BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002515
(913 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/436 (51%), Positives = 305/436 (69%), Gaps = 6/436 (1%)
Query: 2 RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
R FDVQ++G A LH G++AEMKTGEGKTL L AYLNAL G GVH+VTVNDYLA+RD+E
Sbjct: 111 RPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSE 170
Query: 62 WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
WM RVHRFLGL VG+I M P+ERR Y DITY N+E GFDYLRDN+A + + LV R
Sbjct: 171 WMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQR 230
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKN 181
H+AIVDEVDS+LIDE R PL+ISG A Y A++A L+ + +HY V+L+
Sbjct: 231 G---HHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRK 287
Query: 182 NSVELTEEGIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALII 240
+V + E+G+ E L ++L++ N P ++ NALKAKE + RD YIVR+G+ LI+
Sbjct: 288 RTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIV 347
Query: 241 NELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKT 300
+E TGRV RR++EG+HQA+EAKE ++I+A++ +A IT Q+ F+LY KL+GMTGTA+T
Sbjct: 348 DEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQT 407
Query: 301 EEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGS 360
E E +++++ V+ +PTN+P IR D + T K+ +V + G+PVL+G+
Sbjct: 408 EAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGT 467
Query: 361 TSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDII 420
TSVE SEYLS ++ IPHNVLNA KY +EA +A AGR+ +T++TNMAGRGTDI+
Sbjct: 468 TSVERSEYLSRQFTKRRIPHNVLNA--KYHEQEATIIAVAGRRGGVTVATNMAGRGTDIV 525
Query: 421 LGGNPKMLAKKIIEDR 436
LGGN L + + +R
Sbjct: 526 LGGNVDFLTDQRLRER 541
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 167/352 (47%), Gaps = 65/352 (18%)
Query: 547 CSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSF 606
S E EV GGL+V+GT HESRRIDNQLRGR+GRQGDPG +RF +SL DE+ ++ F
Sbjct: 567 ASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRR--F 624
Query: 607 DTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKH 666
+ + L++R+ +D+PIE + R + Q E+ F +RK+++++DEV+ QRK
Sbjct: 625 NGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKV 684
Query: 667 VYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKL---LKEFIAI 723
+Y R+ IL G E+ Q ++ V+ + G + W LD L LK +
Sbjct: 685 IYAERRRILEG--ENLKDQALDMVRDVITAYVDGATGE-GYAEDWDLDALWTALKTLYPV 741
Query: 724 AGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRW 783
GI+ D+L RK +R
Sbjct: 742 ----------GITADSLT---------------------------------RKDHEFER- 757
Query: 784 LAICSDDLTKNGRYRATTNLLRKYLGDILIASYLNVVQ-ESRYDDVYMKEVERAVLVKTL 842
DDLT+ LL L D A + E + M+++ER VL+ +
Sbjct: 758 -----DDLTRE-------ELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVI 805
Query: 843 DCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTV 894
D WR+HL M+ L + +R+ R+PL EY+ +G F++ML + +V
Sbjct: 806 DRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFMAMLDGMKEESV 857
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 82 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 142 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 200 -PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 258
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 259 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 318
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 319 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 378
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 379 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 438
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 439 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 496
Query: 423 GNPKMLA 429
K L
Sbjct: 497 EGVKELG 503
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 496 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 555
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 556 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 585
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 586 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 633
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 634 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 679
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 680 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 766
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 82 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 142 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 200 -PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 258
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 259 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 318
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 319 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 378
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 379 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 438
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 439 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 496
Query: 423 GNPKMLA 429
K L
Sbjct: 497 EGVKELG 503
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 496 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 555
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 556 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 585
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 586 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 633
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 634 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 679
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 680 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 766
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 82 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 142 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 200 -PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 258
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 259 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 318
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 319 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 378
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 379 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 438
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 439 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 496
Query: 423 GNPKMLA 429
K L
Sbjct: 497 EGVKELG 503
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 496 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 555
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 556 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 585
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 586 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 633
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 634 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 679
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 680 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 766
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 85 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 144
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 202
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 203 -PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 261
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 262 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 321
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 322 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 442 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 499
Query: 423 GNPKMLA 429
K L
Sbjct: 500 EGVKELG 506
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 499 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 558
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 559 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 588
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 589 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 636
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 637 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 682
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 683 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 730
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 731 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 769
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 85 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 144
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 202
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++DEVDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 203 -PLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 261
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 262 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 321
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 322 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 382 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 442 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 499
Query: 423 GNPKMLA 429
K L
Sbjct: 500 EGVKELG 506
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 499 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 558
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 559 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 588
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 589 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 636
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 637 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 682
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 683 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 730
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 731 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 769
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 443 bits (1139), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/427 (52%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 82 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 142 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++D+VDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 200 -PLHFAVIDQVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 258
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 259 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 318
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 319 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 378
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 379 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 438
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAGRGTDI LG
Sbjct: 439 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLG 496
Query: 423 GNPKMLA 429
K L
Sbjct: 497 EGVKELG 503
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 496 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 555
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 556 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 585
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 586 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 633
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 634 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 679
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 680 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 766
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/427 (51%), Positives = 300/427 (70%), Gaps = 6/427 (1%)
Query: 4 FDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWM 63
F VQ++GG LHDG+IAEMKTGEGKTL STL YLNALTG+GVHVVTVN+YLA RDAE M
Sbjct: 82 FKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQM 141
Query: 64 ERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWP 123
++ FLGL+VGL M +E+R Y DITY+ N+ELGFDYLRDN+ EQ+V R
Sbjct: 142 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQR-- 199
Query: 124 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNS 183
P HFA++D+VDS+LIDE R PL+ISG+A+K Y A L YT ++K +
Sbjct: 200 -PLHFAVIDQVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKA 258
Query: 184 VELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINE 242
V+LTEEG+ AE A ++L+D ++ + ALKA ++DV Y+V +G+ +I++
Sbjct: 259 VQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDS 318
Query: 243 LTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEE 302
TGR+ + RR+SEG+HQA+EAKEGL+IQ +S+ +A IT+Q+ F++Y KL+GMTGTAKTEE
Sbjct: 319 FTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 378
Query: 303 KEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTS 362
+EF ++ M V+ +PTN P +R D P + T GK++ ++V + G+PVLVG+ +
Sbjct: 379 EEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 438
Query: 363 VENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
VE SE +S LLK +GIPH VLNA K REA+ + +AG+K A+TI+TNMAG+GTDI LG
Sbjct: 439 VETSELISKLLKNKGIPHQVLNA--KNHEREAQIIEEAGQKGAVTIATNMAGKGTDIKLG 496
Query: 423 GNPKMLA 429
K L
Sbjct: 497 EGVKELG 503
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 69/339 (20%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G VK LGGL V+GT HESRRIDNQLRGR+GRQGDPG T+F +S++DE+ ++F + +
Sbjct: 496 GEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTM 555
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
A ++ R D+ PI+ + R +E +K V
Sbjct: 556 A--MLDRFGMDDSTPIQSKMVSR-------------------------AVESSQKRV--- 585
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLD-KLLKEFIAIAGKILD 729
G N +Q+ QY D+++ + + R+ +D + L+E + I
Sbjct: 586 -----EGNNFDSRKQLLQY-----DDVLRQQREVIYKQRFEVIDSENLREIVE--NMIKS 633
Query: 730 DLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSD 789
L I+ T EELPE +D DL L G KS +
Sbjct: 634 SLERAIAAYT---PREELPEEWKLD----GLVDLINTTYLDEGALEKSDIFGK------- 679
Query: 790 DLTKNGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVERAVLVKTLDCFWRDH 849
+ + + + D +I Y +E ++ M+E E+ ++++ +D W DH
Sbjct: 680 ----------EPDEMLELIMDRIITKYNE--KEEQFGKEQMREFEKVIVLRAVDSKWMDH 727
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSA 888
+ M++L +++R++ NPL EY+++G F M+ +
Sbjct: 728 IDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIES 766
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/388 (55%), Positives = 277/388 (71%), Gaps = 13/388 (3%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ+IGGAVLH+G IAEMKTGEGKTLV+TLA LNALTG+GVHVVTVNDYLA+RDA
Sbjct: 78 MRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDA 137
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
EWM V+R LGLSVG+IQ P ERR Y D+TY NSELGFDYLRDN+A + +QLV+
Sbjct: 138 EWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL------- 173
R P H+AI+DEVDS+LIDE R PL+ISG A K Y A++A+ L +GL
Sbjct: 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVR 257
Query: 174 -----HYTVELKNNSVELTEEGIALAEMALETNDLWD-ENDPWARFVMNALKAKEFYRRD 227
YTVE KN SV LT +GIA AE L L+ EN A ++ A++AKE Y RD
Sbjct: 258 KEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRD 317
Query: 228 VQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKL 287
YIV++G+ +I++E TGR+ RR+ EG+HQA+EAKEG++I+ ++ +A ITYQ+ F+L
Sbjct: 318 RDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRL 377
Query: 288 YPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVE 347
Y K +GMTGTAKTEEKEF +++ M V+ VPTN P IR D P + T +GK+ +E+
Sbjct: 378 YEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIA 437
Query: 348 SMFRLGRPVLVGSTSVENSEYLSDLLKQ 375
+ G+PVLVG+ S+E SE LS +LK+
Sbjct: 438 EKYERGQPVLVGTISIEKSERLSQMLKE 465
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 124/239 (51%), Gaps = 5/239 (2%)
Query: 537 LSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSL 596
L +++ C + V+ LGGL +IGT HESRRIDNQLRGRAGRQGDPG +RF VS
Sbjct: 638 LERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSF 697
Query: 597 QDEMFQKFSFDTSWAVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEF 656
D++ + F+ D A ++ R+ D+ PIE + R + Q E F IRK L++F
Sbjct: 698 DDDLMRLFASDRVIA--MLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQF 755
Query: 657 DEVLEVQRKHVYDLRQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKL 716
D+VL QR+ +Y R+ IL G +E + ++ V + ++P HP W L+ L
Sbjct: 756 DDVLSRQREVIYAQRRLILLGKDEEVKEAAIGMVEETVASLAENFLNPEVHPEDWDLEGL 815
Query: 717 LKEFIAIAGKILDDLFAGISGDTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRR 775
+ A ++ D FA + LK+ E + L + + + P L R + R
Sbjct: 816 KATLLDTAPQLQDFPFAELRA---LKAEEAVERLVEAALKAYEAREAELSPPLMRAVER 871
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 820 VQESRYDDVYMKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGC 879
+E+ M+ VER V++ +D W++HL N++ L + +R +G ++P +EYKI+
Sbjct: 856 AREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEAT 915
Query: 880 RFFISMLS 887
R F M++
Sbjct: 916 RLFNEMVA 923
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/474 (47%), Positives = 302/474 (63%), Gaps = 58/474 (12%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR FDVQ++GG LH+G +AEMKTGEGKTL +T+ YLNAL G+GVH+VTVNDYLA+RDA
Sbjct: 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDA 133
Query: 61 EWMERVHRFLGLSVGLIQ----------------RGMIPEE------------------- 85
WM V+ FLGL VG+I R I E
Sbjct: 134 LWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMN 193
Query: 86 ---------------RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHF-A 129
R+ Y CD+TY N+E GFDYLRDNL + V R HF A
Sbjct: 194 KEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRG----HFYA 249
Query: 130 IVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEE 189
IVDE DSVLIDE R PL+ISG + + + Y A++A+ V+ +TV+ K ++ LTEE
Sbjct: 250 IVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEE 309
Query: 190 GIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVE 248
G+A AE + +L+D N ++NALKA +++DV Y+V NG+ +I++E TGR+
Sbjct: 310 GVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLL 369
Query: 249 EKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308
RR+S G+HQA+EAKEG+ I+ +S+ A IT+Q+ F++Y KL+GMTGTAKTEE EF+++
Sbjct: 370 PGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQV 429
Query: 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368
+ M V+ +PT+ P IR D F T + K+E +E+E ++ G+PVLVG+TS+E SE
Sbjct: 430 YGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSEL 489
Query: 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
LS +LK++GIPH VLNA KY +EAE VA+AG+K +TI+TNMAGRGTDI LG
Sbjct: 490 LSSMLKKKGIPHQVLNA--KYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLG 541
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V LGGL +IGT HESRRIDNQLRGRAGRQGDPG + F +SL+D++ + F +
Sbjct: 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIG 600
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
V I +I +E PI+ + + + +Q E F IRK+L+E D+VL+ QR+ VY L
Sbjct: 601 KVMNILKI--EEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSL 658
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKL 716
R IL + +Y++ + ++++ V+ + W ++ L
Sbjct: 659 RDQIL------LEKDYDEYLKDIFEDVVSTRVEEFCSGKNWDIESL 698
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/474 (47%), Positives = 302/474 (63%), Gaps = 58/474 (12%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MR FDVQ++GG LH+G +AEMKTGEGKTL +T+ YLNAL G+GVH+VTVNDYLA+RDA
Sbjct: 74 MRPFDVQVMGGIALHEGKVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDA 133
Query: 61 EWMERVHRFLGLSVGLIQ----------------RGMIPEE------------------- 85
WM V+ FLGL VG+I R I E
Sbjct: 134 LWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMN 193
Query: 86 ---------------RRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMRWPKPFHF-A 129
R+ Y CD+TY N+E GFDYLRDNL + V R HF A
Sbjct: 194 KEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRG----HFYA 249
Query: 130 IVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEE 189
IVDE DSVLIDE R PL+ISG + + + Y A++A+ V+ +TV+ K ++ LTEE
Sbjct: 250 IVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEE 309
Query: 190 GIALAEMALETNDLWDE-NDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVE 248
G+A AE + +L+D N ++NALKA +++DV Y+V NG+ +I++E TGR+
Sbjct: 310 GVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLL 369
Query: 249 EKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 308
RR+S G+HQA+EAKEG+ I+ +S+ A IT+Q+ F++Y KL+GMTGTAKTEE EF+++
Sbjct: 370 PGRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQV 429
Query: 309 FQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEY 368
+ M V+ +PT+ P IR D F T + K+E +E+E ++ G+PVLVG+TS+E SE
Sbjct: 430 YGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSEL 489
Query: 369 LSDLLKQQGIPHNVLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILG 422
LS +LK++GIPH VLNA KY +EAE VA+AG+K +TI+TNMAGRGTDI LG
Sbjct: 490 LSSMLKKKGIPHQVLNA--KYHEKEAEIVAKAGQKGMVTIATNMAGRGTDIKLG 541
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 551 GSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSW 610
G V LGGL +IGT HESRRIDNQLRGRAGRQGDPG + F +SL+D++ + F +
Sbjct: 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIG 600
Query: 611 AVDLISRITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDL 670
V I +I +E PI+ + + + +Q E F IRK+L+E D+VL+ QR+ VY L
Sbjct: 601 KVMNILKI--EEGQPIQHPMLSKLIENIQKKVEGINFSIRKTLMEMDDVLDKQRRAVYSL 658
Query: 671 RQSILTGANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKL 716
R IL + +Y++ + ++++ V+ + W ++ L
Sbjct: 659 RDQIL------LEKDYDEYLKDIFEDVVSTRVEEFCSGKNWDIESL 698
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/443 (50%), Positives = 295/443 (66%), Gaps = 24/443 (5%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VL++ IAEM+TGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDA
Sbjct: 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA 132
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E + FLGL+VG+ GM +R Y DITY N+E GFDYLRDN+A + E+ V
Sbjct: 133 ENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLV---------- 170
R H+A+VDEVDS+LIDE R PL+ISG A Y K+ L+
Sbjct: 193 R---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETF 249
Query: 171 QGL-HYTVELKNNSVELTEEGIALAEMALETNDLWDEND----PWARFVMN----ALKAK 221
QG H++V+ K+ V LTE G+ L E L + DE + P +M+ AL+A
Sbjct: 250 QGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309
Query: 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281
+ RDV YIV++G+ +I++E TGR + RRWS+G+HQAVEAKEG++IQ ++ +A IT+
Sbjct: 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369
Query: 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEY 341
Q+ F+LY KL+GMTGTA TE EF ++++ + VPTN P IR DLP + T K +
Sbjct: 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQA 429
Query: 342 ARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG 401
++++ G+PVLVG+ S+E SE +S+ L + GI HNVLNA K+ A EA VAQAG
Sbjct: 430 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA--KFHANEAAIVAQAG 487
Query: 402 RKYAITISTNMAGRGTDIILGGN 424
A+TI+TNMAGRGTDI+LGG+
Sbjct: 488 YPAAVTIATNMAGRGTDIVLGGS 510
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 162/358 (45%), Gaps = 74/358 (20%)
Query: 558 GGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISR 617
GGLH+IGT HESRRIDNQLRGR+GRQGD GS+RF +S++D + + F+ D ++ +
Sbjct: 544 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDR--VSGMMRK 601
Query: 618 ITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677
+ IE + + + Q E F IRK L+E+D+V QR+ +Y R +L
Sbjct: 602 LGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661
Query: 678 ANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISG 737
++ + + + ++ +++ +D P+
Sbjct: 662 SD------VSETINSIREDVFKATIDAYIPPQS--------------------------- 688
Query: 738 DTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRY 797
L+ + ++P L N+F DLP + WL
Sbjct: 689 ---LEEMWDIPGLQERLKNDFDL-DLP---------------IAEWLD------------ 717
Query: 798 RATTNLLRKYLGDILIASYLNVVQESRYDDVYMKEVER----AVLVKTLDCFWRDHLINM 853
L + L + ++A + V Q R ++V E+ R V+++TLD W++HL M
Sbjct: 718 -KEPELHEETLRERILAQSIEVYQ--RKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 774
Query: 854 NRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYW-SSPMESQEL 910
+ L +++R + ++P +EYK + F +ML + + + +L + P E +EL
Sbjct: 775 DYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 832
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/443 (50%), Positives = 295/443 (66%), Gaps = 24/443 (5%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VL++ IAEM+TGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDA
Sbjct: 73 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA 132
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E + FLGL+VG+ GM +R Y DITY N+E GFDYLRDN+A + E+ V
Sbjct: 133 ENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLV---------- 170
R H+A+VDEVDS+LIDE R PL+ISG A Y K+ L+
Sbjct: 193 R---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETF 249
Query: 171 QGL-HYTVELKNNSVELTEEGIALAEMALETNDLWDEND----PWARFVMN----ALKAK 221
QG H++V+ K+ V LTE G+ L E L + DE + P +M+ AL+A
Sbjct: 250 QGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309
Query: 222 EFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITY 281
+ RDV YIV++G+ +I++E TGR + RRWS+G+HQAVEAKEG++IQ ++ +A IT+
Sbjct: 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITF 369
Query: 282 QSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEY 341
Q+ F+LY KL+GMTGTA TE EF ++++ + VPTN P IR DLP + T K +
Sbjct: 370 QNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQA 429
Query: 342 ARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAG 401
++++ G+PVLVG+ S+E SE +S+ L + GI HNVLNA K+ A EA VAQAG
Sbjct: 430 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA--KFHANEAAIVAQAG 487
Query: 402 RKYAITISTNMAGRGTDIILGGN 424
A+TI+TNMAGRGTDI+LGG+
Sbjct: 488 YPAAVTIATNMAGRGTDIVLGGS 510
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 73/344 (21%)
Query: 558 GGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISR 617
GGLH+IGT HESRRIDNQLRGR+GRQGD GS+RF +S++D + + F+ D ++ +
Sbjct: 544 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDR--VSGMMRK 601
Query: 618 ITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677
+ IE + + + Q E F IRK L+E+D+V QR+ +Y R +L
Sbjct: 602 LGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDV 661
Query: 678 ANESCSQQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGISG 737
++ S + + ++ +++ +D P+
Sbjct: 662 SDVS------ETINSIREDVFKATIDAYIPPQS--------------------------- 688
Query: 738 DTLLKSIEELPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTKNGRY 797
L+ + ++P L N+F DLP + WL
Sbjct: 689 ---LEEMWDIPGLQERLKNDFDL-DLP---------------IAEWLD------------ 717
Query: 798 RATTNLLRKYLGDILIASYLNVVQESRYDDV----YMKEVERAVLVKTLDCFWRDHLINM 853
L + L + ++A + V Q R ++V M+ E+ V+++TLD W++HL M
Sbjct: 718 -KEPELHEETLRERILAQSIEVYQ--RKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAM 774
Query: 854 NRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESL 897
+ L +++R + ++P +EYK + F +ML + + + +L
Sbjct: 775 DYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTL 818
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 218/442 (49%), Positives = 286/442 (64%), Gaps = 24/442 (5%)
Query: 2 RHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAE 61
RHFDVQ++GG VL++ IAE +TGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDAE
Sbjct: 74 RHFDVQLLGGXVLNERCIAEXRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAE 133
Query: 62 WMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVMR 121
+ FLGL+VG+ G +R Y DITY N+E GFDYLRDN A + E+ V R
Sbjct: 134 NNRPLFEFLGLTVGINLPGXPAPAKREAYAADITYGTNNEYGFDYLRDNXAFSPEERVQR 193
Query: 122 WPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLV----------Q 171
H+A+VDEVDS+LIDE R PL+ISG A Y K+ L+ Q
Sbjct: 194 ---KLHYALVDEVDSILIDEARTPLIISGPAEDSSEXYKRVNKIIPHLIRQEKEDSETFQ 250
Query: 172 GL-HYTVELKNNSVELTEEGIALAEMALETNDLWDE--------NDPWARFVMNALKAKE 222
G H++V+ K+ V LTE G+ L E L + DE N V AL+A
Sbjct: 251 GEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIXDEGESLYSPANIXLXHHVTAALRAHA 310
Query: 223 FYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQ 282
+ RDV YIV++G+ +I++E TGR + RRWS+G+HQAVEAKEG++IQ ++ +A IT+Q
Sbjct: 311 LFTRDVDYIVKDGEVIIVDEHTGRTXQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQ 370
Query: 283 SLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRVDLPIQSFATARGKWEYA 342
+ F+LY KL+G TGTA TE EF ++++ + VPTN P IR DLP + T K +
Sbjct: 371 NYFRLYEKLAGXTGTADTEAFEFSSIYKLDTVVVPTNRPXIRKDLPDLVYXTEAEKIQAI 430
Query: 343 RQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHNVLNARPKYAAREAETVAQAGR 402
++++ G+PVLVG+ S+E SE +S+ L + GI HNVLNA K+ A EA VAQAG
Sbjct: 431 IEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNA--KFHANEAAIVAQAGY 488
Query: 403 KYAITISTNMAGRGTDIILGGN 424
A+TI+TN AGRGTDI+LGG+
Sbjct: 489 PAAVTIATNXAGRGTDIVLGGS 510
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 82/362 (22%)
Query: 558 GGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFDTSWAVDLISR 617
GGLH+IGT HESRRIDNQLRGR+GRQGD GS+RF +S +D + + F+ D +
Sbjct: 544 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSXEDALXRIFASDR--VSGXXRK 601
Query: 618 ITNDEDMPIEGDAIVRQLLGLQISAEKYYFGIRKSLVEFDEVLEVQRKHVYDLRQSILTG 677
+ IE + + + Q E F IRK L+E+D+V D R++I +
Sbjct: 602 LGXKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDV-------ANDQRRAIYSQ 654
Query: 678 ANESCS-QQIFQYMQAVVDEIIFGNVDPLKHPRYWSLDKLLKEFIAIAGKILDDLFAGIS 736
NE + + + ++ +++ +D P
Sbjct: 655 RNELLDVSDVSETINSIREDVFKATIDAYIPP---------------------------- 686
Query: 737 GDTLLKSIEE---LPELNSIDINNFYFPDLPKPPNLFRGIRRKSSSLKRWLAICSDDLTK 793
+S+EE +P L N+F DLP + WL
Sbjct: 687 -----QSLEEXWDIPGLQERLKNDFDL-DLP---------------IAEWLD-------- 717
Query: 794 NGRYRATTNLLRKYLGDILIASYLNVVQESRYDDVYMKE----VERAVLVKTLDCFWRDH 849
L + L + ++A + V Q R ++V E E+ V ++TLD W++H
Sbjct: 718 -----KEPELHEETLRERILAQSIEVYQ--RKEEVVGAEXXRHFEKGVXLQTLDSLWKEH 770
Query: 850 LINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLVQYW-SSPMESQ 908
L + L +++R + ++P +EYK + F + L + + + +L + P E +
Sbjct: 771 LAAXDYLRQGIHLRGYAQKDPKQEYKRESFSXFAAXLESLKYEVISTLSKVQVRXPEEVE 830
Query: 909 EL 910
EL
Sbjct: 831 EL 832
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
pdb|3BXZ|B Chain B, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
Length = 471
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 114/150 (76%), Gaps = 3/150 (2%)
Query: 1 MRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDA 60
MRHFDVQ++GG VL++ IAEM+TGEGKTL +TL AYLNALTG+GVHVVTVNDYLAQRDA
Sbjct: 83 MRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDA 142
Query: 61 EWMERVHRFLGLSVGLIQRGMIPEERRSNYRCDITYTNNSELGFDYLRDNLAANSEQLVM 120
E + FLGL+VG+ GM +R Y DITY N+E GFDYLRDN+A + E+ V
Sbjct: 143 ENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 202
Query: 121 RWPKPFHFAIVDEVDSVLIDEGRNPLLISG 150
R H+A+VDEVDS+LIDE R PL+ISG
Sbjct: 203 R---KLHYALVDEVDSILIDEARTPLIISG 229
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 262 EAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLP 321
EA+ L I + +A IT+Q+ F+LY KL+GMTGTA TE EF ++++ + VPTN P
Sbjct: 220 EARTPLIISGANQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRP 279
Query: 322 NIRVDLPIQSFATARGKWEYARQEVESMFRLGRPVLVGSTSVENSEYLSDLLKQQGIPHN 381
IR DLP + T K + ++++ G+PVLVG+ S+E SE +S+ L + GI HN
Sbjct: 280 MIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 339
Query: 382 VLNARPKYAAREAETVAQAGRKYAITISTNMAGRGTDIILGGN 424
VLNA K+ A EA VAQAG A+TI+TNMAGRGTDI+LGG+
Sbjct: 340 VLNA--KFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGS 380
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 42/50 (84%)
Query: 558 GGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFSFD 607
GGLH+IGT HESRRIDNQLRGR+GRQGD GS+RF +S++D + + F+ D
Sbjct: 414 GGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASD 463
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 537 LSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRID 574
++V+ +C + S +G++VKR G + TS++ +R++D
Sbjct: 7 IAVIGECXIELSEKGADVKRGFGGDTLNTSVYIARQVD 44
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
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Length = 602
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 316 VPTNLPNIRVDLP--------IQSFATARGKW--EYARQEVESMFRLGRPVLVGSTSVEN 365
VP + NIR+ P I++F +W Y R+++ RL L TS+E
Sbjct: 223 VPLDGFNIRLRQPCNIGDTVQIETFMDGVSQWRSSYTRRQI----RLLDSKLTSKTSLEG 278
Query: 366 SEYLSDLLKQQGIPHNVLNARP 387
S Y++DL + IP + P
Sbjct: 279 SIYVTDLSTMKSIPFSAFGLIP 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,352,868
Number of Sequences: 62578
Number of extensions: 1036244
Number of successful extensions: 2987
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2875
Number of HSP's gapped (non-prelim): 56
length of query: 913
length of database: 14,973,337
effective HSP length: 108
effective length of query: 805
effective length of database: 8,214,913
effective search space: 6613004965
effective search space used: 6613004965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)