BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002514
(913 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 200/627 (31%), Positives = 289/627 (46%), Gaps = 68/627 (10%)
Query: 243 SLEFLDLSENNLT-SSVYPWLF-NVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYS 300
SLE LDLS N+++ ++V W+ + L L +S N + G + V+L+ L + S
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS 206
Query: 301 NELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGP 360
N GIP F G+ L L + N+L+G I C + L+ L++S+N GP
Sbjct: 207 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST----CTE--LKLLNISSNQFVGP 259
Query: 361 IPEXXXXXXXXXXXXXXNRLNGTINQSL-GRMYKLEKLSLGGNSLTGVISEDFFSNTSNL 419
IP N+ G I L G L L L GN G + F S +
Sbjct: 260 IPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 420 KNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPD----LSLRFDTYDI 475
+ + S DT+ L + L L+LS N+ G+LP+ LS T D+
Sbjct: 319 SLALSSNNFSGELPMDTL------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 476 SSNHFEGPIPPL----PSNA-SVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRL 530
SSN+F GPI P P N L L N F+G I S + +L+ L LS N LSG +
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTI 431
Query: 531 PDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKL 590
P +L L L N G+IP + + ++ L L N LTGE+PS L NC L
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGI 650
+ L N L+GEIP WIG L L +L L +N F G IP +L + LDL++N G
Sbjct: 492 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 651 IPKCFNNFTAMAQEKSSVLS---VTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKY 707
IP AM ++ + + Y +I + G + L ++G + +
Sbjct: 551 IP------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQ 600
Query: 708 QNTL------------------------GLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNL 743
N L G + LD+S N L G +P+EI + L +NL
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 744 SRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSG 803
N+++G I ++ L+ L+ LDLS N+ G IP ++S L+ L+ +DLS NNLSG IP
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 804 TQLQSFNASTYAGNE-LCGLPLPNKCP 829
Q ++F + + N LCG PLP P
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 217/504 (43%), Gaps = 60/504 (11%)
Query: 110 LQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLG 169
L+ L YL L++N F+G I DF+ L LDL F G+VPP G+ S L+ L L
Sbjct: 265 LKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 170 YNDLLSVGNXXXXXXXXXXXXXXXXXXXXXXXXXDWPL-VVYKLSSLTTLILEGCDLPPF 228
N+ + P+ + K+ L L L +
Sbjct: 324 SNNF----------------------------SGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 229 FPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLF-NVSSNLVELGLSSNLLQGSIPDAF 287
P + N S SL LDLS NN + + P L N + L EL L +N G IP
Sbjct: 356 LPES----LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 288 EHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSL 347
+ L +L L N L G IP G++ L +L L N L G++ + + + +L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK------TL 465
Query: 348 ESLDLSANAVTGPIPEXXXXXXXXX-XXXXXNRLNGTINQSLGRMYKLEKLSLGGNSLTG 406
E+L L N +TG IP NRL G I + +GR+ L L L NS +G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 407 VISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLS-------FLNLSNNQI 459
I + S + WLD++ + TIP + S K + ++ + N+ +
Sbjct: 526 NIPAELGDCRS-----LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 460 KGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYL 519
K + + I S S + N++ + G S +G +M+L
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLN-----RLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFL 634
Query: 520 DLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELP 579
D+S N+LSG +P L IL+L +N+ SG IPD +G L + IL L +N+L G +P
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 580 STLQNCLLLKLMDLGRNALSGEIP 603
+ +L +DL N LSG IP
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIP 718
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 133/354 (37%), Gaps = 42/354 (11%)
Query: 79 CRNKTHHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSK 138
C+N + + L LQ+ K + P+L L L LS N SG I +GSLS K
Sbjct: 386 CQNPKNTLQELYLQNNGFTGK---IPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS-K 440
Query: 139 LRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNXXXXXXXXXXXXXXXXXXXX 198
LR L L G +P +L + L+ L L +NDL
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSN 496
Query: 199 XXXXXDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSV 258
+ P + +L +L L L S + P L +SL +LDL+ N ++
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 259 YPWLFNVSSNLV-------------------ELGLSSNLL--QGSIPDAFEHMVSLQTLF 297
+F S + E + NLL QG + + +
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 298 LYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAV 357
+ S G F N + L + N L+G + + I ++ L L+L N +
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP------YLFILNLGHNDI 665
Query: 358 TGPIP-EXXXXXXXXXXXXXXNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISE 410
+G IP E N+L+G I Q++ + L ++ L N+L+G I E
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 738 LIAMNLSRNNLTGQITP--KISQLKSLDFLDLSRNRF-FGGIPSSLSQLSGLSVMDLSYN 794
L +++LSRN+L+G +T + L FL++S N F G S +L+ L V+DLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 795 NLSG 798
++SG
Sbjct: 159 SISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 200/627 (31%), Positives = 289/627 (46%), Gaps = 68/627 (10%)
Query: 243 SLEFLDLSENNLT-SSVYPWLF-NVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYS 300
SLE LDLS N+++ ++V W+ + L L +S N + G + V+L+ L + S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSS 209
Query: 301 NELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGP 360
N GIP F G+ L L + N+L+G I C + L+ L++S+N GP
Sbjct: 210 NNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST----CTE--LKLLNISSNQFVGP 262
Query: 361 IPEXXXXXXXXXXXXXXNRLNGTINQSL-GRMYKLEKLSLGGNSLTGVISEDFFSNTSNL 419
IP N+ G I L G L L L GN G + F S +
Sbjct: 263 IPPLPLKSLQYLSLAE-NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 420 KNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPD----LSLRFDTYDI 475
+ + S DT+ L + L L+LS N+ G+LP+ LS T D+
Sbjct: 322 SLALSSNNFSGELPMDTL------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 476 SSNHFEGPIPPL----PSNA-SVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRL 530
SSN+F GPI P P N L L N F+G I S + +L+ L LS N LSG +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTI 434
Query: 531 PDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKL 590
P +L L L N G+IP + + ++ L L N LTGE+PS L NC L
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGI 650
+ L N L+GEIP WIG L L +L L +N F G IP +L + LDL++N G
Sbjct: 495 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 651 IPKCFNNFTAMAQEKSSVLS---VTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKY 707
IP AM ++ + + Y +I + G + L ++G + +
Sbjct: 554 IP------AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL----LEFQGIRSEQ 603
Query: 708 QNTL------------------------GLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNL 743
N L G + LD+S N L G +P+EI + L +NL
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 744 SRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSG 803
N+++G I ++ L+ L+ LDLS N+ G IP ++S L+ L+ +DLS NNLSG IP
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 804 TQLQSFNASTYAGNE-LCGLPLPNKCP 829
Q ++F + + N LCG PLP P
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 146/504 (28%), Positives = 217/504 (43%), Gaps = 60/504 (11%)
Query: 110 LQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLG 169
L+ L YL L++N F+G I DF+ L LDL F G+VPP G+ S L+ L L
Sbjct: 268 LKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 170 YNDLLSVGNXXXXXXXXXXXXXXXXXXXXXXXXXDWPL-VVYKLSSLTTLILEGCDLPPF 228
N+ + P+ + K+ L L L +
Sbjct: 327 SNNF----------------------------SGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 229 FPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLF-NVSSNLVELGLSSNLLQGSIPDAF 287
P + N S SL LDLS NN + + P L N + L EL L +N G IP
Sbjct: 359 LPES----LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 288 EHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSL 347
+ L +L L N L G IP G++ L +L L N L G++ + + + +L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK------TL 468
Query: 348 ESLDLSANAVTGPIPEXXXXXXXXX-XXXXXNRLNGTINQSLGRMYKLEKLSLGGNSLTG 406
E+L L N +TG IP NRL G I + +GR+ L L L NS +G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 407 VISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLS-------FLNLSNNQI 459
I + S + WLD++ + TIP + S K + ++ + N+ +
Sbjct: 529 NIPAELGDCRS-----LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 460 KGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYL 519
K + + I S S + N++ + G S +G +M+L
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLN-----RLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFL 637
Query: 520 DLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELP 579
D+S N+LSG +P L IL+L +N+ SG IPD +G L + IL L +N+L G +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 580 STLQNCLLLKLMDLGRNALSGEIP 603
+ +L +DL N LSG IP
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 133/354 (37%), Gaps = 42/354 (11%)
Query: 79 CRNKTHHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSK 138
C+N + + L LQ+ K + P+L L L LS N SG I +GSLS K
Sbjct: 389 CQNPKNTLQELYLQNNGFTGK---IPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS-K 443
Query: 139 LRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNXXXXXXXXXXXXXXXXXXXX 198
LR L L G +P +L + L+ L L +NDL
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSN 499
Query: 199 XXXXXDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSV 258
+ P + +L +L L L S + P L +SL +LDL+ N ++
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSF-----SGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 259 YPWLFNVSSNLV-------------------ELGLSSNLL--QGSIPDAFEHMVSLQTLF 297
+F S + E + NLL QG + + +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 298 LYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAV 357
+ S G F N + L + N L+G + + I ++ L L+L N +
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP------YLFILNLGHNDI 668
Query: 358 TGPIP-EXXXXXXXXXXXXXXNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISE 410
+G IP E N+L+G I Q++ + L ++ L N+L+G I E
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 738 LIAMNLSRNNLTGQITP--KISQLKSLDFLDLSRNRF-FGGIPSSLSQLSGLSVMDLSYN 794
L +++LSRN+L+G +T + L FL++S N F G S +L+ L V+DLS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 795 NLSG 798
++SG
Sbjct: 162 SISG 165
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 131/291 (45%), Gaps = 35/291 (12%)
Query: 539 RLGILDLANNNFSGK--IPDSMGSLPNIQILSLHN-NRLTGELPSTLQNCLLLKLMDLGR 595
R+ LDL+ N IP S+ +LP + L + N L G +P + L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 596 NALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+SG IP ++ + + L+ L N G +P + LP + + N I G IP +
Sbjct: 111 TNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 656 NNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVK 715
+F+ + F S + N G+ T+ +
Sbjct: 170 GSFSKL---------------FTS-----MTISRNRLTGKIPPTFANLNLAF-------- 201
Query: 716 MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGG 775
+DLS N L G+ ++L++N+L + K+ K+L+ LDL NR +G
Sbjct: 202 -VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259
Query: 776 IPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNE-LCGLPLP 825
+P L+QL L +++S+NNL G+IP G LQ F+ S YA N+ LCG PLP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 140/332 (42%), Gaps = 53/332 (15%)
Query: 37 CIDEEREALLSFKQSLVDEHGFLSSWGSEDNKSDCCE--WIGVYCRN--KTHHVYALDLQ 92
C ++++ALL K+ L + LSSW +DCC W+GV C +T+ V LDL
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 93 DGSLKLKGTILSPSLRKLQHLTYLDLSD-NDFSGIPIADFIGSLSSKLRHLDLGWAGFAG 151
+L I S SL L +L +L + N+ G PI I L+ +L +L + +G
Sbjct: 59 GLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVG-PIPPAIAKLT-QLHYLYITHTNVSG 115
Query: 152 SVPPQLGNLSNLQYLNLGYNDLLSVGNXXXXXXXXXXXXXXXXXXXXXXXXXDWPLVVYK 211
++P L + L L+ YN L P +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGT----------------------------LPPSISS 147
Query: 212 LSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVE 271
L +L + +G + P + + + SK + +S N LT + P N+ NL
Sbjct: 148 LPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAF 201
Query: 272 LGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQL 331
+ LS N+L+G F + Q + L N L + K G LN L L +N++ G L
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260
Query: 332 FEFIQNLSCGCAKNSLESLDLSANAVTGPIPE 363
+ + L L SL++S N + G IP+
Sbjct: 261 PQGLTQLKF------LHSLNVSFNNLCGEIPQ 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 48/186 (25%)
Query: 515 KLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNI---------- 564
+L YL +++ +SG +PD L LD + N SG +P S+ SLPN+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 565 ---------------QILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGES 609
+++ NRLTG++P T N L L +DL RN L G+ G
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSD 220
Query: 610 -------LPK---------------LIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647
L K L L L +N+ +G +P L L F+ L++S NN+
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 648 PGIIPK 653
G IP+
Sbjct: 281 CGEIPQ 286
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 92/208 (44%), Gaps = 15/208 (7%)
Query: 378 NRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTI 437
N L G I ++ ++ +L L + +++G I DF S L LD S +S T+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT----LDFSYNALSGTL 141
Query: 438 PDWFWDLSRKKLSFLNLSNNQIKGKLPD----LSLRFDTYDISSNHFEGPIPPLPSNASV 493
P L L + N+I G +PD S F + IS N G IPP +N ++
Sbjct: 142 PPSISSL--PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 494 --LNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFS 551
++LS+N G S L S + L+ N L+ L L L LDL NN
Sbjct: 200 AFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRNNRIY 257
Query: 552 GKIPDSMGSLPNIQILSLHNNRLTGELP 579
G +P + L + L++ N L GE+P
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 33/262 (12%)
Query: 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLT 575
+Y+ NNL+ G +P +L L + + N SG IPD + + + L N L+
Sbjct: 80 FLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 576 GELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLP 635
G LP ++ + L + N +SG IP G +++ N+ G IP +L
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL- 197
Query: 636 FIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQ 695
+ +DLS N M + +SVL F SD + + +
Sbjct: 198 NLAFVDLSRN---------------MLEGDASVL-------FGSDKNTQKI-----HLAK 230
Query: 696 AELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 755
L + + L LDL +N++ G +P+ + L L ++N+S NNL G+I P+
Sbjct: 231 NSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQ 286
Query: 756 ISQLKSLDFLDLSRNRFFGGIP 777
L+ D + N+ G P
Sbjct: 287 GGNLQRFDVSAYANNKCLCGSP 308
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 109/264 (41%), Gaps = 20/264 (7%)
Query: 218 LILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSE-NNLTSSVYPWLFNVSSNLVELGLSS 276
L L G +LP +P P L + L FL + NNL + P + ++ L L ++
Sbjct: 55 LDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITH 110
Query: 277 NLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQ 336
+ G+IPD + +L TL N L G +P ++ L + N+++G + +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD--- 167
Query: 337 NLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTINQSLGRMYKLEK 396
S G S+ +S N +TG IP N L G + G +K
Sbjct: 168 --SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 397 LSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSN 456
+ L NSL F L ++ LD+ N I T+P L K L LN+S
Sbjct: 226 IHLAKNSLA------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLNVSF 277
Query: 457 NQIKGKLPDLS--LRFDTYDISSN 478
N + G++P RFD ++N
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANN 301
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 130/548 (23%), Positives = 214/548 (39%), Gaps = 81/548 (14%)
Query: 268 NLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPK--FFGNMCCLNELVLCSN 325
NL L L S+ + PDAF+ + L L LY L + K +F N+ L L L N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 326 QLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTIN 385
Q+ + S G NSL+S+D S+N + L G
Sbjct: 134 QIRS----LYLHPSFG-KLNSLKSIDFSSNQI------------FLVCEHELEPLQGK-- 174
Query: 386 QSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQI-DWLDISNTGISDTIPDWFWDL 444
L SL NSL +S D+ + +N + + LD+S G + I F +
Sbjct: 175 -------TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227
Query: 445 SRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGS 504
K +F + + I G + D N F G S+ L+LS + F S
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFH---NIKDPDQNTFAGLAR---SSVRHLDLS-HGFVFS 280
Query: 505 ISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNI 564
++ + L L+L+ N ++ + + D L +L+L+ N + LP +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 565 QILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG-----EIPTWI--GESLPKLIVLS 617
+ L N + T + L+ +DL NAL+ IP G L L ++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 618 LMSNKFH---------GIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSV 668
L +N H I+ F L +P +QIL L+ N F++ + +++
Sbjct: 401 LTANLIHLSENRLENLDILYF-LLRVPHLQILILNQ-----------NRFSSCSGDQTPS 448
Query: 669 LSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEV 728
+ + F+ + L W + EL W + L +++L L+ N L
Sbjct: 449 ENPSLEQLFLGENMLQLAW-------ETELCWDVFE-----GLSHLQVLYLNHNYLNSLP 496
Query: 729 PEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSV 788
P L L ++L+ N LT + +L+ LD+SRN+ P LSV
Sbjct: 497 PGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDV---FVSLSV 551
Query: 789 MDLSYNNL 796
+D+++N
Sbjct: 552 LDITHNKF 559
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIP-----DAFEHMVSLQTLFL 298
L+ L L++N +S + + +L +L L N+LQ + D FE + LQ L+L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487
Query: 299 YSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVT 358
N L P F ++ L L L SN+LT LS +LE LD+S N +
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--------LSHNDLPANLEILDISRNQLL 539
Query: 359 GPIPE 363
P P+
Sbjct: 540 APNPD 544
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 710 TLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSR 769
TL +K+L+L+ NK+ E L L +NLS N L + L + ++DL +
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347
Query: 770 NRFFGGIPSSLSQLSGLSVMDLSYNNLSGK--IPSGTQLQSFNASTYAGNELCGLPLPN 826
N + L L +DL N L+ IPS + +GN+L LP N
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI------FLSGNKLVTLPKIN 400
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 108/248 (43%), Gaps = 11/248 (4%)
Query: 554 IPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKL 613
IPD + S NI +L+L +N+L P+ L ++D G N++S P + + LP L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLL 75
Query: 614 IVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTS 673
VL+L N+ I + LDL SN+I I F N + + S ++S
Sbjct: 76 KVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 674 NYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIM 733
+ + G + L + + ++ L K LDLSSN L P
Sbjct: 136 --TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK-LDLSSNPLKEFSPGCFQ 192
Query: 734 DLVGLIAMNLSRNNLTGQITPKIS---QLKSLDFLDLSRNRFFGGIPSSLSQL--SGLSV 788
+ L A+ L+ L +T K+ S+ L L+ N+ S+ S L + L+
Sbjct: 193 TIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ 252
Query: 789 MDLSYNNL 796
+DLSYNNL
Sbjct: 253 LDLSYNNL 260
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 132/353 (37%), Gaps = 80/353 (22%)
Query: 467 SLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLL 526
++R++ D S LPSN +VLNL+ N+
Sbjct: 3 TVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLR------------------------ 38
Query: 527 SGRLPDC-WLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNC 585
RLP + + +L ILD N+ S P+ LP +++L+L +N L+ T C
Sbjct: 39 --RLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFC 96
Query: 586 LLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKF---------------------H 624
L +DL N++ +I + ++ LI L L N +
Sbjct: 97 TNLTELDLMSNSIH-KIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKN 155
Query: 625 GIIPFQLCHLPF-----IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFIS 679
I+ + L F ++ LDLSSN + P CF Q + ++ N + +
Sbjct: 156 KILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF-------QTIGKLFALLLNNAQL- 207
Query: 680 DGGFPLVWYDNSYFGQAELTWKGSQYKYQN-TLGLVKMLDLSSNKLGGEVPEEIMDLVGL 738
N + + +L W+ S QN +L ++L S + G + L
Sbjct: 208 ----------NPHLTE-KLCWELSNTSIQNLSLANNQLLATSESTFSG------LKWTNL 250
Query: 739 IAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDL 791
++LS NNL S L SL +L L N P S LS L + L
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 122/325 (37%), Gaps = 57/325 (17%)
Query: 508 LC-SISGHKLMYLDLSNNLLSGRLPDCW--LLFDRLGILDLANNNFSGKIPDSMGSLPNI 564
LC +S + L L+NN L + L + L LDL+ NN S LP++
Sbjct: 215 LCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSL 274
Query: 565 QILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFH 624
+ LSL N + P + L+ + L R + SL S+
Sbjct: 275 RYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV--------------SLASHP-- 318
Query: 625 GIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMA----QEKSSVLSVTSNYSFISD 680
I F L +++ L++ NNIP F ++ + + L +N +F+S
Sbjct: 319 NIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 681 GGFPLVWYD-------------NSYFGQAEL---------------TWKGSQYKYQNTLG 712
PL+ + S+ GQ + W+G + ++ L
Sbjct: 379 AHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS 438
Query: 713 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRF 772
K L LS++ VP L L+ ++ N+ +P L++L LDLS N
Sbjct: 439 YNKYLQLSTSSFAL-VP----SLQRLMLRRVALKNVDISPSP-FRPLRNLTILDLSNNNI 492
Query: 773 FGGIPSSLSQLSGLSVMDLSYNNLS 797
L L L ++D +NNL+
Sbjct: 493 ANINEDLLEGLENLEILDFQHNNLA 517
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 102/269 (37%), Gaps = 38/269 (14%)
Query: 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMG---SLPNIQILSLHNN 572
L LDLS+N L P C+ +L L L N + + + + S +IQ LSL NN
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN 232
Query: 573 RLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLC 632
+L L+ T+ G L L L N H +
Sbjct: 233 QL-----------------------LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFS 269
Query: 633 HLPFIQILDLSSNNIPGIIPKCF---NNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYD 689
+LP ++ L L NNI + P+ F +N ++ +++ S S + F W
Sbjct: 270 YLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWL- 328
Query: 690 NSYFGQAELTWKGSQYKYQNTL-GLVKMLDLSSNK----LGGEVPEEIMDLVG--LIAMN 742
Y + NT GLV + LS +K L E + L L+ +N
Sbjct: 329 -KYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 743 LSRNNLTGQITPKISQLKSLDFLDLSRNR 771
L++N+++ S L L LDL N
Sbjct: 388 LTKNHISKIANGTFSWLGQLRILDLGLNE 416
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 113/282 (40%), Gaps = 44/282 (15%)
Query: 398 SLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNN 457
S N+ TG++S + S L + T + + F L+ L LNL+ N
Sbjct: 343 STKSNTFTGLVSLKYLS-----------LSKTFTSLQTLTNETFVSLAHSPLLTLNLTKN 391
Query: 458 QIKG------------KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKF---- 501
I ++ DL L +S + G N + LS NK+
Sbjct: 392 HISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGL-----RNIFEIYLSYNKYLQLS 446
Query: 502 SGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSL 561
+ S + + S+ L + L N +S P + L ILDL+NNN + D + L
Sbjct: 447 TSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEGL 503
Query: 562 PNIQILSLHNNRLT--------GELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKL 613
N++IL +N L G + L+ L +++L N L EIP + ++L +L
Sbjct: 504 ENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVFKNLFEL 562
Query: 614 IVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
++L N + + PF ++ L+L N I + F
Sbjct: 563 KSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVF 604
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 212 LSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVE 271
L L TLIL+ L FF A L + SLE LD+S N+L S Y + +++
Sbjct: 376 LKRLQTLILQRNGLKNFFKVA---LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432
Query: 272 LGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
L LSSN+L GS+ V + L L++N + IPK ++ L EL + SNQL
Sbjct: 433 LNLSSNMLTGSVFRCLPPKV--KVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL 485
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 423 IDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSN--NQI----KGKLPDL--SLRFDTYD 474
+++L+I N I++ I + S L L + + NQ+ K L + +
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337
Query: 475 ISSNHFEGPI-PPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDC 533
IS F + PP PS+ + LN ++N F+ S+ CS + +L L L N L
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVA 396
Query: 534 WLL--FDRLGILDLANNNFSGKIPDSMGS-LPNIQILSLHNNRLTGELPSTLQNCLLLKL 590
+ L LD++ N+ + D + +I +L+L +N LTG + L
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP------- 449
Query: 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGI 650
PK+ VL L +N+ IP + HL +Q L+++SN + +
Sbjct: 450 --------------------PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV 488
Query: 651 IPKCFNNFTAM 661
F+ T++
Sbjct: 489 PDGVFDRLTSL 499
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 714 VKMLDLSSNKLGGEVPEEIMDLV-GLIAMNLSRNNLTGQI----TPKISQLKSLDFLDLS 768
++ LD+S N L + ++ +NLS N LTG + PK+ LDL
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK------VLDLH 458
Query: 769 RNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGT 804
NR IP ++ L L ++++ N L +P G
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGV 492
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 52/234 (22%)
Query: 579 PSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQ 638
P QN LL ++ L RN LS +P I + PKL LS+ +N I +Q
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 639 ILDLSSNNIPGI----IPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFG 694
L LSSN + + IP F+ +Y+ +S P+
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFH--------------ANVSYNLLSTLAIPIAV------- 213
Query: 695 QAELTWKGSQYKYQNTLGLVK--------MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 746
EL N++ +V+ +L L N L +++ GL+ ++LS N
Sbjct: 214 -EELDAS------HNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYN 264
Query: 747 NLTGQITPKISQLKSLDFLDLSRNRFFG----GIPSSLSQLSGLSVMDLSYNNL 796
L + +++ L+ L +S NR G P + L V+DLS+N+L
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHL 313
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 251 ENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGG---- 306
E N SS+ +F+ + L L +S+N L+ D F+ SLQ L L SN L
Sbjct: 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 190
Query: 307 IPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPI 361
IP F N + L+ A L++ S N V GP+
Sbjct: 191 IPSLFHANVSYN---------------LLSTLAIPIAVEELDASHNSINVVRGPV 230
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 52/234 (22%)
Query: 579 PSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQ 638
P QN LL ++ L RN LS +P I + PKL LS+ +N I +Q
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 639 ILDLSSNNIPGI----IPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFG 694
L LSSN + + IP F+ +Y+ +S P+
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFH--------------ANVSYNLLSTLAIPI--------A 206
Query: 695 QAELTWKGSQYKYQNTLGLVK--------MLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 746
EL N++ +V+ +L L N L +++ GL+ ++LS N
Sbjct: 207 VEELDAS------HNSINVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYN 258
Query: 747 NLTGQITPKISQLKSLDFLDLSRNRFFG----GIPSSLSQLSGLSVMDLSYNNL 796
L + +++ L+ L +S NR G P + L V+DLS+N+L
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHL 307
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 19/115 (16%)
Query: 251 ENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGG---- 306
E N SS+ +F+ + L L +S+N L+ D F+ SLQ L L SN L
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184
Query: 307 IPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPI 361
IP F N + L+ A L++ S N V GP+
Sbjct: 185 IPSLFHANVSYN---------------LLSTLAIPIAVEELDASHNSINVVRGPV 224
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 545 LANNNFSGKIPDS--MGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEI 602
L N+N G+I G LP++ L L N+LTG P+ + ++ + LG N + EI
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EI 93
Query: 603 PTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSN 645
+ L +L L+L N+ ++P HL + L+L+SN
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 233 DDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVS 292
D PLH + E L L++N L LF +LV+L L N L G P+AFE
Sbjct: 26 DIPLH-----TTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 293 LQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDL 352
+Q L L N+++ K F + L L L NQ++ + ++L NSL SL+L
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL------NSLTSLNL 133
Query: 353 SAN 355
++N
Sbjct: 134 ASN 136
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 56/291 (19%)
Query: 540 LGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALS 599
L +LDL+ NN + DS LP ++ L N + +L ++ ++L R+
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 600 GEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFN--- 656
I SLPK I F L ++ L++ N+IPGI F
Sbjct: 315 QSISL---ASLPK-------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 358
Query: 657 --NFTAMAQEKSSVLSVTSNYSFISDGGFPL------------VWYDN-SYFGQAEL--- 698
+ +++ +S+ ++T N +F+S PL + D S+ G E+
Sbjct: 359 NLKYLSLSNSFTSLRTLT-NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 417
Query: 699 ------------TWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 746
W+G + ++ L K L L+ N VP L L+ ++
Sbjct: 418 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VP----SLQRLMLRRVALK 472
Query: 747 NLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLS 797
N+ +P L++L LDLS N L L L ++DL +NNL+
Sbjct: 473 NVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 113 LTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYND 172
+T L+L+ N +P A+F + S+L LD+G+ + P L L+ LNL +N+
Sbjct: 32 ITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 173 L 173
L
Sbjct: 90 L 90
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 48/282 (17%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISN--TGISDTIPDWFWDLSRKKLSF 451
LE L++ N + G+ S + F+ NLK +L +SN T + + F L+ L
Sbjct: 336 LEHLNMEDNDIPGIKS-NMFTGLINLK----YLSLSNSFTSLRTLTNETFVSLAHSPLHI 390
Query: 452 LNLSNNQIKG------------KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKN 499
LNL+ N+I ++ DL L +++ + G N + LS N
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----ENIFEIYLSYN 445
Query: 500 KF----SGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIP 555
K+ S + + S+ L + L N P + L ILDL+NNN +
Sbjct: 446 KYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIND 502
Query: 556 DSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIV 615
D + L ++IL L +N L L ++A G P + + L L +
Sbjct: 503 DMLEGLEKLEILDLQHNNLA----------------RLWKHANPGG-PIYFLKGLSHLHI 545
Query: 616 LSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNN 657
L+L SN F I L ++I+DL NN+ + FNN
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 587
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 56/291 (19%)
Query: 540 LGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALS 599
L +LDL+ NN + DS LP ++ L N + +L ++ ++L R+
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 600 GEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFN--- 656
I SLPK I F L ++ L++ N+IPGI F
Sbjct: 320 QSISL---ASLPK-------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 363
Query: 657 --NFTAMAQEKSSVLSVTSNYSFISDGGFPL------------VWYDN-SYFGQAEL--- 698
+ +++ +S+ ++T N +F+S PL + D S+ G E+
Sbjct: 364 NLKYLSLSNSFTSLRTLT-NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 422
Query: 699 ------------TWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 746
W+G + ++ L K L L+ N VP L L+ ++
Sbjct: 423 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VP----SLQRLMLRRVALK 477
Query: 747 NLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLS 797
N+ +P L++L LDLS N L L L ++DL +NNL+
Sbjct: 478 NVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 113 LTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYND 172
+T L+L+ N +P A+F + S+L LD+G+ + P L L+ LNL +N+
Sbjct: 37 ITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 173 L 173
L
Sbjct: 95 L 95
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 48/282 (17%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISN--TGISDTIPDWFWDLSRKKLSF 451
LE L++ N + G+ S + F+ NLK +L +SN T + + F L+ L
Sbjct: 341 LEHLNMEDNDIPGIKS-NMFTGLINLK----YLSLSNSFTSLRTLTNETFVSLAHSPLHI 395
Query: 452 LNLSNNQIKG------------KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKN 499
LNL+ N+I ++ DL L +++ + G N + LS N
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----ENIFEIYLSYN 450
Query: 500 KF----SGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIP 555
K+ S + + S+ L + L N P + L ILDL+NNN +
Sbjct: 451 KYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIND 507
Query: 556 DSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIV 615
D + L ++IL L +N L L ++A G P + + L L +
Sbjct: 508 DMLEGLEKLEILDLQHNNLA----------------RLWKHANPGG-PIYFLKGLSHLHI 550
Query: 616 LSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNN 657
L+L SN F I L ++I+DL NN+ + FNN
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 592
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 115/291 (39%), Gaps = 56/291 (19%)
Query: 540 LGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALS 599
L +LDL+ NN + DS LP ++ L N + +L ++ ++L R+
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 600 GEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFN--- 656
I SLPK I F L ++ L++ N+IPGI F
Sbjct: 310 QSISL---ASLPK-------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353
Query: 657 --NFTAMAQEKSSVLSVTSNYSFISDGGFPL------------VWYDN-SYFGQAEL--- 698
+ +++ +S+ ++T N +F+S PL + D S+ G E+
Sbjct: 354 NLKYLSLSNSFTSLRTLT-NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 699 ------------TWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRN 746
W+G + ++ L K L L+ N VP L L+ ++
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VP----SLQRLMLRRVALK 467
Query: 747 NLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLS 797
N+ +P L++L LDLS N L L L ++DL +NNL+
Sbjct: 468 NVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 113 LTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYND 172
+T L+L+ N +P A+F + S+L LD+G+ + P L L+ LNL +N+
Sbjct: 27 ITVLNLTHNQLRRLPAANF--TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 173 L 173
L
Sbjct: 85 L 85
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 118/286 (41%), Gaps = 48/286 (16%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISN--TGISDTIPDWFWDLSRKKLSF 451
LE L++ N + G+ S + F+ NLK +L +SN T + + F L+ L
Sbjct: 331 LEHLNMEDNDIPGIKS-NMFTGLINLK----YLSLSNSFTSLRTLTNETFVSLAHSPLHI 385
Query: 452 LNLSNNQIKG------------KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKN 499
LNL+ N+I ++ DL L +++ + G N + LS N
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL-----ENIFEIYLSYN 440
Query: 500 KF----SGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIP 555
K+ S + + S+ L + L N P + L ILDL+NNN +
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKN---VDSSPSPFQPLRNLTILDLSNNNIANIND 497
Query: 556 DSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIV 615
D + L ++IL L +N L L ++A G P + + L L +
Sbjct: 498 DMLEGLEKLEILDLQHNNLA----------------RLWKHANPGG-PIYFLKGLSHLHI 540
Query: 616 LSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAM 661
L+L SN F I L ++I+DL NN+ + FNN ++
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 17/204 (8%)
Query: 110 LQHLTYLDLSDN--DFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLN 167
L L +LDLS N F G G+ S L++LDL + G LG L L++L+
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLG-LEQLEHLD 402
Query: 168 LGYNDLLSVGNXXXXXXXXXXXXXXXXXXXXXXXXXDWPLVVYKLSSLTTLILEGCDLPP 227
+++L + + LSSL L + G
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQE 459
Query: 228 -FFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA 286
F P L ++L FLDLS+ L + P FN S+L L ++SN L+ S+PD
Sbjct: 460 NFLPDIFTEL-----RNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLK-SVPDG 512
Query: 287 -FEHMVSLQTLFLYSNELEGGIPK 309
F+ + SLQ ++L++N + P+
Sbjct: 513 IFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%)
Query: 238 LNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLF 297
N SLE L ++ N+ + P +F NL L LS L+ P AF + SLQ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 298 LYSNELEGGIPKFFGNMCCLNELVLCSN 325
+ SN+L+ F + L ++ L +N
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 397 LSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSN 456
LS G S G S+ F TS + +LD+S G+ ++ + L F + +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTS-----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 457 NQIKGKLPDLSLRFDTY-DISSNH----FEGPIPPLPSNASVLNLSKNKFSGSISFLCSI 511
Q+ LSLR Y DIS H F G L S+ VL ++ N F + FL I
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQEN--FLPDI 465
Query: 512 --SGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSM-GSLPNIQILS 568
L +LDLS L P + L +L++A+N +PD + L ++Q +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIW 524
Query: 569 LHNN 572
LH N
Sbjct: 525 LHTN 528
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 240 SSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGS-IPDAFEHMVSLQTLFL 298
S ++L +LD+S + T + +FN S+L L ++ N Q + +PD F + +L L L
Sbjct: 419 SLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 299 YSNELEGGIPKFFGNMCCLNELVLCSNQL 327
+LE P F ++ L L + SNQL
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLN 453
LE L + GNS D F+ NL +LD+S + P F LS L LN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLS--SLQVLN 500
Query: 454 LSNNQIKGKLPD 465
+++NQ+K +PD
Sbjct: 501 MASNQLKS-VPD 511
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 563 NIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNK 622
N QIL LH+N++T P + + LK + LG N L G +P + +SL +L VL L +N+
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 623 F 623
Sbjct: 100 L 100
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 245 EFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIP-DAFEHMVSLQTLFLYSNEL 303
+ L L +N +T + P +F+ NL EL L SN L G++P F+ + L L L +N+L
Sbjct: 43 QILYLHDNQITK-LEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 304 EGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLS 339
F + L EL +C N+LT +L I+ L+
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 542 ILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLL-LKLMDLGRNALSG 600
IL L +N + P SL N++ L L +N+L G LP + + L L ++DLG N L+
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTA 660
+P+ + + L L L + NK +P + L + L L N + I F+ ++
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 661 MAQ 663
+
Sbjct: 161 LTH 163
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 243 SLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSN 301
S L+L N L S + +F+ + L +L LS N +Q S+PD F+ + L L+L+ N
Sbjct: 29 SATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86
Query: 302 ELEGGIPKFFGNMCCLNELVLCSNQL 327
+L+ F + L EL L +NQL
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSNE 302
L L L EN L S+ +F+ + L EL L +N L+ S+PD F+ + SLQ ++L++N
Sbjct: 78 LTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 135
Query: 303 LEGGIPKF 310
+ P+
Sbjct: 136 WDCSCPRI 143
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 451 FLNLSNNQIKGKL-------PDLSLR-FDTYDISSNHFEGPIPPLPSNASVLNLSKNKFS 502
+ ++SN +++G+L SL+ + + S+ F P + S +N+ S
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 503 GS--ISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFS--GKIPDSM 558
G+ + LC ++LD SNNLL+ + + L L L N KI +
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 559 GSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESL-PKLIVLS 617
+ ++Q L + N ++ + +C K + L N S + I L P++ VL
Sbjct: 371 TQMKSLQQLDISQNSVSYD--EKKGDCSWTKSL-LSLNMSSNILTDTIFRCLPPRIKVLD 427
Query: 618 LMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQ 663
L SNK IP Q+ L +Q L+++SN + + F+ T++ +
Sbjct: 428 LHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSNE 302
++ LDL N + S P L EL ++SN L+ S+PD F+ + SLQ ++L++N
Sbjct: 423 IKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479
Query: 303 LEGGIPKF 310
+ P+
Sbjct: 480 WDCSCPRI 487
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 267 SNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELE--GGIPKFFGNMCCLNELVLCS 324
S + L S+NLL ++ + H+ L+TL L N+L+ I + M L +L +
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 325 NQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPI 361
N ++ + C K SL SL++S+N +T I
Sbjct: 384 NSVSYDE----KKGDCSWTK-SLLSLNMSSNILTDTI 415
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 243 SLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPD-AFEHMVSLQTLFLYSN 301
+L +L L+ N L S+ +F+ +NL EL L N LQ S+PD F+ + +L L+LY N
Sbjct: 86 NLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHN 143
Query: 302 ELEGGIPKFFGNMCCLNELVLCSNQL 327
+L+ F + L L L +NQL
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 211 KLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLV 270
+L++LT LIL G L D L +L+ L L EN L S+ +F+ +NL
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKL-----TNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 271 ELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
L L N LQ F+ + +L L L +N+L+ F + L +L L NQL
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 208 VVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSS 267
V +L+SLT L L G L P+ N SL +L+LS N L S+ +F+ +
Sbjct: 47 VFDELTSLTQLYLGGNKLQSL-PNG----VFNKLTSLTYLNLSTNQL-QSLPNGVFDKLT 100
Query: 268 NLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSNELE 304
L EL L++N LQ S+PD F+ + L+ L LY N+L+
Sbjct: 101 QLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 262 LFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELV 321
+FN ++L L LS+N LQ F+ + L+ L L +N+L+ F + L +L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 322 LCSNQL 327
L NQL
Sbjct: 131 LYQNQL 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 243 SLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNE 302
+L +L+L+ N L S+ +F+ +NL EL LS N LQ F+ + L+ L LY N+
Sbjct: 134 NLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 303 LEGGIPKFFGNMCCLNELVLCSN 325
L+ F + L + L N
Sbjct: 193 LKSVPDGVFDRLTSLQYIWLHDN 215
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 211 KLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLV 270
+L++LT LIL G L D L +L+ L L EN L S+ +F+ +NL
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKL-----TNLKELVLVENQL-QSLPDGVFDKLTNLT 136
Query: 271 ELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
L L+ N LQ F+ + +L L L N+L+ F + L +L L NQL
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 286 AFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTG---QLFEFIQNLS-CG 341
A + + +L L L N+L+ F + L ELVL NQL +F+ + NL+
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 342 CAKNSLESL 350
A N L+SL
Sbjct: 140 LAHNQLQSL 148
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 4/152 (2%)
Query: 487 LPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLA 546
LPS ++L+LS N S + L L LS+N L+ + ++ L LDL+
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 547 NNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWI 606
+N+ L +++L L+NN + + ++ L+ + L +N +S P +
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Query: 607 ---GESLPKLIVLSLMSNKFHGIIPFQLCHLP 635
G LPKL++L L SNK + L LP
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 8/175 (4%)
Query: 590 LMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPG 649
L+DL N LS W L L L L N + I +P ++ LDLSSN++
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 650 IIPKCFNNFTAMAQEKSSVLSVTSNYSFISD-GGFP-LVWYDNSYFGQAELT-WKGSQYK 706
+ F++ A+ VL + +N+ + D F + Y Q +++ + K
Sbjct: 103 LDEFLFSDLQAL-----EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 707 YQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKS 761
N L + +LDLSSNKL ++ L + L +N + K+ QL S
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFS 212
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 246 FLDLSENNLTSSVYPW----LFNVSS--------------------NLVELGLSSNLLQG 281
LDLS NNL+ W L N+ S NL L LSSN L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 282 SIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCG 341
F + +L+ L LY+N + F +M L +L L NQ++ E I++ G
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD---G 159
Query: 342 CAKNSLESLDLSANAV 357
L LDLS+N +
Sbjct: 160 NKLPKLMLLDLSSNKL 175
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
LE LDLS+N SV P F+ L L L LQ P F + +LQ L+L N L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 304 EGGIPKFFGNMCCLNELVLCSNQLT 328
+ F ++ L L L N+++
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS 166
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 234 DPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSL 293
DP + L L L L + P LF + L L L N LQ D F + +L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 294 QTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
LFL+ N + + F + L+ L+L N++
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 114/285 (40%), Gaps = 13/285 (4%)
Query: 542 ILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGE 601
+LDL N D S P+++ L L+ N ++ P N L+ + L N L
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-L 94
Query: 602 IPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAM 661
IP + L L L + NK ++ + L ++ L++ N++ I + F+ ++
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 662 AQ---EKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLD 718
Q EK ++ S+ + G L + + ++K L +K+L+
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK--------RLYRLKVLE 206
Query: 719 LSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPS 778
+S + + + L +++++ NLT + L L FL+LS N S
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 779 SLSQLSGLSVMDLSYNNLSGKIPSGTQ-LQSFNASTYAGNELCGL 822
L +L L + L L+ P + L +GN+L L
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
LE L+L+EN + S+V P FN NL LGL SN L+ F + +L L + N++
Sbjct: 58 LEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 304 EGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLS-ANAVTGPIP 362
+ F ++ L L + N L +I + + NSLE L L N + P
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLV-----YISHRAFS-GLNSLEQLTLEKCNLTSIPTE 170
Query: 363 EXXXXXXXXXXXXXXNRLNGTINQSLGRMYKLEKLSL 399
+N + S R+Y+L+ L +
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 32/195 (16%)
Query: 606 IGESLP-KLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQE 664
+ E +P + +L L N+ + + P ++ L+L+ N + + P FNN +
Sbjct: 26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL--- 82
Query: 665 KSSVLSVTSNY-SFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNK 723
L + SN I G F G + LT LD+S NK
Sbjct: 83 --RTLGLRSNRLKLIPLGVFT---------GLSNLT----------------KLDISENK 115
Query: 724 LGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQL 783
+ + DL L ++ + N+L S L SL+ L L + +LS L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 784 SGLSVMDLSYNNLSG 798
GL V+ L + N++
Sbjct: 176 HGLIVLRLRHLNINA 190
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.057, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
LE LDLS+N SV P F+ L L L LQ P F + +LQ L+L N L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 304 EGGIPKFFGNMCCLNELVLCSNQLT 328
+ F ++ L L L N+++
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRIS 165
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 234 DPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSL 293
DP + L L L L + P LF + L L L N LQ D F + +L
Sbjct: 96 DPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 294 QTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
LFL+ N + + F + L+ L+L N++
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSN 301
K+LE L +++N L ++ +F+ NL EL L N L+ P F+ + L L L N
Sbjct: 85 KNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 302 ELEGGIPKFFGNMCCLNELVLCSNQL 327
EL+ F + L EL L +NQL
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQL 169
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 243 SLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNE 302
+L L L N L S+ P +F+ + L L L N LQ F+ + SL+ L LY+N+
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168
Query: 303 LEGGIPKFFGNMCCLNELVLCSNQL 327
L+ F + L L L +NQL
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 108 RKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQL-GNLSNLQYL 166
++L++L L ++DN +PI F ++ LD S+PP++ +L+ L YL
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK---SLPPRVFDSLTKLTYL 138
Query: 167 NLGYNDLLSV 176
+LGYN+L S+
Sbjct: 139 SLGYNELQSL 148
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 225 LPPFFPSADDPLHLNSSK-------------SLEFLDLSENNLTSSVYPWLFNVSSNLVE 271
+P P+ L L S+K L L L++N L ++ +F NL
Sbjct: 31 IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLET 89
Query: 272 LGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
L ++ N LQ F+ +V+L L L N+L+ P+ F ++ L L L N+L
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 235 PLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQ 294
P +S L +L L N L S+ +F+ ++L EL L +N L+ AF+ + L+
Sbjct: 126 PRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 295 TLFLYSNELE 304
TL L +N+L+
Sbjct: 185 TLKLDNNQLK 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 70/186 (37%), Gaps = 16/186 (8%)
Query: 122 DFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDL--LSVGNX 179
D G + + + LDL G A L+ L +LNL YN L LS G
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG-- 77
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXDWPLVVY-KLSSLTTLILEGCDLPPFFPSADDPLHL 238
PL V+ L+ L L L G L D L
Sbjct: 78 -----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-- 130
Query: 239 NSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFL 298
L+ L L+ N L S+ F+ +NL L LS+N LQ AF+ + LQT+ L
Sbjct: 131 ---TKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 299 YSNELE 304
+ N+ +
Sbjct: 187 FGNQFD 192
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 225 LPPFFPSADDPLHLNSS-------------KSLEFLDLSENNLTSSVYPWLFNVSSNLVE 271
+P P+ + L L S+ L +L+L N L ++ +F+ + L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGT 87
Query: 272 LGLSSNLLQGSIP-DAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
LGL++N L S+P F+H+ L L+L N+L+ F + L EL L +NQL
Sbjct: 88 LGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 253 NLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFG 312
N S+ +F+ + L EL L++N LQ AF+ + +LQTL L +N+L+ F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 313 NMCCLNELVLCSNQ 326
+ L + L NQ
Sbjct: 177 RLGKLQTITLFGNQ 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 70/186 (37%), Gaps = 16/186 (8%)
Query: 122 DFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDL--LSVGNX 179
D G + + + LDL G A L+ L +LNL YN L LS G
Sbjct: 20 DCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG-- 77
Query: 180 XXXXXXXXXXXXXXXXXXXXXXXXDWPLVVY-KLSSLTTLILEGCDLPPFFPSADDPLHL 238
PL V+ L+ L L L G L D L
Sbjct: 78 -----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-- 130
Query: 239 NSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFL 298
L+ L L+ N L S+ F+ +NL L LS+N LQ AF+ + LQT+ L
Sbjct: 131 ---TKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Query: 299 YSNELE 304
+ N+ +
Sbjct: 187 FGNQFD 192
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 225 LPPFFPSADDPLHLNSS-------------KSLEFLDLSENNLTSSVYPWLFNVSSNLVE 271
+P P+ + L L S+ L +L+L N L ++ +F+ + L
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGT 87
Query: 272 LGLSSNLLQGSIP-DAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327
LGL++N L S+P F+H+ L L+L N+L+ F + L EL L +NQL
Sbjct: 88 LGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 253 NLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFG 312
N S+ +F+ + L EL L++N LQ AF+ + +LQTL L +N+L+ F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 313 NMCCLNELVLCSNQ 326
+ L + L NQ
Sbjct: 177 RLGKLQTITLFGNQ 190
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 378 NRLNGTINQSLGRMYKLEKLSLGGNSLT--GVISEDFFSNTSNLKNQIDWLDISNTGISD 435
N+L + ++ +L KLSL N L+ G S+ F TS + +LD+S G+
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-----LKYLDLSFNGVIT 92
Query: 436 TIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTY-DISSNHFEGPIPPLPSNASVL 494
++ + L F + + Q+ LSLR Y DIS H
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------------- 137
Query: 495 NLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKI 554
++ F+G + L S+ K+ N+ LPD + L LDL+
Sbjct: 138 --TRVAFNGIFNGLSSLEVLKMA----GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 555 PDSMGSLPNIQILSL-HNN 572
P + SL ++Q+L++ HNN
Sbjct: 192 PTAFNSLSSLQVLNMSHNN 210
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 735 LVGLIAMNLSRNNLTGQITPKI-SQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSY 793
L L + ++ N+ P I ++L++L FLDLS+ + P++ + LS L V+++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 794 NNL 796
NN
Sbjct: 209 NNF 211
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 25/232 (10%)
Query: 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSN--KFHGIIPFQLCHLPFIQILDLSSNNIP 648
++L N L +P + + L +L LSL SN F G ++ LDLS N
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--- 88
Query: 649 GIIPKCFNNFTAMAQ------EKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKG 702
G+I +NF + Q + S++ ++ F+S L++ D S+ + + G
Sbjct: 89 GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN--LIYLDISH-THTRVAFNG 144
Query: 703 SQYKYQNTLGLVKMLDLSSNKLGGE-VPEEIMDLVGLIAMNLSRNNLTGQITP-KISQLK 760
N L +++L ++ N +P+ +L L ++LS+ L Q++P + L
Sbjct: 145 ----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199
Query: 761 SLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNAS 812
SL L++S N FF L+ L V+D S N++ +LQ F +S
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSS 249
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N+ + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 213 SSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVEL 272
+ LT L L+ C+L P+ L LDLS N L S P L L L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS--LPLLGQTLPALTVL 105
Query: 273 GLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLT 328
+S N L A + LQ L+L NEL+ P L +L L +NQLT
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 251 ENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
E N + P F+ L + LS+N + PDAF+ + SL +L LY N++
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLT 575
+ + L N + P + + +L +DL+NN S PD+ L ++ L L+ N++T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 576 GELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLP 635
ELP +L L + L + + L L +LSL NK I L
Sbjct: 94 -ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 636 FIQILDLSSN 645
IQ + L+ N
Sbjct: 153 AIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 251 ENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
E N + P F+ L + LS+N + PDAF+ + SL +L LY N++
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLT 575
+ + L N + P + + +L +DL+NN S PD+ L ++ L L+ N++T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 576 GELPSTL 582
ELP +L
Sbjct: 94 -ELPKSL 99
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N+ + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 213 SSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVEL 272
+ LT L L+ C+L P+ L LDLS N L S P L L L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS--LPLLGQTLPALTVL 105
Query: 273 GLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLT 328
+S N L A + LQ L+L NEL+ P L +L L +NQLT
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 19/207 (9%)
Query: 596 NALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
N G+ PT +SL +L + SNK G F LP ++ LDLS N +
Sbjct: 337 NCKFGQFPTLKLKSLKRL---TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391
Query: 656 NNFTAMAQEK-----SSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNT 710
++F ++ + + V++++SN+ L ++ F + L + S++ +
Sbjct: 392 SDFGTISLKYLDLSFNGVITMSSNF-------LGLEQLEHLDFQHSNLK-QMSEFSVFLS 443
Query: 711 LGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI-SQLKSLDFLDLSR 769
L + LD+S L L + ++ N+ P I ++L++L FLDLS+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 770 NRFFGGIPSSLSQLSGLSVMDLSYNNL 796
+ P++ + LS L V+++S+NN
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLN 453
LE L + GNS D F+ NL +LD+S + P F LS L LN
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLS--SLQVLN 524
Query: 454 LSNNQIKG--KLPDLSLR-FDTYDISSNHF----EGPIPPLPSNASVLNLSKNKFS 502
+S+N P L D S NH + + PS+ + LNL++N F+
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 77/210 (36%), Gaps = 33/210 (15%)
Query: 441 FWDLSRKKLSFLNLSNNQIKG--KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSK 498
F DLSR LSF + G L L L F+ S++F G L+
Sbjct: 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL-----EQLEHLDFQH 429
Query: 499 NKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGK-IPDS 557
+ F +S L+YLD+S+ + L +L +A N+F +PD
Sbjct: 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489
Query: 558 MGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLS 617
L N L +DL + L PT SL L VL+
Sbjct: 490 FTELRN------------------------LTFLDLSQCQLEQLSPTAFN-SLSSLQVLN 524
Query: 618 LMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647
+ N F + F L +Q+LD S N+I
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 709 NTLGLVKMLDLSSNKLGGE-VPEEIMDLVGLIAMNLSRNNLTGQITP-KISQLKSLDFLD 766
N L +++L ++ N +P+ +L L ++LS+ L Q++P + L SL L+
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 524
Query: 767 LSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNAS 812
+S N FF L+ L V+D S N++ +LQ F +S
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQHFPSS 568
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 489 SNASVLNLSKNKFSGSISFLCSISGHKLM-YLDLSNNLLSGRLPDCWLLFDRLGILDLAN 547
++ VL+L+ ++ LC + L+ +LDLS+N L LP L +L ++
Sbjct: 441 ADVRVLHLAHK----DLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 548 NNFSGKIPDSMGSLPNIQILSLHNNRLTGELP-STLQNCLLLKLMDLGRNALSGE--IPT 604
N D + +LP +Q L L NNRL L +C L L++L N+L E I
Sbjct: 496 NALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553
Query: 605 WIGESLPKL 613
+ E LP +
Sbjct: 554 RLAEMLPSV 562
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 489 SNASVLNLSKNKFSGSISFLCSISGHKLM-YLDLSNNLLSGRLPDCWLLFDRLGILDLAN 547
++ VL+L+ ++ LC + L+ +LDLS+N L LP L +L ++
Sbjct: 441 ADVRVLHLAHK----DLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 548 NNFSGKIPDSMGSLPNIQILSLHNNRLTGELP-STLQNCLLLKLMDLGRNALSGE--IPT 604
N D + +LP +Q L L NNRL L +C L L++L N+L E I
Sbjct: 496 NALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553
Query: 605 WIGESLPKL 613
+ E LP +
Sbjct: 554 RLAEMLPSV 562
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 228 FFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA- 286
F S D + N K LE LDLS N++ ++ F NL EL L +N L+ S+PD
Sbjct: 334 FLGSIDSRMFENLDK-LEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390
Query: 287 FEHMVSLQTLFLYSNELEGGIPK 309
F+ + SLQ ++L++N + P+
Sbjct: 391 FDRLTSLQKIWLHTNPWDCSCPR 413
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 135/386 (34%), Gaps = 87/386 (22%)
Query: 484 IPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLD------------LSNNLLSGRLP 531
+P LP++ + ++LS N SI+ L S +L L + NN G
Sbjct: 25 VPELPAHVNYVDLSLN----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--- 77
Query: 532 DCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPST--LQNCLLLK 589
L IL L N F + L N+++L+L L G + S + L+
Sbjct: 78 -----LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 590 LMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGI----------------------- 626
++ L N + P ++ + VL L NK I
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL 192
Query: 627 -------IPFQLCHLPF----IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNY 675
+ ++ C PF I LDLS N + K F F A+A K L ++++Y
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSNSY 250
Query: 676 SFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVK------------------ML 717
+ S G ++ T+KG + T L K L
Sbjct: 251 NMGSSFG------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 718 DLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIP 777
L+ N++ L L+ +NLS+N L + L L+ LDLS N
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 778 SSLSQLSGLSVMDLSYNNLSGKIPSG 803
S L L + L N L +P G
Sbjct: 365 QSFLGLPNLKELALDTNQLKS-VPDG 389
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 596 NALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNI--PGIIPK 653
N G+ PT +SL +L + SNK G F LP ++ LDLS N + G +
Sbjct: 313 NCKFGQFPTLKLKSLKRL---TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 654 CFNNFTAMAQEKSS---VLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNT 710
T++ S V++++SN+ L ++ F + L + S++ +
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNF-------LGLEQLEHLDFQHSNLK-QMSEFSVFLS 419
Query: 711 LGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI-SQLKSLDFLDLSR 769
L + LD+S L L + ++ N+ P I ++L++L FLDLS+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 770 NRFFGGIPSSLSQLSGLSVMDLSYNNL 796
+ P++ + LS L V+++S+NN
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLN 453
LE L + GNS D F+ NL +LD+S + P F LS L LN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLT----FLDLSQCQLEQLSPTAFNSLS--SLQVLN 500
Query: 454 LSNNQIKG--KLPDLSLR-FDTYDISSNHF----EGPIPPLPSNASVLNLSKNKFS 502
+S+N P L D S NH + + PS+ + LNL++N F+
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 28/178 (15%)
Query: 397 LSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSN 456
LS G S G S+ F TS + +LD+S G+ ++ + L F + +
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTS-----LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 457 NQIKGKLPDLSLRFDTY-DISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHK 515
Q+ LSLR Y DIS H ++ F+G + L S+ K
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTH-----------------TRVAFNGIFNGLSSLEVLK 451
Query: 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSL-HNN 572
+ N+ LPD + L LDL+ P + SL ++Q+L++ HNN
Sbjct: 452 MA----GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 77/210 (36%), Gaps = 33/210 (15%)
Query: 441 FWDLSRKKLSFLNLSNNQIKG--KLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSK 498
F DLSR LSF + G L L L F+ S++F G L+
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-----EQLEHLDFQH 405
Query: 499 NKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGK-IPDS 557
+ F +S L+YLD+S+ + L +L +A N+F +PD
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 558 MGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLS 617
L N L +DL + L PT SL L VL+
Sbjct: 466 FTELRN------------------------LTFLDLSQCQLEQLSPTAFN-SLSSLQVLN 500
Query: 618 LMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647
+ N F + F L +Q+LD S N+I
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 38/84 (45%)
Query: 244 LEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNEL 303
LE LDLS+N V P F +L L L LQ P F + +LQ L+L N L
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 304 EGGIPKFFGNMCCLNELVLCSNQL 327
+ F ++ L L L N++
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRI 164
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 80/226 (35%), Gaps = 29/226 (12%)
Query: 545 LANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPT 604
L N S S S N+ IL LH+N L G + LL+ +DL NA +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 605 WIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQE 664
L L L L + P L +Q L L NN+ + F + +
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL--- 154
Query: 665 KSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKL 724
+ F+ P V ++ ++ L ++L L N +
Sbjct: 155 ---------THLFLHGNRIPSV----------------PEHAFRGLHSLDRLL-LHQNHV 188
Query: 725 GGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRN 770
P DL L+ + L NNL+ + L+SL +L L+ N
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 27/196 (13%)
Query: 378 NRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTI 437
N L G + + LE+L L N+ V+ F +L L + G+ +
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT----LHLDRCGLQELG 120
Query: 438 PDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEG-PIPPLPSNASVLNL 496
P F L+ L +L L +N ++ LPD + R D +++ G IP +P +A
Sbjct: 121 PGLFRGLA--ALQYLYLQDNNLQA-LPDNTFR-DLGNLTHLFLHGNRIPSVPEHA----- 171
Query: 497 SKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPD 556
F G H L L L N ++ P + RL L L NN S +
Sbjct: 172 ----FRGL---------HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAE 218
Query: 557 SMGSLPNIQILSLHNN 572
+ L ++Q L L++N
Sbjct: 219 VLVPLRSLQYLRLNDN 234
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 213 SSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVEL 272
+ LT L L+ C+L P+ L LDLS N L S P L L L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS--LPLLGQTLPALTVL 105
Query: 273 GLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLT 328
+S N L A + LQ L+L NEL+ P L +L L +N LT
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N+ + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 213 SSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVEL 272
+ LT L L+ C+L P+ L LDLS N L S P L L L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS--LPLLGQTLPALTVL 105
Query: 273 GLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLT 328
+S N L A + LQ L+L NEL+ P L +L L +NQLT
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 79
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 137
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N+ + L L + L L N++ IPK F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 213 SSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVEL 272
+ LT L L+ C+L P+ L LDLS N L S P L L L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS--LPLLGQTLPALTVL 105
Query: 273 GLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLT 328
+S N L A + LQ L+L NEL+ P L +L L +NQLT
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 485 PPLPSNASVLNLSKN-KFSGSISFLCSISGHKLMYLD---LSNNLLSGRLPDCWLLFDRL 540
P LP + ++L+LS+N ++ S++ L + + LD L+ + G LP L
Sbjct: 28 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP-------VL 80
Query: 541 GILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG 600
G LDL++N +P +LP + +L + NRLT L+ L+ + L N L
Sbjct: 81 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK- 138
Query: 601 EIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCF 655
+P + PKL LSL +N + L L + L L N++ IPK F
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGF 192
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 185/449 (41%), Gaps = 60/449 (13%)
Query: 391 MYKLEKLSLGGNSLTGV-ISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKL 449
+ LE L LG N ++ + + E+F T NLK LD N I L +
Sbjct: 127 LENLESLHLGSNHISSINLPENF--PTQNLK----VLDFQNNAIHYISRKDTNSLEQATN 180
Query: 450 SFLNLSNNQIKGKLPDL-------SLRF---------------------------DTYD- 474
LN + N IKG P SL+F DT D
Sbjct: 181 LSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQ 240
Query: 475 -ISSNHFEGPIPPLPSNASVLNLSKNKFS--GSISFLCSISGHKLMYLDLSNNLLSGRLP 531
++S FEG + +NL K++FS S +F C ++ LDL+ L+G LP
Sbjct: 241 YLTSATFEGLCD---MSVESINLQKHRFSDLSSSTFRCFT---RVQELDLTAAHLNG-LP 293
Query: 532 DCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPST-LQNCLLLKL 590
+ L L L N+F + S P+++ L + N +L + L+ L+
Sbjct: 294 SGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Query: 591 MDLGRNAL-SGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPG 649
+DL + + + + ++L L L+L N+ G+ P +++LD++ ++
Sbjct: 354 LDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHV 413
Query: 650 IIPKC-FNNFTAM-AQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKY 707
P F N + S L TSN ++ G + + N G + S+
Sbjct: 414 KAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLA--GLQDLRHLNLQ-GNSFQDGSISKTNL 470
Query: 708 QNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDL 767
+G +++L LSS L + L + ++LS N+LTG +S LK L +L++
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 768 SRNRFFGGIPSSLSQLSGLSVMDLSYNNL 796
+ N P L LS S+++LS+N L
Sbjct: 530 ASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 110/265 (41%), Gaps = 57/265 (21%)
Query: 267 SNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQ 326
+NL L LSSN + S A + SLQ L SN++ P N+ L L + SN+
Sbjct: 129 TNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 327 LTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTINQ 386
+ ++S +LESL + N ++ P
Sbjct: 185 --------VSDISVLAKLTNLESLIATNNQISDITP------------------------ 212
Query: 387 SLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLS- 445
LG + L++LSL GN L + + +N ++ LD++N IS+ P LS
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTD-------LDLANNQISNLAP-----LSG 259
Query: 446 RKKLSFLNLSNNQIKGKLPDLSLR-FDTYDISSNHFE--GPIPPLPSNASVLNLSKNKFS 502
KL+ L L NQI P L +++ N E PI L N + L L N S
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL-KNLTYLTLYFNNIS 318
Query: 503 GSISFLCSISGHKLMYLDLSNNLLS 527
IS + S++ KL L SNN +S
Sbjct: 319 D-ISPVSSLT--KLQRLFFSNNKVS 340
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 235 PLHL-NSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDA-FEHMVS 292
P HL + ++LE ++ N L + +F L +L L+SN L+ S+PD F+ + S
Sbjct: 162 PSHLFDDLENLESIEFGSNKL-RQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTS 219
Query: 293 LQTLFLYSNELEGGIPKF 310
LQ ++L++N + P+
Sbjct: 220 LQKIWLHTNPWDCSCPRI 237
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 24/189 (12%)
Query: 616 LSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTS-- 673
L+L ++F I +Q LDL++ ++ G+ P + K VLSV
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGL-PSGMKGLNLL---KKLVLSVNHFD 311
Query: 674 NYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQ------NTLGLVKMLDLSSNKLGGE 727
IS FP + + L +G+ K LG ++ LDLS N +
Sbjct: 312 QLCQISAANFPSLTH---------LYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEAS 362
Query: 728 --VPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSS-LSQLS 784
++ +L L +NLS N G + + L+ LDL+ R P S L
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLH 422
Query: 785 GLSVMDLSY 793
L V++L+Y
Sbjct: 423 FLQVLNLTY 431
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 553 KIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSG-EIPTWIGESLP 611
++PD + + N ++L+LH N++ ++ ++ L+++ L RN + EI + G L
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LA 112
Query: 612 KLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSV 671
L L L N+ I +L ++ L L +N I I FN ++ + L
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD---LGE 169
Query: 672 TSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKM--LDLSSNKLGGEVP 729
S+IS+G F + + Y A + + N L+K+ LDLS N L P
Sbjct: 170 LKRLSYISEGAFEGL-SNLRYLNLAMCNLR----EIPNLTPLIKLDELDLSGNHLSAIRP 224
Query: 730 EEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRN 770
L+ L + + ++ + L+SL ++L+ N
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 12/175 (6%)
Query: 615 VLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEK--SSVLSVT 672
+L+L N+ I HL ++IL LS N+I I FN + + + L+
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 673 SNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEI 732
N +F+ +W N+ Y + N + ++ LDL K + E
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESI------PSYAF-NRIPSLRRLDLGELKRLSYISEGA 180
Query: 733 MD-LVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGL 786
+ L L +NL+ NL + P ++ L LD LDLS N P S L L
Sbjct: 181 FEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 88 ALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDN--DFSGIPIADFIGSLSSKLRHLDLG 145
L + GS+ K L PSL +YLDLS N FSG +G+ + LRHLDL
Sbjct: 329 TLTMNKGSISFKKVAL-PSL------SYLDLSRNALSFSGCCSYSDLGT--NSLRHLDLS 379
Query: 146 WAGFAGSVPPQLGNLSNLQYLNLGYNDLLSV 176
+ G A + L LQ+L+ ++ L V
Sbjct: 380 FNG-AIIMSANFMGLEELQHLDFQHSTLKRV 409
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 88 ALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDN--DFSGIPIADFIGSLSSKLRHLDLG 145
L + GS+ K L PSL +YLDLS N FSG +G+ + LRHLDL
Sbjct: 334 TLTMNKGSISFKKVAL-PSL------SYLDLSRNALSFSGCCSYSDLGT--NSLRHLDLS 384
Query: 146 WAGFAGSVPPQLGNLSNLQYLNLGYNDLLSV 176
+ G A + L LQ+L+ ++ L V
Sbjct: 385 FNG-AIIMSANFMGLEELQHLDFQHSTLKRV 414
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 549 NFSGKIPDSMGSLPN-----IQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIP 603
+ SGK S+ S+P Q+L L++NR+T P L +DL N L+ +P
Sbjct: 15 DCSGK---SLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 70
Query: 604 TWIGESLPKLIVLSLMSNKFHGI 626
+ + L +L LSL N+ I
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 267 SNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQ 326
+NL L LSSN + S A + SLQ L SN++ P N+ L L + SN+
Sbjct: 129 TNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 327 LTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTINQ 386
+ ++S +LESL + N ++ P
Sbjct: 185 --------VSDISVLAKLTNLESLIATNNQISDITP------------------------ 212
Query: 387 SLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLS- 445
LG + L++LSL GN L + + +N ++ LD++N IS+ P LS
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTD-------LDLANNQISNLAP-----LSG 259
Query: 446 RKKLSFLNLSNNQIKGKLP 464
KL+ L L NQI P
Sbjct: 260 LTKLTELKLGANQISNISP 278
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 537 FDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLK 589
+D L L L N+ + ++P + +L N+++L L +NRLT LP+ L +C LK
Sbjct: 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 12 VALFSVISLQLAPRVADCSNNTTIRCIDEEREALLSFK---QSLVDEHGFLSSWG--SED 66
A S +S L P++ +N DE +ALL K Q +DE + + +D
Sbjct: 164 TATNSAVSTPLTPKIELFANGK-----DEANQALLQHKKLSQYSIDEDDDIENRMVMPKD 218
Query: 67 NKSDCCEWIGV-----YCRNKTHHVYALDLQDGSLKLKG---TILSPSLRKLQHLTYLDL 118
+K D W + N + +++ D L L G T L ++ L +L LDL
Sbjct: 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFL-TRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 119 SDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDL 173
S N + +P +GS +L++ + ++P + GNL NLQ+L + N L
Sbjct: 278 SHNRLTSLPAE--LGS-CFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 265 VSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCS 324
+ ++ L L++N + P F+H+V+LQ L+ SN+L F + L +L L
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90
Query: 325 NQL 327
N L
Sbjct: 91 NHL 93
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 262 LFNVSSNLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSNELEGGIPKF 310
L N S L+EL S N L+ S+PD F+ + SLQ ++L++N + P+
Sbjct: 272 LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 714 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFF 773
VK LDLS+N++ ++ V L A+ L+ N + S L SL+ LDLS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 774 GGIPSSLSQLSGLSVMDL 791
S LS L+ ++L
Sbjct: 114 NLSSSWFKPLSSLTFLNL 131
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 267 SNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQ 326
+NL L LSSN + S A + SLQ L SN++ P N+ L L + SN+
Sbjct: 129 TNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK 184
Query: 327 LTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTINQ 386
+ ++S +LESL + N ++ P
Sbjct: 185 --------VSDISVLAKLTNLESLIATNNQISDITP------------------------ 212
Query: 387 SLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLS- 445
LG + L++LSL GN L + + +N ++ LD++N IS+ P LS
Sbjct: 213 -LGILTNLDELSLNGNQLKDIGTLASLTNLTD-------LDLANNQISNLAP-----LSG 259
Query: 446 RKKLSFLNLSNNQIKGKLP 464
KL+ L L NQI P
Sbjct: 260 LTKLTELKLGANQISNISP 278
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 53/139 (38%), Gaps = 32/139 (23%)
Query: 637 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQA 696
+Q LDL N I + NF +A ++ + Y+FI D
Sbjct: 146 VQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQYNFIYD---------------- 183
Query: 697 ELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 756
K Q +K LDLSSNKL P E G+ ++L RNN I +
Sbjct: 184 --------VKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISL-RNNKLVLIEKAL 233
Query: 757 SQLKSLDFLDLSRNRFFGG 775
++L+ DL N F G
Sbjct: 234 RFSQNLEHFDLRGNGFHCG 252
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 714 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFF 773
VK LDLS+N++ ++ V L A+ L+ N + S L SL+ LDLS N
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 774 GGIPSSLSQLSGLSVMDL 791
S LS L+ ++L
Sbjct: 88 NLSSSWFKPLSSLTFLNL 105
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 83/220 (37%), Gaps = 25/220 (11%)
Query: 265 VSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCS 324
+ N L L N +Q D F+H+ L+ L L N + F + LN L L
Sbjct: 33 IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD 92
Query: 325 NQLT---GQLFEFIQNLSCGCAKN---------------SLESLDLSANAVTGPIPEXXX 366
N+LT Q FE++ L +N SL LDL I E
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 367 XXXXXXXXXXXNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWL 426
N +L + +LE+L L GN L +I F ++L+ L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRK----L 207
Query: 427 DISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDL 466
+ + ++ + F DL K L LNLS+N + DL
Sbjct: 208 WLMHAQVATIERNAFDDL--KSLEELNLSHNNLMSLPHDL 245
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSN 301
+ LE L LS+N L + FN +L L L N L AFE++ L+ L+L +N
Sbjct: 59 RHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 302 ELEGGIPKFFGN 313
+E IP + N
Sbjct: 118 PIE-SIPSYAFN 128
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 105 PSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQ 164
P+L L L L+LS N I F G S LR L L A A +L +L+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTS--LRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 165 YLNLGYNDLLSV 176
LNL +N+L+S+
Sbjct: 230 ELNLSHNNLMSL 241
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 143/327 (43%), Gaps = 47/327 (14%)
Query: 223 CDLPPFFPSADDPLHLNSSKSLEFLD-LSE----NNLTSSVYPWLFNVSSNLVELGLSSN 277
DL D L + S +E+L+ L++ NN + + P L N++ LV++ +++N
Sbjct: 38 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTK-LVDILMNNN 95
Query: 278 LLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTG-------- 329
+ P ++ +L L L++N++ P N+ LN L L SN ++
Sbjct: 96 QIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLT 151
Query: 330 --QLFEF---IQNLSCGCAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTI 384
Q F + +L +LE LD+S+N V+ I N+++
Sbjct: 152 SLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDIT 210
Query: 385 NQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDL 444
LG + L++LSL GN L + + +N ++ LD++N IS+ P L
Sbjct: 211 --PLGILTNLDELSLNGNQLKDIGTLASLTNLTD-------LDLANNQISNLAP-----L 256
Query: 445 S-RKKLSFLNLSNNQIKGKLPDLSLR-FDTYDISSNHFE--GPIPPLPSNASVLNLSKNK 500
S KL+ L L NQI P L +++ N E PI L N + L L N
Sbjct: 257 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL-KNLTYLTLYFNN 315
Query: 501 FSGSISFLCSISGHKLMYLDLSNNLLS 527
S IS + S++ KL L SNN +S
Sbjct: 316 IS-DISPVSSLT--KLQRLFFSNNKVS 339
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 267 SNLVELGLSSNLLQGSIPDA-FEHMVSLQTLFLYSNELEGGIPK 309
++L EL L +N L+ S+PD F+ + SLQ ++L++N + P+
Sbjct: 323 THLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 365
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 48/210 (22%)
Query: 455 SNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSG----------- 503
++N + LPDL + ++ N+ +P LP + + L++S+N FSG
Sbjct: 244 ADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYL 302
Query: 504 -----SISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPD-- 556
I LC + L L++SNN L LP +RL +A+ N ++P+
Sbjct: 303 NASSNEIRSLCDLPP-SLEELNVSNNKL-IELPALPPRLERL----IASFNHLAEVPELP 356
Query: 557 -----------SMGSLPNI--QILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIP 603
+ P+I + L N E+P QN LK + + N L E P
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFP 412
Query: 604 TWIGESLPKLIVLSLMSNKFHGIIPFQLCH 633
I ES V L N + P++ H
Sbjct: 413 D-IPES-----VEDLRMNSERVVDPYEFAH 436
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSN 301
+ LE L LS+N L + FN +L L L N L AFE++ L+ L+L +N
Sbjct: 59 RHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 302 ELEGGIPKFFGN 313
+E IP + N
Sbjct: 118 PIE-SIPSYAFN 128
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 105 PSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQ 164
P+L L L L+LS N I F G S LR L L A A +L +L+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTS--LRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 165 YLNLGYNDLLSV 176
LNL +N+L+S+
Sbjct: 230 ELNLSHNNLMSL 241
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 25/125 (20%)
Query: 518 YLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGE 577
YL+L N + D + L IL L+ N + LP++ L L +NRLT
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT- 97
Query: 578 LPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFI 637
+PT E L KL L L +N I + +P +
Sbjct: 98 ------------------------VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 638 QILDL 642
+ LDL
Sbjct: 134 RRLDL 138
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 549 NFSGKIPDSMGSLPN-----IQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIP 603
+ SGK S+ S+P Q+L L++N++T P L +DL N L+ +P
Sbjct: 15 DCSGK---SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 70
Query: 604 TWIGESLPKLIVLSLMSNKFHGI 626
+ + L +L LSL N+ I
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 247 LDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGG 306
L L+ N T +F L ++ S+N + AFE + + L SN LE
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 307 IPKFFGNMCCLNELVLCSNQLT 328
K F + L L+L SN++T
Sbjct: 97 QHKMFKGLESLKTLMLRSNRIT 118
>pdb|3S4E|A Chain A, Crystal Structrue Of A Novel Mitogen-Activated Protein
Kinase Phosphatase, Skrp1
Length = 144
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 637 IQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSN 674
I ILDL NI P+CF F A+ K V+ V SN
Sbjct: 53 ISILDLPETNILSYFPECF-EFIEEAKRKDGVVLVHSN 89
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 549 NFSGKIPDSMGSLPN-----IQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIP 603
+ SGK S+ S+P Q+L L++N++T P L +DL N L+ +P
Sbjct: 23 DCSGK---SLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP 78
Query: 604 TWIGESLPKLIVLSLMSNKFHGI 626
+ + L +L LSL N+ I
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSI 101
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 141/316 (44%), Gaps = 47/316 (14%)
Query: 234 DPLHLNSSKSLEFLD-LSE----NNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFE 288
D L + S +E+L+ L++ NN + + P L N++ LV++ +++N + P
Sbjct: 53 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTK-LVDILMNNNQIADITP--LA 108
Query: 289 HMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTG----QLFEFIQNLSCG--- 341
++ +L L L++N++ P N+ LN L L SN ++ +Q LS G
Sbjct: 109 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 166
Query: 342 ------CAKNSLESLDLSANAVTGPIPEXXXXXXXXXXXXXXNRLNGTINQSLGRMYKLE 395
+LE LD+S+N V+ I N+++ LG + L+
Sbjct: 167 TDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDIT--PLGILTNLD 223
Query: 396 KLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLS-RKKLSFLNL 454
+LSL GN L + + +N ++ LD++N IS+ P LS KL+ L L
Sbjct: 224 ELSLNGNQLKDIGTLASLTNLTD-------LDLANNQISNLAP-----LSGLTKLTELKL 271
Query: 455 SNNQIKGKLPDLSLR-FDTYDISSNHFE--GPIPPLPSNASVLNLSKNKFSGSISFLCSI 511
NQI P L +++ N E PI L N + L L N S IS + S+
Sbjct: 272 GANQISNISPLAGLTALTNLELNENQLEDISPISNL-KNLTYLTLYFNNIS-DISPVSSL 329
Query: 512 SGHKLMYLDLSNNLLS 527
+ KL L +NN +S
Sbjct: 330 T--KLQRLFFANNKVS 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,170,908
Number of Sequences: 62578
Number of extensions: 1095054
Number of successful extensions: 3134
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2142
Number of HSP's gapped (non-prelim): 668
length of query: 913
length of database: 14,973,337
effective HSP length: 108
effective length of query: 805
effective length of database: 8,214,913
effective search space: 6613004965
effective search space used: 6613004965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)