Query 002514
Match_columns 913
No_of_seqs 550 out of 5350
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 16:07:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002514.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1234-1238//hhsearch_pdb/002514hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 714.7 48.3 716 36-831 8-751 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 571.8 39.6 613 84-799 77-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 482.1 50.3 591 104-802 20-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 460.7 51.1 599 114-830 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 446.7 40.2 552 110-830 23-590 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 429.1 42.9 522 104-802 28-565 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 427.9 39.3 233 514-801 301-540 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 427.3 35.4 544 115-829 8-564 (844)
9 4eco_A Uncharacterized protein 1.0 1 1 424.2 26.8 504 36-799 26-602 (636)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 419.6 37.6 215 534-803 346-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=714.66 Aligned_cols=716 Identities=32% Similarity=0.468 Sum_probs=517.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCE---ECCCCCCCCCC
Q ss_conf 898898999999542196899998899999999998755632432999968999949999898510---05855228998
Q 002514 36 RCIDEEREALLSFKQSLVDEHGFLSSWGSEDNKSDCCEWIGVYCRNKTHHVYALDLQDGSLKLKGT---ILSPSLRKLQH 112 (913)
Q Consensus 36 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~~v~c~~~~~~v~~L~L~~~~~~~~g~---~~~~~l~~l~~ 112 (913)
.+.++|++||++||+++.||. .+++|. .+++||.|.||+|+ .++|+.|+|++ ..+.|. + ++++.++++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~--~~l~g~~~~l-~~~l~~L~~ 78 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS--KPLNVGFSAV-SSSLLSLTG 78 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT--SCCCEEHHHH-HHHTTTCTT
T ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCCCCCCCEEEC--CCCEEEEECCC--CCCCCCCCCC-CHHHHCCCC
T ss_conf 687899999999996678962-146878---99987688413878--99278987789--9867755766-965731680
Q ss_pred CCEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 8988399999999973105876321496898889899988995--68899999899889976835678724330699986
Q 002514 113 LTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPP--QLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLR 190 (913)
Q Consensus 113 L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~l~~~~~~l~~l~~L~ 190 (913)
|+.++++.+.+.. .+..++.+++ |++|++++|.+.+.+|. .++++++|++|++++|.+..... ...+.++++|+
T Consensus 79 L~~l~~~~~~~~~--l~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~ 154 (768)
T 3rgz_A 79 LESLFLSNSHING--SVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLE 154 (768)
T ss_dssp CCEEECTTSCEEE--CCCCCCCCTT-CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS-CCSCCCCTTCS
T ss_pred CCCCCCCCCCCCC--CCHHHCCCCC-CCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCC
T ss_conf 2246786888678--7033245788-998989898578707896787278899989896882677479-77856388999
Q ss_pred EEECCCCCCCCCCCHHHH---HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf 998578469999972476---21899888998569999999999984111258776149987899899996025773169
Q 002514 191 YLHLGHNNLSNSNDWPLV---VYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSS 267 (913)
Q Consensus 191 ~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 267 (913)
+|++++|.+.+. .+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.++. +.....
T Consensus 155 ~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~ 224 (768)
T 3rgz_A 155 VLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDV-------SRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224 (768)
T ss_dssp EEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCBC-------TTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred EEECCCCCCCCC--CCHHHHHHCCCCCCCEEECCCCCCCCCCCC-------CCCCCCCEEECCCCCCCCCCCC-CCCCCC
T ss_conf 898979835885--871556643589889898978803465784-------5478689898928827887711-126999
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 97599843873654453101089988599844774777655012387666566743788987315765202678789984
Q 002514 268 NLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSL 347 (913)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 347 (913)
|++|++++|.+++.++..+..+++|++|++++|.+.+..|.. .++ +|
T Consensus 225 -L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~------------------------------~L 271 (768)
T 3rgz_A 225 -LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK------------------------------SL 271 (768)
T ss_dssp -CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT------------------------------TC
T ss_pred -CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCC------------------------------CC
T ss_conf -998979488587816577744888898989888665716724--368------------------------------78
Q ss_pred CEEECCCCCCCCCCCC-CCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCE
Q ss_conf 6998228858557999-899-99887998438769854401115999975998007778432381333043451133557
Q 002514 348 ESLDLSANAVTGPIPE-LGG-LSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDW 425 (913)
Q Consensus 348 ~~L~Ls~n~l~~~~~~-l~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~ 425 (913)
++|++++|.+.+.+|. +.. +++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|...+..+++ ++.
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~----L~~ 347 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG----LKV 347 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT----CCE
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC----CCE
T ss_conf 9897917855772588888446868899896896778423677558776677897885257379788724888----878
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 77246558788882544226588426975575233678884555572204688243589999988965324678576652
Q 002514 426 LDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSI 505 (913)
Q Consensus 426 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~ 505 (913)
|++++|.+.+..|..+..... +|++|++++|++.+.+|.... .....+++.|++++|.+.+.+
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~-~L~~L~Ls~N~l~~~~~~~~~----------------~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNFSGPILPNLC----------------QNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTT-TCSEEECCSSEEEEECCTTTT----------------CSTTCCCCEEECCSSEEEEEC
T ss_pred EECCCCCCCCCCCHHHHHHHC-CCCEEECCCCCCCCCCCHHHH----------------HCCCCCCCEEECCCCCCCCCC
T ss_conf 848478437623098986322-771998627874787676665----------------332477618989778465424
Q ss_pred CHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCC
Q ss_conf 00000369920299868996535698100056877688587985774489987888997799841671543488433319
Q 002514 506 SFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNC 585 (913)
Q Consensus 506 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 585 (913)
+... ..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+
T Consensus 411 p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 411 PPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred CHHH-HCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCC
T ss_conf 8777-568987989895884668546777449988989897881547189788287773299901995137588788169
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99988987688363016436753199856673347703333885458999867894888989766631112211100001
Q 002514 586 LLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEK 665 (913)
Q Consensus 586 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~ 665 (913)
++|+.|++++|++.+.+|.++. .+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+.....+....
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHH
T ss_conf 9899897539951896876885-689999898978943374887770889899898988846882795786042122320
Q ss_pred CC---CCCCCCCCCCC----------CCCCC-CCCC---CCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 33---22224564324----------69998-7533---58876554215550542110132361218983368685555
Q 002514 666 SS---VLSVTSNYSFI----------SDGGF-PLVW---YDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEV 728 (913)
Q Consensus 666 ~~---~~~~~~~~~~~----------~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~i 728 (913)
.. .+......... ...+. +... ..............+.....+..++.++.|||++|+++|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 13454211113444322223322210013556323200232110011331004627433403356657978588015558
Q ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 15443023475897568524444870112689999765968815423781253899999697877945114999987886
Q 002514 729 PEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQS 808 (913)
Q Consensus 729 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip~~~~~~~ 808 (913)
|..+++++.|+.|+|++|.++|.+|..|+++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.||.++++.+
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 728 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGG
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCC
T ss_conf 77884141578784868803887896784777899898978802386886775788789787968815560899601024
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 456777899-78899999999999
Q 002514 809 FNASTYAGN-ELCGLPLPNKCPDE 831 (913)
Q Consensus 809 ~~~~~~~~n-~l~g~~~~~~c~~~ 831 (913)
|...+|.|| +|||.|.. .|...
T Consensus 729 ~~~~~~~gN~~Lcg~~l~-~C~~~ 751 (768)
T 3rgz_A 729 FPPAKFLNNPGLCGYPLP-RCDPS 751 (768)
T ss_dssp SCGGGGCSCTEEESTTSC-CCCSC
T ss_pred CCHHHHCCCCHHCCCCCC-CCCCC
T ss_conf 897775698321088776-78887
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=571.77 Aligned_cols=613 Identities=30% Similarity=0.391 Sum_probs=479.1
Q ss_pred CCEEEEECCCCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCC--HHHHHHCCCCEEECCCCCCCCCCCCCC-CCC
Q ss_conf 96899994999989851005855228998898839999999997310--587632149689888989998899568-899
Q 002514 84 HHVYALDLQDGSLKLKGTILSPSLRKLQHLTYLDLSDNDFSGIPIAD--FIGSLSSKLRHLDLGWAGFAGSVPPQL-GNL 160 (913)
Q Consensus 84 ~~v~~L~L~~~~~~~~g~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~~~L~~L~Ls~n~~~~~~p~~l-~~l 160 (913)
.+++.++++.+.. . .+ ++.+.++++|++|+|++|.+.+. +|. .++.+++ |++|++++|.+.+..|..+ .++
T Consensus 77 ~~L~~l~~~~~~~--~-~l-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 77 TGLESLFLSNSHI--N-GS-VSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSG-LKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp TTCCEEECTTSCE--E-EC-CCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTT-CCEEECCSSEEECCSSCCSCCCC
T ss_pred CCCCCCCCCCCCC--C-CC-CHHHCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCC-CCEEECCCCCCCCCCCHHHHCCC
T ss_conf 8022467868886--7-87-03324578899898989857870-789678727889-99898968826774797785638
Q ss_pred CCCCEEECCCCCCCCCCCC-HHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998998899768356787-243306999869985784699999724762189988899856999999999998411125
Q 002514 161 SNLQYLNLGYNDLLSVGNL-LHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLN 239 (913)
Q Consensus 161 ~~L~~L~Ls~n~~~~l~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 239 (913)
++|++|++++|.+...... +..+.++++|++|++++|.+.+... ..++++|++|++++|.+.+..+ .+ .
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~-----~l-~ 220 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP-----FL-G 220 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC-----BC-T
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCCC-----CC-C
T ss_conf 899989897983588587155664358988989897880346578----4547868989892882788771-----11-2
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 877614998789989999602577316997599843873654453101089988599844774777655012387-6665
Q 002514 240 SSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFGNM-CCLN 318 (913)
Q Consensus 240 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~ 318 (913)
.+++|++|++++|.+++.++..+..+.. |++|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..+... ++|+
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSS-CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCC-CCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCC
T ss_conf 6999998979488587816577744888-898989888665716724--3687898979178557725888884468688
Q ss_pred EEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCHHHHCCCC-CCC
Q ss_conf 667437889873157652026787899846998228858557999--89999887998438769854401115999-975
Q 002514 319 ELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPE--LGGLSSLKSLYLGGNRLNGTINQSLGRMY-KLE 395 (913)
Q Consensus 319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~ 395 (913)
+|++++|.+++..|..+..++ +|+.|++++|.+.+.+|. +..+++|++|++++|.+++.+|..+..++ +|+
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCS------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCT------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred EEECCCCCCCCCCCHHHHCCC------CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCC
T ss_conf 998968967784236775587------76677897885257379788724888878848478437623098986322771
Q ss_pred EEEEECCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 99800777843238133304345113355777246558788882544226588426975575233678884555572204
Q 002514 396 KLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDI 475 (913)
Q Consensus 396 ~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~l 475 (913)
.|++++|.+.+.++...... ..+.++.|++++|.+.+..|..+..+. +|++|++++|++.+..|.....
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~---~~~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~~------ 440 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQN---PKNTLQELYLQNNGFTGKIPPTLSNCS--ELVSLHLSFNYLSGTIPSSLGS------ 440 (768)
T ss_dssp EEECCSSEEEEECCTTTTCS---TTCCCCEEECCSSEEEEECCGGGGGCT--TCCEEECCSSEEESCCCGGGGG------
T ss_pred EEECCCCCCCCCCCHHHHHC---CCCCCCEEECCCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCCCHHHHC------
T ss_conf 99862787478767666533---247761898977846542487775689--8798989588466854677744------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 68824358999998896532467857665200000369920299868996535698100056877688587985774489
Q 002514 476 SSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIP 555 (913)
Q Consensus 476 s~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 555 (913)
+++|+.|++++|.+.+.++.... .+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|
T Consensus 441 ------------l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 441 ------------LSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp ------------CTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ------------CCCCCEEECCCCCCCCCCCHHHC-CCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf ------------99889898978815471897882-87773299901995137588788169989989753995189687
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHH---------------------------
Q ss_conf 98788899779984167154348843331999988987688363016436753---------------------------
Q 002514 556 DSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGE--------------------------- 608 (913)
Q Consensus 556 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~--------------------------- 608 (913)
..++.+++|++|++++|++++.+|..+..+++|+.|++++|++.|.+|.+++.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 68856899998989789433748877708898998989888468827957860421223201345421111344432222
Q ss_pred ------------------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf ------------------19985667334770333388545899986789488898976663111221110000133222
Q 002514 609 ------------------SLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVLS 670 (913)
Q Consensus 609 ------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~ 670 (913)
.++.+..+++..|.+.+.+|..+..+++|+.||+++|+++|.+|..+.+++.+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--------- 658 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------- 658 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC---------
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC---------
T ss_conf 33222100135563232002321100113310046274334033566579785880155587788414157---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 24564324699987533588765542155505421101323612189833686855551544302347589756852444
Q 002514 671 VTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTG 750 (913)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 750 (913)
+.|+|++|+++|.+|..++++++|+.|||++|+++|
T Consensus 659 --------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 659 --------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp --------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred --------------------------------------------CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf --------------------------------------------878486880388789678477789989897880238
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCC
Q ss_conf 487011268999976596881542378125389999969787794-5114
Q 002514 751 QITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNN-LSGK 799 (913)
Q Consensus 751 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-L~g~ 799 (913)
.+|..++++++|+.||+++|+++|.+|.. ..+.++....+.+|+ |+|.
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 68867757887897879688155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=482.14 Aligned_cols=591 Identities=24% Similarity=0.256 Sum_probs=457.0
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH
Q ss_conf 85522899889883999999999731058763214968988898999889956889999989988997683567872433
Q 002514 104 SPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWL 183 (913)
Q Consensus 104 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~l~~~~~~l 183 (913)
|..+. +++++|++++|.+++. .+..+..+++ |++|++++|.+.+..|..|+++++|++|++++|.+..++.. .+
T Consensus 20 p~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~ 93 (680)
T 1ziw_A 20 PDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--TF 93 (680)
T ss_dssp CSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTT-CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT--TT
T ss_pred CCCCC--CCCCEEECCCCCCCCC-CHHHHHCCCC-CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH--HH
T ss_conf 41248--8876888989977875-9788717876-75887889964856977874066768888999856756854--53
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 06999869985784699999724762189988899856999999999998411125877614998789989999602577
Q 002514 184 YHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLF 263 (913)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 263 (913)
.++++|++|++++|.+... .+..+.++++|++|++++|.+.+..+. .+.. +++|++|++++|.+++..+..+.
T Consensus 94 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~-l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKI--KNNPFVKQKNLITLDLSHNGLSSTKLG----TQVQ-LENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp TTCTTCSEEECCSSCCCCC--CSCTTTTCTTCCEEECCSSCCSCCCCC----SSSC-CTTCCEEECCSSCCCCBCHHHHG
T ss_pred CCCCCCCEEECCCCCCCCC--CHHHCCCCCCCCEEECCCCCCCCCCCH----HHCC-CCCCCEEECCCCCCCCCCHHHHH
T ss_conf 0388889898989966853--966741567888898989952466721----1124-55677797458843652978862
Q ss_pred HC-CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCHHHHHHHCC
Q ss_conf 31-69975998438736544531010899885998447747776550123---876665667437889873157652026
Q 002514 264 NV-SSNLVELGLSSNLLQGSIPDAFEHMVSLQTLFLYSNELEGGIPKFFG---NMCCLNELVLCSNQLTGQLFEFIQNLS 339 (913)
Q Consensus 264 ~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~ 339 (913)
.. ..+|+.|++++|.+.+..+..+..+++|+.+++.++.+.......+. ..++|+.|++++|.+.+..+..+..+.
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 44666321798889825655815553223445543056646805677787775315100887457743646866751467
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCH--------
Q ss_conf 787899846998228858557999-89999887998438769854401115999975998007778432381--------
Q 002514 340 CGCAKNSLESLDLSANAVTGPIPE-LGGLSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISE-------- 410 (913)
Q Consensus 340 ~~~~~~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-------- 410 (913)
.++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+..+..+..+++|+.+++++|...+.++.
T Consensus 247 ----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 247 ----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp ----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred ----CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCH
T ss_conf ----6778887787887675680211674105685577885676586562678885577363313213333355454386
Q ss_pred HHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 33304345113355777246558788882544226588426975575233678884555572204688243589999988
Q 002514 411 DFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSN 490 (913)
Q Consensus 411 ~~~~~l~~L~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~ 490 (913)
..+..++ .++.+++++|.+.+..+..+..+. +|++|++++|.+.... +...
T Consensus 323 ~~~~~l~----~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~~~~~~-----------l~~~------------ 373 (680)
T 1ziw_A 323 FSFQWLK----CLEHLNMEDNDIPGIKSNMFTGLI--NLKYLSLSNSFTSLRT-----------LTNE------------ 373 (680)
T ss_dssp TTTTTCT----TCCEEECCSCCBCCCCTTTTTTCT--TCCEEECTTCBSCCCE-----------ECTT------------
T ss_pred HHCCCCC----CCCEEECCCCCCCCCCHHHHCCCC--CCCEEECCCCCHHHHH-----------CCHH------------
T ss_conf 5624677----788887989826878855740656--8728988798014432-----------3532------------
Q ss_pred CCEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEC
Q ss_conf 96532467857665200000369920299868996535698100056877688587985774489-98788899779984
Q 002514 491 ASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIP-DSMGSLPNIQILSL 569 (913)
Q Consensus 491 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L 569 (913)
.+.....++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++
T Consensus 374 ----------------~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 374 ----------------TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp ----------------TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred ----------------HHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf ----------------2024556867668899997776775442077888888677875754357553257546127844
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCC--CCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 167154348843331999988987688363--016436753199856673347703333885458999867894888989
Q 002514 570 HNNRLTGELPSTLQNCLLLKLMDLGRNALS--GEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNI 647 (913)
Q Consensus 570 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 647 (913)
++|++.+..+..|..+++|+.|++++|.+. +.+|..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 8997542276455007543101101464422566776455-578789998999987767944634553468885889973
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 76663111221110000133222245643246999875335887655421555054211013236121898336868555
Q 002514 648 PGIIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGE 727 (913)
Q Consensus 648 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ 727 (913)
.+..+..+... ....+..++.|+.|+|++|+++..
T Consensus 517 ~~~~~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 517 ARLWKHANPGG---------------------------------------------PIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp GGGGSTTSTTS---------------------------------------------CCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCHHHCCCC---------------------------------------------CCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 00000004677---------------------------------------------414233799888888999978877
Q ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC
Q ss_conf 515443023475897568524444870112689999765968815423781253-899999697877945114999
Q 002514 728 VPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLS-QLSGLSVMDLSYNNLSGKIPS 802 (913)
Q Consensus 728 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~L~g~ip~ 802 (913)
.+..|.++++|+.|++++|++++..+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 9777346667522389999777679768378988888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=460.69 Aligned_cols=599 Identities=24% Similarity=0.236 Sum_probs=363.4
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf 98839999999997310587632149689888989998899568899999899889976835678724330699986998
Q 002514 114 TYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSSLRYLH 193 (913)
Q Consensus 114 ~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~l~~~~~~l~~l~~L~~L~ 193 (913)
+.++++++.++.+ |..+. + ++++|++++|.+.+..+..|.++++|++|++++|.+..++. ..+.++++|++|+
T Consensus 7 ~~~~cs~~~L~~i--p~~~~--~-~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 7 EVADCSHLKLTQV--PDDLP--T-NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVLN 79 (680)
T ss_dssp SEEECCSSCCSSC--CSCSC--T-TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT--THHHHCTTCCEEE
T ss_pred CEEECCCCCCCCC--CCCCC--C-CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCH--HHHHCCCCCCEEE
T ss_conf 7448777980526--41248--8-87688898997787597887178767588788996485697--7874066768888
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 57846999997247621899888998569999999999984111258776149987899899996025773169975998
Q 002514 194 LGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVSSNLVELG 273 (913)
Q Consensus 194 Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~L~~L~ 273 (913)
+++|.+.... +..+.++++|++|++++|.+.+..+. .+. .+++|++|++++|.+++..+..+..+.. |++|+
T Consensus 80 L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~ 151 (680)
T 1ziw_A 80 LQHNELSQLS--DKTFAFCTNLTELHLMSNSIQKIKNN----PFV-KQKNLITLDLSHNGLSSTKLGTQVQLEN-LQELL 151 (680)
T ss_dssp CCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCSC----TTT-TCTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEE
T ss_pred CCCCCCCCCC--HHHHCCCCCCCEEECCCCCCCCCCHH----HCC-CCCCCCEEECCCCCCCCCCCHHHCCCCC-CCEEE
T ss_conf 9998567568--54530388889898989966853966----741-5678888989899524667211124556-77797
Q ss_pred CCCCCCCCCCCHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 438736544531010--899885998447747776550123876665667437889873157652026787899846998
Q 002514 274 LSSNLLQGSIPDAFE--HMVSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESLD 351 (913)
Q Consensus 274 L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~ 351 (913)
+++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+++|+.+++.++.+.......+.... ..++|+.|+
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l---~~~~L~~L~ 228 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL---ANTSIRNLS 228 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH---TTSCCCEEE
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHCCCCEEE
T ss_conf 45884365297886244666321798889825655815553223445543056646805677787775---315100887
Q ss_pred CCCCCCCCCCCC-CCCCCC--CCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEC
Q ss_conf 228858557999-899998--87998438769854401115999975998007778432381333043451133557772
Q 002514 352 LSANAVTGPIPE-LGGLSS--LKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDI 428 (913)
Q Consensus 352 Ls~n~l~~~~~~-l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~l 428 (913)
+++|.+.+..+. +..++. |+.|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+..+++ ++.+++
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~----L~~L~L 303 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFN----VRYLNL 303 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTT----CCEEEC
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH-HHCCCCC----CCEEEC
T ss_conf 45774364686675146767788877878876756802116741056855778856765865-6267888----557736
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 46558788882544226588426975575233678884555572204688243589999988965324678576652000
Q 002514 429 SNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFL 508 (913)
Q Consensus 429 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 508 (913)
++|...+..+.. .+|. +. ......+++|+.+++++|.+.+..+..
T Consensus 304 ~~~~~~~~~~~~---------------------~lp~---------i~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 304 KRSFTKQSISLA---------------------SLPK---------ID-----DFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TTCBCCC---------------------------CCE---------EC-----TTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred CCHHHHCCCCCC---------------------CCCC---------CC-----HHHCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 331321333335---------------------5454---------38-----656246777888879898268788557
Q ss_pred CCCCCCCEEEEECCCCCCCC--CCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHH
Q ss_conf 00369920299868996535--698100056--877688587985774489987888997799841671543488-4333
Q 002514 509 CSISGHKLMYLDLSNNLLSG--RLPDCWLLF--DRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELP-STLQ 583 (913)
Q Consensus 509 ~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~ 583 (913)
+..+++|+.|++++|.+.. .....|..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+.
T Consensus 349 -~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 349 -FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp -TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred -HCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf -4065687289887980144323532202455686766889999777677544207788888867787575435755325
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 19999889876883630164367531998566733477033--3388545899986789488898976663111221110
Q 002514 584 NCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFH--GIIPFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAM 661 (913)
Q Consensus 584 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l 661 (913)
++++|+.|++++|++.+..+..+. .+++|+.|++++|.+. +..|..+.++++|+.|++++|.+++..+..+.++..+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCEECHHHHH-CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 754612784489975422764550-0754310110146442256677645557878999899998776794463455346
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCH--------HHHH
Q ss_conf 00013322224564324699987533588765542155505421101323612189833686855551--------5443
Q 002514 662 AQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVP--------EEIM 733 (913)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ip--------~~l~ 733 (913)
+.|++++|++++..+ ..+.
T Consensus 507 -----------------------------------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 507 -----------------------------------------------------EILDLQHNNLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp -----------------------------------------------------CEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred -----------------------------------------------------CEEECCCCCCCCCCHHHCCCCCCHHHC
T ss_conf -----------------------------------------------------888588997300000004677414233
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-C-CCCCCCC
Q ss_conf 0234758975685244448701126899997659688154237812538999996978779451149999-8-7886456
Q 002514 734 DLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSG-T-QLQSFNA 811 (913)
Q Consensus 734 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip~~-~-~~~~~~~ 811 (913)
++++|+.|++++|.++...+..|.++++|+.|++++|++++..+..+..+++|+.|++++|++++..|.. . .+..+..
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCE
T ss_conf 79988888899997887797773466675223899997776797683789888889899996870596683011466577
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 7778997889999999999
Q 002514 812 STYAGNELCGLPLPNKCPD 830 (913)
Q Consensus 812 ~~~~~n~l~g~~~~~~c~~ 830 (913)
. .+.|+|+.|.|..
T Consensus 614 l-----~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 614 L-----DMRFNPFDCTCES 627 (680)
T ss_dssp E-----ECTTCCCCBCCCC
T ss_pred E-----ECCCCCCCCCCCC
T ss_conf 9-----8318970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=446.74 Aligned_cols=552 Identities=23% Similarity=0.247 Sum_probs=313.0
Q ss_pred CCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC
Q ss_conf 99889883999999999731058763214968988898999889-95688999998998899768356787243306999
Q 002514 110 LQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSV-PPQLGNLSNLQYLNLGYNDLLSVGNLLHWLYHLSS 188 (913)
Q Consensus 110 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~n~~~~l~~~~~~l~~l~~ 188 (913)
.+++++|+|++|.+++. .+..+..+++ |++|++++|...+.+ |..|+++++|++|+|++|.+..+.. ..+.++++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~-L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP--DAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCS-CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT--TSSCSCSS
T ss_pred CCCCCEEECCCCCCCCC-CHHHCCCCCC-CEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH--HHCCCCCC
T ss_conf 99868888877867832-9667766213-70886789977444197785378778888798995853197--67157866
Q ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCC-C
Q ss_conf 869985784699999724762189988899856999999999998411125877614998789989999602577316-9
Q 002514 189 LRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLFNVS-S 267 (913)
Q Consensus 189 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~-~ 267 (913)
|++|++++|.+.+.......+.++++|++|++++|.+.+..+ +..+..+++|++|++++|.+++..+..+.... .
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL----HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC----CHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCC
T ss_conf 587017678897340467645566799988898786423256----6557638898989898984776678875355677
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCHHHHHHHC
Q ss_conf 9759984387365445310108998------8599844774777655012387---666566743788987315765202
Q 002514 268 NLVELGLSSNLLQGSIPDAFEHMVS------LQTLFLYSNELEGGIPKFFGNM---CCLNELVLCSNQLTGQLFEFIQNL 338 (913)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l 338 (913)
+|+.|+++.|.+.+..+..+..+++ |+.|++++|.+.+..+..+... +.++.+.+..+.+...
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------- 246 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------- 246 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------
T ss_pred CCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC--------
T ss_conf 503578978866655455332237722357400796578868656778887642744100112121223466--------
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCC-CCC--CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHHC
Q ss_conf 6787899846998228858557999-899--9988799843876985440111599997599800777843238133304
Q 002514 339 SCGCAKNSLESLDLSANAVTGPIPE-LGG--LSSLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFFSN 415 (913)
Q Consensus 339 ~~~~~~~~L~~L~Ls~n~l~~~~~~-l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 415 (913)
...+.+...... +.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..
T Consensus 247 -------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~ 312 (844)
T 3j0a_A 247 -------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-AFYG 312 (844)
T ss_dssp -------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-TTTT
T ss_pred -------------CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH-HHCC
T ss_conf -------------44456688985565255547861898979945515863452589999998979818987968-8368
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 34511335577724655878888254422658842697557523367888455557220468824358999998896532
Q 002514 416 TSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLN 495 (913)
Q Consensus 416 l~~L~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~L~~L~ 495 (913)
++ +|++|++++|.+.+..|. .+.
T Consensus 313 l~------------------------------~L~~L~Ls~N~l~~~~~~---------------------~~~------ 335 (844)
T 3j0a_A 313 LD------------------------------NLQVLNLSYNLLGELYSS---------------------NFY------ 335 (844)
T ss_dssp CS------------------------------SCCEEEEESCCCSCCCSC---------------------SCS------
T ss_pred CC------------------------------CCCEEECCCCCCCCCCHH---------------------HHC------
T ss_conf 88------------------------------999898989978851878---------------------846------
Q ss_pred CCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 46785766520000036992029986899653569810005687768858798577448998788899779984167154
Q 002514 496 LSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLT 575 (913)
Q Consensus 496 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 575 (913)
..++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+ +..+++|+.|++++|+++
T Consensus 336 ----------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 336 ----------------GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp ----------------SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC
T ss_pred ----------------CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-----CCCCCCCCHHCCCCCCCC
T ss_conf ----------------89999989898998776286661378889998898997786-----168898232005899723
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 348843331999988987688363016436753199856673347703333885-4589998678948889897666311
Q 002514 576 GELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPF-QLCHLPFIQILDLSSNNIPGIIPKC 654 (913)
Q Consensus 576 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~ 654 (913)
.+|.. ..+++.+++++|++.+.-.......+++|+.|++++|++.+..+. .+..+++|+.|++++|.+....+..
T Consensus 395 -~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 395 -TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp -CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred -CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -14554---55431221456753457556665127766666677871255554333566873100247777364410135
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHC
Q ss_conf 12211100001332222456432469998753358876554215550542110132361218983368685555154430
Q 002514 655 FNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMD 734 (913)
Q Consensus 655 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ip~~l~~ 734 (913)
.. ...+..++.|+.|+|++|++++.+|..+.+
T Consensus 471 ~~------------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 471 LC------------------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp CC------------------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred CC------------------------------------------------HHHHCCCCCCCEEECCCCCCCCCCHHHCCC
T ss_conf 53------------------------------------------------555447553657778898565539557045
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23475897568524444870112689999765968815423781253899999697877945114999987886456777
Q 002514 735 LVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTY 814 (913)
Q Consensus 735 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip~~~~~~~~~~~~~ 814 (913)
+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|+.+ .+|+.+++++|++.|.++... |..-..
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~----f~~~~~ 573 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELST----FINWLN 573 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCS----HHHHHH
T ss_pred HHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCCHH----HHHHHH
T ss_conf 01221569999978745710110--045588898884788896683---776889931997025366189----999997
Q ss_pred CCC-CCCCCCCCCCCCC
Q ss_conf 899-7889999999999
Q 002514 815 AGN-ELCGLPLPNKCPD 830 (913)
Q Consensus 815 ~~n-~l~g~~~~~~c~~ 830 (913)
..+ .++|.+....|..
T Consensus 574 ~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 574 HTNVTIAGPPADIYCVY 590 (844)
T ss_dssp HTTTTTCCCGGGCCCSS
T ss_pred HCCCCCCCCCCCCCCCC
T ss_conf 36853026600275578
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=429.07 Aligned_cols=522 Identities=22% Similarity=0.233 Sum_probs=334.3
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH
Q ss_conf 85522899889883999999999731058763214968988898999889956889999989988997683567872433
Q 002514 104 SPSLRKLQHLTYLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDLLSVGNLLHWL 183 (913)
Q Consensus 104 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~l~~~~~~l 183 (913)
|..+. +.+++|++++|.++++ .+..+..+++ |++|++++|.+.+..|..|+++++|++|++++|.+..++. ..+
T Consensus 28 P~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~ 101 (606)
T 3t6q_A 28 PGTLP--NSTECLEFSFNVLPTI-QNTTFSRLIN-LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE--TAL 101 (606)
T ss_dssp CTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTT-CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT--TTT
T ss_pred CCCCC--CCCCEEECCCCCCCCC-CHHHHCCCCC-CEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH--HHH
T ss_conf 67789--8675898158734717-9667256766-5289788983552485113684336764488985654586--552
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH
Q ss_conf 06999869985784699999724762189988899856999999999998411125877614998789989999602577
Q 002514 184 YHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYPWLF 263 (913)
Q Consensus 184 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 263 (913)
.++++|++|++++|.+... .+..+.++++|++|++++|.+.+... +.+.. +++|++|++++|.++
T Consensus 102 ~~l~~L~~L~L~~n~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~-l~~L~~L~L~~n~l~-------- 166 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSI--DFIPLHNQKTLESLYLGSNHISSIKL----PKGFP-TEKLKVLDFQNNAIH-------- 166 (606)
T ss_dssp SSCTTCCEEECTTSCCSCG--GGSCCTTCTTCCEEECCSSCCCCCCC----CTTCC-CTTCCEEECCSSCCC--------
T ss_pred CCCCCCCEEECCCCCCCCC--CCCHHCCCCCCCEEECCCCCCCCCCC----CCCCC-CCCCCEEECCCCCCC--------
T ss_conf 3442153765212676657--81012237822389887983411476----54568-765687776568445--------
Q ss_pred HCCCCCCEEECCCCCCCCCCCHHHCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf 3169975998438736544531010899885--99844774777655012387666566743788987315765202678
Q 002514 264 NVSSNLVELGLSSNLLQGSIPDAFEHMVSLQ--TLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCG 341 (913)
Q Consensus 264 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 341 (913)
+..+..+..+++|+ .|++++|.+.+..+..+.. ..|+.+++++|. ..+..+..+.
T Consensus 167 -----------------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~-- 223 (606)
T 3t6q_A 167 -----------------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLK-- 223 (606)
T ss_dssp -----------------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTT--
T ss_pred -----------------CCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCH---HHHHHHHHCC--
T ss_conf -----------------54965633221564038966798147548667300-100135567726---6777765133--
Q ss_pred CCCCCCCEEECCCCCCCC----CC-CC-CCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHH
Q ss_conf 789984699822885855----79-99-89999--887998438769854401115999975998007778432381333
Q 002514 342 CAKNSLESLDLSANAVTG----PI-PE-LGGLS--SLKSLYLGGNRLNGTINQSLGRMYKLEKLSLGGNSLTGVISEDFF 413 (913)
Q Consensus 342 ~~~~~L~~L~Ls~n~l~~----~~-~~-l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 413 (913)
.+....+....+.. .+ +. +..+. +|+.+++++|.+++..+..+..+++|+.|++++|.+. .+|.. +
T Consensus 224 ----~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l 297 (606)
T 3t6q_A 224 ----NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG-L 297 (606)
T ss_dssp ----TCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS-C
T ss_pred ----CCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHH-H
T ss_conf ----56442200201102641226866743032075059994457658557777445667888956288267-77821-4
Q ss_pred HCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 04345113355777246558788882544226588426975575233678884555572204688243589999988965
Q 002514 414 SNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASV 493 (913)
Q Consensus 414 ~~l~~L~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~L~~ 493 (913)
..++ +|++|++++|.+.+
T Consensus 298 ~~l~------------------------------~L~~L~l~~n~l~~-------------------------------- 315 (606)
T 3t6q_A 298 VGLS------------------------------TLKKLVLSANKFEN-------------------------------- 315 (606)
T ss_dssp CSCT------------------------------TCCEEECTTCCCSB--------------------------------
T ss_pred CCCC------------------------------CCCEEECCCCCCCC--------------------------------
T ss_conf 1654------------------------------68889771687686--------------------------------
Q ss_pred EECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECC
Q ss_conf 32467857665200000369920299868996535698-10005687768858798577448--9987888997799841
Q 002514 494 LNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLP-DCWLLFDRLGILDLANNNFSGKI--PDSMGSLPNIQILSLH 570 (913)
Q Consensus 494 L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~ 570 (913)
..+. ....+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+.. +..+..+++|++|+++
T Consensus 316 ----------~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 316 ----------LCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp ----------GGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred ----------CCHH-HHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECC
T ss_conf ----------7602-33015768988898997444346245506675898878899666456752210567888989898
Q ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 67154348843331999988987688363016436753199856673347703333885458999867894888989766
Q 002514 571 NNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPGI 650 (913)
Q Consensus 571 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 650 (913)
+|.+.+..|..+..+++|+.|++++|++.+..|...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 99677578887347745776878888677756521241765588898989855776877873788788898989988854
Q ss_pred CC---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 63---111221110000133222245643246999875335887655421555054211013236121898336868555
Q 002514 651 IP---KCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGE 727 (913)
Q Consensus 651 ~p---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ 727 (913)
.. ..+.. ++.|+.|++++|++++.
T Consensus 465 ~~~~~~~~~~-----------------------------------------------------l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 465 NIQKTNSLQT-----------------------------------------------------LGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECSSCGGGG-----------------------------------------------------CTTCCEEECTTSCCCEE
T ss_pred CCCCCHHHCC-----------------------------------------------------CCCCCEEECCCCCCCCC
T ss_conf 3454312404-----------------------------------------------------88766887999966706
Q ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 515443023475897568524444870112689999765968815423781253899999697877945114999
Q 002514 728 VPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPS 802 (913)
Q Consensus 728 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip~ 802 (913)
+|..+..+++|+.|++++|.+++.+|..+.+++.| .|++++|++++..|..+..+++|+.+++++|++.|.++.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 86463265678889898980686896684756651-898768941426876625677878896779986166775
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=427.94 Aligned_cols=233 Identities=22% Similarity=0.243 Sum_probs=102.4
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC--CHHHHCCCCCCE
Q ss_conf 9202998689965356981000568776885879857744899-8788899779984167154348--843331999988
Q 002514 514 HKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPD-SMGSLPNIQILSLHNNRLTGEL--PSTLQNCLLLKL 590 (913)
Q Consensus 514 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~ 590 (913)
++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|+.
T Consensus 301 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCE
T ss_conf 46888977168768676023301576898889899744434624550667589887889966645675221056788898
Q ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 987688363016436753199856673347703333885-4589998678948889897666311122111000013322
Q 002514 591 MDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGIIPF-QLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKSSVL 669 (913)
Q Consensus 591 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~ 669 (913)
|++++|++.+..|..+. .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..++.+
T Consensus 381 L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------- 451 (606)
T 3t6q_A 381 LNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-------- 451 (606)
T ss_dssp EECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC--------
T ss_pred EECCCCCCCCCCHHHHC-CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCC--------
T ss_conf 98989967757888734-774577687888867775652124176558889898985577687787378878--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCC---CHHHHHCCCCCCEEECCCC
Q ss_conf 2245643246999875335887655421555054211013236121898336868555---5154430234758975685
Q 002514 670 SVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGE---VPEEIMDLVGLIAMNLSRN 746 (913)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~---ip~~l~~l~~L~~L~Ls~N 746 (913)
+.|++++|++++. .+..+..+++|+.|++++|
T Consensus 452 ---------------------------------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 452 ---------------------------------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp ---------------------------------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred ---------------------------------------------CEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCC
T ss_conf ---------------------------------------------88989899888543454312404887668879999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 2444487011268999976596881542378125389999969787794511499
Q 002514 747 NLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIP 801 (913)
Q Consensus 747 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip 801 (913)
.+++.+|..|+++++|+.|++++|++++..|..+..++.| .|++++|++.+.+|
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCH
T ss_conf 6670686463265678889898980686896684756651-89876894142687
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=427.26 Aligned_cols=544 Identities=22% Similarity=0.197 Sum_probs=276.3
Q ss_pred EEECCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCCHHHHCCCCCCCEEE
Q ss_conf 88399999999973105876321496898889899988995688999998998899768-35678724330699986998
Q 002514 115 YLDLSDNDFSGIPIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNLSNLQYLNLGYNDL-LSVGNLLHWLYHLSSLRYLH 193 (913)
Q Consensus 115 ~L~Ls~n~i~~~~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~-~~l~~~~~~l~~l~~L~~L~ 193 (913)
..+.+++.++.+ |. ++.++++|++++|.+.+..|..|.++++|++|++++|.. ..++. ..+.++++|+.|+
T Consensus 8 ~~dcs~~~L~~v--P~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~--~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 8 IAFYRFCNLTQV--PQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK--EAFRNLPNLRILD 79 (844)
T ss_dssp EEEESCCCSSCC--CS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECT--TTTSSCTTCCEEE
T ss_pred EEECCCCCCCCC--CC----CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCH--HHHCCCCCCCEEE
T ss_conf 898237997778--98----999868888877867832966776621370886789977444197--7853787788887
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEE
Q ss_conf 5784699999724762189988899856999999999998411125877614998789989999602-577316997599
Q 002514 194 LGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDLSENNLTSSVYP-WLFNVSSNLVEL 272 (913)
Q Consensus 194 Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~~~~L~~L 272 (913)
+++|.+... .+..+.++++|++|++++|.+.+..+. ...+..+++|++|++++|.+.+..+. .+.++. +|++|
T Consensus 80 Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L 153 (844)
T 3j0a_A 80 LGSSKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLK---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-SLKSI 153 (844)
T ss_dssp CTTCCCCEE--CTTSSCSCSSCCCEECTTCCCSSCCST---TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-SCCEE
T ss_pred CCCCCCCCC--CHHHCCCCCCCCEEECCCCCCCCCCCC---CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCC-CCCEE
T ss_conf 989958531--976715786658701767889734046---764556679998889878642325665576388-98989
Q ss_pred ECCCCCCCCCCCHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEE
Q ss_conf 843873654453101089--988599844774777655012387666566743788987315765202678789984699
Q 002514 273 GLSSNLLQGSIPDAFEHM--VSLQTLFLYSNELEGGIPKFFGNMCCLNELVLCSNQLTGQLFEFIQNLSCGCAKNSLESL 350 (913)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L 350 (913)
++++|.+.+..+..+..+ ++|+.|+++.|.+.+..+..+..+++ ....
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~------------------------~~~~------ 203 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN------------------------PFRN------ 203 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC------------------------TTTT------
T ss_pred ECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCC------------------------CCCC------
T ss_conf 8989847766788753556775035789788666554553322377------------------------2235------
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC---CCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 8228858557999899998879984387698544011159---9997599800777843238133304345113355777
Q 002514 351 DLSANAVTGPIPELGGLSSLKSLYLGGNRLNGTINQSLGR---MYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLD 427 (913)
Q Consensus 351 ~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~ 427 (913)
..|+.|++++|.+++..+..+.. ...++.+.+..+.....
T Consensus 204 -----------------~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------------------- 246 (844)
T 3j0a_A 204 -----------------MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------------------- 246 (844)
T ss_dssp -----------------CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------------
T ss_pred -----------------CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCC--------------------
T ss_conf -----------------7400796578868656778887642744100112121223466--------------------
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH
Q ss_conf 24655878888254422658842697557523367888455557220468824358999998896532467857665200
Q 002514 428 ISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLSLRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISF 507 (913)
Q Consensus 428 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~l~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 507 (913)
...+.+.......+..+..++++.|++++|.+.+..+... ..+++|+.|++++|.+.+..+.
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~------------------~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF------------------ETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS------------------SSCCCCCEEEEESCCCCEECTT
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHH------------------HCCCCCCEEECCCCCCCCCCHH
T ss_conf 4445668898556525554786189897994551586345------------------2589999998979818987968
Q ss_pred HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 00036992029986899653569810005687768858798577448998788899779984167154348843331999
Q 002514 508 LCSISGHKLMYLDLSNNLLSGRLPDCWLLFDRLGILDLANNNFSGKIPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLL 587 (913)
Q Consensus 508 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 587 (913)
. +..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++. + .+++
T Consensus 309 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~ 382 (844)
T 3j0a_A 309 A-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPS 382 (844)
T ss_dssp T-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCS
T ss_pred H-HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-C----CCCC
T ss_conf 8-36888999898989978851878846899999898989987762866613788899988989977861-6----8898
Q ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 9889876883630164367531998566733477033338-854589998678948889897666311122111000013
Q 002514 588 LKLMDLGRNALSGEIPTWIGESLPKLIVLSLMSNKFHGII-PFQLCHLPFIQILDLSSNNIPGIIPKCFNNFTAMAQEKS 666 (913)
Q Consensus 588 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~ 666 (913)
|+.|++++|++. .+|.. ..+++.|++++|.+.+.. +..+..+++|+.|++++|++.+..+....
T Consensus 383 L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------- 447 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP---------- 447 (844)
T ss_dssp CSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS----------
T ss_pred CCHHCCCCCCCC-CCCCC----CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC----------
T ss_conf 232005899723-14554----554312214567534575566651277666666778712555543335----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCC-----CCCHHHHHCCCCCCEE
Q ss_conf 32222456432469998753358876554215550542110132361218983368685-----5551544302347589
Q 002514 667 SVLSVTSNYSFISDGGFPLVWYDNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLG-----GEVPEEIMDLVGLIAM 741 (913)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L 741 (913)
...+.|+.|++++|.++ +..+..+.++++|+.|
T Consensus 448 ------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 448 ------------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp ------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred ------------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf ------------------------------------------66873100247777364410135535554475536577
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75685244448701126899997659688154237812538999996978779451149999878864567778997889
Q 002514 742 NLSRNNLTGQITPKISQLKSLDFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGKIPSGTQLQSFNASTYAGNELCG 821 (913)
Q Consensus 742 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ip~~~~~~~~~~~~~~~n~l~g 821 (913)
+|++|.+++.+|..|.++++|+.|+|++|++++..|..+. ++|+.||+++|++.+.+|.. +..+....+.+|
T Consensus 486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N---- 557 (844)
T 3j0a_A 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN---- 557 (844)
T ss_dssp CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE----
T ss_pred ECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCC----
T ss_conf 7889856553955704501221569999978745710110--04558889888478889668--377688993199----
Q ss_pred CCCCCCCC
Q ss_conf 99999999
Q 002514 822 LPLPNKCP 829 (913)
Q Consensus 822 ~~~~~~c~ 829 (913)
|+.|.|.
T Consensus 558 -p~~C~c~ 564 (844)
T 3j0a_A 558 -KFICECE 564 (844)
T ss_dssp -CCCCSSS
T ss_pred -CCCCCCC
T ss_conf -7025366
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=424.21 Aligned_cols=504 Identities=18% Similarity=0.230 Sum_probs=262.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCCC---CCEEECCCCCCEEEEECCCCCCCCCCEECC
Q ss_conf 8988989999995421968999--------98899999999998755---632432999968999949999898510058
Q 002514 36 RCIDEEREALLSFKQSLVDEHG--------FLSSWGSEDNKSDCCEW---IGVYCRNKTHHVYALDLQDGSLKLKGTILS 104 (913)
Q Consensus 36 ~~~~~~~~~ll~~k~~~~~~~~--------~~~~W~~~~~~~~~c~w---~~v~c~~~~~~v~~L~L~~~~~~~~g~~~~ 104 (913)
.....|+.||.++++++.++.. ...+|. .+.+||.| .||+|+.. +||+.|+|++ ..+.|.+ +
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--~~l~g~l-p 98 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG--FGASGRV-P 98 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT--SCCEEEE-C
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEECCC-CCEEEEEECC--CCCCCCC-C
T ss_conf 667788999999999758997454776776578877---7998000147798487678-9788998427--6657728-8
Q ss_pred CCCCCCCCCCEEECCCCCCCCC-----------CCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCC
Q ss_conf 5522899889883999999999-----------7310587632149689888989998899568899-999899889976
Q 002514 105 PSLRKLQHLTYLDLSDNDFSGI-----------PIADFIGSLSSKLRHLDLGWAGFAGSVPPQLGNL-SNLQYLNLGYND 172 (913)
Q Consensus 105 ~~l~~l~~L~~L~Ls~n~i~~~-----------~~~~~~~~l~~~L~~L~Ls~n~~~~~~p~~l~~l-~~L~~L~Ls~n~ 172 (913)
++++++++|++|+|++|.+... .+|... +.. |+ ++++++.+.+..|..+..+ ..+..+++....
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~-l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQK-MR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHH-HH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHH-HH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 578568451189876885123774334532356733888--888-87-65777554117066677887777642755465
Q ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEC--C
Q ss_conf 83567872433069998699857846999997247621899888998569999999999984111258776149987--8
Q 002514 173 LLSVGNLLHWLYHLSSLRYLHLGHNNLSNSNDWPLVVYKLSSLTTLILEGCDLPPFFPSADDPLHLNSSKSLEFLDL--S 250 (913)
Q Consensus 173 ~~~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~L~~L~L--s 250 (913)
+.. . . . ..++.+.+ .
T Consensus 175 --------------------------~~~--------------------------~-------~---~-~~l~~l~l~~~ 191 (636)
T 4eco_A 175 --------------------------IKK--------------------------S-------S---R-ITLKDTQIGQL 191 (636)
T ss_dssp --------------------------CCC--------------------------C-------C---C-CCCCTTTTTCC
T ss_pred --------------------------CCC--------------------------C-------C---C-CCHHHHHHCCC
T ss_conf --------------------------410--------------------------1-------3---3-44213001013
Q ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC-----------------CCHHHC--CCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99899996025773169975998438736544-----------------531010--89988599844774777655012
Q 002514 251 ENNLTSSVYPWLFNVSSNLVELGLSSNLLQGS-----------------IPDAFE--HMVSLQTLFLYSNELEGGIPKFF 311 (913)
Q Consensus 251 ~n~l~~~~~~~l~~~~~~L~~L~L~~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l 311 (913)
.|.+++ +|..+.++.. |++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+
T Consensus 192 ~n~l~~-ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred CCCCCC-CCHHHHCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 677750-7877725647-87898868823664232212222210010248632200446878889804885776283888
Q ss_pred CCCCCCCEEECCCCC-CCC-CHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH--H
Q ss_conf 387666566743788-987-315765202678789984699822885855799989999887998438769854401--1
Q 002514 312 GNMCCLNELVLCSNQ-LTG-QLFEFIQNLSCGCAKNSLESLDLSANAVTGPIPELGGLSSLKSLYLGGNRLNGTINQ--S 387 (913)
Q Consensus 312 ~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~ 387 (913)
.++++|++|++++|+ +++ ..|..+..+.. +..+++|++|++++|.++ .+|. .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-----------------------~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALAD-----------------------APVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHH-----------------------SGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred HCCCCCCEEECCCCCCCCCCCCHHHHHHHHC-----------------------CCCCCCCCEEECCCCCCC-CCCCHHH
T ss_conf 3499978897847988766533578875430-----------------------465788888989799377-6676555
Q ss_pred HCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 15999975998007778432381333043451133557772465587888825442265884269755752336788845
Q 002514 388 LGRMYKLEKLSLGGNSLTGVISEDFFSNTSNLKNQIDWLDISNTGISDTIPDWFWDLSRKKLSFLNLSNNQIKGKLPDLS 467 (913)
Q Consensus 388 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 467 (913)
+..+++|+.|++++|.+.|.+| .+..+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l--------------------------------------------------- 352 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP--AFGSE--------------------------------------------------- 352 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC--CCEEE---------------------------------------------------
T ss_pred HCCCCCCCEEECCCCCCCCCHH--HHCCC---------------------------------------------------
T ss_conf 4257888989690880705166--64788---------------------------------------------------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCEEECC
Q ss_conf 555722046882435899999889653246785766520000036992029986899653569810005687-7688587
Q 002514 468 LRFDTYDISSNHFEGPIPPLPSNASVLNLSKNKFSGSISFLCSISGHKLMYLDLSNNLLSGRLPDCWLLFDR-LGILDLA 546 (913)
Q Consensus 468 ~~l~~l~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls 546 (913)
++|+.|++++|.++ .+|..+..+++ |+.|+++
T Consensus 353 ----------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 353 ----------------------------------------------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp ----------------------------------------------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred ----------------------------------------------CCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECC
T ss_conf ----------------------------------------------98898989899403-0337565102368689852
Q ss_pred CCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCHHHH-------CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
Q ss_conf 9857744899878889--977998416715434884333-------1999988987688363016436753199856673
Q 002514 547 NNNFSGKIPDSMGSLP--NIQILSLHNNRLTGELPSTLQ-------NCLLLKLMDLGRNALSGEIPTWIGESLPKLIVLS 617 (913)
Q Consensus 547 ~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~ 617 (913)
+|.+. .+|..+..+. +|+.|++++|.+++..|..+. .+++|+.|++++|++. .+|..++..+++|+.|+
T Consensus 386 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 386 HNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463 (636)
T ss_dssp SSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred CCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEE
T ss_conf 98275-44665533345766889774885788652442002201125898888977279668-67878871589889898
Q ss_pred CCCCCCCCCCCCCCC-------CCCCCCEEECCCCCCCCCCCHHHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 347703333885458-------999867894888989766631112--21110000133222245643246999875335
Q 002514 618 LMSNKFHGIIPFQLC-------HLPFIQILDLSSNNIPGIIPKCFN--NFTAMAQEKSSVLSVTSNYSFISDGGFPLVWY 688 (913)
Q Consensus 618 L~~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (913)
+++|.+....+..+. ++++|+.|++++|+++ .+|..+. .+
T Consensus 464 Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l------------------------------ 512 (636)
T 4eco_A 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL------------------------------ 512 (636)
T ss_dssp CCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC------------------------------
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHCCC------------------------------
T ss_conf 97997887397884044001221477338989699388-16854534458------------------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEC------CCCCCCCCCCCCCCCCCCC
Q ss_conf 8876554215550542110132361218983368685555154430234758975------6852444487011268999
Q 002514 689 DNSYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNL------SRNNLTGQITPKISQLKSL 762 (913)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L 762 (913)
+.|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+.++++|
T Consensus 513 -----------------------~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 513 -----------------------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp -----------------------TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred -----------------------CCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCC
T ss_conf -----------------------876989898998877-68235308887878898886656673121273778569987
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 9765968815423781253899999697877945114
Q 002514 763 DFLDLSRNRFFGGIPSSLSQLSGLSVMDLSYNNLSGK 799 (913)
Q Consensus 763 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~L~g~ 799 (913)
+.|++++|++ +.+|..+. ++|+.||+++|++...
T Consensus 569 ~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 569 TQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CEEECCCCCC-CCCCHHHH--CCCCEEECCCCCCCCC
T ss_conf 8898989947-70597683--8678998769987633
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=419.64 Aligned_cols=215 Identities=23% Similarity=0.171 Sum_probs=136.5
Q ss_pred CCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCC
Q ss_conf 00568776885879857744--8998788899779984167154348843331999988987688363016436753199
Q 002514 534 WLLFDRLGILDLANNNFSGK--IPDSMGSLPNIQILSLHNNRLTGELPSTLQNCLLLKLMDLGRNALSGEIPTWIGESLP 611 (913)
Q Consensus 534 ~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~ 611 (913)
+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..|...+..++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred HCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCC
T ss_conf 024898887977587368775201221467755486788995300-0554068888896589887058753764564621
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85667334770333388545899986789488898976-66311122111000013322224564324699987533588
Q 002514 612 KLIVLSLMSNKFHGIIPFQLCHLPFIQILDLSSNNIPG-IIPKCFNNFTAMAQEKSSVLSVTSNYSFISDGGFPLVWYDN 690 (913)
Q Consensus 612 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (913)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..++.+
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----------------------------- 475 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL----------------------------- 475 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-----------------------------
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCC-----------------------------
T ss_conf 378898968978743355534778789898989837985467760457889-----------------------------
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 76554215550542110132361218983368685555154430234758975685244448701126899997659688
Q 002514 691 SYFGQAELTWKGSQYKYQNTLGLVKMLDLSSNKLGGEVPEEIMDLVGLIAMNLSRNNLTGQITPKISQLKSLDFLDLSRN 770 (913)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 770 (913)
+.|++++|++++.+|..+.++++|+.|++++|++++.+|..|.++++|+.|++++|
T Consensus 476 ------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 476 ------------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp ------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred ------------------------CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf ------------------------98989888577648656154646898989899578748777068876898889898
Q ss_pred CCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCC
Q ss_conf 15423781253899-9996978779451149999
Q 002514 771 RFFGGIPSSLSQLS-GLSVMDLSYNNLSGKIPSG 803 (913)
Q Consensus 771 ~l~~~~p~~l~~l~-~L~~L~ls~N~L~g~ip~~ 803 (913)
+++ .+|..+..++ +|+.+++++|++.|.++..
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 376-668767521021748876289866477648
Done!