Query 002513
Match_columns 914
No_of_seqs 244 out of 344
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 01:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 4E-179 8E-184 1530.0 27.7 644 192-913 228-884 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 7E-22 1.5E-26 185.0 3.5 72 191-262 5-87 (105)
3 PF08879 WRC: WRC; InterPro: 99.6 1.7E-15 3.8E-20 122.6 2.9 41 17-57 1-41 (46)
4 PF02373 JmjC: JmjC domain, hy 99.5 2.7E-14 5.8E-19 131.3 4.4 83 762-860 30-114 (114)
5 PF13621 Cupin_8: Cupin-like d 98.9 2.1E-10 4.6E-15 117.7 1.4 40 825-864 207-249 (251)
6 smart00558 JmjC A domain famil 96.8 0.00053 1.2E-08 57.2 1.2 54 596-667 3-56 (57)
7 KOG2131 Uncharacterized conser 95.8 0.0095 2.1E-07 67.1 4.8 61 821-881 262-323 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 94.9 0.014 3E-07 47.3 1.8 30 320-349 1-31 (43)
9 cd02335 ZZ_ADA2 Zinc finger, Z 93.5 0.042 9.1E-07 45.5 1.7 29 321-349 2-32 (49)
10 cd02249 ZZ Zinc finger, ZZ typ 93.4 0.045 9.7E-07 44.6 1.7 32 321-352 2-34 (46)
11 cd02339 ZZ_Mind_bomb Zinc fing 93.3 0.048 1E-06 44.8 1.8 30 320-349 1-32 (45)
12 PF07883 Cupin_2: Cupin domain 92.1 0.064 1.4E-06 45.3 1.1 26 828-853 38-63 (71)
13 COG1917 Uncharacterized conser 91.8 0.085 1.8E-06 50.7 1.7 57 797-858 57-115 (131)
14 KOG2130 Phosphatidylserine-spe 90.5 0.16 3.5E-06 56.8 2.4 43 825-867 261-303 (407)
15 cd02344 ZZ_HERC2 Zinc finger, 89.7 0.2 4.3E-06 41.3 1.7 31 320-350 1-33 (45)
16 PF00569 ZZ: Zinc finger, ZZ t 89.5 0.19 4.1E-06 41.1 1.5 35 318-352 3-39 (46)
17 COG0662 {ManC} Mannose-6-phosp 89.2 0.25 5.4E-06 48.0 2.3 41 826-866 74-114 (127)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 89.0 0.22 4.8E-06 41.5 1.6 31 321-351 2-36 (48)
19 smart00291 ZnF_ZZ Zinc-binding 88.9 0.22 4.8E-06 40.3 1.5 36 319-354 4-40 (44)
20 cd02345 ZZ_dah Zinc finger, ZZ 87.1 0.35 7.7E-06 40.2 1.6 32 320-351 1-34 (49)
21 cd02338 ZZ_PCMF_like Zinc fing 86.2 0.38 8.3E-06 40.0 1.4 31 320-350 1-33 (49)
22 cd02337 ZZ_CBP Zinc finger, ZZ 85.7 0.43 9.4E-06 38.5 1.4 29 321-350 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.3 0.44 9.6E-06 51.8 1.7 30 822-851 213-242 (260)
24 KOG1356 Putative transcription 81.6 0.69 1.5E-05 57.3 1.5 69 281-351 191-261 (889)
25 PRK09943 DNA-binding transcrip 81.1 1.1 2.3E-05 45.9 2.5 60 799-864 124-183 (185)
26 PRK13290 ectC L-ectoine syntha 78.7 1.4 2.9E-05 43.4 2.2 37 826-864 74-110 (125)
27 cd02334 ZZ_dystrophin Zinc fin 77.6 1.4 3.1E-05 36.9 1.7 33 320-352 1-35 (49)
28 cd00162 RING RING-finger (Real 77.4 1.9 4.1E-05 32.7 2.2 42 196-244 2-43 (45)
29 PF07649 C1_3: C1-like domain; 76.6 1.2 2.7E-05 33.1 1.0 27 321-347 2-29 (30)
30 PHA02926 zinc finger-like prot 76.1 1.1 2.4E-05 48.3 0.9 33 212-245 196-228 (242)
31 TIGR00218 manA mannose-6-phosp 75.7 1.4 3.1E-05 48.7 1.6 41 832-873 156-205 (302)
32 cd02343 ZZ_EF Zinc finger, ZZ 75.2 1.9 4E-05 36.3 1.8 31 320-350 1-32 (48)
33 PF01050 MannoseP_isomer: Mann 74.0 1.9 4.2E-05 43.7 1.9 22 832-853 107-128 (151)
34 COG4101 Predicted mannose-6-ph 73.9 1.4 3E-05 43.6 0.8 25 828-852 89-113 (142)
35 PRK15131 mannose-6-phosphate i 73.3 1.8 3.9E-05 50.1 1.7 18 829-846 239-256 (389)
36 PHA02929 N1R/p28-like protein; 69.6 3.1 6.6E-05 45.4 2.3 46 193-245 174-225 (238)
37 PF13639 zf-RING_2: Ring finge 69.5 1.5 3.3E-05 34.9 0.0 29 207-243 16-44 (44)
38 PRK04190 glucose-6-phosphate i 69.1 3.5 7.5E-05 43.5 2.6 42 825-867 118-159 (191)
39 KOG0320 Predicted E3 ubiquitin 68.0 4.8 0.00011 42.2 3.2 46 192-244 130-175 (187)
40 KOG0823 Predicted E3 ubiquitin 67.1 4.5 9.7E-05 43.9 2.9 47 192-244 46-92 (230)
41 COG1482 ManA Phosphomannose is 66.9 3 6.4E-05 47.1 1.6 19 829-847 160-178 (312)
42 KOG0317 Predicted E3 ubiquitin 64.9 4.5 9.8E-05 45.1 2.5 47 191-246 237-283 (293)
43 PLN03208 E3 ubiquitin-protein 64.9 8.4 0.00018 40.9 4.3 52 192-246 17-78 (193)
44 PLN02288 mannose-6-phosphate i 63.9 3.6 7.7E-05 47.8 1.6 16 831-846 255-270 (394)
45 smart00184 RING Ring finger. E 63.0 4.7 0.0001 29.3 1.5 26 211-242 14-39 (39)
46 KOG2508 Predicted phospholipas 60.7 9 0.00019 44.1 3.9 37 489-525 34-73 (437)
47 TIGR01479 GMP_PMI mannose-1-ph 60.1 4.4 9.6E-05 47.7 1.5 41 824-864 412-452 (468)
48 PF00190 Cupin_1: Cupin; Inte 59.5 7.5 0.00016 38.2 2.7 38 828-865 81-125 (144)
49 PF13920 zf-C3HC4_3: Zinc fing 59.3 4.5 9.7E-05 33.1 1.0 43 194-244 3-45 (50)
50 smart00154 ZnF_AN1 AN1-like Zi 57.5 6.9 0.00015 31.3 1.7 31 196-230 1-31 (39)
51 TIGR00599 rad18 DNA repair pro 57.0 7.6 0.00017 45.3 2.7 47 192-247 25-71 (397)
52 smart00249 PHD PHD zinc finger 56.7 8.8 0.00019 29.5 2.2 46 195-242 1-47 (47)
53 KOG4582 Uncharacterized conser 56.0 5.9 0.00013 44.0 1.5 31 320-350 153-185 (278)
54 PF13923 zf-C3HC4_2: Zinc fing 55.5 7.7 0.00017 30.2 1.7 29 207-242 11-39 (39)
55 PF15227 zf-C3HC4_4: zinc fing 54.8 5.9 0.00013 31.9 0.9 28 212-242 15-42 (42)
56 PF13248 zf-ribbon_3: zinc-rib 54.6 6.1 0.00013 28.8 0.9 25 319-343 2-26 (26)
57 PTZ00194 60S ribosomal protein 52.8 6.1 0.00013 40.1 0.9 43 800-844 18-60 (143)
58 cd02342 ZZ_UBA_plant Zinc fing 52.4 9.7 0.00021 31.5 1.8 31 320-350 1-33 (43)
59 PRK15460 cpsB mannose-1-phosph 52.1 7.6 0.00016 46.2 1.6 30 823-852 420-449 (478)
60 PF13240 zinc_ribbon_2: zinc-r 51.1 7.5 0.00016 27.9 0.9 23 321-343 1-23 (23)
61 PF14634 zf-RING_5: zinc-RING 50.4 14 0.0003 29.7 2.4 42 196-244 2-44 (44)
62 KOG0978 E3 ubiquitin ligase in 49.4 5.2 0.00011 49.4 -0.2 45 191-243 641-685 (698)
63 smart00835 Cupin_1 Cupin. This 48.7 14 0.0003 36.5 2.6 53 799-851 46-99 (146)
64 PF02041 Auxin_BP: Auxin bindi 48.4 9.5 0.00021 39.2 1.4 41 806-851 75-115 (167)
65 PF08007 Cupin_4: Cupin superf 47.6 17 0.00036 40.8 3.4 41 827-867 176-216 (319)
66 PF00097 zf-C3HC4: Zinc finger 47.1 7.7 0.00017 30.1 0.5 29 209-242 13-41 (41)
67 TIGR03404 bicupin_oxalic bicup 46.5 13 0.00029 42.8 2.4 85 796-882 258-343 (367)
68 TIGR03214 ura-cupin putative a 45.1 15 0.00033 40.2 2.5 47 801-852 77-123 (260)
69 PF00628 PHD: PHD-finger; Int 45.1 3.2 6.9E-05 33.8 -2.0 48 195-243 1-49 (51)
70 KOG0457 Histone acetyltransfer 42.3 9.9 0.00021 44.6 0.6 32 318-349 13-46 (438)
71 PF02938 GAD: GAD domain; Int 41.8 9.2 0.0002 35.6 0.2 69 769-849 23-93 (95)
72 COG5432 RAD18 RING-finger-cont 41.3 14 0.0003 41.5 1.5 42 193-244 25-67 (391)
73 PF01238 PMI_typeI: Phosphoman 40.9 9.8 0.00021 43.8 0.3 16 831-846 254-269 (373)
74 KOG3899 Uncharacterized conser 40.1 11 0.00023 42.4 0.4 45 207-256 317-370 (381)
75 PRK01191 rpl24p 50S ribosomal 39.6 13 0.00028 36.9 0.8 42 800-843 17-58 (120)
76 COG5114 Histone acetyltransfer 37.5 9.2 0.0002 43.3 -0.6 30 320-349 6-37 (432)
77 PRK04023 DNA polymerase II lar 37.0 19 0.00042 46.2 1.9 33 188-222 621-657 (1121)
78 PF10571 UPF0547: Uncharacteri 36.7 21 0.00045 26.5 1.3 23 321-343 2-24 (26)
79 KOG3905 Dynein light intermedi 35.3 17 0.00036 41.8 1.0 63 767-844 242-313 (473)
80 PF12678 zf-rbx1: RING-H2 zinc 34.7 27 0.00059 31.2 2.1 26 211-243 48-73 (73)
81 PRK13264 3-hydroxyanthranilate 34.3 27 0.00058 36.8 2.2 64 805-870 55-119 (177)
82 TIGR03037 anthran_nbaC 3-hydro 33.1 28 0.00061 36.1 2.1 46 825-870 68-113 (159)
83 PF06844 DUF1244: Protein of u 32.7 18 0.00038 32.6 0.5 15 217-231 11-25 (68)
84 KOG2583 Ubiquinol cytochrome c 31.8 26 0.00057 41.0 1.8 46 458-504 158-206 (429)
85 PRK10371 DNA-binding transcrip 31.4 35 0.00076 37.7 2.7 34 821-854 58-91 (302)
86 TIGR00570 cdk7 CDK-activating 30.7 46 0.001 37.9 3.4 43 194-244 4-51 (309)
87 PF10272 Tmpp129: Putative tra 29.7 47 0.001 38.5 3.4 54 191-245 269-349 (358)
88 TIGR03404 bicupin_oxalic bicup 29.4 42 0.0009 38.8 2.9 53 825-881 108-165 (367)
89 smart00504 Ubox Modified RING 29.1 51 0.0011 27.5 2.7 42 195-245 3-44 (63)
90 KOG2164 Predicted E3 ubiquitin 28.8 38 0.00083 40.7 2.5 83 158-257 154-237 (513)
91 cd00065 FYVE FYVE domain; Zinc 28.4 34 0.00073 28.4 1.5 34 194-228 3-38 (57)
92 PF05899 Cupin_3: Protein of u 28.3 31 0.00066 30.7 1.3 16 829-844 46-61 (74)
93 KOG1280 Uncharacterized conser 28.3 25 0.00055 40.4 0.9 34 316-349 5-40 (381)
94 TIGR01080 rplX_A_E ribosomal p 28.1 34 0.00073 33.7 1.6 44 800-845 13-56 (114)
95 PRK11171 hypothetical protein; 27.9 43 0.00094 36.8 2.6 28 824-851 98-125 (266)
96 PTZ00303 phosphatidylinositol 27.6 33 0.00071 43.1 1.7 33 193-226 460-499 (1374)
97 PF15446 zf-PHD-like: PHD/FYVE 27.2 65 0.0014 33.9 3.5 50 195-245 1-60 (175)
98 PRK11171 hypothetical protein; 26.8 36 0.00079 37.4 1.8 31 821-851 217-247 (266)
99 KOG2107 Uncharacterized conser 26.2 51 0.0011 34.6 2.5 56 775-847 80-136 (179)
100 COG3492 Uncharacterized protei 26.1 14 0.00031 35.0 -1.2 15 217-231 42-56 (104)
101 PF12852 Cupin_6: Cupin 25.8 40 0.00087 34.2 1.8 44 799-852 37-80 (186)
102 PF14446 Prok-RING_1: Prokaryo 25.3 30 0.00064 30.0 0.6 24 315-341 17-44 (54)
103 cd02336 ZZ_RSC8 Zinc finger, Z 25.3 38 0.00081 28.2 1.2 30 321-350 2-32 (45)
104 KOG1814 Predicted E3 ubiquitin 25.0 41 0.00088 39.6 1.8 25 204-229 290-314 (445)
105 PF03833 PolC_DP2: DNA polymer 24.9 24 0.00053 44.6 0.0 36 187-224 649-688 (900)
106 PF03107 C1_2: C1 domain; Int 23.9 37 0.0008 25.5 0.8 26 322-347 3-29 (30)
107 KOG2177 Predicted E3 ubiquitin 23.9 39 0.00085 34.7 1.3 44 191-243 11-54 (386)
108 PF08990 Docking: Erythronolid 23.7 45 0.00098 25.2 1.2 17 773-789 3-19 (27)
109 PF09567 RE_MamI: MamI restric 23.7 34 0.00075 37.9 0.9 22 320-341 83-104 (314)
110 PF12861 zf-Apc11: Anaphase-pr 23.7 59 0.0013 30.6 2.2 46 194-244 33-79 (85)
111 smart00647 IBR In Between Ring 23.6 40 0.00087 28.1 1.1 26 204-230 37-62 (64)
112 COG5219 Uncharacterized conser 23.5 34 0.00074 43.8 0.9 33 207-244 1488-1520(1525)
113 KOG1039 Predicted E3 ubiquitin 23.1 34 0.00074 39.4 0.7 31 212-244 186-218 (344)
114 PRK14892 putative transcriptio 23.0 52 0.0011 31.7 1.8 30 313-342 15-51 (99)
115 COG5574 PEX10 RING-finger-cont 22.6 44 0.00094 37.3 1.4 47 192-246 214-261 (271)
116 PF14369 zf-RING_3: zinc-finge 22.5 39 0.00084 26.6 0.7 20 195-214 4-28 (35)
117 PF10122 Mu-like_Com: Mu-like 21.9 42 0.00092 28.8 0.9 30 207-245 4-33 (51)
118 PF02318 FYVE_2: FYVE-type zin 21.9 16 0.00035 35.4 -1.9 47 191-243 52-101 (118)
119 PF02311 AraC_binding: AraC-li 21.8 60 0.0013 29.7 1.9 45 822-867 36-82 (136)
120 PF03079 ARD: ARD/ARD' family; 21.6 27 0.00059 35.9 -0.4 84 767-863 66-152 (157)
121 PRK15457 ethanolamine utilizat 21.2 53 0.0011 36.0 1.6 73 764-850 144-216 (233)
122 TIGR02297 HpaA 4-hydroxyphenyl 21.0 70 0.0015 34.3 2.5 31 822-852 57-87 (287)
123 PF06249 EutQ: Ethanolamine ut 20.8 71 0.0015 33.0 2.4 21 824-844 110-130 (152)
124 PRK13503 transcriptional activ 20.5 50 0.0011 35.1 1.3 31 822-852 48-78 (278)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=3.5e-179 Score=1529.98 Aligned_cols=644 Identities=31% Similarity=0.512 Sum_probs=570.3
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCccccccccccCCcccccccc----ccc
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIRE----IPV 267 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgiCNCs~Clr~~g~~~t~~~e----is~ 267 (914)
...+||||.+..+..+-+|++|+-+ ||.+|++.||+....++++.+|++|+..|||..|....++++|.+.. ++.
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~~ 306 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLDL 306 (889)
T ss_pred cchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhhH
Confidence 4569999998888889999999944 99999999999998899999999999999999999999999998766 788
Q ss_pred ccchHHHH--HHHHhhhhhhhhhhhhhhhhhheehhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcch
Q 002513 268 LDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDL 343 (914)
Q Consensus 268 ~~Kv~~l~--yll~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~i~--i~~a~~~~DERvyCDnCkTSIvD~HRSC~~CsYDL 343 (914)
.+++.++. |+|..++|+|+.++..|..+.|.||+|||.... ...+...++|++|||+|+|||.|+||+||+|+|.+
T Consensus 307 ~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~~ 386 (889)
T KOG1356|consen 307 SDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYAI 386 (889)
T ss_pred HHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCccccc
Confidence 88888887 999999999999999999999999999999822 45677777999999999999999999999999999
Q ss_pred hHhhhHHHhhcccCCCcc-ccccccccc---cccchhhhhhhhhhhhccccCCCCcccCCCCCccCCCCCCCCCCCcccc
Q 002513 344 CLSCCQDLREASTSVGKE-EFSENDRIQ---DTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLN 419 (914)
Q Consensus 344 CL~CC~ELR~g~~~~~~~-~~~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~W~a~~dGsIpCpPke~ggCg~~~L~ 419 (914)
||.||++||+|.+....+ .+.+..||. ||-...+....+.. ...+ +. +|++|+|.|-|..++||+...|.
T Consensus 387 ~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~---~~~~-~~--~~~ng~~r~l~~~~~g~~~~~l~ 460 (889)
T KOG1356|consen 387 CLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVS---VDEP-SS--ANENGSLRDLLLSLAGCLDRGLK 460 (889)
T ss_pred cchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCC---CCCC-cc--cccccchhhcccccCccchhhhh
Confidence 999999999998877766 566888877 66555443322221 0011 11 89999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhcCCcCCCCCc-cccCCCCcccccccccCCCCCCeeecCCCcccccccHHHHHHHhhcC
Q 002513 420 LSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKG 498 (914)
Q Consensus 420 L~~if~~~wi~~L~~~aee~~~~~~~~d~~~~-~c~~~~~~~~r~aA~re~s~dn~ly~P~~~d~~~~~l~hFQ~hW~kG 498 (914)
|+|+||..|.+.|+.+||.-+..+-..-.... .|+....+.++++|.|+.+.|||||||.+.+++.+|+.|||+||++|
T Consensus 461 lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhWkqG 540 (889)
T KOG1356|consen 461 LKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHWKQG 540 (889)
T ss_pred hhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHHhcC
Confidence 99999999999999999999987444433322 23455677889999999999999999999889999999999999999
Q ss_pred CCEEEecccccCCCCCCchhhhhhHHhhhhccccccccCceEEEecCCCceEecchhhhhcccCCCcccCCCCcceeeec
Q 002513 499 EPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLK 578 (914)
Q Consensus 499 ePVIV~~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gf~~gr~~~~g~p~mLKLK 578 (914)
||||||||++++++++|+||+|||+|++..+.-+.-.+.++.++||++ +..+||.||++|+++++|||+|||||
T Consensus 541 qPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vLKLK 614 (889)
T KOG1356|consen 541 QPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVLKLK 614 (889)
T ss_pred CcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEEeec
Confidence 999999999999999999999999999876654445566677778877 78999999999999999999999999
Q ss_pred CCCCcchhHHHhhhchhHHHhCCCcccccCCCCccchhcccCCCCCCCCCCCcchhhcccccccccCCCCcceeeeeccc
Q 002513 579 DWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPD 658 (914)
Q Consensus 579 DWPps~~F~e~lP~h~~eFi~aLP~~EYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelG~GdSvTkLH~DmSD 658 (914)
||||+++|+++||+||+|||++|||||||| ++|.||||++||.+|++||||||||||||+++++|||||||||||||||
T Consensus 615 DWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~dvSD 693 (889)
T KOG1356|consen 615 DWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLDVSD 693 (889)
T ss_pred CCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeeceehhh
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccCCCchhhHhhcccchhcccccCCCCCccCCCCCCCCCcCCCCCCCccccccccccchhhhhccCCccc
Q 002513 659 MVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETG 738 (914)
Q Consensus 659 AVNIL~h~aev~~~~~~~~~i~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 738 (914)
||||||||++++. +...|++++++..+++..+ ++.+..
T Consensus 694 aVNILvyv~e~~~---~~~~~~~~~k~~~~~~~de------------------------------------~~~~~~--- 731 (889)
T KOG1356|consen 694 AVNILVYVGEPPG---QIEQIAKVLKKIQEGDLDE------------------------------------ITRSRI--- 731 (889)
T ss_pred hhhheeeeccCCc---hHHhHHHHHHhhhhcchhh------------------------------------hhhhhc---
Confidence 9999999999887 4444555555444332111 111000
Q ss_pred cccccccccccccCCCCCCCCCCCceeeeeccCCChHHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHHHHHHH
Q 002513 739 TAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKL 818 (914)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~hk~rL 818 (914)
.+..+.+||||||||+|||+||||||+||++||+| +|.+|+||||||+||||.+||+||
T Consensus 732 -----------------~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~----~~~~v~hPIhDQS~YLd~~lr~RL 790 (889)
T KOG1356|consen 732 -----------------SSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGH----EVPKVHHPIHDQSWYLDRYLRRRL 790 (889)
T ss_pred -----------------cccccCCcchhhhhhhcchHHHHHHHHHhhHHhcC----CCCcccCCCcccceeccHHHHHHH
Confidence 02447899999999999999999999999999999 568899999999999999999999
Q ss_pred HHHhCccceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHHHHHHHHhcCCccccccccccchhchhhh
Q 002513 819 KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLF 898 (914)
Q Consensus 819 keEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~akeDkLeVkkm~ly 898 (914)
|||||||||||+|+||||||||||||||||||+||||||+||||||||.||||||+|||+||++|.|||||||||||+ |
T Consensus 791 keEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi-~ 869 (889)
T KOG1356|consen 791 KEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMI-Y 869 (889)
T ss_pred HHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred hhhhhhhhhhhhhcc
Q 002513 899 QEVFSPLLSLKLLCS 913 (914)
Q Consensus 899 a~~~~~~~~lk~~~~ 913 (914)
++||+||..||.+.|
T Consensus 870 hAVk~Av~~L~~~~s 884 (889)
T KOG1356|consen 870 HAVKDAVGTLKEAES 884 (889)
T ss_pred HHHHHHHHHHHHhhc
Confidence 667889999999876
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.84 E-value=7e-22 Score=185.00 Aligned_cols=72 Identities=32% Similarity=0.787 Sum_probs=65.9
Q ss_pred CCCCCccccccCCCCCeEec------CcCC--CCccCHhHHhhhcCCCchhh---hhccCCCCCCccccccccccCCccc
Q 002513 191 TGGQICHQCRRNDRERVVWC------VKCD--KRGYCDSCISTWYSDIPLEE---LEKVCPACRGSCNCKACLRADNMIK 259 (914)
Q Consensus 191 ~~g~~CHQCrqkt~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~ed---v~~~CP~CRgiCNCs~Clr~~g~~~ 259 (914)
..|.+||||||||.+.++.| .+|. ++.||+.||.+||+|+++|. ..|.||+|||||||++|++++|+.|
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~P 84 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAP 84 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCC
Confidence 78999999999999999999 6782 38999999999999987663 4699999999999999999999999
Q ss_pred ccc
Q 002513 260 VRI 262 (914)
Q Consensus 260 t~~ 262 (914)
||+
T Consensus 85 Tg~ 87 (105)
T PF10497_consen 85 TGI 87 (105)
T ss_pred cHH
Confidence 997
No 3
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=99.55 E-value=1.7e-15 Score=122.61 Aligned_cols=41 Identities=37% Similarity=0.925 Sum_probs=38.7
Q ss_pred CCCCCCcccCCCCcceecCcCCCCchhHHHHHHhhhccchh
Q 002513 17 IPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAAN 57 (914)
Q Consensus 17 ~p~~~rc~r~dgk~wrc~~~~~~~~~~ce~h~~~~~~~~~~ 57 (914)
+||++||+|+|||+|||+++|+++++|||+|++|+|+|+..
T Consensus 1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~ 41 (46)
T PF08879_consen 1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRK 41 (46)
T ss_pred CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCC
Confidence 58999999999999999999999999999999999998754
No 4
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.47 E-value=2.7e-14 Score=131.30 Aligned_cols=83 Identities=27% Similarity=0.483 Sum_probs=63.4
Q ss_pred CceeeeeccCCChHHHHHHHHHHHhhcCCCCCCCCCccCCC--CcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEe
Q 002513 762 PGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP--LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFI 839 (914)
Q Consensus 762 ~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dP--IHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFI 839 (914)
+..+|-+++++|.+++++|++++.. ..+| ++.+...+.++. ..+.||+.|+|+|++||+|||
T Consensus 30 ~~k~W~~v~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i 93 (114)
T PF02373_consen 30 GSKVWYIVPPEDADKFEKFLRSKES------------QNCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFI 93 (114)
T ss_dssp SEEEEEEE-GGGHHHHHHHHHHHHH------------HHSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE
T ss_pred cceEeEEechhhhhhHHHHHhhccc------------ccccccccccccccceee----eeccCcccccceECCCCEEEE
Confidence 3469999999999999999998722 1233 444555555554 677999999999999999999
Q ss_pred cCCCccccccccccceecccc
Q 002513 840 PAGCPFQVRNLQSTVQLGLDF 860 (914)
Q Consensus 840 PAGCPHQVRNLkSCIKVAlDF 860 (914)
|+|++|||.|+-.||++|.+|
T Consensus 94 ~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 94 PPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp -TT-EEEEEESSSEEEEEEEE
T ss_pred CCCceEEEEeCCceEEEEecC
Confidence 999999999999999999998
No 5
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.94 E-value=2.1e-10 Score=117.73 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=33.2
Q ss_pred cceeEeeecCCeEEecCCCccccccc--cc-cceecccccCcc
Q 002513 825 EPWSFEQHLGEAVFIPAGCPFQVRNL--QS-TVQLGLDFLFPE 864 (914)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 864 (914)
.+|++++.+||++|||+|-.|||+|| .. +|-|...|.+|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.77 E-value=0.00053 Score=57.22 Aligned_cols=54 Identities=33% Similarity=0.432 Sum_probs=43.3
Q ss_pred HHHhCCCcccccCCCCccchhcccCCCCCCCCCCCcchhhcccccccccCCCCcceeeeeccchhhhhhhcc
Q 002513 596 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667 (914)
Q Consensus 596 eFi~aLP~~EYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelG~GdSvTkLH~DmSDAVNIL~h~a 667 (914)
..+..||+ .+||+.+++.....|+. +|+.+|.. +|+|.+|+|+.|.||++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~~------~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGMA------GSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeCC------CCccceeEcCCCeEEEEEecC
Confidence 35667776 68999999988888877 66666653 789999999999999887643
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.85 E-value=0.0095 Score=67.10 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=49.4
Q ss_pred HhCccceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHHH-HHHHHhcCCc
Q 002513 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVR-LAEEIRCLPN 881 (914)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~r-LteEfR~Lp~ 881 (914)
++.+.+.++.|.+||+||+|.|==|||-||-..|.|--.++--=|+..=.+ |-+++-.+.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~e 323 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAE 323 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhh
Confidence 345677899999999999999999999999999999999998888876655 3344444443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=94.94 E-value=0.014 Score=47.28 Aligned_cols=30 Identities=40% Similarity=0.893 Sum_probs=28.0
Q ss_pred cccCCCccccccccccCCCC-CcchhHhhhH
Q 002513 320 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQ 349 (914)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~C-sYDLCL~CC~ 349 (914)
|.||.|+++|..+.=.|..| .||||..|-.
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 57999999999999999999 7999999976
No 9
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.45 E-value=0.042 Score=45.47 Aligned_cols=29 Identities=34% Similarity=0.960 Sum_probs=27.4
Q ss_pred ccCCCcccccc-ccccCCCC-CcchhHhhhH
Q 002513 321 CCNICRIPIID-YHRHCGNC-MYDLCLSCCQ 349 (914)
Q Consensus 321 yCDnCkTSIvD-~HRSC~~C-sYDLCL~CC~ 349 (914)
.||+|...|.. ++=.|..| .||||+.|-.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 59999999999 88899999 9999999988
No 10
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=93.37 E-value=0.045 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.879 Sum_probs=29.0
Q ss_pred ccCCCccccccccccCCCCC-cchhHhhhHHHh
Q 002513 321 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 352 (914)
Q Consensus 321 yCDnCkTSIvD~HRSC~~Cs-YDLCL~CC~ELR 352 (914)
.||.|..+|...+=.|..|. ||||..|-.+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999987543
No 11
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=93.30 E-value=0.048 Score=44.76 Aligned_cols=30 Identities=40% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccCCCc-cccccccccCCCC-CcchhHhhhH
Q 002513 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQ 349 (914)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sYDLCL~CC~ 349 (914)
+.||.|+ .+|+-+.=.|..| .||||..|-.
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999987
No 12
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.15 E-value=0.064 Score=45.32 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.3
Q ss_pred eEeeecCCeEEecCCCcccccccccc
Q 002513 828 SFEQHLGEAVFIPAGCPFQVRNLQST 853 (914)
Q Consensus 828 tf~Q~lGEAVFIPAGCPHQVRNLkSC 853 (914)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998754
No 13
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=91.83 E-value=0.085 Score=50.73 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=44.7
Q ss_pred CccCCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCcccccccccc--ceecc
Q 002513 797 DFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQST--VQLGL 858 (914)
Q Consensus 797 ~~v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 858 (914)
....||-++|.+|..+-.- +|.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 57 ~~H~hp~~~~~~~Vl~G~~-----~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 57 PWHTHPLGEQTIYVLEGEG-----TVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccccCCCcceEEEEEecEE-----EEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 3457998999999876543 255556666678999999999999999999999 55544
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=90.52 E-value=0.16 Score=56.76 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=40.4
Q ss_pred cceeEeeecCCeEEecCCCccccccccccceecccccCccCHH
Q 002513 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (914)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (914)
+|-...|.+||.||||.|==|=|-||--.|-|...|+|=||.+
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 4667899999999999999999999999999999999999975
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=89.70 E-value=0.2 Score=41.34 Aligned_cols=31 Identities=32% Similarity=0.924 Sum_probs=27.6
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhHhhhHH
Q 002513 320 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 350 (914)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~Cs-YDLCL~CC~E 350 (914)
|-||.|.+ +|+-..=.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 56999985 8999999999998 9999999875
No 16
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=89.48 E-value=0.19 Score=41.09 Aligned_cols=35 Identities=40% Similarity=0.843 Sum_probs=26.6
Q ss_pred cccccCCCcc-ccccccccCCCCC-cchhHhhhHHHh
Q 002513 318 EQMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLR 352 (914)
Q Consensus 318 ERvyCDnCkT-SIvD~HRSC~~Cs-YDLCL~CC~ELR 352 (914)
..+.||.|++ +|.-..=.|..|. ||||..|-.+-+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcC
Confidence 3578999999 9999999999998 999999987633
No 17
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.21 E-value=0.25 Score=47.95 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=30.7
Q ss_pred ceeEeeecCCeEEecCCCccccccccccceecccccCccCH
Q 002513 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 866 (914)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 866 (914)
.=.|+=+.||+|+||||.||.++|.-+.-=+.++=-+|+..
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~ 114 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYL 114 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcC
Confidence 55677789999999999999999999844344444455443
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=89.05 E-value=0.22 Score=41.51 Aligned_cols=31 Identities=39% Similarity=0.937 Sum_probs=28.0
Q ss_pred ccCCCcc-ccccccccCCCCC---cchhHhhhHHH
Q 002513 321 CCNICRI-PIIDYHRHCGNCM---YDLCLSCCQDL 351 (914)
Q Consensus 321 yCDnCkT-SIvD~HRSC~~Cs---YDLCL~CC~EL 351 (914)
-||+|.. +|+-+.=.|..|. ||||..|-..-
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 3999998 9999999999999 99999998743
No 19
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=88.94 E-value=0.22 Score=40.31 Aligned_cols=36 Identities=36% Similarity=0.824 Sum_probs=30.7
Q ss_pred ccccCCCccccccccccCCCC-CcchhHhhhHHHhhc
Q 002513 319 QMCCNICRIPIIDYHRHCGNC-MYDLCLSCCQDLREA 354 (914)
Q Consensus 319 RvyCDnCkTSIvD~HRSC~~C-sYDLCL~CC~ELR~g 354 (914)
.+.||.|...|....=.|..| .||||..|-.+-|.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 367999999999998899999 899999998855443
No 20
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=87.11 E-value=0.35 Score=40.23 Aligned_cols=32 Identities=34% Similarity=0.811 Sum_probs=27.8
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhHhhhHHH
Q 002513 320 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDL 351 (914)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~C-sYDLCL~CC~EL 351 (914)
+.||+|.. +|.-++=.|..| .||||+.|-..-
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence 46999998 999998899988 499999998843
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=86.19 E-value=0.38 Score=39.99 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=27.1
Q ss_pred cccCCCc-cccccccccCCCC-CcchhHhhhHH
Q 002513 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (914)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sYDLCL~CC~E 350 (914)
|.||.|+ .+|.-..=.|..| .||||+.|-..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5799999 8999888888888 69999999873
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=85.72 E-value=0.43 Score=38.49 Aligned_cols=29 Identities=38% Similarity=1.051 Sum_probs=24.9
Q ss_pred ccCCCccccccccccCCCC-CcchhHhhhHH
Q 002513 321 CCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 350 (914)
Q Consensus 321 yCDnCkTSIvD~HRSC~~C-sYDLCL~CC~E 350 (914)
-||.|.. |.-..+.|..| .||||..|-..
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 3999988 56699999999 89999999764
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.28 E-value=0.44 Score=51.85 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=24.5
Q ss_pred hCccceeEeeecCCeEEecCCCcccccccc
Q 002513 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (914)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (914)
|.+..=...=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 455555666678999999999999999974
No 24
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=81.63 E-value=0.69 Score=57.26 Aligned_cols=69 Identities=25% Similarity=0.522 Sum_probs=44.1
Q ss_pred hhhhhh-hhhhhhhhhhheehhhcccc-ccccccccCcccccccCCCccccccccccCCCCCcchhHhhhHHH
Q 002513 281 VLPVVK-QIHQIQCSEVELEKKLRGNE-IDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDL 351 (914)
Q Consensus 281 LLP~Lk-qi~~EQ~~E~EiEAkIqG~~-i~i~~a~~~~DERvyCDnCkTSIvD~HRSC~~CsYDLCL~CC~EL 351 (914)
+|+.++ ++.+.=+.|+|-=+-++-.. +....+ ....|-.|+.|-|++|++|-.|++|++-+||.|-+.-
T Consensus 191 il~~~gd~~c~~~~se~eAl~~~~~~~~~a~k~a--~~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~ 261 (889)
T KOG1356|consen 191 ILANLGDQFCQLVRSEKEALSMQRPDQKVAWKRA--VKGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKW 261 (889)
T ss_pred HhhhccchhhhhhhccchhhcccCcccccchhhc--ccCcchhhhhhcccccceeEEccccCCeeeecchhhc
Confidence 344443 55555555655322111111 222222 2356778999999999999999999999999887643
No 25
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=81.11 E-value=1.1 Score=45.89 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=44.3
Q ss_pred cCCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCccccccccccceecccccCcc
Q 002513 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (914)
Q Consensus 799 v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (914)
.+|+- ++.+|+-.-.- ++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 124 ~~h~~-~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 124 IKHQG-EEIGTVLEGEI-----VLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cccCC-cEEEEEEEeEE-----EEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 34443 56666544332 25566777888999999999999999999887766777777774
No 26
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=78.74 E-value=1.4 Score=43.36 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=27.1
Q ss_pred ceeEeeecCCeEEecCCCccccccccccceecccccCcc
Q 002513 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (914)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (914)
.=++.=..||+++||||-||+.+|...+.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 334555789999999999999999855544333 5553
No 27
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=77.55 E-value=1.4 Score=36.93 Aligned_cols=33 Identities=45% Similarity=1.023 Sum_probs=27.2
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhHhhhHHHh
Q 002513 320 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLR 352 (914)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~Cs-YDLCL~CC~ELR 352 (914)
|-||.|+. +|.-+.=.|-.|. ||||..|-..-+
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~ 35 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGR 35 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCC
Confidence 46999995 7999888888884 999999987543
No 28
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=77.38 E-value=1.9 Score=32.67 Aligned_cols=42 Identities=31% Similarity=0.817 Sum_probs=28.3
Q ss_pred ccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
|--|...- ...+.-..|+ -.||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 44555443 2234445588 78999999998753 3457999985
No 29
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=76.58 E-value=1.2 Score=33.15 Aligned_cols=27 Identities=33% Similarity=0.894 Sum_probs=12.9
Q ss_pred ccCCCcccccc-ccccCCCCCcchhHhh
Q 002513 321 CCNICRIPIID-YHRHCGNCMYDLCLSC 347 (914)
Q Consensus 321 yCDnCkTSIvD-~HRSC~~CsYDLCL~C 347 (914)
.|+.|+.+|.. +.=+|+.|.|+|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999988
No 30
>PHA02926 zinc finger-like protein; Provisional
Probab=76.10 E-value=1.1 Score=48.30 Aligned_cols=33 Identities=27% Similarity=0.761 Sum_probs=25.4
Q ss_pred cCCCCccCHhHHhhhcCCCchhhhhccCCCCCCc
Q 002513 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (914)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgi 245 (914)
+|+ -.||..||..|-.......+...||.||..
T Consensus 196 ~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 196 SCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 477 789999999998753333456789999974
No 31
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=75.70 E-value=1.4 Score=48.74 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=24.6
Q ss_pred ecCCeEEecCCCccccc---------cccccceecccccCccCHHHHHHHH
Q 002513 832 HLGEAVFIPAGCPFQVR---------NLQSTVQLGLDFLFPESVGEAVRLA 873 (914)
Q Consensus 832 ~lGEAVFIPAGCPHQVR---------NLkSCIKVAlDFVSPEnV~ec~rLt 873 (914)
+.||+||||||.||=-. |--..+. +-|+-=+=+|.+.++.+
T Consensus 156 ~~Gd~i~ipaGt~HA~~g~~~~Eiq~~SD~t~R-~~d~~r~l~ve~~l~~~ 205 (302)
T TIGR00218 156 KPGDFFYVPSGTPHAYKGGLVLEVMQNSDNVYR-AGDTDKYLDIEKLVEVL 205 (302)
T ss_pred CCCCEEEeCCCCcccccCceEEEEEcCCCcEEE-eeccCcccCHHHHHhhc
Confidence 46999999999999521 1111121 22343455666666666
No 32
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=75.23 E-value=1.9 Score=36.32 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=25.0
Q ss_pred cccCCCccccccccccCCCCC-cchhHhhhHH
Q 002513 320 MCCNICRIPIIDYHRHCGNCM-YDLCLSCCQD 350 (914)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~Cs-YDLCL~CC~E 350 (914)
+.||.|...|.-+.=.|-.|. ||||..|-..
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 359999988887766777774 9999999873
No 33
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=73.97 E-value=1.9 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.4
Q ss_pred ecCCeEEecCCCcccccccccc
Q 002513 832 HLGEAVFIPAGCPFQVRNLQST 853 (914)
Q Consensus 832 ~lGEAVFIPAGCPHQVRNLkSC 853 (914)
..||.||||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5699999999999999997654
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=73.87 E-value=1.4 Score=43.55 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.6
Q ss_pred eEeeecCCeEEecCCCccccccccc
Q 002513 828 SFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 828 tf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
+.+-..||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 35
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=73.30 E-value=1.8 Score=50.07 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.3
Q ss_pred EeeecCCeEEecCCCccc
Q 002513 829 FEQHLGEAVFIPAGCPFQ 846 (914)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQ 846 (914)
+.=++|||||||||.||=
T Consensus 239 v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEeCCCCEEEeCCCCCeE
Confidence 334689999999999996
No 36
>PHA02929 N1R/p28-like protein; Provisional
Probab=69.58 E-value=3.1 Score=45.37 Aligned_cols=46 Identities=24% Similarity=0.695 Sum_probs=31.3
Q ss_pred CCCccccccCCCC------CeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCc
Q 002513 193 GQICHQCRRNDRE------RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (914)
Q Consensus 193 g~~CHQCrqkt~~------~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgi 245 (914)
...|-=|...-.. ....=..|+ -.||..||..|.... -.||.||..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~~------~tCPlCR~~ 225 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKEK------NTCPVCRTP 225 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhcC------CCCCCCCCE
Confidence 4577777664221 122334688 789999999997643 489999973
No 37
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=69.55 E-value=1.5 Score=34.87 Aligned_cols=29 Identities=38% Similarity=0.935 Sum_probs=21.4
Q ss_pred eEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
.+.. .|+ -.||..||..|... ...||.||
T Consensus 16 ~~~l-~C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 16 VVKL-PCG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp EEEE-TTS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred EEEc-cCC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 4444 488 89999999999843 24999997
No 38
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=69.08 E-value=3.5 Score=43.46 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=30.9
Q ss_pred cceeEeeecCCeEEecCCCccccccccccceecccccCccCHH
Q 002513 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (914)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (914)
+.+.+.=..||+|+||+|..|++.|.-+.-=+.+- +.|...+
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~ 159 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAG 159 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCcc
Confidence 37889999999999999999999998654333332 4444444
No 39
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.95 E-value=4.8 Score=42.21 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=35.0
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
+-..|--|.-.....+..=++|+ -.||..||++-- ...-+||.|+.
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~al------k~~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDAL------KNTNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhhccccccccc-hhHHHHHHHHHH------HhCCCCCCccc
Confidence 34689999877776665667899 899999998543 23469999985
No 40
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=4.5 Score=43.87 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=36.2
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
+---|-=|--.-.+.++.| |+ -.||-+||.+|-.- -.-...||+|.+
T Consensus 46 ~~FdCNICLd~akdPVvTl--CG-HLFCWpClyqWl~~---~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTL--CG-HLFCWPCLYQWLQT---RPNSKECPVCKA 92 (230)
T ss_pred CceeeeeeccccCCCEEee--cc-cceehHHHHHHHhh---cCCCeeCCcccc
Confidence 3448999998888888887 89 79999999999421 123457899986
No 41
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=66.89 E-value=3 Score=47.12 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=16.3
Q ss_pred EeeecCCeEEecCCCcccc
Q 002513 829 FEQHLGEAVFIPAGCPFQV 847 (914)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQV 847 (914)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5557899999999999964
No 42
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.91 E-value=4.5 Score=45.11 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=37.6
Q ss_pred CCCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCcc
Q 002513 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSC 246 (914)
Q Consensus 191 ~~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgiC 246 (914)
.+...|-=|--... .-.|+=|+ --||-.||.-|-++.++ ||.||--|
T Consensus 237 ~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 45578999986664 34677899 78999999999998763 99999754
No 43
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.89 E-value=8.4 Score=40.92 Aligned_cols=52 Identities=27% Similarity=0.657 Sum_probs=34.0
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcC--CCch--------hhhhccCCCCCCcc
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYS--DIPL--------EELEKVCPACRGSC 246 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~--------edv~~~CP~CRgiC 246 (914)
+...|.=|...-...++ +.|+ -.||..||..|-- ..+. ..-...||.||.--
T Consensus 17 ~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred CccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcC
Confidence 34578888765555544 6799 7999999999832 1111 11246899999743
No 44
>PLN02288 mannose-6-phosphate isomerase
Probab=63.87 E-value=3.6 Score=47.81 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.3
Q ss_pred eecCCeEEecCCCccc
Q 002513 831 QHLGEAVFIPAGCPFQ 846 (914)
Q Consensus 831 Q~lGEAVFIPAGCPHQ 846 (914)
=.+|||||||||.||=
T Consensus 255 L~PGeaifl~ag~~HA 270 (394)
T PLN02288 255 LNPGEALYLGANEPHA 270 (394)
T ss_pred cCCCCEEEecCCCCce
Confidence 3589999999999995
No 45
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=62.97 E-value=4.7 Score=29.30 Aligned_cols=26 Identities=35% Similarity=1.124 Sum_probs=19.8
Q ss_pred CcCCCCccCHhHHhhhcCCCchhhhhccCCCC
Q 002513 211 VKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (914)
Q Consensus 211 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (914)
..|+ -.||..|+..|+. .....||.|
T Consensus 14 ~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 14 LPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred ecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 4588 6799999999875 234579887
No 46
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=60.70 E-value=9 Score=44.14 Aligned_cols=37 Identities=14% Similarity=0.377 Sum_probs=29.5
Q ss_pred HHHHHHh-hcCCCEEEecccccCCCC-CCchh-hhhhHHh
Q 002513 489 GNFRKHW-VKGEPVIVKQVCDSSSMS-IWDPK-DIWRGIR 525 (914)
Q Consensus 489 ~hFQ~hW-~kGePVIV~~Vl~~~s~l-sW~P~-~mwr~~~ 525 (914)
.+|=+-| .+..|||+|+.+..-.++ .|.+. ++..+++
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~alg 73 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALG 73 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhcc
Confidence 5777777 899999999999987777 88877 7765553
No 47
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=60.12 E-value=4.4 Score=47.68 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=28.6
Q ss_pred ccceeEeeecCCeEEecCCCccccccccccceecccccCcc
Q 002513 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (914)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (914)
|..=++.=..||.|+||+|.||+.+|.-+--=+.+--.+|+
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 44456667899999999999999999876433333333444
No 48
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=59.48 E-value=7.5 Score=38.22 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.4
Q ss_pred eEeee----cCCeEEecCCCccccccc--cccceeccccc-CccC
Q 002513 828 SFEQH----LGEAVFIPAGCPFQVRNL--QSTVQLGLDFL-FPES 865 (914)
Q Consensus 828 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 865 (914)
.+.|. .||.++||+|.||=+.|. .+.+.++.=++ +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 45565 899999999999999999 56666655443 3434
No 49
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=59.26 E-value=4.5 Score=33.09 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=30.8
Q ss_pred CCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 194 QICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 194 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
..|.-|...... +.-..|+...||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCGHLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCCChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 467788877654 333468844499999999986 4469999996
No 50
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=57.52 E-value=6.9 Score=31.32 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=24.9
Q ss_pred ccccccCCCCCeEecCcCCCCccCHhHHhhhcCCC
Q 002513 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDI 230 (914)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~ 230 (914)
|+.|++++.-....|..|+ +.||. .-||++.
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e~ 31 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPED 31 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCccc
Confidence 8999999976568899999 78875 5677665
No 51
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.03 E-value=7.6 Score=45.27 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=35.2
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCccc
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCN 247 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgiCN 247 (914)
...+|.-|..--...++ +.|+ -.||..||..+.... ..||.|+..+.
T Consensus 25 ~~l~C~IC~d~~~~Pvi--tpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVL--TSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhhCccC--CCCC-CchhHHHHHHHHhCC------CCCCCCCCccc
Confidence 45699999865544442 5799 899999999987643 37999998654
No 52
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=56.00 E-value=5.9 Score=43.97 Aligned_cols=31 Identities=32% Similarity=0.766 Sum_probs=27.3
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhHhhhHH
Q 002513 320 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 350 (914)
Q Consensus 320 vyCDnCkT-SIvD~HRSC~~Cs-YDLCL~CC~E 350 (914)
+-||+|.+ .|+-.-=.|.-|. ||||-.|=..
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 67999999 9999888888884 9999999764
No 54
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=55.54 E-value=7.7 Score=30.21 Aligned_cols=29 Identities=28% Similarity=0.898 Sum_probs=22.1
Q ss_pred eEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCC
Q 002513 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (914)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (914)
.+.-..|+ -.||..|+.++... ...||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHC------TSB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHC------cCCCcCC
Confidence 44677899 78999999998654 2699987
No 55
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=54.82 E-value=5.9 Score=31.90 Aligned_cols=28 Identities=25% Similarity=0.850 Sum_probs=19.3
Q ss_pred cCCCCccCHhHHhhhcCCCchhhhhccCCCC
Q 002513 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (914)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (914)
.|+ -.||..||.++..+.. ...+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 588 7999999999987653 223889987
No 56
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=54.63 E-value=6.1 Score=28.80 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.1
Q ss_pred ccccCCCccccccccccCCCCCcch
Q 002513 319 QMCCNICRIPIIDYHRHCGNCMYDL 343 (914)
Q Consensus 319 RvyCDnCkTSIvD~HRSC~~CsYDL 343 (914)
.++|.+|.+.|-+=.+-|++|...|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 4789999999999999999998765
No 57
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=52.81 E-value=6.1 Score=40.14 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCc
Q 002513 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 844 (914)
Q Consensus 800 ~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCP 844 (914)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 568999999999999999999999999987 6799999988864
No 58
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=52.37 E-value=9.7 Score=31.54 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=26.1
Q ss_pred cccCCCc-cccccccccCCCC-CcchhHhhhHH
Q 002513 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (914)
Q Consensus 320 vyCDnCk-TSIvD~HRSC~~C-sYDLCL~CC~E 350 (914)
+-||.|. ++|+=.-=.|..| .||||-.|-.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 4599998 4999988889977 59999999764
No 59
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=52.07 E-value=7.6 Score=46.23 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.0
Q ss_pred CccceeEeeecCCeEEecCCCccccccccc
Q 002513 823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 823 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
.|..=++.=..||.|+||+|.||+.+|.-.
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 344445556899999999999999999854
No 60
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=51.15 E-value=7.5 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002513 321 CCNICRIPIIDYHRHCGNCMYDL 343 (914)
Q Consensus 321 yCDnCkTSIvD~HRSC~~CsYDL 343 (914)
||-+|...|-|=.+-|++|...|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 79999999999999999998765
No 61
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=50.40 E-value=14 Score=29.65 Aligned_cols=42 Identities=26% Similarity=0.674 Sum_probs=28.0
Q ss_pred ccccccCCC-CCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 196 CHQCRRNDR-ERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 196 CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
|-.|.+.-. ....+=++|+ -.||..||.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 455655552 2223334688 789999999888 33458999973
No 62
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.38 E-value=5.2 Score=49.40 Aligned_cols=45 Identities=24% Similarity=0.710 Sum_probs=32.0
Q ss_pred CCCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 191 ~~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
.+-.+|--|...-.+ +.=++|+ -.||..|++.||.- -.-+||.|-
T Consensus 641 K~~LkCs~Cn~R~Kd--~vI~kC~-H~FC~~Cvq~r~et-----RqRKCP~Cn 685 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKD--AVITKCG-HVFCEECVQTRYET-----RQRKCPKCN 685 (698)
T ss_pred HhceeCCCccCchhh--HHHHhcc-hHHHHHHHHHHHHH-----hcCCCCCCC
Confidence 355689999833333 2334788 78999999999953 346999863
No 63
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.67 E-value=14 Score=36.45 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=34.6
Q ss_pred cCCCCcCCceeeCHH-HHHHHHHHhCccceeEeeecCCeEEecCCCcccccccc
Q 002513 799 VTHPLYGEVVYLNGD-HKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (914)
Q Consensus 799 v~dPIHDQ~fYLt~~-hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (914)
..||-.++-+|+-.- ..-.+-++.|=+-+++.-..||+++||+|-+|+..|.-
T Consensus 46 h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 46 HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 345555566665432 22111122223557888899999999999999999974
No 64
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.43 E-value=9.5 Score=39.24 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=23.9
Q ss_pred CceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCcccccccc
Q 002513 806 EVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (914)
Q Consensus 806 Q~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (914)
.+.||...+ ++|.-+|=.|.=..+.-..||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 346676333 37899999999999999999999999999964
No 65
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=47.65 E-value=17 Score=40.81 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=30.9
Q ss_pred eeEeeecCCeEEecCCCccccccccccceecccccCccCHH
Q 002513 827 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (914)
Q Consensus 827 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (914)
..|+=.+||..+||.|++|++.....|+.+.+-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 35677899999999999999999999999999999884433
No 66
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=47.08 E-value=7.7 Score=30.09 Aligned_cols=29 Identities=24% Similarity=0.920 Sum_probs=21.8
Q ss_pred ecCcCCCCccCHhHHhhhcCCCchhhhhccCCCC
Q 002513 209 WCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (914)
Q Consensus 209 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (914)
.=..|+ -.||..||.+++.. .....||.|
T Consensus 13 ~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 13 ILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp EETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred EEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 345688 78999999999863 334579987
No 67
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=46.52 E-value=13 Score=42.75 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=50.1
Q ss_pred CCccCCCCcCCceeeCH-HHHHHHHHHhCccceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHHHHHH
Q 002513 796 NDFVTHPLYGEVVYLNG-DHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAE 874 (914)
Q Consensus 796 ~~~v~dPIHDQ~fYLt~-~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLte 874 (914)
.....||--+..+|+-. +-+..+-..-| ...+|.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++
T Consensus 258 ~~~H~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~ 335 (367)
T TIGR03404 258 RELHWHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQ 335 (367)
T ss_pred cCCeeCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHH
Confidence 34457887666555533 33222111111 356677789999999999999999997643333333333333222 2666
Q ss_pred HHhcCCcc
Q 002513 875 EIRCLPND 882 (914)
Q Consensus 875 EfR~Lp~~ 882 (914)
=+..+|.+
T Consensus 336 ~l~~~p~~ 343 (367)
T TIGR03404 336 WLALTPPQ 343 (367)
T ss_pred HHhhCCHH
Confidence 66667654
No 68
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=45.13 E-value=15 Score=40.17 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCccccccccc
Q 002513 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 801 dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
|+-.++-+|+-.---. .-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l~-----v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEVN-----VTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEEE-----EEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 4444556666443221 2345667777889999999999999999863
No 69
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=45.10 E-value=3.2 Score=33.78 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=30.3
Q ss_pred CccccccCC-CCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 195 ICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 195 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
+|+-|++.. .+.++.|..|+ ..|=..|+.............|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCC-hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 477888855 47799999999 4555555553322111112279999885
No 70
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.31 E-value=9.9 Score=44.56 Aligned_cols=32 Identities=31% Similarity=0.906 Sum_probs=28.4
Q ss_pred cccccCCCcccccccc-ccCCCCC-cchhHhhhH
Q 002513 318 EQMCCNICRIPIIDYH-RHCGNCM-YDLCLSCCQ 349 (914)
Q Consensus 318 ERvyCDnCkTSIvD~H-RSC~~Cs-YDLCL~CC~ 349 (914)
+--.||+|..-|-+.- -.|-.|. |||||-|..
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 4567999999999875 7999999 999999986
No 71
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=41.76 E-value=9.2 Score=35.58 Aligned_cols=69 Identities=22% Similarity=0.374 Sum_probs=43.1
Q ss_pred ccCCChHHHHHHHHHHHhhcCCCCCCCC--CccCCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCccc
Q 002513 769 FRRQDVPKLIEYLREHWTDFGRPDGVTN--DFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQ 846 (914)
Q Consensus 769 FrreDv~KLreyL~kh~~Ef~~~~~~p~--~~v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQ 846 (914)
|.|...++|.+|.++.-. -+..+ ..+ .....||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.
T Consensus 23 ~srk~id~l~~~ak~~ga-~gL~~-ikv~~~~~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~ 90 (95)
T PF02938_consen 23 LSRKQIDKLEEFAKKFGA-KGLAW-IKVEEGELKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEI 90 (95)
T ss_dssp TTHCCCCCCCCHHHHCCH-CHCCC-EEESTCEEECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCcee-eeEcCCcccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHH
Confidence 455666666666653211 11111 000 223455533 599999999999999985 9999999999888
Q ss_pred ccc
Q 002513 847 VRN 849 (914)
Q Consensus 847 VRN 849 (914)
|++
T Consensus 91 v~~ 93 (95)
T PF02938_consen 91 VNK 93 (95)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 72
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=41.35 E-value=14 Score=41.48 Aligned_cols=42 Identities=29% Similarity=0.774 Sum_probs=31.8
Q ss_pred CCCccccccCCCCCeEecC-cCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 193 GQICHQCRRNDRERVVWCV-KCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 193 g~~CHQCrqkt~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
...||-|.-- ..+.|- .|+ --||.-||++..++-+ -||+||-
T Consensus 25 ~lrC~IC~~~---i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 25 MLRCRICDCR---ISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred HHHhhhhhhe---eecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 3478888532 245664 588 7899999999999876 7999985
No 73
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=40.93 E-value=9.8 Score=43.76 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=13.0
Q ss_pred eecCCeEEecCCCccc
Q 002513 831 QHLGEAVFIPAGCPFQ 846 (914)
Q Consensus 831 Q~lGEAVFIPAGCPHQ 846 (914)
=.+|||+|+|||-||-
T Consensus 254 L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 254 LQPGEAIFLPAGEPHA 269 (373)
T ss_dssp E-TT-EEEEHTTHHEE
T ss_pred ecCCceEEecCCCccc
Confidence 3589999999999997
No 74
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=11 Score=42.40 Aligned_cols=45 Identities=24% Similarity=0.691 Sum_probs=31.5
Q ss_pred eEecCcCC-CCccCHhHHhhhcCCCchhhh--------hccCCCCCCccccccccccCC
Q 002513 207 VVWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRGSCNCKACLRADN 256 (914)
Q Consensus 207 ~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~CRgiCNCs~Clr~~g 256 (914)
-..|.+|- |-..|..||.+||-.-. +++ +-.||-||. ++|.+.--
T Consensus 317 ga~c~nc~crp~wc~~cla~~f~~rq-~~v~r~~~~~~~~~cp~cr~----~fci~dv~ 370 (381)
T KOG3899|consen 317 GAPCENCICRPLWCRSCLAQIFIGRQ-DNVYRYEYHRGSAQCPTCRK----NFCIRDVH 370 (381)
T ss_pred CCcccccccccHHHHHHHHHHHhhcc-cchhHHHHHhcCCCCcchhh----ceEEeeee
Confidence 35777766 57899999999986643 222 458999887 46665543
No 75
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=39.62 E-value=13 Score=36.89 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=36.6
Q ss_pred CCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCC
Q 002513 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 843 (914)
Q Consensus 800 ~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGC 843 (914)
.-|.|...-.+.+.+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 17 ~a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 17 NAPLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred cCCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 457788888888888899999999999977 589999999985
No 76
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=37.50 E-value=9.2 Score=43.29 Aligned_cols=30 Identities=33% Similarity=0.992 Sum_probs=26.5
Q ss_pred cccCCCccccccc-cccCCCC-CcchhHhhhH
Q 002513 320 MCCNICRIPIIDY-HRHCGNC-MYDLCLSCCQ 349 (914)
Q Consensus 320 vyCDnCkTSIvD~-HRSC~~C-sYDLCL~CC~ 349 (914)
..||.|..-|.|. |-+|-.| .||||+-|.-
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 5699999999986 5689999 9999999975
No 77
>PRK04023 DNA polymerase II large subunit; Validated
Probab=36.97 E-value=19 Score=46.22 Aligned_cols=33 Identities=21% Similarity=0.552 Sum_probs=24.5
Q ss_pred CCCCCCCCccccccCCCCCeEecCcCCC----CccCHhH
Q 002513 188 SEDTGGQICHQCRRNDRERVVWCVKCDK----RGYCDSC 222 (914)
Q Consensus 188 ~~~~~g~~CHQCrqkt~~~~v~C~~C~r----~~FC~~C 222 (914)
+.+.+.+.|..|.+.+. ...|.+|+. ..||..|
T Consensus 621 eVEVg~RfCpsCG~~t~--~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 621 EVEIGRRKCPSCGKETF--YRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred eecccCccCCCCCCcCC--cccCCCCCCCCCcceeCccc
Confidence 44567889999999874 578999983 3566666
No 78
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=36.75 E-value=21 Score=26.48 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=20.5
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002513 321 CCNICRIPIIDYHRHCGNCMYDL 343 (914)
Q Consensus 321 yCDnCkTSIvD~HRSC~~CsYDL 343 (914)
.|..|..-|-.--+.||.|.|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48899999999999999999974
No 79
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=35.27 E-value=17 Score=41.85 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=35.1
Q ss_pred eeccCCChHHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHH--------HHHHHHHHhCccceeEee-ecCCeE
Q 002513 767 DVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGD--------HKRKLKEEFGVEPWSFEQ-HLGEAV 837 (914)
Q Consensus 767 DIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~--------hk~rLkeEyGVepWtf~Q-~lGEAV 837 (914)
|=||-+-.++|+..|++-+-.++... ||-... .|=....-||.---|=.| -.-|||
T Consensus 242 ~eyrDehfdfiq~~lRkFCLr~GaaL---------------iyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaV 306 (473)
T KOG3905|consen 242 HEYRDEHFDFIQSHLRKFCLRYGAAL---------------IYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAV 306 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHcCcee---------------EEeecccccchHHHHHHHHHHhcCcccCCcceEeeccee
Confidence 45777777888888877666544331 222111 111112346654433333 346999
Q ss_pred EecCCCc
Q 002513 838 FIPAGCP 844 (914)
Q Consensus 838 FIPAGCP 844 (914)
|||||--
T Consensus 307 fIPAGWD 313 (473)
T KOG3905|consen 307 FIPAGWD 313 (473)
T ss_pred EeccCCC
Confidence 9999963
No 80
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=34.74 E-value=27 Score=31.17 Aligned_cols=26 Identities=35% Similarity=0.848 Sum_probs=20.4
Q ss_pred CcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 211 VKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 211 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
..|+ -.|-..||.+|..... .||.||
T Consensus 48 ~~C~-H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 48 GPCG-HIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp ETTS-EEEEHHHHHHHHTTSS------B-TTSS
T ss_pred cccC-CCEEHHHHHHHHhcCC------cCCCCC
Confidence 3587 7999999999986543 999998
No 81
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=34.30 E-value=27 Score=36.77 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=47.4
Q ss_pred CCcee-eCHHHHHHHHHHhCccceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHH
Q 002513 805 GEVVY-LNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAV 870 (914)
Q Consensus 805 DQ~fY-Lt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~ 870 (914)
|..|| |.-++.-++.+ +=+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.++
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~~ 119 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDGF 119 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccce
Confidence 55666 44444433333 223467888999999999999999988999999999988888765533
No 82
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=33.10 E-value=28 Score=36.05 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=40.5
Q ss_pred cceeEeeecCCeEEecCCCccccccccccceecccccCccCHHHHH
Q 002513 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAV 870 (914)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~ 870 (914)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...++
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~ 113 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGF 113 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcce
Confidence 3567888899999999999999988999999999999999887643
No 83
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=32.69 E-value=18 Score=32.60 Aligned_cols=15 Identities=40% Similarity=1.429 Sum_probs=10.7
Q ss_pred ccCHhHHhhhcCCCc
Q 002513 217 GYCDSCISTWYSDIP 231 (914)
Q Consensus 217 ~FC~~CL~~rY~e~~ 231 (914)
.||..||.+||.+-.
T Consensus 11 gFCRNCLskWy~~aA 25 (68)
T PF06844_consen 11 GFCRNCLSKWYREAA 25 (68)
T ss_dssp S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999997643
No 84
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=31.83 E-value=26 Score=41.00 Aligned_cols=46 Identities=37% Similarity=0.552 Sum_probs=39.7
Q ss_pred CcccccccccCCCCCCeeecCC--CcccccccHHHH-HHHhhcCCCEEEe
Q 002513 458 DHSLCQYAHREDRDGNFLYCPS--SHDIRSEGIGNF-RKHWVKGEPVIVK 504 (914)
Q Consensus 458 ~~~~r~aA~re~s~dn~ly~P~--~~d~~~~~l~hF-Q~hW~kGePVIV~ 504 (914)
-+.|-+||+|- +-.|-||||. ...+...+|.+| ++|..+|.-|||.
T Consensus 158 ~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 158 IEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 35678999999 7889999996 778888999999 6899999999885
No 85
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=31.41 E-value=35 Score=37.74 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.2
Q ss_pred HhCccceeEeeecCCeEEecCCCccccccccccc
Q 002513 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 854 (914)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 854 (914)
.|-|.+-++.-..||+||||+|.||+......|-
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3667888899999999999999999986655553
No 86
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.74 E-value=46 Score=37.87 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=30.1
Q ss_pred CCccccccCCC---CC--eEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 194 QICHQCRRNDR---ER--VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 194 ~~CHQCrqkt~---~~--~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
.+|--|..... .. ++. .|+ -.||..||.+-+..-. ..||.|+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CG-H~~C~sCv~~l~~~~~-----~~CP~C~~ 51 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCG-HTLCESCVDLLFVRGS-----GSCPECDT 51 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCC-CcccHHHHHHHhcCCC-----CCCCCCCC
Confidence 57999987542 21 333 688 7999999999764332 38998864
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.73 E-value=47 Score=38.48 Aligned_cols=54 Identities=20% Similarity=0.634 Sum_probs=35.4
Q ss_pred CCCCCccccccCCCCCe------------------EecCcCC-CCccCHhHHhhhcCCCchhhh--------hccCCCCC
Q 002513 191 TGGQICHQCRRNDRERV------------------VWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACR 243 (914)
Q Consensus 191 ~~g~~CHQCrqkt~~~~------------------v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~CR 243 (914)
.....|--|.|....-+ ..|..|. |-..|..|+.+||---- +.. +-.||.||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQ-d~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQ-DQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcC-CCCChhhhhcCCCCCCCCc
Confidence 34556777776654322 2566666 67899999999986442 221 35899999
Q ss_pred Cc
Q 002513 244 GS 245 (914)
Q Consensus 244 gi 245 (914)
..
T Consensus 348 a~ 349 (358)
T PF10272_consen 348 AK 349 (358)
T ss_pred cc
Confidence 74
No 88
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=29.42 E-value=42 Score=38.79 Aligned_cols=53 Identities=15% Similarity=0.299 Sum_probs=34.5
Q ss_pred cceeEeeecCCeEEecCCCccccccccccceecc-----cccCccCHHHHHHHHHHHhcCCc
Q 002513 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGL-----DFLFPESVGEAVRLAEEIRCLPN 881 (914)
Q Consensus 825 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPEnV~ec~rLteEfR~Lp~ 881 (914)
+-+++.=..||.++||+|.+|-.+|+..=..+.+ .|-|+..+. ++.=|+.+|.
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~~----~~~~l~~~p~ 165 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTFL----VTDWLAHTPK 165 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCcceee----HHHHHHhCCH
Confidence 4455567899999999999999999854333333 355565332 3444454554
No 89
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=29.08 E-value=51 Score=27.52 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=29.0
Q ss_pred CccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCc
Q 002513 195 ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (914)
Q Consensus 195 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgi 245 (914)
.|-=|++--...++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 35555555444443 4677 78999999999854 4589998763
No 90
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=38 Score=40.68 Aligned_cols=83 Identities=19% Similarity=0.496 Sum_probs=52.1
Q ss_pred CcCCCCcccccccccCCCCCccccCC-CCCCCCCCCCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhh
Q 002513 158 HSGMDSSRNRSQRSFDPSPTMEYSEG-SMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELE 236 (914)
Q Consensus 158 ~~~~d~~~~~~~Rs~~~~~~~~~~~~-~~~~~~~~~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~ 236 (914)
..++| ...-..++.|||+.+.+.+. -...+. ...|--|--.-.-.+ =++|+ -.||.+||.+... ..
T Consensus 154 ~fvv~-~gd~~~qn~dpD~p~~~e~i~qv~~~t---~~~CPICL~~~~~p~--~t~CG-HiFC~~CiLqy~~-~s----- 220 (513)
T KOG2164|consen 154 RFVVD-EGDYVLQNTDPDAPVDWEDIFQVYGST---DMQCPICLEPPSVPV--RTNCG-HIFCGPCILQYWN-YS----- 220 (513)
T ss_pred heeec-ccchhhhccCCccccchHHhhhhhcCc---CCcCCcccCCCCccc--ccccC-ceeeHHHHHHHHh-hh-----
Confidence 34455 44555588899888766653 111111 556777765543211 12588 7999999998643 21
Q ss_pred ccCCCCCCccccccccccCCc
Q 002513 237 KVCPACRGSCNCKACLRADNM 257 (914)
Q Consensus 237 ~~CP~CRgiCNCs~Clr~~g~ 257 (914)
.|++-|.|..|+..-++
T Consensus 221 ----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 221 ----AIKGPCSCPICRSTITL 237 (513)
T ss_pred ----cccCCccCCchhhhccc
Confidence 67888899999887654
No 91
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=28.43 E-value=34 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=26.4
Q ss_pred CCccccccCC--CCCeEecCcCCCCccCHhHHhhhcC
Q 002513 194 QICHQCRRND--RERVVWCVKCDKRGYCDSCISTWYS 228 (914)
Q Consensus 194 ~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 228 (914)
..|+.|.++= ..+...|..|+ ..||..|...+-.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCc-CCcChHHcCCeee
Confidence 4788888544 24567899999 7899999997744
No 92
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=28.33 E-value=31 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=12.2
Q ss_pred EeeecCCeEEecCCCc
Q 002513 829 FEQHLGEAVFIPAGCP 844 (914)
Q Consensus 829 f~Q~lGEAVFIPAGCP 844 (914)
..=..||+||||+|..
T Consensus 46 ~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 46 VTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEETTEEEEE-TTEE
T ss_pred EEEcCCcEEEECCCCE
Confidence 4447899999999984
No 93
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=28.31 E-value=25 Score=40.38 Aligned_cols=34 Identities=35% Similarity=0.935 Sum_probs=27.6
Q ss_pred cccccccCCCccccccccc-cCCCCC-cchhHhhhH
Q 002513 316 ADEQMCCNICRIPIIDYHR-HCGNCM-YDLCLSCCQ 349 (914)
Q Consensus 316 ~DERvyCDnCkTSIvD~HR-SC~~Cs-YDLCL~CC~ 349 (914)
--|+|-||.|.---|-|.| -|-.|+ ||||-+|--
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 4588999999877777766 488886 999999975
No 94
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=28.07 E-value=34 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCcc
Q 002513 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPF 845 (914)
Q Consensus 800 ~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPH 845 (914)
.-|+|...-++...+=+.|.++||++.+.| +-||-|.|=+|==.
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~K 56 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDFK 56 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCCC
Confidence 568999999999999999999999999966 78999999998643
No 95
>PRK11171 hypothetical protein; Provisional
Probab=27.91 E-value=43 Score=36.77 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=23.4
Q ss_pred ccceeEeeecCCeEEecCCCcccccccc
Q 002513 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (914)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (914)
|..=+++=..||.|+||+|.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3444667778999999999999999975
No 96
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=27.55 E-value=33 Score=43.09 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=27.5
Q ss_pred CCCccccccCCCC-------CeEecCcCCCCccCHhHHhhh
Q 002513 193 GQICHQCRRNDRE-------RVVWCVKCDKRGYCDSCISTW 226 (914)
Q Consensus 193 g~~CHQCrqkt~~-------~~v~C~~C~r~~FC~~CL~~r 226 (914)
...|+.|+++-.. +.-.|++|+ ..||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 4689999988742 455699999 89999999887
No 97
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.18 E-value=65 Score=33.88 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=37.0
Q ss_pred CccccccC----CCCCeEecCcCCCCccCHhHHhhhcCCCch------hhhhccCCCCCCc
Q 002513 195 ICHQCRRN----DRERVVWCVKCDKRGYCDSCISTWYSDIPL------EELEKVCPACRGS 245 (914)
Q Consensus 195 ~CHQCrqk----t~~~~v~C~~C~r~~FC~~CL~~rY~e~~~------edv~~~CP~CRgi 245 (914)
+|+.|... .++.+|.|..|. ..|=-.||-.|-.-... +.+.-.|-+|.|+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 58889542 468899999999 78888899888654321 3445789888875
No 98
>PRK11171 hypothetical protein; Provisional
Probab=26.84 E-value=36 Score=37.36 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=27.4
Q ss_pred HhCccceeEeeecCCeEEecCCCcccccccc
Q 002513 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (914)
Q Consensus 821 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (914)
+|.+..-++.=..||++++|+++||+.+|.-
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 3677888888899999999999999999974
No 99
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=26.25 E-value=51 Score=34.60 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHHHHHHHHHHhCccceeEee-ecCCeEEecCCCcccc
Q 002513 775 PKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGCPFQV 847 (914)
Q Consensus 775 ~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q-~lGEAVFIPAGCPHQV 847 (914)
+||..|...|..++. .+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.=|--
T Consensus 80 eKvk~FfEEhlh~de---------eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHRF 136 (179)
T KOG2107|consen 80 EKVKSFFEEHLHEDE---------EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHRF 136 (179)
T ss_pred HHHHHHHHHhcCchh---------heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceeee
Confidence 577777765544322 345567888999888765 6675444 4699999999998863
No 100
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.08 E-value=14 Score=35.01 Aligned_cols=15 Identities=40% Similarity=1.438 Sum_probs=13.2
Q ss_pred ccCHhHHhhhcCCCc
Q 002513 217 GYCDSCISTWYSDIP 231 (914)
Q Consensus 217 ~FC~~CL~~rY~e~~ 231 (914)
.||..||.+||.+-.
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999998764
No 101
>PF12852 Cupin_6: Cupin
Probab=25.79 E-value=40 Score=34.24 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=28.3
Q ss_pred cCCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCCccccccccc
Q 002513 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 799 v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
..|=+-..++||.-.- +-+| +.=..||.||+|.|.+|...--..
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~~--~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGEP--IRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCCe--EEecCCCEEEEcCCCCeEeCCCCC
Confidence 3566666667776211 1122 444679999999999999854433
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=25.30 E-value=30 Score=30.04 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=20.1
Q ss_pred CcccccccCCCccccccccccCC----CCCc
Q 002513 315 SADEQMCCNICRIPIIDYHRHCG----NCMY 341 (914)
Q Consensus 315 ~~DERvyCDnCkTSIvD~HRSC~----~CsY 341 (914)
+.|+.|.|.-|.|+ |||.|. .|++
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 46888999999998 899997 5654
No 103
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=25.29 E-value=38 Score=28.18 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=24.3
Q ss_pred ccCCCccccccccccCCCCC-cchhHhhhHH
Q 002513 321 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQD 350 (914)
Q Consensus 321 yCDnCkTSIvD~HRSC~~Cs-YDLCL~CC~E 350 (914)
.||.|..-+...+=+|.++. ||||-.|-.+
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhC
Confidence 48888887777666788776 9999999984
No 104
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.00 E-value=41 Score=39.58 Aligned_cols=25 Identities=28% Similarity=0.765 Sum_probs=22.4
Q ss_pred CCCeEecCcCCCCccCHhHHhhhcCC
Q 002513 204 RERVVWCVKCDKRGYCDSCISTWYSD 229 (914)
Q Consensus 204 ~~~~v~C~~C~r~~FC~~CL~~rY~e 229 (914)
-..++.|++|+ -.||.-|...|.|-
T Consensus 290 ~~~l~~CskCn-FaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 290 GRALAICSKCN-FAFCTLCKLTWHGV 314 (445)
T ss_pred hhhhhhhccCc-cHHHHHHHHhhcCC
Confidence 35689999999 89999999999993
No 105
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=24.89 E-value=24 Score=44.65 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccccCCCCCeEecCcCCC----CccCHhHHh
Q 002513 187 SSEDTGGQICHQCRRNDRERVVWCVKCDK----RGYCDSCIS 224 (914)
Q Consensus 187 ~~~~~~g~~CHQCrqkt~~~~v~C~~C~r----~~FC~~CL~ 224 (914)
...+.+.+.|-+|..-|. ...|..|+. ..+|..|-.
T Consensus 649 i~vei~~r~Cp~Cg~~t~--~~~Cp~CG~~T~~~~~Cp~C~~ 688 (900)
T PF03833_consen 649 IEVEIGRRRCPKCGKETF--YNRCPECGSHTEPVYVCPDCGI 688 (900)
T ss_dssp ------------------------------------------
T ss_pred eEEeeecccCcccCCcch--hhcCcccCCccccceecccccc
Confidence 344467789999998887 668988882 355666644
No 106
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.93 E-value=37 Score=25.52 Aligned_cols=26 Identities=35% Similarity=1.073 Sum_probs=21.4
Q ss_pred cCCCccccccc-cccCCCCCcchhHhh
Q 002513 322 CNICRIPIIDY-HRHCGNCMYDLCLSC 347 (914)
Q Consensus 322 CDnCkTSIvD~-HRSC~~CsYDLCL~C 347 (914)
|+.|...|-.+ -=+|..|.|.|-+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 78888888888 778888888887776
No 107
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=39 Score=34.70 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=34.2
Q ss_pred CCCCCccccccCCCCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 191 ~~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
..-..|.-|...=... ....|+ -.||..||...-. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 3456888898777655 444578 7999999998776 458999999
No 108
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=23.75 E-value=45 Score=25.16 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHhhcC
Q 002513 773 DVPKLIEYLREHWTDFG 789 (914)
Q Consensus 773 Dv~KLreyL~kh~~Ef~ 789 (914)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999887753
No 109
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=23.74 E-value=34 Score=37.87 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred cccCCCccccccccccCCCCCc
Q 002513 320 MCCNICRIPIIDYHRHCGNCMY 341 (914)
Q Consensus 320 vyCDnCkTSIvD~HRSC~~CsY 341 (914)
--|+||.+-+.-|.-+||+|+.
T Consensus 83 ~~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 83 GKCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhhccccceeeehhhcCCCCCc
Confidence 4599999999999999999975
No 110
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=23.69 E-value=59 Score=30.63 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=33.6
Q ss_pred CCccccccCCC-CCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 194 QICHQCRRNDR-ERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 194 ~~CHQCrqkt~-~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
-.|..|+-... -.++.++ |+ -.|=..||.+|-... ..+-.||-||.
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~-C~-H~FH~hCI~kWl~~~---~~~~~CPmCR~ 79 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK-CS-HNFHMHCILKWLSTQ---SSKGQCPMCRQ 79 (85)
T ss_pred cCCCCccCCCCCCceeecc-Cc-cHHHHHHHHHHHccc---cCCCCCCCcCC
Confidence 36777776553 3556554 88 789999999998743 33579999995
No 111
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.64 E-value=40 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=21.3
Q ss_pred CCCeEecCcCCCCccCHhHHhhhcCCC
Q 002513 204 RERVVWCVKCDKRGYCDSCISTWYSDI 230 (914)
Q Consensus 204 ~~~~v~C~~C~r~~FC~~CL~~rY~e~ 230 (914)
....+.|..|+ ..||..|...|-+.+
T Consensus 37 ~~~~v~C~~C~-~~fC~~C~~~~H~~~ 62 (64)
T smart00647 37 GCNRVTCPKCG-FSFCFRCKVPWHSPV 62 (64)
T ss_pred CCCeeECCCCC-CeECCCCCCcCCCCC
Confidence 34589999999 899999998886654
No 112
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.52 E-value=34 Score=43.83 Aligned_cols=33 Identities=24% Similarity=0.882 Sum_probs=25.6
Q ss_pred eEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCC
Q 002513 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (914)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRg 244 (914)
--+|..|+ ..|=+.||.+|+.- -..-.||.||-
T Consensus 1488 skrC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1488 SKRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred ccccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 34788888 68999999999853 33568999983
No 113
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.09 E-value=34 Score=39.40 Aligned_cols=31 Identities=32% Similarity=0.963 Sum_probs=23.9
Q ss_pred cCCCCccCHhHHhhhc--CCCchhhhhccCCCCCC
Q 002513 212 KCDKRGYCDSCISTWY--SDIPLEELEKVCPACRG 244 (914)
Q Consensus 212 ~C~r~~FC~~CL~~rY--~e~~~edv~~~CP~CRg 244 (914)
+|. -.||..||.+|= ... ...+...||.||.
T Consensus 186 nC~-H~~Cl~Cir~wr~~~q~-~~~~sksCP~CRv 218 (344)
T KOG1039|consen 186 NCN-HSFCLNCIRKWRQATQF-ESKTSKSCPFCRV 218 (344)
T ss_pred Ccc-hhhhhcHhHhhhhhhcc-ccccccCCCcccC
Confidence 366 789999999995 332 3456789999997
No 114
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.05 E-value=52 Score=31.68 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=23.4
Q ss_pred ccCcccccccCCCcccccc-------ccccCCCCCcc
Q 002513 313 KLSADEQMCCNICRIPIID-------YHRHCGNCMYD 342 (914)
Q Consensus 313 ~~~~DERvyCDnCkTSIvD-------~HRSC~~CsYD 342 (914)
....+--+.|.+|....+. .|+.|++|.|-
T Consensus 15 k~klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 15 KPKLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred ccCCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 3444556789999977776 79999999983
No 115
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.64 E-value=44 Score=37.28 Aligned_cols=47 Identities=28% Similarity=0.737 Sum_probs=34.9
Q ss_pred CCCCccccccCCCCCeEecCcCCCCccCHhHHhh-hcCCCchhhhhccCCCCCCcc
Q 002513 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCIST-WYSDIPLEELEKVCPACRGSC 246 (914)
Q Consensus 192 ~g~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~-rY~e~~~edv~~~CP~CRgiC 246 (914)
+...|-=|--... ...|+-|+ ..||-.||.- |--.-. ..||.||-.|
T Consensus 214 ~d~kC~lC~e~~~--~ps~t~Cg-HlFC~~Cl~~~~t~~k~-----~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPE--VPSCTPCG-HLFCLSCLLISWTKKKY-----EFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccC--Cccccccc-chhhHHHHHHHHHhhcc-----ccCchhhhhc
Confidence 3457999987665 66789999 8999999987 533222 3699999754
No 116
>PF14369 zf-RING_3: zinc-finger
Probab=22.49 E-value=39 Score=26.61 Aligned_cols=20 Identities=45% Similarity=0.954 Sum_probs=11.7
Q ss_pred CccccccCCC-----CCeEecCcCC
Q 002513 195 ICHQCRRNDR-----ERVVWCVKCD 214 (914)
Q Consensus 195 ~CHQCrqkt~-----~~~v~C~~C~ 214 (914)
.||||++.-. ...+.|..|+
T Consensus 4 wCh~C~~~V~~~~~~~~~~~CP~C~ 28 (35)
T PF14369_consen 4 WCHQCNRFVRIAPSPDSDVACPRCH 28 (35)
T ss_pred eCccCCCEeEeCcCCCCCcCCcCCC
Confidence 5888886542 2233466666
No 117
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=21.94 E-value=42 Score=28.84 Aligned_cols=30 Identities=30% Similarity=0.629 Sum_probs=18.3
Q ss_pred eEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCCCc
Q 002513 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (914)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CRgi 245 (914)
.++|.+|++. ..+.++. ..++.+||.|+.+
T Consensus 4 eiRC~~Cnkl-------La~~g~~--~~leIKCpRC~ti 33 (51)
T PF10122_consen 4 EIRCGHCNKL-------LAKAGEV--IELEIKCPRCKTI 33 (51)
T ss_pred ceeccchhHH-------HhhhcCc--cEEEEECCCCCcc
Confidence 4688888842 1222322 3567899999853
No 118
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.90 E-value=16 Score=35.40 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=32.9
Q ss_pred CCCCCccccccCC---CCCeEecCcCCCCccCHhHHhhhcCCCchhhhhccCCCCC
Q 002513 191 TGGQICHQCRRND---RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (914)
Q Consensus 191 ~~g~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~CR 243 (914)
.+...|.-|.++. .+....|..|+ ..+|..|-.. ...+..|.|-+|.
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~-----~~~~~~WlC~vC~ 101 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY-----SKKEPIWLCKVCQ 101 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE-----TSSSCCEEEHHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc-----CCCCCCEEChhhH
Confidence 3567999999875 24578999999 8899999775 2245568877664
No 119
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=21.78 E-value=60 Score=29.67 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=27.8
Q ss_pred hCccceeEeeecCCeEEecCCCcccccccc--ccceecccccCccCHH
Q 002513 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGLDFLFPESVG 867 (914)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~ 867 (914)
+.|..=++.=..||++|||+|-+|...--. .+....+.| +|+-+.
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~ 82 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLE 82 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHH
Confidence 445556677789999999999999988777 677777766 554444
No 120
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=21.60 E-value=27 Score=35.87 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=49.5
Q ss_pred eecc-CCChHHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHHHHHHHHHHhCcccee-EeeecCCeEEecCCCc
Q 002513 767 DVFR-RQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWS-FEQHLGEAVFIPAGCP 844 (914)
Q Consensus 767 DIFr-reDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~hk~rLkeEyGVepWt-f~Q~lGEAVFIPAGCP 844 (914)
||.. +.+.|.+.+.|.+...|..|... -+-=|.+++-|.+-+.. =.-|. +.=..||-+.||||.+
T Consensus 66 dv~~~~~~~p~~~~~~~~f~~EH~H~de-----EvR~i~~G~g~Fdvr~~--------~~~wiri~~e~GDli~vP~g~~ 132 (157)
T PF03079_consen 66 DVVSLHPDHPNYEAKLKKFFEEHTHEDE-----EVRYIVDGSGYFDVRDG--------DDVWIRILCEKGDLIVVPAGTY 132 (157)
T ss_dssp EEEESTTTSTCHHHHHHHHCS-EEESS------EEEEEEECEEEEEEE-T--------TCEEEEEEEETTCEEEE-TT--
T ss_pred EEEecCCCCcchhHHhhhhheeEecChh-----eEEEEeCcEEEEEEEcC--------CCEEEEEEEcCCCEEecCCCCc
Confidence 4444 46667777777766677677642 22345577777665532 25687 6666799999999999
Q ss_pred ccc-ccccccceecccccCc
Q 002513 845 FQV-RNLQSTVQLGLDFLFP 863 (914)
Q Consensus 845 HQV-RNLkSCIKVAlDFVSP 863 (914)
|-. -.=...||+--=|-.+
T Consensus 133 HrF~~~~~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 133 HRFTLGESPYIKAIRLFKDE 152 (157)
T ss_dssp EEEEESTTSSEEEEEEESSC
T ss_pred eeEEcCCCCcEEEEEeecCC
Confidence 986 3334466665555444
No 121
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=21.15 E-value=53 Score=36.05 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=49.3
Q ss_pred eeeeeccCCChHHHHHHHHHHHhhcCCCCCCCCCccCCCCcCCceeeCHHHHHHHHHHhCccceeEeeecCCeEEecCCC
Q 002513 764 AHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 843 (914)
Q Consensus 764 AlWDIFrreDv~KLreyL~kh~~Ef~~~~~~p~~~v~dPIHDQ~fYLt~~hk~rLkeEyGVepWtf~Q~lGEAVFIPAGC 843 (914)
.+-|+|-.+|-+.|---+. +..+. ++..+--|||.+|+-.-.- ++-|.+=++.=..||.+|||.|.
T Consensus 144 ~~~d~~~~~d~s~m~aGf~----~~~~~-----sf~wtl~~dEi~YVLEGe~-----~l~IdG~t~~l~pGDvlfIPkGs 209 (233)
T PRK15457 144 GLTDLVTGDDGSSMAAGFM----QWENA-----FFPWTLNYDEIDMVLEGEL-----HVRHEGETMIAKAGDVMFIPKGS 209 (233)
T ss_pred EeeeeeccCCCCceeeEEE----EEecC-----ccceeccceEEEEEEEeEE-----EEEECCEEEEeCCCcEEEECCCC
Confidence 4556666666666544331 11221 2346777889888755433 36788899999999999999999
Q ss_pred ccccccc
Q 002513 844 PFQVRNL 850 (914)
Q Consensus 844 PHQVRNL 850 (914)
+|.-.+-
T Consensus 210 ~~hf~tp 216 (233)
T PRK15457 210 SIEFGTP 216 (233)
T ss_pred eEEecCC
Confidence 9876443
No 122
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=20.98 E-value=70 Score=34.29 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=24.7
Q ss_pred hCccceeEeeecCCeEEecCCCccccccccc
Q 002513 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 5566667777799999999999999875443
No 123
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.81 E-value=71 Score=32.96 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=15.9
Q ss_pred ccceeEeeecCCeEEecCCCc
Q 002513 824 VEPWSFEQHLGEAVFIPAGCP 844 (914)
Q Consensus 824 VepWtf~Q~lGEAVFIPAGCP 844 (914)
+++=++.=+.||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 568899999999999999963
No 124
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.46 E-value=50 Score=35.13 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.7
Q ss_pred hCccceeEeeecCCeEEecCCCccccccccc
Q 002513 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (914)
Q Consensus 822 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (914)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 4444445556789999999999998877665
Done!