Query 002514
Match_columns 913
No_of_seqs 871 out of 5350
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 01:30:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.8E-70 1.7E-74 680.8 52.4 582 38-823 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.9E-56 1.1E-60 556.3 41.3 444 242-821 140-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.9E-39 4.1E-44 327.3 -14.3 263 87-405 48-310 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 5.9E-38 1.3E-42 316.6 -7.0 481 159-802 43-544 (565)
5 KOG4194 Membrane glycoprotein 100.0 4.7E-35 1E-39 308.3 9.4 368 269-769 80-448 (873)
6 KOG4194 Membrane glycoprotein 100.0 3E-35 6.6E-40 309.7 7.3 369 316-796 79-451 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-34 3E-39 321.2 -1.7 416 242-795 68-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.5E-34 1.4E-38 315.9 -4.6 440 242-817 45-486 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.6E-33 7.8E-38 295.4 -2.2 390 270-802 10-409 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.2E-32 6.8E-37 288.3 -2.4 253 108-405 4-258 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.1E-24 2.3E-29 220.9 -4.6 428 265-794 65-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 6E-21 1.3E-25 239.4 26.5 347 284-771 551-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 9.4E-22 2E-26 228.0 16.1 223 488-802 241-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 1E-21 2.3E-26 227.6 16.4 268 421-783 201-468 (788)
15 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.4E-25 237.0 26.0 342 241-647 557-905 (1153)
16 KOG4237 Extracellular matrix p 99.8 4.6E-22 1E-26 201.9 -2.7 288 84-407 67-361 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.9E-19 4.2E-24 210.5 11.3 53 715-773 349-401 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4E-19 8.6E-24 207.9 12.4 265 448-800 179-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5E-18 1.1E-22 185.5 3.2 235 514-798 23-292 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-17 4.8E-22 180.4 6.4 84 116-200 3-94 (319)
21 KOG0617 Ras suppressor protein 99.6 6E-18 1.3E-22 152.5 -3.3 182 560-801 31-216 (264)
22 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.6E-22 149.7 -3.6 184 537-780 32-219 (264)
23 PLN03150 hypothetical protein; 99.6 5.5E-15 1.2E-19 173.1 10.9 117 713-829 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 3.5E-12 7.6E-17 149.6 13.1 128 36-174 368-503 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 3.7E-13 8E-18 143.9 -2.6 193 515-771 76-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 2.8E-13 6E-18 144.8 -4.1 159 492-661 78-236 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.1E-11 4.6E-16 137.1 7.8 123 518-646 97-220 (394)
28 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.6E-16 136.3 7.4 198 542-802 97-295 (394)
29 KOG3207 Beta-tubulin folding c 99.2 6.7E-12 1.4E-16 130.6 1.4 217 159-381 119-339 (505)
30 KOG1909 Ran GTPase-activating 99.0 2.8E-11 6E-16 122.8 -0.1 140 84-225 30-197 (382)
31 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 117.1 2.2 205 530-799 206-414 (490)
32 KOG1259 Nischarin, modulator o 99.0 1.9E-10 4.1E-15 113.7 2.8 131 514-651 284-415 (490)
33 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 121.5 0.5 133 514-647 121-258 (505)
34 KOG1909 Ran GTPase-activating 99.0 1.2E-10 2.6E-15 118.2 0.3 256 104-404 23-310 (382)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 105.1 4.9 80 515-599 20-101 (175)
36 PF14580 LRR_9: Leucine-rich r 98.8 5.5E-09 1.2E-13 100.2 5.9 112 534-650 15-128 (175)
37 PF13855 LRR_8: Leucine rich r 98.7 6.7E-09 1.5E-13 81.7 3.2 60 737-796 2-61 (61)
38 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4.1E-14 121.3 -0.0 85 714-801 234-322 (414)
39 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.8E-14 121.6 -1.0 216 514-797 72-290 (414)
40 KOG2120 SCF ubiquitin ligase, 98.7 8.2E-10 1.8E-14 109.4 -3.2 19 73-93 127-145 (419)
41 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 80.7 3.3 61 712-772 1-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.1E-08 2.5E-13 122.5 5.2 251 112-382 546-808 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.7 1.2E-08 2.5E-13 122.5 4.4 109 107-220 567-675 (889)
44 PF08263 LRRNT_2: Leucine rich 98.6 4.5E-08 9.7E-13 70.2 4.4 40 39-80 2-43 (43)
45 KOG2120 SCF ubiquitin ligase, 98.4 8.5E-09 1.8E-13 102.3 -4.4 183 112-326 186-374 (419)
46 KOG2982 Uncharacterized conser 98.4 1.3E-07 2.7E-12 94.2 1.9 221 156-406 40-263 (418)
47 KOG4579 Leucine-rich repeat (L 98.3 3.1E-08 6.8E-13 87.1 -2.9 86 715-803 80-165 (177)
48 KOG1859 Leucine-rich repeat pr 98.2 8.5E-08 1.8E-12 106.2 -4.6 82 514-599 209-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.5E-12 105.1 -5.1 202 139-381 86-292 (1096)
50 KOG2982 Uncharacterized conser 98.1 9E-07 1.9E-11 88.3 1.5 86 313-404 69-158 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 3.7E-07 8.1E-12 80.5 -1.7 90 514-607 53-143 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 1.6E-06 3.4E-11 85.4 1.4 89 84-174 30-133 (388)
53 COG5238 RNA1 Ran GTPase-activa 98.0 2.1E-06 4.7E-11 84.5 0.9 93 106-199 25-132 (388)
54 KOG4341 F-box protein containi 97.8 9.7E-07 2.1E-11 92.3 -4.2 319 73-403 101-437 (483)
55 PRK15386 type III secretion pr 97.8 7.1E-05 1.5E-09 80.9 9.1 76 558-647 48-124 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 6.6E-06 1.4E-10 96.6 0.9 152 138-298 123-282 (699)
57 PRK15386 type III secretion pr 97.8 8.5E-05 1.8E-09 80.3 9.0 141 106-278 47-188 (426)
58 PF12799 LRR_4: Leucine Rich r 97.6 3.6E-05 7.8E-10 55.2 2.6 35 738-773 3-37 (44)
59 PF12799 LRR_4: Leucine Rich r 97.6 6.1E-05 1.3E-09 54.0 3.2 37 713-750 2-38 (44)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.4E-10 90.2 2.0 160 111-276 122-284 (699)
61 KOG4341 F-box protein containi 97.4 1.5E-05 3.3E-10 83.6 -2.6 309 84-399 138-459 (483)
62 KOG1644 U2-associated snRNP A' 97.3 0.00036 7.8E-09 66.5 5.9 57 269-327 44-100 (233)
63 KOG1644 U2-associated snRNP A' 97.3 0.00016 3.5E-09 68.7 3.6 82 113-199 44-125 (233)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.1E-09 71.4 2.1 110 105-219 37-149 (260)
65 PF13306 LRR_5: Leucine rich r 96.8 0.0037 7.9E-08 57.6 7.4 121 533-660 7-127 (129)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0029 6.3E-08 58.3 6.6 121 511-638 9-129 (129)
67 KOG2739 Leucine-rich acidic nu 96.7 0.0017 3.6E-08 64.9 3.9 90 158-255 40-129 (260)
68 KOG2123 Uncharacterized conser 96.3 0.00024 5.1E-09 70.8 -4.5 103 139-248 21-123 (388)
69 KOG2123 Uncharacterized conser 95.8 0.00048 1E-08 68.6 -4.7 103 110-219 18-123 (388)
70 PF00560 LRR_1: Leucine Rich R 95.6 0.0046 9.9E-08 36.8 0.6 18 762-780 2-19 (22)
71 KOG1947 Leucine rich repeat pr 95.4 0.0051 1.1E-07 71.3 0.7 118 185-303 186-307 (482)
72 KOG1947 Leucine rich repeat pr 95.4 0.0067 1.4E-07 70.3 1.7 137 159-299 186-329 (482)
73 KOG4308 LRR-containing protein 95.3 9.3E-05 2E-09 83.3 -13.6 66 370-436 378-447 (478)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.0089 1.9E-07 35.6 0.9 19 738-757 2-20 (22)
75 KOG4308 LRR-containing protein 92.9 0.0021 4.6E-08 72.5 -9.0 193 188-406 88-304 (478)
76 PF13504 LRR_7: Leucine rich r 90.7 0.15 3.3E-06 28.1 1.2 13 162-174 2-14 (17)
77 KOG0473 Leucine-rich repeat pr 89.8 0.021 4.5E-07 55.8 -4.5 83 712-797 42-124 (326)
78 KOG0473 Leucine-rich repeat pr 87.5 0.059 1.3E-06 52.8 -3.1 58 715-774 68-125 (326)
79 smart00369 LRR_TYP Leucine-ric 86.8 0.62 1.3E-05 28.9 2.3 21 586-607 2-22 (26)
80 smart00370 LRR Leucine-rich re 86.8 0.62 1.3E-05 28.9 2.3 21 586-607 2-22 (26)
81 smart00370 LRR Leucine-rich re 83.6 0.85 1.8E-05 28.2 1.8 14 760-773 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 83.6 0.85 1.8E-05 28.2 1.8 14 760-773 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 82.3 0.24 5.1E-06 30.1 -1.1 14 761-774 3-16 (24)
84 PF13516 LRR_6: Leucine Rich r 79.2 0.71 1.5E-05 28.0 0.3 19 713-731 3-21 (24)
85 KOG3864 Uncharacterized conser 78.1 0.43 9.3E-06 46.2 -1.4 81 564-644 103-185 (221)
86 KOG3864 Uncharacterized conser 75.5 0.72 1.6E-05 44.7 -0.6 36 367-402 150-186 (221)
87 smart00365 LRR_SD22 Leucine-ri 70.8 3.9 8.4E-05 25.4 2.0 14 161-174 2-15 (26)
88 PF04478 Mid2: Mid2 like cell 65.0 4.8 0.00011 37.0 2.3 9 886-894 80-88 (154)
89 smart00368 LRR_RI Leucine rich 58.8 7.3 0.00016 24.6 1.7 14 760-773 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 56.5 51 0.0011 36.7 8.4 112 292-405 355-481 (553)
91 KOG4242 Predicted myosin-I-bin 55.8 65 0.0014 35.9 9.0 33 514-546 354-388 (553)
92 smart00364 LRR_BAC Leucine-ric 53.9 9.2 0.0002 23.7 1.4 17 162-178 3-19 (26)
93 KOG3763 mRNA export factor TAP 53.7 4.8 0.00011 45.2 0.4 66 186-256 217-284 (585)
94 PF01102 Glycophorin_A: Glycop 43.6 17 0.00036 32.6 2.1 25 855-879 64-88 (122)
95 PF07172 GRP: Glycine rich pro 36.6 30 0.00065 29.6 2.5 22 1-22 1-23 (95)
96 PTZ00382 Variant-specific surf 34.8 14 0.0003 31.7 0.2 22 857-878 68-89 (96)
97 PF02439 Adeno_E3_CR2: Adenovi 33.9 43 0.00093 22.9 2.3 13 856-868 8-20 (38)
98 TIGR00864 PCC polycystin catio 31.8 26 0.00056 47.7 1.9 32 742-773 1-32 (2740)
99 KOG3763 mRNA export factor TAP 28.4 34 0.00074 38.8 1.9 37 366-402 216-254 (585)
100 KOG1665 AFH1-interacting prote 26.8 57 0.0012 32.1 2.8 11 215-225 198-208 (302)
101 PF08693 SKG6: Transmembrane a 22.2 63 0.0014 22.6 1.5 9 858-866 15-23 (40)
102 smart00367 LRR_CC Leucine-rich 21.7 63 0.0014 19.8 1.4 12 161-172 2-13 (26)
103 TIGR00864 PCC polycystin catio 20.8 52 0.0011 45.0 1.8 33 718-750 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.8e-70 Score=680.76 Aligned_cols=582 Identities=37% Similarity=0.540 Sum_probs=433.1
Q ss_pred CHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCcccceeecCCCCcEEEEEcCCCCCCCcceecCccccCCCCCCEEe
Q 002514 38 IDEEREALLSFKQSLVDEHGFLSSWGSEDNKSDCCEWIGVYCRNKTHHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLD 117 (913)
Q Consensus 38 ~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~l~g~~~~~~l~~l~~L~~L~ 117 (913)
.++|++||++||+++.+|.+.+.+|. .+.+||.|.||+|+. .++|+.|||++ ..+.|.+ ++.+..+++|++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~--~~i~~~~-~~~~~~l~~L~~L~ 99 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG--KNISGKI-SSAIFRLPYIQTIN 99 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC--CCccccC-ChHHhCCCCCCEEE
Confidence 45899999999999988888889997 467899999999975 57999999998 4455666 78899999999999
Q ss_pred CCCCCCCCCCccchHH-hhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCC
Q 002514 118 LSDNDFSGIPIADFIG-SLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGH 196 (913)
Q Consensus 118 Ls~n~i~~~~~~~~~~-~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~ 196 (913)
|++|.+.+. +|..+. .+++ |++|+|++|.+.+.+|. +.+++|++|+|++|.+..
T Consensus 100 Ls~n~~~~~-ip~~~~~~l~~-L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~--------------------- 154 (968)
T PLN00113 100 LSNNQLSGP-IPDDIFTTSSS-LRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG--------------------- 154 (968)
T ss_pred CCCCccCCc-CChHHhccCCC-CCEEECcCCccccccCc--cccCCCCEEECcCCcccc---------------------
Confidence 999998864 666555 6777 99999999988887775 457777777777776641
Q ss_pred ccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhHHhccCCCcEEEccC
Q 002514 197 NNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSS 276 (913)
Q Consensus 197 n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~ 276 (913)
.++..++++++|++|++++|.+.+..|. .+.+ +++|++|++++|.+.+.+|..+..+.. |++|++++
T Consensus 155 -------~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~ 221 (968)
T PLN00113 155 -------EIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTN-LTSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGY 221 (968)
T ss_pred -------cCChHHhcCCCCCEEECccCcccccCCh----hhhh-CcCCCeeeccCCCCcCcCChHHcCcCC-ccEEECcC
Confidence 1223333444444444444443333321 1122 255555555555555555554444433 55566665
Q ss_pred CccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCc
Q 002514 277 NLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANA 356 (913)
Q Consensus 277 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~ 356 (913)
|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+..+. +|++|++++|.
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~Ls~n~ 295 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ------KLISLDLSDNS 295 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc------CcCEEECcCCe
Confidence 555555555566666666666666666555565566666666666666665555555555554 55555555555
Q ss_pred CccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCccccChhhhhccccccccccEEEcccccCCC
Q 002514 357 VTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISD 435 (913)
Q Consensus 357 l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~ 435 (913)
+.+.+|. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------------------- 350 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------------------- 350 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh-------------------------
Confidence 5555554 55555555555555555555555555555555555555544433222
Q ss_pred CCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCcCccccchhccccCCc
Q 002514 436 TIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHK 515 (913)
Q Consensus 436 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 515 (913)
.+..+ ++
T Consensus 351 ----~l~~~---------------------------------------------------------------------~~ 357 (968)
T PLN00113 351 ----NLGKH---------------------------------------------------------------------NN 357 (968)
T ss_pred ----HHhCC---------------------------------------------------------------------CC
Confidence 11111 45
Q ss_pred eeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcC
Q 002514 516 LMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGR 595 (913)
Q Consensus 516 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 595 (913)
|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+.+++.|+.|++++
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 66777777777777777777778888888888888888888888888888888888888888888888888888888888
Q ss_pred CccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhcccccccccccc
Q 002514 596 NALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNY 675 (913)
Q Consensus 596 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~ 675 (913)
|++++.+|..+. .+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.++++|
T Consensus 438 N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------- 501 (968)
T PLN00113 438 NNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------- 501 (968)
T ss_pred CcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc--------------
Confidence 888888887776 58889999999999888888765 45889999999999999999888777666
Q ss_pred ccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcc
Q 002514 676 SFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPK 755 (913)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 755 (913)
+.|+|++|++++.+|..++++++|++|+|++|.++|.+|..
T Consensus 502 ---------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 502 ---------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ---------------------------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 88999999999999999999999999999999999999999
Q ss_pred cccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCcccccCCCCCCCCccccCCCCCC-CCCCCC
Q 002514 756 ISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGN-ELCGLP 823 (913)
Q Consensus 756 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~g~iP~~~~~~~~~~~~~~gn-~lcg~~ 823 (913)
|+.+++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..+++.++...+|.|| .+||.+
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.9e-56 Score=556.27 Aligned_cols=444 Identities=38% Similarity=0.558 Sum_probs=345.2
Q ss_pred CcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeE
Q 002514 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELV 321 (913)
Q Consensus 242 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 321 (913)
++|++|++++|.+++.+|..+..+.. |++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCC-CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 55666666666666555555555444 66666666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEee
Q 002514 322 LCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLG 400 (913)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 400 (913)
+++|.+++.+|..+..++ +|++|++++|.+.+.+|. ++++++|++|++++|.+.+.+|..+..+++|+.|+++
T Consensus 219 L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLT------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccCCcCChhHhcCC------CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc
Confidence 666666666666666555 666666666666655555 6666666666666666666666666666666666666
Q ss_pred CCCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCcc
Q 002514 401 GNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHF 480 (913)
Q Consensus 401 ~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l 480 (913)
+|.+.+.+|. ++..+. +|++|++++|.+.+.+|...
T Consensus 293 ~n~l~~~~p~-----------------------------~~~~l~--~L~~L~l~~n~~~~~~~~~~------------- 328 (968)
T PLN00113 293 DNSLSGEIPE-----------------------------LVIQLQ--NLEILHLFSNNFTGKIPVAL------------- 328 (968)
T ss_pred CCeeccCCCh-----------------------------hHcCCC--CCcEEECCCCccCCcCChhH-------------
Confidence 6655544433 222222 45555555555543333110
Q ss_pred ccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCC
Q 002514 481 EGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGS 560 (913)
Q Consensus 481 ~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 560 (913)
..+++|+.|++++|.+++.+|..++.+++|+.|++++|++.+.+|..+..
T Consensus 329 ------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 329 ------------------------------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred ------------------------------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 00167888999999999899999999999999999999999999999999
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEE
Q 002514 561 LPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQIL 640 (913)
Q Consensus 561 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 640 (913)
+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 99999999999999999999999999999999999999999998877 79999999999999999999999999999999
Q ss_pred eCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcc
Q 002514 641 DLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLS 720 (913)
Q Consensus 641 ~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 720 (913)
++++|++.+.+|..+. . +.|+.|||+
T Consensus 458 ~L~~n~~~~~~p~~~~-~-----------------------------------------------------~~L~~L~ls 483 (968)
T PLN00113 458 SLARNKFFGGLPDSFG-S-----------------------------------------------------KRLENLDLS 483 (968)
T ss_pred ECcCceeeeecCcccc-c-----------------------------------------------------ccceEEECc
Confidence 9999999988886542 1 234899999
Q ss_pred cCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCcccccC
Q 002514 721 SNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKI 800 (913)
Q Consensus 721 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~g~i 800 (913)
+|++++.+|..+.++++|+.|+|++|++++.+|..++++++|+.|+|++|+++|.+|..+..+++|+.||+++|+++|.+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCccccCCCCCCCCCC
Q 002514 801 PSG-TQLQSFNASTYAGNELCG 821 (913)
Q Consensus 801 P~~-~~~~~~~~~~~~gn~lcg 821 (913)
|.. ..+..+....+.+|.+.|
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ChhHhcCcccCEEeccCCccee
Confidence 974 334445555677776654
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-39 Score=327.30 Aligned_cols=263 Identities=30% Similarity=0.403 Sum_probs=193.4
Q ss_pred EEEEcCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEE
Q 002514 87 YALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYL 166 (913)
Q Consensus 87 ~~L~L~~~~~~l~g~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 166 (913)
..++++.|... .+ .+.+.++..|.+|++++|++.. .|+.++.+.. ++.|+.++|.++ ++|+.++.+.+|++|
T Consensus 48 ~~lils~N~l~---~l-~~dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~-l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 48 QKLILSHNDLE---VL-REDLKNLACLTVLNVHDNKLSQ--LPAAIGELEA-LKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred hhhhhccCchh---hc-cHhhhcccceeEEEeccchhhh--CCHHHHHHHH-HHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 45666654332 22 6677778888888888888776 6777888877 888888888777 777778888888888
Q ss_pred ECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccE
Q 002514 167 NLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEF 246 (913)
Q Consensus 167 ~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 246 (913)
+.++|.+.+++.. ++.+..|+.++..+|+++. ..+ .++.+ .+|..
T Consensus 120 ~~s~n~~~el~~~---i~~~~~l~dl~~~~N~i~s--------------------------lp~-----~~~~~-~~l~~ 164 (565)
T KOG0472|consen 120 DCSSNELKELPDS---IGRLLDLEDLDATNNQISS--------------------------LPE-----DMVNL-SKLSK 164 (565)
T ss_pred hccccceeecCch---HHHHhhhhhhhcccccccc--------------------------Cch-----HHHHH-HHHHH
Confidence 8888777655443 4444555555555555543 322 33333 67777
Q ss_pred EECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCC
Q 002514 247 LDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQ 326 (913)
Q Consensus 247 L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 326 (913)
+++.+|++. ..|+...++.. |++||...|.+. .+|+.++.+.+|..|++..|++. ..| .|..+..|+++.++.|.
T Consensus 165 l~~~~n~l~-~l~~~~i~m~~-L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 165 LDLEGNKLK-ALPENHIAMKR-LKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred hhccccchh-hCCHHHHHHHH-HHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence 777778777 45555555555 888888888776 67888889999999999999887 566 68888999999999888
Q ss_pred CCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCCCCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCc
Q 002514 327 LTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLT 405 (913)
Q Consensus 327 l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 405 (913)
+.-...+...++. ++..||+.+|++...+..+.-+.+|+.||+++|.++ ..|.+++++ .|+.|.+.+|++.
T Consensus 240 i~~lpae~~~~L~------~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 240 IEMLPAEHLKHLN------SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHhhHHHHhcccc------cceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 8755555555776 899999999998855555777888999999999998 567788888 8999999999876
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.9e-38 Score=316.56 Aligned_cols=481 Identities=27% Similarity=0.379 Sum_probs=312.6
Q ss_pred CCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccc
Q 002514 159 NLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHL 238 (913)
Q Consensus 159 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 238 (913)
.-.-|+.|++++|.+..+. +.+.++..|..|++.+|++.. .|.+++.+
T Consensus 43 ~qv~l~~lils~N~l~~l~---~dl~nL~~l~vl~~~~n~l~~---lp~aig~l-------------------------- 90 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLR---EDLKNLACLTVLNVHDNKLSQ---LPAAIGEL-------------------------- 90 (565)
T ss_pred hhcchhhhhhccCchhhcc---HhhhcccceeEEEeccchhhh---CCHHHHHH--------------------------
Confidence 3455667777777665332 235555556666666555543 23333333
Q ss_pred cCCCcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccc
Q 002514 239 NSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLN 318 (913)
Q Consensus 239 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 318 (913)
..++.++.++|++. .+|+.+..... ++.+++++|.+. .+|+.++.+..++.++..+|++. ..|..+.++.+|.
T Consensus 91 ---~~l~~l~vs~n~ls-~lp~~i~s~~~-l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 91 ---EALKSLNVSHNKLS-ELPEQIGSLIS-LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLS 163 (565)
T ss_pred ---HHHHHhhcccchHh-hccHHHhhhhh-hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHH
Confidence 55566666666665 56666666665 677777777766 45566667777777777777776 5666666777777
Q ss_pred eeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCCCCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEE
Q 002514 319 ELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLS 398 (913)
Q Consensus 319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 398 (913)
.+++.+|++....|..+. +. .|++||...|.+...+|.++.+.+|.-|++..|++. ..| .|..+..|++++
T Consensus 164 ~l~~~~n~l~~l~~~~i~-m~------~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIA-MK------RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELH 234 (565)
T ss_pred HhhccccchhhCCHHHHH-HH------HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHH
Confidence 777777777655555444 55 677777777776655555777777777777777776 455 677777777777
Q ss_pred eeCCCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCC
Q 002514 399 LGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSN 478 (913)
Q Consensus 399 L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n 478 (913)
++.|.+. .+|.+...++.. +..||+++|+++ ..|+.+..+. +|.+||+++|.+++-.++++.
T Consensus 235 ~g~N~i~-~lpae~~~~L~~----l~vLDLRdNklk-e~Pde~clLr--sL~rLDlSNN~is~Lp~sLgn---------- 296 (565)
T KOG0472|consen 235 VGENQIE-MLPAEHLKHLNS----LLVLDLRDNKLK-EVPDEICLLR--SLERLDLSNNDISSLPYSLGN---------- 296 (565)
T ss_pred hcccHHH-hhHHHHhccccc----ceeeeccccccc-cCchHHHHhh--hhhhhcccCCccccCCccccc----------
Confidence 7777765 455554444443 444555555555 2344444332 455555555555532222111
Q ss_pred ccccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCC---CcEEe-------CCCC
Q 002514 479 HFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDR---LGILD-------LANN 548 (913)
Q Consensus 479 ~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~-------Ls~N 548 (913)
-.|+.|.+.+|.+... ...+-+... |++|. ++.-
T Consensus 297 -----------------------------------lhL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 297 -----------------------------------LHLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred -----------------------------------ceeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 1355555556554321 111111000 11111 1111
Q ss_pred c---CC-cc-CC---CCCCCCCCCCEEEcccCcccccCChhhhcCCC---CCEEECcCCccccccchhHhhcCCCcceEe
Q 002514 549 N---FS-GK-IP---DSMGSLPNIQILSLHNNRLTGELPSTLQNCLL---LKLMDLGRNALSGEIPTWIGESLPKLIVLS 617 (913)
Q Consensus 549 ~---l~-~~-~p---~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 617 (913)
. -+ .. .+ .......+.+.|++++-+++ .+|.....-.. ....+++.|++. ++|..+.. +..+.+.-
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l 417 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDL 417 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH-HHHHHHHH
Confidence 0 00 00 11 12234567889999999998 56654433333 778999999998 89988763 55555444
Q ss_pred ccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccce
Q 002514 618 LMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAE 697 (913)
Q Consensus 618 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (913)
+..|+..+.+|..++.+++|..|+|++|.+- .+|..++.+..|
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L------------------------------------ 460 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL------------------------------------ 460 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh------------------------------------
Confidence 4444444578889999999999999999886 677777766555
Q ss_pred eeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCC
Q 002514 698 LTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIP 777 (913)
Q Consensus 698 ~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip 777 (913)
+.||+|.|+|. .+|..+..+..++.+-.++|++....|..+.++.+|..|||.+|.+. .||
T Consensus 461 -----------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IP 521 (565)
T KOG0472|consen 461 -----------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIP 521 (565)
T ss_pred -----------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCC
Confidence 88999999998 88999998888888888889999887888999999999999999998 899
Q ss_pred ccccCCCCCCeEECCCCcccccCCC
Q 002514 778 SSLSQLSGLSVMDLSYNNLSGKIPS 802 (913)
Q Consensus 778 ~~l~~l~~L~~L~ls~N~L~g~iP~ 802 (913)
..++++++|++|++++|++. .|.
T Consensus 522 p~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 522 PILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred hhhccccceeEEEecCCccC--CCH
Confidence 99999999999999999998 453
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-35 Score=308.31 Aligned_cols=368 Identities=24% Similarity=0.250 Sum_probs=261.9
Q ss_pred CcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCCCCCchhHhhhhccCCCCCCCcc
Q 002514 269 LVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLE 348 (913)
Q Consensus 269 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~ 348 (913)
-+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|..-+...+|+.|+|.+|.++..-.+.+..++ .|+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~------alr 152 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP------ALR 152 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHh------hhh
Confidence 567899999888877888889999999999999888 6787666677799999999998888888888877 899
Q ss_pred EEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCccccChhhhhccccccccccEEE
Q 002514 349 SLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLD 427 (913)
Q Consensus 349 ~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~ 427 (913)
.|||+.|.++..... +..-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++ .+|...|..++
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~---------- 221 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLP---------- 221 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcc----------
Confidence 999999988854433 777778899999999888777777888888888888888877 45554455444
Q ss_pred cccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCcCccccch
Q 002514 428 ISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISF 507 (913)
Q Consensus 428 Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~ 507 (913)
+|+.|+|..|++.- +.+
T Consensus 222 --------------------~L~~LdLnrN~iri-------------ve~------------------------------ 238 (873)
T KOG4194|consen 222 --------------------KLESLDLNRNRIRI-------------VEG------------------------------ 238 (873)
T ss_pred --------------------hhhhhhccccceee-------------ehh------------------------------
Confidence 45556555555540 000
Q ss_pred hccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCC
Q 002514 508 LCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLL 587 (913)
Q Consensus 508 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 587 (913)
..+..+++|+.|.|..|.+...-...|-.+.++++|+|+.|++...--.++.++++|+.|++++|.|..+-++.+..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 11111256777777777777666667777788888888888887666667777888888888888888777777888888
Q ss_pred CCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhcccc
Q 002514 588 LKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSS 667 (913)
Q Consensus 588 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~ 667 (913)
|+.|+|++|+|+ .+++.-+..+..|++|+|++|.+...-...|..+++|+.|||++|.+++.+.+.-.-.
T Consensus 319 L~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f--------- 388 (873)
T KOG4194|consen 319 LKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF--------- 388 (873)
T ss_pred ceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh---------
Confidence 888888888887 5555555567788888888888876666677777888888888888776655421110
Q ss_pred ccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCcc
Q 002514 668 VLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNN 747 (913)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 747 (913)
..++.|+.|+|.+|+|....-..|.++.+|++|||.+|.
T Consensus 389 -----------------------------------------~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 389 -----------------------------------------NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred -----------------------------------------ccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 113344666666666664444556666666666666666
Q ss_pred ccccCCcccccCCCCCEeeCcC
Q 002514 748 LTGQITPKISQLKSLDFLDLSR 769 (913)
Q Consensus 748 l~~~ip~~l~~l~~L~~LdLs~ 769 (913)
|..+-|.+|..+ .|+.|-++.
T Consensus 428 iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 428 IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceeecccccccc-hhhhhhhcc
Confidence 666666666655 555555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-35 Score=309.72 Aligned_cols=369 Identities=26% Similarity=0.277 Sum_probs=264.9
Q ss_pred ccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCCCCCC-CCCCEEEccCCcCCccchhhhcCCCCC
Q 002514 316 CLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGL-SSLKSLYLGGNRLNGTINQSLGRMYKL 394 (913)
Q Consensus 316 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L 394 (913)
.-+.|++++|++....+..+.+++ +|+++++.+|.++ .+|.++.. .+|+.|+|.+|.|+..-.+.+..++.|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 445678888888777777777777 8888888888777 56665544 458999999999888777888888899
Q ss_pred cEEEeeCCCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeee
Q 002514 395 EKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYD 474 (913)
Q Consensus 395 ~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ 474 (913)
+.|||+.|.|+ .++...|..- .++++|+|++|.|+....+.|..+. +|..|.|+.|+++.
T Consensus 152 rslDLSrN~is-~i~~~sfp~~----~ni~~L~La~N~It~l~~~~F~~ln--sL~tlkLsrNritt------------- 211 (873)
T KOG4194|consen 152 RSLDLSRNLIS-EIPKPSFPAK----VNIKKLNLASNRITTLETGHFDSLN--SLLTLKLSRNRITT------------- 211 (873)
T ss_pred hhhhhhhchhh-cccCCCCCCC----CCceEEeeccccccccccccccccc--hheeeecccCcccc-------------
Confidence 99999999887 4444334332 2355566666666665555555554 45555555555541
Q ss_pred ccCCccccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccC
Q 002514 475 ISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKI 554 (913)
Q Consensus 475 ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 554 (913)
. +...+..+++|+.|+|..|.|.-.---.|.++++|+.|.+..|.++..-
T Consensus 212 -----------------------------L-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 212 -----------------------------L-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred -----------------------------c-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 1 1111112267777777777776443556777778888888888777666
Q ss_pred CCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCC
Q 002514 555 PDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHL 634 (913)
Q Consensus 555 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 634 (913)
...|..+.++++|+|..|+++..-..++-++++|+.|+|++|.|. .|...-++.+++|++|+|++|+|+...+..|.-+
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 667777778888888888877666677777788888888888776 4443333457778888888888877777777777
Q ss_pred CCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccce
Q 002514 635 PFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLV 714 (913)
Q Consensus 635 ~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 714 (913)
..|+.|+|++|.++..-...|..+++|
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL----------------------------------------------------- 367 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSL----------------------------------------------------- 367 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhh-----------------------------------------------------
Confidence 778888888887765544455544444
Q ss_pred eEEEcccCcCcccchh---hhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEEC
Q 002514 715 KMLDLSSNKLGGEVPE---EIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDL 791 (913)
Q Consensus 715 ~~L~Ls~N~l~~~ip~---~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 791 (913)
+.|||++|.|++.|-+ .|.+++.|+.|.|.+|++..+...+|..+..||.|||.+|.+-..-|..|.++ .|+.|-+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 7899999999877654 46778889999999999987666789999999999999999988888899888 7888776
Q ss_pred CCCcc
Q 002514 792 SYNNL 796 (913)
Q Consensus 792 s~N~L 796 (913)
..-.+
T Consensus 447 nSssf 451 (873)
T KOG4194|consen 447 NSSSF 451 (873)
T ss_pred cccce
Confidence 65443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.4e-34 Score=321.22 Aligned_cols=416 Identities=27% Similarity=0.333 Sum_probs=223.4
Q ss_pred CcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeE
Q 002514 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELV 321 (913)
Q Consensus 242 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 321 (913)
.+|+.|+++.|.+. .+|....+... |++++|.+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.++.+.
T Consensus 68 ~~L~~ln~s~n~i~-~vp~s~~~~~~-l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 68 SHLRQLNLSRNYIR-SVPSSCSNMRN-LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELA 143 (1081)
T ss_pred HHHhhcccchhhHh-hCchhhhhhhc-chhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHh
Confidence 44555555555444 34433333333 566666555555 45555666666666666666655 4555555555566666
Q ss_pred ccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEee
Q 002514 322 LCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLG 400 (913)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 400 (913)
.++|... ..++.. .++.+++..|.+.+.++. +..+.. .|+|.+|.+. ...+..+++|+.|...
T Consensus 144 ~s~N~~~----~~lg~~-------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~ 207 (1081)
T KOG0618|consen 144 ASNNEKI----QRLGQT-------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCE 207 (1081)
T ss_pred hhcchhh----hhhccc-------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhh
Confidence 6555111 011111 344555555555444443 333333 4566666554 1234455555555555
Q ss_pred CCCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCcc
Q 002514 401 GNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHF 480 (913)
Q Consensus 401 ~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l 480 (913)
.|++.... ++ .++++.|+.++|.++...+..
T Consensus 208 rn~ls~l~-------------------~~----------------g~~l~~L~a~~n~l~~~~~~p-------------- 238 (1081)
T KOG0618|consen 208 RNQLSELE-------------------IS----------------GPSLTALYADHNPLTTLDVHP-------------- 238 (1081)
T ss_pred hcccceEE-------------------ec----------------CcchheeeeccCcceeecccc--------------
Confidence 55543111 00 014444544444444222211
Q ss_pred ccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCC
Q 002514 481 EGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGS 560 (913)
Q Consensus 481 ~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 560 (913)
.+.+++.+++++|++.+.....+.. .+|+.++..+|+++ .+|..+....+|+.|.+..|.+. .+|.....
T Consensus 239 ------~p~nl~~~dis~n~l~~lp~wi~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~ 308 (1081)
T KOG0618|consen 239 ------VPLNLQYLDISHNNLSNLPEWIGAC--ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG 308 (1081)
T ss_pred ------ccccceeeecchhhhhcchHHHHhc--ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc
Confidence 1233333344444443333222222 56667777777664 56666666667777777777766 45555566
Q ss_pred CCCCCEEEcccCcccccCCh-hhhcCCC-CCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcC
Q 002514 561 LPNIQILSLHNNRLTGELPS-TLQNCLL-LKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQ 638 (913)
Q Consensus 561 l~~L~~L~L~~N~l~~~~p~-~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 638 (913)
+++|++|+|..|++. .+|. .+.-... |+.|+.+.|++. ..|..-.+..+.|+.|++.+|.+++..-+.+-+...|+
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 667777777777766 3343 2222222 556666666665 44533333455666777777777666555666666777
Q ss_pred EEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEE
Q 002514 639 ILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLD 718 (913)
Q Consensus 639 ~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 718 (913)
+|+|++|++......++.++..| +.|+
T Consensus 387 VLhLsyNrL~~fpas~~~kle~L-----------------------------------------------------eeL~ 413 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEEL-----------------------------------------------------EELN 413 (1081)
T ss_pred eeeecccccccCCHHHHhchHHh-----------------------------------------------------HHHh
Confidence 77777777664444455555444 5666
Q ss_pred cccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCccccc-CCccccCCCCCCeEECCCCc
Q 002514 719 LSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGG-IPSSLSQLSGLSVMDLSYNN 795 (913)
Q Consensus 719 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~ 795 (913)
||+|+++ .+|.++.++..|++|...+|++. ..| .+.++++|+.+|+|.|+|+-. +|..... +.|++||+++|.
T Consensus 414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 6666666 56666666666666666666666 344 566666666666666666633 2222221 566666666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-34 Score=315.91 Aligned_cols=440 Identities=29% Similarity=0.359 Sum_probs=336.3
Q ss_pred CcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeE
Q 002514 242 KSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELV 321 (913)
Q Consensus 242 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 321 (913)
-+|+.||+++|++. ..|..+..... |+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|++|+
T Consensus 45 v~L~~l~lsnn~~~-~fp~~it~l~~-L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQIS-SFPIQITLLSH-LRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred eeeEEeeccccccc-cCCchhhhHHH-HhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 45999999998886 67777766666 999999999888 56788889999999999999887 7888899999999999
Q ss_pred ccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCCCCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeC
Q 002514 322 LCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGG 401 (913)
Q Consensus 322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 401 (913)
+++|.+. .+|..+..+. .++.+..++|......+. .. .+.+++..|.+.+.++..+..+.. .|+|.+
T Consensus 121 lS~N~f~-~~Pl~i~~lt------~~~~~~~s~N~~~~~lg~---~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~ 187 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLT------AEEELAASNNEKIQRLGQ---TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY 187 (1081)
T ss_pred cchhccC-CCchhHHhhh------HHHHHhhhcchhhhhhcc---cc-chhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence 9999886 5666677776 788888888832222222 22 788888888888887777776665 688888
Q ss_pred CCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccc
Q 002514 402 NSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFE 481 (913)
Q Consensus 402 n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~ 481 (913)
|.+. .. |++++. +|+.+....|++. .+++
T Consensus 188 N~~~-~~------------------dls~~~---------------~l~~l~c~rn~ls-----------~l~~------ 216 (1081)
T KOG0618|consen 188 NEME-VL------------------DLSNLA---------------NLEVLHCERNQLS-----------ELEI------ 216 (1081)
T ss_pred chhh-hh------------------hhhhcc---------------chhhhhhhhcccc-----------eEEe------
Confidence 8765 21 111111 4555555555554 1111
Q ss_pred cCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCC
Q 002514 482 GPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSL 561 (913)
Q Consensus 482 g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 561 (913)
.-++++.|+.++|.++........ .+|++++++.|+++ .+|++++.+.+|+.++..+|++. .+|..+...
T Consensus 217 -----~g~~l~~L~a~~n~l~~~~~~p~p---~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~ 286 (1081)
T KOG0618|consen 217 -----SGPSLTALYADHNPLTTLDVHPVP---LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI 286 (1081)
T ss_pred -----cCcchheeeeccCcceeecccccc---ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh
Confidence 124677788888887743332222 68999999999998 56699999999999999999996 778888888
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCC-cceEeccCCcccccCCcccCCCCCcCEE
Q 002514 562 PNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPK-LIVLSLMSNKFHGIIPFQLCHLPFIQIL 640 (913)
Q Consensus 562 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L 640 (913)
.+|+.|.+.+|.+. -+|......+.|++|+|..|++. .+|..++..+.. |+.|+.+.|++.......=...+.|+.|
T Consensus 287 ~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 99999999999998 67777888999999999999997 888876644444 7888888888875543333456778899
Q ss_pred eCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcc
Q 002514 641 DLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLS 720 (913)
Q Consensus 641 ~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 720 (913)
.+.+|.++...-+.+.+. ..|+.|+|+
T Consensus 365 ylanN~Ltd~c~p~l~~~-----------------------------------------------------~hLKVLhLs 391 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNF-----------------------------------------------------KHLKVLHLS 391 (1081)
T ss_pred HHhcCcccccchhhhccc-----------------------------------------------------cceeeeeec
Confidence 999999986544444333 345999999
Q ss_pred cCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCcccc-c
Q 002514 721 SNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSG-K 799 (913)
Q Consensus 721 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~g-~ 799 (913)
+|+|.......+.++..|+.|+||+|+++ .+|..+.++..|++|..-.|++. ..| .+.++++|+.+|+|.|+|+- .
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 99999555567899999999999999999 78899999999999999999998 677 88999999999999999975 4
Q ss_pred CCCCCCCCccccCCCCCC
Q 002514 800 IPSGTQLQSFNASTYAGN 817 (913)
Q Consensus 800 iP~~~~~~~~~~~~~~gn 817 (913)
+|....-.++....+.||
T Consensus 469 l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hhhhCCCcccceeeccCC
Confidence 444322244555556777
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.6e-33 Score=295.42 Aligned_cols=390 Identities=26% Similarity=0.366 Sum_probs=232.4
Q ss_pred cEEEccCCccc-cccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCCCCCchhHhhhhccCCCCCCCcc
Q 002514 270 VELGLSSNLLQ-GSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLE 348 (913)
Q Consensus 270 ~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~ 348 (913)
+-.|+++|.++ +..|.....+++++-|.|...++. .+|+.++.+.+|++|.+++|++. .+...+..++ .|+
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp------~LR 81 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP------RLR 81 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch------hhH
Confidence 33444444444 234444555555555555555444 44555555555555555555544 2222333444 555
Q ss_pred EEEccCCcCc--cCCCCCCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCccccChhhhhccccccccccEE
Q 002514 349 SLDLSANAVT--GPIPELGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWL 426 (913)
Q Consensus 349 ~L~Ls~n~l~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L 426 (913)
.+++.+|++. |.++.+..+..|+.|||++|+++ ..|..+..-+++-.|+|++|+|. .+|...|.+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-------- 151 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-------- 151 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh--------
Confidence 5555555553 33333666666777777777766 55666666666666777777665 455555554442
Q ss_pred EcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCcCccccc
Q 002514 427 DISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSIS 506 (913)
Q Consensus 427 ~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~ 506 (913)
|-+|||++|++....|.
T Consensus 152 ----------------------LLfLDLS~NrLe~LPPQ----------------------------------------- 168 (1255)
T KOG0444|consen 152 ----------------------LLFLDLSNNRLEMLPPQ----------------------------------------- 168 (1255)
T ss_pred ----------------------HhhhccccchhhhcCHH-----------------------------------------
Confidence 33333333333311110
Q ss_pred hhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCC-ccCCCCCCCCCCCCEEEcccCcccccCChhhhcC
Q 002514 507 FLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFS-GKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNC 585 (913)
Q Consensus 507 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 585 (913)
.-.. ..|++|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+-++
T Consensus 169 -~RRL--~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 169 -IRRL--SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred -HHHH--hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 0000 34556666666554332334455677777777775533 356777777777888888888777 677777777
Q ss_pred CCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCc-ccchhhhhhhhhhhc
Q 002514 586 LLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPG-IIPKCFNNFTAMAQE 664 (913)
Q Consensus 586 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~l~~~ 664 (913)
.+|+.|+||+|+|+ ++..... ...+|++|+++.|+++ .+|..++.++.|+.|.+.+|++.- -+|..++.+.+|
T Consensus 245 ~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L--- 318 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL--- 318 (1255)
T ss_pred hhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---
Confidence 78888888888777 5555544 2567777777777777 567777777777777777777653 256666666555
Q ss_pred cccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEcc
Q 002514 665 KSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLS 744 (913)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 744 (913)
+.+..++|++. ..|+.+..+..|+.|+|+
T Consensus 319 --------------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 319 --------------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred --------------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 55666677776 677777777777778888
Q ss_pred CccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCC---C--cccccCCC
Q 002514 745 RNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSY---N--NLSGKIPS 802 (913)
Q Consensus 745 ~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~---N--~L~g~iP~ 802 (913)
+|++. ..|+++.-|+.|+.||+..|.--..-|.-=..-++|+.-|+.+ + .|.|..|.
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 88776 5677777777788888877765433332222224566655543 2 35565553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-32 Score=288.32 Aligned_cols=253 Identities=31% Similarity=0.415 Sum_probs=178.9
Q ss_pred cCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCC
Q 002514 108 RKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLS 187 (913)
Q Consensus 108 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~ 187 (913)
+-++..|-.|+++|.+++..+|..+..+.+ ++.|.|....+. .+|+.++.|.+|++|.+++|++.++.+ .++.++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~-~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---ELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQ-MTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---ELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhh-eeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh---hhccch
Confidence 345667788888898887778888888888 999999888877 789999999999999999998875544 366777
Q ss_pred CCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhHHhccC
Q 002514 188 SLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSS 267 (913)
Q Consensus 188 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 267 (913)
.||.+++.+|++... .+|..+..+ ..|+.||||+|+++ .+|..+-....
T Consensus 79 ~LRsv~~R~N~LKns-GiP~diF~l-----------------------------~dLt~lDLShNqL~-EvP~~LE~AKn 127 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNS-GIPTDIFRL-----------------------------KDLTILDLSHNQLR-EVPTNLEYAKN 127 (1255)
T ss_pred hhHHHhhhccccccC-CCCchhccc-----------------------------ccceeeecchhhhh-hcchhhhhhcC
Confidence 788888877777653 334444444 55555555555555 45555544444
Q ss_pred CCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCCCCCchhHhhhhccCCCCCCCc
Q 002514 268 NLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSL 347 (913)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (913)
+-.|+|++|+|..+....|.+++.|-.|||++|++. .+|..+..+..|+.|.|++|.+...-...+..++ +|
T Consensus 128 -~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt------sL 199 (1255)
T KOG0444|consen 128 -SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT------SL 199 (1255)
T ss_pred -cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch------hh
Confidence 666666666666433344566677777777777776 4555567777777777777766533222233333 77
Q ss_pred cEEEccCCcCc-cCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCc
Q 002514 348 ESLDLSANAVT-GPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLT 405 (913)
Q Consensus 348 ~~L~Ls~n~l~-~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 405 (913)
+.|.+++.+-+ ..+|. +..+.+|..+|++.|.+. .+|+.+..+++|+.|+|++|.|+
T Consensus 200 ~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 200 SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 77777776543 23444 888889999999999988 78889999999999999999876
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-24 Score=220.93 Aligned_cols=428 Identities=24% Similarity=0.258 Sum_probs=260.4
Q ss_pred ccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccC-CCCCCchhHhhhhccCCCC
Q 002514 265 VSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCS-NQLTGQLFEFIQNLSCGCA 343 (913)
Q Consensus 265 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~~ 343 (913)
++..-.+++|..|+|+...+.+|+.+++|+.|||++|.|+.+.|++|..+++|..|.+.+ |+|+......|+.+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~---- 140 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS---- 140 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH----
Confidence 344577888888888877777888888888888888888888888888888887777666 788877777777777
Q ss_pred CCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCccccChhhhhcccccccc
Q 002514 344 KNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQ 422 (913)
Q Consensus 344 ~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 422 (913)
+|+.|.+.-|++.-.... +..+++|..|.+.+|.+...--..|..+..++.+.+..|++... .+++.+..
T Consensus 141 --slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd------CnL~wla~- 211 (498)
T KOG4237|consen 141 --SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD------CNLPWLAD- 211 (498)
T ss_pred --HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc------cccchhhh-
Confidence 788888888877755555 77788888888888887743333777788888888888774321 11111110
Q ss_pred ccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCcCc
Q 002514 423 IDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFS 502 (913)
Q Consensus 423 L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~ 502 (913)
++..+.+. +.... ...-..+.+.++... ...+|... ...+..--.+.+...
T Consensus 212 ----~~a~~~ie------tsgar--c~~p~rl~~~Ri~q~-------------~a~kf~c~----~esl~s~~~~~d~~d 262 (498)
T KOG4237|consen 212 ----DLAMNPIE------TSGAR--CVSPYRLYYKRINQE-------------DARKFLCS----LESLPSRLSSEDFPD 262 (498)
T ss_pred ----HHhhchhh------cccce--ecchHHHHHHHhccc-------------chhhhhhh----HHhHHHhhccccCcC
Confidence 00001000 00000 000111111111100 00000000 001111111223333
Q ss_pred cccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhh
Q 002514 503 GSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTL 582 (913)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l 582 (913)
+..|..|+..+++|++|+|++|+++++-+.+|.....+++|.|..|++...-...|.++..|++|+|.+|+|+..-|.+|
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred CcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 44455666666888899999999988888888888889999999998887666778888888999999999988888888
Q ss_pred hcCCCCCEEECcCCcccccc-chhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcc---cchhhhhh
Q 002514 583 QNCLLLKLMDLGRNALSGEI-PTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGI---IPKCFNNF 658 (913)
Q Consensus 583 ~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~l~~l 658 (913)
..+.+|.+|+|-.|.+.... -.|+++.+. .+.-.|..| -+....++.++++.+.+... .|+..+-.
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr--------~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~ 412 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRLAWLGEWLR--------KKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCL 412 (498)
T ss_pred cccceeeeeehccCcccCccchHHHHHHHh--------hCCCCCCCC--CCCCchhccccchhccccccccCCccccCCC
Confidence 88888888888888765321 133333222 222222221 12233455566665554321 11111100
Q ss_pred hhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccC
Q 002514 659 TAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGL 738 (913)
Q Consensus 659 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L 738 (913)
.. ... | ..+ ...=++...|++.+. .+|..+- ...
T Consensus 413 ~s-------------------~~c-P-----------------~~c------~c~~tVvRcSnk~lk-~lp~~iP--~d~ 446 (498)
T KOG4237|consen 413 TS-------------------SPC-P-----------------PPC------TCLDTVVRCSNKLLK-LLPRGIP--VDV 446 (498)
T ss_pred CC-------------------CCC-C-----------------CCc------chhhhhHhhcccchh-hcCCCCC--chh
Confidence 00 000 0 000 000034455555555 4443332 234
Q ss_pred cEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCC
Q 002514 739 IAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYN 794 (913)
Q Consensus 739 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 794 (913)
..|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|+++++|.+|-+|||
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 56788888888 56665 56777 8899999988777778888999999988887
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6e-21 Score=239.39 Aligned_cols=347 Identities=22% Similarity=0.203 Sum_probs=180.0
Q ss_pred chhhcCCCCCcEEEccCCc------CCCcccccccCCc-ccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCc
Q 002514 284 PDAFEHMVSLQTLFLYSNE------LEGGIPKFFGNMC-CLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANA 356 (913)
Q Consensus 284 ~~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~ 356 (913)
+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+. .. +|+.|++.+|+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~-~~------~L~~L~L~~s~ 622 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR-PE------NLVKLQMQGSK 622 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC-cc------CCcEEECcCcc
Confidence 4457777777777775543 2234555565554 5777887777765 3343332 22 78888888877
Q ss_pred CccCCCCCCCCCCCCEEEccCCcCCccchhhhcCCCCCcEEEeeCCCCccccChhhhhccccccccccEEEcccccCCCC
Q 002514 357 VTGPIPELGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDT 436 (913)
Q Consensus 357 l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~ 436 (913)
+......+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|.. +..++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~------------------- 681 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLN------------------- 681 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccC-------------------
Confidence 76443346777788888887765444555 3667778888888777654444432 22222
Q ss_pred CChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCcCccccchhccccCCce
Q 002514 437 IPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKL 516 (913)
Q Consensus 437 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 516 (913)
+|+.|++++|...+.+|... .+++|+.|++++|...+.++.. ..+|
T Consensus 682 -----------~L~~L~L~~c~~L~~Lp~~i-------------------~l~sL~~L~Lsgc~~L~~~p~~----~~nL 727 (1153)
T PLN03210 682 -----------KLEDLDMSRCENLEILPTGI-------------------NLKSLYRLNLSGCSRLKSFPDI----STNI 727 (1153)
T ss_pred -----------CCCEEeCCCCCCcCccCCcC-------------------CCCCCCEEeCCCCCCccccccc----cCCc
Confidence 34444444433222222100 0112222222222111111110 0345
Q ss_pred eEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCC
Q 002514 517 MYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRN 596 (913)
Q Consensus 517 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 596 (913)
++|++++|.+. .+|..+ .+++|+.|++.++.... ++. .+....|......++|+.|++++|
T Consensus 728 ~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~-l~~----------------~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 728 SWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK-LWE----------------RVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CeeecCCCccc-cccccc-cccccccccccccchhh-ccc----------------cccccchhhhhccccchheeCCCC
Confidence 55555555554 334333 34555555555432210 000 001111111222345556666665
Q ss_pred ccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccc
Q 002514 597 ALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYS 676 (913)
Q Consensus 597 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~ 676 (913)
...+.+|.++. ++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|...
T Consensus 789 ~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~--------------------- 845 (1153)
T PLN03210 789 PSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS--------------------- 845 (1153)
T ss_pred CCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---------------------
Confidence 55555555554 46666666666554434445443 56666666666664433333211
Q ss_pred cccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCccc
Q 002514 677 FISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI 756 (913)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 756 (913)
.+++.|+|++|.++ .+|..+..+++|+.|+|++|+--..+|..+
T Consensus 846 -----------------------------------~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 846 -----------------------------------TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred -----------------------------------cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 12356677777766 566667777777777776633333456666
Q ss_pred ccCCCCCEeeCcCCc
Q 002514 757 SQLKSLDFLDLSRNR 771 (913)
Q Consensus 757 ~~l~~L~~LdLs~N~ 771 (913)
..+++|+.|++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 667777777777663
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=9.4e-22 Score=227.96 Aligned_cols=223 Identities=27% Similarity=0.287 Sum_probs=129.6
Q ss_pred CCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEE
Q 002514 488 PSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQIL 567 (913)
Q Consensus 488 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 567 (913)
+++|+.|++++|+++.... . .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|.. +++|+.|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~-l----p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~L 307 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV-L----PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQEL 307 (788)
T ss_pred CCCCcEEEecCCccCcccC-c----ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---cccccee
Confidence 3444455555554443211 1 145666666666665 23332 245666666666666 33432 3566777
Q ss_pred EcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCC
Q 002514 568 SLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647 (913)
Q Consensus 568 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 647 (913)
++++|++++ +|.. ...|+.|++++|+++ .+|.. ..+|++|++++|+|++ +|.. .++|+.|++++|++
T Consensus 308 dLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L 374 (788)
T PRK15387 308 SVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRL 374 (788)
T ss_pred ECCCCcccc-CCCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccc
Confidence 777776663 3332 124566667777766 45531 2467777777777764 3332 24566677777776
Q ss_pred CcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCccc
Q 002514 648 PGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGE 727 (913)
Q Consensus 648 ~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ 727 (913)
++ +|... ..|+.|+|++|+|++
T Consensus 375 ~~-LP~l~--------------------------------------------------------~~L~~LdLs~N~Lt~- 396 (788)
T PRK15387 375 TS-LPALP--------------------------------------------------------SGLKELIVSGNRLTS- 396 (788)
T ss_pred cc-Ccccc--------------------------------------------------------cccceEEecCCcccC-
Confidence 63 33211 113667777777773
Q ss_pred chhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCcccccCCC
Q 002514 728 VPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPS 802 (913)
Q Consensus 728 ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~g~iP~ 802 (913)
+|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 397 LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 397 LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 4433 2457777777777774 55432 35667777777777 6777777777777777777777776664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1e-21 Score=227.56 Aligned_cols=268 Identities=25% Similarity=0.358 Sum_probs=216.0
Q ss_pred ccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCeeeccCCccccCCCCCCCCCceeeccCCc
Q 002514 421 NQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNK 500 (913)
Q Consensus 421 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~ 500 (913)
..-..|+++++.++ .+|..+.. +|+.|++.+|+++. +|.....|++|++++|+++. +|..+++|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~~----~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLPA----HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchhc----CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence 34567999999998 46666543 79999999999984 77776779999999999995 57788999999999999
Q ss_pred CccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCCh
Q 002514 501 FSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPS 580 (913)
Q Consensus 501 l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 580 (913)
+....... .+|+.|++++|+++ .+|. ..++|+.|++++|++.+ +|.. ..+|+.|++++|++++ +|.
T Consensus 274 L~~Lp~lp-----~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 274 LTHLPALP-----SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred hhhhhhch-----hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 87543321 57999999999998 4554 24789999999999995 4542 3468899999999984 664
Q ss_pred hhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhh
Q 002514 581 TLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTA 660 (913)
Q Consensus 581 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (913)
. ..+|+.|+|++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|...
T Consensus 340 l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~----- 401 (788)
T PRK15387 340 L---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP----- 401 (788)
T ss_pred c---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc-----
Confidence 2 257999999999999 67753 4678999999999995 5543 3579999999999985 44321
Q ss_pred hhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcE
Q 002514 661 MAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIA 740 (913)
Q Consensus 661 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~ 740 (913)
+.|+.|++++|+|++ +|... .+|+.
T Consensus 402 ---------------------------------------------------s~L~~LdLS~N~Lss-IP~l~---~~L~~ 426 (788)
T PRK15387 402 ---------------------------------------------------SELKELMVSGNRLTS-LPMLP---SGLLS 426 (788)
T ss_pred ---------------------------------------------------cCCCEEEccCCcCCC-CCcch---hhhhh
Confidence 123889999999994 77643 46788
Q ss_pred EEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCC
Q 002514 741 MNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQL 783 (913)
Q Consensus 741 L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 783 (913)
|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|..+..+
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 999999999 789999999999999999999999999887554
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.1e-20 Score=237.03 Aligned_cols=342 Identities=19% Similarity=0.265 Sum_probs=196.9
Q ss_pred CCcccEEECCCCC------CCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCC
Q 002514 241 SKSLEFLDLSENN------LTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNM 314 (913)
Q Consensus 241 l~~L~~L~Ls~n~------l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 314 (913)
+++|+.|.+..+. +...+|..+..++.+|+.|++.++.+. .+|..| ...+|+.|++.+|.+. .++..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccC
Confidence 3566666654432 122344444444445666666665554 344444 3455666666665554 344445555
Q ss_pred cccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCC
Q 002514 315 CCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYK 393 (913)
Q Consensus 315 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 393 (913)
++|+.|+++++.....+|. +..++ +|+.|++++|.....+|. +..+++|+.|++++|...+.+|..+ ++++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~------~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMAT------NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCC------cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 5555555555443333332 33333 555555555544444444 5555555555555543333444333 4455
Q ss_pred CcEEEeeCCCCccccChhhhhccccccccccEEEcccccCCCCCChhhhhcccCCcceEEccCcccccCCCCcccccCee
Q 002514 394 LEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTY 473 (913)
Q Consensus 394 L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l 473 (913)
|+.|++++|...+.+|. ...+|+.|++++|.+.. +|..+ .+ ++|++|.+.++...
T Consensus 706 L~~L~Lsgc~~L~~~p~--------~~~nL~~L~L~~n~i~~-lP~~~-~l--~~L~~L~l~~~~~~------------- 760 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD--------ISTNISWLDLDETAIEE-FPSNL-RL--ENLDELILCEMKSE------------- 760 (1153)
T ss_pred CCEEeCCCCCCcccccc--------ccCCcCeeecCCCcccc-ccccc-cc--cccccccccccchh-------------
Confidence 55555555543222221 11123334444444332 22211 01 13333333222110
Q ss_pred eccCCccccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCcc
Q 002514 474 DISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGK 553 (913)
Q Consensus 474 ~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 553 (913)
.+.+. +....+ ......++|+.|++++|...+.+|..++++++|+.|++++|...+.
T Consensus 761 -----~l~~~-----------------~~~l~~-~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 761 -----KLWER-----------------VQPLTP-LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred -----hcccc-----------------ccccch-hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 00000 000000 0011126899999999988888999999999999999999876667
Q ss_pred CCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCC
Q 002514 554 IPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCH 633 (913)
Q Consensus 554 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 633 (913)
+|..+ .+++|++|++++|.....+|.. .++|+.|+|++|.+. .+|.++. .+++|++|++++|+--..+|..+..
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred eCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCccccc
Confidence 88776 6899999999998776666653 367999999999998 8998887 6999999999986544457778889
Q ss_pred CCCcCEEeCCCCCC
Q 002514 634 LPFIQILDLSSNNI 647 (913)
Q Consensus 634 l~~L~~L~Ls~N~l 647 (913)
+++|+.+++++|.-
T Consensus 892 L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 892 LKHLETVDFSDCGA 905 (1153)
T ss_pred ccCCCeeecCCCcc
Confidence 99999999999853
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=4.6e-22 Score=201.93 Aligned_cols=288 Identities=24% Similarity=0.234 Sum_probs=158.5
Q ss_pred CcEEEEEcCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEE-CCCCCCCCCCCccCCCCCC
Q 002514 84 HHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLD-LGWAGFAGSVPPQLGNLSN 162 (913)
Q Consensus 84 ~~v~~L~L~~~~~~l~g~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~-Ls~n~~~~~~p~~l~~l~~ 162 (913)
...+.|+|..|.+. .+++.+|..+++||.||||+|.|+.+ -|+.+..++. |..|- .++|+|+......|++|..
T Consensus 67 ~~tveirLdqN~I~---~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~-l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS---SIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLAS-LLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccCCcc---cCChhhccchhhhceecccccchhhc-ChHhhhhhHh-hhHHHhhcCCchhhhhhhHhhhHHH
Confidence 35566777665554 44456677777777777777777776 5666666666 44433 3446666444456777777
Q ss_pred CCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhH-hhcCCCCCCEEEccCCCCCCCCCCCCccccccCC
Q 002514 163 LQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPL-VVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSS 241 (913)
Q Consensus 163 L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 241 (913)
|+.|.+.-|++.-+.. ..+..+++|..|.+.+|.+..+ +. .+..+..++.+.+..|.+...
T Consensus 142 lqrLllNan~i~Cir~--~al~dL~~l~lLslyDn~~q~i---~~~tf~~l~~i~tlhlA~np~icd------------- 203 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQ--DALRDLPSLSLLSLYDNKIQSI---CKGTFQGLAAIKTLHLAQNPFICD------------- 203 (498)
T ss_pred HHHHhcChhhhcchhH--HHHHHhhhcchhcccchhhhhh---ccccccchhccchHhhhcCccccc-------------
Confidence 7777777666654333 2366667777777777666542 22 344555555555555543211
Q ss_pred CcccEE--ECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCC-CCCcEEEccCCcCCCccc-ccccCCccc
Q 002514 242 KSLEFL--DLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHM-VSLQTLFLYSNELEGGIP-KFFGNMCCL 317 (913)
Q Consensus 242 ~~L~~L--~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p-~~l~~l~~L 317 (913)
-+|+.+ ++..+.+ .+... .-.....+.+..+...-+..|... ..+..--.+.+...+..| ..|..+++|
T Consensus 204 CnL~wla~~~a~~~i------etsga-rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPI------ETSGA-RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred cccchhhhHHhhchh------hcccc-eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 111111 0000000 00000 001111122222222212222111 111111111222222223 346677777
Q ss_pred ceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCccchhhhcCCCCCcE
Q 002514 318 NELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEK 396 (913)
Q Consensus 318 ~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 396 (913)
+.|++++|++++.-..+|.... .+++|.|..|++...-.. |.++..|+.|+|.+|+|+...|..|..+.+|.+
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a------~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAA------ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred eEeccCCCccchhhhhhhcchh------hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 7777777777766666776666 777777777776644333 777888888888888888888888888888888
Q ss_pred EEeeCCCCccc
Q 002514 397 LSLGGNSLTGV 407 (913)
Q Consensus 397 L~L~~n~l~~~ 407 (913)
|++-.|++...
T Consensus 351 l~l~~Np~~Cn 361 (498)
T KOG4237|consen 351 LNLLSNPFNCN 361 (498)
T ss_pred eehccCcccCc
Confidence 88888876543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.9e-19 Score=210.52 Aligned_cols=53 Identities=28% Similarity=0.549 Sum_probs=22.3
Q ss_pred eEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCccc
Q 002514 715 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFF 773 (913)
Q Consensus 715 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 773 (913)
+.|+|++|+|+ .+|..+. +.|+.|+|++|+|+ .+|..+. ..|+.||+++|+|+
T Consensus 349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV 401 (754)
T ss_pred cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence 44444444444 2333332 34444444444444 2333332 13444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4e-19 Score=207.90 Aligned_cols=265 Identities=24% Similarity=0.351 Sum_probs=201.4
Q ss_pred CcceEEccCcccccCCC-CcccccCeeeccCCccccCCCCCCCCCceeeccCCcCccccchhccccCCceeEEEcCCCcc
Q 002514 448 KLSFLNLSNNQIKGKLP-DLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLL 526 (913)
Q Consensus 448 ~L~~L~L~~n~l~~~~p-~~~~~l~~l~ls~n~l~g~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l 526 (913)
+...|++++++++. +| .+...++.|++++|.++......+.+|+.|++++|++++...... .+|+.|++++|.+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~----~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP----DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCc-CCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh----ccccEEECcCCcc
Confidence 67899999999885 55 455669999999999996544457799999999999885433222 5799999999999
Q ss_pred cccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhH
Q 002514 527 SGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWI 606 (913)
Q Consensus 527 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 606 (913)
. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc
Confidence 8 6676654 58999999999998 5676654 589999999999984 565443 47899999999998 677654
Q ss_pred hhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCcc
Q 002514 607 GESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLV 686 (913)
Q Consensus 607 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (913)
. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+.
T Consensus 324 ~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp------------------------------ 366 (754)
T PRK15370 324 P---PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP------------------------------ 366 (754)
T ss_pred c---ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc------------------------------
Confidence 3 689999999999986 565553 789999999999873 554331
Q ss_pred ccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCccc----ccCCCC
Q 002514 687 WYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKI----SQLKSL 762 (913)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l----~~l~~L 762 (913)
+.|+.|+|++|+|+ .+|..+. ..|+.|++++|+++ .+|..+ +.++.+
T Consensus 367 -------------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 367 -------------------------PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQP 417 (754)
T ss_pred -------------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCc
Confidence 13488999999999 5677665 36999999999998 456544 445788
Q ss_pred CEeeCcCCcccccCCccccCCCCCCeEECCCCcccccC
Q 002514 763 DFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKI 800 (913)
Q Consensus 763 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~g~i 800 (913)
..|++.+|.++. ..+ ..|+.+ ++.+.+.|++
T Consensus 418 ~~L~L~~Npls~---~tl---~~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 418 TRIIVEYNPFSE---RTI---QNMQRL-MSSVGYQGPR 448 (754)
T ss_pred cEEEeeCCCccH---HHH---HHHHHh-hhcccccCCc
Confidence 999999999983 233 344444 4556666643
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5e-18 Score=185.48 Aligned_cols=235 Identities=25% Similarity=0.249 Sum_probs=113.4
Q ss_pred CceeEEEcCCCccccc----CCccccccCCCcEEeCCCCcCCc------cCCCCCCCCCCCCEEEcccCcccccCChhhh
Q 002514 514 HKLMYLDLSNNLLSGR----LPDCWLLFDRLGILDLANNNFSG------KIPDSMGSLPNIQILSLHNNRLTGELPSTLQ 583 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 583 (913)
..|++|+++++.+++. ++..+...+++++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3455555555555321 33334444555556655555441 1222344455666666666666544444444
Q ss_pred cCCC---CCEEECcCCccccc----cchhHhhcC-CCcceEeccCCccccc----CCcccCCCCCcCEEeCCCCCCCccc
Q 002514 584 NCLL---LKLMDLGRNALSGE----IPTWIGESL-PKLIVLSLMSNKFHGI----IPFQLCHLPFIQILDLSSNNIPGII 651 (913)
Q Consensus 584 ~l~~---L~~L~Ls~N~l~~~----ip~~~~~~l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 651 (913)
.+.. |+.|++++|++++. +...+. .+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 4444 66666666655521 112222 23 5566666666665521 2233445556666666666655321
Q ss_pred chhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccc---
Q 002514 652 PKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEV--- 728 (913)
Q Consensus 652 p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~i--- 728 (913)
...+.. .+ ...+.|+.|++++|.+++..
T Consensus 182 ~~~l~~--~l-----------------------------------------------~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 182 IRALAE--GL-----------------------------------------------KANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred HHHHHH--HH-----------------------------------------------HhCCCCCEEeccCCccChHHHHH
Confidence 111100 00 01123355666666665332
Q ss_pred -hhhhhccccCcEEEccCccccccCCccccc-----CCCCCEeeCcCCccc----ccCCccccCCCCCCeEECCCCcccc
Q 002514 729 -PEEIMDLVGLIAMNLSRNNLTGQITPKISQ-----LKSLDFLDLSRNRFF----GGIPSSLSQLSGLSVMDLSYNNLSG 798 (913)
Q Consensus 729 -p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~LdLs~N~l~----~~ip~~l~~l~~L~~L~ls~N~L~g 798 (913)
+..+..+++|++|++++|.+++.....+.. .+.|++|++++|.++ ..++..+..++.|+++|+++|+++.
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 233344555666666666665432222221 256666666666665 1233344445566666666666553
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=2.2e-17 Score=180.36 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=40.4
Q ss_pred EeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCC----CCccCCCCCCCCEEECCCCcCcccCCC----hhhhccCC
Q 002514 116 LDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGS----VPPQLGNLSNLQYLNLGYNDLLSVGNL----LHWLYHLS 187 (913)
Q Consensus 116 L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~Ls~n~l~~l~~~----~~~l~~l~ 187 (913)
|+|..+.+++......+..+.. |++|+++++.++.. ++..+...+.|++|+++++.+...+.. ...+.+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~-L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLC-LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhh-ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4455555553334445555555 66666666555321 333444555566666665544321111 12234455
Q ss_pred CCcEEEcCCccCC
Q 002514 188 SLRYLHLGHNNLS 200 (913)
Q Consensus 188 ~L~~L~Ls~n~l~ 200 (913)
+|++|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~ 94 (319)
T cd00116 82 GLQELDLSDNALG 94 (319)
T ss_pred ceeEEEccCCCCC
Confidence 5555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6e-18 Score=152.54 Aligned_cols=182 Identities=30% Similarity=0.505 Sum_probs=130.5
Q ss_pred CCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCE
Q 002514 560 SLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQI 639 (913)
Q Consensus 560 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 639 (913)
.+...+.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 3455566666666666 45555666677777777777776 6777666 5777777777777776 56777888888888
Q ss_pred EeCCCCCCCc-ccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeeeecccccccccccceeEEE
Q 002514 640 LDLSSNNIPG-IIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLD 718 (913)
Q Consensus 640 L~Ls~N~l~~-~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 718 (913)
|||.+|++.. .+|..|..++.| ..|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-----------------------------------------------------raly 133 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-----------------------------------------------------RALY 133 (264)
T ss_pred hhccccccccccCCcchhHHHHH-----------------------------------------------------HHHH
Confidence 8888887764 355555555544 6677
Q ss_pred cccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCC---CCCeEECCCCc
Q 002514 719 LSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLS---GLSVMDLSYNN 795 (913)
Q Consensus 719 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~---~L~~L~ls~N~ 795 (913)
|++|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++. +=+.+.+.+|+
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 8888887 78888888888998888888887 67888888889999999999988 6777777653 22344556676
Q ss_pred ccccCC
Q 002514 796 LSGKIP 801 (913)
Q Consensus 796 L~g~iP 801 (913)
..-+|-
T Consensus 211 wv~pIa 216 (264)
T KOG0617|consen 211 WVNPIA 216 (264)
T ss_pred CCChHH
Confidence 655444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.7e-17 Score=149.72 Aligned_cols=184 Identities=27% Similarity=0.515 Sum_probs=109.0
Q ss_pred cCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceE
Q 002514 537 FDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVL 616 (913)
Q Consensus 537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 616 (913)
++..+.|.+|+|+++ .+|..+..+.+|+.|++++|+++ .+|..+..+++|+.|+++-|++. .+|..++ .+|.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence 334444555555555 34444555555555555555555 44555555555555555555554 5555555 45555555
Q ss_pred eccCCcccc-cCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCcccc
Q 002514 617 SLMSNKFHG-IIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQ 695 (913)
Q Consensus 617 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (913)
|+.+|++.. ..|..|..++.|+.|+|++|.+. .+|..++++++|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------------------------------- 152 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------------------------------- 152 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence 555555543 34556666666666666666664 555555555555
Q ss_pred ceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCC---CCEeeCcCCcc
Q 002514 696 AELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKS---LDFLDLSRNRF 772 (913)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~---L~~LdLs~N~l 772 (913)
+.|.+..|.+- ..|.+++.++.|+.|++.+|+++ .+|+.++++.- =+.+.+.+|..
T Consensus 153 -------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 153 -------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred -------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 55666666665 67777888888888888888887 56666665532 24566677777
Q ss_pred cccCCccc
Q 002514 773 FGGIPSSL 780 (913)
Q Consensus 773 ~~~ip~~l 780 (913)
...|.++|
T Consensus 212 v~pIaeQf 219 (264)
T KOG0617|consen 212 VNPIAEQF 219 (264)
T ss_pred CChHHHHH
Confidence 76666654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=5.5e-15 Score=173.13 Aligned_cols=117 Identities=38% Similarity=0.665 Sum_probs=104.3
Q ss_pred ceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECC
Q 002514 713 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLS 792 (913)
Q Consensus 713 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 792 (913)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.||++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--CCCccccCCCCCC-CCCCCCCCCCCC
Q 002514 793 YNNLSGKIPSGT--QLQSFNASTYAGN-ELCGLPLPNKCP 829 (913)
Q Consensus 793 ~N~L~g~iP~~~--~~~~~~~~~~~gn-~lcg~~~~~~c~ 829 (913)
+|+++|.+|..- .+..+....+.+| .+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999741 1222334568899 999987656674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=3.5e-12 Score=149.62 Aligned_cols=128 Identities=36% Similarity=0.591 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCC----cccceeecCC--C--CcEEEEEcCCCCCCCcceecCccc
Q 002514 36 RCIDEEREALLSFKQSLVDEHGFLSSWGSEDNKSDCC----EWIGVYCRNK--T--HHVYALDLQDGSLKLKGTILSPSL 107 (913)
Q Consensus 36 ~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c----~w~gv~c~~~--~--~~v~~L~L~~~~~~l~g~~~~~~l 107 (913)
.+.++|.+||+++|+++.++.. .+|. +..|| .|.||.|... . .+|+.|+|++ ..+.|.+ ++.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--n~L~g~i-p~~i 438 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--QGLRGFI-PNDI 438 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC--CCccccC-CHHH
Confidence 4677899999999999976542 4786 33443 7999999532 2 2589999987 5566777 8889
Q ss_pred cCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCc
Q 002514 108 RKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLL 174 (913)
Q Consensus 108 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~ 174 (913)
.++++|++|+|++|.+.+. +|..++.+++ |++|+|++|.+++.+|..++++++|++|+|++|.+.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~-L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGN-IPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred hCCCCCCEEECCCCcccCc-CChHHhCCCC-CCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 9999999999999999886 8888999998 999999999999999999999999999999999876
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=3.7e-13 Score=143.89 Aligned_cols=193 Identities=27% Similarity=0.434 Sum_probs=131.8
Q ss_pred ceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECc
Q 002514 515 KLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLG 594 (913)
Q Consensus 515 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 594 (913)
--...|++.|++. ++|..++.+..|+.+.++.|.+- .+|..+.++..|++|||+.|+++ .+|..++.|+ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3445677777776 66777777777777777777776 66777777777777777777777 5666666653 6777777
Q ss_pred CCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccc
Q 002514 595 RNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSN 674 (913)
Q Consensus 595 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~ 674 (913)
+|+++ .+|..++ .++.|..||.+.|.+. .+|..++.+.+|+.|.+..|++.. +|..+..++
T Consensus 152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp--------------- 212 (722)
T KOG0532|consen 152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP--------------- 212 (722)
T ss_pred cCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc---------------
Confidence 77776 7777776 5777777777777776 455666777777777777777653 343333221
Q ss_pred cccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCc
Q 002514 675 YSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITP 754 (913)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 754 (913)
|..||+|+|+++ .||-.|..++.|++|-|.+|.+. ..|.
T Consensus 213 ---------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 213 ---------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred ---------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 266888888887 78888888888888888888887 4455
Q ss_pred cc---ccCCCCCEeeCcCCc
Q 002514 755 KI---SQLKSLDFLDLSRNR 771 (913)
Q Consensus 755 ~l---~~l~~L~~LdLs~N~ 771 (913)
.+ |...--++|+..-++
T Consensus 252 qIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 252 QICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhccceeeeeeecchhcc
Confidence 44 233334566666664
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.8e-13 Score=144.82 Aligned_cols=159 Identities=30% Similarity=0.508 Sum_probs=82.2
Q ss_pred ceeeccCCcCccccchhccccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEccc
Q 002514 492 SVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHN 571 (913)
Q Consensus 492 ~~L~ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 571 (913)
...|++.|++.......+.. ..|+.+.|..|.+. .+|.+++++..|++|||+.|+++ ..|..+..|+ |+.|.+++
T Consensus 78 ~~aDlsrNR~~elp~~~~~f--~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAF--VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccccCchHHHHH--HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 34455555555444333333 34555555555554 45555555555555555555555 4444444443 55555555
Q ss_pred CcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCccc
Q 002514 572 NRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGII 651 (913)
Q Consensus 572 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 651 (913)
|+++ .+|+.++....|..||.+.|.+. .+|..++ ++.+|+.|.++.|.+.. +|+.++. -.|..||+|+|+++ .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ec
Confidence 5555 45555555555555555555555 5555555 45555555555555552 3334442 23555555555554 45
Q ss_pred chhhhhhhhh
Q 002514 652 PKCFNNFTAM 661 (913)
Q Consensus 652 p~~l~~l~~l 661 (913)
|-+|.+|+.|
T Consensus 227 Pv~fr~m~~L 236 (722)
T KOG0532|consen 227 PVDFRKMRHL 236 (722)
T ss_pred chhhhhhhhh
Confidence 5555555444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.1e-11 Score=137.05 Aligned_cols=123 Identities=38% Similarity=0.518 Sum_probs=65.7
Q ss_pred EEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCC-CCCEEEcccCcccccCChhhhcCCCCCEEECcCC
Q 002514 518 YLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLP-NIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRN 596 (913)
Q Consensus 518 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 596 (913)
.++++.|.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666665322 223334456666666666666 3444444443 6666666666666 44445566666666666666
Q ss_pred ccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCC
Q 002514 597 ALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNN 646 (913)
Q Consensus 597 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 646 (913)
++. .+|.... ..+.|+.|++++|++.. +|.....+..|+++++++|+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCc
Confidence 665 5555443 35555555555555552 23222233335555555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.6e-11 Score=136.34 Aligned_cols=198 Identities=34% Similarity=0.491 Sum_probs=119.6
Q ss_pred EEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCC-CCCEEECcCCccccccchhHhhcCCCcceEeccC
Q 002514 542 ILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCL-LLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMS 620 (913)
Q Consensus 542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~ 620 (913)
.++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+. .+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 4666666653222 22334466777777777776 4444455553 6777777777776 5655554 577777777777
Q ss_pred CcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCccccCCCccccceeee
Q 002514 621 NKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTW 700 (913)
Q Consensus 621 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (913)
|++... |...+.++.|+.|++++|+++.. |........
T Consensus 173 N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~---------------------------------------- 210 (394)
T COG4886 173 NDLSDL-PKLLSNLSNLNNLDLSGNKISDL-PPEIELLSA---------------------------------------- 210 (394)
T ss_pred chhhhh-hhhhhhhhhhhheeccCCccccC-chhhhhhhh----------------------------------------
Confidence 777633 33334667777777777777633 322221111
Q ss_pred ecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccc
Q 002514 701 KGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSL 780 (913)
Q Consensus 701 ~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l 780 (913)
|+.|++++|.+. .++..+.++..+..+.+.+|++.. ++..++.+++++.|++++|.++. ++. +
T Consensus 211 -------------L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-i~~-~ 273 (394)
T COG4886 211 -------------LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS-ISS-L 273 (394)
T ss_pred -------------hhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccc-ccc-c
Confidence 255666666433 455566666666666677776663 25566666777777777777763 333 6
Q ss_pred cCCCCCCeEECCCCcccccCCC
Q 002514 781 SQLSGLSVMDLSYNNLSGKIPS 802 (913)
Q Consensus 781 ~~l~~L~~L~ls~N~L~g~iP~ 802 (913)
..+..|+.||+++|.++...|.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 6667777777777777665554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.7e-12 Score=130.57 Aligned_cols=217 Identities=25% Similarity=0.216 Sum_probs=114.7
Q ss_pred CCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccc
Q 002514 159 NLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHL 238 (913)
Q Consensus 159 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 238 (913)
++.+|+...|.++.+...+.. .....|++++.|||++|-+.....+......+|+|+.|+++.|.+...... ...
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NTT 193 (505)
T ss_pred hHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cch
Confidence 344455555544443322211 224445555555555555554444455555666666666666665443322 111
Q ss_pred cCCCcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCccc--ccccCCcc
Q 002514 239 NSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIP--KFFGNMCC 316 (913)
Q Consensus 239 ~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~ 316 (913)
..+++|+.|.++.|.++-.-..++....++|+.|++..|............+..|+.|||++|++.. .+ ...+.++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 1337788888888887644344444445558888888885333333344556778888888887652 22 34567777
Q ss_pred cceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCcc--CCCCCCCCCCCCEEEccCCcCC
Q 002514 317 LNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTG--PIPELGGLSSLKSLYLGGNRLN 381 (913)
Q Consensus 317 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~L~~n~l~ 381 (913)
|+.|+++.+.+................+++|+.|++..|++.. ....+..+++|+.|.+..|.++
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888887777653211111000001122356666666666532 2222444455555555555544
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-11 Score=122.81 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=69.3
Q ss_pred CcEEEEEcCCCCCCCcc-eecCccccCCCCCCEEeCCCCCCCCC---CccchHHh-------hhccCcEEECCCCCCCCC
Q 002514 84 HHVYALDLQDGSLKLKG-TILSPSLRKLQHLTYLDLSDNDFSGI---PIADFIGS-------LSSKLRHLDLGWAGFAGS 152 (913)
Q Consensus 84 ~~v~~L~L~~~~~~l~g-~~~~~~l~~l~~L~~L~Ls~n~i~~~---~~~~~~~~-------l~~~L~~L~Ls~n~~~~~ 152 (913)
..++.|+|+||..+... ..+.+.+.+.+.|+..++|+- +++. .+|..+.. .|+ |++||||.|.|.-.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~-L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPK-LQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCc-eeEeeccccccCcc
Confidence 46788888886554321 112456777778888887753 2221 13333322 233 66666666666543
Q ss_pred CCccC----CCCCCCCEEECCCCcCcccCCCh-----------hhhccCCCCcEEEcCCccCCCC--CChhHhhcCCCCC
Q 002514 153 VPPQL----GNLSNLQYLNLGYNDLLSVGNLL-----------HWLYHLSSLRYLHLGHNNLSNS--NDWPLVVYKLSSL 215 (913)
Q Consensus 153 ~p~~l----~~l~~L~~L~Ls~n~l~~l~~~~-----------~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L 215 (913)
-++.| ..+..|++|.|.+|.+....+.. .....-+.||.++..+|++.+. ..+...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 33322 34566666666666554222211 0122334555555555554432 2233344444455
Q ss_pred CEEEccCCCC
Q 002514 216 TTLILEGCDL 225 (913)
Q Consensus 216 ~~L~L~~n~l 225 (913)
+.+.+..|.+
T Consensus 188 eevr~~qN~I 197 (382)
T KOG1909|consen 188 EEVRLSQNGI 197 (382)
T ss_pred ceEEEecccc
Confidence 5555544444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=6e-11 Score=117.14 Aligned_cols=205 Identities=23% Similarity=0.206 Sum_probs=121.2
Q ss_pred CCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccc---cCChhhhcCCCCCEEECcCCccccccchhH
Q 002514 530 LPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTG---ELPSTLQNCLLLKLMDLGRNALSGEIPTWI 606 (913)
Q Consensus 530 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 606 (913)
+|-.+.-+.+|..+.+|.+.-..+ -+-...-|.|+++...+.-++. .+|.....=..-..=+...-.....+|.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT-- 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADT-- 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecch--
Confidence 344445566777777777653321 1112223667777776654441 1222110000000001111111122332
Q ss_pred hhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccccccccccCCCCCcc
Q 002514 607 GESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLV 686 (913)
Q Consensus 607 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (913)
...|+++||++|.|+ .+.+++.-+|.++.|++|+|.+...- .+..+
T Consensus 283 ---Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L---------------------------- 328 (490)
T KOG1259|consen 283 ---WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAEL---------------------------- 328 (490)
T ss_pred ---Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhc----------------------------
Confidence 345777777777777 44556666777888888888775321 12222
Q ss_pred ccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEee
Q 002514 687 WYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLD 766 (913)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld 766 (913)
++|+.||||+|.++ .+...-..+-+.+.|+|+.|.+... ..++++-+|+.||
T Consensus 329 -------------------------~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 329 -------------------------PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD 380 (490)
T ss_pred -------------------------ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence 33477888888877 4444555667788888888887632 4577888899999
Q ss_pred CcCCcccccC-CccccCCCCCCeEECCCCccccc
Q 002514 767 LSRNRFFGGI-PSSLSQLSGLSVMDLSYNNLSGK 799 (913)
Q Consensus 767 Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~L~g~ 799 (913)
+++|++.... -..+++|+.|+.+-+.+|++.+.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999987432 24578899999999999999974
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.9e-10 Score=113.71 Aligned_cols=131 Identities=27% Similarity=0.383 Sum_probs=102.2
Q ss_pred CceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEEC
Q 002514 514 HKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDL 593 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 593 (913)
..|+++|||+|.|+ .+.++..-.+.++.|++|+|.+... ..+..+++|+.|||++|.++ .+..+-.++-+.++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 56888888888887 5667777788889999999988743 33778889999999999888 44555667888899999
Q ss_pred cCCccccccchhHhhcCCCcceEeccCCcccccC-CcccCCCCCcCEEeCCCCCCCccc
Q 002514 594 GRNALSGEIPTWIGESLPKLIVLSLMSNKFHGII-PFQLCHLPFIQILDLSSNNIPGII 651 (913)
Q Consensus 594 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~ 651 (913)
+.|.+. .+ ..+. .+-+|..||+++|+|.... -..++++|.|+++.|.+|++.+..
T Consensus 360 a~N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 999875 22 2333 4678889999999987542 356889999999999999998654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.2e-10 Score=121.47 Aligned_cols=133 Identities=30% Similarity=0.313 Sum_probs=57.7
Q ss_pred CceeEEEcCCCcccccCC--ccccccCCCcEEeCCCCcCCccCC--CCCCCCCCCCEEEcccCcccccCChh-hhcCCCC
Q 002514 514 HKLMYLDLSNNLLSGRLP--DCWLLFDRLGILDLANNNFSGKIP--DSMGSLPNIQILSLHNNRLTGELPST-LQNCLLL 588 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L 588 (913)
.+|++..|.++.... .+ .....|++++.||||.|-+..-.+ .-...+|+|+.|+++.|++.-...+. -..++.|
T Consensus 121 kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456666666655431 11 234455556666666555442111 12234555555555555554221111 1133445
Q ss_pred CEEECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcCEEeCCCCCC
Q 002514 589 KLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647 (913)
Q Consensus 589 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 647 (913)
+.|.|+.|.++-.--.++...+|+|+.|+|..|.....-......+..|+.|||++|++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 55555555554222222223445555555555532222222222333444444444444
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-10 Score=118.23 Aligned_cols=256 Identities=25% Similarity=0.250 Sum_probs=131.0
Q ss_pred CccccCCCCCCEEeCCCCCCCCC---CccchHHhhhccCcEEECCCC---CCCCCCCc-------cCCCCCCCCEEECCC
Q 002514 104 SPSLRKLQHLTYLDLSDNDFSGI---PIADFIGSLSSKLRHLDLGWA---GFAGSVPP-------QLGNLSNLQYLNLGY 170 (913)
Q Consensus 104 ~~~l~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~~L~~L~Ls~n---~~~~~~p~-------~l~~l~~L~~L~Ls~ 170 (913)
-+.+..+..+++++||+|.|... .+...+.+.+. |+..+++.- +....+|+ ++-.+++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~-L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKE-LREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhccc-ceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 45567788899999999988643 12334445555 788777743 12223443 334556777777777
Q ss_pred CcCcccCCCh----hhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccE
Q 002514 171 NDLLSVGNLL----HWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEF 246 (913)
Q Consensus 171 n~l~~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~ 246 (913)
|.+. |..+ ..+.+++.|++|.|.+|.+.... ...++. .|.+|. .+ ...... ++|++
T Consensus 102 NA~G--~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a--g~~l~~--al~~l~--~~-----------kk~~~~-~~Lrv 161 (382)
T KOG1909|consen 102 NAFG--PKGIRGLEELLSSCTDLEELYLNNCGLGPEA--GGRLGR--ALFELA--VN-----------KKAASK-PKLRV 161 (382)
T ss_pred cccC--ccchHHHHHHHHhccCHHHHhhhcCCCChhH--HHHHHH--HHHHHH--HH-----------hccCCC-cceEE
Confidence 7664 2222 23445555666666555543210 000000 000000 00 011122 56777
Q ss_pred EECCCCCCCCCcch---hHHhccCCCcEEEccCCccccc----cchhhcCCCCCcEEEccCCcCCCc----ccccccCCc
Q 002514 247 LDLSENNLTSSVYP---WLFNVSSNLVELGLSSNLLQGS----IPDAFEHMVSLQTLFLYSNELEGG----IPKFFGNMC 315 (913)
Q Consensus 247 L~Ls~n~l~~~~~~---~l~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~ 315 (913)
+...+|++...-.. ..+...+.|+.+.+..|.|... +...|..+++|++|||..|-++.. +...+..++
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 77777766532221 1223333466666666665421 234455666666666666665522 223344555
Q ss_pred ccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCCCCCCCCCCEEEccCCcCCcc----chhhhcCC
Q 002514 316 CLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGLSSLKSLYLGGNRLNGT----INQSLGRM 391 (913)
Q Consensus 316 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l 391 (913)
+|+.|++++|.+.......+.+.- -...|+|+.|.+.+|.++.. +...+...
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDAL------------------------KESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred hheeecccccccccccHHHHHHHH------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 666666666655543333332211 11245566666666665531 22334456
Q ss_pred CCCcEEEeeCCCC
Q 002514 392 YKLEKLSLGGNSL 404 (913)
Q Consensus 392 ~~L~~L~L~~n~l 404 (913)
+.|+.|+|++|++
T Consensus 298 ~dL~kLnLngN~l 310 (382)
T KOG1909|consen 298 PDLEKLNLNGNRL 310 (382)
T ss_pred hhhHHhcCCcccc
Confidence 6777777777776
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.1e-09 Score=105.06 Aligned_cols=80 Identities=33% Similarity=0.500 Sum_probs=15.6
Q ss_pred ceeEEEcCCCcccccCCcccc-ccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhh-hcCCCCCEEE
Q 002514 515 KLMYLDLSNNLLSGRLPDCWL-LFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTL-QNCLLLKLMD 592 (913)
Q Consensus 515 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ 592 (913)
.+++|+|.+|.|+. + +.++ .+.+|+.|++++|.+... +.+..++.|++|++++|+++. +++.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 45555555555542 1 1232 344555555555555532 134444555555555555542 22222 2344555555
Q ss_pred CcCCccc
Q 002514 593 LGRNALS 599 (913)
Q Consensus 593 Ls~N~l~ 599 (913)
+++|+|.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 5555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=5.5e-09 Score=100.18 Aligned_cols=112 Identities=29% Similarity=0.392 Sum_probs=45.8
Q ss_pred ccccCCCcEEeCCCCcCCccCCCCCC-CCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCC
Q 002514 534 WLLFDRLGILDLANNNFSGKIPDSMG-SLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPK 612 (913)
Q Consensus 534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 612 (913)
+.+...+++|+|.+|.|+.+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+|+ .++..+...+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 44566789999999999843 3565 578999999999999954 35888999999999999998 676665546999
Q ss_pred cceEeccCCcccccC-CcccCCCCCcCEEeCCCCCCCcc
Q 002514 613 LIVLSLMSNKFHGII-PFQLCHLPFIQILDLSSNNIPGI 650 (913)
Q Consensus 613 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ 650 (913)
|++|++++|+|...- -..+..+++|+.|+|.+|++...
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999999997642 24577899999999999999754
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=6.7e-09 Score=81.68 Aligned_cols=60 Identities=40% Similarity=0.502 Sum_probs=34.4
Q ss_pred cCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCcc
Q 002514 737 GLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNL 796 (913)
Q Consensus 737 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L 796 (913)
+|+.|++++|+++...+..|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555554445555556666666666666555555555666666666665543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.9e-09 Score=121.33 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=48.8
Q ss_pred eeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCccccc---CCcc-ccCCCCCCeE
Q 002514 714 VKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGG---IPSS-LSQLSGLSVM 789 (913)
Q Consensus 714 l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L 789 (913)
++.+++++|.+. .++..+..+..+..|+++.|++... ..+.....+..+.++.|.+... .+.. ......+...
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 456667777766 3335566666677777777776643 2244455566666666665521 1111 3445666666
Q ss_pred ECCCCcccccCC
Q 002514 790 DLSYNNLSGKIP 801 (913)
Q Consensus 790 ~ls~N~L~g~iP 801 (913)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 777776665443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.7e-09 Score=121.59 Aligned_cols=216 Identities=31% Similarity=0.354 Sum_probs=114.1
Q ss_pred CceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEEC
Q 002514 514 HKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDL 593 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 593 (913)
..++.+.+..|.+.. +-..+..+.+|+.|++.+|.|... ...+..+++|++|++++|.|+...+ +..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 445555566665542 223345555666666666666532 2224455566666666666653322 344445556666
Q ss_pred cCCccccccchhHhhcCCCcceEeccCCcccccCC-cccCCCCCcCEEeCCCCCCCcccchhhhhhhhhhhccccccccc
Q 002514 594 GRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIP-FQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLSVT 672 (913)
Q Consensus 594 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~~~~~~~~~ 672 (913)
++|.++ .++.. ..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-.. ..+
T Consensus 148 ~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~--~~~-------------- 207 (414)
T KOG0531|consen 148 SGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL--DLL-------------- 207 (414)
T ss_pred ccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--HHH--------------
Confidence 666555 33221 124555555555555554333 1 34455555555555555422111 111
Q ss_pred cccccccCCCCCccccCCCccccceeeeecccccccccccceeEEEcccCcCcccchhhhhccc--cCcEEEccCccccc
Q 002514 673 SNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLV--GLIAMNLSRNNLTG 750 (913)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~ 750 (913)
..+..+++..|.++-.-+ +..+. +|+.+++++|.+.
T Consensus 208 ---------------------------------------~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~- 245 (414)
T KOG0531|consen 208 ---------------------------------------KKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS- 245 (414)
T ss_pred ---------------------------------------HHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-
Confidence 111334666776663221 22222 3777888888877
Q ss_pred cCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCCccc
Q 002514 751 QITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLS 797 (913)
Q Consensus 751 ~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~L~ 797 (913)
.++..+..+..+..||+++|+++..- .+.....+..+....|.+.
T Consensus 246 ~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 33356677778888888888876442 2444566666777777665
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.2e-10 Score=109.40 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=11.3
Q ss_pred cccceeecCCCCcEEEEEcCC
Q 002514 73 EWIGVYCRNKTHHVYALDLQD 93 (913)
Q Consensus 73 ~w~gv~c~~~~~~v~~L~L~~ 93 (913)
+|.+..-+ ..-.+.+|+.+
T Consensus 127 Rfyr~~~d--e~lW~~lDl~~ 145 (419)
T KOG2120|consen 127 RFYRLASD--ESLWQTLDLTG 145 (419)
T ss_pred HHhhcccc--ccceeeeccCC
Confidence 56654432 34567788876
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1e-08 Score=80.66 Aligned_cols=61 Identities=39% Similarity=0.509 Sum_probs=56.9
Q ss_pred cceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcc
Q 002514 712 GLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRF 772 (913)
Q Consensus 712 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l 772 (913)
+.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578999999999977778999999999999999999999899999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-08 Score=122.54 Aligned_cols=251 Identities=24% Similarity=0.260 Sum_probs=122.9
Q ss_pred CCCEEeCCCCC--CCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCC
Q 002514 112 HLTYLDLSDND--FSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSL 189 (913)
Q Consensus 112 ~L~~L~Ls~n~--i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L 189 (913)
.|++|-+..|. +..+ ...++..+|. |++|||++|.-.+.+|..++.|.+||+|+++++.+.++|.. +.+++.|
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~-LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~---l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPL-LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG---LGNLKKL 620 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcc-eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH---HHHHHhh
Confidence 56676666664 4443 4455666776 77777777766667777777777777777777776655543 5666677
Q ss_pred cEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhH---Hhcc
Q 002514 190 RYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWL---FNVS 266 (913)
Q Consensus 190 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---~~~~ 266 (913)
.+|++..+..... ++.....+++|++|.+........... -.....+++|+.+....... .+...+ ..+.
T Consensus 621 ~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~---l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 621 IYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLL---LKELENLEHLENLSITISSV--LLLEDLLGMTRLR 693 (889)
T ss_pred heecccccccccc--ccchhhhcccccEEEeeccccccchhh---HHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence 7777776653331 234445577777777665441111000 01112234444444432221 011111 1111
Q ss_pred CCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccC------CcccceeEccCCCCCCchhHhhhhccC
Q 002514 267 SNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGN------MCCLNELVLCSNQLTGQLFEFIQNLSC 340 (913)
Q Consensus 267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~ 340 (913)
...+.+.+.++... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+.+....
T Consensus 694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~-- 769 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFA-- 769 (889)
T ss_pred HHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhcc--
Confidence 11223333232222 33445667777777777777665322222111 112222222222211 111222222
Q ss_pred CCCCCCccEEEccCCcCccCCCC-CCCCCCCCEEEccCCcCCc
Q 002514 341 GCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNG 382 (913)
Q Consensus 341 ~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~ 382 (913)
++|+.|.+..+.....+.. ...+..++.+.+..+.+.+
T Consensus 770 ----~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 770 ----PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred ----CcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 2777777776665443333 4444555554454444443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.2e-08 Score=122.47 Aligned_cols=109 Identities=38% Similarity=0.439 Sum_probs=60.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccC
Q 002514 107 LRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHL 186 (913)
Q Consensus 107 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l 186 (913)
|..++.|++|||++|.--+ .+|..|+.+-+ ||||+++++.+. .+|..+++|+.|.+||+..+...... ......+
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~-LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L 641 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVH-LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLEL 641 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhh-hhcccccCCCcc-ccchHHHHHHhhheeccccccccccc--cchhhhc
Confidence 5666777777777653322 26666666666 777777766666 66666777777777777665432111 1123446
Q ss_pred CCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEc
Q 002514 187 SSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLIL 220 (913)
Q Consensus 187 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 220 (913)
++||+|.+..............+.++.+|+.+..
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 6666666655542222222333444444444444
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.62 E-value=4.5e-08 Score=70.20 Aligned_cols=40 Identities=53% Similarity=1.023 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhcCc-CCCCCCCCCCCCCC-CCCCCcccceeec
Q 002514 39 DEEREALLSFKQSLV-DEHGFLSSWGSEDN-KSDCCEWIGVYCR 80 (913)
Q Consensus 39 ~~~~~~ll~~k~~~~-~~~~~~~~w~~~~~-~~~~c~w~gv~c~ 80 (913)
++|++||++||+++. +|.+.+.+|.. . ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 689999999999998 57789999984 2 2799999999995
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.5e-09 Score=102.34 Aligned_cols=183 Identities=25% Similarity=0.191 Sum_probs=102.0
Q ss_pred CCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCCcE
Q 002514 112 HLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRY 191 (913)
Q Consensus 112 ~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~ 191 (913)
.|++||||...|+...+...+..+.+ |+.|.+.++++.+.+-..+++-.+|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~k-Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------------------- 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSK-LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------------------- 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHh-hhhccccccccCcHHHHHHhccccceeecccccc-------------------
Confidence 45566666555554333334444444 5555555555555555555555555555555542
Q ss_pred EEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCC--CCCcchhHHhccCCC
Q 002514 192 LHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNL--TSSVYPWLFNVSSNL 269 (913)
Q Consensus 192 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~l~~~~~~L 269 (913)
--........+.+++.|..|++++|.+......+ ....-.++|+.|+++++.- ...-...+..-+++|
T Consensus 246 -------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 246 -------GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred -------ccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 2222233344556666666666666554433211 1122226677777776532 112223344455668
Q ss_pred cEEEccCC-ccccccchhhcCCCCCcEEEccCCcCCCccccc---ccCCcccceeEccCCC
Q 002514 270 VELGLSSN-LLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKF---FGNMCCLNELVLCSNQ 326 (913)
Q Consensus 270 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~ 326 (913)
.+|||++| .++......|.+++.|++|.++.|.. .+|.. +...|.|.+|++.++-
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88888876 34444445567788888888888753 45543 4567888888887763
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.3e-07 Score=94.17 Aligned_cols=221 Identities=21% Similarity=0.200 Sum_probs=122.7
Q ss_pred cCCCCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCcc
Q 002514 156 QLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDP 235 (913)
Q Consensus 156 ~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 235 (913)
.+.....++.|-+.++.|.+.......-...+.++++||.+|.+++-.++...+.++|.|+.|+++.|++...+... |
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l--p 117 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL--P 117 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC--c
Confidence 33444455566666666655544333345567888888888888876667777888888888888888876654321 0
Q ss_pred ccccCCCcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCc
Q 002514 236 LHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMC 315 (913)
Q Consensus 236 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 315 (913)
.. ..+|++|-|.+..+.-.-..++....+.+++|.++.|.+. .+.+..+.++... +
T Consensus 118 --~p-~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r--------------q~n~Dd~c~e~~s-------~ 173 (418)
T KOG2982|consen 118 --LP-LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR--------------QLNLDDNCIEDWS-------T 173 (418)
T ss_pred --cc-ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh--------------hhccccccccccc-------h
Confidence 11 2677888777766643222333333333566666555322 2333333333211 1
Q ss_pred ccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCCC--CCCCCCCCEEEccCCcCCcc-chhhhcCCC
Q 002514 316 CLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE--LGGLSSLKSLYLGGNRLNGT-INQSLGRMY 392 (913)
Q Consensus 316 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~ 392 (913)
.++.|.+-.|... .|...+..+..++++..+.+..|.+...-.. ...++.+.-|+|+.|++..- --+.+..++
T Consensus 174 ~v~tlh~~~c~~~----~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 174 EVLTLHQLPCLEQ----LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP 249 (418)
T ss_pred hhhhhhcCCcHHH----HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence 2333333222210 1111111111233777777777766543322 55566666778888777532 123566778
Q ss_pred CCcEEEeeCCCCcc
Q 002514 393 KLEKLSLGGNSLTG 406 (913)
Q Consensus 393 ~L~~L~L~~n~l~~ 406 (913)
+|..|.++++++..
T Consensus 250 ~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 250 QLVDLRVSENPLSD 263 (418)
T ss_pred hhheeeccCCcccc
Confidence 88888888887654
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=3.1e-08 Score=87.10 Aligned_cols=86 Identities=28% Similarity=0.333 Sum_probs=54.5
Q ss_pred eEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEECCCC
Q 002514 715 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYN 794 (913)
Q Consensus 715 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 794 (913)
+.|+|++|+|+ .+|.++..++.|+.||++.|.+. ..|.-+..|.++..||..+|.+- .||..+---+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 66777777777 66777777777777777777776 44555666777777777777765 45544322233334455666
Q ss_pred cccccCCCC
Q 002514 795 NLSGKIPSG 803 (913)
Q Consensus 795 ~L~g~iP~~ 803 (913)
++.+..|.+
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 666665554
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=8.5e-08 Score=106.17 Aligned_cols=82 Identities=29% Similarity=0.308 Sum_probs=41.9
Q ss_pred CceeEEEcCCCcccccCCc-cccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCC-hhhhcCCCCCEE
Q 002514 514 HKLMYLDLSNNLLSGRLPD-CWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELP-STLQNCLLLKLM 591 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L 591 (913)
+.|+.|||++|.+. .+|. ....+. |+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-- ..+..+..|+.|
T Consensus 209 ~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred ccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 55666666666665 2222 222233 66666666665522 234555666666666665553211 123444555666
Q ss_pred ECcCCccc
Q 002514 592 DLGRNALS 599 (913)
Q Consensus 592 ~Ls~N~l~ 599 (913)
.|.+|.+-
T Consensus 285 ~LeGNPl~ 292 (1096)
T KOG1859|consen 285 WLEGNPLC 292 (1096)
T ss_pred hhcCCccc
Confidence 66666554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=1.2e-07 Score=105.14 Aligned_cols=202 Identities=29% Similarity=0.246 Sum_probs=108.9
Q ss_pred CcEEECCCCCCCCCC-CccCCCCCCCCEEECCCCcCcccCCChhhhccC-CCCcEEEcCCccCCCCCChhHhhcCCCCCC
Q 002514 139 LRHLDLGWAGFAGSV-PPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHL-SSLRYLHLGHNNLSNSNDWPLVVYKLSSLT 216 (913)
Q Consensus 139 L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 216 (913)
++.|.+-.-.-.+.. |..|..+..|++|.|.++.+....+.. .+ ..|++|...+ .+... ...+..+
T Consensus 86 t~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~----~lr~qLe~LIC~~-Sl~Al---~~v~asc---- 153 (1096)
T KOG1859|consen 86 TKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQ----ELRHQLEKLICHN-SLDAL---RHVFASC---- 153 (1096)
T ss_pred heeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhH----HHHHhhhhhhhhc-cHHHH---HHHHHHh----
Confidence 555555433333332 677888889999999998876543322 11 1344443322 11111 1111110
Q ss_pred EEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhHHhccCCCcEEEccCCccccccchhhcCCCCCcEE
Q 002514 217 TLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTL 296 (913)
Q Consensus 217 ~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (913)
+-.+....+ . ..|.+.+.++|.+. .+..+ ..+.+.|+.|+|+.|+++.. +.+..+++|++|
T Consensus 154 -----ggd~~ns~~---------W-n~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhL 214 (1096)
T KOG1859|consen 154 -----GGDISNSPV---------W-NKLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHL 214 (1096)
T ss_pred -----ccccccchh---------h-hhHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhccccccc
Confidence 001111110 1 35666667777665 22223 23333477777777777643 367777777777
Q ss_pred EccCCcCCCccccc-ccCCcccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCCC--CCCCCCCCCEE
Q 002514 297 FLYSNELEGGIPKF-FGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIP--ELGGLSSLKSL 373 (913)
Q Consensus 297 ~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L 373 (913)
||++|.+. .+|.. ...+ +|+.|.+.+|.++. ...+.++. +|+.||+++|-+.+.-. .++.+..|+.|
T Consensus 215 DlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~Lk------sL~~LDlsyNll~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 215 DLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLK------SLYGLDLSYNLLSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred ccccchhc-cccccchhhh-hheeeeecccHHHh--hhhHHhhh------hhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence 77777776 34432 2223 47777777776652 12344444 77777777777664322 25566677777
Q ss_pred EccCCcCC
Q 002514 374 YLGGNRLN 381 (913)
Q Consensus 374 ~L~~n~l~ 381 (913)
+|.+|.+-
T Consensus 285 ~LeGNPl~ 292 (1096)
T KOG1859|consen 285 WLEGNPLC 292 (1096)
T ss_pred hhcCCccc
Confidence 77777664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=9e-07 Score=88.25 Aligned_cols=86 Identities=30% Similarity=0.430 Sum_probs=51.7
Q ss_pred CCcccceeEccCCCCCC--chhHhhhhccCCCCCCCccEEEccCCcCccCCCCC-CCCCCCCEEEccCCcCCccc-hhhh
Q 002514 313 NMCCLNELVLCSNQLTG--QLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPEL-GGLSSLKSLYLGGNRLNGTI-NQSL 388 (913)
Q Consensus 313 ~l~~L~~L~L~~n~l~~--~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l-~~l~~L~~L~L~~n~l~~~~-~~~l 388 (913)
..+.++.++|.+|.++. .+...+.+++ .|+.|+++.|.+...+..+ ....+|+.|-|.+..+...- ...+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP------~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLP------ALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCc------cceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 34566677777776653 3344455555 7777777777776555553 35567777777766554322 2234
Q ss_pred cCCCCCcEEEeeCCCC
Q 002514 389 GRMYKLEKLSLGGNSL 404 (913)
Q Consensus 389 ~~l~~L~~L~L~~n~l 404 (913)
..+|.++.|.++.|.+
T Consensus 143 ~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSL 158 (418)
T ss_pred hcchhhhhhhhccchh
Confidence 5566777777777643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=3.7e-07 Score=80.48 Aligned_cols=90 Identities=28% Similarity=0.437 Sum_probs=47.4
Q ss_pred CceeEEEcCCCcccccCCccc-cccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEE
Q 002514 514 HKLMYLDLSNNLLSGRLPDCW-LLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMD 592 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 592 (913)
..|+..+|++|.+.. .|..| ..++.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 445555666665552 23322 23345555566666555 44555555555555666555555 4444444455555555
Q ss_pred CcCCccccccchhHh
Q 002514 593 LGRNALSGEIPTWIG 607 (913)
Q Consensus 593 Ls~N~l~~~ip~~~~ 607 (913)
..+|.+. .||..++
T Consensus 130 s~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 130 SPENARA-EIDVDLF 143 (177)
T ss_pred CCCCccc-cCcHHHh
Confidence 5555554 4554433
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=1.6e-06 Score=85.41 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred CcEEEEEcCCCCCCCcc--eecCccccCCCCCCEEeCCCCCCCCC--Cccch-------HHhhhccCcEEECCCCCCCCC
Q 002514 84 HHVYALDLQDGSLKLKG--TILSPSLRKLQHLTYLDLSDNDFSGI--PIADF-------IGSLSSKLRHLDLGWAGFAGS 152 (913)
Q Consensus 84 ~~v~~L~L~~~~~~l~g--~~~~~~l~~l~~L~~L~Ls~n~i~~~--~~~~~-------~~~l~~~L~~L~Ls~n~~~~~ 152 (913)
..++.+|||||.++-.. .+ ...+++-++|+..++|.--.... .+++. +-.+|+ |+..+||.|.|...
T Consensus 30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~-l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR-LQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc-ceeeeccccccCcc
Confidence 45667777775443211 12 34455666677776665321110 12222 223344 66666666666544
Q ss_pred CCcc----CCCCCCCCEEECCCCcCc
Q 002514 153 VPPQ----LGNLSNLQYLNLGYNDLL 174 (913)
Q Consensus 153 ~p~~----l~~l~~L~~L~Ls~n~l~ 174 (913)
.|+. |+.-+.|++|.+++|.+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCC
Confidence 4432 234455666666666554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=2.1e-06 Score=84.50 Aligned_cols=93 Identities=24% Similarity=0.241 Sum_probs=49.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCC---ccchHHhhhccCcEEECCCCCC---CCCCC-------ccCCCCCCCCEEECCCCc
Q 002514 106 SLRKLQHLTYLDLSDNDFSGIP---IADFIGSLSSKLRHLDLGWAGF---AGSVP-------PQLGNLSNLQYLNLGYND 172 (913)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~~l~~~L~~L~Ls~n~~---~~~~p-------~~l~~l~~L~~L~Ls~n~ 172 (913)
.+..+..+..+|||+|.|.... +...|.+-.+ |+..+++.-.. ...+| .++.+|++|+..+||.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~-L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRN-LRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcc-eeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3555788888899998887531 2223333334 77777764321 11222 234566777777777766
Q ss_pred Ccc--cCCChhhhccCCCCcEEEcCCccC
Q 002514 173 LLS--VGNLLHWLYHLSSLRYLHLGHNNL 199 (913)
Q Consensus 173 l~~--l~~~~~~l~~l~~L~~L~Ls~n~l 199 (913)
+.. .+.....+++-+.|+||.+++|.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 541 111112344555555555555544
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.83 E-value=9.7e-07 Score=92.32 Aligned_cols=319 Identities=20% Similarity=0.115 Sum_probs=167.2
Q ss_pred cccceeecCCCCcEEEEEcCCCCCCCcceecCccccCC-CCCCEEeCCCCCCCC-CCccchHHhhhccCcEEECCCCCC-
Q 002514 73 EWIGVYCRNKTHHVYALDLQDGSLKLKGTILSPSLRKL-QHLTYLDLSDNDFSG-IPIADFIGSLSSKLRHLDLGWAGF- 149 (913)
Q Consensus 73 ~w~gv~c~~~~~~v~~L~L~~~~~~l~g~~~~~~l~~l-~~L~~L~Ls~n~i~~-~~~~~~~~~l~~~L~~L~Ls~n~~- 149 (913)
.|++-.-+ ...-+++||..-.....|.++..-+..+ ..|+.|.++++.=.+ .+.-.+....|+ +++|++.+|..
T Consensus 101 ~~n~~AlD--~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cpn-IehL~l~gc~~i 177 (483)
T KOG4341|consen 101 MWNKLALD--GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPN-IEHLALYGCKKI 177 (483)
T ss_pred Hhhhhhhc--cccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCc-hhhhhhhcceec
Confidence 46653322 2345566665422333333323333333 367778887765322 223445555666 78887777752
Q ss_pred CCCCCccC-CCCCCCCEEECCCCc-CcccCCChh-hhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCC
Q 002514 150 AGSVPPQL-GNLSNLQYLNLGYND-LLSVGNLLH-WLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLP 226 (913)
Q Consensus 150 ~~~~p~~l-~~l~~L~~L~Ls~n~-l~~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~ 226 (913)
+...-..+ ..+++|++|+|..|. ++.. .+. ....+++|++|+++.+.--....+.....++..++.+.+.||.-.
T Consensus 178 Td~s~~sla~~C~~l~~l~L~~c~~iT~~--~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 178 TDSSLLSLARYCRKLRHLNLHSCSSITDV--SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred cHHHHHHHHHhcchhhhhhhcccchhHHH--HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 21111122 357788888887753 2211 111 234577888888887753332344455566666777766665322
Q ss_pred CCCCCCCccccccCCCcccEEECCCCC-CCCCcchhHHhccCCCcEEEccCCccccc-cchhh-cCCCCCcEEEccCCc-
Q 002514 227 PFFPSADDPLHLNSSKSLEFLDLSENN-LTSSVYPWLFNVSSNLVELGLSSNLLQGS-IPDAF-EHMVSLQTLFLYSNE- 302 (913)
Q Consensus 227 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~Ls~n~- 302 (913)
+... + .........+..+++..+. +++.-.-.+......|+.|+.+++...+. .-.++ .+..+|+.|.++.++
T Consensus 256 ~le~--l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 256 ELEA--L-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred cHHH--H-HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 2100 0 0111111345555554543 33322222334444577888777654322 12223 366788888887775
Q ss_pred CCCcccccc-cCCcccceeEccCCCCCCchhHhhhhccCCCCCCCccEEEccCCcCccCC-----CC-CCCCCCCCEEEc
Q 002514 303 LEGGIPKFF-GNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPI-----PE-LGGLSSLKSLYL 375 (913)
Q Consensus 303 l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~-----~~-l~~l~~L~~L~L 375 (913)
++..-...+ .+.+.|+.+++..+...-.. .+..+.. ..+.|+++.+++|...... .. -.....|+.+.+
T Consensus 333 fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls~--~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 333 FSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLSR--NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred hhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhcc--CCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 222222222 35677888888777543211 2332221 2237888888877654322 11 234567888888
Q ss_pred cCCcCC-ccchhhhcCCCCCcEEEeeCCC
Q 002514 376 GGNRLN-GTINQSLGRMYKLEKLSLGGNS 403 (913)
Q Consensus 376 ~~n~l~-~~~~~~l~~l~~L~~L~L~~n~ 403 (913)
+++... +..-+.+..+++|+.+++-+++
T Consensus 409 ~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 409 DNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCCCCchHHHHHHHhhCcccceeeeechh
Confidence 888543 3344556677888888887775
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=7.1e-05 Score=80.91 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCCcceEeccCC-cccccCCcccCCCCC
Q 002514 558 MGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSN-KFHGIIPFQLCHLPF 636 (913)
Q Consensus 558 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~ 636 (913)
+..+.+++.|++++|.++ .+|. --.+|+.|++++|.-...+|..+. ++|+.|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cc
Confidence 344678889999998777 5552 223688899888654446776543 57888888888 443 344 34
Q ss_pred cCEEeCCCCCC
Q 002514 637 IQILDLSSNNI 647 (913)
Q Consensus 637 L~~L~Ls~N~l 647 (913)
|+.|++++|..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 66777776554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=6.6e-06 Score=96.60 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=98.2
Q ss_pred cCcEEECCCCCC-CCCCCccCC-CCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCC
Q 002514 138 KLRHLDLGWAGF-AGSVPPQLG-NLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSL 215 (913)
Q Consensus 138 ~L~~L~Ls~n~~-~~~~p~~l~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 215 (913)
+|++||+++... ....|..++ .||+|++|.+++-.+..- .....+.++++|+.||+|+.+++.+ .++++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 488999887643 233344444 478899998887665421 1123456788999999999888764 578888899
Q ss_pred CEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCc--chh---HHhccCCCcEEEccCCccccccchhh-cC
Q 002514 216 TTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSV--YPW---LFNVSSNLVELGLSSNLLQGSIPDAF-EH 289 (913)
Q Consensus 216 ~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~---l~~~~~~L~~L~L~~n~l~~~~~~~l-~~ 289 (913)
+.|.+.+-.+..... ...+++. ++|+.||+|........ ... ....+++|+.||.++..+...+-+.+ ..
T Consensus 198 q~L~mrnLe~e~~~~---l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQD---LIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred HHHhccCCCCCchhh---HHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 988888877654321 1345555 89999999887654321 111 12234569999999888776554443 34
Q ss_pred CCCCcEEEc
Q 002514 290 MVSLQTLFL 298 (913)
Q Consensus 290 l~~L~~L~L 298 (913)
.++|+.+..
T Consensus 274 H~~L~~i~~ 282 (699)
T KOG3665|consen 274 HPNLQQIAA 282 (699)
T ss_pred CccHhhhhh
Confidence 455555543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=8.5e-05 Score=80.28 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=92.5
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCC-cCcccCCChhhhc
Q 002514 106 SLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYN-DLLSVGNLLHWLY 184 (913)
Q Consensus 106 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n-~l~~l~~~~~~l~ 184 (913)
.+..++++++|++++|.++.. | .+|.+|++|++++|.-...+|..+ .++|++|++++| .+..+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL--P----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL--P----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc--C----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------
Confidence 356678899999999988874 4 356669999999876555677655 368999999998 554333
Q ss_pred cCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhHHh
Q 002514 185 HLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFN 264 (913)
Q Consensus 185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 264 (913)
.+|++|+++.+....+..+|. +|+.|.+.+++....... + ....++|++|++++|... ..|+.
T Consensus 112 --~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~l---p--~~LPsSLk~L~Is~c~~i-~LP~~--- 174 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARI---D--NLISPSLKTLSLTGCSNI-ILPEK--- 174 (426)
T ss_pred --cccceEEeCCCCCcccccCcc------hHhheecccccccccccc---c--cccCCcccEEEecCCCcc-cCccc---
Confidence 458888888776655444444 466777654331110000 0 012268999999988765 23332
Q ss_pred ccCCCcEEEccCCc
Q 002514 265 VSSNLVELGLSSNL 278 (913)
Q Consensus 265 ~~~~L~~L~L~~n~ 278 (913)
++.+|+.|+++.+.
T Consensus 175 LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 LPESLQSITLHIEQ 188 (426)
T ss_pred ccccCcEEEecccc
Confidence 33569999998764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=3.6e-05 Score=55.23 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=13.3
Q ss_pred CcEEEccCccccccCCcccccCCCCCEeeCcCCccc
Q 002514 738 LIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFF 773 (913)
Q Consensus 738 L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 773 (913)
|++|++++|+|+ .+|..++++++|+.||+++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 334444444444 22333444444444444444443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.59 E-value=6.1e-05 Score=54.04 Aligned_cols=37 Identities=35% Similarity=0.582 Sum_probs=32.3
Q ss_pred ceeEEEcccCcCcccchhhhhccccCcEEEccCccccc
Q 002514 713 LVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG 750 (913)
Q Consensus 713 ~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 750 (913)
+|+.|+|++|+|+ .+|..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5789999999999 678789999999999999999984
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.9e-05 Score=90.23 Aligned_cols=160 Identities=20% Similarity=0.227 Sum_probs=105.5
Q ss_pred CCCCEEeCCCCCCCCCCccchHHh-hhccCcEEECCCCCCCCC-CCccCCCCCCCCEEECCCCcCcccCCChhhhccCCC
Q 002514 111 QHLTYLDLSDNDFSGIPIADFIGS-LSSKLRHLDLGWAGFAGS-VPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSS 188 (913)
Q Consensus 111 ~~L~~L~Ls~n~i~~~~~~~~~~~-l~~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~ 188 (913)
.+|++||+++...-...-|..++. +|. |+.|.+++-.+... .-....++++|..||+|+++++.+ ..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPs-L~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPS-LRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcc-cceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhcccc
Confidence 578888888865443334555555 455 88888887665422 223346788888888888888755 34888888
Q ss_pred CcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCC-CCCccccccCCCcccEEECCCCCCCCCcchhHHhccC
Q 002514 189 LRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFP-SADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSS 267 (913)
Q Consensus 189 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~~~ 267 (913)
|+.|.+.+-.+....+ ...+.+|++|+.||+|......... ....-+....+|+|+.||.|++.+...+.+.+....+
T Consensus 197 Lq~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 8888888877765432 3456778889999988765544321 0000122334699999999999988777776666555
Q ss_pred CCcEEEccC
Q 002514 268 NLVELGLSS 276 (913)
Q Consensus 268 ~L~~L~L~~ 276 (913)
+|+.+..-+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 566555433
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=1.5e-05 Score=83.58 Aligned_cols=309 Identities=18% Similarity=0.095 Sum_probs=187.3
Q ss_pred CcEEEEEcCCCCCCCcceecCccccCCCCCCEEeCCCCC-CCCCCccchHHhhhccCcEEECCCCC-CCCCCCc-cCCCC
Q 002514 84 HHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDND-FSGIPIADFIGSLSSKLRHLDLGWAG-FAGSVPP-QLGNL 160 (913)
Q Consensus 84 ~~v~~L~L~~~~~~l~g~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~~L~~L~Ls~n~-~~~~~p~-~l~~l 160 (913)
++.++|++.|... ....-+-..-.++++++.|++.++. +++. .-..+.+.-++|++|+|..|. ++...-. -...+
T Consensus 138 g~lk~LSlrG~r~-v~~sslrt~~~~CpnIehL~l~gc~~iTd~-s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRA-VGDSSLRTFASNCPNIEHLALYGCKKITDS-SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccc-CCcchhhHHhhhCCchhhhhhhcceeccHH-HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 6788888887221 1111113345688999999999875 4443 223333333349999999853 3333222 23568
Q ss_pred CCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccC
Q 002514 161 SNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNS 240 (913)
Q Consensus 161 ~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 240 (913)
++|++|++++|.-.+-.+.-.....+..++.+.+.++.-.....+...-+.+..+..+++..|....... ...+...
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---~~~i~~~ 292 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---LWLIACG 292 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH---HHHHhhh
Confidence 9999999999963322232234566777888877776544333333344456667777777764322211 0122333
Q ss_pred CCcccEEECCCCCC-CCCcchhHHhccCCCcEEEccCCc-cccccchhhc-CCCCCcEEEccCCcCC--CcccccccCCc
Q 002514 241 SKSLEFLDLSENNL-TSSVYPWLFNVSSNLVELGLSSNL-LQGSIPDAFE-HMVSLQTLFLYSNELE--GGIPKFFGNMC 315 (913)
Q Consensus 241 l~~L~~L~Ls~n~l-~~~~~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~l~--~~~p~~l~~l~ 315 (913)
+..|+.|+.+++.. ++.....+.....+|+.|-++.|+ ++..-...++ +.+.|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 47899999887644 444445566677789999999986 3322222333 6788999999887643 22223335788
Q ss_pred ccceeEccCCCC-CCchhHhhhhccCCCCCCCccEEEccCCcCccC--CCCCCCCCCCCEEEccCCcCCc--cchhhhcC
Q 002514 316 CLNELVLCSNQL-TGQLFEFIQNLSCGCAKNSLESLDLSANAVTGP--IPELGGLSSLKSLYLGGNRLNG--TINQSLGR 390 (913)
Q Consensus 316 ~L~~L~L~~n~l-~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~--~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~ 390 (913)
.|+.+.++++.. ++.....+... .+....|+.+.++++..... ...+..+++|+.+++.+++-.. .+...-.+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~--~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSS--SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhc--cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 999999998854 32211122221 23345899999999987532 2227788999999998885322 22233456
Q ss_pred CCCCcEEEe
Q 002514 391 MYKLEKLSL 399 (913)
Q Consensus 391 l~~L~~L~L 399 (913)
+|++++..+
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 788776654
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00036 Score=66.49 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=29.4
Q ss_pred CcEEEccCCccccccchhhcCCCCCcEEEccCCcCCCcccccccCCcccceeEccCCCC
Q 002514 269 LVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQL 327 (913)
Q Consensus 269 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 327 (913)
...+||++|.+... +.|..++.|.+|.+++|+|+.+.|..-.-+++|+.|.+.+|++
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 45555555555421 2355555566666666666544444333444555555555544
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00016 Score=68.74 Aligned_cols=82 Identities=30% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCCcEE
Q 002514 113 LTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYL 192 (913)
Q Consensus 113 L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L 192 (913)
...+||++|.+... ..+..+++ |.+|.|++|+|+..-|.--.-+++|++|.|.+|.+.++... ..+..+++|++|
T Consensus 44 ~d~iDLtdNdl~~l---~~lp~l~r-L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL---DNLPHLPR-LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYL 118 (233)
T ss_pred cceecccccchhhc---ccCCCccc-cceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCcccee
Confidence 34455555554432 11223333 55555555555433333222344455555555554433221 113334444444
Q ss_pred EcCCccC
Q 002514 193 HLGHNNL 199 (913)
Q Consensus 193 ~Ls~n~l 199 (913)
.+-+|..
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 4444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00019 Score=71.43 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=61.5
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCC--CCCCCCCccCCCCCCCCEEECCCCcCcccCCChhh
Q 002514 105 PSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWA--GFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHW 182 (913)
Q Consensus 105 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 182 (913)
.-...+..|+.|++.+..++.. ..+-.+++ |++|.++.| ++.+.++.-...+++|++|++++|++..+ ..+..
T Consensus 37 gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~-LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-stl~p 111 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL---TNFPKLPK-LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-STLRP 111 (260)
T ss_pred cccccccchhhhhhhccceeec---ccCCCcch-hhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-cccch
Confidence 3334444555555555554432 11223455 888888888 55666665556668888888888877642 22333
Q ss_pred hccCCCCcEEEcCCccCCCCCChhH-hhcCCCCCCEEE
Q 002514 183 LYHLSSLRYLHLGHNNLSNSNDWPL-VVYKLSSLTTLI 219 (913)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~l~~L~~L~ 219 (913)
+..+.+|..|++.+|..+....-.. .+.-+++|++|+
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 5666667777777766554422222 233345555544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.81 E-value=0.0037 Score=57.63 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred cccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCEEECcCCccccccchhHhhcCCC
Q 002514 533 CWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPK 612 (913)
Q Consensus 533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~ 612 (913)
+|.++.+|+.+.+.. .+.......|..+++|+.+.+.++ +...-...|.++.+++.+.+.+ .+. .++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 344444555555442 333333344555555555555543 4333334455555555555543 222 344444434556
Q ss_pred cceEeccCCcccccCCcccCCCCCcCEEeCCCCCCCcccchhhhhhhh
Q 002514 613 LIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTA 660 (913)
Q Consensus 613 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 660 (913)
|+.+++..+ +.......+.+. .|+.+.+.. .+..+...+|.++.+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 666666543 433344455554 666666554 333344445554443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.80 E-value=0.0029 Score=58.32 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=67.6
Q ss_pred ccCCceeEEEcCCCcccccCCccccccCCCcEEeCCCCcCCccCCCCCCCCCCCCEEEcccCcccccCChhhhcCCCCCE
Q 002514 511 ISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKL 590 (913)
Q Consensus 511 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 590 (913)
..+++|+.+.+.+ .+...-...|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3346788888875 465566677888888999999875 6655566788888899999976 544455567888999999
Q ss_pred EECcCCccccccchhHhhcCCCcceEeccCCcccccCCcccCCCCCcC
Q 002514 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQ 638 (913)
Q Consensus 591 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 638 (913)
+++..+ +. .++...+.++ +++.+.+.. .+.......|.++++|+
T Consensus 86 i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 999776 54 6777766666 888888876 45545566777776653
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.0017 Score=64.90 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCCCCCCCCCCCCcccc
Q 002514 158 GNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLH 237 (913)
Q Consensus 158 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 237 (913)
..+..|+.|.+.+..++++.. +-.+++|++|.++.|......++.....++++|++|++++|++...... ..
T Consensus 40 d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl---~p- 111 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL---RP- 111 (260)
T ss_pred ccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc---ch-
Confidence 344555555555555543333 4455666666666664443334444445556666666666665432111 11
Q ss_pred ccCCCcccEEECCCCCCC
Q 002514 238 LNSSKSLEFLDLSENNLT 255 (913)
Q Consensus 238 ~~~l~~L~~L~Ls~n~l~ 255 (913)
...+++|..|++..|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 122255666666665544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00024 Score=70.77 Aligned_cols=103 Identities=21% Similarity=0.167 Sum_probs=54.6
Q ss_pred CcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEE
Q 002514 139 LRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTL 218 (913)
Q Consensus 139 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 218 (913)
.+.|++-+|.+.+. ....+|+.|++|.||-|.|+++.. +..+++|++|+|..|.|.++.+ ...+.++++|+.|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~L 93 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRTL 93 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhhH
Confidence 44445555544421 112456666666666666654433 6667777777777777666533 3445666666666
Q ss_pred EccCCCCCCCCCCCCccccccCCCcccEEE
Q 002514 219 ILEGCDLPPFFPSADDPLHLNSSKSLEFLD 248 (913)
Q Consensus 219 ~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~ 248 (913)
.|..|.-.+..+..........+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666665544433222122223335555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.00048 Score=68.65 Aligned_cols=103 Identities=25% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCCCCEEeCCCCCCCCCCccchHHhhhccCcEEECCCCCCCCCCCccCCCCCCCCEEECCCCcCcccCCChhhhccCCCC
Q 002514 110 LQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSL 189 (913)
Q Consensus 110 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L 189 (913)
+.+.+.|++-++.++++ ....+++. |++|.||-|.|+..- .+..|++|+.|.|..|.|.++.. +..+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~-lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPL-LEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhccc-ceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHH-HHHHhcCchh
Confidence 34455566666666554 22344555 666666666665332 25667777777777776665432 3457788888
Q ss_pred cEEEcCCccCCCC---CChhHhhcCCCCCCEEE
Q 002514 190 RYLHLGHNNLSNS---NDWPLVVYKLSSLTTLI 219 (913)
Q Consensus 190 ~~L~Ls~n~l~~~---~~~~~~l~~l~~L~~L~ 219 (913)
+.|-|..|.-.+. ..-...+..||+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888887765443 12244577788888886
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.56 E-value=0.0046 Score=36.82 Aligned_cols=18 Identities=56% Similarity=0.888 Sum_probs=8.1
Q ss_pred CCEeeCcCCcccccCCccc
Q 002514 762 LDFLDLSRNRFFGGIPSSL 780 (913)
Q Consensus 762 L~~LdLs~N~l~~~ip~~l 780 (913)
|+.|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.40 E-value=0.0051 Score=71.31 Aligned_cols=118 Identities=26% Similarity=0.181 Sum_probs=60.0
Q ss_pred cCCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCC-CCCCCCCCCCccccccCCCcccEEECCCCC-CCCCcchhH
Q 002514 185 HLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGC-DLPPFFPSADDPLHLNSSKSLEFLDLSENN-LTSSVYPWL 262 (913)
Q Consensus 185 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l 262 (913)
.++.|+.|.+..+.-.....+......++.|+.|+++++ ......+... ......+++|+.|+++++. +++.....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL-LLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-hhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 356666666665533322224455556666666666653 2211111100 1123333667777777666 554444555
Q ss_pred HhccCCCcEEEccCCc-cccccchh-hcCCCCCcEEEccCCcC
Q 002514 263 FNVSSNLVELGLSSNL-LQGSIPDA-FEHMVSLQTLFLYSNEL 303 (913)
Q Consensus 263 ~~~~~~L~~L~L~~n~-l~~~~~~~-l~~l~~L~~L~Ls~n~l 303 (913)
...+++|++|.+.+|. ++...-.. ...++.|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 5545557777766665 34322222 23566677777766554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.39 E-value=0.0067 Score=70.31 Aligned_cols=137 Identities=22% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCCCCEEECCCCcCcccCCChhhhccCCCCcEEEcCCc-cCCCC--CChhHhhcCCCCCCEEEccCCCC-CCCCCCCCc
Q 002514 159 NLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLHLGHN-NLSNS--NDWPLVVYKLSSLTTLILEGCDL-PPFFPSADD 234 (913)
Q Consensus 159 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~ 234 (913)
.++.|+.|.+..+.-.......+....++.|+.|+++++ ..... .........+++|+.|+++.+.. +...-
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l---- 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL---- 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH----
Confidence 357777777776642211112344566777777777762 11111 11223444567778888877763 32221
Q ss_pred cccccCCCcccEEECCCCC-CCCCcchhHHhccCCCcEEEccCCccccc--cchhhcCCCCCcEEEcc
Q 002514 235 PLHLNSSKSLEFLDLSENN-LTSSVYPWLFNVSSNLVELGLSSNLLQGS--IPDAFEHMVSLQTLFLY 299 (913)
Q Consensus 235 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls 299 (913)
..+...+++|++|.+..+. +++.-...+....+.|++|++++|..... +.....++++++.|.+.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 2333334788888877776 56555555666666688888887765321 22234456666665543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.28 E-value=9.3e-05 Score=83.31 Aligned_cols=66 Identities=27% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCEEEccCCcCCcc----chhhhcCCCCCcEEEeeCCCCccccChhhhhccccccccccEEEcccccCCCC
Q 002514 370 LKSLYLGGNRLNGT----INQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDT 436 (913)
Q Consensus 370 L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~Ls~n~i~~~ 436 (913)
+..+++..+.+.+. ++..+...+.++.++++.|......+.........-. .++.++++.|.++..
T Consensus 378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL 447 (478)
T ss_pred cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence 45555555554432 2333445666777777777655444433333333222 344455555555433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.0089 Score=35.57 Aligned_cols=19 Identities=47% Similarity=0.552 Sum_probs=9.8
Q ss_pred CcEEEccCccccccCCcccc
Q 002514 738 LIAMNLSRNNLTGQITPKIS 757 (913)
Q Consensus 738 L~~L~Ls~N~l~~~ip~~l~ 757 (913)
|++|||++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.94 E-value=0.0021 Score=72.55 Aligned_cols=193 Identities=25% Similarity=0.219 Sum_probs=91.6
Q ss_pred CCcEEEcCCccCCCC--CChhHhhcCCCCCCEEEccCCCCCCCCCCCCccccccCCCcccEEECCCCCCCCCcchhHHhc
Q 002514 188 SLRYLHLGHNNLSNS--NDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNV 265 (913)
Q Consensus 188 ~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~ 265 (913)
.+.+|.+.+|.+... ..+...+..++.|+.|++++|.+.+.........+...-..+++|++..|.+++.-..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~----- 162 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA----- 162 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH-----
Confidence 377777777777653 2334445556666666666665552211100000000002333444444433322111
Q ss_pred cCCCcEEEccCCccccccchhhcCCCCCcEEEccCCcCCC----ccccc----ccCCcccceeEccCCCCCCchhH----
Q 002514 266 SSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEG----GIPKF----FGNMCCLNELVLCSNQLTGQLFE---- 333 (913)
Q Consensus 266 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~----l~~l~~L~~L~L~~n~l~~~~~~---- 333 (913)
.+.+.+.....++.++++.|.+.. .++.. +....++++|.+.+|.++.....
T Consensus 163 ----------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~ 226 (478)
T KOG4308|consen 163 ----------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE 226 (478)
T ss_pred ----------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH
Confidence 123334445555555555554420 11112 22455677777777766532221
Q ss_pred hhhhccCCCCCCCccEEEccCCcCccC-----CCCCCCC-CCCCEEEccCCcCCccc----hhhhcCCCCCcEEEeeCCC
Q 002514 334 FIQNLSCGCAKNSLESLDLSANAVTGP-----IPELGGL-SSLKSLYLGGNRLNGTI----NQSLGRMYKLEKLSLGGNS 403 (913)
Q Consensus 334 ~l~~l~~~~~~~~L~~L~Ls~n~l~~~-----~~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~ 403 (913)
.+...+ ..+..+++.+|.+.+. .|.+..+ ..+++++++.|.++... ...+..++.++++.++.|.
T Consensus 227 ~l~~~~-----~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 227 VLASGE-----SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHhccc-----hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 111111 1255566666666532 1223444 56677777777766432 3344455667777777776
Q ss_pred Ccc
Q 002514 404 LTG 406 (913)
Q Consensus 404 l~~ 406 (913)
+..
T Consensus 302 l~~ 304 (478)
T KOG4308|consen 302 LTD 304 (478)
T ss_pred ccc
Confidence 653
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.69 E-value=0.15 Score=28.07 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=4.5
Q ss_pred CCCEEECCCCcCc
Q 002514 162 NLQYLNLGYNDLL 174 (913)
Q Consensus 162 ~L~~L~Ls~n~l~ 174 (913)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.77 E-value=0.021 Score=55.85 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=70.4
Q ss_pred cceeEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccccCCccccCCCCCCeEEC
Q 002514 712 GLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDL 791 (913)
Q Consensus 712 ~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 791 (913)
...+.||++.|++. ..-..++-++.+..|+++.|++. -.|..++++..+..+++-.|..+ ..|.++.+++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34588999999987 44556777888899999999988 67888999999999999999988 77899999999999999
Q ss_pred CCCccc
Q 002514 792 SYNNLS 797 (913)
Q Consensus 792 s~N~L~ 797 (913)
-.|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 998854
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.52 E-value=0.059 Score=52.82 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=51.0
Q ss_pred eEEEcccCcCcccchhhhhccccCcEEEccCccccccCCcccccCCCCCEeeCcCCcccc
Q 002514 715 KMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFG 774 (913)
Q Consensus 715 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~ 774 (913)
..||+|.|++. ..|..++++..++.+++.+|..+ ..|.++++++.++.+++-.|.++-
T Consensus 68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence 67889999888 78899999999999999888887 678999999999999999998763
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.85 E-value=0.62 Score=28.86 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=12.3
Q ss_pred CCCCEEECcCCccccccchhHh
Q 002514 586 LLLKLMDLGRNALSGEIPTWIG 607 (913)
Q Consensus 586 ~~L~~L~Ls~N~l~~~ip~~~~ 607 (913)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.85 E-value=0.62 Score=28.86 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=12.3
Q ss_pred CCCCEEECcCCccccccchhHh
Q 002514 586 LLLKLMDLGRNALSGEIPTWIG 607 (913)
Q Consensus 586 ~~L~~L~Ls~N~l~~~ip~~~~ 607 (913)
++|+.|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.55 E-value=0.85 Score=28.23 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=7.5
Q ss_pred CCCCEeeCcCCccc
Q 002514 760 KSLDFLDLSRNRFF 773 (913)
Q Consensus 760 ~~L~~LdLs~N~l~ 773 (913)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.55 E-value=0.85 Score=28.23 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=7.5
Q ss_pred CCCCEeeCcCCccc
Q 002514 760 KSLDFLDLSRNRFF 773 (913)
Q Consensus 760 ~~L~~LdLs~N~l~ 773 (913)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.30 E-value=0.24 Score=30.10 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=5.7
Q ss_pred CCCEeeCcCCcccc
Q 002514 761 SLDFLDLSRNRFFG 774 (913)
Q Consensus 761 ~L~~LdLs~N~l~~ 774 (913)
+|++|||++|++++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44455555554443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.23 E-value=0.71 Score=27.96 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=8.6
Q ss_pred ceeEEEcccCcCcccchhh
Q 002514 713 LVKMLDLSSNKLGGEVPEE 731 (913)
Q Consensus 713 ~l~~L~Ls~N~l~~~ip~~ 731 (913)
+|+.|+|++|+|++.....
T Consensus 3 ~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASA 21 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHH
Confidence 3455555555555444433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=0.43 Score=46.20 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=40.3
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEECcCCcccccc-chhHhhcCCCcceEeccCC-cccccCCcccCCCCCcCEEe
Q 002514 564 IQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEI-PTWIGESLPKLIVLSLMSN-KFHGIIPFQLCHLPFIQILD 641 (913)
Q Consensus 564 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~ 641 (913)
++.++-++..|..+--+.+.+++.++.|.+.+|+--+.. -..++...++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555555544455555555666666555422111 1112223456666666655 34443334455556666655
Q ss_pred CCC
Q 002514 642 LSS 644 (913)
Q Consensus 642 Ls~ 644 (913)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.50 E-value=0.72 Score=44.70 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=24.4
Q ss_pred CCCCCEEEccCC-cCCccchhhhcCCCCCcEEEeeCC
Q 002514 367 LSSLKSLYLGGN-RLNGTINQSLGRMYKLEKLSLGGN 402 (913)
Q Consensus 367 l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n 402 (913)
.++|+.|++++| +|++..-..+..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 467777777776 566555556677777777776553
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.75 E-value=3.9 Score=25.44 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=7.7
Q ss_pred CCCCEEECCCCcCc
Q 002514 161 SNLQYLNLGYNDLL 174 (913)
Q Consensus 161 ~~L~~L~Ls~n~l~ 174 (913)
++|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 88
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=65.02 E-value=4.8 Score=37.04 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=5.0
Q ss_pred hhhcccccc
Q 002514 886 YNFLTGIEN 894 (913)
Q Consensus 886 ~~~~~~~~~ 894 (913)
..|++.-..
T Consensus 80 tdfidSdGk 88 (154)
T PF04478_consen 80 TDFIDSDGK 88 (154)
T ss_pred CccccCCCc
Confidence 567765443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.77 E-value=7.3 Score=24.64 Aligned_cols=14 Identities=50% Similarity=0.475 Sum_probs=8.8
Q ss_pred CCCCEeeCcCCccc
Q 002514 760 KSLDFLDLSRNRFF 773 (913)
Q Consensus 760 ~~L~~LdLs~N~l~ 773 (913)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.54 E-value=51 Score=36.66 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=55.6
Q ss_pred CCcEEEccCCcCCCccccc--ccCCcccceeEccCCCCC-----CchhHhhhhccCCCCCCCccEEEccCCcCccCCCC-
Q 002514 292 SLQTLFLYSNELEGGIPKF--FGNMCCLNELVLCSNQLT-----GQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE- 363 (913)
Q Consensus 292 ~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~- 363 (913)
.+++|.+..|.+.+..-.. +..-+..+.+++.+-... +.......... ....-++.+.++.|........
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~--~~~g~l~el~ls~~~lka~l~s~ 432 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKS--RTHGVLAELSLSPGPLKAGLESA 432 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhh--cccccccCcccCCCcccccHHHH
Confidence 4667777777666543322 233445566655543321 00000000000 0111466777777776543322
Q ss_pred ---CCCCCCCCEEEccCCcCCc----cchhhhcCCCCCcEEEeeCCCCc
Q 002514 364 ---LGGLSSLKSLYLGGNRLNG----TINQSLGRMYKLEKLSLGGNSLT 405 (913)
Q Consensus 364 ---l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~ 405 (913)
+..-+.+..|++++|.... .+|.....-.+++.+..+.|...
T Consensus 433 in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 433 INKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred HHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 4455678888888886543 23444444455666666666543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=55.76 E-value=65 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=17.7
Q ss_pred CceeEEEcCCCcccccCCcc--ccccCCCcEEeCC
Q 002514 514 HKLMYLDLSNNLLSGRLPDC--WLLFDRLGILDLA 546 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls 546 (913)
..+++|+..+|.+.|..-.. +..-++.+.+++.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAG 388 (553)
T ss_pred eeeeEeeccccccccccccccceeecccccccccc
Confidence 45777777777776544322 2233445555543
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.89 E-value=9.2 Score=23.75 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=10.0
Q ss_pred CCCEEECCCCcCcccCC
Q 002514 162 NLQYLNLGYNDLLSVGN 178 (913)
Q Consensus 162 ~L~~L~Ls~n~l~~l~~ 178 (913)
+|+.|++++|+++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666655544
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.68 E-value=4.8 Score=45.18 Aligned_cols=66 Identities=23% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCCcEEEcCCccCCCCCChhHhhcCCCCCCEEEccCC--CCCCCCCCCCccccccCCCcccEEECCCCCCCC
Q 002514 186 LSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGC--DLPPFFPSADDPLHLNSSKSLEFLDLSENNLTS 256 (913)
Q Consensus 186 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 256 (913)
.+.+..+.|++|++..+..+......-|+|..|+|++| .+..... -.-.+. ..|++|-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e----l~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE----LDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh----hhhhcC-CCHHHeeecCCcccc
Confidence 34444455555555444333333344455555555555 2211100 000111 456666667776643
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.61 E-value=17 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=15.0
Q ss_pred eehhhhHHHHHHHHHHHHHHhhhcc
Q 002514 855 GFYVSLILGFFVGFWGFCGTLLVKS 879 (913)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (913)
..++++++|+++|+++++++++|+.
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHHHHHHHH
Confidence 3456666777777766665555443
No 95
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.58 E-value=30 Score=29.57 Aligned_cols=22 Identities=36% Similarity=0.303 Sum_probs=12.3
Q ss_pred CcchhHh-HHHHHHHHHHHHHHh
Q 002514 1 MQSKWLL-LLPQVALFSVISLQL 22 (913)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~ 22 (913)
|+||..+ +.-+++++++|++.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 8999855 434444444444444
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=34.82 E-value=14 Score=31.66 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhc
Q 002514 857 YVSLILGFFVGFWGFCGTLLVK 878 (913)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~ 878 (913)
++++++|.++++.+++++++|+
T Consensus 68 iagi~vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLCWW 89 (96)
T ss_pred EEEEEeehhhHHHHHHHHHhhe
Confidence 3443444443333344444443
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.93 E-value=43 Score=22.92 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=6.2
Q ss_pred ehhhhHHHHHHHH
Q 002514 856 FYVSLILGFFVGF 868 (913)
Q Consensus 856 ~~~~~~~~~~~~~ 868 (913)
.++++++|+++.+
T Consensus 8 IIv~V~vg~~iii 20 (38)
T PF02439_consen 8 IIVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.84 E-value=26 Score=47.70 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=24.8
Q ss_pred EccCccccccCCcccccCCCCCEeeCcCCccc
Q 002514 742 NLSRNNLTGQITPKISQLKSLDFLDLSRNRFF 773 (913)
Q Consensus 742 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~ 773 (913)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57788888776677777888888888888775
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.36 E-value=34 Score=38.76 Aligned_cols=37 Identities=30% Similarity=0.233 Sum_probs=19.5
Q ss_pred CCCCCCEEEccCCcCCccch--hhhcCCCCCcEEEeeCC
Q 002514 366 GLSSLKSLYLGGNRLNGTIN--QSLGRMYKLEKLSLGGN 402 (913)
Q Consensus 366 ~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n 402 (913)
+.+.+..+.+++|++..... .--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44566667777776653211 11122456666666666
No 100
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=26.80 E-value=57 Score=32.11 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=4.4
Q ss_pred CCEEEccCCCC
Q 002514 215 LTTLILEGCDL 225 (913)
Q Consensus 215 L~~L~L~~n~l 225 (913)
++-=.|.+|++
T Consensus 198 ~eGA~L~gcNf 208 (302)
T KOG1665|consen 198 AEGASLKGCNF 208 (302)
T ss_pred cccccccCcCC
Confidence 33333444444
No 101
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.19 E-value=63 Score=22.55 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=3.4
Q ss_pred hhhHHHHHH
Q 002514 858 VSLILGFFV 866 (913)
Q Consensus 858 ~~~~~~~~~ 866 (913)
+++++..++
T Consensus 15 ~~VvVPV~v 23 (40)
T PF08693_consen 15 VGVVVPVGV 23 (40)
T ss_pred EEEEechHH
Confidence 333333333
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.71 E-value=63 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=6.6
Q ss_pred CCCCEEECCCCc
Q 002514 161 SNLQYLNLGYND 172 (913)
Q Consensus 161 ~~L~~L~Ls~n~ 172 (913)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.80 E-value=52 Score=44.98 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=29.8
Q ss_pred EcccCcCcccchhhhhccccCcEEEccCccccc
Q 002514 718 DLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG 750 (913)
Q Consensus 718 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 750 (913)
||++|+|+-..+..|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999997777889999999999999999874
Done!