Query 002513
Match_columns 914
No_of_seqs 267 out of 344
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 15:46:42 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002513.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_pdb/002513hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 1.0 1 1 1026.9 13.2 354 485-913 21-377 (392)
2 4gjz_A Lysine-specific demethy 1.0 1 1 97.5 6.5 136 487-665 10-152 (235)
3 3k2o_A Bifunctional arginine d 1.0 1 1 94.8 14.5 246 485-877 54-306 (336)
4 3kv5_D JMJC domain-containing 1.0 1 1 94.7 14.0 263 488-911 148-417 (488)
5 2yu1_A JMJC domain-containing 1.0 1 1 92.9 15.2 270 490-908 65-344 (451)
6 3d8c_A Hypoxia-inducible facto 1.0 1 1 89.1 2.4 41 823-863 257-298 (349)
7 3kv9_A JMJC domain-containing 1.0 1 1 87.5 11.2 262 488-910 57-325 (397)
8 3kv4_A PHD finger protein 8; e 1.0 1 1 87.5 14.2 265 488-909 113-380 (447)
9 3al5_A HTYW5, JMJC domain-cont 1.0 1 1 86.9 8.2 225 486-866 37-279 (338)
10 3pua_A GRC5, PHD finger protei 1.0 1 1 84.8 13.9 257 488-909 56-323 (392)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=1026.90 Aligned_cols=354 Identities=28% Similarity=0.469 Sum_probs=311.3
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCCCC
Q ss_conf 00088899976239987995244568888876133345776311001123347248982699934732133332123788
Q 002513 485 SEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEG 564 (914)
Q Consensus 485 ~~~l~hFQ~hW~kGePVIV~~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~~g 564 (914)
.+|+.|||+||++|||||||||++++++++|+|++|||+|++ + .+++|||++|++++|++++||+||+++
T Consensus 21 ~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd--------~--~~~lidC~~~~~~~i~v~~Ff~Gf~~~ 90 (392)
T 2ypd_A 21 SSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD--------H--QADLLNCKDSIISNANVKEFWDGFEEV 90 (392)
T ss_dssp TTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT--------S--CCCCEETTTCCBCSCCHHHHHHTSSBG
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCHHHHHHHHCC--------C--EEEEEECCCCCCCCCCHHHHHHHCCCC
T ss_conf 644799999983799689962223376784278999887167--------4--111443799841157689986542464
Q ss_pred CCC---CCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 324---89985103206999941028885115168873799512257898510110039998899998862000245521
Q 002513 565 RVR---EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYE 641 (914)
Q Consensus 565 r~~---~~gwp~mLKLKDWPps~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~e 641 (914)
+.+ ++|||+|||||||||+++|+++||+||+|||++|||||||||+ |+||||++||+++++||||||||||||+++
T Consensus 91 ~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~~ 169 (392)
T 2ypd_A 91 SKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVA 169 (392)
T ss_dssp GGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEECCSTT
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC-CCCHHHHHCCCCCCCCCCCCCHHHHCCCCH
T ss_conf 4577677898015664689975778887377789999709966750897-410499868787777887750014218612
Q ss_pred CCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23589983111101210433544235456898214674201100001235799976679999898768998888510013
Q 002513 642 ELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEK 721 (914)
Q Consensus 642 elG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 721 (914)
++|+++|||||||||||||||||||++++..... ...+.++ +..+++ +
T Consensus 170 ~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~~-~~~~~l~-~~~~~~-------------~----------------- 217 (392)
T 2ypd_A 170 AKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGIL-SKAGILK-KFEEED-------------L----------------- 217 (392)
T ss_dssp TTCTTCCSEEEEECSSEEEEEEEEEECCBCTTCC-CHHHHHH-HHHTSC-------------C-----------------
T ss_pred HCCCCCCCCEEEEEHHHHHHHHHEECCCCCCCCC-HHHHHHH-HHHHCC-------------C-----------------
T ss_conf 1056777340000256555554012024765420-1356654-311202-------------2-----------------
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 45651023111587656510000000113688899889999601143058996799999999885408899998886579
Q 002513 722 SATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTH 801 (914)
Q Consensus 722 ~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~d 801 (914)
+... +.++. +..+.+||+||||||||++|||+||++|++||+.. +.+++|
T Consensus 218 ------d~~~---------------~~r~~-----~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~----~~~~~d 267 (392)
T 2ypd_A 218 ------DDIL---------------RKRLK-----DSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLE----VLPEHD 267 (392)
T ss_dssp ------CHHH---------------HHHHT-----CTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC----------CC
T ss_pred ------CHHH---------------HHHCC-----CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC----CCCCCC
T ss_conf ------0777---------------65315-----78999984565457766999999999998864987----667778
Q ss_pred CCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 87677412099889999988496211686405876885689941114653321000133586678999999999722995
Q 002513 802 PLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN 881 (914)
Q Consensus 802 PIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~ 881 (914)
|||||+||||.+||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||++|++||+|||+||
T Consensus 268 Pihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~- 346 (392)
T 2ypd_A 268 PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLK- 346 (392)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC-----
T ss_pred CCCCCCEEECHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCC-
T ss_conf 6768887866999999987519704899973787799669978887520221457652268421999999789986251-
Q ss_pred CCCCCCCCCCHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 33233230100102366651003544321016
Q 002513 882 DHEAKLQVLEVRQRKLFQEVFSPLLSLKLLCS 913 (914)
Q Consensus 882 ~H~akeDkLeVkkm~lya~~~~~~~~lk~~~~ 913 (914)
+|++||||||||||++||+ +++|..|+.+++
T Consensus 347 ~~~~~edkLqvk~m~~~av-~~av~~l~~~~~ 377 (392)
T 2ypd_A 347 EEINYDDKLQVKNILYHAV-KEMVRALKIHED 377 (392)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 1003688999999999999-999999886377
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=1.00 E-value=1 Score=97.48 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=72.4
Q ss_pred CHHHH-HHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC-----CCCEEECCHHHHHC
Q ss_conf 08889-997623998799524456888-887613334577631100112334724898269-----99347321333321
Q 002513 487 GIGNF-RKHWVKGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCL-----DWSEVDIELGEFIK 559 (914)
Q Consensus 487 ~l~hF-Q~hW~kGePVIV~~Vl~~~s~-lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCl-----d~~ev~i~i~~Ff~ 559 (914)
..+.| +++|.+++|||++|+.+.-.. ..|.++++-..++ +. .|.+-.+. ++....+.+.+|..
T Consensus 10 S~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g--------~~--~v~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (235)
T 4gjz_A 10 SLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAG--------CR--TVPVEVGSRYTDEEWSQTLMTVNEFIS 79 (235)
T ss_dssp CHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHT--------TS--EEEEEEC-------CEEEEEEHHHHHH
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHCC--------CC--EEEEEECCCCCCCCCCEEECCHHHHHH
T ss_conf 99999998742798689928876883112279999998739--------97--687872576557765356556999999
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 23788324899851032069999410288851151688737995122578985101100399988999988620002455
Q 002513 560 GYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGT 639 (914)
Q Consensus 560 Gy~~gr~~~~gwp~mLKLKDWPps~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~ 639 (914)
.+...... ..+-+.++. +.....++..-+.+|.|.....+.. .+..+-+||
T Consensus 80 ~~~~~~~~-----~~~y~~~~~--------~~~~~~~l~~d~~~p~~~~~~~~~~------------~~~~~~~wi---- 130 (235)
T 4gjz_A 80 KYIVNEPR-----DVGYLAQHQ--------LFDQIPELKQDISIPDYCSLGDGEE------------EEITINAWF---- 130 (235)
T ss_dssp HHTSSCCS-----SCEEEEEEC--------HHHHCHHHHTTCCCCGGGGGSSSCG------------GGCEEEEEE----
T ss_pred HHHHCCCC-----CCCEEEHHH--------HHHHHHHHHHHHCCCCCCCCCCCCC------------CCCCEEEEE----
T ss_conf 98626776-----653110223--------5441188887543785112455555------------766437998----
Q ss_pred CCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 21235899831111012104335442
Q 002513 640 YEELDRGNSVKNLHFNMPDMVYLLVH 665 (914)
Q Consensus 640 ~eelG~GdSvTkLH~DmSDAVNIL~h 665 (914)
|.+.++|.||.|..+..+++++
T Consensus 131 ----G~~gs~t~~H~D~~~n~~~qv~ 152 (235)
T 4gjz_A 131 ----GPQGTISPLHQDPQQNFLVQVM 152 (235)
T ss_dssp ----ECTTCEEEEECCSSEEEEEEEE
T ss_pred ----ECCCCCCEEEECCCCCEEEEEE
T ss_conf ----4799774362156656699995
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=1.00 E-value=1 Score=94.83 Aligned_cols=246 Identities=16% Similarity=0.181 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHH-CCCCEEEECCCCCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCC
Q ss_conf 000888999762-3998799524456888-88761333457763110011233472489826999347321333321237
Q 002513 485 SEGIGNFRKHWV-KGEPVIVKQVCDSSSM-SIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (914)
Q Consensus 485 ~~~l~hFQ~hW~-kGePVIV~~Vl~~~s~-lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~ 562 (914)
.-....|.+.+. .+.|||++|+.+.-.. ..|.+.++-..+ ++. .|.+-.--++..+.+.+++|+.-+.
T Consensus 54 ~lS~eeF~~~y~~~~~PvVi~g~~~~WpA~~~Wt~~yL~~~~--------G~~--~V~v~~~~~~~~~~m~~~~fl~~~~ 123 (336)
T 3k2o_A 54 QLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKY--------RNQ--KFKCGEDNDGYSVKMKMKYYIEYME 123 (336)
T ss_dssp GCCHHHHHHHTTTTTCCEEEESTTTTCTHHHHCSHHHHHHHS--------TTC--EEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH--------CCC--EEEEEECCCCCEEEECHHHHHHHHH
T ss_conf 999999999843669888984886788467662599999981--------992--4899863787434421999999997
Q ss_pred CCCCCCCCCCCEEEECCCCCCCHHHH--HHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 88324899851032069999410288--8511516887379951225789851011003999889999886200024552
Q 002513 563 EGRVREDGWPEMLKLKDWPSPSASEE--FLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTY 640 (914)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~F~e--~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ 640 (914)
... ...| |=|.||. |.+ .+|. +..-..+|+|.. ...++++ +. ...|| -+++=.
T Consensus 124 ~~~---~~~~--lYL~d~~----~~e~~~~p~----L~~dy~~P~~f~--~d~~~~~---~~-~~~p~---~~~~~~--- 178 (336)
T 3k2o_A 124 STR---DDSP--LYIFDSS----YGEHPKRRK----LLEDYKVPKFFT--DDLFQYA---GE-KRRPP---YRWFVM--- 178 (336)
T ss_dssp HCC---CSSC--CCEEESC----GGGSTTGGG----GGGGCCCCGGGC--CCGGGGG---CT-TTSCC---CEEEEE---
T ss_pred HCC---CCCC--CEEECCC----CCCCCCCHH----HHHHCCCCCCCC--CCHHHHC---CC-CCCCC---CEEEEE---
T ss_conf 047---7787--1575154----443212355----797657884433--1055426---53-34877---207997---
Q ss_pred CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12358998311110121043354423545689821467420110000123579997667999989876899888851001
Q 002513 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (914)
Q Consensus 641 eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 720 (914)
|.+.|.|.||.|....-|+++.+..
T Consensus 179 ---G~~gs~t~~H~D~~~~~~~~~~v~G---------------------------------------------------- 203 (336)
T 3k2o_A 179 ---GPPRSGTGIHIDPLGTSAWNALVQG---------------------------------------------------- 203 (336)
T ss_dssp ---ECTTCEEEEECCGGGCEEEEEEEES----------------------------------------------------
T ss_pred ---CCCCCCCCCCCCCCCCCEEEEEEEE----------------------------------------------------
T ss_conf ---7887667744488766414699741----------------------------------------------------
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34565102311158765651000000011368889988999960114305899679999999988540889999888657
Q 002513 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (914)
Q Consensus 721 ~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (914)
-=.|-+|.+.+.+.|-. +....+... . ....
T Consensus 204 ------------------------------------------~K~~~L~pP~~~~~ly~----~~~~~~~~~--~-~~~~ 234 (336)
T 3k2o_A 204 ------------------------------------------HKRWCLFPTSTPRELIK----VTRDEGGNQ--Q-DEAI 234 (336)
T ss_dssp ------------------------------------------CEEEEEECTTSCHHHHC----CCHHHHGGG--T-TCHH
T ss_pred ------------------------------------------EEEEEEECCCCCHHCCC----CCCCCCCCC--C-CCHH
T ss_conf ------------------------------------------07999958985231056----760015877--5-3114
Q ss_pred CCCCCCCEEECHHHHHHHH-HHH--CCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9876774120998899999-884--9621168640587688568994111465332100013358667899999999972
Q 002513 801 HPLYGEVVYLNGDHKRKLK-EEF--GVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIR 877 (914)
Q Consensus 801 dPIHDQ~fYLt~~hk~kLk-EEy--GVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR 877 (914)
+ |+++..- ++. ++| ...++.++|.+||++|||+|-.|||+|+..||.|...|+++.|+...+++|-+-|
T Consensus 235 ~------w~~~~~P--~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~~~ 306 (336)
T 3k2o_A 235 T------WFNVIYP--RTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGR 306 (336)
T ss_dssp H------HHHHTGG--GGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHHHC
T ss_pred H------HHHHHCC--CHHHHCCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 5------5543383--0121023345750799988998898589971777638986999754278201999999987408
No 4
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=94.74 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=153.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCC
Q ss_conf 888999762399879952445688888-----761333457763110011233472489826999347321333321237
Q 002513 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (914)
Q Consensus 488 l~hFQ~hW~kGePVIV~~Vl~~~s~ls-----W~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~ 562 (914)
...|++++ -..||||.+.-. .|+- |+-..+-.- + ..+..|.++||.....+++++++|.+=|.
T Consensus 148 ~~~~~~~~-~~~Pvli~~~~~--lg~~~P~~~~t~~~v~~~--------~-G~d~~V~V~Dv~~Q~~~~m~l~~yi~y~~ 215 (488)
T 3kv5_D 148 QRYLEKHG-FDVPIMVPKLDD--LGLRLPSPTFSVMDVERY--------V-GGDKVIDVIDVARQADSKMTLHNYVKYFM 215 (488)
T ss_dssp HHHHHHHC-SCSCEEECSCTT--TCCBCCCTTCCHHHHHHH--------H-CTTCEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHCC-CCCCEEEECCCC--CCCCCCCCCCCHHHHHHH--------H-CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99997537-887779835777--677689887869999997--------2-89945643533766461655999999984
Q ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCHHHCCCCC
Q ss_conf 8832489985103206999941028885115168873799512257898510110039998--89999886200024552
Q 002513 563 EGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTY 640 (914)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~ 640 (914)
.. .+. ..|-+-|+--+.. .+......|+|.. ....+|. ..|.. .-+|++. .|+-
T Consensus 216 ~~-~r~----~~~nv~slefs~~----------~L~~~~~~P~~~~-~~d~~~~--~wp~~~~~~rP~~~--r~~~---- 271 (488)
T 3kv5_D 216 NP-NRP----KVLNVISLEFSDT----------KMSELVEVPDIAK-KLSWVEN--YWPDDSVFPKPFVQ--KYCL---- 271 (488)
T ss_dssp SS-SCS----SCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCTTCSSCCCCCS--CEEE----
T ss_pred CC-CCC----CCCCCCCCCCCCC----------HHHCCCCCCHHHH-HHCHHHH--CCCCCCCCCCCCCC--EEEE----
T ss_conf 23-876----6301364200652----------2320577970352-2033441--27631134675510--3899----
Q ss_pred CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12358998311110121043354423545689821467420110000123579997667999989876899888851001
Q 002513 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (914)
Q Consensus 641 eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 720 (914)
.|...|.|.||.|....- +..++
T Consensus 272 --mG~~gS~T~~H~D~~~t~-~w~~v------------------------------------------------------ 294 (488)
T 3kv5_D 272 --MGVQDSYTDFHIDFGGTS-VWYHV------------------------------------------------------ 294 (488)
T ss_dssp --EECTTCEEEEECCGGGCE-EEEEE------------------------------------------------------
T ss_pred --ECCCCCCCCEEECCCCCC-EEEEC------------------------------------------------------
T ss_conf --828998898678899982-65541------------------------------------------------------
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34565102311158765651000000011368889988999960114305899679999999988540889999888657
Q 002513 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (914)
Q Consensus 721 ~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (914)
-.|-=.|-+|++.+.+ +.-| +.+. . .
T Consensus 295 ---------------------------------------v~G~K~w~L~PPt~~~-~~~y--~~~~---~---------~ 320 (488)
T 3kv5_D 295 ---------------------------------------LWGEKIFYLIKPTDEN-LARY--ESWS---S---------S 320 (488)
T ss_dssp ---------------------------------------EEEEEEEEEECCCHHH-HHHH--HHHH---T---------C
T ss_pred ---------------------------------------CCEEEEEEEECCCCCC-CCCC--CCCC---C---------C
T ss_conf ---------------------------------------6705899996986246-3435--5445---5---------7
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98767741209988999998849621168640587688568994111465332100013358667899999999972299
Q 002513 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (914)
Q Consensus 801 dPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp 880 (914)
.+. ...||-+ ...+++.++|.+||++|||+|..|||.||..||-|.-.|++..|+...++..+==+.+.
T Consensus 321 ~~~-~~~~~~~----------~~~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~ 389 (488)
T 3kv5_D 321 VTQ-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLK 389 (488)
T ss_dssp SSG-GGSCGGG----------SSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTT
T ss_pred CCC-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 762-1334311----------35533898617887787679964886278884897665377567999999999998508
Q ss_pred CCCCCCCCCCCHHCHHHHHHHHHHHHHHHHH
Q ss_conf 5332332301001023666510035443210
Q 002513 881 NDHEAKLQVLEVRQRKLFQEVFSPLLSLKLL 911 (914)
Q Consensus 881 ~~H~akeDkLeVkkm~lya~~~~~~~~lk~~ 911 (914)
.. .+-.-..-..|++|.+.+ .+..|+.+
T Consensus 390 ~~--~~~~~p~f~~~~w~~~~~-~l~~~~~~ 417 (488)
T 3kv5_D 390 TP--DLFKFPFFEAICWFVAKN-LLETLKEL 417 (488)
T ss_dssp CC--TTSSCTTHHHHHHHHHHH-HHHHHHHH
T ss_pred CC--CCCCCCCHHHHHHHHHHH-HHHHHHHH
T ss_conf 86--336473689999999999-99999998
No 5
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=1.00 E-value=1 Score=92.87 Aligned_cols=270 Identities=11% Similarity=0.078 Sum_probs=146.6
Q ss_pred HHHHHHHCCCCEEEECCCCCCC----CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCCCCC
Q ss_conf 8999762399879952445688----888761333457763110011233472489826999347321333321237883
Q 002513 490 NFRKHWVKGEPVIVKQVCDSSS----MSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGR 565 (914)
Q Consensus 490 hFQ~hW~kGePVIV~~Vl~~~s----~lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~~gr 565 (914)
.|.+.=....|||++++ +... ...|+..++-. ++|+ ...|.++||.+..-+++++++|.+-+....
T Consensus 65 EF~~~~~~nkPVVIt~~-~~Wpa~~P~~kWt~dyL~~--------~~G~-d~~V~V~D~~~q~~~~M~l~eyidy~~~~~ 134 (451)
T 2yu1_A 65 EYIQRGGLRDPLIFKNS-DGLGIKMPDPDFTVNDVKM--------CVGS-RRMVDVMDVNTQKGIEMTMAQWTRYYETPE 134 (451)
T ss_dssp HHHHHHCSCSCEEESSC-TTTTCBCCCTTCCHHHHHH--------HTCT-TCCCCCEETTSSCCTTCCHHHHHHHHTSCT
T ss_pred HHHHHCCCCCCEEECCC-CCCCCCCCCCCCCHHHHHH--------HCCC-CCEEEEEECCCCCCEEEEHHHHHHHHHHCC
T ss_conf 99985389975898157-6788727767899999999--------7399-716755774778544535999999985141
Q ss_pred CCCCCCCCEEEECCCCCCCHHHH---HHHHCHHHH--HHCCCCCCCCCCCC-CCCHHCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 24899851032069999410288---851151688--73799512257898-5101100399988999988620002455
Q 002513 566 VREDGWPEMLKLKDWPSPSASEE---FLLYHKPEF--ISKLPLLEYIHSRL-GFLNVAAKLPHYSLQNDVGPKIYMSYGT 639 (914)
Q Consensus 566 ~~~~gwp~mLKLKDWPps~~F~e---~lP~h~~ef--i~aLP~~EYt~pr~-G~LNLAskLP~~~lkPDLGPK~YIAYG~ 639 (914)
... .+ ++-+..|.=+..|-+ ..|....++ +.. .|+++...+. -.+|... ..-.||.. .|+-
T Consensus 135 d~r--~~-LY~v~sLeF~~~~l~~~~~~P~l~~d~Dwv~~-~~p~~l~~~~~d~f~~lg----e~~rP~~~--r~~~--- 201 (451)
T 2yu1_A 135 EER--EK-LYNVISLEFSHTRLENMVQRPSTVDFIDWVDN-MWPRHLKESQTESTNAIL----EMQYPKVQ--KYCL--- 201 (451)
T ss_dssp TTC--CS-CEEEEEECCTTSTTGGGCBCCHHHHHHCHHHH-HSCGGGCC---------------CCSCCCC--CEEE---
T ss_pred CCC--CC-HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCHHHHHHHHHHHHHCC----CCCCCCHH--EEEE---
T ss_conf 345--30-00001101366400102467346654310210-274033210124543025----44588610--1799---
Q ss_pred CCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21235899831111012104335442354568982146742011000012357999766799998987689988885100
Q 002513 640 YEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHV 719 (914)
Q Consensus 640 ~eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 719 (914)
.|...|.|.+|.|....-+....+
T Consensus 202 ---mGp~gS~T~~H~D~~~ts~w~avi----------------------------------------------------- 225 (451)
T 2yu1_A 202 ---MSVRGCYTDFHVDFGGTSVWYHIH----------------------------------------------------- 225 (451)
T ss_dssp ---EECTTCEEEEECCGGGCEEEEEEE-----------------------------------------------------
T ss_pred ---ECCCCCCCCEEECCCCCCHHHHEE-----------------------------------------------------
T ss_conf ---805888799688999840423100-----------------------------------------------------
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 13456510231115876565100000001136888998899996011430589967999999998854088999988865
Q 002513 720 EKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFV 799 (914)
Q Consensus 720 ~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v 799 (914)
.|-=.|=+|++.+.+ +.-|- .+.- . + .
T Consensus 226 -----------------------------------------~GrK~w~L~PP~~~~-~~~y~--~~~~---s---~-~-- 252 (451)
T 2yu1_A 226 -----------------------------------------QGGKVFWLIPPTAHN-LELYE--NWLL---S---G-S-- 252 (451)
T ss_dssp -----------------------------------------ESCEEEEEECCCHHH-HHHHH--HHHH---T---T-C--
T ss_pred -----------------------------------------CCEEEEEEECCCCCC-CCCCC--CCCC---C---C-C--
T ss_conf -----------------------------------------443899996997655-33234--4444---6---5-4--
Q ss_pred CCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 79876774120998899999884962116864058768856899411146533210001335866789999999997229
Q 002513 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCL 879 (914)
Q Consensus 800 ~dPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~L 879 (914)
.+..| +.++..+++.+++..||++|||+|.-|||.||..||-|...|++.-|+...++.++-=+++
T Consensus 253 ----q~~~~----------~p~~~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~ 318 (451)
T 2yu1_A 253 ----QGDIF----------LGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRT 318 (451)
T ss_dssp ----CSSSC----------HHHHSSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred ----CHHHH----------HCCCCCCCEEEEECCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf ----01545----------0001355469998887279867996489961787289964408852589999999998863
Q ss_pred CCCCCCCCCCCCHHCHHHHHHHHHHHHHH
Q ss_conf 95332332301001023666510035443
Q 002513 880 PNDHEAKLQVLEVRQRKLFQEVFSPLLSL 908 (914)
Q Consensus 880 p~~H~akeDkLeVkkm~lya~~~~~~~~l 908 (914)
.... +-.----..|++|++.. .+..|
T Consensus 319 ~v~~--~~~~p~f~~~~w~~~~~-~~~~~ 344 (451)
T 2yu1_A 319 RVPN--KFRYPFYYEMCWYVLER-YVYCI 344 (451)
T ss_dssp TCCT--TSSCTTHHHHHHHHHHH-HHHHH
T ss_pred CCCC--CCCCCCHHHHHHHHHHH-HHHHH
T ss_conf 7984--45382389999999999-99997
No 6
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=1.00 E-value=1 Score=89.11 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=36.6
Q ss_pred CCCCEEEEEECCCEEEECCCCCCCCCCCC-CCCEECCCCCCC
Q ss_conf 96211686405876885689941114653-321000133586
Q 002513 823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQ-STVQLGLDFLFP 863 (914)
Q Consensus 823 GVepWtf~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSP 863 (914)
.+.++.+++.+||++|||+|-.|||+|+- .++.|++-|..+
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~~ 298 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYK 298 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEECCCCCEEEEECCCCCCEEEEEEECC
T ss_conf 687189999998789988998088898688984899998808
No 7
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=1.00 E-value=1 Score=87.54 Aligned_cols=262 Identities=18% Similarity=0.259 Sum_probs=148.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCC
Q ss_conf 888999762399879952445688888-----761333457763110011233472489826999347321333321237
Q 002513 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (914)
Q Consensus 488 l~hFQ~hW~kGePVIV~~Vl~~~s~ls-----W~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~ 562 (914)
...|+.++ -..||||.+.-. .|.- |+-..+-. . + ..+..|.++||.+...+++++++|.+=|.
T Consensus 57 ~~y~~~~~-~~~Pvli~~~~g--lg~~~P~~~~tv~~v~~----~----v-G~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~ 124 (397)
T 3kv9_A 57 QRYLEKHG-FDVPIMVPKLDD--LGLRLPSPTFSVMDVER----Y----V-GGDKVIDVIDVARQADSKMTLHNYVKYFM 124 (397)
T ss_dssp HHHHHHHC-SCSCEEESSCTT--SCCBCCCTTCCHHHHHH----H----H-TTTSEEEEEETTTTEEEEEEHHHHHHHHH
T ss_pred HHHHHHCC-CCCCEEEECCCC--CCCCCCCCCCCHHHHHH----H----H-CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99997548-987679816754--56758988888999999----8----2-88846741114766574542999999972
Q ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC--CCCCCCCHHHCCCCC
Q ss_conf 883248998510320699994102888511516887379951225789851011003999889--999886200024552
Q 002513 563 EGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSL--QNDVGPKIYMSYGTY 640 (914)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~l--kPDLGPK~YIAYG~~ 640 (914)
... + ...|-+-||--+.. .+-...-.|+|.. ..-.+|. ..|.... +|+. +.|+-.|
T Consensus 125 ~~~-r----~~~lnvislefs~~----------~L~~~~~~P~~v~-d~Dwv~~--~wp~~~~~~rP~v--~r~l~mG-- 182 (397)
T 3kv9_A 125 NPN-R----PKVLNVISLEFSDT----------KMSELVEVPDIAK-KLSWVEN--YWPDDSVFPKPFV--QKYCLMG-- 182 (397)
T ss_dssp CSS-C----SSCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCTTCSSCCCCC--SCEEEEE--
T ss_pred CCC-C----CCCCEECCHHHCCC----------HHCCCCCCCCEEE-CCCHHHH--CCCCHHCCCCCCC--EEEEEEC--
T ss_conf 048-8----75020054622551----------1035767971320-0116550--2871112578661--2599981--
Q ss_pred CCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12358998311110121043354423545689821467420110000123579997667999989876899888851001
Q 002513 641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE 720 (914)
Q Consensus 641 eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 720 (914)
...|.|.+|.|....- +..++
T Consensus 183 ----p~gS~T~~HiD~~gts-~w~~v------------------------------------------------------ 203 (397)
T 3kv9_A 183 ----VQDSYTDFHIDFGGTS-VWYHV------------------------------------------------------ 203 (397)
T ss_dssp ----CTTCEEEEECCGGGCE-EEEEE------------------------------------------------------
T ss_pred ----CCCCCCCEEECCCCCC-EEEEE------------------------------------------------------
T ss_conf ----8998898778899986-02451------------------------------------------------------
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 34565102311158765651000000011368889988999960114305899679999999988540889999888657
Q 002513 721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT 800 (914)
Q Consensus 721 ~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~ 800 (914)
-.|-=.|=+|++.+.+ +.-| +.+.. .
T Consensus 204 ---------------------------------------v~GrK~w~L~PPt~~n-l~ly--~~~~~-------s----- 229 (397)
T 3kv9_A 204 ---------------------------------------LWGEKIFYLIKPTDEN-LARY--ESWSS-------S----- 229 (397)
T ss_dssp ---------------------------------------EEEEEEEEEECCCHHH-HHHH--HHHHT-------S-----
T ss_pred ---------------------------------------CCCEEEEEEECCCCCC-CCCC--CCCCC-------C-----
T ss_conf ---------------------------------------4705999996976134-1100--00255-------7-----
Q ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98767741209988999998849621168640587688568994111465332100013358667899999999972299
Q 002513 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 880 (914)
Q Consensus 801 dPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp 880 (914)
.+. ...||-+ ...+++.++|.+||++|||+|..|+|.|+..+|-|...|+++.|+...++..+-=+.+.
T Consensus 230 ~~~-~e~~~~~----------~~~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k 298 (397)
T 3kv9_A 230 VTQ-SEVFFGD----------KVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLK 298 (397)
T ss_dssp GGG-GGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHT
T ss_pred CCC-CHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 772-0434124----------45743999978988899679984770288685897871357010899999998997618
Q ss_pred CCCCCCCCCCCHHCHHHHHHHHHHHHHHHH
Q ss_conf 533233230100102366651003544321
Q 002513 881 NDHEAKLQVLEVRQRKLFQEVFSPLLSLKL 910 (914)
Q Consensus 881 ~~H~akeDkLeVkkm~lya~~~~~~~~lk~ 910 (914)
. ..+-+-..-..|++|.+.+ .+..|+.
T Consensus 299 ~--~~~~~fp~F~~~~w~~a~~-~l~~~~~ 325 (397)
T 3kv9_A 299 T--PDLFKFPFFEAICWFVAKN-LLETLKE 325 (397)
T ss_dssp C--GGGGGSTTHHHHHHHHHHH-HHHHHHH
T ss_pred C--CCCCCCCCHHHHHHHHHHH-HHHHHHH
T ss_conf 8--8557670689999999999-9999998
No 8
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=87.50 Aligned_cols=265 Identities=14% Similarity=0.224 Sum_probs=149.1
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHH-HHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCCCCCC
Q ss_conf 888999762399879952445688888761333-4577631100112334724898269993473213333212378832
Q 002513 488 IGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDI-WRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRV 566 (914)
Q Consensus 488 l~hFQ~hW~kGePVIV~~Vl~~~s~lsW~P~~m-wr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~~gr~ 566 (914)
...|+.+ +-+.||||.+.- ..|+-|-+..+ +..+.+.. ..+..|.+||+.+...+++++++|.+=|....
T Consensus 113 ~~~~~~~-~~~~Pvli~~~~--glgm~~P~~~~tv~~v~~~~-----G~d~~V~ViDv~~Q~~~~M~l~~y~dy~~~~~- 183 (447)
T 3kv4_A 113 VEFLEEN-SFSVPILVLKKD--GLGMTLPSPSFTVRDVEHYV-----GSDKEIDVIDVTRQADCKMKLGDFVKYYYSGK- 183 (447)
T ss_dssp HHHHHHT-TSCSCEEESSCT--TSCCBCCCTTCCHHHHHHHH-----CTTCEEEEEETTTTEEEEEEHHHHHHHHHSSC-
T ss_pred HHHHHHC-CCCCCEEEECCC--CCCCCCCCCCCCHHHHHHHC-----CCCCEECCEECCCCCCCCCCHHHHHHHHHCCC-
T ss_conf 9999864-799777981576--55775898658899999874-----99846744554767662053999999971368-
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCHHHCCCCCCCCC
Q ss_conf 489985103206999941028885115168873799512257898510110039998--899998862000245521235
Q 002513 567 REDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHY--SLQNDVGPKIYMSYGTYEELD 644 (914)
Q Consensus 567 ~~~gwp~mLKLKDWPps~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~--~lkPDLGPK~YIAYG~~eelG 644 (914)
+ ...|=|.||--+.. .+....-+|+|.. ..-.+|. ..|.. .-+||. ..|.- .|
T Consensus 184 r----~~~lnv~d~efs~~----------~L~~~~~~P~~~~-~~D~~~~--lw~~~~~~~rP~v--~r~~~------mG 238 (447)
T 3kv4_A 184 R----EKVLNVISLEFSDT----------RLSNLVETPKIVR-KLSWVEN--LWPEECVFERPNV--QKYCL------MS 238 (447)
T ss_dssp C----SSCEEEEEEECTTS----------GGGGGCBCCHHHH-HHCHHHH--HCCSCTTSCCCCC--SCEEE------EE
T ss_pred C----CCCEEECCCCCCCC----------HHHHCCCCCCEEC-CCCHHHH--CCCCHHHCCCCCC--EEEEE------EE
T ss_conf 7----77544214100552----------2440467884312-0005653--0650121159870--36999------81
Q ss_pred CCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89983111101210433544235456898214674201100001235799976679999898768998888510013456
Q 002513 645 RGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSAT 724 (914)
Q Consensus 645 ~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 724 (914)
...|.|.+|.|.... ++..++
T Consensus 239 ~~gS~T~~HiD~~~t-s~w~~v---------------------------------------------------------- 259 (447)
T 3kv4_A 239 VRDSYTDFHIDFGGT-SVWYHV---------------------------------------------------------- 259 (447)
T ss_dssp CTTEEEEEECCGGGC-EEEEEE----------------------------------------------------------
T ss_pred CCCCCCCEEECCCCC-CEEEEE----------------------------------------------------------
T ss_conf 899889866899998-345898----------------------------------------------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 51023111587656510000000113688899889999601143058996799999999885408899998886579876
Q 002513 725 DEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLY 804 (914)
Q Consensus 725 ~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~dPIH 804 (914)
-.|-=.|=+|++.+.+ |..|-. +. . .+..
T Consensus 260 -----------------------------------i~GrK~w~L~PPt~~n-l~~~~~--~~---~----------s~~~ 288 (447)
T 3kv4_A 260 -----------------------------------LKGEKIFYLIRPTNAN-LTLFEC--WS---S----------SSNQ 288 (447)
T ss_dssp -----------------------------------EESEEEEEEECCCHHH-HHHHHH--HH---T----------CSSG
T ss_pred -----------------------------------EEEEEEEEEECCCCCC-CCCHHH--CC---C----------CCCH
T ss_conf -----------------------------------6017999996987245-442011--13---5----------7530
Q ss_pred CCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 77412099889999988496211686405876885689941114653321000133586678999999999722995332
Q 002513 805 GEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHE 884 (914)
Q Consensus 805 DQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~ 884 (914)
+..||-+ ...+++.++|..||++|||+|..|||.|+..||-|...|++..|+..-++..+-=+.+...
T Consensus 289 ~~~~~~~----------~~~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~~-- 356 (447)
T 3kv4_A 289 NEMFFGD----------QVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTA-- 356 (447)
T ss_dssp GGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTCC--
T ss_pred HHHHCCC----------CCCCEEEEEECCCCEEECCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC--
T ss_conf 2334055----------4564399998898678638997688863788799815434634799999999999860797--
Q ss_pred CCCCCCCHHCHHHHHHHHHHHHHHH
Q ss_conf 3323010010236665100354432
Q 002513 885 AKLQVLEVRQRKLFQEVFSPLLSLK 909 (914)
Q Consensus 885 akeDkLeVkkm~lya~~~~~~~~lk 909 (914)
.|----.-.+|+||++.. .+..|+
T Consensus 357 ~~~~~p~f~~~~w~~~~~-~~~~~~ 380 (447)
T 3kv4_A 357 DLFRFPNFETICWYVGKH-ILDIFR 380 (447)
T ss_dssp GGGSCTTHHHHHHHHHHH-HHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHH
T ss_conf 423266879999999999-999988
No 9
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=1.00 E-value=1 Score=86.92 Aligned_cols=225 Identities=14% Similarity=0.182 Sum_probs=121.0
Q ss_pred CCHHHHHH-HHHCCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC---------CCCCEEECCH
Q ss_conf 00888999-762399879952445688-888761333457763110011233472489826---------9993473213
Q 002513 486 EGIGNFRK-HWVKGEPVIVKQVCDSSS-MSIWDPKDIWRGIRETADEKTKDENRIVKAIDC---------LDWSEVDIEL 554 (914)
Q Consensus 486 ~~l~hFQ~-hW~kGePVIV~~Vl~~~s-~lsW~P~~mwr~~~e~~~~~~~~~~~~vkaiDC---------ld~~ev~i~i 554 (914)
-....|.+ +|.++.|||++| +..-. ...|+++++-..++ +. .|.+-.+ .+|..+.+++
T Consensus 37 lS~~eF~~~y~~~~kPvVi~g-~~~wpa~~~Ws~dyL~~~~g--------~~--~V~v~~~~~~~~~~~~~~~~~~~~~f 105 (338)
T 3al5_A 37 VSREQFMQHLYPQRKPLVLEG-IDLGPCTSKWTVDYLSQVGG--------KK--EVKIHVAAVAQMDFISKNFVYRTLPF 105 (338)
T ss_dssp CCHHHHHHHTGGGCCCEEEES-CCCCTHHHHCCHHHHHHHHC--------SC--EEEEEC----CCCC-CCCCCEEEEEH
T ss_pred CCHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCHHHHHHHHC--------CC--EEEEEECCCCCCCCCCCCCEEEEEEH
T ss_conf 999999998644897199958-98882013489999998619--------92--69999767877663235631687589
Q ss_pred HHHHCCCCCCCCCC--CCCCCEEEECCCCC-----CCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCC
Q ss_conf 33321237883248--99851032069999-----410288851151688737995122578985101100399988999
Q 002513 555 GEFIKGYSEGRVRE--DGWPEMLKLKDWPS-----PSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQN 627 (914)
Q Consensus 555 ~~Ff~Gy~~gr~~~--~gwp~mLKLKDWPp-----s~~F~e~lP~h~~efi~aLP~~EYt~pr~G~LNLAskLP~~~lkP 627 (914)
.+|++-+....... ..-...+=|++|+. ...+.+.+| ++..-+.+|.|..+ +....
T Consensus 106 ~efl~~~~~~~~~~~l~~~~~~~Yl~~~~~~~~~~~~~l~~~~p----~L~~d~~~P~~~~~-d~~~~------------ 168 (338)
T 3al5_A 106 DQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFP----LLKGDIKFPEFFKE-EQFFS------------ 168 (338)
T ss_dssp HHHHHHHHC-CCSSCSSCTTCCCEEECCCSSTTTCCCCHHHHCH----HHHTTCCCCCCSCG-GGEEE------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHCH----HHHHHCCCCCCCCC-CCCCC------------
T ss_conf 99999987424665445777543010035442000131767787----78976578741244-45544------------
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98862000245521235899831111012104335442354568982146742011000012357999766799998987
Q 002513 628 DVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDL 707 (914)
Q Consensus 628 DLGPK~YIAYG~~eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~ 707 (914)
.-+|| |.+.+.|.+|.|..|..++++. ..
T Consensus 169 ---s~l~~--------g~~g~~~~~H~D~~~n~~~qv~--G~-------------------------------------- 197 (338)
T 3al5_A 169 ---SVFRI--------SSPGLQLWTHYDVMDNLLIQVT--GK-------------------------------------- 197 (338)
T ss_dssp ---EEEEE--------ECTTCEEEEECCSSEEEEEECS--SC--------------------------------------
T ss_pred ---CEEEE--------CCCCCCCCCEECCCCCEEEEEE--EE--------------------------------------
T ss_conf ---02687--------7998875665878103899999--77--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 68998888510013456510231115876565100000001136888998899996011430589967999999998854
Q 002513 708 SLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 787 (914)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~E 787 (914)
-.|-+|.+.+.+.| |. .
T Consensus 198 --------------------------------------------------------K~w~L~pP~~~~~l--y~--~--- 214 (338)
T 3al5_A 198 --------------------------------------------------------KRVVLFSPRDAQYL--YL--K--- 214 (338)
T ss_dssp --------------------------------------------------------EEEEEECGGGGGGG--TE--E---
T ss_pred --------------------------------------------------------EEEEEECCCCCCCC--CC--C---
T ss_conf --------------------------------------------------------89999796544443--64--7---
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCH
Q ss_conf 0889999888657987677412099889999988496211686405876885689941114653321000133586678
Q 002513 788 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 866 (914)
Q Consensus 788 f~~~~~~~~~~v~dPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 866 (914)
+ .....+. +.+|-. ..|= ++. .+.++.+++.+||++|||+|..|||+|+-.||-|..-|.++..-
T Consensus 215 -~-~~~~~~d-~~~~d~--~~~p------~~~---~~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~~ 279 (338)
T 3al5_A 215 -G-TKSEVLN-IDNPDL--AKYP------LFS---KARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPSE 279 (338)
T ss_dssp -T-TEESCCC-SSSCCT--TTCT------TGG---GCCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCGG
T ss_pred -C-CCCCCCC-CCCCCH--HHCC------CCC---CCCCEEEEECCCCEEEECCCCEEEEEECCCEEEEEEEECCCCCC
T ss_conf -8-8764456-888653--3291------313---68778999889888997899828876679879999870588622
No 10
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=1.00 E-value=1 Score=84.77 Aligned_cols=257 Identities=19% Similarity=0.269 Sum_probs=144.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCC-----CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEECCHHHHHCCCC
Q ss_conf 888999762399879952445688888-----761333457763110011233472489826999347321333321237
Q 002513 488 IGNFRKHWVKGEPVIVKQVCDSSSMSI-----WDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYS 562 (914)
Q Consensus 488 l~hFQ~hW~kGePVIV~~Vl~~~s~ls-----W~P~~mwr~~~e~~~~~~~~~~~~vkaiDCld~~ev~i~i~~Ff~Gy~ 562 (914)
...|+++ .-..||||.+.-. .|+- |+-..+ .+. + ..+..|.++|+.+...+.+++++|.+=|.
T Consensus 56 ~~yl~~~-g~~~Pvli~~~~g--lgm~~P~~~~tv~~v----~~~----v-G~d~~V~ViDv~~Q~~~~M~l~~yv~Y~~ 123 (392)
T 3pua_A 56 LGYMEEH-GFTEPILVPKKDG--LGLAVPAPTFYVSDV----ENY----V-GPERSVDVTDVTKQKDCKMKLKEFVDYYY 123 (392)
T ss_dssp HHHHHHH-TTCSCEEESSCTT--TTCBCCCTTCCHHHH----HHH----H-CTTCEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred HHHHHHC-CCCCCEEEECCCC--CCCCCCCCCCCHHHH----HHH----C-CCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9999765-8986489827864--568589887999999----987----3-99817831343767575323999999986
Q ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHH--HCHHHHHHCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCCC--HHHCC
Q ss_conf 88324899851032069999410288851--15168873799-512257898510110039998899998862--00024
Q 002513 563 EGRVREDGWPEMLKLKDWPSPSASEEFLL--YHKPEFISKLP-LLEYIHSRLGFLNVAAKLPHYSLQNDVGPK--IYMSY 637 (914)
Q Consensus 563 ~gr~~~~gwp~mLKLKDWPps~~F~e~lP--~h~~efi~aLP-~~EYt~pr~G~LNLAskLP~~~lkPDLGPK--~YIAY 637 (914)
... ++ ..|=|-|+--+.. .|- .+.++|..-+- +..| .|+..+. --|+ .|+-
T Consensus 124 ~~~-re----~~lnv~dlefs~t---~L~~~~~~P~lv~d~d~v~~~-------------wp~~~~~--~rP~v~r~~~- 179 (392)
T 3pua_A 124 STN-RK----RVLNVTNLEFSDT---RMSSFVEPPDIVKKLSWVENY-------------WPDDALL--AKPKVTKYCL- 179 (392)
T ss_dssp CSS-CC----SCEEEEEEECTTS---GGGGGCBCCHHHHHHCHHHHH-------------SCTTCSS--CCCSCSCEEE-
T ss_pred CCC-CC----CCEEEEECCCCCC---HHHCCCCCCHHHHHHHHHHHC-------------CCHHHHH--CCCCCEEEEE-
T ss_conf 058-87----5507630114642---111256683046553010110-------------6423553--3897405999-
Q ss_pred CCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55212358998311110121043354423545689821467420110000123579997667999989876899888851
Q 002513 638 GTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNE 717 (914)
Q Consensus 638 G~~eelG~GdSvTkLH~DmSDAVNIL~htaev~~~~~~~~~I~~l~~k~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 717 (914)
.|...|.|.+|.|+... ++..|+
T Consensus 180 -----mGp~gS~T~fHiD~~gT-s~w~~v--------------------------------------------------- 202 (392)
T 3pua_A 180 -----ICVKDSYTDFHIDSGGA-SAWYHV--------------------------------------------------- 202 (392)
T ss_dssp -----EECTTCEEEEECCGGGC-EEEEEE---------------------------------------------------
T ss_pred -----EECCCCCCCEEECCCCC-CEEEEE---------------------------------------------------
T ss_conf -----90898889875899997-143453---------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00134565102311158765651000000011368889988999960114305899679999999988540889999888
Q 002513 718 HVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTND 797 (914)
Q Consensus 718 ~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~ 797 (914)
-.|-=.|=+|++.+.+ +..|- .+.- .
T Consensus 203 ------------------------------------------i~GrK~w~L~PPt~~n-l~~y~--~~~~---s------ 228 (392)
T 3pua_A 203 ------------------------------------------LKGEKTFYLIRPASAN-ISLYE--RWRS---A------ 228 (392)
T ss_dssp ------------------------------------------EEEEEEEEEECCCHHH-HHHHH--HHHH---S------
T ss_pred ------------------------------------------CCCEEEEEEECCCCCC-CCCHH--HCCC---C------
T ss_conf ------------------------------------------0526999997987323-23011--1245---7------
Q ss_pred CCCCCCCCCCEEECHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHH-HH
Q ss_conf 65798767741209988999998849621168640587688568994111465332100013358667899999999-97
Q 002513 798 FVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAE-EI 876 (914)
Q Consensus 798 ~v~dPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLte-Ef 876 (914)
.+ ....||-+ ...+++.++|..||++|||+|..|||.|+..||-+...|++..|+..-++..+ |-
T Consensus 229 ---~~-~~e~~~~~----------~~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~ 294 (392)
T 3pua_A 229 ---SN-HSEMFFAD----------QVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVER 294 (392)
T ss_dssp ---TT-GGGSCGGG----------GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred ---CC-HHHHHHCC----------CCCCEEEEEECCCCEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf ---53-34445244----------46633899987886786179966998527888998673167250999999998898
Q ss_pred HCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHHH
Q ss_conf 229953323323010010236665100354432
Q 002513 877 RCLPNDHEAKLQVLEVRQRKLFQEVFSPLLSLK 909 (914)
Q Consensus 877 R~Lp~~H~akeDkLeVkkm~lya~~~~~~~~lk 909 (914)
| +.... +-.--.-.+|++|++.+ .+..|+
T Consensus 295 ~-~~~~~--~f~fp~F~~~~wy~~~~-~l~~~~ 323 (392)
T 3pua_A 295 R-LKLGS--LTQFPNFETACWYMGKH-LLEAFK 323 (392)
T ss_dssp H-HTCCC--SSCCTTHHHHHHHHHHH-HHHHHH
T ss_pred H-HCCCC--CCCCCCHHHHHHHHHHH-HHHHHH
T ss_conf 7-27875--47488758879999999-999987
Done!