVGKGSFSCVYKGVLK-DGTVVAVKKAIATSDRQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGRERLLVYEFM 594 (914)
Q Consensus 516 ~~f~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~f~~E~~~l~~l~HpnIv~l~g~~~~~~~~~LV~Ey~ 594 (914)
+.+.++||+|+||.||+++++ +++.||||++.... ....+.+.+|+.+|++++|||||++++++.+.+..||||||+
T Consensus 153 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~--~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 153 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK--QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT--CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 386169624818489999999999899999986255--468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 99997786303952000135556689899999999999641699982205887642687499949994358754599999
Q 002512 595 AHGSLHQHLHGKSKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADS 674 (914)
Q Consensus 595 ~~gsL~~~l~~~~~~~~~~l~~~~~~~i~~qia~gL~yLH~~~~~~iiHrDIKp~NILl~~~~~~kI~DFGla~~~~~~~ 674 (914)
++|+|.+++... .+++.....++.||+.||+|||+++ |+||||||+||||+.++.+||+|||+|+......
T Consensus 231 ~gG~L~~~i~~~------~l~e~~~~~~~~qil~aL~ylH~~~---IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~ 301 (423)
T 4fie_A 231 EGGALTDIVTHT------RMNEEQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV 301 (423)
T ss_dssp TTEEHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHTT---EECCCCSTTTEEECTTCCEEECCCTTCEECCSSC
T ss_pred CCCCHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHCC---EECCCCCHHHEEECCCCCEEEECCCCCEECCCCC
T ss_conf 998289887616------9899999999999999999999889---0446578777898589998980372654777887
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99975578886776694523018999820078899999999909988654345641789788665229843223653489
Q 002512 675 SSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVEWAVPLIKSGDITAILDPVLKL 754 (914)
Q Consensus 675 ~~~~~~~~~Gt~~Y~aPE~l~~~~~s~ksDVySlGviL~ELltG~~p~~~~~~~~~l~~~~~~~~~~~~~~~i~d~~~~~ 754 (914)
.......||+.|||||++....|+.++|||||||+||||++|+.||...... +. ...+.... .+.+.
T Consensus 302 --~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~----~~-~~~i~~~~-----~~~~~- 368 (423)
T 4fie_A 302 --PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL----KA-MKMIRDNL-----PPRLK- 368 (423)
T ss_dssp --CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH----HH-HHHHHHSC-----CCCCS-
T ss_pred --CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH----HH-HHHHHCCC-----CCCCC-
T ss_conf --6434666474727999977999996899999999999999787998986999----99-99997279-----98876-
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 999889999999999811019999999789999
Q 002512 755 PSDLDALKRIANVACKCVRMRGKERPSMDKVTT 787 (914)
Q Consensus 755 ~~~~~~~~~l~~l~~~Cl~~dp~~RPs~~ev~~ 787 (914)
.......++.+|+.+||..||++|||+.|+++
T Consensus 369 -~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 369 -NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -CTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf -50129999999999986789568909999960
Done!